Query 017091
Match_columns 377
No_of_seqs 398 out of 2426
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 3.5E-83 7.7E-88 646.5 40.4 366 2-374 337-706 (716)
2 COG2274 SunT ABC-type bacterio 100.0 2.9E-78 6.2E-83 630.2 43.5 365 2-372 342-708 (709)
3 KOG0055 Multidrug/pheromone ex 100.0 2.8E-75 6E-80 618.2 41.6 367 2-373 857-1226(1228)
4 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.8E-72 3.8E-77 595.8 48.2 360 2-372 324-685 (686)
5 PRK11174 cysteine/glutathione 100.0 4.7E-72 1E-76 583.2 47.2 364 2-375 212-587 (588)
6 COG1132 MdlB ABC-type multidru 100.0 4.2E-72 9.2E-77 581.1 46.1 364 2-374 201-566 (567)
7 KOG0055 Multidrug/pheromone ex 100.0 1.4E-73 3.1E-78 605.1 33.5 367 2-373 220-589 (1228)
8 TIGR01193 bacteriocin_ABC ABC- 100.0 6.8E-72 1.5E-76 593.3 45.6 362 2-370 344-707 (708)
9 PRK11176 lipid transporter ATP 100.0 1.7E-71 3.6E-76 578.5 47.1 365 2-373 214-580 (582)
10 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-71 2.5E-76 591.8 45.6 360 2-369 342-709 (710)
11 TIGR00958 3a01208 Conjugate Tr 100.0 2.7E-71 5.8E-76 587.9 45.2 359 2-368 350-710 (711)
12 TIGR03375 type_I_sec_LssB type 100.0 1.2E-70 2.6E-75 582.5 46.6 354 2-361 334-689 (694)
13 PTZ00265 multidrug resistance 100.0 6.5E-71 1.4E-75 616.9 46.5 368 2-372 1032-1465(1466)
14 KOG0057 Mitochondrial Fe/S clu 100.0 1.2E-70 2.6E-75 538.9 39.4 362 3-374 225-588 (591)
15 COG4988 CydD ABC-type transpor 100.0 3.5E-70 7.6E-75 542.7 43.1 365 2-374 189-557 (559)
16 TIGR01846 type_I_sec_HlyB type 100.0 8.1E-70 1.7E-74 576.0 47.6 365 2-373 327-693 (694)
17 KOG0056 Heavy metal exporter H 100.0 4.4E-72 9.6E-77 539.8 27.2 366 2-374 408-776 (790)
18 PRK11160 cysteine/glutathione 100.0 9.8E-70 2.1E-74 563.7 46.5 361 2-371 210-573 (574)
19 PRK10790 putative multidrug tr 100.0 3.5E-69 7.5E-74 562.0 47.1 360 2-373 214-576 (592)
20 PRK13657 cyclic beta-1,2-gluca 100.0 5.4E-69 1.2E-73 560.1 48.0 364 2-372 205-570 (588)
21 TIGR02203 MsbA_lipidA lipid A 100.0 4.3E-69 9.3E-74 559.2 47.0 364 2-372 203-568 (571)
22 PRK10789 putative multidrug tr 100.0 1.4E-68 3.1E-73 554.6 47.0 364 2-373 186-551 (569)
23 TIGR01192 chvA glucan exporter 100.0 9.1E-68 2E-72 549.9 47.8 365 2-373 205-571 (585)
24 TIGR02204 MsbA_rel ABC transpo 100.0 9.3E-68 2E-72 549.7 47.0 366 2-372 207-575 (576)
25 COG4987 CydC ABC-type transpor 100.0 8.4E-68 1.8E-72 518.5 36.9 361 3-371 209-572 (573)
26 TIGR01842 type_I_sec_PrtD type 100.0 1E-66 2.3E-71 538.3 46.7 351 2-360 190-542 (544)
27 TIGR02868 CydC thiol reductant 100.0 1.3E-66 2.9E-71 535.9 41.4 323 2-332 203-529 (529)
28 COG5265 ATM1 ABC-type transpor 100.0 1.2E-67 2.5E-72 503.4 29.6 362 2-370 132-496 (497)
29 TIGR00957 MRP_assoc_pro multi 100.0 2.9E-65 6.3E-70 576.1 46.9 360 2-371 1154-1519(1522)
30 TIGR02857 CydD thiol reductant 100.0 5.8E-65 1.3E-69 523.7 43.1 335 2-344 193-529 (529)
31 PTZ00265 multidrug resistance 100.0 1.9E-64 4.1E-69 565.0 45.8 368 2-372 246-728 (1466)
32 PTZ00243 ABC transporter; Prov 100.0 5.3E-64 1.2E-68 565.1 47.9 365 2-373 1147-1547(1560)
33 COG4618 ArpD ABC-type protease 100.0 1.6E-64 3.5E-69 491.4 34.7 352 2-361 208-561 (580)
34 PLN03232 ABC transporter C fam 100.0 1.4E-63 3E-68 561.7 46.0 362 2-373 1099-1472(1495)
35 PLN03130 ABC transporter C fam 100.0 2.2E-63 4.7E-68 561.0 47.1 357 2-372 1102-1474(1622)
36 TIGR01271 CFTR_protein cystic 100.0 9E-61 2E-65 538.3 47.1 361 2-373 1074-1453(1490)
37 COG1126 GlnQ ABC-type polar am 100.0 1.3E-62 2.8E-67 434.1 23.6 217 131-362 2-227 (240)
38 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.8E-60 6.1E-65 491.1 39.8 339 2-353 201-552 (555)
39 PLN03232 ABC transporter C fam 100.0 5.1E-59 1.1E-63 524.8 43.8 349 2-372 489-840 (1495)
40 PLN03130 ABC transporter C fam 100.0 3E-58 6.5E-63 519.4 44.6 345 2-371 489-839 (1622)
41 COG1135 AbcC ABC-type metal io 100.0 8.1E-60 1.8E-64 435.9 20.7 221 131-362 1-233 (339)
42 KOG0054 Multidrug resistance-a 100.0 1.1E-57 2.5E-62 493.8 39.8 360 2-371 1007-1374(1381)
43 COG1125 OpuBA ABC-type proline 100.0 9.7E-59 2.1E-63 417.5 19.4 218 131-362 1-227 (309)
44 PRK10522 multidrug transporter 100.0 1.8E-55 3.9E-60 454.8 40.6 275 68-357 261-536 (547)
45 COG1120 FepC ABC-type cobalami 100.0 5.1E-57 1.1E-61 416.0 22.4 224 131-369 2-236 (258)
46 COG1127 Ttg2A ABC-type transpo 100.0 3.9E-56 8.4E-61 398.6 21.4 226 131-370 8-246 (263)
47 TIGR00957 MRP_assoc_pro multi 100.0 6.5E-54 1.4E-58 484.1 44.8 348 2-370 506-860 (1522)
48 COG3839 MalK ABC-type sugar tr 100.0 5.2E-56 1.1E-60 424.0 22.8 218 129-362 1-225 (338)
49 TIGR00954 3a01203 Peroxysomal 100.0 1E-53 2.3E-58 449.0 40.7 325 2-346 288-653 (659)
50 COG3842 PotA ABC-type spermidi 100.0 4.8E-56 1E-60 426.4 20.6 217 130-362 4-228 (352)
51 COG1117 PstB ABC-type phosphat 100.0 6.7E-56 1.5E-60 390.0 18.9 220 131-362 7-239 (253)
52 COG1136 SalX ABC-type antimicr 100.0 4.7E-55 1E-59 395.6 23.8 208 132-350 2-221 (226)
53 COG3638 ABC-type phosphate/pho 100.0 3.2E-55 6.9E-60 391.7 21.2 216 131-359 3-236 (258)
54 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.1E-54 2.3E-59 398.7 24.3 215 130-363 3-230 (254)
55 COG2884 FtsE Predicted ATPase 100.0 2E-55 4.3E-60 380.4 18.0 210 131-354 1-220 (223)
56 COG1116 TauB ABC-type nitrate/ 100.0 7.2E-55 1.6E-59 395.1 21.5 201 131-350 3-212 (248)
57 COG1124 DppF ABC-type dipeptid 100.0 3.2E-54 6.9E-59 387.8 23.9 229 130-369 2-241 (252)
58 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.7E-53 3.8E-58 402.7 28.8 233 131-371 2-236 (275)
59 COG1122 CbiO ABC-type cobalt t 100.0 3.2E-54 6.8E-59 396.5 21.7 219 131-362 3-230 (235)
60 KOG0054 Multidrug resistance-a 100.0 4E-52 8.8E-57 450.7 40.9 348 2-370 390-741 (1381)
61 TIGR02314 ABC_MetN D-methionin 100.0 1.4E-53 3E-58 414.3 26.5 220 131-361 1-231 (343)
62 COG3840 ThiQ ABC-type thiamine 100.0 7.7E-54 1.7E-58 368.1 21.6 214 132-363 2-222 (231)
63 cd03252 ABCC_Hemolysin The ABC 100.0 9.4E-53 2E-57 390.2 28.4 233 132-370 1-235 (237)
64 COG1118 CysA ABC-type sulfate/ 100.0 7.9E-54 1.7E-58 395.3 19.6 216 131-362 2-229 (345)
65 TIGR01271 CFTR_protein cystic 100.0 4.6E-51 1E-55 459.8 44.8 341 2-369 270-645 (1490)
66 PRK11650 ugpC glycerol-3-phosp 100.0 1.3E-52 2.8E-57 410.2 25.3 218 130-362 2-226 (356)
67 cd03261 ABC_Org_Solvent_Resist 100.0 1.3E-52 2.8E-57 388.9 24.0 220 132-365 1-231 (235)
68 PRK11432 fbpC ferric transport 100.0 2.2E-52 4.8E-57 407.6 24.2 218 129-362 4-228 (351)
69 cd03251 ABCC_MsbA MsbA is an e 100.0 1.3E-51 2.7E-56 381.8 27.2 230 132-367 1-232 (234)
70 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.7E-51 3.7E-56 382.0 28.1 233 132-369 1-235 (238)
71 PRK13650 cbiO cobalt transport 100.0 1.2E-51 2.6E-56 391.9 26.6 221 131-362 4-231 (279)
72 cd03253 ABCC_ATM1_transporter 100.0 3E-51 6.4E-56 379.8 28.2 233 132-371 1-235 (236)
73 TIGR03265 PhnT2 putative 2-ami 100.0 7.3E-52 1.6E-56 404.5 24.4 217 130-362 3-226 (353)
74 cd03254 ABCC_Glucan_exporter_l 100.0 4.4E-51 9.6E-56 376.9 27.3 224 131-361 2-227 (229)
75 PRK11153 metN DL-methionine tr 100.0 2.5E-51 5.5E-56 400.0 26.2 219 132-361 2-231 (343)
76 PRK09536 btuD corrinoid ABC tr 100.0 2.6E-51 5.7E-56 405.3 26.4 223 131-369 3-236 (402)
77 PRK14250 phosphate ABC transpo 100.0 6.5E-51 1.4E-55 379.0 27.0 226 130-369 2-231 (241)
78 cd03288 ABCC_SUR2 The SUR doma 100.0 1.6E-50 3.4E-55 379.9 29.6 237 128-371 16-255 (257)
79 PRK13637 cbiO cobalt transport 100.0 5E-51 1.1E-55 389.1 26.0 220 131-361 2-235 (287)
80 PRK13631 cbiO cobalt transport 100.0 5E-51 1.1E-55 394.0 26.3 224 131-362 21-267 (320)
81 PRK10851 sulfate/thiosulfate t 100.0 3.5E-51 7.6E-56 399.7 25.4 216 131-362 2-228 (353)
82 PRK09452 potA putrescine/sperm 100.0 3.2E-51 7E-56 402.2 25.2 216 131-362 14-236 (375)
83 TIGR00960 3a0501s02 Type II (G 100.0 2.3E-51 5E-56 375.7 22.2 205 132-349 2-216 (216)
84 PRK13643 cbiO cobalt transport 100.0 5.9E-51 1.3E-55 388.8 25.6 219 131-361 1-234 (288)
85 cd03256 ABC_PhnC_transporter A 100.0 5.1E-51 1.1E-55 379.2 24.5 215 132-359 1-233 (241)
86 PRK13537 nodulation ABC transp 100.0 3.8E-51 8.3E-56 392.9 24.3 215 131-361 7-228 (306)
87 PTZ00243 ABC transporter; Prov 100.0 2.2E-49 4.7E-54 446.8 42.1 347 2-370 435-879 (1560)
88 PRK13647 cbiO cobalt transport 100.0 7.6E-51 1.6E-55 385.4 25.5 214 131-358 4-225 (274)
89 TIGR02315 ABC_phnC phosphonate 100.0 1E-50 2.2E-55 377.8 25.5 215 132-359 2-234 (243)
90 cd03296 ABC_CysA_sulfate_impor 100.0 9.9E-51 2.1E-55 377.2 25.4 215 131-361 2-227 (239)
91 cd03244 ABCC_MRP_domain2 Domai 100.0 2.1E-50 4.5E-55 370.5 27.1 217 131-354 2-220 (221)
92 cd03260 ABC_PstB_phosphate_tra 100.0 4.7E-51 1E-55 376.4 22.7 212 132-357 1-226 (227)
93 PRK13634 cbiO cobalt transport 100.0 7.9E-51 1.7E-55 388.3 25.1 221 131-362 2-237 (290)
94 PRK13646 cbiO cobalt transport 100.0 9E-51 1.9E-55 387.2 25.2 223 131-362 2-237 (286)
95 TIGR03258 PhnT 2-aminoethylpho 100.0 5.4E-51 1.2E-55 399.1 24.1 217 131-362 5-230 (362)
96 COG4555 NatA ABC-type Na+ tran 100.0 1.9E-51 4.1E-56 358.6 18.2 216 131-361 1-223 (245)
97 cd03219 ABC_Mj1267_LivG_branch 100.0 8.2E-51 1.8E-55 376.8 23.6 219 132-361 1-233 (236)
98 PRK14257 phosphate ABC transpo 100.0 1.2E-50 2.7E-55 392.5 25.8 222 129-362 78-315 (329)
99 PRK11000 maltose/maltodextrin 100.0 8.9E-51 1.9E-55 399.5 25.2 215 131-361 3-224 (369)
100 cd03265 ABC_DrrA DrrA is the A 100.0 1E-50 2.2E-55 372.5 23.9 212 132-358 1-219 (220)
101 PRK13635 cbiO cobalt transport 100.0 1.9E-50 4.1E-55 383.6 26.4 220 131-362 5-231 (279)
102 PRK13652 cbiO cobalt transport 100.0 2.5E-50 5.5E-55 382.5 26.7 220 130-362 2-229 (277)
103 cd03245 ABCC_bacteriocin_expor 100.0 3.9E-50 8.5E-55 368.4 27.1 217 131-353 2-220 (220)
104 PRK15079 oligopeptide ABC tran 100.0 1.9E-50 4.2E-55 391.5 26.4 226 131-367 8-259 (331)
105 TIGR01186 proV glycine betaine 100.0 4.5E-51 9.8E-56 398.9 22.0 208 140-361 2-220 (363)
106 cd03259 ABC_Carb_Solutes_like 100.0 6.8E-51 1.5E-55 371.8 21.5 206 132-353 1-213 (213)
107 cd03258 ABC_MetN_methionine_tr 100.0 1.8E-50 3.8E-55 374.0 24.4 218 132-360 2-230 (233)
108 COG1131 CcmA ABC-type multidru 100.0 1.3E-50 2.8E-55 386.4 24.0 217 131-361 4-227 (293)
109 PRK11607 potG putrescine trans 100.0 1.4E-50 3.1E-55 398.2 25.0 217 130-362 18-241 (377)
110 PRK13651 cobalt transporter AT 100.0 2E-50 4.3E-55 387.5 25.2 219 131-361 2-255 (305)
111 cd03224 ABC_TM1139_LivF_branch 100.0 2.8E-50 6.1E-55 369.8 24.7 214 132-360 1-221 (222)
112 PRK11629 lolD lipoprotein tran 100.0 2.6E-50 5.7E-55 373.0 24.7 213 131-354 5-228 (233)
113 PRK13636 cbiO cobalt transport 100.0 3.4E-50 7.3E-55 382.7 25.9 218 131-361 5-232 (283)
114 cd03263 ABC_subfamily_A The AB 100.0 2.4E-50 5.2E-55 369.9 23.3 212 132-358 1-219 (220)
115 PRK13536 nodulation factor exp 100.0 2.5E-50 5.4E-55 391.8 24.6 215 131-361 41-262 (340)
116 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.9E-50 1.1E-54 371.9 25.0 215 132-361 2-222 (236)
117 cd03268 ABC_BcrA_bacitracin_re 100.0 2.5E-50 5.5E-55 366.7 22.4 205 132-353 1-208 (208)
118 TIGR01288 nodI ATP-binding ABC 100.0 3.9E-50 8.4E-55 385.8 24.7 215 131-361 4-225 (303)
119 cd03226 ABC_cobalt_CbiO_domain 100.0 2.2E-50 4.8E-55 366.3 21.7 201 133-350 1-205 (205)
120 PRK13642 cbiO cobalt transport 100.0 8.3E-50 1.8E-54 378.9 26.4 221 131-362 4-231 (277)
121 cd03218 ABC_YhbG The ABC trans 100.0 6.1E-50 1.3E-54 370.1 24.7 215 132-361 1-223 (232)
122 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.7E-50 8.1E-55 374.0 23.4 217 132-361 1-226 (242)
123 PRK11831 putative ABC transpor 100.0 6.5E-50 1.4E-54 378.1 25.4 226 131-370 7-244 (269)
124 PRK11614 livF leucine/isoleuci 100.0 1E-49 2.2E-54 369.9 26.0 216 131-361 5-227 (237)
125 PRK13641 cbiO cobalt transport 100.0 6.6E-50 1.4E-54 381.4 25.4 219 131-361 2-235 (287)
126 PRK10575 iron-hydroxamate tran 100.0 8E-50 1.7E-54 376.8 25.6 224 131-369 11-245 (265)
127 PRK13632 cbiO cobalt transport 100.0 9E-50 2E-54 377.6 26.0 220 131-362 7-233 (271)
128 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.4E-50 5.2E-55 369.4 21.0 207 132-349 1-218 (218)
129 TIGR00972 3a0107s01c2 phosphat 100.0 5.5E-50 1.2E-54 374.0 23.9 214 132-361 2-233 (247)
130 PRK11308 dppF dipeptide transp 100.0 1.4E-49 3.1E-54 384.9 27.5 227 131-368 5-253 (327)
131 PRK13644 cbiO cobalt transport 100.0 9.3E-50 2E-54 378.0 25.6 216 132-361 2-225 (274)
132 cd03266 ABC_NatA_sodium_export 100.0 6.3E-50 1.4E-54 366.6 23.6 209 132-353 2-218 (218)
133 COG0410 LivF ABC-type branched 100.0 2E-49 4.3E-54 354.4 26.0 225 131-366 3-232 (237)
134 PRK11264 putative amino-acid A 100.0 1.1E-49 2.3E-54 372.5 25.5 216 131-361 3-234 (250)
135 TIGR02211 LolD_lipo_ex lipopro 100.0 6.4E-50 1.4E-54 367.3 23.4 208 132-350 2-220 (221)
136 PRK09493 glnQ glutamine ABC tr 100.0 7.6E-50 1.7E-54 371.4 24.2 215 132-361 2-226 (240)
137 PRK11022 dppD dipeptide transp 100.0 1.1E-49 2.4E-54 385.8 26.2 227 131-368 3-252 (326)
138 cd03301 ABC_MalK_N The N-termi 100.0 5E-50 1.1E-54 366.0 22.4 206 132-353 1-213 (213)
139 PRK13638 cbiO cobalt transport 100.0 1.1E-49 2.4E-54 377.0 25.4 216 132-362 2-227 (271)
140 PRK13633 cobalt transporter AT 100.0 1.2E-49 2.6E-54 378.4 25.8 221 131-362 4-235 (280)
141 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.3E-50 1.1E-54 378.7 22.9 215 133-361 26-251 (269)
142 PRK10070 glycine betaine trans 100.0 9.9E-50 2.1E-54 393.8 25.8 202 149-361 43-255 (400)
143 PRK11231 fecE iron-dicitrate t 100.0 1.3E-49 2.7E-54 373.3 25.2 224 131-370 2-236 (255)
144 PRK14273 phosphate ABC transpo 100.0 1.6E-49 3.5E-54 372.4 25.8 219 131-361 7-239 (254)
145 COG0411 LivG ABC-type branched 100.0 7.2E-51 1.6E-55 366.3 15.9 229 131-366 4-245 (250)
146 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.9E-50 1.3E-54 367.5 22.3 208 132-355 1-218 (220)
147 PRK13548 hmuV hemin importer A 100.0 2.4E-49 5.2E-54 372.1 26.9 217 131-361 2-231 (258)
148 COG1137 YhbG ABC-type (unclass 100.0 1.9E-51 4.1E-56 358.3 11.5 228 129-364 2-232 (243)
149 cd03264 ABC_drug_resistance_li 100.0 7.3E-50 1.6E-54 364.5 22.2 204 132-353 1-211 (211)
150 PRK14247 phosphate ABC transpo 100.0 1.6E-49 3.4E-54 371.5 24.8 220 130-361 2-235 (250)
151 PRK13640 cbiO cobalt transport 100.0 3.5E-49 7.5E-54 375.6 27.5 219 131-361 5-233 (282)
152 PRK10253 iron-enterobactin tra 100.0 2.5E-49 5.4E-54 373.4 26.1 217 131-361 7-234 (265)
153 TIGR02673 FtsE cell division A 100.0 7.8E-50 1.7E-54 364.9 22.0 203 132-348 2-214 (214)
154 PRK14269 phosphate ABC transpo 100.0 1.6E-49 3.5E-54 370.7 24.5 219 131-361 2-231 (246)
155 TIGR02769 nickel_nikE nickel i 100.0 2E-49 4.3E-54 374.1 25.3 228 131-369 2-250 (265)
156 PRK11300 livG leucine/isoleuci 100.0 2.8E-49 6.1E-54 370.8 26.2 217 131-361 5-244 (255)
157 TIGR03005 ectoine_ehuA ectoine 100.0 2E-49 4.3E-54 371.3 25.0 216 132-361 1-237 (252)
158 PRK10895 lipopolysaccharide AB 100.0 2.4E-49 5.3E-54 368.3 25.3 216 131-361 3-227 (241)
159 COG4175 ProV ABC-type proline/ 100.0 4.6E-50 1E-54 370.9 19.8 221 131-362 4-256 (386)
160 PRK13648 cbiO cobalt transport 100.0 2.5E-49 5.5E-54 374.1 25.4 220 131-362 7-233 (269)
161 PRK14242 phosphate transporter 100.0 1.7E-49 3.7E-54 371.9 24.0 219 131-361 6-238 (253)
162 TIGR03411 urea_trans_UrtD urea 100.0 3.4E-49 7.4E-54 367.4 25.8 223 131-360 2-231 (242)
163 TIGR03410 urea_trans_UrtE urea 100.0 3.2E-49 7E-54 364.9 25.4 213 132-358 1-219 (230)
164 cd03248 ABCC_TAP TAP, the Tran 100.0 2.2E-49 4.9E-54 365.0 24.2 215 130-349 10-226 (226)
165 PRK10908 cell division protein 100.0 1.7E-49 3.7E-54 364.9 23.4 206 132-351 2-217 (222)
166 cd03225 ABC_cobalt_CbiO_domain 100.0 1E-49 2.2E-54 363.4 21.4 203 133-348 1-211 (211)
167 PRK10584 putative ABC transpor 100.0 3.6E-49 7.7E-54 364.1 25.1 211 131-352 6-227 (228)
168 PRK13639 cbiO cobalt transport 100.0 3.1E-49 6.8E-54 374.6 25.4 216 132-361 2-227 (275)
169 PRK11124 artP arginine transpo 100.0 3.3E-49 7.2E-54 367.6 25.1 216 131-361 2-231 (242)
170 PRK13649 cbiO cobalt transport 100.0 3E-49 6.6E-54 375.7 25.0 223 131-361 2-235 (280)
171 TIGR03522 GldA_ABC_ATP gliding 100.0 2.3E-49 5.1E-54 380.0 24.3 213 131-360 2-221 (301)
172 TIGR03873 F420-0_ABC_ATP propo 100.0 4.1E-49 8.8E-54 370.1 25.3 214 132-360 2-226 (256)
173 cd03292 ABC_FtsE_transporter F 100.0 1.8E-49 3.9E-54 362.4 22.3 204 132-349 1-214 (214)
174 PRK13645 cbiO cobalt transport 100.0 3.9E-49 8.5E-54 376.5 25.4 222 130-362 5-242 (289)
175 PRK11247 ssuB aliphatic sulfon 100.0 3.8E-49 8.2E-54 370.2 24.9 206 131-356 12-219 (257)
176 PRK10744 pstB phosphate transp 100.0 5.4E-49 1.2E-53 370.1 25.9 221 129-361 11-245 (260)
177 PRK10771 thiQ thiamine transpo 100.0 9.1E-49 2E-53 362.5 26.7 214 132-363 2-222 (232)
178 PRK14267 phosphate ABC transpo 100.0 3.6E-49 7.9E-54 369.7 24.3 219 131-361 4-238 (253)
179 PRK10619 histidine/lysine/argi 100.0 5.1E-49 1.1E-53 369.6 25.3 217 131-361 5-242 (257)
180 PRK15093 antimicrobial peptide 100.0 4.9E-49 1.1E-53 382.1 25.7 227 131-368 3-257 (330)
181 cd03235 ABC_Metallic_Cations A 100.0 1.1E-49 2.3E-54 363.9 19.9 200 133-353 1-213 (213)
182 TIGR01188 drrA daunorubicin re 100.0 2.2E-49 4.7E-54 380.5 22.4 207 139-361 1-214 (302)
183 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.8E-49 1.3E-53 358.5 24.1 204 132-353 1-211 (211)
184 TIGR03415 ABC_choXWV_ATP choli 100.0 5.6E-49 1.2E-53 386.0 25.3 212 136-361 29-255 (382)
185 PRK14235 phosphate transporter 100.0 7.7E-49 1.7E-53 370.4 25.0 221 129-361 17-252 (267)
186 PRK11144 modC molybdate transp 100.0 6.1E-49 1.3E-53 384.5 25.1 213 132-362 2-220 (352)
187 PRK15112 antimicrobial peptide 100.0 1.4E-48 2.9E-53 368.8 26.3 230 131-371 4-252 (267)
188 cd03257 ABC_NikE_OppD_transpor 100.0 8.7E-49 1.9E-53 361.2 24.4 211 132-353 2-228 (228)
189 cd03269 ABC_putative_ATPase Th 100.0 4.2E-49 9E-54 359.2 21.8 203 132-353 1-210 (210)
190 PRK14268 phosphate ABC transpo 100.0 7E-49 1.5E-53 368.9 24.0 220 130-361 11-243 (258)
191 cd03262 ABC_HisP_GlnQ_permease 100.0 4.7E-49 1E-53 359.4 22.0 203 132-349 1-213 (213)
192 PRK09473 oppD oligopeptide tra 100.0 1.2E-48 2.6E-53 379.0 26.1 229 131-368 12-260 (330)
193 PRK09984 phosphonate/organopho 100.0 1.6E-48 3.5E-53 367.2 26.2 225 131-371 4-251 (262)
194 PRK10247 putative ABC transpor 100.0 7.7E-49 1.7E-53 361.4 23.1 212 131-356 7-223 (225)
195 cd03369 ABCC_NFT1 Domain 2 of 100.0 2E-48 4.3E-53 354.1 25.5 203 130-355 5-207 (207)
196 PRK14240 phosphate transporter 100.0 2.3E-48 5.1E-53 363.6 25.7 221 129-361 1-235 (250)
197 PRK14259 phosphate ABC transpo 100.0 2.6E-48 5.6E-53 367.2 26.1 219 131-361 13-254 (269)
198 COG4598 HisP ABC-type histidin 100.0 1.6E-49 3.4E-54 340.7 16.0 217 131-362 6-243 (256)
199 PRK14248 phosphate ABC transpo 100.0 3.3E-48 7.2E-53 366.3 26.4 219 131-361 21-253 (268)
200 PRK14274 phosphate ABC transpo 100.0 3.7E-48 8E-53 364.2 26.1 219 131-361 12-244 (259)
201 TIGR01277 thiQ thiamine ABC tr 100.0 2.7E-48 5.9E-53 354.8 24.5 205 132-354 1-212 (213)
202 PRK13547 hmuV hemin importer A 100.0 3.3E-48 7.2E-53 366.7 25.4 216 132-361 2-245 (272)
203 COG4181 Predicted ABC-type tra 100.0 4.1E-49 8.8E-54 335.7 16.9 211 131-352 6-227 (228)
204 PRK14245 phosphate ABC transpo 100.0 2.7E-48 6E-53 363.2 23.9 219 131-361 3-235 (250)
205 COG0444 DppD ABC-type dipeptid 100.0 1.4E-48 3.1E-53 365.4 21.8 227 132-369 2-253 (316)
206 PRK14251 phosphate ABC transpo 100.0 2.5E-48 5.4E-53 363.6 23.5 219 131-361 4-236 (251)
207 COG1123 ATPase components of v 100.0 1.6E-48 3.4E-53 389.4 23.2 230 131-371 280-531 (539)
208 PRK11248 tauB taurine transpor 100.0 3.4E-48 7.3E-53 363.6 24.2 205 132-355 2-215 (255)
209 PRK14237 phosphate transporter 100.0 4.7E-48 1E-52 365.1 25.3 221 130-362 19-253 (267)
210 TIGR01978 sufC FeS assembly AT 100.0 2.4E-48 5.1E-53 361.8 22.9 217 132-359 1-233 (243)
211 PRK14239 phosphate transporter 100.0 4.7E-48 1E-52 361.9 24.8 219 131-361 5-237 (252)
212 PRK14238 phosphate transporter 100.0 1.3E-47 2.7E-52 362.9 27.6 215 131-361 24-256 (271)
213 PRK14253 phosphate ABC transpo 100.0 5.7E-48 1.2E-52 360.8 24.7 220 130-361 2-234 (249)
214 cd03247 ABCC_cytochrome_bd The 100.0 3.5E-48 7.5E-53 344.5 22.0 178 132-353 1-178 (178)
215 PRK14270 phosphate ABC transpo 100.0 7.6E-48 1.7E-52 360.4 25.4 219 131-361 4-236 (251)
216 PRK11701 phnK phosphonate C-P 100.0 6.9E-48 1.5E-52 362.1 24.9 221 131-361 6-242 (258)
217 cd03246 ABCC_Protease_Secretio 100.0 4.7E-48 1E-52 342.1 22.3 173 132-349 1-173 (173)
218 PRK14249 phosphate ABC transpo 100.0 1E-47 2.2E-52 359.5 25.7 219 131-361 4-236 (251)
219 TIGR02142 modC_ABC molybdenum 100.0 5E-48 1.1E-52 378.5 24.6 211 136-362 4-223 (354)
220 cd03300 ABC_PotA_N PotA is an 100.0 3.3E-48 7.2E-53 358.8 21.8 214 132-361 1-221 (232)
221 PRK10419 nikE nickel transport 100.0 8.5E-48 1.8E-52 363.5 25.0 232 131-369 3-250 (268)
222 PRK14262 phosphate ABC transpo 100.0 7.3E-48 1.6E-52 360.2 24.2 219 131-361 3-235 (250)
223 PRK14241 phosphate transporter 100.0 6.6E-48 1.4E-52 362.3 23.9 219 131-361 4-243 (258)
224 COG4559 ABC-type hemin transpo 100.0 3.8E-48 8.3E-53 340.4 20.5 223 131-369 1-238 (259)
225 TIGR03740 galliderm_ABC gallid 100.0 7.9E-48 1.7E-52 354.1 23.3 207 132-357 1-210 (223)
226 PRK14256 phosphate ABC transpo 100.0 1.3E-47 2.7E-52 359.1 25.0 219 131-361 4-237 (252)
227 PRK14243 phosphate transporter 100.0 1.2E-47 2.7E-52 361.7 25.1 219 131-361 10-249 (264)
228 cd03250 ABCC_MRP_domain1 Domai 100.0 1.3E-47 2.8E-52 348.0 24.2 199 132-348 1-204 (204)
229 PRK14260 phosphate ABC transpo 100.0 8.6E-48 1.9E-52 361.7 23.6 220 130-361 6-244 (259)
230 cd03299 ABC_ModC_like Archeal 100.0 2E-47 4.4E-52 354.2 25.5 213 132-361 1-220 (235)
231 PRK14244 phosphate ABC transpo 100.0 5.6E-48 1.2E-52 361.3 21.9 218 132-361 6-238 (251)
232 PRK14275 phosphate ABC transpo 100.0 1.6E-47 3.4E-52 364.9 25.3 220 130-361 38-271 (286)
233 TIGR00968 3a0106s01 sulfate AB 100.0 1.7E-47 3.6E-52 355.2 24.5 214 132-361 1-221 (237)
234 PRK14236 phosphate transporter 100.0 1.6E-47 3.4E-52 362.4 24.7 220 130-361 24-257 (272)
235 PRK14261 phosphate ABC transpo 100.0 1.7E-47 3.8E-52 358.4 24.3 220 131-362 6-239 (253)
236 PRK14254 phosphate ABC transpo 100.0 4.7E-47 1E-51 361.3 27.2 220 130-361 38-270 (285)
237 PRK14265 phosphate ABC transpo 100.0 4.3E-47 9.3E-52 359.8 26.7 220 130-361 19-259 (274)
238 TIGR02982 heterocyst_DevA ABC 100.0 1.7E-47 3.7E-52 351.2 23.1 207 132-349 2-219 (220)
239 PRK14271 phosphate ABC transpo 100.0 3E-47 6.5E-52 361.1 24.9 219 131-361 21-252 (276)
240 PRK14258 phosphate ABC transpo 100.0 2.8E-47 6.1E-52 358.6 24.5 221 131-361 7-246 (261)
241 cd03291 ABCC_CFTR1 The CFTR su 100.0 2E-46 4.3E-51 355.7 30.5 238 105-369 16-256 (282)
242 PRK14272 phosphate ABC transpo 100.0 4E-47 8.7E-52 355.6 24.8 219 131-361 4-237 (252)
243 PRK14255 phosphate ABC transpo 100.0 3.8E-47 8.3E-52 355.8 24.7 220 131-362 5-238 (252)
244 TIGR02323 CP_lyasePhnK phospho 100.0 6.2E-47 1.3E-51 354.6 25.3 221 131-361 3-239 (253)
245 cd03297 ABC_ModC_molybdenum_tr 100.0 2.5E-47 5.5E-52 348.6 21.8 203 133-353 3-214 (214)
246 cd03290 ABCC_SUR1_N The SUR do 100.0 7.3E-47 1.6E-51 346.5 24.7 209 133-348 2-218 (218)
247 PRK10418 nikD nickel transport 100.0 9E-47 2E-51 353.8 25.6 224 131-371 4-243 (254)
248 PRK14266 phosphate ABC transpo 100.0 7.1E-47 1.5E-51 353.6 24.3 220 130-361 2-235 (250)
249 PRK15439 autoinducer 2 ABC tra 100.0 5.3E-47 1.1E-51 388.4 25.4 215 131-360 11-229 (510)
250 PRK15056 manganese/iron transp 100.0 6.9E-47 1.5E-51 358.0 24.2 212 131-360 6-230 (272)
251 PRK10261 glutathione transport 100.0 6.1E-47 1.3E-51 395.9 26.0 226 131-367 313-561 (623)
252 PRK14263 phosphate ABC transpo 100.0 1.2E-46 2.6E-51 354.3 25.3 220 131-362 8-247 (261)
253 PRK14252 phosphate ABC transpo 100.0 1.2E-46 2.5E-51 355.2 24.9 220 130-361 15-250 (265)
254 cd03230 ABC_DR_subfamily_A Thi 100.0 6.6E-47 1.4E-51 334.8 21.5 171 132-349 1-173 (173)
255 cd03229 ABC_Class3 This class 100.0 7.8E-47 1.7E-51 335.8 21.7 174 132-348 1-178 (178)
256 COG1123 ATPase components of v 100.0 3.9E-47 8.4E-52 379.3 21.3 229 131-368 5-253 (539)
257 cd03234 ABCG_White The White s 100.0 1.1E-46 2.4E-51 347.2 22.7 207 132-353 4-226 (226)
258 PRK09544 znuC high-affinity zi 100.0 2.9E-46 6.2E-51 349.7 25.9 210 131-369 4-217 (251)
259 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-46 2.4E-51 332.7 21.7 171 132-348 1-171 (171)
260 TIGR03608 L_ocin_972_ABC putat 100.0 5.7E-47 1.2E-51 343.9 20.3 196 134-344 1-206 (206)
261 PRK09700 D-allose transporter 100.0 4.3E-47 9.4E-52 389.3 21.7 219 131-360 5-234 (510)
262 PRK13549 xylose transporter AT 100.0 5.3E-47 1.1E-51 388.3 22.1 218 131-359 5-231 (506)
263 PRK14246 phosphate ABC transpo 100.0 1.4E-46 3.1E-51 353.0 23.2 225 131-368 10-250 (257)
264 PRK10762 D-ribose transporter 100.0 1E-46 2.3E-51 385.6 24.1 218 131-359 4-229 (501)
265 PRK14264 phosphate ABC transpo 100.0 2.3E-46 5E-51 359.8 24.8 219 131-361 45-290 (305)
266 PRK03695 vitamin B12-transport 100.0 3.4E-46 7.3E-51 348.7 24.9 216 133-369 2-230 (248)
267 CHL00131 ycf16 sulfate ABC tra 100.0 3.4E-46 7.4E-51 349.3 24.2 212 131-357 7-238 (252)
268 PRK10938 putative molybdenum t 100.0 1.8E-46 3.8E-51 383.1 24.1 213 131-361 3-225 (490)
269 cd03267 ABC_NatA_like Similar 100.0 1.8E-46 3.9E-51 348.1 21.3 195 147-353 34-236 (236)
270 cd03233 ABC_PDR_domain1 The pl 100.0 3.8E-46 8.2E-51 338.0 22.1 193 131-353 3-202 (202)
271 cd03231 ABC_CcmA_heme_exporter 100.0 6.4E-46 1.4E-50 336.2 22.8 196 132-344 1-198 (201)
272 PRK13540 cytochrome c biogenes 100.0 3.8E-46 8.3E-51 337.4 20.8 196 132-343 2-198 (200)
273 cd03215 ABC_Carb_Monos_II This 100.0 4.6E-46 9.9E-51 332.1 20.7 173 131-349 4-182 (182)
274 cd03213 ABCG_EPDR ABCG transpo 100.0 4.8E-46 1E-50 335.3 21.0 184 131-353 3-194 (194)
275 PRK13538 cytochrome c biogenes 100.0 5.3E-46 1.2E-50 337.5 21.5 197 132-344 2-202 (204)
276 TIGR01184 ntrCD nitrate transp 100.0 3.2E-46 6.9E-51 345.1 20.3 193 150-358 1-202 (230)
277 COG4604 CeuD ABC-type enteroch 100.0 4.8E-47 1E-51 329.9 13.9 224 131-369 1-233 (252)
278 PRK10261 glutathione transport 100.0 5.4E-46 1.2E-50 388.8 24.4 220 131-361 12-259 (623)
279 cd03214 ABC_Iron-Siderophores_ 100.0 4.1E-46 8.8E-51 331.8 20.0 179 133-353 1-180 (180)
280 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.3E-45 2.7E-50 334.1 23.3 186 132-359 1-192 (200)
281 PRK09580 sufC cysteine desulfu 100.0 1.1E-45 2.4E-50 345.0 23.6 221 132-358 2-233 (248)
282 PRK15134 microcin C ABC transp 100.0 7.6E-46 1.6E-50 381.7 24.6 220 131-361 5-247 (529)
283 cd03232 ABC_PDR_domain2 The pl 100.0 7.2E-46 1.6E-50 333.6 20.5 183 131-353 3-192 (192)
284 COG4619 ABC-type uncharacteriz 100.0 5.9E-47 1.3E-51 321.6 12.6 205 132-349 4-212 (223)
285 PRK10982 galactose/methyl gala 100.0 5.3E-46 1.1E-50 379.6 22.2 215 134-359 1-222 (491)
286 PRK11288 araG L-arabinose tran 100.0 5.2E-46 1.1E-50 380.5 22.1 214 131-355 4-224 (501)
287 PRK15134 microcin C ABC transp 100.0 6.3E-46 1.4E-50 382.2 22.5 219 131-361 275-516 (529)
288 COG4161 ArtP ABC-type arginine 100.0 3.4E-46 7.5E-51 315.2 16.5 215 131-360 2-230 (242)
289 TIGR02770 nickel_nikD nickel i 100.0 1.2E-45 2.7E-50 341.1 21.3 200 149-361 1-216 (230)
290 COG1129 MglA ABC-type sugar tr 100.0 2E-45 4.3E-50 364.9 23.4 218 131-354 8-228 (500)
291 PRK13543 cytochrome c biogenes 100.0 2.3E-45 5.1E-50 335.7 22.0 198 131-346 11-212 (214)
292 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-45 2.8E-50 377.5 22.1 216 132-358 2-228 (500)
293 COG4608 AppF ABC-type oligopep 100.0 9.3E-46 2E-50 339.7 18.8 197 131-369 4-209 (268)
294 cd03223 ABCD_peroxisomal_ALDP 100.0 2.8E-45 6.1E-50 322.3 21.1 163 132-347 1-163 (166)
295 TIGR03269 met_CoM_red_A2 methy 100.0 1.8E-45 3.9E-50 378.2 23.1 223 131-360 279-517 (520)
296 cd03216 ABC_Carb_Monos_I This 100.0 4.7E-45 1E-49 319.9 22.2 160 132-351 1-162 (163)
297 COG4525 TauB ABC-type taurine 100.0 4.9E-46 1.1E-50 323.2 15.7 209 130-355 2-219 (259)
298 PRK13549 xylose transporter AT 100.0 8.9E-46 1.9E-50 379.2 20.4 221 131-359 259-493 (506)
299 COG4172 ABC-type uncharacteriz 100.0 3.8E-45 8.2E-50 347.3 23.1 225 131-367 276-524 (534)
300 PRK13539 cytochrome c biogenes 100.0 3.6E-45 7.8E-50 332.8 21.5 197 131-346 2-200 (207)
301 TIGR03269 met_CoM_red_A2 methy 100.0 2.2E-45 4.8E-50 377.5 22.5 215 132-360 1-258 (520)
302 TIGR02324 CP_lyasePhnL phospho 100.0 5.3E-45 1.2E-49 335.4 21.2 202 132-344 2-222 (224)
303 COG4152 ABC-type uncharacteriz 100.0 4.9E-46 1.1E-50 333.3 13.8 215 131-360 2-219 (300)
304 PRK09700 D-allose transporter 100.0 2.8E-45 6E-50 375.9 20.4 214 131-357 265-495 (510)
305 TIGR01189 ccmA heme ABC export 100.0 6.1E-45 1.3E-49 329.0 20.1 195 132-343 1-197 (198)
306 TIGR01166 cbiO cobalt transpor 100.0 6.9E-45 1.5E-49 326.5 18.2 176 147-334 5-189 (190)
307 PRK13546 teichoic acids export 100.0 4.6E-44 1E-48 336.9 24.3 212 131-367 4-239 (264)
308 COG3845 ABC-type uncharacteriz 100.0 1.2E-44 2.5E-49 353.0 20.1 217 131-354 4-223 (501)
309 TIGR02633 xylG D-xylose ABC tr 100.0 8.7E-45 1.9E-49 371.5 20.2 224 131-357 257-489 (500)
310 PRK13545 tagH teichoic acids e 100.0 8.1E-44 1.8E-48 356.8 25.7 213 131-368 21-240 (549)
311 TIGR03771 anch_rpt_ABC anchore 100.0 2.4E-44 5.3E-49 331.0 20.0 196 155-369 1-209 (223)
312 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.5E-44 5.4E-49 331.2 19.7 197 131-353 22-224 (224)
313 PRK13541 cytochrome c biogenes 100.0 4.5E-44 9.7E-49 322.6 20.0 190 132-341 2-192 (195)
314 TIGR01257 rim_protein retinal- 100.0 6.2E-44 1.3E-48 401.8 25.7 217 131-361 1937-2160(2272)
315 COG4148 ModC ABC-type molybdat 100.0 1.7E-44 3.6E-49 328.9 16.7 201 150-362 14-220 (352)
316 TIGR01257 rim_protein retinal- 100.0 8.8E-44 1.9E-48 400.6 25.4 216 131-361 928-1150(2272)
317 PRK10762 D-ribose transporter 100.0 5.1E-44 1.1E-48 365.8 19.6 213 131-359 257-483 (501)
318 PRK10535 macrolide transporter 100.0 2.7E-43 5.9E-48 369.8 25.4 217 131-359 4-231 (648)
319 PRK11288 araG L-arabinose tran 100.0 8.7E-44 1.9E-48 364.1 19.7 214 131-359 257-484 (501)
320 PRK15064 ABC transporter ATP-b 100.0 4.3E-43 9.2E-48 361.3 23.7 202 131-361 319-526 (530)
321 PRK15064 ABC transporter ATP-b 100.0 4.2E-43 9.1E-48 361.4 23.5 209 132-360 2-242 (530)
322 PRK11819 putative ABC transpor 100.0 6.9E-43 1.5E-47 361.4 22.7 210 131-360 6-250 (556)
323 PRK15439 autoinducer 2 ABC tra 100.0 3.5E-43 7.5E-48 360.2 19.2 215 131-361 268-493 (510)
324 TIGR01187 potA spermidine/putr 100.0 5.1E-43 1.1E-47 339.3 19.2 184 165-361 1-191 (325)
325 PLN03211 ABC transporter G-25; 100.0 5.7E-43 1.2E-47 366.5 20.1 202 147-360 81-296 (659)
326 cd03237 ABC_RNaseL_inhibitor_d 100.0 2E-42 4.4E-47 322.6 21.6 196 139-359 1-206 (246)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.9E-42 1.1E-46 354.9 25.1 210 131-360 4-248 (552)
328 COG4172 ABC-type uncharacteriz 100.0 2.9E-42 6.3E-47 327.7 21.1 228 131-369 6-257 (534)
329 PRK10938 putative molybdenum t 100.0 1.1E-42 2.5E-47 355.0 19.6 209 131-353 260-485 (490)
330 PRK10982 galactose/methyl gala 100.0 1.1E-42 2.3E-47 355.3 19.3 214 131-357 250-477 (491)
331 cd03236 ABC_RNaseL_inhibitor_d 100.0 8.5E-43 1.8E-47 326.6 16.3 203 135-353 4-220 (255)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.7E-41 3.6E-46 291.4 19.2 143 132-348 1-144 (144)
333 PRK15177 Vi polysaccharide exp 100.0 1.8E-41 3.9E-46 309.9 20.2 187 149-361 2-193 (213)
334 PRK13409 putative ATPase RIL; 100.0 2.6E-41 5.6E-46 350.0 22.8 195 131-354 340-536 (590)
335 COG1119 ModF ABC-type molybden 100.0 1.4E-41 2.9E-46 306.3 16.9 212 130-354 30-256 (257)
336 TIGR00955 3a01204 The Eye Pigm 100.0 1.3E-41 2.9E-46 355.4 19.1 203 146-359 37-255 (617)
337 PRK11819 putative ABC transpor 100.0 6.9E-41 1.5E-45 346.5 23.9 202 131-361 324-534 (556)
338 COG1101 PhnK ABC-type uncharac 100.0 1.3E-41 2.9E-46 299.8 15.6 219 132-354 2-232 (263)
339 COG4674 Uncharacterized ABC-ty 100.0 1.6E-41 3.4E-46 295.0 15.8 227 131-364 5-239 (249)
340 COG4167 SapF ABC-type antimicr 100.0 4.8E-41 1E-45 289.2 18.6 232 131-372 4-253 (267)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.3E-41 1.8E-45 345.7 24.0 202 131-360 322-531 (552)
342 PRK10636 putative ABC transpor 100.0 2.2E-40 4.8E-45 347.1 22.8 199 131-359 312-516 (638)
343 PRK11147 ABC transporter ATPas 100.0 3.9E-40 8.4E-45 345.6 23.7 200 131-359 319-527 (635)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 1.9E-40 4E-45 293.7 18.0 156 135-359 4-162 (177)
345 TIGR00956 3a01205 Pleiotropic 100.0 1.9E-40 4E-45 371.5 21.9 212 131-356 759-989 (1394)
346 COG4178 ABC-type uncharacteriz 100.0 2.7E-38 5.9E-43 319.5 35.1 323 3-345 256-587 (604)
347 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1E-39 2.2E-44 284.1 20.4 155 134-348 2-157 (157)
348 PLN03073 ABC transporter F fam 100.0 6.7E-40 1.4E-44 345.4 23.0 200 130-358 507-712 (718)
349 PRK10636 putative ABC transpor 100.0 1E-39 2.3E-44 342.0 24.2 209 132-360 2-236 (638)
350 COG0396 sufC Cysteine desulfur 100.0 5.7E-39 1.2E-43 286.2 20.9 217 130-360 2-233 (251)
351 PRK11147 ABC transporter ATPas 100.0 4.3E-39 9.3E-44 337.7 23.3 209 130-360 2-243 (635)
352 COG4136 ABC-type uncharacteriz 100.0 1.7E-39 3.6E-44 271.5 15.4 198 131-344 2-207 (213)
353 PLN03140 ABC transporter G fam 100.0 4.2E-38 9.1E-43 352.0 25.7 213 131-356 867-1106(1470)
354 cd03238 ABC_UvrA The excision 100.0 3.6E-38 7.8E-43 278.8 19.4 156 147-349 8-166 (176)
355 COG4586 ABC-type uncharacteriz 100.0 4.4E-39 9.6E-44 292.8 12.7 203 147-361 37-247 (325)
356 COG0488 Uup ATPase components 100.0 7.5E-38 1.6E-42 317.5 22.0 211 129-360 1-240 (530)
357 PRK13409 putative ATPase RIL; 100.0 8.9E-39 1.9E-43 331.1 14.3 192 136-347 78-287 (590)
358 COG4107 PhnK ABC-type phosphon 100.0 2.4E-38 5.1E-43 270.7 14.4 228 131-371 6-253 (258)
359 COG4615 PvdE ABC-type sideroph 100.0 9.8E-37 2.1E-41 289.1 26.7 273 65-353 258-530 (546)
360 COG1134 TagH ABC-type polysacc 100.0 1.3E-37 2.8E-42 280.8 19.8 191 147-360 40-236 (249)
361 TIGR00956 3a01205 Pleiotropic 100.0 8.5E-38 1.8E-42 350.1 20.4 205 147-358 74-298 (1394)
362 PLN03073 ABC transporter F fam 100.0 1.9E-37 4.2E-42 326.8 20.0 221 130-359 176-430 (718)
363 PLN03140 ABC transporter G fam 100.0 4.2E-37 9.1E-42 344.0 18.8 208 147-359 178-426 (1470)
364 KOG0061 Transporter, ABC super 100.0 1.3E-36 2.9E-41 315.7 19.1 218 131-359 25-259 (613)
365 COG4133 CcmA ABC-type transpor 100.0 1.2E-36 2.5E-41 263.6 12.2 189 132-336 3-194 (209)
366 COG0488 Uup ATPase components 100.0 6.2E-34 1.3E-38 288.9 25.8 202 130-360 320-525 (530)
367 KOG0059 Lipid exporter ABCA1 a 100.0 3.7E-35 8E-40 316.8 17.7 217 131-361 564-788 (885)
368 KOG0060 Long-chain acyl-CoA tr 100.0 8.6E-33 1.9E-37 273.1 30.7 328 3-346 276-641 (659)
369 COG4778 PhnL ABC-type phosphon 100.0 2.6E-35 5.7E-40 251.0 10.9 205 131-346 4-227 (235)
370 cd03270 ABC_UvrA_I The excisio 100.0 1.9E-34 4.1E-39 265.8 17.0 192 147-353 8-226 (226)
371 PF00005 ABC_tran: ABC transpo 100.0 1.2E-34 2.5E-39 246.0 10.6 134 150-298 1-137 (137)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 1.2E-33 2.6E-38 255.0 12.7 164 151-346 14-190 (197)
373 cd03271 ABC_UvrA_II The excisi 100.0 3.3E-33 7.1E-38 261.4 16.0 195 148-355 9-261 (261)
374 COG4138 BtuD ABC-type cobalami 100.0 2E-34 4.3E-39 246.7 5.3 212 131-362 3-223 (248)
375 COG1129 MglA ABC-type sugar tr 100.0 2.3E-31 5E-36 264.6 19.6 217 131-357 263-487 (500)
376 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.8E-31 3.9E-36 243.9 14.2 191 131-348 5-210 (213)
377 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.8E-31 6.1E-36 247.0 12.0 190 131-345 3-234 (243)
378 cd03273 ABC_SMC2_euk Eukaryoti 100.0 1.2E-30 2.5E-35 244.3 13.0 199 131-345 5-242 (251)
379 cd03240 ABC_Rad50 The catalyti 100.0 6.8E-30 1.5E-34 231.8 13.3 165 153-346 16-197 (204)
380 KOG0927 Predicted transporter 100.0 3.3E-30 7.2E-35 253.3 10.0 200 130-356 388-592 (614)
381 KOG0064 Peroxisomal long-chain 100.0 6.3E-28 1.4E-32 236.0 22.7 317 3-344 314-681 (728)
382 cd03274 ABC_SMC4_euk Eukaryoti 100.0 3E-30 6.4E-35 235.4 5.5 185 131-346 5-204 (212)
383 COG4170 SapD ABC-type antimicr 100.0 8.8E-29 1.9E-33 217.8 13.5 228 131-369 3-258 (330)
384 PRK00635 excinuclease ABC subu 100.0 5E-28 1.1E-32 269.7 20.7 214 131-361 600-907 (1809)
385 PRK00349 uvrA excinuclease ABC 100.0 4.4E-28 9.5E-33 260.1 17.7 111 252-365 812-932 (943)
386 COG3845 ABC-type uncharacteriz 100.0 2.4E-27 5.2E-32 231.9 19.3 217 131-357 257-489 (501)
387 KOG0065 Pleiotropic drug resis 100.0 7.4E-29 1.6E-33 264.8 8.1 212 133-357 789-1018(1391)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.3E-27 2.8E-32 223.2 13.1 202 131-346 3-233 (247)
389 COG1245 Predicted ATPase, RNas 99.9 1.8E-26 3.8E-31 223.0 16.4 172 149-345 351-530 (591)
390 TIGR00630 uvra excinuclease AB 99.9 1.9E-26 4.2E-31 247.0 18.3 89 267-358 826-923 (924)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.9 9.3E-27 2E-31 210.3 11.8 177 149-348 11-192 (198)
392 KOG0927 Predicted transporter 99.9 6.2E-26 1.3E-30 223.2 16.7 218 130-360 74-309 (614)
393 KOG0062 ATPase component of AB 99.9 6.7E-26 1.5E-30 221.9 16.5 195 130-351 361-559 (582)
394 KOG0062 ATPase component of AB 99.9 2.7E-26 5.7E-31 224.7 8.8 199 131-360 80-285 (582)
395 KOG0066 eIF2-interacting prote 99.9 1.5E-25 3.3E-30 215.3 13.2 198 131-357 586-788 (807)
396 KOG2355 Predicted ABC-type tra 99.9 2.7E-23 5.8E-28 182.6 15.9 206 131-353 13-230 (291)
397 cd03239 ABC_SMC_head The struc 99.9 2.4E-23 5.2E-28 184.8 13.9 84 256-346 85-172 (178)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.5E-23 3.3E-28 189.6 12.2 147 149-353 16-172 (200)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.6E-22 5.5E-27 183.3 12.8 183 150-348 14-211 (213)
400 cd03241 ABC_RecN RecN ATPase i 99.9 1.6E-22 3.4E-27 191.9 11.8 77 269-349 170-250 (276)
401 KOG0065 Pleiotropic drug resis 99.9 1.7E-22 3.7E-27 216.4 10.7 205 147-360 128-351 (1391)
402 COG1245 Predicted ATPase, RNas 99.9 4.3E-22 9.3E-27 192.8 11.7 190 136-346 79-288 (591)
403 cd03227 ABC_Class2 ABC-type Cl 99.9 1.8E-21 3.8E-26 170.3 11.1 137 153-346 14-155 (162)
404 COG2401 ABC-type ATPase fused 99.9 3.8E-21 8.2E-26 184.3 13.7 180 147-349 396-587 (593)
405 PRK00635 excinuclease ABC subu 99.9 5.5E-21 1.2E-25 213.9 16.1 111 252-365 1681-1801(1809)
406 COG0178 UvrA Excinuclease ATPa 99.9 1.3E-20 2.9E-25 193.2 16.7 110 256-368 808-927 (935)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.8 3.9E-21 8.5E-26 176.5 9.5 152 148-354 18-175 (222)
408 cd03283 ABC_MutS-like MutS-lik 99.8 6.9E-21 1.5E-25 172.1 7.7 144 148-344 15-163 (199)
409 cd03243 ABC_MutS_homologs The 99.8 2.3E-20 5.1E-25 169.1 7.3 155 151-357 20-176 (202)
410 cd03242 ABC_RecF RecF is a rec 99.8 4.6E-19 1E-23 167.7 16.0 74 269-349 183-269 (270)
411 PRK00349 uvrA excinuclease ABC 99.8 9.7E-19 2.1E-23 188.3 14.2 106 253-361 472-586 (943)
412 TIGR00630 uvra excinuclease AB 99.8 1.7E-18 3.6E-23 186.2 14.8 105 254-361 471-584 (924)
413 KOG0066 eIF2-interacting prote 99.8 1.2E-19 2.6E-24 174.8 5.3 203 131-352 264-490 (807)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.8 1.9E-18 4.1E-23 156.7 10.4 139 147-337 16-156 (204)
415 KOG0063 RNAse L inhibitor, ABC 99.7 2.1E-17 4.6E-22 159.2 14.4 182 139-346 343-532 (592)
416 TIGR02858 spore_III_AA stage I 99.7 1E-17 2.3E-22 157.6 11.9 142 161-359 112-268 (270)
417 cd03284 ABC_MutS1 MutS1 homolo 99.7 7.2E-18 1.6E-22 154.3 9.4 155 148-358 19-179 (216)
418 cd01128 rho_factor Transcripti 99.7 3E-18 6.4E-23 159.5 5.4 195 155-369 11-226 (249)
419 cd00820 PEPCK_HprK Phosphoenol 99.7 7.1E-18 1.5E-22 136.0 6.2 77 147-231 2-78 (107)
420 PRK00064 recF recombination pr 99.7 1.8E-15 3.8E-20 148.9 17.7 75 269-349 273-359 (361)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.7 1.8E-15 3.8E-20 138.2 14.3 137 149-337 18-159 (213)
422 TIGR01069 mutS2 MutS2 family p 99.6 3.5E-15 7.5E-20 158.9 14.8 147 131-336 295-449 (771)
423 PRK07721 fliI flagellum-specif 99.6 2E-14 4.2E-19 143.7 17.0 180 147-357 146-340 (438)
424 PF02463 SMC_N: RecF/RecN/SMC 99.6 1.6E-15 3.5E-20 138.9 8.5 72 269-344 136-211 (220)
425 smart00534 MUTSac ATPase domai 99.6 8.5E-16 1.8E-20 137.3 6.4 70 268-340 60-130 (185)
426 TIGR00606 rad50 rad50. This fa 99.6 8.6E-15 1.9E-19 165.2 14.0 122 219-345 1153-1289(1311)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.5 6.4E-14 1.4E-18 128.5 10.8 137 148-336 19-158 (222)
428 PTZ00132 GTP-binding nuclear p 99.5 9.6E-15 2.1E-19 133.3 5.0 44 273-316 156-204 (215)
429 KOG0063 RNAse L inhibitor, ABC 99.5 2.5E-14 5.4E-19 138.2 7.5 173 157-346 97-288 (592)
430 TIGR00634 recN DNA repair prot 99.5 6.9E-14 1.5E-18 145.3 9.5 76 269-348 440-519 (563)
431 PRK00409 recombination and DNA 99.5 1.1E-13 2.3E-18 147.9 8.7 73 268-344 389-463 (782)
432 PRK10869 recombination and rep 99.5 2.4E-13 5.1E-18 140.5 10.3 76 269-348 430-509 (553)
433 PHA02562 46 endonuclease subun 99.4 1.5E-13 3.2E-18 142.9 8.1 77 268-349 467-555 (562)
434 COG0178 UvrA Excinuclease ATPa 99.4 7.6E-13 1.7E-17 136.7 12.8 111 252-365 463-582 (935)
435 PRK14079 recF recombination pr 99.4 4.8E-12 1E-16 124.0 17.5 74 270-352 264-346 (349)
436 PRK08533 flagellar accessory p 99.4 3.5E-12 7.6E-17 117.8 13.5 157 132-345 8-184 (230)
437 PRK13695 putative NTPase; Prov 99.4 5.2E-13 1.1E-17 118.0 7.0 77 269-352 78-156 (174)
438 TIGR00618 sbcc exonuclease Sbc 99.4 1.4E-12 3.1E-17 144.5 10.5 77 268-347 949-1036(1042)
439 TIGR02788 VirB11 P-type DNA tr 99.3 2.8E-12 6.1E-17 123.6 8.7 145 153-360 137-281 (308)
440 PRK03918 chromosome segregatio 99.3 3.8E-12 8.3E-17 139.1 10.0 76 268-346 787-868 (880)
441 cd03286 ABC_MSH6_euk MutS6 hom 99.3 8.4E-12 1.8E-16 114.2 10.2 138 148-337 18-158 (218)
442 PRK01156 chromosome segregatio 99.3 6.7E-12 1.5E-16 137.4 11.1 78 267-345 799-883 (895)
443 TIGR03238 dnd_assoc_3 dnd syst 99.3 1.9E-12 4.1E-17 128.7 4.2 67 148-217 20-87 (504)
444 PF13304 AAA_21: AAA domain; P 99.3 4.2E-12 9.1E-17 116.3 5.6 64 269-335 236-302 (303)
445 cd01124 KaiC KaiC is a circadi 99.3 3.9E-11 8.5E-16 106.6 11.7 75 268-345 70-163 (187)
446 COG3910 Predicted ATPase [Gene 99.2 1.4E-10 3E-15 101.4 12.7 78 269-350 129-207 (233)
447 PRK06793 fliI flagellum-specif 99.2 4.4E-11 9.5E-16 119.0 10.1 169 131-354 130-305 (432)
448 PRK10246 exonuclease subunit S 99.2 3.9E-11 8.5E-16 132.7 10.6 77 267-346 947-1032(1047)
449 TIGR02168 SMC_prok_B chromosom 99.2 2E-11 4.3E-16 136.8 8.2 74 268-345 1088-1165(1179)
450 PRK13830 conjugal transfer pro 99.2 9.7E-11 2.1E-15 126.5 12.9 69 284-355 649-728 (818)
451 cd01120 RecA-like_NTPases RecA 99.2 1.5E-10 3.2E-15 99.7 10.9 129 162-335 1-140 (165)
452 PRK02224 chromosome segregatio 99.1 2E-10 4.3E-15 125.7 9.1 77 268-347 780-869 (880)
453 PRK06067 flagellar accessory p 99.1 5.2E-10 1.1E-14 103.5 10.4 74 269-345 100-186 (234)
454 TIGR02169 SMC_prok_A chromosom 99.1 1.8E-10 3.8E-15 129.3 8.6 75 268-346 1073-1151(1164)
455 cd01131 PilT Pilus retraction 99.1 3.8E-10 8.3E-15 101.9 8.9 118 162-344 3-121 (198)
456 PRK06002 fliI flagellum-specif 99.0 7E-10 1.5E-14 110.7 7.7 85 130-217 138-229 (450)
457 smart00382 AAA ATPases associa 99.0 3.7E-08 7.9E-13 81.5 15.2 119 159-331 1-125 (148)
458 TIGR02655 circ_KaiC circadian 98.9 1.4E-10 3.1E-15 118.4 -0.2 157 156-345 17-190 (484)
459 TIGR00767 rho transcription te 98.9 4.3E-09 9.3E-14 103.3 8.6 82 98-186 102-194 (415)
460 PRK00300 gmk guanylate kinase; 98.9 5.6E-09 1.2E-13 94.4 8.8 65 158-227 3-79 (205)
461 PRK07196 fliI flagellum-specif 98.9 1.9E-09 4.2E-14 107.4 4.8 82 147-229 143-234 (434)
462 TIGR00611 recf recF protein. A 98.8 4.5E-09 9.8E-14 103.6 6.5 62 269-336 275-345 (365)
463 cd01125 repA Hexameric Replica 98.8 3.4E-09 7.4E-14 98.5 4.9 46 284-332 108-159 (239)
464 PRK06995 flhF flagellar biosyn 98.8 8.4E-09 1.8E-13 104.2 7.9 63 149-230 245-307 (484)
465 cd01130 VirB11-like_ATPase Typ 98.8 5.6E-09 1.2E-13 93.3 4.8 79 149-230 14-95 (186)
466 PRK10733 hflB ATP-dependent me 98.8 7.6E-09 1.7E-13 109.1 6.4 106 45-184 101-209 (644)
467 TIGR01026 fliI_yscN ATPase Fli 98.8 8.8E-08 1.9E-12 96.2 13.0 177 147-357 151-345 (440)
468 PRK13891 conjugal transfer pro 98.7 3.6E-07 7.7E-12 99.5 18.0 54 280-336 680-734 (852)
469 PRK05399 DNA mismatch repair p 98.7 3E-07 6.5E-12 99.9 16.2 136 148-339 596-737 (854)
470 COG0419 SbcC ATPase involved i 98.7 4.8E-08 1E-12 107.2 9.8 78 267-347 813-898 (908)
471 cd02023 UMPK Uridine monophosp 98.7 2E-08 4.3E-13 90.4 4.9 33 268-303 82-114 (198)
472 PF09818 ABC_ATPase: Predicted 98.7 2.5E-07 5.5E-12 91.2 12.8 173 137-350 227-417 (448)
473 PRK09825 idnK D-gluconate kina 98.7 2.5E-08 5.5E-13 88.3 5.1 66 159-230 2-69 (176)
474 TIGR01420 pilT_fam pilus retra 98.7 1E-07 2.2E-12 93.3 9.8 120 157-341 119-239 (343)
475 PRK10078 ribose 1,5-bisphospho 98.6 3.3E-08 7.3E-13 88.2 5.6 55 160-217 2-56 (186)
476 PRK08149 ATP synthase SpaL; Va 98.6 3.3E-08 7.2E-13 98.5 5.6 70 147-217 139-215 (428)
477 TIGR02680 conserved hypothetic 98.6 4.7E-08 1E-12 110.8 7.5 60 268-333 1246-1317(1353)
478 PLN03210 Resistant to P. syrin 98.6 1.4E-07 3E-12 106.1 10.1 148 152-345 199-349 (1153)
479 TIGR03881 KaiC_arch_4 KaiC dom 98.6 3E-08 6.5E-13 91.3 4.0 58 156-217 16-77 (229)
480 PRK01889 GTPase RsgA; Reviewed 98.6 7.5E-08 1.6E-12 94.7 6.0 80 149-231 184-263 (356)
481 TIGR02903 spore_lon_C ATP-depe 98.6 2.4E-07 5.3E-12 97.2 10.0 110 159-314 174-291 (615)
482 TIGR02524 dot_icm_DotB Dot/Icm 98.5 2.6E-07 5.7E-12 90.7 7.5 72 158-230 132-211 (358)
483 PRK13898 type IV secretion sys 98.5 5.3E-06 1.2E-10 90.1 18.0 50 283-335 638-688 (800)
484 TIGR00235 udk uridine kinase. 98.5 8.6E-08 1.9E-12 87.1 3.5 29 158-186 4-32 (207)
485 PRK06315 type III secretion sy 98.4 1.3E-07 2.9E-12 94.6 4.1 83 147-230 152-252 (442)
486 TIGR02322 phosphon_PhnN phosph 98.4 4.2E-07 9E-12 80.4 6.8 60 160-220 1-76 (179)
487 PRK09862 putative ATP-dependen 98.4 2.4E-07 5.3E-12 94.4 4.5 63 134-199 187-249 (506)
488 PRK07594 type III secretion sy 98.4 2.6E-07 5.7E-12 92.3 4.6 64 131-197 129-192 (433)
489 PLN02796 D-glycerate 3-kinase 98.4 1.2E-07 2.6E-12 91.7 2.1 60 148-207 80-150 (347)
490 TIGR00416 sms DNA repair prote 98.4 1.1E-06 2.3E-11 89.1 8.8 42 156-197 90-132 (454)
491 PRK09270 nucleoside triphospha 98.4 4.4E-07 9.6E-12 83.8 5.2 54 159-216 32-89 (229)
492 PF13555 AAA_29: P-loop contai 98.4 2.9E-07 6.3E-12 66.7 3.1 39 150-188 12-51 (62)
493 cd01136 ATPase_flagellum-secre 98.4 4.9E-07 1.1E-11 87.3 5.4 58 137-197 49-106 (326)
494 PRK10416 signal recognition pa 98.4 3.9E-07 8.5E-12 88.1 4.7 72 158-229 112-190 (318)
495 COG3044 Predicted ATPase of th 98.4 9E-06 1.9E-10 79.2 13.8 163 154-350 237-412 (554)
496 cd00009 AAA The AAA+ (ATPases 98.3 4.6E-06 1E-10 69.5 10.2 58 275-333 72-131 (151)
497 TIGR00554 panK_bact pantothena 98.3 8.2E-07 1.8E-11 84.6 5.2 51 162-213 64-116 (290)
498 PF00664 ABC_membrane: ABC tra 98.3 9.1E-06 2E-10 74.5 12.0 85 2-86 190-275 (275)
499 cd01121 Sms Sms (bacterial rad 98.3 3.3E-06 7.1E-11 83.4 9.3 41 156-196 78-119 (372)
500 PRK09099 type III secretion sy 98.3 9.8E-07 2.1E-11 88.5 5.3 52 147-199 151-202 (441)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-83 Score=646.51 Aligned_cols=366 Identities=47% Similarity=0.762 Sum_probs=343.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+||||+|++|+++.+||.+..++..+...+.....+.+.....+......+.++++|++++..|.||+|.+.+|++|..+
T Consensus 337 ~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~ 416 (716)
T KOG0058|consen 337 MRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQ 416 (716)
T ss_pred hhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHH
Confidence 79999999999999999999999999988887777777777777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..++..++..+.+++++..|.+|+++++|.+|..+.. +...| ...+.|+|+||+|+||.+++.++|+|+||+|+||
T Consensus 417 ~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG 494 (716)
T KOG0058|consen 417 LGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG 494 (716)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCC
Confidence 99999999999999999999999999999999875432 33223 3456899999999999988889999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++|||||||+||||++++|.++|+|++|+|++||+|+.+++..++|++||+|.|+|.||++||+|||.||.. ..++++
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~ 573 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEE 573 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976 788999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+..+++.+++++|+..+|+||+|.+|+ .+|||||||||||||||++||.||||||+||+||.+++..+.+.|.++.
T Consensus 574 i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-- 651 (716)
T KOG0058|consen 574 IEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-- 651 (716)
T ss_pred HHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh--
Confidence 999999999999999999999999996 4899999999999999999999999999999999999999999998874
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC-HHHHHHHHHHhh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLVKRQTE 374 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~~ 374 (377)
+++|||+|+|++++++.||+|+++++|+++|.|+|+|++++. +.|.++.++|..
T Consensus 652 --~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 652 --QGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred --cCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcc
Confidence 478999999999999999999999999999999999999987 799999998754
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.9e-78 Score=630.15 Aligned_cols=365 Identities=39% Similarity=0.609 Sum_probs=339.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+.+.|.++..+|++...+......+..........+..++..+..++++|+|+++|++|.+|+|.++||.++...
T Consensus 342 i~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~ 421 (709)
T COG2274 342 IETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGY 421 (709)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 68999999999999999999999999988888777777777788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+.+++..+.++++...+.+|+.++++.|+|...+......+...+.|+++||+|+|+.. +.++|+|+||+|++||
T Consensus 422 f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge 500 (709)
T COG2274 422 FISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGE 500 (709)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCC
Confidence 999999999999999999999999999999998854322112234455689999999999865 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+|+||||||||+|+|+|+|+|++|+|++||.|+..++...+|++||||+|++.+|++||+|||+++.+ ..+++++
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p-~~~~e~i 579 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP-EATDEEI 579 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999954 6778999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++++++..+|.||+|.+++ .+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|.++.
T Consensus 580 ~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--- 656 (709)
T COG2274 580 IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--- 656 (709)
T ss_pred HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh---
Confidence 99999999999999999999999984 6899999999999999999999999999999999999999999999984
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
.|+|+|+|||++++++.||||+||++|+|+++|+|+|+++.++.|.+++..|
T Consensus 657 -~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 657 -QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred -cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 5799999999999999999999999999999999999999999999999875
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-75 Score=618.21 Aligned_cols=367 Identities=44% Similarity=0.629 Sum_probs=337.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
||||++|++|+++.+.|.+..+...+...+...+.++..++.+.+..+..++.+|+|++++..|.+++.+++-.++.+..
T Consensus 857 IrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ 936 (1228)
T KOG0055|consen 857 IRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSF 936 (1228)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999998988888888888899999999999999999999998766655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
-...+........++..+..|+.++++++|.+|..+.+. .+...+...+.|+++||+|+||.+++.+||+|+||+|++|
T Consensus 937 ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~G 1016 (1228)
T KOG0055|consen 937 TAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAG 1016 (1228)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCC
Confidence 555566777778899999999999999999998644322 2222344567899999999999988889999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
+.+||||||||||||.+.+|-++|+|++|.|.+||+|+++++++++|++||.|.|+|.||+.||+|||+||.. +.+.++
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~e 1095 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEE 1095 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999943 478999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.+++++|+..+|.||||.+|+ .+||||||||+|||||+++||+||||||+||+||.++++.+++.|.+..
T Consensus 1096 Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-- 1173 (1228)
T KOG0055|consen 1096 IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-- 1173 (1228)
T ss_pred HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--
Confidence 999999999999999999999999994 6899999999999999999999999999999999999999999999984
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
.|+|+|+|+|+++++++||.|+|+++|+|+|.|+|++|++.++.|.++++.|.
T Consensus 1174 --~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1174 --EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred --cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 58999999999999999999999999999999999999999999999998775
No 4
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.8e-72 Score=595.81 Aligned_cols=360 Identities=34% Similarity=0.467 Sum_probs=325.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+++..+|++...+..+...+..+.......+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 324 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~ 403 (686)
T TIGR03797 324 ISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGS 403 (686)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998888877777666665555566666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++.... ........+.|+++||+|+|++. ++++|+|+||+|++||
T Consensus 404 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge 480 (686)
T TIGR03797 404 FSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA--KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGE 480 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCC
Confidence 99999999999999999999999999999877653211 11111223469999999999753 3579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+++..++|++||||||++.+|++|++|||.++.+ .+++++
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--~~~e~i 558 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--LTLDEA 558 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC--CCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854 678999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|++||||||||+||+.+++++.+.|+++
T Consensus 559 ~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---- 634 (686)
T TIGR03797 559 WEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---- 634 (686)
T ss_pred HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----
Confidence 99999999999999999999999974 689999999999999999999999999999999999999999999875
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|++++..|
T Consensus 635 --~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 635 --KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred --CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 469999999999999999999999999999999999999999999998865
No 5
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.7e-72 Score=583.25 Aligned_cols=364 Identities=27% Similarity=0.405 Sum_probs=310.5
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL--------- 72 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l--------- 72 (377)
+++||+|+.|+.+.++|.+..++..+...+..+...........+..+..+++++++++.+. |.+|+|.+
T Consensus 212 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~ 290 (588)
T PRK11174 212 LETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAG 290 (588)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHH
Confidence 58999999999999999999998888777665554444444444444444444455555443 77887754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEEEEEEEEEcCCCCCCCcee
Q 017091 73 TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILN 151 (377)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~vL~ 151 (377)
++++++...+..|+..+...+..+..+..+++|+.++++.+++..... ....+ .....|+++||+|.|+++ +++|+
T Consensus 291 ~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~ 367 (588)
T PRK11174 291 FFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPDG--KTLAG 367 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccCC--Ceeee
Confidence 223356677889999999999999999999999999998865432111 11111 122359999999877543 46999
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 231 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~ 231 (377)
|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||+++.+++..++|++|+||||+|++|++||+|||.++
T Consensus 368 ~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g 446 (588)
T PRK11174 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLG 446 (588)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcC
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~ 309 (377)
. ++.++++++++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|+|||||||||+||+++++.+.
T Consensus 447 ~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~ 525 (588)
T PRK11174 447 N-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525 (588)
T ss_pred C-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 5 4678999999999999999999999999999975 589999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhhc
Q 017091 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 375 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 375 (377)
+.|.++. +++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|++++..|.+.
T Consensus 526 ~~l~~~~----~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 526 QALNAAS----RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred HHHHHHh----CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 9998874 4789999999999999999999999999999999999999999999999988764
No 6
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.2e-72 Score=581.13 Aligned_cols=364 Identities=44% Similarity=0.717 Sum_probs=330.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
++++|+|+.++.+.+++.+..++......+..+..+...+....+..+..++++++|++++..+.+++|.+++++.|...
T Consensus 201 ~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 280 (567)
T COG1132 201 IRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLR 280 (567)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 57899999999999999998888888777666666666666677777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+++|++++++.+++....... .....+.|+++||+|+|+++ +++|+|+||++++||
T Consensus 281 ~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~~--~~vl~~is~~i~~Ge 356 (567)
T COG1132 281 LLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGK--KPVLKDISFSIEPGE 356 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCCC--CccccCceEEEcCCC
Confidence 99999999999999999999999999999987653322111 12233469999999999852 479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++|||||||||||||+++|+|+++|++|+|.+||+|+++++...+|++|+||||++++|++||+|||.+|.+ +.+++++
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei 435 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEI 435 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 5789999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++++++.++|.|++|.+++ .+||||||||++||||++++|++||||||||+||+.+++.+++.+.++.
T Consensus 436 ~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--- 512 (567)
T COG1132 436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--- 512 (567)
T ss_pred HHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh---
Confidence 99999999999999999999999984 5899999999999999999999999999999999999999999999774
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+++|+|+|+|++++++.||+|+||++|++++.|+|++++++++.|+++|..|..
T Consensus 513 -~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 513 -KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGG 566 (567)
T ss_pred -cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhhc
Confidence 367999999999999999999999999999999999999999999999998753
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-73 Score=605.15 Aligned_cols=367 Identities=43% Similarity=0.650 Sum_probs=332.9
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+|||.+|+.|+.+.++|.+..+...+...+...+.++..++..++.....++.+|+|+.++..+..++|+++..+..+..
T Consensus 220 iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~ 299 (1228)
T KOG0055|consen 220 IRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLI 299 (1228)
T ss_pred hhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhh
Confidence 68999999999999999999999999998888888888887777777888999999999999999999987655544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
-...+....+.+..+..+..++.+++++++..|...... .+.......+.|+++||+|+||.+++.++|+|+||+|++|
T Consensus 300 g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G 379 (1228)
T KOG0055|consen 300 GGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG 379 (1228)
T ss_pred hhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCC
Confidence 445566778888999999999999999999887644322 1212223456899999999999987789999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
+++||||||||||||++++|.|+|+|++|+|++||.|+..++.+++|.+||.|+|+|.||+.||+|||.||. ++.+.++
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~-~dat~~~ 458 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGK-PDATREE 458 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCC-CcccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 5789999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.+++++|+..+|.|++|.+++ .+|||||||||||||||+++|+|||||||||+||+++++.+++.|.+..
T Consensus 459 i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-- 536 (1228)
T KOG0055|consen 459 IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-- 536 (1228)
T ss_pred HHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--
Confidence 999999999999999999999999985 4799999999999999999999999999999999999999999999884
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
.|+|.|+|+||+++++.||+|++|++|+|+|.|+|+||+..++.|.+++..|.
T Consensus 537 --~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 537 --KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred --cCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999998763
No 8
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6.8e-72 Score=593.26 Aligned_cols=362 Identities=30% Similarity=0.459 Sum_probs=323.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+...+..+...+..+.......+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 344 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~ 423 (708)
T TIGR01193 344 IETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSY 423 (708)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999888888777766655555555555556667788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||+|++||
T Consensus 424 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~ 501 (708)
T TIGR01193 424 FLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNS 501 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCC
Confidence 999999999999999999999999999998876543211101112233469999999999743 479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
.+||+||||||||||+|+|+|+++|++|+|++||.++.+++..++|++||||||++.+|++|++|||.++..++.+++++
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i 581 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984346778899
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++.+|.|++|.+++ .+||||||||++||||++++|++||||||||+||+.+++.+.+.|+++
T Consensus 582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---- 657 (708)
T TIGR01193 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---- 657 (708)
T ss_pred HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh----
Confidence 99999999999999999999999874 689999999999999999999999999999999999999999999875
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
+++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|+++++
T Consensus 658 -~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 658 -QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred -cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 36899999999999999999999999999999999999999999998874
No 9
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.7e-71 Score=578.48 Aligned_cols=365 Identities=35% Similarity=0.542 Sum_probs=326.9
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.++.+.++|++..++..+...+..+..........++..+..++++++|++.+..|.+|+|+++++..+...
T Consensus 214 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~ 293 (582)
T PRK11176 214 HKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIA 293 (582)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999988887777666655555666666677778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++.... ....++..+.|+++||+|+|+++ ++++|+|+||+|++||
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~ 370 (582)
T PRK11176 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGK 370 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCC
Confidence 99999999999999999999999999999876543211 11112223469999999999754 3579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+++|+|+++|++|+|++||+++.+++..++|++|+||||++.+|++|++|||.++.+...+++++
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 450 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985444678999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+++++.++++++++++|.|++|.+++ .+||||||||++|||||+++|++||||||||+||++++..+.+.|.++.
T Consensus 451 ~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--- 527 (582)
T PRK11176 451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--- 527 (582)
T ss_pred HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999985 5799999999999999999999999999999999999999999999874
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|++++..|.
T Consensus 528 -~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 528 -KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred -CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999998764
No 10
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-71 Score=591.78 Aligned_cols=360 Identities=31% Similarity=0.492 Sum_probs=323.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||++|.|+.+.++|.+...+..+...+..+.......+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 342 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~ 421 (710)
T TIGR03796 342 IETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSS 421 (710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998888888777776666666666666667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc----c-cccc-ccccccEEEEEEEEEcCCCCCCCceeeeeE
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS----E-GVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCL 155 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~----~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~vL~~isl 155 (377)
+..|+..+...+..++.+..+.+|+.++++.+++..... . .... +...+.|+++||+|+|++. ++++|+|+||
T Consensus 422 ~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl 500 (710)
T TIGR03796 422 FLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSL 500 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeE
Confidence 999999999999999999999999999998876543211 0 0111 1223469999999999854 3579999999
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 235 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 235 (377)
+|++||++||+||||||||||+|+|+|+++|++|+|.+||.|+.+++..++|++||||||++.+|++|++|||.++. ++
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~ 579 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PT 579 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999874 35
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 017091 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313 (377)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~ 313 (377)
.+++++.++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|++||||||||+||+.+++++.+.|+
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~ 659 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 77899999999999999999999999999874 6899999999999999999999999999999999999999999987
Q ss_pred HhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 314 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 314 ~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+ .++|+|+|||+++.+..||+|++|++|++++.|+|++++++++.|++++
T Consensus 660 ~------~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 660 R------RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred h------cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 5 2689999999999999999999999999999999999999999999876
No 11
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.7e-71 Score=587.87 Aligned_cols=359 Identities=42% Similarity=0.692 Sum_probs=317.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.++|.+..++..+...+.....+........+..+..++++++|++++..|.+|+|.+++++.|...
T Consensus 350 ~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~ 429 (711)
T TIGR00958 350 MRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQ 429 (711)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999998888776665555544444445555667778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..++..+..++++..+.+|++++++.+++...... ..+.+..+.|+++||+|+|++++++++|+|+||+|+|||
T Consensus 430 l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge 508 (711)
T TIGR00958 430 LGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT-LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE 508 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCC
Confidence 9999999999999999999999999999988765332111 111122346999999999986434579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+++|+|+++|++|+|.+||+++.+++..++|++|+||||+|.+|++|++|||.++.+ +.+++++
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i 587 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEI 587 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854 5678899
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.+++ .+||||||||++||||++++|+|+|||||||+||+++++.+.+ ...
T Consensus 588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~----- 661 (711)
T TIGR00958 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS----- 661 (711)
T ss_pred HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc-----
Confidence 99999999999999999999999985 5899999999999999999999999999999999999999888 221
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
.+++|+|+|||+++.++.||+|++|++|+|++.|+|++++++++.|+++
T Consensus 662 ~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 662 RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 2478999999999999999999999999999999999999998888875
No 12
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.2e-70 Score=582.45 Aligned_cols=354 Identities=34% Similarity=0.509 Sum_probs=318.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.++|++...+..+...+..+.......+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 334 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~ 413 (694)
T TIGR03375 334 LETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGR 413 (694)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999888887777766666666666666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++..........+...+.|+++||+|+|++. .+++|+|+||+|++||
T Consensus 414 ~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~ 492 (694)
T TIGR03375 414 ALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGE 492 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCC
Confidence 999999999999999999999999999999876533211111111223469999999999753 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|++|+||||++.+|++|++|||.++.+ +.+++++
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~-~~~~~~i 571 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEI 571 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853 5788999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|+++|||||||+||+++++.+.+.|.++.
T Consensus 572 ~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--- 648 (694)
T TIGR03375 572 LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--- 648 (694)
T ss_pred HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999974 5899999999999999999999999999999999999999999999874
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+++|+|+|||+++.++.||+|++|++|++++.|+|+++++.
T Consensus 649 -~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 649 -AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred -CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 47899999999999999999999999999999999999764
No 13
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.5e-71 Score=616.94 Aligned_cols=368 Identities=34% Similarity=0.512 Sum_probs=324.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+++.++|.+..+...+...+.....+.+.++...+..+..++++|+|++++..|.+|+|++++++.+...
T Consensus 1032 i~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~ 1111 (1466)
T PTZ00265 1032 MNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLF 1111 (1466)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988888777777666777677777667778889999999999999999999988876655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-cccccc---cccccccEEEEEEEEEcCCCCCCCceeeeeEEE
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF-LSEGVK---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 157 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i 157 (377)
...++..+...+..++.+..+++|++++++.+++... +..+.. .+...+.|+++||+|+|+++++.++|+|+||+|
T Consensus 1112 ~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i 1191 (1466)
T PTZ00265 1112 TGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSC 1191 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEE
Confidence 5566778888899999999999999999998664211 111111 112234699999999998644457999999999
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC---------------------------------------------------
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--------------------------------------------------- 186 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--------------------------------------------------- 186 (377)
++|+++|||||||||||||+++|+|+|+|
T Consensus 1192 ~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 (1466)
T PTZ00265 1192 DSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDST 1271 (1466)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999998
Q ss_pred ---CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc
Q 017091 187 ---SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263 (377)
Q Consensus 187 ---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 263 (377)
++|+|++||+|+.+++..++|++||||+|+|.||++||+|||.+|.+ +.++++++++++.+++++++..+|.||+|
T Consensus 1272 ~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT 1350 (1466)
T PTZ00265 1272 VFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDT 1350 (1466)
T ss_pred cCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCC
Confidence 69999999999999999999999999999999999999999999954 67899999999999999999999999999
Q ss_pred ccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 264 LVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 264 ~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
.+++ .+||||||||++|||||+++|+|||||||||+||+++++.|++.|.++.. .+++|+|+|||+++.++.||+|
T Consensus 1351 ~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~--~~~~TvIiIaHRlsti~~aD~I 1428 (1466)
T PTZ00265 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD--KADKTIITIAHRIASIKRSDKI 1428 (1466)
T ss_pred ccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc--cCCCEEEEEechHHHHHhCCEE
Confidence 9985 58999999999999999999999999999999999999999999998742 1478999999999999999999
Q ss_pred EEEeC----CEEE-EEcChHHHhh-cCHHHHHHHHHH
Q 017091 342 VVIDD----GRII-EVGNHAELLH-KGRLYAKLVKRQ 372 (377)
Q Consensus 342 ~~l~~----G~i~-~~g~~~~l~~-~~~~~~~~~~~~ 372 (377)
++|++ |+++ +.|+|+||++ +++.|++++..|
T Consensus 1429 vvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1429 VVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 99999 9955 8999999998 589999998765
No 14
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-70 Score=538.92 Aligned_cols=362 Identities=35% Similarity=0.533 Sum_probs=322.2
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL 82 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~ 82 (377)
++||.||.|+++..+|.....+..+...+.....++++.....++....+.+.++|..-+.++.+|+|+++.+..+..++
T Consensus 225 e~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL 304 (591)
T KOG0057|consen 225 EIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQL 304 (591)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHH
Confidence 78999999999999999999999988887777777776666666666666677778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcE
Q 017091 83 IYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEV 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~ 162 (377)
..|+..++..+..+.++...+..++...+....... ...+.....+.|+++||+|+|+.+ +++|+++||+|++||.
T Consensus 305 ~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~~~~i~~~~~~I~F~dV~f~y~~k--~~iL~gvsf~I~kGek 380 (591)
T KOG0057|consen 305 SLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--AALPIELFGGSIEFDDVHFSYGPK--RKVLKGVSFTIPKGEK 380 (591)
T ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--ccCCcccCCCcEEEEeeEEEeCCC--CceecceeEEecCCCE
Confidence 999999999999999999888877765443222111 001112234569999999999854 4699999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHH
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE 242 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~ 242 (377)
+||+|+|||||||++|+|.++++ ++|+|++||++++.++.+.+|+-|||||||..||+.||.+||.||++ +.+++++.
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~-sas~eeV~ 458 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP-SASDEEVV 458 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC-CcCHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999964 78899999
Q ss_pred HHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCC
Q 017091 243 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320 (377)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~ 320 (377)
++++++++++.+.++|.||+|.+|+ ..|||||||||+||||++++|+|+++|||||+||.++++.+.+.+.+. .
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~----~ 534 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV----M 534 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh----c
Confidence 9999999999999999999999985 579999999999999999999999999999999999999999999885 3
Q ss_pred CCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 321 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 321 ~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
.++|+|+|.||+++++.||+|+++++|++.+.|+|+|++...+.|+++|..|..
T Consensus 535 ~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 535 SGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQTS 588 (591)
T ss_pred CCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccccc
Confidence 589999999999999999999999999999999999999988899999987654
No 15
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-70 Score=542.69 Aligned_cols=365 Identities=32% Similarity=0.470 Sum_probs=320.5
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-g~lt~g~l~~~~~~~~ 80 (377)
+.|+|+||+.+...++..+.++++++..++.-+..-.......++..+..+++.++.++.... |.+|....+.++.+.-
T Consensus 189 L~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAP 268 (559)
T COG4988 189 LETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAP 268 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhH
Confidence 479999999999999999999999999988765443334455666666655555555555556 8999988877788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccc-ccccccEEEEEEEEEcCCCCCCCceeeeeEEEeC
Q 017091 81 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEA 159 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~ 159 (377)
-++.|++.++..++.-+.+..+.+.++.+++.|++.......... ......++++|++|.|+++ +++++|+||++++
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~ 346 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKA 346 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecC
Confidence 888999999999999999999999999999987764322111111 1122246667999999875 3799999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 239 (377)
|+.+||||+||||||||+++|+|+++|++|+|.+||+++.+++...+|++++||+|+|++|++|++|||.++.+ +.+++
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~-~~s~e 425 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP-DASDE 425 (559)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC-cCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999854 67899
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
++.++++.+++.++++. |.|+++.+++ ..|||||+|||++||||+++++++|+|||||+||.++++.+.+.|.++.
T Consensus 426 ~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~- 503 (559)
T COG4988 426 EIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA- 503 (559)
T ss_pred HHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH-
Confidence 99999999999999999 9999999984 6899999999999999999999999999999999999999999999996
Q ss_pred cCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 318 DCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 318 ~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+++|+|+||||+..+..||+|++|++|++++.|+|+++.++++.|++++..|.+
T Consensus 504 ---~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 504 ---KQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred ---hCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999999999999988764
No 16
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.1e-70 Score=576.04 Aligned_cols=365 Identities=36% Similarity=0.527 Sum_probs=329.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+...+..+...+..+...........+..+..++++++|++++..|.+|+|.++++.++...
T Consensus 327 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~ 406 (694)
T TIGR01846 327 IETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGR 406 (694)
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999888887777766666666666667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+++|+.++++.+++.... .....+...+.|+++||+|+|++. ++++|+|+||+|++||
T Consensus 407 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~ 484 (694)
T TIGR01846 407 VTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGE 484 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCC
Confidence 99999999999999999999999999999887654321 111112223469999999999753 2469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+|+||||||||+|+|+|+++|++|+|++||+++++++..++|++|+||||++.+|++|++|||.++.+ +.+++++
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-~~~~~~i 563 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHV 563 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999743 5678899
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.+++ .+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++.
T Consensus 564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--- 640 (694)
T TIGR01846 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--- 640 (694)
T ss_pred HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999874 6899999999999999999999999999999999999999999999873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|++++..|.
T Consensus 641 -~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 641 -RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQS 693 (694)
T ss_pred -CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhhc
Confidence 47899999999999988999999999999999999999999999999998764
No 17
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-72 Score=539.78 Aligned_cols=366 Identities=35% Similarity=0.515 Sum_probs=333.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
++|||-||+|.++.++|.++..++.+...+......+++...+.+..+..+....+++|.|..+.+|+|+++.|..|..+
T Consensus 408 FETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliq 487 (790)
T KOG0056|consen 408 FETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQ 487 (790)
T ss_pred chhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHH
Confidence 58999999999999999999999988877776666666666677766666667777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..++..+..++......+++++++++++|..+.+...+.....+.|+++||+|.|.. ++++|+||||++.||+
T Consensus 488 Ly~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGk 565 (790)
T KOG0056|consen 488 LYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGK 565 (790)
T ss_pred HhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCc
Confidence 99999999999999999999999999999988875443322233334568999999999975 3689999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
.+|+|||||+||||++|+|.++++.++|.|.+||+|++......+|++||.||||..||+.||..||.|+. +..++|++
T Consensus 566 tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak-~~Asneev 644 (790)
T KOG0056|consen 566 TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK-PSASNEEV 644 (790)
T ss_pred EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC-CCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 47889999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~~--~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++++.+-.+|+||+|.+|+. .|||||||||||||+++++|.+++|||+||+||..+++.|+..|.++.
T Consensus 645 yaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc--- 721 (790)
T KOG0056|consen 645 YAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC--- 721 (790)
T ss_pred HHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh---
Confidence 999999999999999999999999964 699999999999999999999999999999999999999999999985
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQTE 374 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 374 (377)
.++|.|+|+|+++++-+||.|+++++|+|+|.|.|+|++.+ +|.|++||+.|+.
T Consensus 722 -a~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 722 -ANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred -cCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 57899999999999999999999999999999999999987 8899999976643
No 18
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.8e-70 Score=563.67 Aligned_cols=361 Identities=28% Similarity=0.474 Sum_probs=318.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|++..+++.+...+..+..+.......++..+..++++++|++++ .|.+++|.++++..|...
T Consensus 210 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~ 288 (574)
T PRK11160 210 QAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAAL 288 (574)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHH
Confidence 5799999999999999999999998888887776666666666666666777888999885 789999999998877544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 -LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|+..+...+..++++..+++|+.++++.+++...+.... .....+.|+++||+|+|+++ ++++|+|+||++++|
T Consensus 289 ~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G 366 (574)
T PRK11160 289 AAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTST-AAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAG 366 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccC-CCCCCCeEEEEEEEEECCCC-CCcceecceEEECCC
Confidence 446778888888999999999999999999876532211111 11123469999999999753 246999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++||+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++|+||||++++|++|++|||.++.+ +.++++
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~ 445 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEA 445 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999854 567889
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.+++++++++ |.|++|.+++ .+||||||||++||||++++|++||||||||+||+++++.+.+.|.++.
T Consensus 446 i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-- 522 (574)
T PRK11160 446 LIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-- 522 (574)
T ss_pred HHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--
Confidence 9999999999999999 9999999975 5899999999999999999999999999999999999999999999873
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
+++|+|+|||+++.+..||+|++|++|++++.|+|++++++++.|+++++.
T Consensus 523 --~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 523 --QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred --CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence 478999999999999899999999999999999999999999999999864
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.5e-69 Score=562.04 Aligned_cols=360 Identities=30% Similarity=0.414 Sum_probs=312.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW-NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~ 80 (377)
+++||+||.++.+.++|.+..++..+...+..+..+.. .....++..+..+++++++++ +..|.+++|.+++++.|..
T Consensus 214 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~ 292 (592)
T PRK10790 214 MSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLG 292 (592)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHH
Confidence 57899999999999999998888777766555444332 222333333333333344444 6789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 81 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
.+..|+..+...+..+.++..+++|+.++++.++++... . ..+...+.|+++||+|+|+++ +++|+|+||++++|
T Consensus 293 ~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~--~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~G 367 (592)
T PRK10790 293 RLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-D--DRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSR 367 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-C--ccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCC
Confidence 999999999999999999999999999999876542211 1 111122469999999999743 46999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++||+|+||||||||+|+|+|+++|++|+|.+||.++.+++.+.+|++|+||||+|.+|++|++|||.++. +.++++
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~ 445 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQ 445 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999984 467889
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.++++++++++|.|++|.++. .+||||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.
T Consensus 446 i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-- 523 (592)
T PRK10790 446 VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-- 523 (592)
T ss_pred HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999874 5899999999999999999999999999999999999999999999874
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.+..||+|++|++|++++.|+|++++++++.|++++..|.
T Consensus 524 --~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~ 576 (592)
T PRK10790 524 --EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQL 576 (592)
T ss_pred --CCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999998664
No 20
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.4e-69 Score=560.10 Aligned_cols=364 Identities=35% Similarity=0.530 Sum_probs=322.5
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||.||.++.+.++|.+..++..+...+..+...........+..+..++++++|++++.+|.+|+|.+++++.+...
T Consensus 205 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~ 284 (588)
T PRK13657 205 VSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATL 284 (588)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 47899999999999999999999888877666665555555555556677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+++|+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||+++|||
T Consensus 285 ~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~ 362 (588)
T PRK13657 285 LIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQ 362 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCC
Confidence 999999999999999999999999999988755422111111111122369999999999753 369999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+|+||||||||+|+|+|+++|++|+|.+||.++.+++...+|++|+||||+|.+|++|++|||.++. ++.+++++
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i 441 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEM 441 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 35678899
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+.+++.+++++++.++|.|++|.+++ .+||||||||++|||||+++|+++|||||||+||+.+++.+.+.|.++.
T Consensus 442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--- 518 (588)
T PRK13657 442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--- 518 (588)
T ss_pred HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999998874 5799999999999999999999999999999999999999999998873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
+++|+|+||||++.++.||+|++|++|++++.|++++++..++.|++++..+
T Consensus 519 -~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 519 -KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ 570 (588)
T ss_pred -cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHh
Confidence 4789999999999999999999999999999999999998888999988754
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.3e-69 Score=559.17 Aligned_cols=364 Identities=38% Similarity=0.599 Sum_probs=327.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||.+|.++.+.++|.+..++..+...+..+..+....+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 203 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~ 282 (571)
T TIGR02203 203 YRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIA 282 (571)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 57899999999999999999999888887777766666666666667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+.++..+.+|+.++++.+++..... ....+..+.|+++||+|+|++. ++++|+|+||++++||
T Consensus 283 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~ 359 (571)
T TIGR02203 283 LIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGE 359 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCC
Confidence 999999999999999999999999999998766532211 1111123469999999999754 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+|+||||||||+++|+|+++|++|+|.+||.++++++..++|++|+|+||+|.+|++|++|||.++.+.+.+++++
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 439 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985436788999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++++++.++|.|++|.+++ .+||||||||++||||++++|+++|||||||+||+.+++.+.+.|.++.
T Consensus 440 ~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--- 516 (571)
T TIGR02203 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--- 516 (571)
T ss_pred HHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999974 5799999999999999999999999999999999999999999998874
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..+
T Consensus 517 -~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 517 -QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred -CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 4789999999999998999999999999999999999998888899988765
No 22
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.4e-68 Score=554.57 Aligned_cols=364 Identities=30% Similarity=0.480 Sum_probs=323.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+..+........+..+..++++++|++++..|.+|+|.++++..|...
T Consensus 186 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~ 265 (569)
T PRK10789 186 IRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGL 265 (569)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 68999999999999999999988888877766665555555555555666778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+.+|+.++++.+++.... ....+...+.|+++|++|+|+.. ++++|+|+||++++|+
T Consensus 266 ~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~ 342 (569)
T PRK10789 266 MIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQ 342 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCC
Confidence 99999999999999999999999999999876543211 11111223469999999999753 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+|++++|+||+|.+|++|++|||.++.+ +.+++++
T Consensus 343 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~ 421 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP-DATQQEI 421 (569)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999998899999999999999999999999999843 5678889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+.+++.+++++++.++|.|++|.++. .+||||||||++||||++++|+++|||||||+||+.+++.+.+.|+++.
T Consensus 422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--- 498 (569)
T PRK10789 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--- 498 (569)
T ss_pred HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999874 5799999999999999999999999999999999999999999998873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.++.||+|++|++|++++.|++++++++++.|++++..|.
T Consensus 499 -~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 499 -EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred -CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 47899999999999989999999999999999999999999999999998653
No 23
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=9.1e-68 Score=549.90 Aligned_cols=365 Identities=34% Similarity=0.508 Sum_probs=321.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.++.+.+++++..++..+...+..+..+........+..+..++++++|++++..|.+|+|.++++..|...
T Consensus 205 i~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~ 284 (585)
T TIGR01192 205 VSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANL 284 (585)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999988877776666555555555555556667788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+++|+.++++.+++..........+...+.++++||+|+|+++ +++|+|+||++++||
T Consensus 285 l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~ 362 (585)
T TIGR01192 285 LIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQ 362 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCC
Confidence 999999999999999999999999999998765432111111111123469999999999753 368999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++|+||++.+|++|++||+.++.+ +.+++++
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~ 441 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEV 441 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999988899999999999999999999999999743 5678888
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+++++.+++++++.++|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.|.++.
T Consensus 442 ~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--- 518 (585)
T TIGR01192 442 YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--- 518 (585)
T ss_pred HHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh---
Confidence 89999999999999999999998874 5899999999999999999999999999999999999999999998873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..+.
T Consensus 519 -~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 519 -KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred -CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhCc
Confidence 47899999999999988999999999999999999999999999999997653
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=9.3e-68 Score=549.73 Aligned_cols=366 Identities=41% Similarity=0.649 Sum_probs=320.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.++.+.++|.+..++..+...+..+...........+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 207 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~ 286 (576)
T TIGR02204 207 IRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVM 286 (576)
T ss_pred cHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998888777766655554444444444444556677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|+..+...+..+..+..+.+|+.++++.+++..........+ +..+.|+++||+|+|++..++++|+|+||+++||
T Consensus 287 ~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G 366 (576)
T TIGR02204 287 VAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPG 366 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCC
Confidence 999999999999999999999999999998765422111111111 1234699999999998532257999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|+++|+||||||||||+|+|+|+++|++|+|.+||.++++++...+|++|+|+||+|++|++|++|||.++.+ +.++++
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~ 445 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEE 445 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999853 456888
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
++++++.+++.++++++|.|++|.+++ .+||||||||++||||++++|+++|||||||+||+.+++.+.+.++++.
T Consensus 446 ~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-- 523 (576)
T TIGR02204 446 VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-- 523 (576)
T ss_pred HHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--
Confidence 999999999999999999999998874 5799999999999999999999999999999999999999999999874
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..|
T Consensus 524 --~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 524 --KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred --CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 4789999999999998999999999999999999999999999999988765
No 25
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-68 Score=518.48 Aligned_cols=361 Identities=28% Similarity=0.416 Sum_probs=308.7
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL 82 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~ 82 (377)
.+++.||+++.+.+.+......+.+.+.+..+...+.......+..+..+.++++.+..+-.|..+.-..+++++.+...
T Consensus 209 ~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~ 288 (573)
T COG4987 209 AELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAA 288 (573)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999888888877777666666555555544444233333444556767654444445544555
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 83 IYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+.++..+. ..+.++.+...++.|+.++.+.+++...+.+.. +.....++++||+|+|++. ..++|+|+||++++||
T Consensus 289 ~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~--~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GE 365 (573)
T COG4987 289 LEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQT--ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGE 365 (573)
T ss_pred HHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcccc--CCccceeeeccceeecCCC-ccchhhccceeecCCC
Confidence 66666666 666788999999999999999988765441111 1111269999999999975 4579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
.+||+|+||||||||+++|.|.++|++|+|.++|.++..++.+.+|+.|++++|.+++|++|++||+.++. ++.++|++
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~-~~AsDEel 444 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN-PDASDEEL 444 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcC-CCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 47899999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
++++++++++++++..|.|++|++++ ..||||||||++|||+|++|.+++||||||.|||+.+++++++.+.+..
T Consensus 445 ~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--- 521 (573)
T COG4987 445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--- 521 (573)
T ss_pred HHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh---
Confidence 99999999999999999999999984 5899999999999999999999999999999999999999999998764
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
+|+|+|+|||++..++.||||++|++|+++++|+|++++.+++.|+++++.
T Consensus 522 -~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q~ 572 (573)
T COG4987 522 -EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572 (573)
T ss_pred -cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhcc
Confidence 589999999999999999999999999999999999999999999998763
No 26
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1e-66 Score=538.25 Aligned_cols=351 Identities=30% Similarity=0.435 Sum_probs=311.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|++..++..+...+..+..+........+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 190 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~ 269 (544)
T TIGR01842 190 AEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGR 269 (544)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999998888777666665555555555555666778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++.... ...+...+.++++||+|+|+++ ++++|+|+||++++||
T Consensus 270 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~ 345 (544)
T TIGR01842 270 ALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGE 345 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCC
Confidence 99999999999999999999999999999876553211 1111223469999999999753 2479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+++|+|+++|++|+|.+||.++..++...+|+.++|+||+|.+|++|++||+.++. ++.+++++
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~ 424 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG-ENADPEKI 424 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC-CCCCHHHH
Confidence 99999999999999999999999999999999999999998888999999999999999999999998763 34678889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.+++ .+||||||||++||||++++|++||||||||+||+.+++.+.+.|.++..
T Consensus 425 ~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-- 502 (544)
T TIGR01842 425 IEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-- 502 (544)
T ss_pred HHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh--
Confidence 99999999999999999999998874 68999999999999999999999999999999999999999999988742
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 503 -~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 503 -RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred -CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 4789999999999888899999999999999999998864
No 27
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.3e-66 Score=535.94 Aligned_cols=323 Identities=29% Similarity=0.394 Sum_probs=286.8
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|++..++..+...+..+..+........+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 203 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~ 282 (529)
T TIGR02868 203 AADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLA 282 (529)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Confidence 58999999999999999999999888887777766666655566666677778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc--ccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE--GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEA 159 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~ 159 (377)
+..|+..+...+..++.+..+.+|+.++++.+++...... ....++..+.|+++||+|+|+++ +++|+|+||++++
T Consensus 283 ~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~ 360 (529)
T TIGR02868 283 AFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPP 360 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcC
Confidence 9999999999999999999999999999987765321111 11111123469999999999753 3699999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 239 (377)
||++||+||||||||||+|+|+|+++|++|+|.+||+|+.++ ..++|++|+||||+|++|++|++|||.++. ++.+++
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e 438 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDE 438 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHH
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999985 467889
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
+++++++.+++++++.++|+|++|.+++ .+||||||||++||||++++|+|||||||||+||+++++.+.+.+.++.
T Consensus 439 ~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~- 517 (529)
T TIGR02868 439 ELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL- 517 (529)
T ss_pred HHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999984 5799999999999999999999999999999999999999999998773
Q ss_pred cCCCCeEEEEEecCc
Q 017091 318 DCKTKRTVIVIAHRL 332 (377)
Q Consensus 318 ~~~~g~tvi~itH~l 332 (377)
+++|+|+|||++
T Consensus 518 ---~~~TvIiItHrl 529 (529)
T TIGR02868 518 ---SGKTVVVITHHL 529 (529)
T ss_pred ---CCCEEEEEecCC
Confidence 578999999985
No 28
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-67 Score=503.36 Aligned_cols=362 Identities=39% Similarity=0.574 Sum_probs=331.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
.++||.||.|+++..+|....+.+.+...+......+++.....++.....++.+.++..+..|++|+|+++....+..+
T Consensus 132 fEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~q 211 (497)
T COG5265 132 FETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQ 211 (497)
T ss_pred hhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhh
Confidence 47999999999999999999999988888777666777666667777777788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|..-++..+.++.+++...++++++++.+.+..+.+...+.+ -..+.+.++||+|.|... +++|+++||++++|
T Consensus 212 ls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g 289 (497)
T COG5265 212 LSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLG 289 (497)
T ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCc
Confidence 999999999999999999999999999999887654433323333 233569999999999753 68999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
+.+|++||||+||||++++|.++|++++|.|.+||+|++......+|+.||.||||..||+.|+..|+.||. +..++++
T Consensus 290 ~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr-~~at~ee 368 (497)
T COG5265 290 KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR-PDATAEE 368 (497)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccC-ccccHHH
Confidence 999999999999999999999999999999999999999998899999999999999999999999999995 4788999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+..+++.+.+.+++..+|.||+|.+++. .|||||||||+|||+++++|+||+|||+||+||..+++.++..|+++.
T Consensus 369 v~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-- 446 (497)
T COG5265 369 VGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-- 446 (497)
T ss_pred HHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--
Confidence 9999999999999999999999999963 699999999999999999999999999999999999999999999985
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
.|+|.++|.|+++++..||.|+||++|+|+|.|+|++++..++.|++||.
T Consensus 447 --~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 447 --AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred --CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 58999999999999999999999999999999999999999999999985
No 29
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.9e-65 Score=576.10 Aligned_cols=360 Identities=25% Similarity=0.381 Sum_probs=307.2
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM-IGQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~lt~g~l~~~~~~~~ 80 (377)
+++||+||.++++.+++.+..+...+..........++......+ ..+++++++++.+. .|.+++|.+.+++.|..
T Consensus 1154 i~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~ 1230 (1522)
T TIGR00957 1154 VSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAALFAVISRHSLSAGLVGLSVSYSL 1230 (1522)
T ss_pred cHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 579999999999888888777766555433332222332222222 22334445555554 57899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-cc--cccccccEEEEEEEEEcCCCCCCCceeeeeEEE
Q 017091 81 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-VK--LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 157 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~-~~--~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i 157 (377)
.+..|+..+...+..+..+..+++|+.++++.+++......+ .. .++..+.|+++||+|+|+.+ ..++|+|+||+|
T Consensus 1231 ~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I 1309 (1522)
T TIGR00957 1231 QVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTI 1309 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEE
Confidence 999999999999999999999999999999887664311111 11 11234579999999999754 246999999999
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 237 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 237 (377)
++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++..++|++|++|||+|.+|++||+|||... ...+
T Consensus 1310 ~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~s 1387 (1522)
T TIGR00957 1310 HGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYS 1387 (1522)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999832 1467
Q ss_pred HHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHh
Q 017091 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315 (377)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l 315 (377)
+++++++++.+++++++.++|.|++|.+++ .+||||||||+||||||+++|+|||||||||+||+++++.+++.|++.
T Consensus 1388 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1388 DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999975 689999999999999999999999999999999999999999999876
Q ss_pred hccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 316 RNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 316 ~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
. +++|+|+|+|+++++..||||+||++|+|+|.|+|++++++++.|++++++
T Consensus 1468 ~----~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1468 F----EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred c----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 3 478999999999999999999999999999999999999988999999876
No 30
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.8e-65 Score=523.73 Aligned_cols=335 Identities=31% Similarity=0.465 Sum_probs=291.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.++|++..++..+...+..+...........+..+..+++++++++.+..|.+|+|.++++.+|...
T Consensus 193 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~ 272 (529)
T TIGR02857 193 LPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPE 272 (529)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988888776665555444444444444555555566777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+++|+.++++.+++.... .... ....+.|+++||+|+|+++ .+++|+|+||+|++||
T Consensus 273 ~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~ 349 (529)
T TIGR02857 273 FYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-APVT-AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGE 349 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cCCC-CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCC
Confidence 99999999999999999999999999999865432211 1111 1112369999999999864 2479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|++|+||+|+|.+|++|++||+.++.+ +.+++++
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i 428 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEI 428 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999753 5678889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.+++ .+||||||||++||||++++|+++|||||||+||+++++.+.+.+.++.
T Consensus 429 ~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--- 505 (529)
T TIGR02857 429 RRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--- 505 (529)
T ss_pred HHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc---
Confidence 99999999999999999999999874 5899999999999999999999999999999999999999999999873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEE
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
+++|+|+|||+++.++.||+|++|
T Consensus 506 -~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 506 -QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred -CCCEEEEEecCHHHHHhCCEEEeC
Confidence 478999999999999899999985
No 31
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.9e-64 Score=564.97 Aligned_cols=368 Identities=34% Similarity=0.561 Sum_probs=316.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcCHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIG--------QVSPEQLT 73 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g--------~lt~g~l~ 73 (377)
+++||+|+.|+.+.++|.+......+...+.....++..+...++..+..++++|+|++++..| .+++|.++
T Consensus 246 i~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~ 325 (1466)
T PTZ00265 246 IRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVI 325 (1466)
T ss_pred hHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHH
Confidence 6899999999999999999988888887777777666666666666677788999999999885 58899988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeee
Q 017091 74 KYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 153 (377)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~i 153 (377)
+++.+.......+..+...+..++.+..+++|++++++.+++......+...+. ...|+++||+|+|+++++.++|+|+
T Consensus 326 ~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~i 404 (1466)
T PTZ00265 326 SILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDL 404 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccc
Confidence 877666555555667777888999999999999999998775322111111121 2369999999999864334799999
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE-CCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 232 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 232 (377)
||+|++||++||+||||||||||+++|+|+++|++|+|++ ||.++..++..++|++||||+|+|.+|+.||+|||.++.
T Consensus 405 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~ 484 (1466)
T PTZ00265 405 NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSL 484 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcC
Confidence 9999999999999999999999999999999999999999 579998888888999999999999999999999999863
Q ss_pred CC--------------------------------------------------------CCCHHHHHHHHHHcCHHHHHHh
Q 017091 233 PK--------------------------------------------------------DVKNEDIEWAAKQAYVHEFILS 256 (377)
Q Consensus 233 ~~--------------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~ 256 (377)
.. ..+++++.++++.+++++++..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~ 564 (1466)
T PTZ00265 485 YSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSA 564 (1466)
T ss_pred CCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHh
Confidence 10 2345678889999999999999
Q ss_pred CCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 257 LPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 257 ~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
+|.|++|.++. .+|||||||||+|||||+++|+|||||||||+||+.++..+.+.|+++.+. +|+|+|+|||+++.
T Consensus 565 lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~--~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 565 LPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN--ENRITIIIAHRLST 642 (1466)
T ss_pred CccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhc--CCCEEEEEeCCHHH
Confidence 99999999874 689999999999999999999999999999999999999999999998532 47899999999999
Q ss_pred HHhcCeEEEEeCC-----------------------------------------------EEEEEcChHHHhh-cCHHHH
Q 017091 335 IKAVDRIVVIDDG-----------------------------------------------RIIEVGNHAELLH-KGRLYA 366 (377)
Q Consensus 335 ~~~~d~v~~l~~G-----------------------------------------------~i~~~g~~~~l~~-~~~~~~ 366 (377)
++.||+|++|++| +|+|+|+|+++++ .++.|+
T Consensus 643 i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~ 722 (1466)
T PTZ00265 643 IRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYY 722 (1466)
T ss_pred HHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHH
Confidence 9889999999986 5999999999998 689999
Q ss_pred HHHHHH
Q 017091 367 KLVKRQ 372 (377)
Q Consensus 367 ~~~~~~ 372 (377)
.++..|
T Consensus 723 ~l~~~q 728 (1466)
T PTZ00265 723 TMINNQ 728 (1466)
T ss_pred HHHhhh
Confidence 998765
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.3e-64 Score=565.08 Aligned_cols=365 Identities=22% Similarity=0.313 Sum_probs=305.8
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcCHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI--MIGQVSPEQLTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--~~g~lt~g~l~~~~~~~ 79 (377)
+++||+||.++++.+++.+..+...+..........++.....++..+..+++++++++.+ ..+.+++|.+.+++.|.
T Consensus 1147 ~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a 1226 (1560)
T PTZ00243 1147 SATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMA 1226 (1560)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 5799999999999999988888777665544333333333334444343334444444433 34557899888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc--------------------------c-ccc---cccccc
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL--------------------------S-EGV---KLQRLM 129 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~--------------------------~-~~~---~~~~~~ 129 (377)
..+..|+..+...+..+..++.+++|+.++++.++++..+ . ... +.++..
T Consensus 1227 ~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (1560)
T PTZ00243 1227 MQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQA 1306 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCC
Confidence 9999999999999999999999999999999754321100 0 000 001123
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.|+++||+|+|+++ .+++|+||||+|++||++||||+||||||||+++|+|+++|++|+|++||+|+.+++.+++|++
T Consensus 1307 G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred CeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 469999999999754 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~ 287 (377)
|+||||+|.||++||+|||... ...++++++++++.+++++++..+|.|++|.+++ .+||||||||++|||||+++
T Consensus 1386 I~iVpQdp~LF~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1386 FSMIPQDPVLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred ceEECCCCccccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999864 2567899999999999999999999999999974 68999999999999999995
Q ss_pred -CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHH
Q 017091 288 -PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLY 365 (377)
Q Consensus 288 -p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~ 365 (377)
|+|||||||||+||+++++.+++.|++.. +++|+|+|+|+++++..||+|++|++|+|++.|+|++++++ ++.|
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~----~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f 1539 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF----SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIF 1539 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC----CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHH
Confidence 89999999999999999999999998863 47899999999999999999999999999999999999975 7889
Q ss_pred HHHHHHHh
Q 017091 366 AKLVKRQT 373 (377)
Q Consensus 366 ~~~~~~~~ 373 (377)
+++++.+.
T Consensus 1540 ~~l~~~~~ 1547 (1560)
T PTZ00243 1540 HSMVEALG 1547 (1560)
T ss_pred HHHHHHhC
Confidence 99987643
No 33
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.6e-64 Score=491.43 Aligned_cols=352 Identities=30% Similarity=0.446 Sum_probs=320.2
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
.++|++.|......++|.+.+..+...+.+..-..+.+...+-.+-.+.+..++.+|+|+|+.|++|+|.+++-..+.+.
T Consensus 208 AEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gR 287 (580)
T COG4618 208 AEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGR 287 (580)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhh
Confidence 37899999999999999999888887776666566666666677778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
...|+-..+..|..+..++.+++|+.+++...|.... ..+.|.+.+.+.++++++.=|+. .+++|+++||++.+||
T Consensus 288 aLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~ 363 (580)
T COG4618 288 ALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGE 363 (580)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCc
Confidence 9999999999999999999999999999988776432 23345566789999999977765 4789999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
.+|||||||||||||.|+|.|..+|.+|.|++||-++.+++.+++-++|||+||+..||++||.|||+-. ..+.+.+.+
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf-~~~~d~~kI 442 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARF-GEEADPEKV 442 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhc-cccCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999743 235678889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++.+|.+-++|+||+|.+++ ..||||||||++|||||+.+|.+++||||-|+||...+..+.+.|.++++
T Consensus 443 ieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-- 520 (580)
T COG4618 443 IEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-- 520 (580)
T ss_pred HHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH--
Confidence 99999999999999999999999985 58999999999999999999999999999999999999999999999975
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+|.|+|+|||+++.+..+|+|++|++|++...|+.+|++.+
T Consensus 521 -rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 521 -RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred -cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 58999999999999999999999999999999999998764
No 34
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-63 Score=561.74 Aligned_cols=362 Identities=24% Similarity=0.365 Sum_probs=291.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc----C-HHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQV----S-PEQLTKY 75 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-g~l----t-~g~l~~~ 75 (377)
+++||+||.++++.+++.+..+...+....... ...+.... +..+..+++++.+++.+.. +.+ . .+.+..+
T Consensus 1099 ~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~wl~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~ 1175 (1495)
T PLN03232 1099 LSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS-SNRWLTIR--LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLL 1175 (1495)
T ss_pred hHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHccccccccccchHHHHHH
Confidence 579999999887766665554433332221111 11111111 1111222233334444442 332 1 2233345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccccc--cccccccEEEEEEEEEcCCCCCCCceee
Q 017091 76 VLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVK--LQRLMGHVQFVNISFHYPSRPTVPILNH 152 (377)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~--~~~~~~~i~~~~v~~~y~~~~~~~vL~~ 152 (377)
+.|...+..|+..+...+..+..+..+++|+.++++.++|.... ....+ .++..+.|+++||+|+|+.+ .+++|+|
T Consensus 1176 ~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~ 1254 (1495)
T PLN03232 1176 LSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHG 1254 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCccccc
Confidence 66777888899999999999999999999999999987764321 11111 11234579999999999643 2479999
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 232 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 232 (377)
+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++..++|++|+||||+|.+|++|++|||.++.
T Consensus 1255 isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~ 1334 (1495)
T PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS 1334 (1495)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~ 310 (377)
..++++++++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|+|||||||||+||+++++.+++
T Consensus 1335 --~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~ 1412 (1495)
T PLN03232 1335 --EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQR 1412 (1495)
T ss_pred --CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 567899999999999999999999999999974 5899999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC-HHHHHHHHHHh
Q 017091 311 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLVKRQT 373 (377)
Q Consensus 311 ~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 373 (377)
.|++.. +++|+|+|||+++++..||+|++|++|+|+|.|+|+++++++ +.|+++++.+.
T Consensus 1413 ~L~~~~----~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1413 TIREEF----KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred HHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 998873 478999999999999999999999999999999999999886 48999987643
No 35
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-63 Score=561.01 Aligned_cols=357 Identities=26% Similarity=0.373 Sum_probs=284.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC---------cCHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY-RSTQVMAVLLGGMSIMIGQ---------VSPEQ 71 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~v~~g~---------lt~g~ 71 (377)
+++||+|+.++++.+.+.+..+...+. .........+..... .+..+++++.+.+.+..+. .++|.
T Consensus 1102 i~tIraf~~~~~f~~~~~~~~~~~~~~----~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~ 1177 (1622)
T PLN03130 1102 LSTIRAYKAYDRMAEINGRSMDNNIRF----TLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGL 1177 (1622)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHH
Confidence 579999999887666555444433222 111111111111111 1122223333344454332 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc-c--cccccccccEEEEEEEEEcCCCCCCC
Q 017091 72 LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE-G--VKLQRLMGHVQFVNISFHYPSRPTVP 148 (377)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~~v~~~y~~~~~~~ 148 (377)
+ +.|...+..++..+...+..+..+..+++|+.++++.|+|.....+ . ...++..+.|+++||+|+|+++ .++
T Consensus 1178 ~---ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~ 1253 (1622)
T PLN03130 1178 L---LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPP 1253 (1622)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCc
Confidence 3 3455556666667777777889999999999999998776432111 1 1111234579999999999643 247
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
+|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++..++|++|++|||+|.+|++||+|||
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNL 1333 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL 1333 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
.++. ..++++++++++.++++++++.+|.|++|.+++ .+||||||||+||||||+++|+|||||||||+||+++++
T Consensus 1334 d~~~--~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~ 1411 (1622)
T PLN03130 1334 DPFN--EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411 (1622)
T ss_pred CcCC--CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence 9863 457899999999999999999999999999985 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHHH
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQ 372 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 372 (377)
.|++.|++.. +++|+|+|+|+++++..||||+||++|+|+|.|+|++++++ ++.|++++...
T Consensus 1412 ~Iq~~I~~~~----~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1412 LIQKTIREEF----KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred HHHHHHHHHC----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 9999999873 47899999999999999999999999999999999999987 58899988764
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9e-61 Score=538.32 Aligned_cols=361 Identities=21% Similarity=0.303 Sum_probs=293.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+.+||+||.++.+.+++.+..+..............++......+..+..+++++ ..+....++.|.+..++.|...
T Consensus 1074 l~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~---l~~~~~~~~~g~~g~~l~~~~~ 1150 (1490)
T TIGR01271 1074 LWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTF---IAIGTNQDGEGEVGIILTLAMN 1150 (1490)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCccHHHHHHHHHHH
Confidence 4789999999999999988887554433222222222222222222111111111 1111223455666556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-----------------cccccccccEEEEEEEEEcCCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-----------------VKLQRLMGHVQFVNISFHYPSR 144 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~~~v~~~y~~~ 144 (377)
+..++..+...+..+..+..+++|+.++++.+++...+... ...++..+.|+++||+|+|+..
T Consensus 1151 l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~ 1230 (1490)
T TIGR01271 1151 ILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA 1230 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC
Confidence 88888888889999999999999999999887663311100 0011234579999999999753
Q ss_pred CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 017091 145 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 224 (377)
Q Consensus 145 ~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 224 (377)
.+++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|++||.|+..++...+|++|+||||+|.+|++||
T Consensus 1231 -~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTI 1308 (1490)
T TIGR01271 1231 -GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTF 1308 (1490)
T ss_pred -CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCH
Confidence 3579999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~ 302 (377)
++||... ...++++++++++.+++.+++..+|.|++|.+++ .+||||||||+||||||+++|+|||||||||+||+
T Consensus 1309 R~NLdp~--~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~ 1386 (1490)
T TIGR01271 1309 RKNLDPY--EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP 1386 (1490)
T ss_pred HHHhCcc--cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence 9999754 2457899999999999999999999999999985 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 303 ~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
.+++.+++.|++.. +++|||+|||+++.+..||+|++|++|+|++.|+|++++++++.|+++++.+.
T Consensus 1387 ~Te~~I~~~L~~~~----~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1387 VTLQIIRKTLKQSF----SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred HHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999873 47899999999999999999999999999999999999988889999987643
No 37
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-62 Score=434.06 Aligned_cols=217 Identities=35% Similarity=0.529 Sum_probs=193.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC-CHHHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~ 209 (377)
+|+++||+|+|++. .+|+|||++|++||+++|+||||||||||||||+||.+|++|+|.++|.++... +...+|++
T Consensus 2 mi~i~~l~K~fg~~---~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGDK---EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCCe---EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 48999999999854 699999999999999999999999999999999999999999999999877432 56778999
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+|+|||+.+|| ..||.||+.++.. ...+ .+...+.++++++.+..+.+| .+|||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP---------~qLSGGQqQRVAIAR 149 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 149 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc---------cccCcHHHHHHHHHH
Confidence 99999999999 6899999988631 1112 223345677788888888777 779999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|+++|+|||||+|||+...++++.++++.+ .|.|.|+|||++.+++. ||||++|++|+|++.|+|++++.+
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~---eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH---cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999975 48999999999999987 999999999999999999999987
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 227 p 227 (240)
T COG1126 227 P 227 (240)
T ss_pred C
Confidence 4
No 38
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.8e-60 Score=491.12 Aligned_cols=339 Identities=19% Similarity=0.239 Sum_probs=275.0
Q ss_pred chhhhhhCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEE--KELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~ 79 (377)
++++|+|+.++ .+.+++.+..++..+...+..+...........+..+...+.+++|++. |.+|+|.+++|++|.
T Consensus 201 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~ 277 (555)
T TIGR01194 201 AKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLAL 277 (555)
T ss_pred HHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHH
Confidence 57899999854 5577888888777776655443333332322333223333334444433 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cc--ccccc----ccccccccEEEEEEEEEcCCCC--CCCc
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN--QF--LSEGV----KLQRLMGHVQFVNISFHYPSRP--TVPI 149 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~--~~--~~~~~----~~~~~~~~i~~~~v~~~y~~~~--~~~v 149 (377)
..+..|+..++..+..++.+..+++|+.++++.++++ .. +.... ......+.|+++||+|+|++.+ .+++
T Consensus 278 ~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~ 357 (555)
T TIGR01194 278 LYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFA 357 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCce
Confidence 9999999999999999999999999999998642211 10 00000 0011124699999999997531 1369
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~ 229 (377)
|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++..++|++++||+|++.+|+.|+++|..
T Consensus 358 l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~ 437 (555)
T TIGR01194 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG 437 (555)
T ss_pred eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999952
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHH
Q 017091 230 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~ 309 (377)
++.+++++.++++.++++++++.+|.|++|. .+||||||||++||||++++|+++|||||||+||+++++.+.
T Consensus 438 ----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~---~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~ 510 (555)
T TIGR01194 438 ----EHASLDNAQQYLQRLEIADKVKIEDGGFSTT---TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFY 510 (555)
T ss_pred ----cchhHHHHHHHHHHcCCchhhcccccccCCc---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 3456778889999999999999999999985 679999999999999999999999999999999999999998
Q ss_pred HHHH-HhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 310 GVLH-ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 310 ~~l~-~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
+.+. .++. +++|+|+|||+++.+..||+|++|++|++++.-
T Consensus 511 ~~l~~~~~~---~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 511 EELLPDLKR---QGKTIIIISHDDQYFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHHHHHHHh---CCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 8654 4432 478999999999998889999999999998754
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.1e-59 Score=524.77 Aligned_cols=349 Identities=22% Similarity=0.298 Sum_probs=290.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.+++++..++..+...+.............. ....+.++++|++++..|.+|+|.+++++.++..
T Consensus 489 i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~ 566 (1495)
T PLN03232 489 MDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS--IPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAV 566 (1495)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999887766555544443332222111111 1122334678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+.++..+++|+.++++.+++..... .........|+++|++|+|+...++++|+|+||+|++||
T Consensus 567 l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge 644 (1495)
T PLN03232 567 LRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS 644 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCC
Confidence 999999999999999999999999999998765422111 101112235999999999975333579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+++|+|+++|++|.+. .+|.+|+||+|+|++|++||+|||.+|.+ .+++++
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~--~~~e~~ 710 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVRENILFGSD--FESERY 710 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHHhhcCCc--cCHHHH
Confidence 9999999999999999999999999999763 24678999999999999999999999853 567889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHH-HHHhhcc
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-LHALRND 318 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~-l~~l~~~ 318 (377)
.++++.+++.++++.+|.|++|.+++ .+|||||||||+||||++++|+|+|||||||+||+++++.+.+. +...
T Consensus 711 ~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~--- 787 (1495)
T PLN03232 711 WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE--- 787 (1495)
T ss_pred HHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh---
Confidence 99999999999999999999999985 58999999999999999999999999999999999999988654 5443
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
.+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|.+++..+
T Consensus 788 -l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~ 840 (1495)
T PLN03232 788 -LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840 (1495)
T ss_pred -hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhc
Confidence 24789999999999999999999999999999999999998888888887643
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-58 Score=519.37 Aligned_cols=345 Identities=22% Similarity=0.351 Sum_probs=287.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS--TQVMAVLLGGMSIMIGQVSPEQLTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~ 79 (377)
+++||+|+.|+.+.+++++..++..+...+.... ..+..++... ..+.++++|++.+..|.+|+|.+++++.++
T Consensus 489 i~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~ 564 (1622)
T PLN03130 489 MDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLL----SAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLF 564 (1622)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6899999999999988887666544433332222 2222222111 234566788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeC
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEA 159 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~ 159 (377)
..+..|+..+...+..+.++..+++|+.++++.++....+.. . .......|+++|++|+|+..+++++|+|+||+|++
T Consensus 565 ~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~-~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~ 642 (1622)
T PLN03130 565 AVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP-P-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPV 642 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC-c-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecC
Confidence 999999999999999999999999999999976543211111 0 01112359999999999753335799999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 238 (377)
||+++|+||||||||||+++|+|+++|++ |+|.+ |.+|+||+|+|++|++||+|||.||.+ .++
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~--~d~ 707 (1622)
T PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSP--FDP 707 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCc--ccH
Confidence 99999999999999999999999999999 89974 457999999999999999999999854 467
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH-HHHHh
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG-VLHAL 315 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~-~l~~l 315 (377)
+++.++++.+++.++++.+|.|++|.+++ .+|||||||||+||||++++|+|+|||||||+||+++++.+.+ .+...
T Consensus 708 e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~ 787 (1622)
T PLN03130 708 ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE 787 (1622)
T ss_pred HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH
Confidence 88999999999999999999999999985 5899999999999999999999999999999999999988764 55544
Q ss_pred hccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 316 RNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 316 ~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
. +++|+|+|||+++.+..||+|++|++|++++.|++++++++.+.|.+++..
T Consensus 788 l----~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~ 839 (1622)
T PLN03130 788 L----RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMEN 839 (1622)
T ss_pred h----cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHh
Confidence 2 478999999999999999999999999999999999999888888888764
No 41
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-60 Score=435.95 Aligned_cols=221 Identities=35% Similarity=0.540 Sum_probs=197.8
Q ss_pred cEEEEEEEEEcCCC--CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HH
Q 017091 131 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~ 205 (377)
+|++++|+|.|+.+ ...++|+||||+|++||++||+|+||||||||+|++.+|.+|++|+|.+||+++..++. +.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999752 12469999999999999999999999999999999999999999999999999887764 45
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 206 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
.|++||++||+++|+ +.||++|++|+..- .....++.+.++.+++.++.+.+| .+|||||||||+
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVa 151 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVA 151 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHH
Confidence 678999999999999 58999999986431 112345666788888888888877 789999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||||+.+|+|||.|||||+|||++.+.|+++|++++++ .|.||++|||.|+.++. ||||.||++|+++|.|+..++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~--lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRE--LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999999875 59999999999999987 999999999999999999999
Q ss_pred hhcC
Q 017091 359 LHKG 362 (377)
Q Consensus 359 ~~~~ 362 (377)
+.++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8764
No 42
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-57 Score=493.82 Aligned_cols=360 Identities=27% Similarity=0.429 Sum_probs=298.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM--IGQVSPEQLTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~--~g~lt~g~l~~~~~~~ 79 (377)
+.|||+|+.++++.+++....+...+...-......++..-...+.++. ++..+...+. .+.+++|..-..+.|.
T Consensus 1007 lsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~---v~~~al~~vl~~~~~~~~g~vGLslsya 1083 (1381)
T KOG0054|consen 1007 LSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLV---VLIAALFAVLLPSGLISPGLVGLSLSYA 1083 (1381)
T ss_pred cceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHccCCCCCcchHHHHHHHH
Confidence 3589999999999999988777655543322222222222222222221 1222222222 2226788888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc--cc-ccccccccccEEEEEEEEEcCCCCCCCceeeeeEE
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL--SE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 156 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~ 156 (377)
..+...++.+.....++...+.+++|+.++.+.|+|.... .. +.+.+|..|.|+++|++.+|..+ ...||+||||+
T Consensus 1084 l~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~ 1162 (1381)
T KOG0054|consen 1084 LQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFT 1162 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEE
Confidence 9999999999999999999999999999999987772211 11 12224567789999999999754 35899999999
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 236 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 236 (377)
|+|||++||||+.|||||||+++|.++.+|.+|+|.|||.|+.++...++|++++.+||||.||++|+|.|+.-. ...
T Consensus 1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~ 1240 (1381)
T KOG0054|consen 1163 IKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEY 1240 (1381)
T ss_pred EcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999742 246
Q ss_pred CHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 017091 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314 (377)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~ 314 (377)
++++++++++++++.+++.++|.++++.+. +.++|-||||.+||||||+++++||+|||+|+++|+++...|++.|++
T Consensus 1241 sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1241 SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 789999999999999999999999999886 469999999999999999999999999999999999999999999997
Q ss_pred hhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHH
Q 017091 315 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKR 371 (377)
Q Consensus 315 l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 371 (377)
-. +++|||.|+||++++.+||||+||++|+++|.|+|++|+++ +..|.++..+
T Consensus 1321 ~F----~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1321 EF----KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred Hh----cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 64 47899999999999999999999999999999999999977 5556555544
No 43
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.7e-59 Score=417.48 Aligned_cols=218 Identities=34% Similarity=0.535 Sum_probs=195.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||||.|++ +.+++|+||+|++||+++++|||||||||+||+|.++++|++|+|++||+++.+++..++|++|
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 4899999999984 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCc-cccHHHHHhcCC-----CCCCCHHHHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~-----~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
|||-|...|| ++||.|||++-. .....++++.+.++.++++ ++.+++| ++|||||+|||.+||
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP---------~eLSGGQQQRVGv~R 148 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP---------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc---------hhcCcchhhHHHHHH
Confidence 9999999999 689999998631 1111234455666777774 4777777 789999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|+|||+|||+++|||.++.++++.+.+++++ -|+|||+||||++++-. +|||.+|++|+|+..++|++++.+
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~--l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999875 58999999999999855 999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
No 44
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-55 Score=454.79 Aligned_cols=275 Identities=25% Similarity=0.311 Sum_probs=221.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCC
Q 017091 68 SPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTV 147 (377)
Q Consensus 68 t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~ 147 (377)
+.+.+.++..+...+..|+..+...+..++.+..+.+|+.++++.+++...+. ....+ ..+.|+++||+|+|+++ .
T Consensus 261 ~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~-~~~~~-~~~~i~~~~v~f~y~~~--~ 336 (547)
T PRK10522 261 DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPR-PQAFP-DWQTLELRNVTFAYQDN--G 336 (547)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-ccccC-cCceEEEEEEEEEeCCC--C
Confidence 44444444555555678999999999999999999999999876544322111 11111 12369999999999743 3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+||+|++.+|++|+++|
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 69999999999999999999999999999999999999999999999999999998899999999999999999999998
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHH
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~ 307 (377)
+ ...+++++.++++..++.+.+.. +.+. .++.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 417 ---~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~ 487 (547)
T PRK10522 417 ---G--KPANPALVEKWLERLKMAHKLEL-EDGR---ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE 487 (547)
T ss_pred ---c--CchHHHHHHHHHHHcCCchhhhc-cccC---CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 2 23445555556666555544332 2221 1246899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEE-cChHH
Q 017091 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV-GNHAE 357 (377)
Q Consensus 308 i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~-g~~~~ 357 (377)
+.+.+.+..+. .++|+|+|||+++.++.||+|++|++|++++. |++.+
T Consensus 488 i~~~l~~~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 488 FYQVLLPLLQE--MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred HHHHHHHHHHh--CCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchh
Confidence 99988765321 37899999999999889999999999999987 34433
No 45
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.1e-57 Score=416.05 Aligned_cols=224 Identities=30% Similarity=0.493 Sum_probs=198.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4899999999985 3799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCCC------C---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYGCPKDV------K---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~~~~~~------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
|||||.+.. +..||+|-+.+|+.++. + .+.+.++++..++.++.++.- .+|||||||||.|
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~---------~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV---------DELSGGERQRVLI 149 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc---------cccChhHHHHHHH
Confidence 999999754 58899999999864321 1 224666788888887766543 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+++|++||||||||+||...+.++++.++++.++ +|+|+|+|+||++.+. +||++++|++|+++..|+|++++
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~--~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE--KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999864 5899999999999875 59999999999999999999998
Q ss_pred hcCHHHHHHH
Q 017091 360 HKGRLYAKLV 369 (377)
Q Consensus 360 ~~~~~~~~~~ 369 (377)
+.+ ..++.|
T Consensus 228 T~e-~l~~Vy 236 (258)
T COG1120 228 TEE-NLREVY 236 (258)
T ss_pred CHH-HHHHHh
Confidence 754 334443
No 46
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.9e-56 Score=398.57 Aligned_cols=226 Identities=31% Similarity=0.503 Sum_probs=196.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
.|++++|+++|+++ .|++||||+|++||+++|+||||||||||+|+|.|+++|++|+|+++|+++..++.. ++|
T Consensus 8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 59999999999754 699999999999999999999999999999999999999999999999999888764 468
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCC--CCCHHHHH----HHHHHcCHHHH-HHhCCCCcccccCCCCCChHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPK--DVKNEDIE----WAAKQAYVHEF-ILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~--~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
+++|++||+..|| ++||+||+.|.... +..++.++ ..++.+|+... .+.+| .+|||||++|++
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRva 155 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRVA 155 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHHH
Confidence 8999999999999 78999999986421 22233332 23555666555 55566 789999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
||||++.+|+++++|||||||||.+...+-++|+++++. -|.|+++||||++.+.. ||||+++.+|+|+..|+++++
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~--lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh--hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999864 58999999999999876 899999999999999999999
Q ss_pred hhcCHHH-HHHHH
Q 017091 359 LHKGRLY-AKLVK 370 (377)
Q Consensus 359 ~~~~~~~-~~~~~ 370 (377)
.+.+..| ++++.
T Consensus 234 ~~sd~P~v~qf~~ 246 (263)
T COG1127 234 LASDDPWVRQFFN 246 (263)
T ss_pred HhCCCHHHHHHhc
Confidence 9875544 45443
No 47
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.5e-54 Score=484.08 Aligned_cols=348 Identities=20% Similarity=0.291 Sum_probs=281.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc--CCcCHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS--TQVMAVLLGGMSIMI--GQVSPEQLTKYVL 77 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~~--g~lt~g~l~~~~~ 77 (377)
+++||.|+.|+.+.+++++..++..+...+.... ......+... ..+.++.++++.+.. +.++++.+++.+.
T Consensus 506 ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~ 581 (1522)
T TIGR00957 506 IKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYL----HAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLA 581 (1522)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 6899999999999999887766654443332222 1111121111 122333455676663 5689999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccc-ccccEEEEEEEEEcCCCCCCCceeeeeEE
Q 017091 78 YCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR-LMGHVQFVNISFHYPSRPTVPILNHVCLT 156 (377)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~v~~~y~~~~~~~vL~~isl~ 156 (377)
++..+..|+..+...+..+.++..+.+|+.++++.+++............ ....|+++|++|+|++. .+++|+|+||+
T Consensus 582 l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~ 660 (1522)
T TIGR00957 582 LFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFS 660 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEE
Confidence 88889999999999999999999999999999987643221100011111 11269999999999753 24699999999
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 236 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 236 (377)
|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+|.+|++||+|||.++.+ .
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~--~ 725 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA--L 725 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc--c
Confidence 999999999999999999999999999999999999987 4999999999999999999999853 3
Q ss_pred CHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 017091 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314 (377)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~ 314 (377)
.+++..++.+.+++.+.++.+|.|++|.++. .+||||||||++||||++++|+++|||||||+||+.+++.+.+.+..
T Consensus 726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805 (1522)
T ss_pred CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 4556677788888889999999999998874 68999999999999999999999999999999999999999998865
Q ss_pred hhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 315 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 315 l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
.... .+++|+|+|||+++.+..||+|++|++|++++.|+++++.++.+.|.+++.
T Consensus 806 ~~~~-~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 860 (1522)
T TIGR00957 806 PEGV-LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860 (1522)
T ss_pred hhhh-hcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHH
Confidence 3211 247899999999999988999999999999999999999988888887765
No 48
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-56 Score=423.95 Aligned_cols=218 Identities=35% Similarity=0.524 Sum_probs=198.8
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
|..|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+||.+|++|+|.|+|.+++++++. .+
T Consensus 1 M~~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R 75 (338)
T COG3839 1 MAELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KR 75 (338)
T ss_pred CcEEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HC
Confidence 4569999999999753 299999999999999999999999999999999999999999999999999998876 46
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.||+|||+..|| ++||+|||+|+... ...++++.++++..++.+++++.| .+|||||||||||||
T Consensus 76 ~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P---------~~LSGGQrQRVAlaR 146 (338)
T COG3839 76 GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP---------LQLSGGQRQRVALAR 146 (338)
T ss_pred CEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc---------ccCChhhHHHHHHHH
Confidence 799999999999 68999999998642 223567788899999999999998 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+++|+++|||||+|+||++.+..+...|++++++ -|.|+|+||||..++.. +|||++|++|+|.+.|+|.+++++
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~--l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER--LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh--cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999999999999999998764 58899999999998865 999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 225 P 225 (338)
T COG3839 225 P 225 (338)
T ss_pred c
Confidence 3
No 49
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1e-53 Score=449.04 Aligned_cols=325 Identities=20% Similarity=0.240 Sum_probs=263.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CCcCHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS--TQVMAVLLGGMSIM-I----GQVSPEQLTK 74 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----g~lt~g~l~~ 74 (377)
+++||+|+.|+.+.+++++..+++.+...+..+..+.+.++..++... ..++.+++|+..+. . |.+|+|.+++
T Consensus 288 ~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~ 367 (659)
T TIGR00954 288 SEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQ 367 (659)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHH
Confidence 579999999999999999999999888888777766666665555432 22233334443332 2 7899998765
Q ss_pred -HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--------cc--cc-------------ccccc
Q 017091 75 -YVLY---CEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF--------LS--EG-------------VKLQR 127 (377)
Q Consensus 75 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~--------~~--~~-------------~~~~~ 127 (377)
|+.+ +..+..|+..++..+..++++.++.+|++++++.+++... +. +. .....
T Consensus 368 ~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (659)
T TIGR00954 368 EFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEY 447 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccc
Confidence 5544 5667899999999999999999999999999976432110 00 00 00111
Q ss_pred ccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh
Q 017091 128 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 128 ~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
..+.|+++||+|.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 448 ~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~ 514 (659)
T TIGR00954 448 QDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------K 514 (659)
T ss_pred CCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------C
Confidence 22469999999999743 3699999999999999999999999999999999999999999998763 4
Q ss_pred cceEEEccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~i 280 (377)
++++||||+|.+|+.|++||+.++.. ....++++.++++.+++.+++++ |.|+++..+. .+||||||||++|
T Consensus 515 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~i 593 (659)
T TIGR00954 515 GKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAM 593 (659)
T ss_pred CcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHH
Confidence 57999999999998899999998642 22356678889999999998877 8888887763 6899999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
|||++++|+++|||||||+||+.+++.+.+.+++. |+|+|+||||++.++.||++++|+.
T Consensus 594 ARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~------~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 594 ARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF------GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999888653 7899999999999988999999973
No 50
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-56 Score=426.37 Aligned_cols=217 Identities=32% Similarity=0.535 Sum_probs=197.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..++++||+++|++ ..+++|+||+|++||+++|+||||||||||||+|+||.+|++|+|.++|+++...++. ++.
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 35999999999984 4799999999999999999999999999999999999999999999999999998775 578
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC-CC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP-KD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~-~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
||+|||+..|| ++||+|||+||.. .. .. .+++.++++.+++.++.++.| ++|||||||||||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p---------~qLSGGQqQRVALAR 149 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP---------HQLSGGQQQRVALAR 149 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh---------hhhChHHHHHHHHHH
Confidence 99999999999 6999999999975 11 12 236778888999999888888 779999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||.|+||.+-+.++...++++.++ .|.|.|+||||-+++- .+|||++|++|+|...|+|++++..
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~--~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE--LGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999999875 5999999999999875 5999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 4
No 51
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-56 Score=389.97 Aligned_cols=220 Identities=30% Similarity=0.465 Sum_probs=192.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC-----CeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-----G~I~i~g~~i~~~--~~ 203 (377)
.++++||++.|++ +.+|+|||++|++++++|++||||||||||||++.++.+..+ |+|.++|+++-+. +.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999985 369999999999999999999999999999999999998775 9999999999754 57
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
.++|++||+|||.|..|++||+||+.||...+ .-++.++++++.+.+++-+... ++ ..+..||||||||+
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr---L~--~sa~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR---LH--KSALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH---hh--CCccCCChhHHHHH
Confidence 88999999999999999999999999984321 1234567788888887654321 11 11246999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
||||||+.+|+|||+|||||+|||.+..+|.++|.+++ +..|||+|||+|..+.+ +|+..++..|+++|.|+.++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk----~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK----KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH----hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 99999999999999999999999999999999999996 36799999999999877 89999999999999999999
Q ss_pred HhhcC
Q 017091 358 LLHKG 362 (377)
Q Consensus 358 l~~~~ 362 (377)
++.+.
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 99875
No 52
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.7e-55 Score=395.61 Aligned_cols=208 Identities=38% Similarity=0.538 Sum_probs=176.4
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---H-H
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---W-L 206 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~-~ 206 (377)
++++||++.|+.+. ..++|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++..++.. . +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 24699999999999999999999999999999999999999999999999999988743 2 3
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCC----CCC-CCHHHHHHHHHHcCHHHHHH-hCCCCcccccCCCCCChHHHHHHH
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGC----PKD-VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~----~~~-~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
|++||||||+.+|+ ..|+.|||.++. ... ...+.....++.+++.+... +.| .+||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p---------~eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------SELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------hhcCHHHHHHHH
Confidence 56799999999988 689999998532 111 11233344555556654444 444 789999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~ 350 (377)
|||||+.+|++||+||||++||.++.+.|++++.++.++ .|+|+|+||||+..+..|||++.|++|++.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~--~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE--RGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999999764 589999999999999999999999999953
No 53
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-55 Score=391.68 Aligned_cols=216 Identities=35% Similarity=0.522 Sum_probs=187.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC---HHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~r 207 (377)
+|+++||++.||++ +++|+||||+|++||+++|+||||||||||||+|.|+.+|++|+|.++|.++..++ .+.+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 59999999999754 57999999999999999999999999999999999999999999999999988776 45678
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 273 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgG 273 (377)
++|||+||++.|. ..||.+|+..|.-. ........++++++++.+..... ..+||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG 151 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG 151 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence 8999999999998 68999999876321 11122334456666665554332 2679999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 352 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~ 352 (377)
|+|||+|||||+++|+++|.|||+|+|||.+.+++++.|+++.++ .|.|+|+.-|+++.++. ||||+-|++|+|+.+
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~--~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE--DGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999875 68999999999999965 999999999999999
Q ss_pred cChHHHh
Q 017091 353 GNHAELL 359 (377)
Q Consensus 353 g~~~~l~ 359 (377)
|++.++-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9998854
No 54
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-54 Score=398.72 Aligned_cols=215 Identities=30% Similarity=0.542 Sum_probs=187.2
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++|++++|++. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+...... +.+
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLR 76 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCe
Confidence 359999999999753 59999999999999999999999999999999999999999999999988755321 467
Q ss_pred eEEEccCCc---CccccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 210 IGFVGQEPQ---LLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 210 i~~v~Q~~~---l~~~tv~eni~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
||||||... -|+.||+|-+.+|+... .+.+.+.++++.+++.++.++.- .+|||||+||
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i---------~~LSGGQ~QR 147 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI---------GELSGGQKQR 147 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc---------cccCcHHHHH
Confidence 999999764 36899999999874321 12467888999999988766533 5799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|.|||||+++|++|+|||||+|+|+.++..+.++|+++++ +|+||++||||++.+.. +|+|+.|+ ++++..|+++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~---eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ---EGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 9999999999999999999999999999999999999975 39999999999999865 99999995 6788999999
Q ss_pred HHhhcCH
Q 017091 357 ELLHKGR 363 (377)
Q Consensus 357 ~l~~~~~ 363 (377)
++++.+.
T Consensus 224 ~~~~~~~ 230 (254)
T COG1121 224 EVLTEEN 230 (254)
T ss_pred hccCHHH
Confidence 9987543
No 55
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2e-55 Score=380.44 Aligned_cols=210 Identities=31% Similarity=0.492 Sum_probs=189.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
+|+++||++.|+++ +++|+||||+|++||++.|+||||||||||+|+|++..+|++|+|+++|.++..++.+ .+|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 48999999999875 5799999999999999999999999999999999999999999999999999887643 579
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
++||+||||..|. ..||+||++|+.. +..-.+++.++++.+++.+-...+| .+|||||||||+||
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP---------~~LSGGEQQRvaIA 149 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP---------SQLSGGEQQRVAIA 149 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc---------cccCchHHHHHHHH
Confidence 9999999999887 7899999998642 2223556777889999988888888 67999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++.+|++||.||||.+|||....++++++.++.+ .|.||+|.|||.+.+.. --|++.+++|+++.+..
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999974 59999999999999987 57899999999987654
No 56
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-55 Score=395.06 Aligned_cols=201 Identities=34% Similarity=0.528 Sum_probs=178.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+++++|+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 5899999999986 3699999999999999999999999999999999999999999999999988443 3569
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+||||++.|| -.||+||+.++.... ...+...+.++.+++.++.+++| ++|||||||||+|||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P---------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP---------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc---------cccChHHHHHHHHHHHH
Confidence 9999999999 589999999875421 12345667788888888888888 78999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEE
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRII 350 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~ 350 (377)
+.+|++||||||+++||+.++..+++.+.++.++ .++||++||||++++-. +|||++|.+ |+|.
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~--~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEE--TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999998764 57899999999999865 999999998 5553
No 57
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-54 Score=387.76 Aligned_cols=229 Identities=35% Similarity=0.504 Sum_probs=195.6
Q ss_pred ccEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHHh
Q 017091 130 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLR 207 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r 207 (377)
..++++|+++.|+++. ..++|+||||+|.+||++||+||||||||||.++|+|+.+|++|+|.++|.++.... .+.++
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 3589999999998642 125999999999999999999999999999999999999999999999998876543 33567
Q ss_pred cceEEEccCCcC---ccccHHHHHhcCCCC---CCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQL---LQMDIKSNIMYGCPK---DVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l---~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.|.+|||||.- ...||++-|.-+... +...+++.++++.+++ .++++++| ++|||||+|||||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P---------~eLSGGQ~QRiaI 152 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP---------HELSGGQRQRIAI 152 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc---------hhcChhHHHHHHH
Confidence 889999999953 246898888654322 2234557778888888 45778888 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||..+|++||||||||+||+..+.+|++++.+++++ .+.|.|+||||+..+.+ ||||+||++|+++|.++.+++.
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999999875 58899999999999987 9999999999999999999998
Q ss_pred hc-CHHHHHHH
Q 017091 360 HK-GRLYAKLV 369 (377)
Q Consensus 360 ~~-~~~~~~~~ 369 (377)
.. ...|.+.+
T Consensus 231 ~~~~h~ytr~L 241 (252)
T COG1124 231 SHPSHPYTREL 241 (252)
T ss_pred cCCccHHHHHH
Confidence 76 44465443
No 58
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-53 Score=402.66 Aligned_cols=233 Identities=24% Similarity=0.415 Sum_probs=211.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..++...+|+.|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48999999999643 2469999999999999999999999999999999999997 799999999999888888889999
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p 288 (377)
+|+||++.+|+.|+++|+.... ....++++++++.+++.++++.+|.++++.+++ .+||||||||++||||++.+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999996421 234677888899999999999999999998863 689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
+||||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+..||||++|++|++++.|+|+++++..+.|+++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 233 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAF----ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA 233 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHH
Confidence 9999999999999999999999999763 478999999999998889999999999999999999999987778887
Q ss_pred HHH
Q 017091 369 VKR 371 (377)
Q Consensus 369 ~~~ 371 (377)
+..
T Consensus 234 ~~~ 236 (275)
T cd03289 234 ISP 236 (275)
T ss_pred Hhh
Confidence 754
No 59
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-54 Score=396.50 Aligned_cols=219 Identities=36% Similarity=0.607 Sum_probs=194.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC-CCHHHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-~~~~~~r~~ 209 (377)
.++++|++|+|+++ .++|+++||+|++||.++|+||||||||||+++++|+++|++|+|.++|.++.. .+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58999999999864 479999999999999999999999999999999999999999999999999873 667889999
Q ss_pred eEEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+|||||+| ++|..||.|.++||... ... ++++.++++.+++.++.++.| .+|||||||||+||.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p---------~~LSGGqkqRvaIA~ 151 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP---------FNLSGGQKQRVAIAG 151 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc---------cccCCcceeeHHhhH
Confidence 99999999 67899999999998531 122 234556777777777766555 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+|+.+|++||||||||+||+..++.+++.+++++++ .|+|+|++|||++.+.. |||+++|++|+++.+|+|++++++
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~--~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999763 47899999999999976 999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 230 ~ 230 (235)
T COG1122 230 A 230 (235)
T ss_pred h
Confidence 4
No 60
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-52 Score=450.73 Aligned_cols=348 Identities=24% Similarity=0.338 Sum_probs=280.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS-IMIGQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~l~~~~~~~~ 80 (377)
|++||.|+.|+.+.++.++.-++-...-.+.....++......... ..+.++.++++. ...+.+|+...++.+.++.
T Consensus 390 IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p--~lv~~~tF~~~v~~~~~~lt~~~aF~slalfn 467 (1381)
T KOG0054|consen 390 IKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSP--VLVSVVTFVVFVLLLGNLLTASTAFTSLALFN 467 (1381)
T ss_pred hHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhccCccccHhHHHHHHHHHH
Confidence 7899999999988887766544333322222222222211111111 222334444555 4566788888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 81 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
.+..|+..+...+..+.++.++.+|+.+++..+..................++++|.+|+++.....+.|+||||+|++|
T Consensus 468 iLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G 547 (1381)
T KOG0054|consen 468 ILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKG 547 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCC
Confidence 99999999999999999999999999999977543322111001112233699999999997633346999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
+.+||+||.|||||+|+.+|+|.++..+|+|.++|. ++||||.|++|++||+|||.||.+ ..+++
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~--~d~~r 612 (1381)
T KOG0054|consen 548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSP--YDEER 612 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCcc--ccHHH
Confidence 999999999999999999999999999999999984 899999999999999999999954 45788
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHH-Hhhc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH-ALRN 317 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~-~l~~ 317 (377)
.+++.+.|.+++.++.+|.|..|.+|+ .+|||||||||+||||++++++|+|||.|+|++|.+..+.+.+..- .+
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-- 690 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-- 690 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh--
Confidence 899999999999999999999999996 4899999999999999999999999999999999998887776543 33
Q ss_pred cCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 318 DCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 318 ~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
-+++|+|+|||.++.++.||+|++|++|+|.+.|+++|+++....+.++..
T Consensus 691 --L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~ 741 (1381)
T KOG0054|consen 691 --LRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAH 741 (1381)
T ss_pred --hcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhh
Confidence 357999999999999999999999999999999999999988888887743
No 61
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.4e-53 Score=414.31 Aligned_cols=220 Identities=31% Similarity=0.475 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---H
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 206 (377)
+|+++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..+ .
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 389999999996421 246999999999999999999999999999999999999999999999999998776543 4
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
|++|||+||++.+| ..|++||+.++... ... .+++.+.++.+++.++.+..| .+|||||||||+|
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~I 151 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAI 151 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 77899999999998 58999999875321 111 223445666666666655555 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++||+|||||+||+.++..+++.|++++++ .|.|||+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 ARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~--~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999753 48899999999999965 9999999999999999999998
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 64
No 62
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.7e-54 Score=368.06 Aligned_cols=214 Identities=35% Similarity=0.531 Sum_probs=193.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
+.+++|.|+|+.. ==.++++|++||++||+||||||||||+++|+|+..|.+|+|++||++....++. .+-++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 6789999999743 3578999999999999999999999999999999999999999999999876654 46799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCC-----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++||+.+|| ..||.+|+.+|..+.. ..+.+..++.++|+..+.+++| .+|||||||||+|||+|+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP---------~~LSGGqRQRvALARclv 145 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc---------cccCchHHHHHHHHHHHh
Confidence 999999999 7899999999875432 2456778899999999999999 679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 363 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~ 363 (377)
++-+|||||||+|+|||.-+.++..++.+++.+ ++.|++||||.++.+.. +|+++++++|+|.+.|+.++++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E--~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999999999999999875 58999999999999976 99999999999999999999987643
No 63
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.4e-53 Score=390.20 Aligned_cols=233 Identities=48% Similarity=0.754 Sum_probs=204.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999643 246999999999999999999999999999999999999999999999999987766667788899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+||++.+|+.|+.||+.++.. ....+.+...++..++.++++.+|.++++... ..+|||||||||+|||||+.+|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999888899999988643 23344555666777888889988877776543 46899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+|||||||++||+.+++.+.+.|+++. +|+|||++||+++.+..||++++|++|++++.|++++++.+.+.|..++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDIC----AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999999884 3789999999999997799999999999999999999998877787765
Q ss_pred H
Q 017091 370 K 370 (377)
Q Consensus 370 ~ 370 (377)
.
T Consensus 235 ~ 235 (237)
T cd03252 235 Q 235 (237)
T ss_pred h
Confidence 4
No 64
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-54 Score=395.31 Aligned_cols=216 Identities=31% Similarity=0.494 Sum_probs=190.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE---eCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~---~i~~~~~~~~r 207 (377)
+|+++|+++.|+.. .+++|||++|+.||.+|+.||||||||||||+|+|+..|++|.|.+||+ |.+..+ ...
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 58999999999754 6999999999999999999999999999999999999999999999999 555433 234
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++||||||+..+| .+||.+||+||.+.. ..+.++.+.++.+++..+-+++| .+||||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP---------~QLSGGQrQRVA 147 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP---------AQLSGGQRQRVA 147 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc---------hhcChHHHHHHH
Confidence 6799999999998 799999999996321 22345566677777777777777 679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||||+.+|++||||||+++||..-+.++...|+++.++ -|.|+++||||.+++.. ||||++|++|+|...|+++|+
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~--~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR--LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh--hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999999764 48999999999999865 999999999999999999999
Q ss_pred hhcC
Q 017091 359 LHKG 362 (377)
Q Consensus 359 ~~~~ 362 (377)
+...
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 8754
No 65
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.6e-51 Score=459.81 Aligned_cols=341 Identities=23% Similarity=0.346 Sum_probs=272.2
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
|++||.|+.|+.+.+++++.-++..+...+..... .+......+ ....+.++.+++|.+..+ ++++.+++++.++..
T Consensus 270 ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~l 346 (1490)
T TIGR01271 270 IQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR-YFYSSAFFF-SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIV 346 (1490)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 68999999999998888776655444433332221 111111111 222344556667777654 688998888888888
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCC----------------
Q 017091 82 LIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSR---------------- 144 (377)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~---------------- 144 (377)
+..|+. .+...+..+.++.++++||.+++..++..... . ......++++|++|.|+..
T Consensus 347 L~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 421 (1490)
T TIGR01271 347 LRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARK 421 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---c--cCCCCceEEecceEecCCccccccccccccccccc
Confidence 888874 68888899999999999999999765432111 0 0011248889999988521
Q ss_pred ---------------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 145 ---------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 145 ---------------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 422 ~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~ 488 (1490)
T TIGR01271 422 QPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------R 488 (1490)
T ss_pred cccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------E
Confidence 013589999999999999999999999999999999999999999999988 3
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~ 287 (377)
|+|++|+|++|++||+|||.|+.+ ...++..++++.+++.+.++.+|.|+.|.++. .+|||||||||+||||++.+
T Consensus 489 iayv~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~ 566 (1490)
T TIGR01271 489 ISFSPQTSWIMPGTIKDNIIFGLS--YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKD 566 (1490)
T ss_pred EEEEeCCCccCCccHHHHHHhccc--cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999843 33445666777888999999999999998874 68999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHH-HHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 366 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~-l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 366 (377)
|+++|||||||+||+.+++.+.+. +..+. +++|+|+|||+++.+..||+|++|++|++++.|+++++...+..|.
T Consensus 567 ~~illLDep~saLD~~~~~~i~~~~l~~~~----~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~ 642 (1490)
T TIGR01271 567 ADLYLLDSPFTHLDVVTEKEIFESCLCKLM----SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFS 642 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHH
Confidence 999999999999999999999974 56553 4789999999999998899999999999999999999987766666
Q ss_pred HHH
Q 017091 367 KLV 369 (377)
Q Consensus 367 ~~~ 369 (377)
+.+
T Consensus 643 ~~~ 645 (1490)
T TIGR01271 643 SLL 645 (1490)
T ss_pred HHH
Confidence 555
No 66
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-52 Score=410.21 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=190.5
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||+++|++. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. ++.
T Consensus 2 ~~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 77 (356)
T PRK11650 2 AGLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRD 77 (356)
T ss_pred CEEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 358999999999422 3699999999999999999999999999999999999999999999999999876654 468
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.| .+|||||||||+||||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvalARA 148 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP---------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999999 58999999987431 112 234556777778877777766 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+.+++.+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR--LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999998653 48899999999998865 9999999999999999999998764
No 67
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-52 Score=388.86 Aligned_cols=220 Identities=30% Similarity=0.477 Sum_probs=182.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~ 208 (377)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999974 369999999999999999999999999999999999999999999999999876553 45678
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCC--CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
.|+|+||++.+|. .|++||+.++... ....+ .+.++++..++.++.++.+ .+|||||||||+||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~ia 148 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP---------AELSGGMKKRVALA 148 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 8999999998885 6999999875211 11221 2233344444433333222 57999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||+||||++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE--LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999999999998642 37899999999999875 99999999999999999999876
Q ss_pred cCHHH
Q 017091 361 KGRLY 365 (377)
Q Consensus 361 ~~~~~ 365 (377)
....|
T Consensus 227 ~~~~~ 231 (235)
T cd03261 227 SDDPL 231 (235)
T ss_pred CCChh
Confidence 54444
No 68
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-52 Score=407.63 Aligned_cols=218 Identities=31% Similarity=0.499 Sum_probs=189.3
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
|..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++
T Consensus 4 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r 78 (351)
T PRK11432 4 KNFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QR 78 (351)
T ss_pred CcEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HC
Confidence 346999999999974 3599999999999999999999999999999999999999999999999999876543 57
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+||||||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.| .+|||||||||+|||
T Consensus 79 ~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~---------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV---------DQISGGQQQRVALAR 149 (351)
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence 899999999999 57999999987421 111 234455666666666665555 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||||+||+.+++.+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++.+
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ--FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999998653 47899999999999865 999999999999999999999865
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 228 p 228 (351)
T PRK11432 228 P 228 (351)
T ss_pred C
Confidence 3
No 69
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-51 Score=381.83 Aligned_cols=230 Identities=53% Similarity=0.844 Sum_probs=201.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999753 236999999999999999999999999999999999999999999999999987666666778899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+||++.+|+.|++||+.++.. ......+....+..++.++++.+|.++.+..+ ...||||||||++|||||+.+|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999998899999988643 22344555666777888999988877766554 46899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
++||||||++||+.+++.+.+.|+++. ++.|||++||+++.+..||++++|++|++++.|+++++......|+.
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM----KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK 232 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhh
Confidence 999999999999999999999999884 36899999999999877999999999999999999998877665544
No 70
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.7e-51 Score=382.00 Aligned_cols=233 Identities=57% Similarity=0.917 Sum_probs=201.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|+++.|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997532246999999999999999999999999999999999999999999999999987666666677899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|++|++.+++.|++||+.++.. ....++....++..++.++++.+|.++++... ..+||||||||++|||||+.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998888899999988643 22344455566677888888888877766554 36899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+|||||||++||+.+++.+.+.|++++ +|+|||++||+++.+..||++++|++|++++.|+.+++......+++++
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~----~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM----KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999999884 3789999999999987899999999999999999999887766555554
No 71
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-51 Score=391.89 Aligned_cols=221 Identities=35% Similarity=0.545 Sum_probs=190.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742223599999999999999999999999999999999999999999999999999776666778889
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~--l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||+||++. ++..||+|||.++... ..+ .+.+.++++.+++.++.+..| .+||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999983 4578999999876321 112 234555667777766666555 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++|||||||++||+.+++.+.+.|++++++ .|+|||++|||++.+..||+|++|++|++++.|+++++....
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99999999999999999999999999999998642 388999999999998779999999999999999999887654
No 72
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-51 Score=379.79 Aligned_cols=233 Identities=51% Similarity=0.785 Sum_probs=205.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999642 35999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|++|++.+|+.|++||+.++.. ....+.+...++..++.++++.+|.++++... ...||||||||++|||||+.+|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988643 23445556667777888888998888877654 36899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+|||||||++||+.+...+.+.|.+++ + |+|||++||+++.+..||++++|++|++++.|+.+++......|+.++
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~---~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVS---K-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc---C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 999999999999999999999999884 2 789999999999997799999999999999999999888776676665
Q ss_pred HH
Q 017091 370 KR 371 (377)
Q Consensus 370 ~~ 371 (377)
.+
T Consensus 234 ~~ 235 (236)
T cd03253 234 KA 235 (236)
T ss_pred hc
Confidence 43
No 73
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.3e-52 Score=404.47 Aligned_cols=217 Identities=29% Similarity=0.455 Sum_probs=187.4
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ 77 (353)
T TIGR03265 3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRD 77 (353)
T ss_pred cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999974 3599999999999999999999999999999999999999999999999999876553 567
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.| .+|||||||||+||||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999999 58999999986421 111 223445555555555555444 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR--LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999998653 47899999999999865 9999999999999999999998753
No 74
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-51 Score=376.95 Aligned_cols=224 Identities=48% Similarity=0.794 Sum_probs=198.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 48999999999742 3599999999999999999999999999999999999999999999999998776666778889
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+|+||++.+|..|++||+.+... .....++..+++..++.++++.+|.++.+... ..+|||||||||+|||||+.+|
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999888899999988633 23345566677778899999998877776554 3689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+++||||||++||+.+++.+.+.|.++. +++|||++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM----KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999999883 37899999999999877999999999999999998887654
No 75
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-51 Score=400.00 Aligned_cols=219 Identities=34% Similarity=0.525 Sum_probs=184.5
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 207 (377)
|+++||+|+|+.+. .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 246999999999999999999999999999999999999999999999999998766543 46
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
++|||+||++.+| ..|++||+.++.. ..... +++.+.++..++.++.++.| .+||||||||++||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 7899999999988 5899999987521 11111 22334455555544444333 67999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRE--LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998642 47899999999999875 99999999999999999999976
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 76
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.6e-51 Score=405.27 Aligned_cols=223 Identities=24% Similarity=0.418 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5899999999975 3699999999999999999999999999999999999999999999999999888878888899
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
||++|++.++ .+|++||+.++.... ...+.+.++++..++.++.++.+ .+||||||||++|
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL 150 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 9999999874 899999998864211 11233455666666665554433 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+++|++|||||||++||+.++.+++++|+++.+ .|.|||++|||++.+.. |||+++|++|++++.|++++++
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~---~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999964 37899999999999965 9999999999999999999988
Q ss_pred hcCHHHHHHH
Q 017091 360 HKGRLYAKLV 369 (377)
Q Consensus 360 ~~~~~~~~~~ 369 (377)
... .+.+.|
T Consensus 228 ~~~-~l~~~~ 236 (402)
T PRK09536 228 TAD-TLRAAF 236 (402)
T ss_pred CcH-HHHHHh
Confidence 653 344444
No 77
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-51 Score=378.98 Aligned_cols=226 Identities=34% Similarity=0.548 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 2 NEIEFKEVSYSSFGK---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred ceEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence 458999999999743 59999999999999999999999999999999999999999999999999877666667788
Q ss_pred eEEEccCCcCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
++|+||++.+|+.|++||+.++... ....+++.+.++..++. ++.++. ..+||||||||++|||||+.+
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRD---------VKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCC---------cccCCHHHHHHHHHHHHHhcC
Confidence 9999999999888999999875321 11122334444444442 222222 367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC-HHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG-RLY 365 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~-~~~ 365 (377)
|++|||||||++||+.+++.+.+.|+++.++ .|.|||++|||++.+.. ||+|++|++|++++.|++++++... ..|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 227 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNK--MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEV 227 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHH
Confidence 9999999999999999999999999998642 37899999999999875 9999999999999999999987643 234
Q ss_pred HHHH
Q 017091 366 AKLV 369 (377)
Q Consensus 366 ~~~~ 369 (377)
...+
T Consensus 228 ~~~~ 231 (241)
T PRK14250 228 TKLF 231 (241)
T ss_pred HHHH
Confidence 4433
No 78
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.6e-50 Score=379.94 Aligned_cols=237 Identities=32% Similarity=0.534 Sum_probs=208.0
Q ss_pred ccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh
Q 017091 128 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 128 ~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
..+.|+++|++++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45579999999999753 24699999999999999999999999999999999999999999999999999877777778
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHc
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~ 285 (377)
+.|+|++|++.+|+.|++||+.... ....+.+..+++..++.++++.+|.++++... ..+||||||||++|||||+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 8999999999999889999987542 12344566677778889999999888888765 3689999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRL 364 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~ 364 (377)
.+|++|||||||++||+.+++.+.+.++++. ++.|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 248 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAF----ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGV 248 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhc----CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchH
Confidence 9999999999999999999999999998863 37899999999999988999999999999999999999865 456
Q ss_pred HHHHHHH
Q 017091 365 YAKLVKR 371 (377)
Q Consensus 365 ~~~~~~~ 371 (377)
|++++..
T Consensus 249 ~~~~~~~ 255 (257)
T cd03288 249 FASLVRT 255 (257)
T ss_pred HHHHHhc
Confidence 7777654
No 79
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-51 Score=389.08 Aligned_cols=220 Identities=31% Similarity=0.524 Sum_probs=181.6
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC--HHHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~ 206 (377)
.|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999997421 136999999999999999999999999999999999999999999999999987643 3466
Q ss_pred hcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHH
Q 017091 207 REKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 207 r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~----~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
+++|||+||++ .+|..|++||+.++... ....+ .+.++++.+++. ++.+. ....||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDK---------SPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccC---------CcccCCHHHHHH
Confidence 78899999998 46788999999875311 12222 223334444432 12221 236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||++|||++.+. .||||++|++|++++.|+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998642 4789999999999986 59999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++++.
T Consensus 231 ~~~~~ 235 (287)
T PRK13637 231 EVFKE 235 (287)
T ss_pred HHHhC
Confidence 98653
No 80
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-51 Score=393.98 Aligned_cols=224 Identities=29% Similarity=0.447 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC-------
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------- 201 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~------- 201 (377)
.|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 13699999999999999999999999999999999999999999999999988642
Q ss_pred ---------CHHHHhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCC
Q 017091 202 ---------DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD 268 (377)
Q Consensus 202 ---------~~~~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 268 (377)
....+|++|+||||++ .+|..|++||+.++.. .....++... .+.++++.+.... .....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHcCCChhHhcCCcc
Confidence 2346788899999998 5788899999988631 1122222111 1223344433210 1112236
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G 347 (377)
+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.++++ +|+|||+||||++.+. .||+|++|++|
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~---~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA---NNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 8999999999999999999999999999999999999999999998863 4789999999999885 59999999999
Q ss_pred EEEEEcChHHHhhcC
Q 017091 348 RIIEVGNHAELLHKG 362 (377)
Q Consensus 348 ~i~~~g~~~~l~~~~ 362 (377)
++++.|++++++...
T Consensus 253 ~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 253 KILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEEeCCHHHHhcCH
Confidence 999999999886543
No 81
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.5e-51 Score=399.70 Aligned_cols=216 Identities=30% Similarity=0.487 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .++.|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 4899999999975 369999999999999999999999999999999999999999999999999876543 35679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-----CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK-----DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|+||++.+| .+|++||+.++... ... .+++.++++..++.++.++.| .+|||||||||+|
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval 147 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL 147 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 9999999998 57999999986421 111 123445566666655555544 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998653 47899999999999865 9999999999999999999998
Q ss_pred hcC
Q 017091 360 HKG 362 (377)
Q Consensus 360 ~~~ 362 (377)
.+.
T Consensus 226 ~~p 228 (353)
T PRK10851 226 REP 228 (353)
T ss_pred hCc
Confidence 753
No 82
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.2e-51 Score=402.18 Aligned_cols=216 Identities=31% Similarity=0.484 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.+
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999974 3599999999999999999999999999999999999999999999999999776553 4679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|||||++.+| .+||+|||.|+... ... .+++.++++..++.+++++.| .+|||||||||+|||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p---------~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---------HQLSGGQQQRVAIARAV 159 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999999 67999999987421 111 234455677777777777766 67999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++.+.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK--LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999998753 48899999999999865 9999999999999999999998764
No 83
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.3e-51 Score=375.66 Aligned_cols=205 Identities=35% Similarity=0.561 Sum_probs=172.9
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 208 (377)
|+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999643 13699999999999999999999999999999999999999999999999998665432 3567
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|+||++.+| ..|++||+.++... .. ..+++.++++..++.++.+..| .+||||||||++|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 899999999888 47999999864210 11 1233455566666655555444 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||+||||++.+.. ||++++|++|++
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR---RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998853 37899999999999875 999999999975
No 84
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-51 Score=388.78 Aligned_cols=219 Identities=25% Similarity=0.463 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCCC--CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----CCHH
Q 017091 131 HVQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~ 204 (377)
+|+++||+|+|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 3899999999974211 259999999999999999999999999999999999999999999999999853 2345
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~----~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
.+++.+|||||+| .+|..|+.||+.++... ....+ ++.++++.+++. ++.++. ...|||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~~LSgGqkq 151 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS---------PFELSGGQMR 151 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCC---------cccCCHHHHH
Confidence 6778899999998 67888999999886321 11222 223334444442 222222 3679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++.+. .||||++|++|++++.|++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ---SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999864 3789999999999986 4999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
++++..
T Consensus 229 ~~~~~~ 234 (288)
T PRK13643 229 SDVFQE 234 (288)
T ss_pred HHHHcC
Confidence 998754
No 85
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-51 Score=379.24 Aligned_cols=215 Identities=35% Similarity=0.543 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC---HHHHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~r~ 208 (377)
++++||+++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999751 36999999999999999999999999999999999999999999999999987665 345677
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCCC----------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD----------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~----------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
.++|+||++.+|. .|++||+.++.... .. .+++.++++..++.+..+. ...+|||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~ 149 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ---------RADQLSGGQ 149 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC---------CcccCCHHH
Confidence 8999999998874 79999998642110 00 1122333444444333222 236799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+.. ||++++|++|++++.|
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE--EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999998642 37899999999999974 9999999999999999
Q ss_pred ChHHHh
Q 017091 354 NHAELL 359 (377)
Q Consensus 354 ~~~~l~ 359 (377)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 998864
No 86
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.8e-51 Score=392.95 Aligned_cols=215 Identities=27% Similarity=0.440 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+ ...+++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999974 36999999999999999999999999999999999999999999999999987643 3567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|++||+.+... ...... ++.++++.+++.+..++. ...||||||||++|||||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAK---------VGELSGGMKRRLTLARAL 153 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence 9999999988 5899999975211 111211 222333333333322221 257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++++.. ||||++|++|++++.|+++++...
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999863 48899999999999976 999999999999999999998643
No 87
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.2e-49 Score=446.82 Aligned_cols=347 Identities=21% Similarity=0.282 Sum_probs=269.8
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
|++||.++.|+.+.+++++.-++..+...+......+.. +...... ..+.++.+++|.+..+.+|++.+++++.++..
T Consensus 435 Ir~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~-~~~~~~p-~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~ 512 (1560)
T PTZ00243 435 IRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATS-FVNNATP-TLMIAVVFTVYYLLGHELTPEVVFPTIALLGV 512 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 689999999999999998866554444333322222221 1111111 12233456778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----c--c--------cc--c---------------ccc-----
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ----F--L--------SE--G---------------VKL----- 125 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~----~--~--------~~--~---------------~~~----- 125 (377)
+..|+..+...+..+.++.++++||.++++.++... . . .. . ...
T Consensus 513 L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1560)
T PTZ00243 513 LRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPK 592 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999997653100 0 0 00 0 000
Q ss_pred ----------------------ccccccEEEEEEEEEcCCC-------------------------------------CC
Q 017091 126 ----------------------QRLMGHVQFVNISFHYPSR-------------------------------------PT 146 (377)
Q Consensus 126 ----------------------~~~~~~i~~~~v~~~y~~~-------------------------------------~~ 146 (377)
....+.+.++|++++++.. .+
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1560)
T PTZ00243 593 VKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEP 672 (1560)
T ss_pred ccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 0001135677776653210 12
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ++|||+||+|.+|++|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHH
Confidence 458999999999999999999999999999999999999999999862 4699999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
||.++.+ ...++..++++.+++++.++.+|.|+++.++. .+|||||||||+||||++.+|+++|||||||+||+.+
T Consensus 740 nI~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 740 NILFFDE--EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred HHHcCCh--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 9998743 23445667778888999999999999988763 6899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 305 EHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 305 ~~~i~~~l-~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
.+.+.+.+ ... .+|+|+|+|||+++.+..||+|++|++|++++.|+++++++.. .|.++..
T Consensus 818 ~~~i~~~~~~~~----~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~~-~~~~~~~ 879 (1560)
T PTZ00243 818 GERVVEECFLGA----LAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS-LYATLAA 879 (1560)
T ss_pred HHHHHHHHHHHh----hCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhCh-HHHHHHH
Confidence 88887643 322 1478999999999999889999999999999999999998753 4666554
No 88
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-51 Score=385.43 Aligned_cols=214 Identities=29% Similarity=0.506 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3699999999999999999999999999999999999999999999999999877767777889
Q ss_pred EEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~--~l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||+||++ .++..|+.||+.++... ... .+++..+++.+++.++.++.| .+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgG~~qrv~lara 152 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP---------YHLSYGQKKRVAIAGV 152 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 9999998 46788999999875311 111 233455666667666655555 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHH
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l 358 (377)
|+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++.+. .||||++|++|++++.|+++++
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN---QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999864 3789999999999985 5999999999999999998764
No 89
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1e-50 Score=377.79 Aligned_cols=215 Identities=34% Similarity=0.497 Sum_probs=179.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~ 208 (377)
|+++||+++|+.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 7899999999721 369999999999999999999999999999999999999999999999999876543 23577
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
.++|+||++.+| ..|++||+.++.... ...+++.++++..++.+.++..+ .+|||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~ 150 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---------DQLSGGQ 150 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHH
Confidence 899999999887 579999998753210 00122333444455544433322 5799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE--DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998542 37899999999999865 9999999999999999
Q ss_pred ChHHHh
Q 017091 354 NHAELL 359 (377)
Q Consensus 354 ~~~~l~ 359 (377)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 998863
No 90
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-51 Score=377.23 Aligned_cols=215 Identities=32% Similarity=0.502 Sum_probs=180.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. .++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 4899999999975 369999999999999999999999999999999999999999999999999865443 25679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC-C----CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD-V----KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~-~----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|++|++.+| ..|+.||+.++.... . .. +.+.++++..++.++.++.+ .+||||||||++|
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l 147 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL 147 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 9999999888 579999998753211 0 11 12334455555544444333 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|.+++++ .|+|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE--LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999999998642 37899999999998865 9999999999999999999987
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
+.
T Consensus 226 ~~ 227 (239)
T cd03296 226 DH 227 (239)
T ss_pred cC
Confidence 54
No 91
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-50 Score=370.50 Aligned_cols=217 Identities=38% Similarity=0.616 Sum_probs=194.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 48999999999753 24699999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+|+||++.+++.|++||+.+.. ....+++.++++..++.+++..+|.++.+... ...||||||||++|||||+.+|
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999988889999998642 23456677788888999999999989888765 3689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
+++||||||++||+.+++.+.+.|+++. ++.|||++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAF----KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999874 3579999999999998899999999999998775
No 92
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.7e-51 Score=376.42 Aligned_cols=212 Identities=33% Similarity=0.559 Sum_probs=177.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC-----CCCCCeEEECCEeCCCCC--HH
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYIDGFPLTDLD--IR 204 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-----~p~~G~I~i~g~~i~~~~--~~ 204 (377)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5789999999753 6999999999999999999999999999999999999 999999999999987655 45
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCCC-C-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-V-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
.++++++|+||++.+|..|++||+.++.... . . .+++.++++..++.+..+..+ .+.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL-------HALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC-------CcccCCHHHHHHH
Confidence 5677899999999888889999998753211 1 1 123344455555544433321 0267999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.++..+.+.|+++++ + +|||++|||++.+.. ||++++|++|++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK---E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999999853 3 799999999999865 99999999999999998765
No 93
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-51 Score=388.28 Aligned_cols=221 Identities=28% Similarity=0.449 Sum_probs=181.6
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----CCHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~ 204 (377)
.++++||+|+|++.. ..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997421 1369999999999999999999999999999999999999999999999999853 2344
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~----~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
.+++.|||+||++ .+|+.|++||+.++... ....+ .+.++++.+++. .+.+. ....|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~~LSgGq~q 152 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR---------SPFELSGGQMR 152 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhC---------CcccCCHHHHH
Confidence 5677899999997 57788999999876311 11222 223334444442 22222 23679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||+||||++.+.. ||||++|++|++++.|++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~--~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE--KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998642 47899999999999865 999999999999999999
Q ss_pred HHHhhcC
Q 017091 356 AELLHKG 362 (377)
Q Consensus 356 ~~l~~~~ 362 (377)
+++++..
T Consensus 231 ~~~~~~~ 237 (290)
T PRK13634 231 REIFADP 237 (290)
T ss_pred HHHhcCH
Confidence 9886543
No 94
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-51 Score=387.21 Aligned_cols=223 Identities=30% Similarity=0.554 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC----CHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~ 204 (377)
.++++||+|+|+++. .+++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996421 13699999999999999999999999999999999999999999999999998643 234
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCccc---ccCCCCCChHHHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYET---LVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~LSgGq~QRv 278 (377)
.++++|||+||+| .+|..|+.||+.++... .....+... .+.++++.+ |+.+ .....+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6778899999997 57778999999886311 112222111 122333332 2221 112368999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.++..+.+.|++++++ .|.|||+|||+++.+. .||||++|++|++++.|++++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD--ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998642 4789999999999986 499999999999999999999
Q ss_pred HhhcC
Q 017091 358 LLHKG 362 (377)
Q Consensus 358 l~~~~ 362 (377)
++...
T Consensus 233 ~~~~~ 237 (286)
T PRK13646 233 LFKDK 237 (286)
T ss_pred HHhCH
Confidence 87653
No 95
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.4e-51 Score=399.14 Aligned_cols=217 Identities=28% Similarity=0.448 Sum_probs=186.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC--CeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~--G~I~i~g~~i~~~~~~~~r~ 208 (377)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred EEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 5899999999974 359999999999999999999999999999999999999999 999999999876554 356
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.||||||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.| .+|||||||||+|||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP---------AQLSGGMQQRIAIAR 150 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh---------hhCCHHHHHHHHHHH
Confidence 799999999999 57999999986421 112 123444555666655555555 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||||+||+.++..+.+.|+++.++ ..|.|+|+||||++++.. ||+|++|++|++++.|++++++.+
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE-LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999998653 127899999999999865 999999999999999999999875
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 3
No 96
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-51 Score=358.64 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
++++.+++++|++. ..+++||||+++.||++||.|||||||||+||+|++++.|++|.|++||.|.... +...|++|
T Consensus 1 Ml~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKI 77 (245)
T ss_pred CeeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhc
Confidence 37899999999863 3599999999999999999999999999999999999999999999999998764 56678899
Q ss_pred EEEccCCcCc-cccHHHHHhcCC-----CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|.++-+..++ .+|++|||.|.. .....+.++.+..+..++.+.+++.- .++|.||||||+|||||
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv---------~~~S~G~kqkV~iARAl 148 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV---------GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH---------hhhchhhHHHHHHHHHH
Confidence 9999777777 799999998631 11222445566677777777776543 46999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+++|++++|||||||||..+...+.+.+.++++ .|++||++||.+++++. ||+|+++++|+++..|+++++...
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~---egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN---EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc---CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999999975 48999999999999985 999999999999999999988754
No 97
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=8.2e-51 Score=376.82 Aligned_cols=219 Identities=26% Similarity=0.460 Sum_probs=178.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 210 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999974 369999999999999999999999999999999999999999999999999877665443 5679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCC-C----------CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPKD-V----------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~~-~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
+|+||++.+|. .|++||+.++.... . ...+. ...+.++++.+...........+||||||||+
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERVGLADLADRPAGELSYGQQRRL 152 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHcCccchhhCChhhCCHHHHHHH
Confidence 99999998885 69999998753211 0 01110 11123344443221111112367999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|+|||++|||++.+.. ||++++|++|++++.|++++
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHH
Confidence 999999999999999999999999999999999999864 37899999999999865 99999999999999999988
Q ss_pred Hhhc
Q 017091 358 LLHK 361 (377)
Q Consensus 358 l~~~ 361 (377)
+...
T Consensus 230 ~~~~ 233 (236)
T cd03219 230 VRNN 233 (236)
T ss_pred hccC
Confidence 8653
No 98
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-50 Score=392.49 Aligned_cols=222 Identities=33% Similarity=0.523 Sum_probs=184.6
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--C
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 201 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~ 201 (377)
.+.|+++|++++|.+. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3469999999999643 2469999999999999999999999999999999999986 579999999999863 3
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHHH-----HHHHHHHcCHHHHHHhCCCCcccccC--CCCCChH
Q 017091 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNED-----IEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGG 273 (377)
Q Consensus 202 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgG 273 (377)
+...+|+.++|+||+|.+|++|++||+.|+... ...+++ +..+++.+++.+ ++++.++ +.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccCCHH
Confidence 345678899999999999999999999976321 122222 233344444322 1222222 3689999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 352 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~ 352 (377)
||||++||||++.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++.
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~----~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK----KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999885 35899999999999977 999999999999999
Q ss_pred cChHHHhhcC
Q 017091 353 GNHAELLHKG 362 (377)
Q Consensus 353 g~~~~l~~~~ 362 (377)
|++++++...
T Consensus 306 g~~~~l~~~~ 315 (329)
T PRK14257 306 GETKTIFIHP 315 (329)
T ss_pred CCHHHHhcCC
Confidence 9999998753
No 99
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-51 Score=399.47 Aligned_cols=215 Identities=31% Similarity=0.494 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 5899999999974 3599999999999999999999999999999999999999999999999998765543 4679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.+| ..|++||+.++... ... .+++.++++..++.++.++.| .+|||||||||+|||||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999988 57999999886321 111 123445556666655555444 67999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++..
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998643 37899999999998865 999999999999999999999765
No 100
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-50 Score=372.47 Aligned_cols=212 Identities=26% Similarity=0.427 Sum_probs=179.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999974 3699999999999999999999999999999999999999999999999987643 345667899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.++. .|++||+.++... ... .+++.+.++..++.++.+..+ .+||||||||++||||++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV 147 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999998874 7999999764210 111 223445566666655554443 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
.+|++|||||||++||+.+++.+.+.|.++.++ .|+|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE--FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998642 37899999999999875 999999999999999987764
No 101
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-50 Score=383.58 Aligned_cols=220 Identities=35% Similarity=0.570 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++||++.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999742 24699999999999999999999999999999999999999999999999999877666677889
Q ss_pred EEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~--~l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++ .++..|+.||+.++... ... .+++..+++.+++.++++..| ..||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~lara 154 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP---------HRLSGGQKQRVAIAGV 154 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 34578999999875311 112 123455666667766666655 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||++||+++.+..||+|++|++|++++.|+++++....
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999998642 378999999999998779999999999999999998887643
No 102
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-50 Score=382.48 Aligned_cols=220 Identities=29% Similarity=0.481 Sum_probs=187.0
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..++++||+++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 2 ~~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 2 HLIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred ceEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 358999999999642 359999999999999999999999999999999999999999999999999876666677888
Q ss_pred eEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~--l~~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
++|+||++. ++..|+.||+.++.. ..... +.+.++++..++.+++++.+ ..||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAG 150 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHH
Confidence 999999984 567899999986421 11222 23445566666655555544 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++|||||||++||+.+++.+.+.+++++++ .|.|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET--YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999998642 3789999999999986 5999999999999999999998764
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 229 ~ 229 (277)
T PRK13652 229 P 229 (277)
T ss_pred H
Confidence 3
No 103
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.9e-50 Score=368.45 Aligned_cols=217 Identities=45% Similarity=0.713 Sum_probs=190.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|+++.|++. .+++++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 48899999999743 24699999999999999999999999999999999999999999999999998766666667789
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+|++|++.+|..|+.||+.++.. ....+.+.+.++..++.+.++..|.++++... ..+||||||||++||||++.+|
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999888899999987632 22344566777888898999988888777654 3589999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
++|||||||++||+.++..+.+.|+++++ ++|||++||+++.+..||++++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLG----DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999998842 37999999999988679999999999998654
No 104
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.9e-50 Score=391.45 Aligned_cols=226 Identities=29% Similarity=0.455 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCC----------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC
Q 017091 131 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~----------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 200 (377)
.|+++||+++|+... ..++++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 599999999996311 2469999999999999999999999999999999999999999999999999987
Q ss_pred CCHH---HHhcceEEEccCC--cCc-cccHHHHHhcCCC---CCCCHH----HHHHHHHHcCH-HHHHHhCCCCcccccC
Q 017091 201 LDIR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCP---KDVKNE----DIEWAAKQAYV-HEFILSLPCGYETLVD 266 (377)
Q Consensus 201 ~~~~---~~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~---~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~~~~~ 266 (377)
.+.. .+|++|+||||++ .++ .+|+.||+.++.. ...+.+ .+.+.++.+++ .+..++.|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-------- 159 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-------- 159 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc--------
Confidence 7643 3567899999998 466 5899999975321 012222 23334445554 22333333
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe
Q 017091 267 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 345 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~ 345 (377)
.+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|++++++ .|.|+|+||||++.+.. ||+|++|+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 679999999999999999999999999999999999999999999998653 47899999999999976 99999999
Q ss_pred CCEEEEEcChHHHhhcC-HHHHH
Q 017091 346 DGRIIEVGNHAELLHKG-RLYAK 367 (377)
Q Consensus 346 ~G~i~~~g~~~~l~~~~-~~~~~ 367 (377)
+|+|++.|++++++.+. ..|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 99999999999998653 34554
No 105
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.5e-51 Score=398.95 Aligned_cols=208 Identities=38% Similarity=0.514 Sum_probs=181.6
Q ss_pred EcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEcc
Q 017091 140 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQ 215 (377)
Q Consensus 140 ~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q 215 (377)
.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ |+.|+||||
T Consensus 2 ~~~~---~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 2 KTGG---KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred ccCC---ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 4553 369999999999999999999999999999999999999999999999999998877666 678999999
Q ss_pred CCcCcc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 216 EPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 216 ~~~l~~-~tv~eni~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
++.+|+ +||+||+.++... .. ..+++.++++.+++..++++.| .+|||||||||+|||||+.+|+
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p---------~~LSGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP---------DELSGGMQQRVGLARALAAEPD 149 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999995 7999999875321 11 1234556677777777666666 6799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+||||||||+||+.+++.+++.+.+++++ .|+|||+||||++++.. ||+|++|++|++++.|++++++.+
T Consensus 150 iLLlDEP~saLD~~~r~~l~~~l~~l~~~--~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 150 ILLMDEAFSALDPLIRDSMQDELKKLQAT--LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999999999999998643 47899999999998755 999999999999999999999865
No 106
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-51 Score=371.79 Aligned_cols=206 Identities=35% Similarity=0.563 Sum_probs=172.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999974 369999999999999999999999999999999999999999999999999875432 356799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.++ ..|++||+.++... ... .+++.++++..++.++.++.+ .+||||||||++|||||+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA 146 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence 999999887 57999999864211 111 122344555555555444433 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|++|||||||++||+.++..+.+.|.++.++ .|+|||++|||++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRE--LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998642 37899999999999865 9999999999998764
No 107
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-50 Score=373.99 Aligned_cols=218 Identities=32% Similarity=0.499 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12699999999999999999999999999999999999999999999999998765543 346
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
+.++|+||++.+|. .|++||+.++.. .... .+.+.++++..++.+..+..+ .+||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence 78999999999885 799999976421 1111 123344555555554444433 57999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|+++||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRE--LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998642 37899999999999865 99999999999999999888764
No 108
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-50 Score=386.38 Aligned_cols=217 Identities=31% Similarity=0.528 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++||+++|+. ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+...- ..+.+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999983 13699999999999999999999999999999999999999999999999998654 56778899
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|++||+.|... .....+++.+.++.+++.+..+ .....||+|||||++||+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~---------~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN---------KKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhC---------cchhhcCHHHHHHHHHHHHH
Confidence 9999999987 6899999976321 1112345555666666554221 11257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+||||.++..+.+.|++++++ .++||+++||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999764 23899999999999987 999999999999999999987543
No 109
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-50 Score=398.19 Aligned_cols=217 Identities=27% Similarity=0.473 Sum_probs=185.9
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++ .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999974 369999999999999999999999999999999999999999999999999876654 3678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||.||+.|+... .... +++.+.++..++.++.++.| .+|||||||||+||||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~---------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP---------HQLSGGQRQRVALARS 163 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999999 57999999986421 1122 23344455555555544444 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+..+..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++.+.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999888653 47899999999999865 9999999999999999999998753
No 110
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-50 Score=387.53 Aligned_cols=219 Identities=27% Similarity=0.449 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--------
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-------- 200 (377)
.|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 489999999997531 1259999999999999999999999999999999999999999999999876531
Q ss_pred ----------------CCHHHHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHH-HHHHh
Q 017091 201 ----------------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVH-EFILS 256 (377)
Q Consensus 201 ----------------~~~~~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~-~~~~~ 256 (377)
.....+++.||||||+| .+|..||+|||.++... .... +++.++++.+++. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 12345678899999986 56778999999886321 1222 2234445555553 33333
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 257 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 257 ~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
.| .+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||+||||++.+.
T Consensus 162 ~~---------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 162 SP---------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK---QGKTIILVTHDLDNVL 229 (305)
T ss_pred Ch---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeeCHHHHH
Confidence 33 67999999999999999999999999999999999999999999999863 4889999999999875
Q ss_pred -hcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 337 -AVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 337 -~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.||||++|++|++++.|++++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhcC
Confidence 5999999999999999999998765
No 111
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.8e-50 Score=369.79 Aligned_cols=214 Identities=29% Similarity=0.459 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 210 (377)
|+++||+++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999974 369999999999999999999999999999999999999999999999999877665443 5679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCCCC---HHHHHHHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPKDVK---NEDIEWAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
+|+||++.+|. .|++||+.++...... .+.+...++.. ++.+..+. ...+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQ---------LAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhC---------chhhCCHHHHHHHHHHHHHh
Confidence 99999998885 6999999875321111 11122222222 12222221 12579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
.+|++|||||||++||+.++..+.+.|+++.+ .|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD---EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999998863 37899999999999865 99999999999999999887653
No 112
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-50 Score=373.00 Aligned_cols=213 Identities=31% Similarity=0.436 Sum_probs=176.0
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---H
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 206 (377)
.++++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 136999999999999999999999999999999999999999999999999998766533 2
Q ss_pred -hcceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 -REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 -r~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++.++|+||++.+|+ .|++||+.++.. .... .+++.++++..++.+..++.+ .+||||||||++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP---------SELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHH
Confidence 367999999998884 699999976321 0111 122334444444444333322 579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
||||++.+|++|||||||++||+.++..+.+.|++++++ .|+|||++||+++.+..+|++++|++|++++.++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL--QGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998642 4789999999999998888999999999998775
No 113
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-50 Score=382.70 Aligned_cols=218 Identities=28% Similarity=0.496 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~ 208 (377)
.|+++||+++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 48999999999632 36999999999999999999999999999999999999999999999999984 233456778
Q ss_pred ceEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
.+||+||++ .+++.|++||+.++... .... +.+..+++..++.++.+..+ .+||||||||++||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrl~la 153 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 153 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc---------ccCCHHHHHHHHHH
Confidence 899999998 45688999999874211 1121 23444556666655444333 67999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+. .|||+++|++|++++.|+++++..
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998642 3789999999999987 499999999999999999998876
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 114
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.4e-50 Score=369.87 Aligned_cols=212 Identities=26% Similarity=0.508 Sum_probs=177.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999752 14699999999999999999999999999999999999999999999999998653 345677899
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|++|++.++ ..|++||+.+... ..... +++.++++..++.+..+..+ .+||||||||++|||||+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA---------RTLSGGMKRKLSLAIALI 149 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh---------hhCCHHHHHHHHHHHHHh
Confidence 999999888 6899999976421 11111 22334455555544443322 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
.+|++|||||||++||+.+++.+.+.|+++++ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRK----GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999998852 4799999999999865 999999999999999988764
No 115
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.5e-50 Score=391.79 Aligned_cols=215 Identities=27% Similarity=0.457 Sum_probs=179.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999975 36999999999999999999999999999999999999999999999999987543 4567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|+.||+.+... ...... .+.++++.+++.+..++ ...+||||||||++|||||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~---------~~~~LS~G~kqrv~lA~aL 187 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADA---------RVSDLSGGMKRRLTLARAL 187 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCC---------ChhhCCHHHHHHHHHHHHH
Confidence 9999999887 6899999975211 111111 12222333333222221 1257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~---~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 48899999999999975 999999999999999999998653
No 116
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.9e-50 Score=371.89 Aligned_cols=215 Identities=33% Similarity=0.506 Sum_probs=178.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEE
Confidence 789999999974 3699999999999999999999999999999999999999999999999998765543 345799
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.++ ..|++||+.++.. ..... +.+.+.++..++.+.++. ...+||||||||++|||||+
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrl~laral~ 148 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADD---------KVRELNGGHRRRVEIARALL 148 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcC---------ChhhCCHHHHHHHHHHHHHh
Confidence 999999875 7899999976421 11111 122233333333332222 12579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.+|+++||||||++||+.+++.+.+.|+++.++ .|.|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRD--QGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999998642 47899999999999877999999999999999999988765
No 117
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.5e-50 Score=366.70 Aligned_cols=205 Identities=26% Similarity=0.439 Sum_probs=176.9
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999987653 44567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+||++.++ ..|++||+.++.. .....+++.++++..++.+..++.+ ..|||||||||+||||++.+|+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 6899999976421 1223445666777777766655544 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
+|||||||++||+.+++.+.+.|+++++ .|+|+|++|||++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRD---QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998864 37899999999999865 9999999999998764
No 118
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.9e-50 Score=385.85 Aligned_cols=215 Identities=29% Similarity=0.456 Sum_probs=179.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 3699999999999999999999999999999999999999999999999998653 34567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|++||+.+... ...... .+.++++..++.+..+.. ...||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVR---------VALLSGGMKRRLTLARAL 150 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence 9999999887 5899999974211 111221 122333444443333222 257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47899999999999975 999999999999999999998653
No 119
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.2e-50 Score=366.34 Aligned_cols=201 Identities=33% Similarity=0.545 Sum_probs=170.9
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999752 369999999999999999999999999999999999999999999999998753 345678999
Q ss_pred EccCCc--CccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 213 VGQEPQ--LLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 213 v~Q~~~--l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
+||++. ++..|++||+.++... ....+++.++++..++.++.++.| ..||||||||++|||||+.+|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP---------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc---------hhCCHHHHHHHHHHHHHHhCCC
Confidence 999973 5678999999875321 112234556666666665555444 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 350 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~ 350 (377)
+|||||||++||+.+++.+.+.|+++++ .|+|+|++||+++.+.. ||++++|++|+++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAA---QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999863 37899999999999875 9999999999974
No 120
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-50 Score=378.92 Aligned_cols=221 Identities=34% Similarity=0.532 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743224599999999999999999999999999999999999999999999999998766666778889
Q ss_pred EEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~--l~~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++. ++..|+.||+.++.. ..... +.+..+++.+++.++.+..+ ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999984 457899999986521 11122 22345556666665555443 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|||++||+++.+..||+|++|++|++++.|++++++...
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK--YQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99999999999999999999999999999998642 378999999999998779999999999999999999987643
No 121
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6.1e-50 Score=370.09 Aligned_cols=215 Identities=26% Similarity=0.476 Sum_probs=178.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 210 (377)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999974 36999999999999999999999999999999999999999999999999987665544 34679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+|+||++.+|. .|++||+.++... .... +.+...++..++.+..+.. ..+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~al 148 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK---------ASSLSGGERRRVEIARAL 148 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHH
Confidence 99999998885 6999999864211 1111 1222333333433333222 267999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||++||+.+++.+.+.|+++.+ .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD---RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 999999999999999999999999999998864 37899999999998865 999999999999999999888653
No 122
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-50 Score=374.03 Aligned_cols=217 Identities=31% Similarity=0.511 Sum_probs=179.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999752 35999999999999999999999999999999999999999999999999987766666778899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHH--HHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHE--FILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
|+||++.+| ..|++||+.++... .... +.+.++++..++.. +.++ ...+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADR---------YPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhc---------ChhhCCHHHHHHHHHHHH
Confidence 999999888 57999999764211 1111 12222333333321 2221 236799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE--LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999998642 37899999999998865 999999999999999999988654
No 123
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=6.5e-50 Score=378.13 Aligned_cols=226 Identities=22% Similarity=0.361 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5999999999964 3699999999999999999999999999999999999999999999999998765432 346
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.++|+||++.+|. .|+.||+.++... .... ..+...++..++.+..+.. ..+||||||||++|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGq~qrv~l 154 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM---------PSELSGGMARRAAL 154 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHH
Confidence 77999999998885 6999999764211 1111 1222334444444333332 26799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++|||++.+.. ||++++|++|++++.|++++++
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA--LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998642 37899999999999876 9999999999999999999987
Q ss_pred hcC-HHHHHHHH
Q 017091 360 HKG-RLYAKLVK 370 (377)
Q Consensus 360 ~~~-~~~~~~~~ 370 (377)
+.. ..+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 643 33444443
No 124
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-49 Score=369.92 Aligned_cols=216 Identities=26% Similarity=0.450 Sum_probs=178.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 5899999999974 36999999999999999999999999999999999999999999999999987766543 5678
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCCC---HHHHHHHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVK---NEDIEWAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
++|++|++.+|. .|+.||+.++...... .+.+.++++.. ++.+..+. ....||||||||++|||||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQ---------RAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhC---------chhhCCHHHHHHHHHHHHH
Confidence 999999998885 6999999875321111 11122222222 12222111 1257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||++||+.+++.+.+.|+++.+ +|+|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE---QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999864 37899999999998765 999999999999999999998754
No 125
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-50 Score=381.44 Aligned_cols=219 Identities=28% Similarity=0.481 Sum_probs=179.5
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC----CHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~ 204 (377)
.|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999997421 13699999999999999999999999999999999999999999999999998642 234
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
..++.|+|+||++ .+|..|+.||+.++.. .....+ .+.++++.+++. ++.++. ..+|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~~LSgGq~q 152 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS---------PFELSGGQMR 152 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC---------cccCCHHHHH
Confidence 5667899999998 4667899999986421 111221 223333334432 222222 3679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++.+.. ||+|++|++|++++.|++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK---AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999853 48899999999999865 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++...
T Consensus 230 ~~~~~~ 235 (287)
T PRK13641 230 KEIFSD 235 (287)
T ss_pred HHHhcC
Confidence 988654
No 126
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-50 Score=376.75 Aligned_cols=224 Identities=30% Similarity=0.446 Sum_probs=188.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999974 3699999999999999999999999999999999999999999999999998776666777889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|+||++.++ ..|+.||+.++.... ...+++..+++.+++.++++..+ .+||||||||++|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV---------DSLSGGERQRAWI 158 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCCHHHHHHHHH
Confidence 9999998766 579999998753110 01223455566666665555444 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|.++.+. .|.|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999998642 37899999999999865 9999999999999999998886
Q ss_pred hcCHHHHHHH
Q 017091 360 HKGRLYAKLV 369 (377)
Q Consensus 360 ~~~~~~~~~~ 369 (377)
.. ..+..++
T Consensus 237 ~~-~~~~~~~ 245 (265)
T PRK10575 237 RG-ETLEQIY 245 (265)
T ss_pred CH-HHHHHHh
Confidence 53 2344444
No 127
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-50 Score=377.56 Aligned_cols=220 Identities=34% Similarity=0.598 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 24699999999999999999999999999999999999999999999999998766666778889
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~--l~~~tv~eni~~~~~~-~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++. ++..|++||+.++... ....+ .+.+.++..++.++++..+ .+||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999983 4478999999875211 11222 2344556666666555544 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++|||||||++||+.+++.+.+.|+++.++ .++|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT--RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999998642 258999999999988779999999999999999998887643
No 128
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.4e-50 Score=369.38 Aligned_cols=207 Identities=38% Similarity=0.523 Sum_probs=170.1
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH----H
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW----L 206 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~----~ 206 (377)
|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 136999999999999999999999999999999999999999999999999987655322 3
Q ss_pred hcceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 207 REKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
++.++|+||++.+|. .|++||+.++... ... .+.+.++++..++.+..++.+ .+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP---------SELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh---------hhcCHHHHHHHHH
Confidence 567999999998885 6999999875321 111 122334444444444333333 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++||+++.+..||++++|++|++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE--AGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999999998642 37899999999998878999999999974
No 129
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.5e-50 Score=373.98 Aligned_cols=214 Identities=33% Similarity=0.534 Sum_probs=179.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCeEEECCEeCCCC--CHH
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DIR 204 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~~--~~~ 204 (377)
|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998653 244
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHH----HHHHhCCCCcccccCCCCCChHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVH----EFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~-~~~----~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
.+++.++|+||++.+|..|++||+.++... . ... +.+..+++..++. +.++.. ..+|||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---------~~~LSgG~ 149 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDS---------ALGLSGGQ 149 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCC---------cccCCHHH
Confidence 567789999999988889999999864211 1 111 2233344444443 222222 26799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|+++||||||++||+.++..+.+.|+++++ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK----KYTIVIVTHNMQQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999853 4799999999999865 9999999999999999
Q ss_pred ChHHHhhc
Q 017091 354 NHAELLHK 361 (377)
Q Consensus 354 ~~~~l~~~ 361 (377)
++++++..
T Consensus 226 ~~~~~~~~ 233 (247)
T TIGR00972 226 PTEQIFTN 233 (247)
T ss_pred CHHHHHhC
Confidence 99998754
No 130
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-49 Score=384.93 Aligned_cols=227 Identities=31% Similarity=0.477 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCC-------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH
Q 017091 131 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~ 203 (377)
.|+++||++.|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996311 2469999999999999999999999999999999999999999999999999987764
Q ss_pred H---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCC
Q 017091 204 R---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLL 270 (377)
Q Consensus 204 ~---~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~L 270 (377)
. .+|++|+||||++. ++ ..|+.+|+..... .... .+++.++++.+++. +.++..| .+|
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p---------~~L 155 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP---------HMF 155 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC---------ccC
Confidence 3 45678999999983 55 4799998864211 0111 12344455555553 2333333 689
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||||||||+|||||+.+|++||+||||++||+.++..+++.|.+++++ .|.|+|+||||++.+.. ||+|++|++|+|
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE--LGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 48899999999999975 999999999999
Q ss_pred EEEcChHHHhhcC-HHHHHH
Q 017091 350 IEVGNHAELLHKG-RLYAKL 368 (377)
Q Consensus 350 ~~~g~~~~l~~~~-~~~~~~ 368 (377)
++.|++++++++. ..|.+.
T Consensus 234 ve~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 234 VEKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EEECCHHHHhcCCCCHHHHH
Confidence 9999999998752 345543
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-50 Score=378.00 Aligned_cols=216 Identities=29% Similarity=0.538 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHHhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~i 210 (377)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7899999999642 35999999999999999999999999999999999999999999999999987654 34567789
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~--l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++. ++..|+.||+.++... ... .+.+..+++..++.++.+..+ ..||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara 150 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999985 4578999999875211 111 223344455556555544433 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE---KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999863 48899999999999877999999999999999999887654
No 132
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.3e-50 Score=366.58 Aligned_cols=209 Identities=27% Similarity=0.480 Sum_probs=175.4
Q ss_pred EEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 132 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999975311 169999999999999999999999999999999999999999999999999865 345567889
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+|+||++.+|. .|++||+.+... .... .+++.++++..++.+.+++.+ .+||||||||++||||+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence 99999998885 699999975321 1111 223444566666655554433 57999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
+.+|++|||||||++||+.+++.+.+.|+++++ +|+|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA---LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999853 37899999999999865 9999999999998754
No 133
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-49 Score=354.43 Aligned_cols=225 Identities=28% Similarity=0.454 Sum_probs=188.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
+++++||+..|+. .++|++|||++++||+++|+||||+|||||+|+|+|+.+|.+|+|.++|+|++..++.+ .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 5899999999985 37999999999999999999999999999999999999999999999999999988765 4677
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc--CCCCCChHHHHHHHHHHHHcC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~LSgGq~QRv~iAral~~ 286 (377)
|+||||...+| .+||+||+..|......++. ....+++..+-+|. +.... ...+|||||||.++|||||+.
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~-----~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA-----QERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc-----ccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 99999999999 78999999987422111011 01113334444452 21111 136899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCHHH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 365 (377)
+|++|+|||||.||-|.-.++|.+.|++++++ .|.||++|.++...+.. +||.++|++|+|+..|+.+++.++...-
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~--~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~ 231 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE--GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVR 231 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHc--CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHH
Confidence 99999999999999999999999999999853 47899999999998865 9999999999999999999998876543
Q ss_pred H
Q 017091 366 A 366 (377)
Q Consensus 366 ~ 366 (377)
+
T Consensus 232 ~ 232 (237)
T COG0410 232 E 232 (237)
T ss_pred H
Confidence 3
No 134
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-49 Score=372.53 Aligned_cols=216 Identities=33% Similarity=0.483 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC--------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------- 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-------- 202 (377)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5899999999974 36999999999999999999999999999999999999999999999999886432
Q ss_pred HHHHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 203 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
...+++.++|+||++.+| ..|+.||+.++.. .....+ .+.+.++..++.+..+. ...+||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~Gq~ 150 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS---------YPRRLSGGQQ 150 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhC---------ChhhCChHHH
Confidence 234577899999999888 5799999976411 111111 12222333333222221 2367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ .|.|||++||+++.+.. ||++++|++|++++.|+
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ---EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998863 37899999999999865 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++.+.
T Consensus 228 ~~~~~~~ 234 (250)
T PRK11264 228 AKALFAD 234 (250)
T ss_pred HHHHhcC
Confidence 9998754
No 135
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.4e-50 Score=367.29 Aligned_cols=208 Identities=32% Similarity=0.500 Sum_probs=171.4
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 207 (377)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 136999999999999999999999999999999999999999999999999987665433 23
Q ss_pred -cceEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 -EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 -~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.++|+||++.+| ..|++||+.++.. .... .+.+.+.++..++.+..++.+ ..||||||||++|
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 152 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP---------SELSGGERQRVAI 152 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 6799999999888 5799999976321 1111 112333444444444433333 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEE
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~ 350 (377)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .++|||++|||++.+..||+|++|++|+++
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE--LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999988642 378999999999998779999999999985
No 136
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.6e-50 Score=371.44 Aligned_cols=215 Identities=34% Similarity=0.548 Sum_probs=181.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC--HHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r~~ 209 (377)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999974 36999999999999999999999999999999999999999999999999987532 3456778
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
++|+||++.++ ..|++||+.++.. ..... +.+.++++..++.+.++..+ ..||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~ 149 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR 149 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence 99999999887 5799999987521 11111 22334444555544444333 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|+++||||||++||+.++..+.+.|+++++ +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE---EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998863 37899999999999965 999999999999999999988764
No 137
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-49 Score=385.78 Aligned_cols=227 Identities=24% Similarity=0.370 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC----CCCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 205 (377)
.|+++||++.|+.... ..+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999975321 359999999999999999999999999999999999997 48999999999998777554
Q ss_pred Hh----cceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH---HHHHhCCCCcccccCCCC
Q 017091 206 LR----EKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH---EFILSLPCGYETLVDDDL 269 (377)
Q Consensus 206 ~r----~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~ 269 (377)
++ +.|+||||++. ++ ..|+.+++..... .... .+.+.++++.+++. ..++..| .+
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p---------~~ 153 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP---------HQ 153 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc---------hh
Confidence 33 46999999984 44 4677766643210 0111 22344455555553 2233333 68
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
|||||||||+|||||+.+|++||+||||++||+.++..+++.|++++++ .|.|+|+||||++.+.. ||||++|++|+
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~--~g~til~iTHdl~~~~~~adri~vm~~G~ 231 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK--ENMALVLITHDLALVAEAAHKIIVMYAGQ 231 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999753 48899999999999865 99999999999
Q ss_pred EEEEcChHHHhhc-CHHHHHH
Q 017091 349 IIEVGNHAELLHK-GRLYAKL 368 (377)
Q Consensus 349 i~~~g~~~~l~~~-~~~~~~~ 368 (377)
|++.|++++++++ ...|.+.
T Consensus 232 ive~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 232 VVETGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred EEEECCHHHHhhCCCChHHHH
Confidence 9999999999865 3345443
No 138
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5e-50 Score=365.97 Aligned_cols=206 Identities=33% Similarity=0.541 Sum_probs=174.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 4789999999753 699999999999999999999999999999999999999999999999998654432 46799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+| ..|++||+.++... ... .+++.++++..++.++.+..+ .+||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~ 146 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV 146 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 999999888 57999999864211 111 123344556666665555444 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|+++||||||++||+.+++.+.+.|+++.++ .|+|||++||+++.+.. ||++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998642 37899999999999875 9999999999998865
No 139
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-49 Score=376.99 Aligned_cols=216 Identities=28% Similarity=0.422 Sum_probs=179.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~ 209 (377)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999974 369999999999999999999999999999999999999999999999999842 233456778
Q ss_pred eEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~--l~~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
|+|+||++. ++..|+.+|+.++.. ..... +.+..+++..++.++.+.. ..+||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrl~lar 149 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP---------IQCLSHGQKKRVAIAG 149 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC---------chhCCHHHHHHHHHHH
Confidence 999999985 456789999976421 11112 1233445555554443332 2579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|||++|||++.+.. ||++++|++|++++.|+++++...
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999863 37899999999999865 999999999999999999988764
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 227 ~ 227 (271)
T PRK13638 227 T 227 (271)
T ss_pred h
Confidence 3
No 140
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-49 Score=378.43 Aligned_cols=221 Identities=30% Similarity=0.527 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCC---CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHH
Q 017091 131 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~ 206 (377)
+|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 246999999999999999999999999999999999999999999999999986543 3456
Q ss_pred hcceEEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 REKIGFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 r~~i~~v~Q~~~--l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++.+||+||++. ++..|+.+|+.++... ... .+.+..+++.+++.++.++.| .+||||||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence 788999999984 5667899999875311 111 233455666677776666655 679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHh
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|||||+.+|+++||||||++||+.++..+.+.|+++.++ .|.|||++||+++.+..||++++|++|++++.|+++++.
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK--YGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998642 488999999999998779999999999999999999987
Q ss_pred hcC
Q 017091 360 HKG 362 (377)
Q Consensus 360 ~~~ 362 (377)
...
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 653
No 141
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-50 Score=378.74 Aligned_cols=215 Identities=35% Similarity=0.509 Sum_probs=182.3
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH----hc
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----RE 208 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~ 208 (377)
.++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 57799999975 369999999999999999999999999999999999999999999999999876554332 45
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+++|+||++.+| ..|+.||+.++... ... .+++.+.++..++.++++..| .+||||||||++|||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~lAr 173 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP---------DELSGGMQQRVGLAR 173 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc---------ccCCHHHHHHHHHHH
Confidence 799999999888 57999999864210 111 223445566666666665555 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++|||||||++||+.+++.+.+.|.++.++ .|+|||++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE--LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998642 37899999999999865 999999999999999999999764
No 142
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-50 Score=393.83 Aligned_cols=202 Identities=38% Similarity=0.579 Sum_probs=173.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEccCCcCc-ccc
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLL-QMD 223 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~-~~t 223 (377)
+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+ +++++|+||++.+| ..|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 8999999999999999999999999999999999999999999999999987665432 45799999999988 579
Q ss_pred HHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC
Q 017091 224 IKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 298 (377)
Q Consensus 224 v~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts 298 (377)
++||+.++... ... .+++.++++.+++.++.++.| .+|||||||||+|||||+.+|++|||||||+
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---------DELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 99999875311 111 223444566666655555554 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+||+.+++.+.+.|.+++++ .|+|||++|||++++.. ||+|++|++|++++.|++++++..
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~--~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAK--HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHH--CCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999998642 47899999999999865 999999999999999999998765
No 143
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-49 Score=373.31 Aligned_cols=224 Identities=25% Similarity=0.447 Sum_probs=188.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4899999999974 3699999999999999999999999999999999999999999999999998766666677789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-----C----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK-----D----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~-----~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|+||++.++ ..|+.||+.++... . ...+.+..+++..++.++.+..+ ..||||||||++|
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 149 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFL 149 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHH
Confidence 9999999887 46999999875210 0 01223444555556655544433 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|||++.+|++|||||||++||+.+++.+.+.|+++.+ .|+|+|++||+++.+.. ||++++|++|+++..|+++++.
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~---~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT---QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999999999999999998853 37899999999999865 9999999999999999999886
Q ss_pred hcCHHHHHHHH
Q 017091 360 HKGRLYAKLVK 370 (377)
Q Consensus 360 ~~~~~~~~~~~ 370 (377)
.. ..+.+.+.
T Consensus 227 ~~-~~~~~~~~ 236 (255)
T PRK11231 227 TP-GLLRTVFD 236 (255)
T ss_pred CH-HHHHHHhC
Confidence 53 34555553
No 144
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-49 Score=372.35 Aligned_cols=219 Identities=32% Similarity=0.476 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999974 3599999999999999999999999999999999999997 49999999998753 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.|+|+||++.+|..|++||+.++... . .. .+.+..+++.+++.+.+. ..+++ ...+||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~--~~~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT--NALSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC--CcccCCHHHHHH
Confidence 4567889999999988889999999875311 1 11 122333444444321111 01111 236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|++++ ++.|+|++||+++.+.. |||+++|++|++++.|+++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK----ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999984 25799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 98754
No 145
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-51 Score=366.32 Aligned_cols=229 Identities=27% Similarity=0.422 Sum_probs=190.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~ 209 (377)
.+++++++++|++- .+++||||++++||+++||||||||||||+++|+|+|+|++|+|.++|+++..+++.++ |..
T Consensus 4 lL~v~~l~k~FGGl---~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFGGL---TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecCCE---EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 47899999999863 69999999999999999999999999999999999999999999999999999987664 566
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC----------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
|+.-||.+.+| .+||.||+..+.... ....+..++.+ .+.++++.+...........+||+|||+|+
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence 99999999999 689999998752100 00011112222 233445554433333333468999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
.|||||+.+|++||||||.+||.+....++.+.|+++++. .|.||++|.|||+.+.. ||||+||+.|+++++|+|++
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~--~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 9999999999999999999999999999999999999753 47999999999999975 99999999999999999999
Q ss_pred HhhcCHHHH
Q 017091 358 LLHKGRLYA 366 (377)
Q Consensus 358 l~~~~~~~~ 366 (377)
+.++....+
T Consensus 237 V~~dp~Vie 245 (250)
T COG0411 237 VRNNPRVIE 245 (250)
T ss_pred HhcCHHhHH
Confidence 998765543
No 146
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-50 Score=367.48 Aligned_cols=208 Identities=34% Similarity=0.524 Sum_probs=174.3
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997521 1369999999999999999999999999999999999999999999999998753 35679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+|+||++.+|. .|++||+.++.. .... .+.+.+.++..++.+++++.+ ..||||||||++|||||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al 146 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999998885 799999986421 1111 223445556666655555444 57999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe--CCEEEEEcCh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH 355 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~--~G~i~~~g~~ 355 (377)
+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+.. ||++++|+ +|++++.++.
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRE--TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999988542 37899999999998865 99999999 7999998765
No 147
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-49 Score=372.10 Aligned_cols=217 Identities=31% Similarity=0.450 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3899999999975 3699999999999999999999999999999999999999999999999998776666667789
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCC-C----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYGCPKD-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~~~~~-~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+|+||++.+ +..|++||+.++.... . ..+.+.++++..++.++.+..+ .+||||||||++|||||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al 149 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVL 149 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 999999987 4789999998753211 1 1123344555555555444433 67999999999999999
Q ss_pred c------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 285 L------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 285 ~------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+ .+|++|||||||++||+.++..+.+.|+++.+. .|.|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE--RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 9 599999999999999999999999999998632 47899999999999875 99999999999999999988
Q ss_pred Hhhc
Q 017091 358 LLHK 361 (377)
Q Consensus 358 l~~~ 361 (377)
+...
T Consensus 228 ~~~~ 231 (258)
T PRK13548 228 VLTP 231 (258)
T ss_pred HhCh
Confidence 8653
No 148
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-51 Score=358.30 Aligned_cols=228 Identities=25% Similarity=0.454 Sum_probs=185.6
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hh
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LR 207 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r 207 (377)
|..+.++|+.|+|+++ +|+++|||+|++||++|+.|||||||||.+.++.|+.+|++|+|.+||.|++.++... .|
T Consensus 2 ~~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 2 MSTLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred CcEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence 3468999999999754 6999999999999999999999999999999999999999999999999999988654 35
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
..|||+||++.+| ..||+|||......... ......++..++++++.+....-....+..||||||+|+.|||||+.
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~--d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREK--DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhc--chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc
Confidence 5699999999999 68999999754221110 00111111222333333322111111235799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH-HhcCeEEEEeCCEEEEEcChHHHhhcCHH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRL 364 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-~~~d~v~~l~~G~i~~~g~~~~l~~~~~~ 364 (377)
+|+.+|||||++|+||.+...|.++++.++. +|..|+++.|+..+. .-|||.+++.+|++..+|+|+++.+++..
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence 9999999999999999999999999999974 589999999999765 56999999999999999999999987543
No 149
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-50 Score=364.47 Aligned_cols=204 Identities=27% Similarity=0.485 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++|+|++. ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 5789999999643 6999999999999 99999999999999999999999999999999999887655 56678899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+|. .|+.||+.+... .... .+.+..+++..++.++.+..+ .+||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI---------GSLSGGMRRRVGIAQALV 146 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch---------hhCCHHHHHHHHHHHHHh
Confidence 9999999885 699999976311 0111 233445566666665544433 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++|||++.+.. |||+++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGE----DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999853 4799999999999865 9999999999998754
No 150
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-49 Score=371.54 Aligned_cols=220 Identities=29% Similarity=0.495 Sum_probs=180.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCCHH
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 204 (377)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 2 NKIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred ceEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH
Confidence 35899999999975 3599999999999999999999999999999999999974 799999999998776666
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcCCCC-C--CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEPQLL-QMDIKSNIMYGCPK-D--VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~--~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
.+++.|+|+||++.++ ..|+.||+.++... . ... +.+.++++.+++.+.+.. .+ .....+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~--~~~~~~LSgG~~q 153 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RL--DAPAGKLSGGQQQ 153 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hh--cCCcccCCHHHHH
Confidence 7788899999999765 68999999865311 1 011 122333444433211100 00 1113679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK----KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCH
Confidence 9999999999999999999999999999999999999884 36899999999999864 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++.+.
T Consensus 230 ~~~~~~ 235 (250)
T PRK14247 230 REVFTN 235 (250)
T ss_pred HHHHcC
Confidence 998765
No 151
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-49 Score=375.56 Aligned_cols=219 Identities=33% Similarity=0.572 Sum_probs=187.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC---CeEEECCEeCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---G~I~i~g~~i~~~~~~~~r 207 (377)
.|+++|++|.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 48999999999743 2369999999999999999999999999999999999999998 8999999999766666677
Q ss_pred cceEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~--l~~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+++||+||++. ++..|+.||+.++.. ...+. +++.++++.+++.++.+..| .+||||||||++|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~l 154 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVAI 154 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHH
Confidence 88999999984 457899999987532 11222 23445666667666655555 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+..||++++|++|++++.|++++++.
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK--NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998642 4789999999999987799999999999999999998865
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
No 152
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-49 Score=373.37 Aligned_cols=217 Identities=24% Similarity=0.399 Sum_probs=185.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5899999999974 3699999999999999999999999999999999999999999999999998777666677789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|+||++.+| ..|++||+.++.... .. .+.+.++++..++.++.++.+ ..||||||||++|
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~l 154 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAWI 154 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHHH
Confidence 9999999887 579999998752111 01 123445556666655544433 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|||++.+|++|||||||++||+.+++.+.+.|.++.+. .|.|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998642 37899999999998865 9999999999999999999886
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 233 ~~ 234 (265)
T PRK10253 233 TA 234 (265)
T ss_pred hH
Confidence 53
No 153
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.8e-50 Score=364.94 Aligned_cols=203 Identities=36% Similarity=0.553 Sum_probs=171.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 208 (377)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999998765532 3567
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|++|++.+| ..|+.||+.++... ... .+++.++++..++.+..+..+ .+||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR 150 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 899999999888 57999999864210 111 223445555566655544443 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
||+.+|++|||||||++||+.++..+.+.|+++++ +|+|+|++||+++.+.. ||++++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK---RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999854 37899999999999976 99999999985
No 154
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-49 Score=370.68 Aligned_cols=219 Identities=30% Similarity=0.447 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC---CCCCeEEECCEeCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~r 207 (377)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+...++
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4889999999974 369999999999999999999999999999999999984 6999999999999876666678
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCC-CC------CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCPK-DV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.++|+||++.+|..|++||+.++... .. ..+++...++.+++.+++.... .....+||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL-----KQNALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh-----cCCcccCCHHHHHHHHH
Confidence 889999999999988999999875211 00 1112334445545433221110 11235799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|+++||||||++||+.++..+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|++++++
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS----HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999884 37899999999999865 9999999999999999999987
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 230 ~~ 231 (246)
T PRK14269 230 EN 231 (246)
T ss_pred hC
Confidence 64
No 155
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2e-49 Score=374.06 Aligned_cols=228 Identities=30% Similarity=0.418 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCC------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
+|+++||+|+|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998766543
Q ss_pred ---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCC
Q 017091 205 ---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLS 271 (377)
Q Consensus 205 ---~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LS 271 (377)
.+++.|+|+||++. ++ ..|++||+.++.. .... .+++.++++..++. ...+. ...+||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~~LS 152 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADK---------LPRQLS 152 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhC---------ChhhCC
Confidence 25678999999973 44 5799999865311 0111 12223333333332 12221 236799
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE
Q 017091 272 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 350 (377)
Q Consensus 272 gGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~ 350 (377)
||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+. .|+|||++|||++.+.. ||++++|++|+++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA--FGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998642 37899999999999975 9999999999999
Q ss_pred EEcChHHHhhcCH-HHHHHH
Q 017091 351 EVGNHAELLHKGR-LYAKLV 369 (377)
Q Consensus 351 ~~g~~~~l~~~~~-~~~~~~ 369 (377)
+.|+++++..... .++.+.
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 231 EECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred EECCHHHHcCCCCHHHHHHH
Confidence 9999999987433 344443
No 156
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-49 Score=370.78 Aligned_cols=217 Identities=24% Similarity=0.406 Sum_probs=180.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~ 209 (377)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999974 369999999999999999999999999999999999999999999999999877665443 456
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCC----------------CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCC
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKD----------------VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~~----------------~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 268 (377)
++|+||++.+|. .|++||+.++.... .. .+.+.+.++..++.++.+.. ..
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~ 152 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ---------AG 152 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC---------hh
Confidence 999999999885 69999998752100 00 01122233334443333322 26
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+++++ .|.|||++||+++.+.. ||++++|++|
T Consensus 153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE--HNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999998642 37899999999999865 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 017091 348 RIIEVGNHAELLHK 361 (377)
Q Consensus 348 ~i~~~g~~~~l~~~ 361 (377)
++++.|+++++.+.
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999999988654
No 157
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2e-49 Score=371.33 Aligned_cols=216 Identities=31% Similarity=0.496 Sum_probs=182.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC---------
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------- 202 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--------- 202 (377)
|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 479999999974 36999999999999999999999999999999999999999999999999886542
Q ss_pred ----HHHHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCC
Q 017091 203 ----IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 271 (377)
Q Consensus 203 ----~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LS 271 (377)
...+++.++|++|++.+| ..|+.||+.++.. .... .+.+.++++..++.++++..+ .+||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS 148 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS 148 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence 134577899999999888 5899999986421 0111 123344555555555544443 5799
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE
Q 017091 272 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 350 (377)
Q Consensus 272 gGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~ 350 (377)
||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|+|++||+++.+.. ||++++|++|+++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE--HDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999988642 37899999999999865 9999999999999
Q ss_pred EEcChHHHhhc
Q 017091 351 EVGNHAELLHK 361 (377)
Q Consensus 351 ~~g~~~~l~~~ 361 (377)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999998764
No 158
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-49 Score=368.27 Aligned_cols=216 Identities=25% Similarity=0.437 Sum_probs=179.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5899999999974 36999999999999999999999999999999999999999999999999987666533 4678
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCC--CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
++|+||++.++. .|+.||+.+.... ....+ .+.+.++..++.+..+. ....||||||||++|||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~lar 150 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDS---------MGQSLSGGERRRVEIAR 150 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhc---------chhhCCHHHHHHHHHHH
Confidence 999999998885 7999999875211 11111 12222333333222211 22579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|++.+|++|||||||++||+.++..+.+.+.++++ .|+|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998863 47899999999988865 999999999999999999998754
No 159
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-50 Score=370.91 Aligned_cols=221 Identities=36% Similarity=0.529 Sum_probs=195.3
Q ss_pred cEEEEEEEEEcCCCC---------------------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC
Q 017091 131 HVQFVNISFHYPSRP---------------------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~---------------------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G 189 (377)
.|+++||++-|+.+. -...++|+||+|+.||++.|.|-||||||||+|++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588999999887532 12358999999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCCHHHH----hcceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCC
Q 017091 190 QIYIDGFPLTDLDIRWL----REKIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPC 259 (377)
Q Consensus 190 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (377)
+|+++|.++..++.+++ |+++++|||+..|+ ..||.||+.||..- ....+...++++.+++..|-+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 99999999999887554 45799999999988 68999999998631 222344566888999999999988
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-c
Q 017091 260 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 338 (377)
Q Consensus 260 ~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~ 338 (377)
++|||||||||.|||||+.+|+|||+|||+|+|||--+.++++.|.+++++ -++|||+||||++++-+ .
T Consensus 163 --------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~--l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 --------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK--LKKTIVFITHDLDEALRIG 232 (386)
T ss_pred --------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHHhcc
Confidence 679999999999999999999999999999999999999999999998765 47899999999999865 9
Q ss_pred CeEEEEeCCEEEEEcChHHHhhcC
Q 017091 339 DRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 339 d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|||.+|++|+|+..|+|+|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999998764
No 160
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-49 Score=374.14 Aligned_cols=220 Identities=31% Similarity=0.493 Sum_probs=184.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 23599999999999999999999999999999999999999999999999998777666778889
Q ss_pred EEEccCCc-Cc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ-LL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~-l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++. +| ..|+.+|+.++... .... +.+..+++..++.++.+.. ..+||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~lara 156 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE---------PNALSGGQKQRVAIAGV 156 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC---------cccCCHHHHHHHHHHHH
Confidence 99999984 44 67899999875321 1111 2233344444444443332 26799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
++.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++||+++.+..||+|++|++|++++.|+++++....
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE--HNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999988542 378999999999988779999999999999999999987653
No 161
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-49 Score=371.88 Aligned_cols=219 Identities=32% Similarity=0.540 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 359999999999999999999999999999999999974 689999999999864 234
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|++||+.++.. ... . .+++..+++.+++.+.+... ......+||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LSgGq~qr 157 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDR-----LHESALGLSGGQQQR 157 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHH-----hhCCcccCCHHHHHH
Confidence 456788999999998887899999987421 111 1 12333444444443221110 011136799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||++||+.++..+.+.|++++ +++|||++|||++.+.. ||+|++|++|++++.|+++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK----ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999984 26799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 98764
No 162
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.4e-49 Score=367.43 Aligned_cols=223 Identities=24% Similarity=0.424 Sum_probs=178.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4899999999974 36999999999999999999999999999999999999999999999999987665543 3457
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCCCH-HH---HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN-ED---IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
++|+||++.+|. .|++||+.++....... .. .........+.++++.+............||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999885 69999998753211000 00 00000011123334433221111112367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG----KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999852 5799999999999975 99999999999999999999875
No 163
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-49 Score=364.89 Aligned_cols=213 Identities=27% Similarity=0.435 Sum_probs=176.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 210 (377)
|+++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999974 36999999999999999999999999999999999999999999999999987766543 35679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCC-CC-HHHHHHHHHHcC-HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPKD-VK-NEDIEWAAKQAY-VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~~-~~-~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+|+||++.+|. .|+.||+.++.... .. .+...+.++..+ +.+..+.. ..+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~---------~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR---------GGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCC---------hhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 69999998653211 11 111222333322 22222222 25799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
+|+++||||||++||+.++..+.+.|.++.++ .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999998642 37899999999999975 999999999999999999887
No 164
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.2e-49 Score=364.98 Aligned_cols=215 Identities=49% Similarity=0.801 Sum_probs=184.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.|+++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 46999999999975322369999999999999999999999999999999999999999999999998876666666788
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 287 (377)
++|++|++.+|+.|++||+.++.. .....++....+..++.++++.++.|+.+... ..+|||||||||+|||||+.+
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999888899999987643 22233333444556778888888766665443 468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
|++|||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWP----ERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999884 25799999999999977999999999874
No 165
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.7e-49 Score=364.89 Aligned_cols=206 Identities=28% Similarity=0.468 Sum_probs=172.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 208 (377)
|+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999422 3699999999999999999999999999999999999999999999999998765433 3567
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|+||++.++ ..|++||+.++.. .....+ ++.++++..++.++.++.+ .+||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence 899999999875 7899999987421 111221 2334555555555444433 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
||+.+|++|||||||++||+.+++.+.+.|.++++ .+.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR---VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999854 37899999999999976 99999999999864
No 166
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-49 Score=363.42 Aligned_cols=203 Identities=37% Similarity=0.625 Sum_probs=170.5
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999752 1369999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 213 VGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 213 v~Q~~~--l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
+||++. ++..|++||+.++... ... .+.+.+.++..++.+++++.+ ..||||||||++|||||+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~ 150 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 999984 4578999999764211 111 122344555556555544433 679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
.+|++|||||||++||+.+++.+.+.|.++.+ +|+|||++|||++.+.. ||+|++|++|+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKA---EGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998864 37899999999999976 99999999985
No 167
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.6e-49 Score=364.12 Aligned_cols=211 Identities=28% Similarity=0.421 Sum_probs=175.6
Q ss_pred cEEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---H
Q 017091 131 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 206 (377)
.|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999975311 25999999999999999999999999999999999999999999999999987765432 2
Q ss_pred -hcceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 -REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 -r~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++.++|+||++.++. .|+.||+.++.. .... .+++.++++..++.++++..| ..||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---------AQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHH
Confidence 357999999998885 699999976321 1111 223445556666655555444 579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 352 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~ 352 (377)
|||||+.+|++|||||||++||+.+.+.+.+.|++++++ .|.|||++|||++.+..||++++|++|++++.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE--HGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998642 37899999999998877999999999999763
No 168
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-49 Score=374.60 Aligned_cols=216 Identities=28% Similarity=0.488 Sum_probs=180.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~ 209 (377)
|+++||+++|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 7899999999642 359999999999999999999999999999999999999999999999999852 223456788
Q ss_pred eEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
|+|+||++ .++..|+.||+.++... .... +.+.++++..++.++.+.. ..+|||||+||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP---------PHHLSGGQKKRVAIAG 150 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC---------hhhCCHHHHHHHHHHH
Confidence 99999997 45678999999875211 1111 2233444555554433332 2679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++|||||||++||+.++..+.+.|.++.+ .|.|||++|||++.+.. ||++++|++|++++.|++++++..
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK---EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999863 37899999999999875 999999999999999999998764
No 169
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-49 Score=367.60 Aligned_cols=216 Identities=28% Similarity=0.456 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC------CCHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~------~~~~ 204 (377)
+|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998731 1234
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 205 WLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++|+|+||++.+| ..|+.||+.++.. ..... +.+.+.++..++.++++..+ ..||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr 149 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR 149 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence 5677899999999888 4799999964211 01111 22333444555544444433 5799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|+++||||||++||+.++..+.+.|+++++ .|+|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 47899999999999865 9999999999999999998
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 227 ~~~~~ 231 (242)
T PRK11124 227 CFTQP 231 (242)
T ss_pred HhcCc
Confidence 87543
No 170
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-49 Score=375.66 Aligned_cols=223 Identities=29% Similarity=0.457 Sum_probs=178.6
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC----CHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~ 204 (377)
.|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 389999999997421 13699999999999999999999999999999999999999999999999998653 234
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~i 280 (377)
.+++.|+|+||++ .+|..|++||+.++.. .....++.... +.++++.+... ........+||||||||++|
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALVGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 5677899999997 5677899999986421 11122221111 12223332211 00111236799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ---SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999863 37899999999999865 9999999999999999998886
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 234 ~~ 235 (280)
T PRK13649 234 QD 235 (280)
T ss_pred cC
Confidence 64
No 171
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.3e-49 Score=380.03 Aligned_cols=213 Identities=22% Similarity=0.415 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhce
Confidence 4899999999974 369999999999999999999999999999999999999999999999999865 345667889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|+.||+.+... .... .+++.++++..++.++.++. ...||||||||++|||||
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKK---------IGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence 9999999988 5799999975321 0111 12333444444444433332 257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+.+|++|||||||+|||+.+++.+++.+++++ .++|||++||+++.+.. ||||++|++|+++..|+++++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG----KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999984 26899999999999876 99999999999999999999865
No 172
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.1e-49 Score=370.09 Aligned_cols=214 Identities=26% Similarity=0.424 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999975 36999999999999999999999999999999999999999999999999988777666777899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~------~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
|++|++.++ ..|++||+.++.... . ..+.+.++++..++.++.+..+ ..||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM---------STLSGGERQRVHVA 149 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHH
Confidence 999998654 689999998752110 0 1112334445555544433322 57999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
||++.+|+++||||||++||+.+...+.+.|+++++ +|.|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA---TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999999863 37899999999999965 99999999999999999998865
No 173
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.8e-49 Score=362.41 Aligned_cols=204 Identities=32% Similarity=0.542 Sum_probs=172.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~ 208 (377)
++++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 369999999999999999999999999999999999999999999999999876543 23567
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|+||++.+|. .|++||+.++... ... .+++.++++..++.+..+..+ .+||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence 8999999998885 7999999864211 111 223445556666655554444 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||+.+|+++||||||++||+.+++.+.+.|+++.+ +|+|+|++||+++.+.. ||++++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK---AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999853 37899999999999975 999999999974
No 174
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-49 Score=376.53 Aligned_cols=222 Identities=28% Similarity=0.516 Sum_probs=178.5
Q ss_pred ccEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----C-C
Q 017091 130 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----L-D 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~-~ 202 (377)
+.|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3599999999997531 1259999999999999999999999999999999999999999999999998752 1 2
Q ss_pred HHHHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHHH----HHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHH
Q 017091 203 IRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNED----IEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~~----~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
...+++.|+|++|++ .+|..|++||+.++... ....++ +...++..++ .++.+ ....+|||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~---------~~~~~LS~Gq 155 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK---------RSPFELSGGQ 155 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhc---------CChhhCCHHH
Confidence 345677899999998 35677999999875311 112221 1122222222 11111 1236799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+. .|+|||+|||+++.+.. ||++++|++|++++.|
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE--YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999988642 37899999999998865 9999999999999999
Q ss_pred ChHHHhhcC
Q 017091 354 NHAELLHKG 362 (377)
Q Consensus 354 ~~~~l~~~~ 362 (377)
+++++++..
T Consensus 234 ~~~~~~~~~ 242 (289)
T PRK13645 234 SPFEIFSNQ 242 (289)
T ss_pred CHHHHhcCH
Confidence 998876543
No 175
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-49 Score=370.15 Aligned_cols=206 Identities=32% Similarity=0.439 Sum_probs=177.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999974 36999999999999999999999999999999999999999999999998753 346789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
+|++|++.+|. .|++||+.++.. ....+++.++++..++.+..++.+ .+||||||||++|||||+.+|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998885 799999987532 112344555666666665554443 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
+|||||||++||+.++..+.+.|+++.++ .++|||+||||++.+.. ||+|++|++|++++.++.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQ--HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999988542 47899999999999865 9999999999999988654
No 176
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-49 Score=370.09 Aligned_cols=221 Identities=34% Similarity=0.542 Sum_probs=180.4
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--C
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 201 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~ 201 (377)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346999999999974 369999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 202 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
+...++++|+|+||++.+|+.|++||+.++... .... +++.++++..++.+.+... ......+||||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~Gq~ 162 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDK-----LHQSGYSLSGGQQ 162 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH-----HhcCCCCCCHHHH
Confidence 345667889999999998889999999875211 1121 2233444444432111100 0111257999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.+++.+.+.|++++ ++.|||++||+++.+.. ||++++|++|++++.|+
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK----QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999984 25799999999999865 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++.+.
T Consensus 239 ~~~~~~~ 245 (260)
T PRK10744 239 TDTIFTK 245 (260)
T ss_pred HHHHHhC
Confidence 9998764
No 177
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-49 Score=362.47 Aligned_cols=214 Identities=32% Similarity=0.490 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+++|++. ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 7899999999642 239999999999999999999999999999999999999999999998875543 246799
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+|. .|+.||+.++.... ..++++.++++..++.+++++.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999998885 69999998753111 11234556677777777666665 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 363 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~ 363 (377)
.+|+++||||||++||+.+++.+.+.|.++.++ .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~ 222 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKA 222 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChh
Confidence 999999999999999999999999999988542 37899999999999865 99999999999999999999887653
No 178
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-49 Score=369.70 Aligned_cols=219 Identities=31% Similarity=0.478 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCC--CCCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT--DLDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~--~~~~ 203 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 5899999999974 3599999999999999999999999999999999999987 4999999999986 3344
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCC-CCC--CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 204 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV--KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~--~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
..++++++|+||++.+|. .|+.||+.++.. ... .. +.+.++++..++.+.+.. .......+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-----RLNDYPSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-----hhccChhhCCHHHH
Confidence 566778999999998884 699999986421 110 11 122333443333211110 00112357999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK----KEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----hCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999984 25799999999999865 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++++.
T Consensus 232 ~~~~~~~ 238 (253)
T PRK14267 232 TRKVFEN 238 (253)
T ss_pred HHHHHhC
Confidence 9998764
No 179
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.1e-49 Score=369.64 Aligned_cols=217 Identities=30% Similarity=0.448 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC---------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 201 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--------- 201 (377)
.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 5 KLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred cEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 5899999999974 3699999999999999999999999999999999999999999999999987531
Q ss_pred ----CHHHHhcceEEEccCCcCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCC
Q 017091 202 ----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLL 270 (377)
Q Consensus 202 ----~~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 270 (377)
....+++.++|+||++.++. .|++||+.++.. ..... +++.+.++..++.++.. .....+|
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~L 153 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ--------GKYPVHL 153 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh--------hCCcccC
Confidence 12355778999999999885 799999976311 01111 12233344444333220 1123679
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||||++|++|++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999863 38899999999999976 999999999999
Q ss_pred EEEcChHHHhhc
Q 017091 350 IEVGNHAELLHK 361 (377)
Q Consensus 350 ~~~g~~~~l~~~ 361 (377)
++.|+++++...
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998754
No 180
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-49 Score=382.14 Aligned_cols=227 Identities=23% Similarity=0.368 Sum_probs=183.4
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC----CCCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 205 (377)
.|+++||+++|+.. ....+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999532 12469999999999999999999999999999999999996 58999999999998776544
Q ss_pred H----hcceEEEccCCc--Cc-cccHHHHHhcCCC---CC----CC----HHHHHHHHHHcCHHH---HHHhCCCCcccc
Q 017091 206 L----REKIGFVGQEPQ--LL-QMDIKSNIMYGCP---KD----VK----NEDIEWAAKQAYVHE---FILSLPCGYETL 264 (377)
Q Consensus 206 ~----r~~i~~v~Q~~~--l~-~~tv~eni~~~~~---~~----~~----~~~~~~~~~~~~l~~---~~~~~~~~~~~~ 264 (377)
+ ++.|+||||++. ++ ..||.+|+..... .. .. .+++.+.++.+++.+ .++..|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 3 347999999986 33 4789999864210 00 00 123344455555532 223333
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEE
Q 017091 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 343 (377)
Q Consensus 265 ~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~ 343 (377)
.+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|++++++ .|.|+|+||||++.+.. ||+|++
T Consensus 157 ---~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN--NNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence 679999999999999999999999999999999999999999999998653 48899999999999975 999999
Q ss_pred EeCCEEEEEcChHHHhhc-CHHHHHH
Q 017091 344 IDDGRIIEVGNHAELLHK-GRLYAKL 368 (377)
Q Consensus 344 l~~G~i~~~g~~~~l~~~-~~~~~~~ 368 (377)
|++|+|++.|++++++.+ ...|.+.
T Consensus 232 m~~G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 232 LYCGQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHHH
Confidence 999999999999999865 3346553
No 181
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-49 Score=363.85 Aligned_cols=200 Identities=29% Similarity=0.554 Sum_probs=167.4
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999974 35999999999999999999999999999999999999999999999998763 35678999
Q ss_pred EccCCcC---ccccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 213 VGQEPQL---LQMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 213 v~Q~~~l---~~~tv~eni~~~~~~~------~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+||++.+ +..|++||+.++.... . ..+++.++++..++.++.++.+ .+||||||||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 143 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL 143 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence 9999876 4579999998753211 0 1223445566666655554433 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++.+ +|.|+|++|||++.+.. ||++++|++| +++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR---EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999864 37899999999999865 9999999886 55543
No 182
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.2e-49 Score=380.48 Aligned_cols=207 Identities=26% Similarity=0.417 Sum_probs=172.4
Q ss_pred EEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc
Q 017091 139 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 218 (377)
Q Consensus 139 ~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 218 (377)
++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++++||+||++.
T Consensus 1 k~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~ 76 (302)
T TIGR01188 1 KVYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYAS 76 (302)
T ss_pred CeeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCC
Confidence 35653 369999999999999999999999999999999999999999999999999865 34456778999999998
Q ss_pred Cc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 017091 219 LL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 292 (377)
Q Consensus 219 l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ill 292 (377)
++ ..|++||+.+... .... .+++.++++.+++.+..++. ..+||||||||++|||||+.+|++||
T Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 77 VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP---------VGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCc---------hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88 5799999976321 1111 12233444555544333322 26799999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 293 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 293 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|||||+|||+.+++.+.+.|+++++ .|+|||++||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~---~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKE---EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999999999864 37899999999999975 999999999999999999988643
No 183
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-49 Score=358.53 Aligned_cols=204 Identities=34% Similarity=0.539 Sum_probs=173.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999742 2 39999999999999999999999999999999999999999999999876543 356799
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|++|++.+|. .|++||+.++.... ..++++.++++..++.++.+..| .+||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP---------GELSGGERQRVALARVLV 144 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999999885 69999998753211 11234555667777766666555 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|++|||||||++||+.++..+.+.|++++++ .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999998642 47899999999999965 9999999999998754
No 184
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.6e-49 Score=385.99 Aligned_cols=212 Identities=28% Similarity=0.419 Sum_probs=176.2
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE----eCCCCCHHH---Hh-
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLDIRW---LR- 207 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~----~i~~~~~~~---~r- 207 (377)
++.+.|+. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|. ++...+... .|
T Consensus 29 ~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 33445543 36899999999999999999999999999999999999999999999997 555554433 23
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
++|+|+||++.+|+ .|++||+.++... ... .+...++++.+++.++.+..| .+|||||||||+||
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~LA 176 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGLA 176 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 57999999999985 8999999876311 111 123345566666655555444 57999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|+||||||||++||+.++..+++.|.+++++ .++|+|+||||++++.. ||||++|++|++++.|++++++.
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~--~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK--LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999998653 47899999999999855 99999999999999999999986
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
+
T Consensus 255 ~ 255 (382)
T TIGR03415 255 N 255 (382)
T ss_pred C
Confidence 5
No 185
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-49 Score=370.45 Aligned_cols=221 Identities=31% Similarity=0.470 Sum_probs=180.6
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--C
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 201 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~ 201 (377)
...|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 346999999999974 3699999999999999999999999999999999999975 89999999999864 2
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC--C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 202 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
+...+++.++|+||++.+|..|+.||+.++.. ... . .+++..+++..++.+.+... ......+|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDR-----LHEPGTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHH-----hhCCcccCCHHH
Confidence 34556788999999999887799999987521 010 1 12233444444443221100 011135799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++. .+.|||++||+++.+.. ||++++|++|++++.|
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR----QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh----cCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999884 25799999999999965 9999999999999999
Q ss_pred ChHHHhhc
Q 017091 354 NHAELLHK 361 (377)
Q Consensus 354 ~~~~l~~~ 361 (377)
++++++..
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14235 245 DTEKMFTN 252 (267)
T ss_pred CHHHHHhC
Confidence 99998754
No 186
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-49 Score=384.53 Aligned_cols=213 Identities=29% Similarity=0.492 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHHh
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r 207 (377)
|++ ||+++|++. .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ....+
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 778 999999742 33 999999999999999999999999999999999999999999999886421 23456
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
++++|+||++.+| ..|++||+.++.. ....+++.+.++..++.+++++.| .+|||||||||+|||||+.
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence 7899999999988 5799999998643 223445566677777666655555 6799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+|++|||||||++||+.+++.+.+.|+++.++ .|.|+|+||||++.+.. ||++++|++|++++.|++++++.+.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE--INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999998653 37899999999998865 9999999999999999999998764
No 187
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.4e-48 Score=368.75 Aligned_cols=230 Identities=26% Similarity=0.444 Sum_probs=185.2
Q ss_pred cEEEEEEEEEcCCC------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
+|+++||+++|+.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 123699999999999999999999999999999999999999999999999998654444
Q ss_pred HHhcceEEEccCCc--Cc-cccHHHHHhcCCCC--CCC----HHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHH
Q 017091 205 WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCPK--DVK----NEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~--~~~----~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
..++.++|+||++. ++ ..|+.+|+.+.... ... .+++.++++.+++ .+..+.. ..+|||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY---------PHMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC---------chhcCHHH
Confidence 55668999999985 34 46899998653110 111 1233444555554 2222222 25799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.+++.+.+.|.++.++ .|.|||++||+++.+.. ||++++|++|++++.|
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998642 37899999999999976 9999999999999999
Q ss_pred ChHHHhhcC--HHHHHHHHH
Q 017091 354 NHAELLHKG--RLYAKLVKR 371 (377)
Q Consensus 354 ~~~~l~~~~--~~~~~~~~~ 371 (377)
+++++.+.. ..+.+++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 233 STADVLASPLHELTKRLIAG 252 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHh
Confidence 999987653 445666654
No 188
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=8.7e-49 Score=361.18 Aligned_cols=211 Identities=34% Similarity=0.497 Sum_probs=169.5
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HHHh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r 207 (377)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999999999999999999999999999876653 4567
Q ss_pred cceEEEccCC--cCc-cccHHHHHhcCCCC---CCCHHHHH----HHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 017091 208 EKIGFVGQEP--QLL-QMDIKSNIMYGCPK---DVKNEDIE----WAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 208 ~~i~~v~Q~~--~l~-~~tv~eni~~~~~~---~~~~~~~~----~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
+.++|++|++ .++ ..|++||+.++... ....+... +.++..++. .+.+. ...+|||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LS~G~~q 152 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNR---------YPHELSGGQRQ 152 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhC---------CchhcCHHHHH
Confidence 7899999998 344 58999999753211 11111111 222233321 12222 23679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++||+++.+.. ||++++|++|++++.|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE--LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998642 37899999999999875 9999999999998754
No 189
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-49 Score=359.23 Aligned_cols=203 Identities=27% Similarity=0.525 Sum_probs=168.9
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999974 369999999999999999999999999999999999999999999999987642 3567899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.++. .|++||+.+... .... .+.+.+.++..++.+..+..+ .+||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV---------EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH---------hhCCHHHHHHHHHHHHHh
Confidence 9999998884 799999976421 0111 122333444444444333322 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|+++||||||++||+.+++.+.+.|+++++ +++|||++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR---AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 37899999999999865 9999999999998754
No 190
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-49 Score=368.91 Aligned_cols=220 Identities=30% Similarity=0.478 Sum_probs=178.0
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCC--
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-- 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~-- 202 (377)
..|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35999999999974 3599999999999999999999999999999999999985 8999999999885432
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
...+++.++|+||++.+|..|++||+.++.. .....+ .+.++++.+++.+.+.. .+ ......||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~--~~~~~~LSgG~~qr 162 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSD---RL--KSPALSLSGGQQQR 162 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhh---hh--cCChhhCCHHHHHH
Confidence 3345778999999998888999999987421 111121 12233333333111000 01 11135799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|++++ +++|||++|||++.+.. ||+|++|++|++++.|+++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~----~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK----KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 26899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.++
T Consensus 239 ~~~~~ 243 (258)
T PRK14268 239 QIFHN 243 (258)
T ss_pred HHhcC
Confidence 98754
No 191
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.7e-49 Score=359.45 Aligned_cols=203 Identities=37% Similarity=0.545 Sum_probs=170.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~ 209 (377)
|+++||+++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999975 369999999999999999999999999999999999999999999999998853 233456788
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
++|+||++.+| ..|++||+.++.. ..... +++.++++..++.+.+++.+ .+||||||||++|||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~ 148 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 148 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence 99999999888 4799999976421 11111 22334445555554444433 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
|++.+|++|||||||++||+.+++.+.+.|+++++ .|+|||++||+++.+.. ||++++|++|++
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 37899999999999965 999999999974
No 192
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-48 Score=378.96 Aligned_cols=229 Identities=26% Similarity=0.402 Sum_probs=182.0
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~ 206 (377)
.|+++|+++.|+.. ....+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 1246999999999999999999999999999999999999996 9999999999988776543
Q ss_pred ---h-cceEEEccCC--cCc-cccHHHHHhcCCC--CCCCHH----HHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCCh
Q 017091 207 ---R-EKIGFVGQEP--QLL-QMDIKSNIMYGCP--KDVKNE----DIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSG 272 (377)
Q Consensus 207 ---r-~~i~~v~Q~~--~l~-~~tv~eni~~~~~--~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSg 272 (377)
| +.|+||||++ .++ ..|+.+|+..... .....+ .+.+.++.+++. ...+. ...+++|||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~-------~~~~~~~~~p~~LSg 164 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP-------EARKRMKMYPHEFSG 164 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------ChHHHhcCCcccCCH
Confidence 3 4799999998 354 4788888754211 111221 222333333332 11111 112478999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
||||||+|||||+.+|++||+||||++||+.++..+.+.|++++++ .|.|+|+||||++.+.. ||+|++|++|+|++
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE--FNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999753 47899999999999975 99999999999999
Q ss_pred EcChHHHhhc-CHHHHHH
Q 017091 352 VGNHAELLHK-GRLYAKL 368 (377)
Q Consensus 352 ~g~~~~l~~~-~~~~~~~ 368 (377)
.|++++++++ ...|.+.
T Consensus 243 ~g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 243 YGNARDVFYQPSHPYSIG 260 (330)
T ss_pred ECCHHHHHhCCCCHHHHH
Confidence 9999999875 3345543
No 193
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.6e-48 Score=367.21 Aligned_cols=225 Identities=27% Similarity=0.405 Sum_probs=183.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCC-----C
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL-----D 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~-----~ 202 (377)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... .
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999974 36999999999999999999999999999999999999986 49999999988543 2
Q ss_pred HHHHhcceEEEccCCcCcc-ccHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCC
Q 017091 203 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 268 (377)
...+++.++|+||++.+|. .|+.||+.++.... ....++.++++..++.+..+..+ .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~ 151 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV---------S 151 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc---------c
Confidence 2445678999999998875 79999998753110 01123344555555544444333 5
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .|.|||++|||++.+.. ||+|++|++|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN--DGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999998642 37899999999998765 9999999999
Q ss_pred EEEEEcChHHHhhcCHHHHHHHHH
Q 017091 348 RIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 348 ~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
++++.|+++++ . .....++|..
T Consensus 230 ~i~~~g~~~~~-~-~~~~~~~~~~ 251 (262)
T PRK09984 230 HVFYDGSSQQF-D-NERFDHLYRS 251 (262)
T ss_pred EEEEeCCHHHh-c-cHHHHHHHhh
Confidence 99999999986 2 2334555543
No 194
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7.7e-49 Score=361.42 Aligned_cols=212 Identities=25% Similarity=0.425 Sum_probs=175.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999974 3699999999999999999999999999999999999999999999999998877766677889
Q ss_pred EEEccCCcCccccHHHHHhcCCC--CC-CCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCP--KD-VKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~--~~-~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+|+||++.+|+.|++||+.++.. .. ...+.+.+.++..++. ...+ ....+|||||+||++|||||+.
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILT---------KNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhc---------CCcccCCHHHHHHHHHHHHHhc
Confidence 99999999888899999976421 11 1122233344444432 1222 1236799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEe-CCEEEEEcChH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID-DGRIIEVGNHA 356 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~-~G~i~~~g~~~ 356 (377)
+|+++||||||++||+.+.+.+.+.|.++.++ .|.|||++||+++.+..||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVRE--QNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998642 3789999999999987799999995 56666777764
No 195
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-48 Score=354.07 Aligned_cols=203 Identities=33% Similarity=0.552 Sum_probs=174.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.++++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999753 2369999999999999999999999999999999999999999999999999877776677888
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+|+||++.+|+.|++||+.+.. ....+++.+.++ ++ .....|||||+||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~-------~~---------~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR-------VS---------EGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh-------cc---------CCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999997642 122222222221 11 1236799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcCh
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~ 355 (377)
++||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||++++|++|++++.|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF----TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999873 37899999999999877999999999999988763
No 196
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-48 Score=363.58 Aligned_cols=221 Identities=32% Similarity=0.545 Sum_probs=178.8
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--C
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 201 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~ 201 (377)
|+.|+++||++.|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 1 ~~~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 1 MGKISVKDLDLFYGDF---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred CCeEEEEEEEEEECCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4568999999999743 699999999999999999999999999999999999863 69999999999864 2
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 202 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
+...+|+.++|+||++.+|+.|++||+.++.. ... . .+.+.++++..++.+.+... ......+||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~G~~ 152 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR-----LKKSALGLSGGQQ 152 (250)
T ss_pred chHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHH-----HhcCCCCCCHHHH
Confidence 34456788999999998888999999987521 111 1 12223333344332111100 0111257999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK----KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999884 26799999999998865 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++...
T Consensus 229 ~~~~~~~ 235 (250)
T PRK14240 229 TVDLFTN 235 (250)
T ss_pred HHHHHhC
Confidence 9998754
No 197
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=367.22 Aligned_cols=219 Identities=28% Similarity=0.459 Sum_probs=178.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 13 ~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 13 IISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred eEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 5999999999974 359999999999999999999999999999999999987 699999999998753 345
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
..+++.++|+||++.+|..|++||+.++.... .. ++.+.++++.+++...+... . .....+||||||||++
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~--~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDK---L--NESGYSLSGGQQQRLC 164 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhh---h--CCCcccCCHHHHHHHH
Confidence 56778899999999988779999998753211 11 12223334433332111110 0 1112579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC-----------C
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-----------G 347 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~-----------G 347 (377)
|||||+.+|++|||||||++||+.++..+.+.|++++ ++.|||++||+++.+.. ||++++|++ |
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK----KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999999999884 25799999999999865 999999996 6
Q ss_pred EEEEEcChHHHhhc
Q 017091 348 RIIEVGNHAELLHK 361 (377)
Q Consensus 348 ~i~~~g~~~~l~~~ 361 (377)
++++.|++++++..
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 79999999999764
No 198
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-49 Score=340.73 Aligned_cols=217 Identities=32% Similarity=0.475 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC---------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 201 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--------- 201 (377)
.++++|+.++|+.. .+|++||++-++|+.+.|+|.|||||||+|+||.=+..|+.|.|.++|..+.-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999864 599999999999999999999999999999999999999999999999877421
Q ss_pred -C---HHHHhcceEEEccCCcCc-cccHHHHHhcC------CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCC
Q 017091 202 -D---IRWLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLL 270 (377)
Q Consensus 202 -~---~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 270 (377)
+ ...+|.+.|+|||+.+|+ .+|+.||+.-+ .+.....++....+.++++.+-.+.+| ..|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~L 153 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AHL 153 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------ccc
Confidence 1 235688899999999999 69999998643 222112233444567778777777777 569
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||||+||++|||||+.+|+++|+|||||+|||+-.-++++.++++.+ .|+|.++|||.|.+++. +.+|++|++|.|
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe---EgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE---EGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH---hCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 99999999999999999999999999999999999999999999975 49999999999999987 899999999999
Q ss_pred EEEcChHHHhhcC
Q 017091 350 IEVGNHAELLHKG 362 (377)
Q Consensus 350 ~~~g~~~~l~~~~ 362 (377)
-++|+|++++.+.
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 9999999999764
No 199
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-48 Score=366.30 Aligned_cols=219 Identities=29% Similarity=0.463 Sum_probs=176.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999974 369999999999999999999999999999999999865 7999999999998642 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|++||+.++... .. .. +.+..+++..++...+.. .......+||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-----RLHSSALSLSGGQQQR 172 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-----HHhcCcccCCHHHHHH
Confidence 4567789999999998888999999865211 11 11 112223333332110000 0011236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++++ +.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE----EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999842 5799999999998865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.++
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 98765
No 200
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-48 Score=364.20 Aligned_cols=219 Identities=29% Similarity=0.454 Sum_probs=178.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--C---CCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5999999999974 369999999999999999999999999999999999997 3 69999999999853 234
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~-~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|++||+.++... . ...+ ++.++++..++.+.+... + .....+||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l--~~~~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---L--HTQALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---h--hCCcccCCHHHHHH
Confidence 4567789999999998878999999875211 1 1111 122233333332211100 0 11235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|+++||||||++||+.++..+.+.|.+++ +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK----EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999984 25799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
+++++
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98764
No 201
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.7e-48 Score=354.76 Aligned_cols=205 Identities=32% Similarity=0.526 Sum_probs=175.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++||++.|+. .++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 468999999962 568999999999999999999999999999999999999999999999986543 3567899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+|. .|+.||+.++.... ....++.++++..++.+..++.| .+||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------EQLSGGQRQRVALARCLV 144 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999998885 79999997642111 11234555677777776666655 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
.+|+++||||||++||+.++..+.+.|+++.++ .+.|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998642 37899999999999865 99999999999998875
No 202
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-48 Score=366.65 Aligned_cols=216 Identities=27% Similarity=0.362 Sum_probs=181.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC--------CCeEEECCEeCCCCCH
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDI 203 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~--------~G~I~i~g~~i~~~~~ 203 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 36999999999999999999999999999999999999998 9999999999877666
Q ss_pred HHHhcceEEEccCCc-CccccHHHHHhcCCCCC------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 017091 204 RWLREKIGFVGQEPQ-LLQMDIKSNIMYGCPKD------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 273 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~-l~~~tv~eni~~~~~~~------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgG 273 (377)
..+++.++|+||++. ++..|++||+.++.... .. .+.+.++++..++.+..++. ..+||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG 149 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD---------VTTLSGG 149 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC---------cccCCHH
Confidence 667778999999986 45789999998753111 01 11233344445544433322 2679999
Q ss_pred HHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEE
Q 017091 274 QKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 343 (377)
Q Consensus 274 q~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~ 343 (377)
|||||+|||||+ .+|++|||||||++||+.+++.+.+.|+++.++ .|.|||+||||++.+.. ||++++
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD--WNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence 999999999999 599999999999999999999999999998642 37899999999999865 999999
Q ss_pred EeCCEEEEEcChHHHhhc
Q 017091 344 IDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 344 l~~G~i~~~g~~~~l~~~ 361 (377)
|++|++++.|+++++.+.
T Consensus 228 l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 228 LADGAIVAHGAPADVLTP 245 (272)
T ss_pred EECCeEEEecCHHHHcCH
Confidence 999999999999988653
No 203
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.1e-49 Score=335.74 Aligned_cols=211 Identities=30% Similarity=0.439 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HH
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 206 (377)
.|+++++++..+... ..++|++|+|.|++||.+|||||||||||||+-+++|+.+|++|+|.+.|+++..++.. .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 489999999886542 34799999999999999999999999999999999999999999999999999988754 33
Q ss_pred h-cceEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 R-EKIGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 r-~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
| +++|||||..+|. ++|..||+..+.... .......+.++++++.+.+..+| .+|||||+|||+
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP---------~qLSGGEQQRVA 156 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP---------AQLSGGEQQRVA 156 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc---------cccCchHHHHHH
Confidence 3 6799999999887 799999998754211 11222344566666666666666 789999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 352 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~ 352 (377)
|||||+..|+||+.||||.+||..+-++|.+++..+.++ .|.|.|+||||+..+.+|||++.|.+|+|+++
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre--~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh--cCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999998875 69999999999999999999999999999753
No 204
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-48 Score=363.18 Aligned_cols=219 Identities=31% Similarity=0.498 Sum_probs=176.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC---CCC--CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl---~~p--~~G~I~i~g~~i~~~--~~ 203 (377)
+|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999974 3599999999999999999999999999999999997 455 589999999998653 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|+.||+.++... .. .. +.+.++++.+++.+.+... ......+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDK-----LKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhh-----hhCCcccCCHHHHHH
Confidence 4567789999999998888999999864211 11 11 1222333333332111100 011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK----KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999984 36899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.++
T Consensus 231 ~~~~~ 235 (250)
T PRK14245 231 KIFTN 235 (250)
T ss_pred HHhcC
Confidence 99765
No 205
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=365.44 Aligned_cols=227 Identities=30% Similarity=0.471 Sum_probs=186.5
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-C----CCCeEEECCEeCCCCCHHH
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-P----SDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p----~~G~I~i~g~~i~~~~~~~ 205 (377)
++++|++.+|.... ...+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|+++..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68999999997532 2469999999999999999999999999999999999998 4 5799999999998888764
Q ss_pred H---h-cceEEEccCCcC-c--cccHHHHHhcCCC--CCC-C----HHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 017091 206 L---R-EKIGFVGQEPQL-L--QMDIKSNIMYGCP--KDV-K----NEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 268 (377)
Q Consensus 206 ~---r-~~i~~v~Q~~~l-~--~~tv~eni~~~~~--~~~-~----~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~ 268 (377)
+ | +.|+||||+|.- + -.||.+.+.-... ... . .++..+.++.+++.+ .++.+| +
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------h 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC---------c
Confidence 3 3 569999999853 2 3566665532211 111 1 234555666666642 456666 7
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||||||.||.||+.+|++||.||||++||...+.+|+++|++++++ .|.|+|+||||+..+.. ||||+||..|
T Consensus 153 elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e--~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE--KGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 89999999999999999999999999999999999999999999999874 68999999999999876 9999999999
Q ss_pred EEEEEcChHHHhhcC-HHHHHHH
Q 017091 348 RIIEVGNHAELLHKG-RLYAKLV 369 (377)
Q Consensus 348 ~i~~~g~~~~l~~~~-~~~~~~~ 369 (377)
+|+|.|+.++++.+. ..|.+.+
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHH
Confidence 999999999999863 3465543
No 206
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-48 Score=363.61 Aligned_cols=219 Identities=31% Similarity=0.480 Sum_probs=176.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999974 369999999999999999999999999999999999997 489999999998753 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|++|++.+|+.|++||+.++... .. .. +.+..+++..++..... ........+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-----DNLDRNAQAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-----HHhccChhhCCHHHHHH
Confidence 4567789999999998888999999865211 11 11 12222333333311000 00011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|+++||||||++||+.+++.+.+.|+++. ++.|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK----HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH----cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 25799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14251 232 EMFIA 236 (251)
T ss_pred HHHhC
Confidence 98754
No 207
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-48 Score=389.36 Aligned_cols=230 Identities=33% Similarity=0.486 Sum_probs=192.9
Q ss_pred cEEEEEEEEEcCCC--------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC--CC
Q 017091 131 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TD 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i--~~ 200 (377)
.++++||++.|... ....+++||||++++||++||||+||||||||.|+|+|+++|++|+|.++|.++ +.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 57899999999741 124689999999999999999999999999999999999999999999999872 22
Q ss_pred CCHHHHhcceEEEccCCcC--c-cccHHHHHhcCCC--C----CCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCC
Q 017091 201 LDIRWLREKIGFVGQEPQL--L-QMDIKSNIMYGCP--K----DVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLL 270 (377)
Q Consensus 201 ~~~~~~r~~i~~v~Q~~~l--~-~~tv~eni~~~~~--~----~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~L 270 (377)
-.....|+++-+|||||+- - ..||.++|..... . ....+++.+.++.+++.+ +++++| ++|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------~el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------HEL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------hhc
Confidence 2234567889999999963 2 5899999975321 1 111234556677777754 566666 789
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||||||||||||||+.+|++|++|||||+||+..+..+.++|++++++ .|.|.|+||||+..++. ||||++|++|+|
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e--~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE--LGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 999999999999999999999999999999999999999999999875 58999999999999987 999999999999
Q ss_pred EEEcChHHHhhc-CHHHHHHHHH
Q 017091 350 IEVGNHAELLHK-GRLYAKLVKR 371 (377)
Q Consensus 350 ~~~g~~~~l~~~-~~~~~~~~~~ 371 (377)
++.|+.+++++. ...|.+.+..
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999887 4567765543
No 208
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-48 Score=363.63 Aligned_cols=205 Identities=30% Similarity=0.448 Sum_probs=171.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999974 3699999999999999999999999999999999999999999999999987642 24589
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|++|++.++. .|++||+.++.. .... .+++.+.++..++.+..++.+ .+||||||||++|||||+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI---------WQLSGGQRQRVGIARALA 144 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999998885 799999986421 1111 122344455555544443333 679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe--CCEEEEEcCh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH 355 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~--~G~i~~~g~~ 355 (377)
.+|++|||||||++||+.++..+.+.|+++.+. .|+|||++|||++.+.. ||+|++|+ +|++++.++.
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE--TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999988532 37899999999999865 99999998 5999998754
No 209
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-48 Score=365.07 Aligned_cols=221 Identities=29% Similarity=0.423 Sum_probs=179.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~ 202 (377)
..|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 36999999999964 369999999999999999999999999999999999996 589999999999853 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.|+|+||++.+|..|++||+.++... .. .. +.+.++++..++.+.+... ......+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-----~~~~~~~LS~G~~q 170 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDD-----LHKSALTLSGGQQQ 170 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhh-----hcCCcccCCHHHHH
Confidence 44567789999999998888999999875321 11 11 1223334444432211110 01123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|.++. ++.|||++||+++.+.. ||++++|++|++++.|++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK----KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999884 25799999999999865 999999999999999999
Q ss_pred HHHhhcC
Q 017091 356 AELLHKG 362 (377)
Q Consensus 356 ~~l~~~~ 362 (377)
+++....
T Consensus 247 ~~~~~~~ 253 (267)
T PRK14237 247 RNIFTNP 253 (267)
T ss_pred HHHhcCC
Confidence 9987643
No 210
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.4e-48 Score=361.78 Aligned_cols=217 Identities=24% Similarity=0.292 Sum_probs=172.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEECCEeCCCCCHHHH-hc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWL-RE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-r~ 208 (377)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999974 36999999999999999999999999999999999994 7999999999999877665443 44
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC--------CCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCC-CCChHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKD--------VKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD-LLSGGQKQR 277 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~-~LSgGq~QR 277 (377)
.++|+||++.+| ..|++||+.+..... ....+.. ..+.+.++.+.... ....... .||||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence 599999999888 469999987532100 0111100 11223333322110 0011123 499999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEcCh
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g~~ 355 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +|.|||++|||++.+.. ||++++|++|++++.|++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE---PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999853 37899999999999864 799999999999999998
Q ss_pred HHHh
Q 017091 356 AELL 359 (377)
Q Consensus 356 ~~l~ 359 (377)
+++.
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 7654
No 211
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-48 Score=361.86 Aligned_cols=219 Identities=33% Similarity=0.473 Sum_probs=176.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CC---CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EP---SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p---~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 36999999999999999999999999999999999995 36 599999999988542 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|++||+.++.. ... .. +++..+++..++.+.+... ......+||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~qr 156 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDR-----LHDSALGLSGGQQQR 156 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHH-----HhcCcccCCHHHHHH
Confidence 456778999999999888999999986421 011 11 1222334444332111100 011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK----DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTK 232 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh----hCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 25799999999998865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++++.
T Consensus 233 ~~~~~ 237 (252)
T PRK14239 233 QMFMN 237 (252)
T ss_pred HHHhC
Confidence 98765
No 212
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=362.91 Aligned_cols=215 Identities=29% Similarity=0.478 Sum_probs=177.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 359999999999999999999999999999999999997 699999999998853 234
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHH-H----HHHHHHHcC----HHHHHHhCCCCcccccCCCCCChH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNE-D----IEWAAKQAY----VHEFILSLPCGYETLVDDDLLSGG 273 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~-~----~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~LSgG 273 (377)
..+++.++|+||++.+|..|++||+.++... ....+ . +.++++..+ +.+.++. ....||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~---------~~~~LSgG 171 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHD---------NAYGLSGG 171 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhc---------CcccCCHH
Confidence 4567789999999998888999999864211 11111 1 122222222 1111111 12579999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 352 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~ 352 (377)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++|||++.+.. ||++++|++|++++.
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK----KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999885 25799999999999865 999999999999999
Q ss_pred cChHHHhhc
Q 017091 353 GNHAELLHK 361 (377)
Q Consensus 353 g~~~~l~~~ 361 (377)
|+++++..+
T Consensus 248 g~~~~~~~~ 256 (271)
T PRK14238 248 DDTDKIFSN 256 (271)
T ss_pred CCHHHHHcC
Confidence 999998765
No 213
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-48 Score=360.77 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=178.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCC-CCCH
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT-DLDI 203 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~-~~~~ 203 (377)
..++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+.
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 2 NKFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred CeEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccch
Confidence 35899999999974 3699999999999999999999999999999999999986 5999999999885 3345
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCC-H----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-N----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|+.||+.++... ... . +++.++++..++.+.+.. .......+||||||||
T Consensus 79 ~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD-----RLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH-----HhhcCcccCCHHHHHH
Confidence 5667889999999998889999999875211 111 1 122233333333221110 0011125799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK----NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999852 4799999999999876 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 230 ~~~~~ 234 (249)
T PRK14253 230 VIFSN 234 (249)
T ss_pred HHHcC
Confidence 88653
No 214
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.5e-48 Score=344.49 Aligned_cols=178 Identities=36% Similarity=0.657 Sum_probs=161.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999753 23699999999999999999999999999999999999999999999999987654 455678899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|+||++.+|+.|++||+ + ..||||||||++||||++.+|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i-----------------------------~---------~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL-----------------------------G---------RRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh-----------------------------c---------ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999987 1 569999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+..||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL----KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999883 368999999999998779999999999998754
No 215
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-48 Score=360.39 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999974 3699999999999999999999999999999999999875 799999999998643 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
...++.++|+||++.+|+.|++||+.++... .. .. +++.++++.+++.+.+... .......||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-----LKKSALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-----hhCCcccCCHHHHHH
Confidence 4567789999999998889999999875211 11 11 1223344444432111100 011236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++||||++.+|++|||||||++||+.++..+.+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK----EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999999998853 4799999999999875 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14270 232 KIFLE 236 (251)
T ss_pred HHhcC
Confidence 98765
No 216
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=6.9e-48 Score=362.13 Aligned_cols=221 Identities=27% Similarity=0.381 Sum_probs=178.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe-----CCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-----i~~~~~~~ 205 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998 76655433
Q ss_pred ----HhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHH
Q 017091 206 ----LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQK 275 (377)
Q Consensus 206 ----~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq~ 275 (377)
.++.++|+||++. ++ ..|+.+|+.+... ......+.. ..+.++++.++... .......+||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 3557999999984 33 4688999864210 001111111 11344555544321 11222468999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999988642 37899999999999975 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++..+
T Consensus 236 ~~~~~~~ 242 (258)
T PRK11701 236 TDQVLDD 242 (258)
T ss_pred HHHHhcC
Confidence 9998754
No 217
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.7e-48 Score=342.14 Aligned_cols=173 Identities=43% Similarity=0.731 Sum_probs=160.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ..++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999753 246999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|++|++.+|+.|++||+ ||||||||++|||||+.+|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999987 7999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
||||||++||+.++..+.+.|+++++ +|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKA---AGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998853 37899999999998877999999999974
No 218
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-47 Score=359.54 Aligned_cols=219 Identities=26% Similarity=0.455 Sum_probs=178.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~~--~~ 203 (377)
.|+++||+|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999974 35999999999999999999999999999999999999997 69999999988542 33
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCC-H----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-N----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|++||+.++... ... . +.+..+++..++.+.+..+ ......+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDN-----LHKSGLALSGGQQQR 155 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhH-----hhCCcccCCHHHHHH
Confidence 4567889999999998888999999875311 111 1 1222233333332221110 011236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK----QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHH
Confidence 999999999999999999999999999999999999883 36899999999999876 8999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14249 232 EIFSR 236 (251)
T ss_pred HHHhC
Confidence 98764
No 219
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5e-48 Score=378.50 Aligned_cols=211 Identities=32% Similarity=0.504 Sum_probs=176.9
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHHhcceE
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG 211 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~~i~ 211 (377)
||+++|++. .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+ ....++.++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999742 35 999999999999999999999999999999999999999999999986432 224567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDVK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
|+||++.+| ..|++||+.++...... .+++.+.++..++.++.++.| .+|||||||||+|||||+.+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHcC
Confidence 999999988 47999999886421111 122444555555555444443 67999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|++|||||||++||+.+++.+.+.|+++.++ .|+|+|++|||++.+.. ||++++|++|++++.|+++++....
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999999999998643 37899999999999865 9999999999999999999987654
No 220
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-48 Score=358.77 Aligned_cols=214 Identities=30% Similarity=0.492 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~~---~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF---VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999876543 256899
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|++|++.+| ..|+.||+.++.. .... .+++..+++..++.++++..+ ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence 999999988 4699999976421 1111 223344555556655555444 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.+|+++||||||++||+.+++.+.+.|++++++ .|+|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE--LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999998642 37899999999999865 999999999999999999888764
No 221
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8.5e-48 Score=363.48 Aligned_cols=232 Identities=28% Similarity=0.418 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCC------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-
Q 017091 131 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI- 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~- 203 (377)
.|+++||+|.|++. .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999731 02469999999999999999999999999999999999999999999999998876554
Q ss_pred --HHHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHH
Q 017091 204 --RWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQK 275 (377)
Q Consensus 204 --~~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~ 275 (377)
..+++.++|+||++. ++ ..|+.+|+.+... ...... .....+.++++.+... .........||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 245778999999983 44 5799999864311 011111 1111223344433211 001122367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .+.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ--FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH--cCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 9999999999999999999999999999999999999998642 37899999999999975 99999999999999999
Q ss_pred hHHHhhcCHHHHHHH
Q 017091 355 HAELLHKGRLYAKLV 369 (377)
Q Consensus 355 ~~~l~~~~~~~~~~~ 369 (377)
++++......|...+
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (268)
T PRK10419 236 VGDKLTFSSPAGRVL 250 (268)
T ss_pred hhhccCCCCHHHHHH
Confidence 999886655554444
No 222
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-48 Score=360.25 Aligned_cols=219 Identities=31% Similarity=0.487 Sum_probs=177.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5899999999974 3699999999999999999999999999999999999984 899999999988642 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|++||+.++... .. .. +.+..+++..++.+.+..+ ......+||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSE-----LNKPGTRLSGGQQQR 154 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHH-----HhCChhhcCHHHHHH
Confidence 3557789999999998889999999864211 11 11 1223333433332211100 011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS----ENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh----cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999884 25799999999998765 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.+.
T Consensus 231 ~~~~~ 235 (250)
T PRK14262 231 EIVER 235 (250)
T ss_pred HHHhC
Confidence 98764
No 223
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-48 Score=362.27 Aligned_cols=219 Identities=30% Similarity=0.479 Sum_probs=176.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~ 203 (377)
.++++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECCE---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 48999999999753 599999999999999999999999999999999999974 79999999998853 334
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
..+++.++|++|++.+|. .|++||+.++... .. .. +.+.++++..++.+.+.. .......+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-----RLDKPGGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-----HhhCCcccCCHHHHH
Confidence 456788999999998885 7999999764211 11 11 122333444443211110 001123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe------CCEE
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID------DGRI 349 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~------~G~i 349 (377)
||+|||||+.+|++|||||||++||+.++..+.+.|++++ +++|||++||+++.+.. ||+|++|+ +|++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i 231 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK----QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL 231 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE
Confidence 9999999999999999999999999999999999999984 25799999999999865 99999997 8999
Q ss_pred EEEcChHHHhhc
Q 017091 350 IEVGNHAELLHK 361 (377)
Q Consensus 350 ~~~g~~~~l~~~ 361 (377)
++.|++++++..
T Consensus 232 ~~~~~~~~~~~~ 243 (258)
T PRK14241 232 VEIDDTEKIFSN 243 (258)
T ss_pred EecCCHHHHHhC
Confidence 999999998764
No 224
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-48 Score=340.44 Aligned_cols=223 Identities=26% Similarity=0.416 Sum_probs=191.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+.+|++++..++ .+|+++||++++||++||+||||||||||+|.|+|.+.|++|++.++|.+++.+++.++.++-
T Consensus 1 mi~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 1 MIRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred CeeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHh
Confidence 48899999998754 699999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCCCC-----HHH--HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYGCPKDVK-----NED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~~~~~~~-----~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+.+||+..+ |+.||+|.+.+|..+... +++ ..+++.++++..+..+.- ..|||||||||.+||
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y---------~~LSGGEqQRVqlAR 148 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY---------RTLSGGEQQRVQLAR 148 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch---------hhcCchHHHHHHHHH
Confidence 999999987 799999999998643211 222 345666666665544322 469999999999999
Q ss_pred HHcC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcCh
Q 017091 283 AILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 283 al~~------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~ 355 (377)
.|++ ++++|+||||||+||...+..++++.+++.+ .|..|+.|-||++... +||||++|++|+++..|+|
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~---~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR---EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh---cCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 9985 4569999999999999999999999999975 4789999999999985 5999999999999999999
Q ss_pred HHHhhcCHHHHHHH
Q 017091 356 AELLHKGRLYAKLV 369 (377)
Q Consensus 356 ~~l~~~~~~~~~~~ 369 (377)
+++++.+. .++.|
T Consensus 226 ~~vlt~Et-l~~vy 238 (259)
T COG4559 226 QDVLTDET-LERVY 238 (259)
T ss_pred HHhcCHHH-HHHHh
Confidence 99987543 34443
No 225
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7.9e-48 Score=354.06 Aligned_cols=207 Identities=27% Similarity=0.423 Sum_probs=176.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999875321 24799
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+||++.++ ..|++||+.++.. ......++.++++..++.++.+..+ ..||||||||++||||++.+|+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 4799999975321 1123445556666666665554433 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||||++||+.+++.+.+.|+++++ .|+|+|++|||++.+.. ||++++|++|++++.|++.+
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPE---QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999853 37899999999999865 99999999999999998765
No 226
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=359.11 Aligned_cols=219 Identities=29% Similarity=0.465 Sum_probs=178.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--C---CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... ..
T Consensus 4 ~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 4 KVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred EEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 5899999999974 369999999999999999999999999999999999986 4 699999999998643 33
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
..+++.++|+||++.+|. .|+.||+.++... . ... +.+.++++..++.+.+... ......+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~q 155 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-----LKSNAMELSGGQQQ 155 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-----hhCCcCcCCHHHHH
Confidence 456788999999999885 7999999864211 1 111 2233334444443221110 01123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.|++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE----KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh----CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999852 4799999999999865 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 998765
No 227
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=361.66 Aligned_cols=219 Identities=30% Similarity=0.459 Sum_probs=179.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999974 369999999999999999999999999999999999986 489999999998853 334
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
..+++.++|++|++.+|+.|+.||+.++.... .. .+.+..+++..++.+.+.... .....+||||||||++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-----~~~~~~LSgGq~qrv~ 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKL-----KQSGLSLSGGQQQRLC 161 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHh-----cCCcccCCHHHHHHHH
Confidence 56678899999999888779999998753211 11 122333444444433222110 1123579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe---------CCEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID---------DGRI 349 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~---------~G~i 349 (377)
|||||+.+|++|||||||++||+.++..+.+.|.++.+ ++|||++||+++.+.. ||+|++|+ +|++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE----QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999999999999999999999999999999852 4799999999999865 99999998 8999
Q ss_pred EEEcChHHHhhc
Q 017091 350 IEVGNHAELLHK 361 (377)
Q Consensus 350 ~~~g~~~~l~~~ 361 (377)
++.|+++++.+.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
No 228
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-47 Score=347.98 Aligned_cols=199 Identities=35% Similarity=0.508 Sum_probs=173.1
Q ss_pred EEEEEEEEEcCCCCC--CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 132 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
|+++||+++|++... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975310 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 287 (377)
|+|++|++.+|+.|++||+.++.. ...+....+.+.+++.+++..+|.++++... ...||||||||++|||||+.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP--FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC--cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998632 2344555667777888889998888777654 367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHH-HHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 288 PAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~-l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
|+++||||||++||+.+.+.+.+. +.++.+ .|.|||++||+++.+..||++++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~---~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcc---CCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999999989874 555532 3789999999999987799999999985
No 229
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-48 Score=361.73 Aligned_cols=220 Identities=32% Similarity=0.481 Sum_probs=178.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--CC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~ 202 (377)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. ..
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999974 3599999999999999999999999999999999999985 48999999998853 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.|+|+||++.+|+.|++||+.++... . ..+ +.+.++++..++.+.+... . ......|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~--~~~~~~LS~G~~q 157 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L--NKSALGLSGGQQQ 157 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h--cCCcccCCHHHHH
Confidence 34567789999999998889999999764211 0 111 2233444444443222111 0 1123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe-----CCEEE
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-----DGRII 350 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~-----~G~i~ 350 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++++ ++|||++||+++.+.. ||++++|+ +|+++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS----ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 99999999999999999999999999999999999999842 5799999999999875 99999998 59999
Q ss_pred EEcChHHHhhc
Q 017091 351 EVGNHAELLHK 361 (377)
Q Consensus 351 ~~g~~~~l~~~ 361 (377)
+.|+++++.+.
T Consensus 234 ~~~~~~~~~~~ 244 (259)
T PRK14260 234 EFGVTTQIFSN 244 (259)
T ss_pred EeCCHHHHhcC
Confidence 99999998754
No 230
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-47 Score=354.18 Aligned_cols=213 Identities=31% Similarity=0.531 Sum_probs=181.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|+++.|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 478999999963 38999999999999999999999999999999999999999999999999876543 357899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+| ..|+.||+.++.... .. .+++.++++.+++.+++++.+ ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence 999999888 589999998642111 11 223345566666666655544 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.+|++++|||||++||+.+++.+.+.|+++.++ .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~--~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKE--FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998542 37899999999999875 999999999999999999888764
No 231
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-48 Score=361.30 Aligned_cols=218 Identities=33% Similarity=0.508 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCCC--HH
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLD--IR 204 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~~--~~ 204 (377)
-+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999964 369999999999999999999999999999999999986 47999999999875432 23
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCC-CCC--C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
.+++.++|+||++.+|+.|+.||+.++.. ... . ++.+..+++..++.+.+... .......||||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDR-----LKDSAFELSGGQQQR 157 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhH-----hhcChhhCCHHHHHH
Confidence 46778999999999887899999986421 111 1 11222333444432211000 011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK----KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 36899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
+++..
T Consensus 234 ~~~~~ 238 (251)
T PRK14244 234 EIFKN 238 (251)
T ss_pred HHhcC
Confidence 98765
No 232
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-47 Score=364.88 Aligned_cols=220 Identities=31% Similarity=0.451 Sum_probs=177.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCC--C
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~ 202 (377)
..|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... .
T Consensus 38 ~~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGEF---EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 359999999999743 59999999999999999999999999999999999864 4999999999987542 2
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.++|+||++.+|..|+.||+.++... .. .. +.+.++++..++.+.+.. .. ......|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~--~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD---RL--DKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh---Hh--hCChhhCCHHHHH
Confidence 23467789999999998877999999875211 11 11 122233333332111100 00 1123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||++|||++.+.. ||++++|++|++++.|++
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~----~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR----GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999884 25799999999999865 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++.++
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 998764
No 233
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.7e-47 Score=355.24 Aligned_cols=214 Identities=32% Similarity=0.517 Sum_probs=179.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF---QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe---eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 4789999999743 69999999999999999999999999999999999999999999999999865432 367899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+|. .|+.||+.+.... ... .+.+.++++..++.++.++.+ .+||+||+||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP---------NQLSGGQRQRVALARALA 146 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999885 6999999875321 111 122333444444444433332 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
++|+++||||||++||+.+++.+.+.|+++.++ .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE--VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999988542 37899999999999865 999999999999999999998754
No 234
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-47 Score=362.45 Aligned_cols=220 Identities=30% Similarity=0.497 Sum_probs=179.2
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--CC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~ 202 (377)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 36999999999964 3699999999999999999999999999999999999884 89999999999864 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.++|+||++.+|..|++||+.++.. ... . .+.+.++++..++.+.+... ......+|||||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~Gq~q 175 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR-----LHENAFGLSGGQQQ 175 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHH-----hhCCcccCCHHHHH
Confidence 4456788999999999887799999986421 111 1 12233344444432211110 01123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|+++||||||++||+.++..+.+.|+++++ +.|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 251 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS----KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999852 5799999999999865 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++...
T Consensus 252 ~~~~~~ 257 (272)
T PRK14236 252 DTLFTS 257 (272)
T ss_pred HHHhcC
Confidence 998754
No 235
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=358.37 Aligned_cols=220 Identities=28% Similarity=0.420 Sum_probs=177.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999974 3699999999999999999999999999999999999763 489999999998754 33
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
...++.++|+||++.+|+.|++||+.++... .. .. +.+.++++..++.+.+... .......||||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~G~~qr 157 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDR-----LHDSALSLSGGQQQR 157 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHH-----hhcChhhCCHHHHHH
Confidence 4567789999999998888999999875321 11 11 1222333333332111100 011135799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++||||++.+|+++||||||++||+.+++.+.+.|+++++ ++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~----~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK----EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh----CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence 9999999999999999999999999999999999998852 4799999999999965 9999999999999999999
Q ss_pred HHhhcC
Q 017091 357 ELLHKG 362 (377)
Q Consensus 357 ~l~~~~ 362 (377)
++....
T Consensus 234 ~~~~~~ 239 (253)
T PRK14261 234 QIFENP 239 (253)
T ss_pred HHHhCC
Confidence 987543
No 236
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-47 Score=361.30 Aligned_cols=220 Identities=28% Similarity=0.479 Sum_probs=177.7
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~ 202 (377)
..|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 36999999999974 369999999999999999999999999999999999997 689999999998854 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC-CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
...+++.++|+||++.+|..|+.||+.++... .. ..+++..+++..++...+.. .......+||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-----QLDSSGLDLSGGQQQRL 189 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-----HHhCCcccCCHHHHHHH
Confidence 44567889999999988877999999864211 11 12233344444443211110 00112367999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEE-EEeCCEEEEEcChH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDGRIIEVGNHA 356 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~-~l~~G~i~~~g~~~ 356 (377)
+|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|||++||+++.+.. |||++ +|++|++++.|+++
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~----~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE----EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999853 3699999999999875 99975 67999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++..+
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 98754
No 237
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-47 Score=359.77 Aligned_cols=220 Identities=27% Similarity=0.410 Sum_probs=178.7
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--C
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--D 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~ 202 (377)
..|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... .
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999974 3699999999999999999999999999999999999863 699999999988532 3
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCCC-C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
...+++.|+|+||++.+|+.|+.||+.++.... . .++.+..+++.+++.+.+... .......|||||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK-----LKEKGTALSGGQQQRL 170 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH-----hcCCcccCCHHHHHHH
Confidence 345677899999999988779999998752111 1 112223344444443222110 0111257999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe---------CCE
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID---------DGR 348 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~---------~G~ 348 (377)
+|||||+.+|++|||||||++||+.++..+.+.|++++ ++.|||++|||++.+.. ||++++|+ +|+
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK----EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999984 25799999999999865 99999998 899
Q ss_pred EEEEcChHHHhhc
Q 017091 349 IIEVGNHAELLHK 361 (377)
Q Consensus 349 i~~~g~~~~l~~~ 361 (377)
+++.|+++++...
T Consensus 247 ~~~~g~~~~~~~~ 259 (274)
T PRK14265 247 LVEFSPTEQMFGS 259 (274)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998764
No 238
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.7e-47 Score=351.20 Aligned_cols=207 Identities=30% Similarity=0.470 Sum_probs=173.0
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
++++|+++.|+++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 14699999999999999999999999999999999999999999999999998765532 356
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.++|+||++.+|. .|+.||+.++... .... +.+.++++..++.++++..| ..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l 152 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI 152 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 78999999999885 7999999864211 1111 23444555555555555444 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
|||++.+|+++||||||++||+.++..+.+.|+++.++ .++|+|++||+++....||+|++|++|++
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE--QGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998642 47899999999997666999999999986
No 239
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-47 Score=361.13 Aligned_cols=219 Identities=27% Similarity=0.473 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCC-HH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-IR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~-~~ 204 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3699999999999999999999999999999999999986 7999999999987543 34
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCC--CCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~--~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
.+++.++|+||++.+|+.|++||+.++... ....++. .+.++..++...+.. .......+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD-----RLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhh-----HhhCCcccCCHHHHHHH
Confidence 567889999999998889999999875311 1122222 122233333211100 00112367999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.+++.+.+.|+++++ ++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998853 4799999999999865 99999999999999999999
Q ss_pred Hhhc
Q 017091 358 LLHK 361 (377)
Q Consensus 358 l~~~ 361 (377)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 9765
No 240
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-47 Score=358.63 Aligned_cols=221 Identities=29% Similarity=0.477 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~--~~~ 203 (377)
.|+++||+++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 7 ~l~~~nl~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCCe---eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 59999999999642 5999999999999999999999999999999999999985 8999999998742 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|++||+.++... .. .. +.+.++++..++.+++... .......||||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LSgGq~qr 158 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-----IHKSALDLSGGQQQR 158 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-----hcCCcccCCHHHHHH
Confidence 4567789999999998889999999764210 11 11 1233344444433222110 011225799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC-----CEEEE
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-----GRIIE 351 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~-----G~i~~ 351 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++++. .+.|+|+||||++.+.. ||+|++|++ |++++
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR--SELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999987542 47899999999999875 999999999 99999
Q ss_pred EcChHHHhhc
Q 017091 352 VGNHAELLHK 361 (377)
Q Consensus 352 ~g~~~~l~~~ 361 (377)
.|+++++.+.
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999999765
No 241
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2e-46 Score=355.74 Aligned_cols=238 Identities=27% Similarity=0.414 Sum_probs=192.8
Q ss_pred HHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 105 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 105 rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.+++..++++.. ..+.+.....|+++|+++. + +++|+|+||+|++||+++|+||||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~~---~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQENN---DRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhccccccc---ccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555555544321 1222233446999999985 2 35999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc
Q 017091 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264 (377)
Q Consensus 185 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (377)
+|++|+|.++| .|+|++|++.+++.|++||+.++.. .........++..++.+.++.+|.++++.
T Consensus 88 ~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 152 (282)
T cd03291 88 EPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNTV 152 (282)
T ss_pred CCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc--cCHHHHHHHHHHhCCHHHHHhccccccce
Confidence 99999999988 3999999999988899999988632 12333445566677788888888776655
Q ss_pred cC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 265 VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 265 ~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
+. ...||||||||++|||||+.+|++|||||||++||+.++..+.+.+ ..+. .+.|||++||+++.+..||++
T Consensus 153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~----~~~tIiiisH~~~~~~~~d~i 228 (282)
T cd03291 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADKI 228 (282)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh----CCCEEEEEeCChHHHHhCCEE
Confidence 44 3689999999999999999999999999999999999999898754 5553 368999999999998779999
Q ss_pred EEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 342 VVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 342 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
++|++|++++.|+++++......|.+.+
T Consensus 229 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 229 LILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 9999999999999999886544455443
No 242
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-47 Score=355.59 Aligned_cols=219 Identities=27% Similarity=0.450 Sum_probs=176.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~--~~~ 203 (377)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.. ...
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4899999999974 36999999999999999999999999999999999999874 8999999999864 233
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCC-CCC-CHHHHHH----HHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV-KNEDIEW----AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~-~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
..+++.++|+||++.+|. .|+.||+.++.. ... ..+...+ .++..++.+.+. ...+ ....+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~--~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK---DRLK--TPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh---hhhc--CCcccCCHHHHH
Confidence 456778999999998885 699999976421 111 1221111 122222211110 0111 123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|++++ +++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK----KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999884 25899999999999875 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
++++..
T Consensus 232 ~~~~~~ 237 (252)
T PRK14272 232 DQLFTN 237 (252)
T ss_pred HHHHhC
Confidence 998765
No 243
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-47 Score=355.79 Aligned_cols=220 Identities=30% Similarity=0.495 Sum_probs=176.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--C---CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~~--~~ 203 (377)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999975 5 599999999988532 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|+++|+.++.. ... .. +++...++..++.+.+.. .......+||||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD-----HLHESALSLSGGQQQR 156 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhh-----HHhcCcccCCHHHHHH
Confidence 456778999999999888899999986421 111 11 112222333332111100 0011236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 4799999999999865 9999999999999999999
Q ss_pred HHhhcC
Q 017091 357 ELLHKG 362 (377)
Q Consensus 357 ~l~~~~ 362 (377)
+++.+.
T Consensus 233 ~~~~~~ 238 (252)
T PRK14255 233 QMFLNP 238 (252)
T ss_pred HHhcCC
Confidence 987653
No 244
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.2e-47 Score=354.57 Aligned_cols=221 Identities=27% Similarity=0.376 Sum_probs=175.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe-----CCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-----i~~~~~~~ 205 (377)
.|+++||++.|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCCc---eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 48999999999743 58999999999999999999999999999999999999999999999987 65555432
Q ss_pred ----HhcceEEEccCCcC--c-cccHHHHHhcCC--CCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHH
Q 017091 206 ----LREKIGFVGQEPQL--L-QMDIKSNIMYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQK 275 (377)
Q Consensus 206 ----~r~~i~~v~Q~~~l--~-~~tv~eni~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq~ 275 (377)
+++.++|++|++.. + ..|+.+|+.+.. ......... ...+.++++.++... ........||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 24579999999853 2 468888885321 000001110 112344555544321 11112367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
|||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999987542 37899999999999975 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++..+
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9998754
No 245
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-47 Score=348.56 Aligned_cols=203 Identities=31% Similarity=0.489 Sum_probs=166.2
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHHhc
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLRE 208 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~ 208 (377)
.+ ||+|+|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 999999753 34 99999999 999999999999999999999999999999999999875321 234567
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
.++|+||++.+| ..|++||+.++..... ..+++.+.++..++.+..+.. ..+||||||||++||||+
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~al 146 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRY---------PAQLSGGEKQRVALARAL 146 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcC---------cccCCHHHHHHHHHHHHH
Confidence 899999999888 5799999987532110 112233444444444433332 267999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
+.+|+++||||||++||+.+++.+.+.|+++.++ .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKN--LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998642 37899999999999865 9999999999998765
No 246
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.3e-47 Score=346.48 Aligned_cols=209 Identities=28% Similarity=0.454 Sum_probs=177.9
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHHhc
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLRE 208 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~r~ 208 (377)
.+.|++|+|+.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999753 469999999999999999999999999999999999999999999999998765432 23456
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcC
Q 017091 209 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 209 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~ 286 (377)
.++|++|++.+|+.|++||+.++.. ...++...+++..++.+.++.+|.++++... ...||||||||++||||++.
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 7999999999888899999988532 2344455667777877778888877766554 46899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHH--HHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 287 DPAILLLDEATSALDSESEHYVKG--VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~--~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
+|++|||||||++||+.++..+.+ .++.+++ .|.|+|++||+++.+..||++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~---~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD---DKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999988 5666543 4789999999999987799999999874
No 247
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=9e-47 Score=353.81 Aligned_cols=224 Identities=24% Similarity=0.401 Sum_probs=178.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC----CCCeEEECCEeCCCCCHHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~ 206 (377)
.|+++||+++| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 3 2599999999999999999999999999999999999999 999999999988532 222
Q ss_pred hcceEEEccCCc-Cc--cccHHHHHhcCC---CCCCCHHHHHHHHHHcCHHH---HHHhCCCCcccccCCCCCChHHHHH
Q 017091 207 REKIGFVGQEPQ-LL--QMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 207 r~~i~~v~Q~~~-l~--~~tv~eni~~~~---~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
++.++|+||++. .| ..|+.+|+.+.. ......+++.+.++..++.+ .++. ...+||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKL---------YPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhc---------CCcccCHHHHHH
Confidence 457999999985 34 368888875421 11112233444455544432 1122 125799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999988642 47899999999999865 9999999999999999999
Q ss_pred HHhhcC--HHHHHHHHH
Q 017091 357 ELLHKG--RLYAKLVKR 371 (377)
Q Consensus 357 ~l~~~~--~~~~~~~~~ 371 (377)
++.+.. ...+.++..
T Consensus 227 ~~~~~~~~~~~~~~~~~ 243 (254)
T PRK10418 227 TLFNAPKHAVTRSLVSA 243 (254)
T ss_pred HHhhCCCCHHHHHHHHh
Confidence 987653 233444443
No 248
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-47 Score=353.57 Aligned_cols=220 Identities=32% Similarity=0.492 Sum_probs=180.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCC--C
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~ 202 (377)
..++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +
T Consensus 2 ~~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 78 (250)
T PRK14266 2 YRIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78 (250)
T ss_pred cEEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence 35899999999974 369999999999999999999999999999999999874 4899999999998642 3
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCC-CC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.++|+||++.+|..|+.||+.++.. .. ... +.+.++++.+++.+.+... . ......|||||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~--~~~~~~LS~Gq~q 153 (250)
T PRK14266 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---L--DKSALGLSGGQQQ 153 (250)
T ss_pred HHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---H--hCCcccCCHHHHH
Confidence 4456788999999999998899999986521 11 111 2233345555543332211 0 1123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|++++ ++.|||++||+++.+.. ||++++|++|++++.|++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK----EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLT 229 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999884 36799999999999876 899999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++...
T Consensus 230 ~~~~~~ 235 (250)
T PRK14266 230 DQIFIN 235 (250)
T ss_pred HHHHhC
Confidence 998754
No 249
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.3e-47 Score=388.44 Aligned_cols=215 Identities=29% Similarity=0.425 Sum_probs=179.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh-cc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r-~~ 209 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999974 3699999999999999999999999999999999999999999999999998776655443 56
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCC-CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+||+||++.++ ..|++||+.++..... ..+++.+.++..++.+..+ ....+|||||||||+|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD---------SSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc---------CChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999887 5799999988642110 1122233333333322221 22367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|++|||||||++||+.+...+.+.|+++.+ .|+|||++|||++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLA---QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999999864 37899999999999865 99999999999999999988754
No 250
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-47 Score=358.03 Aligned_cols=212 Identities=25% Similarity=0.417 Sum_probs=173.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 48999999999632 369999999999999999999999999999999999999999999999998742 1123469
Q ss_pred EEEccCCcC---ccccHHHHHhcCCCC-----C-C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 211 GFVGQEPQL---LQMDIKSNIMYGCPK-----D-V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 211 ~~v~Q~~~l---~~~tv~eni~~~~~~-----~-~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
+|+||++.+ +..++++|+.++... . . ..+.+.++++..++.++.++.+ .+||||||||+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrv 151 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI---------GELSGGQKKRV 151 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHH
Confidence 999999865 345789998653210 0 0 1122344555556555443332 57999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.+++.+.+.|.++++ +|+|||++||+++.+.. ||+++++ +|++++.|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD---EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 999999999999999999999999999999999999863 37899999999998865 9999777 899999999998
Q ss_pred Hhh
Q 017091 358 LLH 360 (377)
Q Consensus 358 l~~ 360 (377)
+.+
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
No 251
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-47 Score=395.95 Aligned_cols=226 Identities=30% Similarity=0.474 Sum_probs=185.2
Q ss_pred cEEEEEEEEEcCCC--------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC
Q 017091 131 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 202 (377)
.|+++||++.|+.. ....+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999621 0136999999999999999999999999999999999999999999999999987665
Q ss_pred HH---HHhcceEEEccCC--cCc-cccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCC
Q 017091 203 IR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL 269 (377)
Q Consensus 203 ~~---~~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~-~~~-~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~ 269 (377)
.. .++++|+||||++ .++ ..||.||+.++.. ... . .+++.+.++.+++. +..++.| .+
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~ 463 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE 463 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence 33 3567899999998 366 5799999975321 011 1 12334455555552 3344443 67
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++ .|.|||+||||++.+.. ||||++|++|+
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD--FGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998653 47899999999999976 99999999999
Q ss_pred EEEEcChHHHhhc-CHHHHH
Q 017091 349 IIEVGNHAELLHK-GRLYAK 367 (377)
Q Consensus 349 i~~~g~~~~l~~~-~~~~~~ 367 (377)
|++.|++++++.+ ...|.+
T Consensus 542 iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEEecCHHHHhcCCCCHHHH
Confidence 9999999999764 234544
No 252
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=354.29 Aligned_cols=220 Identities=27% Similarity=0.397 Sum_probs=180.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 203 (377)
.+.++++++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999964 3699999999999999999999999999999999999986 799999999998542 33
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
..+++.++|+||++.+|..|+.||+.++.... ...+.+.++++..++.+.+.... .....+|||||+||++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-----~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL-----KVSGLSLSGGQQQRLC 159 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhh-----hCCcccCCHHHHHHHH
Confidence 35677899999999988999999998753211 11223444555555433222110 1123579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe--------CCEEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--------DGRII 350 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~--------~G~i~ 350 (377)
|||||+++|++|||||||++||+.++..+.+.|++++ ++.|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK----KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 9999999999999999999999999999999999984 35799999999998865 99999996 89999
Q ss_pred EEcChHHHhhcC
Q 017091 351 EVGNHAELLHKG 362 (377)
Q Consensus 351 ~~g~~~~l~~~~ 362 (377)
+.|+++++++..
T Consensus 236 ~~g~~~~~~~~~ 247 (261)
T PRK14263 236 EMGPTAQIFQNP 247 (261)
T ss_pred EeCCHHHHHhCC
Confidence 999999997653
No 253
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=355.22 Aligned_cols=220 Identities=30% Similarity=0.432 Sum_probs=178.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC----
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD---- 200 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~---- 200 (377)
+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 45999999999974 3699999999999999999999999999999999999975 79999999987642
Q ss_pred CCHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCC-----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 201 ~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
.....+++.++|+||++.+|..|++||+.++.. .... ++.+..+++.+++.+.+.... ......|||||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-----~~~~~~LS~G~ 166 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRL-----GDLAFNLSGGQ 166 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHH-----hCCcccCCHHH
Confidence 233456788999999999987899999986521 0111 123334444443321111100 01125799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|+++||||||++||+.+.+.+.+.|++++ ++.|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK----NKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----hCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999884 25799999999999865 9999999999999999
Q ss_pred ChHHHhhc
Q 017091 354 NHAELLHK 361 (377)
Q Consensus 354 ~~~~l~~~ 361 (377)
+++++...
T Consensus 243 ~~~~~~~~ 250 (265)
T PRK14252 243 ATDTIFIK 250 (265)
T ss_pred CHHHHHhC
Confidence 99998753
No 254
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-47 Score=334.80 Aligned_cols=171 Identities=34% Similarity=0.663 Sum_probs=156.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 4789999999743 5999999999999999999999999999999999999999999999999987654 45677899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
|+||++.+|. .|+.||+. ||||||||++|||||+.+|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 9999998875 69999973 799999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
+||||||++||+.++..+.+.|+++.+ +|.|+|++||+++.+.. ||++++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKK---EGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999864 37899999999999875 999999999974
No 255
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-47 Score=335.83 Aligned_cols=174 Identities=45% Similarity=0.699 Sum_probs=158.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC--HHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r~~ 209 (377)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999974 36999999999999999999999999999999999999999999999999987664 4566788
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
++|++|++.+| ..|++||+.+. ||||||||++|||||+.+|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 99999999887 57999998652 7999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
+++||||||++||+.++..+.+.|++++++ .++|+|++||+++.+.. ||++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQ--LGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998642 36899999999999975 99999999884
No 256
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.9e-47 Score=379.35 Aligned_cols=229 Identities=29% Similarity=0.428 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC----CCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~----~G~I~i~g~~i~~~~~~~ 205 (377)
.++++|+++.|..... .++++||||+|.+||++||||+|||||||+.++|+|++++. +|+|.++|.++..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975422 36999999999999999999999999999999999999987 899999999998877654
Q ss_pred H---h-cceEEEccCCc-Cc-c-ccHHHHHhcCCC--CCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 017091 206 L---R-EKIGFVGQEPQ-LL-Q-MDIKSNIMYGCP--KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 272 (377)
Q Consensus 206 ~---r-~~i~~v~Q~~~-l~-~-~tv~eni~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg 272 (377)
+ | +.|+||||+|. .+ + .||.+.|.-... ... ..++..+.++.+++.+-... ...+++|||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-------~~yPheLSG 157 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-------DRYPHQLSG 157 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-------ccCCcccCc
Confidence 3 2 56999999984 34 3 677776643111 111 12233344445544332222 123488999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.++ .|.++|+||||+..+.. ||||+||++|+++|
T Consensus 158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e--~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE--LGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH--cCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 69999999999999976 99999999999999
Q ss_pred EcChHHHhhcC-HHHHHH
Q 017091 352 VGNHAELLHKG-RLYAKL 368 (377)
Q Consensus 352 ~g~~~~l~~~~-~~~~~~ 368 (377)
.|++++++++. ..|.+.
T Consensus 236 ~G~~~~i~~~p~hpYT~~ 253 (539)
T COG1123 236 TGPTEEILSNPQHPYTRG 253 (539)
T ss_pred ecCHHHHHhccCCcccHH
Confidence 99999999863 345443
No 257
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-46 Score=347.18 Aligned_cols=207 Identities=29% Similarity=0.440 Sum_probs=166.8
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC---CCCCeEEECCEeCCCCCHHHHh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~r 207 (377)
+.++||++.|++.+ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997541 2579999999999999999999999999999999999999 99999999999875 24567
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC---C-CCHH----HHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK---D-VKNE----DIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~---~-~~~~----~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
+.++|+||++.+|+ .|++||+.++... . .... .... .++..++.+..+ .....|||||+||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qr 151 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG---------NLVKGISGGERRR 151 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc---------ccccCcCHHHHHH
Confidence 78999999998885 6999999864210 1 0111 0111 122222221111 1235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc-hhHH-hcCeEEEEeCCEEEEEc
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIK-AVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l-~~~~-~~d~v~~l~~G~i~~~g 353 (377)
++|||||+.+|+++||||||++||+.++..+.+.+.++.+ .+.|+|++||++ +.+. .||++++|++|++++.|
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR---RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998863 378999999998 4665 59999999999998765
No 258
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-46 Score=349.67 Aligned_cols=210 Identities=28% Similarity=0.464 Sum_probs=178.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECCc---eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 58999999999743 599999999999999999999999999999999999999999999987 2369
Q ss_pred EEEccCCcCcc---ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEPQLLQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+|+||++.++. .|+.+|+.+. .....+++.++++..++.++++..+ ..||||||||++||||++.+
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR--PGTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhcc--ccccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence 99999987753 4888988653 1233455667777788777666544 57999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCHHHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYA 366 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 366 (377)
|++|||||||++||+.++..+.+.|+++.++ .|.|||++||+++.+.. ||+|++|++ ++++.|+++++.+ ...+.
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~ 214 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRE--LDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFI 214 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHH
Confidence 9999999999999999999999999988642 37899999999999865 999999965 7999999998865 34455
Q ss_pred HHH
Q 017091 367 KLV 369 (377)
Q Consensus 367 ~~~ 369 (377)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 554
No 259
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-46 Score=332.71 Aligned_cols=171 Identities=61% Similarity=0.951 Sum_probs=157.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 136999999999999999999999999999999999999999999999999987776667778899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|+||++.+|+.|+.||+ ||||||||++||||++.+|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999887 7999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
||||||++||+.++..+.+.|.++. +++|+|++||+++.+..||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA----KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999884 3589999999999987799999999984
No 260
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.7e-47 Score=343.94 Aligned_cols=196 Identities=33% Similarity=0.503 Sum_probs=162.0
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHHhcc
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLREK 209 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~r~~ 209 (377)
++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4799999974 369999999999999999999999999999999999999999999999999754332 234678
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
++|++|++.+|. .|++||+.++... ... .+++.++++..++.+..++.+ .+||||||||++||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qr~~lara 148 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI---------YELSGGEQQRVALARA 148 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999885 7999999874211 111 223344555555544443332 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
|+.+|++|||||||++||+.+++.+.+.|+++.+ .|.|+|++||+++.+..||++++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELND---EGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999863 378999999999987779999875
No 261
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-47 Score=389.30 Aligned_cols=219 Identities=25% Similarity=0.413 Sum_probs=179.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999974 36999999999999999999999999999999999999999999999999997766543 3467
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-----CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK-----DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~-----~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
|+|+||++.++ ..|++||+.++... .. ...+. ...+.++++.+...........+|||||||||+|
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM-----RVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHH-----HHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 99999999887 57999999875321 00 11111 1123344444433211122236799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|+++..|+++++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999999864 37899999999999975 9999999999999999988765
Q ss_pred h
Q 017091 360 H 360 (377)
Q Consensus 360 ~ 360 (377)
.
T Consensus 234 ~ 234 (510)
T PRK09700 234 N 234 (510)
T ss_pred H
Confidence 3
No 262
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-47 Score=388.26 Aligned_cols=218 Identities=28% Similarity=0.432 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeCCCCCHHH-Hh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~r 207 (377)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+... .+
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5999999999974 3699999999999999999999999999999999999996 8999999999987665543 45
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+.+||+||++.++ ..|++||+.++.... ...++.. ..+.++++.+...........+|||||||||+|||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~ 156 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 7799999999887 579999998763211 1111111 11334454443322112223679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||+.+|++|||||||++||+.++..+.+.|.++.+ +|.|||+||||++.+.. ||+|++|++|+++..|+++++.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLKA---HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999999853 47899999999999875 9999999999999999987764
No 263
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=353.01 Aligned_cols=225 Identities=26% Similarity=0.458 Sum_probs=179.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC------EeCCCCCHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG------FPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g------~~i~~~~~~ 204 (377)
.|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 10 ~i~~~~~~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYINDK---AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCCc---eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 59999999999753 699999999999999999999999999999999999999997776665 555545555
Q ss_pred HHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CC-CHHH----HHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV-KNED----IEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~-~~~~----~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~Q 276 (377)
.+++.++|+||++.+|. .|+.||+.++... .. ..++ +..+++..++..++. +. ......|||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY------DRLNSPASQLSGGQQQ 160 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch------hhhcCCcccCCHHHHH
Confidence 67888999999999885 6999999875221 11 1111 223333333321110 01 1123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|+++||||||++||+.++..+.+.|.+++ ++.|||++||+++.+.. ||++++|++|++++.|++
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK----NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999884 25799999999999965 999999999999999999
Q ss_pred HHHhhcC-HHHHHH
Q 017091 356 AELLHKG-RLYAKL 368 (377)
Q Consensus 356 ~~l~~~~-~~~~~~ 368 (377)
+++.+.. ..|.+.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (257)
T PRK14246 237 NEIFTSPKNELTEK 250 (257)
T ss_pred HHHHhCCCcHHHHH
Confidence 9998653 234443
No 264
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=385.63 Aligned_cols=218 Identities=27% Similarity=0.389 Sum_probs=178.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999974 36999999999999999999999999999999999999999999999999986554433 3567
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
++|+||++.++ ..|++||+.++.... ....+.. ..+.++++.+...........+|||||||||+||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 99999999887 579999998763211 1111111 112344454433222222236899999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|+.+|++|||||||++||+.++..+.+.|+++++ .|.|||+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKS---QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999999864 37899999999999875 9999999999999999887764
No 265
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=359.85 Aligned_cols=219 Identities=29% Similarity=0.475 Sum_probs=177.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 45 ~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999975 369999999999999999999999999999999999986 6899999999988642 34
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-------------CC-----HHHHHHHHHHcCHHHHHHhCCCCccccc
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-------------VK-----NEDIEWAAKQAYVHEFILSLPCGYETLV 265 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-------------~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (377)
..+++.++|+||++.+|+.|++||+.++.... .. .+.+..+++.+++.+.+.. ....
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~ 196 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND-----RLDD 196 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH-----HhcC
Confidence 45677899999999988889999998752110 00 1122233333333211110 0011
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeE-EE
Q 017091 266 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRI-VV 343 (377)
Q Consensus 266 ~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v-~~ 343 (377)
...+|||||||||+|||||+++|++|||||||++||+.++..+.+.|+++++ +.|+|++||+++.+.. ||++ ++
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE----EYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhcCEEEEE
Confidence 2367999999999999999999999999999999999999999999999853 4799999999999865 9996 57
Q ss_pred EeCCEEEEEcChHHHhhc
Q 017091 344 IDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 344 l~~G~i~~~g~~~~l~~~ 361 (377)
|++|++++.|+++++++.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 899999999999998754
No 266
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.4e-46 Score=348.75 Aligned_cols=216 Identities=23% Similarity=0.367 Sum_probs=176.3
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|+++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 57788874 17999999999999999999999999999999999996 59999999999987776677778999
Q ss_pred EccCCcCc-cccHHHHHhcCCCCCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC-
Q 017091 213 VGQEPQLL-QMDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR- 286 (377)
Q Consensus 213 v~Q~~~l~-~~tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~- 286 (377)
+||++.++ ..|+++|+.++...... .+++.++++..++.+..++.+ ..||||||||++|||||+.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~ 144 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV---------NQLSGGEWQRVRLAAVVLQV 144 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcc
Confidence 99998655 78999999876321111 122334444445444333322 6799999999999999997
Q ss_pred ------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 287 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 287 ------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
+|++|||||||++||+.++..+.+.|+++.+ +|.|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 145 ~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 145 WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ---QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6799999999999999999999999999863 37899999999998865 9999999999999999999886
Q ss_pred hcCHHHHHHH
Q 017091 360 HKGRLYAKLV 369 (377)
Q Consensus 360 ~~~~~~~~~~ 369 (377)
... ..++.+
T Consensus 222 ~~~-~~~~~~ 230 (248)
T PRK03695 222 TPE-NLAQVF 230 (248)
T ss_pred Cch-HHHHHh
Confidence 532 334444
No 267
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.4e-46 Score=349.30 Aligned_cols=212 Identities=25% Similarity=0.329 Sum_probs=172.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999974 3599999999999999999999999999999999998 6899999999999988766554443
Q ss_pred -ceEEEccCCcCcc-ccHHHHHhcCCCCC--------CCH----HHHHHHHHHcCHH-HHHHhCCCCcccccCCC-CCCh
Q 017091 209 -KIGFVGQEPQLLQ-MDIKSNIMYGCPKD--------VKN----EDIEWAAKQAYVH-EFILSLPCGYETLVDDD-LLSG 272 (377)
Q Consensus 209 -~i~~v~Q~~~l~~-~tv~eni~~~~~~~--------~~~----~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~-~LSg 272 (377)
.++|++|++.++. .|+.+|+.++.... ... +.+.++++..++. ..+++. .. .|||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~~LSg 154 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN---------VNEGFSG 154 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc---------cccCCCH
Confidence 5899999998884 68999987542110 010 1112223333332 111111 23 4999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEE
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRII 350 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~ 350 (377)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ .|.|||++||+++.+.. ||++++|++|+++
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT---SENSIILITHYQRLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999863 37899999999999864 8999999999999
Q ss_pred EEcChHH
Q 017091 351 EVGNHAE 357 (377)
Q Consensus 351 ~~g~~~~ 357 (377)
+.|+++.
T Consensus 232 ~~~~~~~ 238 (252)
T CHL00131 232 KTGDAEL 238 (252)
T ss_pred EecChhh
Confidence 9999874
No 268
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.8e-46 Score=383.08 Aligned_cols=213 Identities=23% Similarity=0.283 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 58999999999753 599999999999999999999999999999999999999999999999887665555566779
Q ss_pred EEEccCCcC--c-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 211 GFVGQEPQL--L-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 211 ~~v~Q~~~l--~-------~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
+|++|++.+ + ..|+++|+.++. ...+++.++++..++.+..+..+ .+|||||||||+||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHH
Confidence 999998753 1 468888876531 12344556666666665554444 67999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||+||||++.+.. ||+|++|++|+++..|+++++.+
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ---SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999864 37899999999999876 99999999999999999988765
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
.
T Consensus 225 ~ 225 (490)
T PRK10938 225 Q 225 (490)
T ss_pred c
Confidence 3
No 269
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.8e-46 Score=348.10 Aligned_cols=195 Identities=29% Similarity=0.458 Sum_probs=157.5
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCcCc-cccH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI 224 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv 224 (377)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999986542 234567899998 556666 6899
Q ss_pred HHHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC
Q 017091 225 KSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299 (377)
Q Consensus 225 ~eni~~~~~-~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~ 299 (377)
+||+.+... .....++ +...++..++.+..+.. ...||||||||++|||||+.+|++|||||||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTP---------VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999875321 1111221 22233333433332222 256999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 300 LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||+.+++.+.+.|+++.++ .+.|||++||+++.+.. ||++++|++|++++.|
T Consensus 184 LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRE--RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCHHHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999998642 47899999999999865 9999999999998754
No 270
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-46 Score=337.99 Aligned_cols=193 Identities=24% Similarity=0.400 Sum_probs=161.6
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC---CCCCeEEECCEeCCCCCHHHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 206 (377)
.+.++||+|.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999753 24579999999999999999999999999999999999999 89999999999987653 345
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++.++|++|++.+| ..|++||+.++... . .+.. ...||||||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------~-----------~~~~---------~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC-------K-----------GNEF---------VRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh-------c-----------cccc---------hhhCCHHHHHHHHHHHHHh
Confidence 67899999999877 47999999874210 0 1111 1469999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe-cCchhHH-hcCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA-HRLSTIK-AVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it-H~l~~~~-~~d~v~~l~~G~i~~~g 353 (377)
.+|++|||||||++||+.+++.+.+.|+++.++ .+.|+|+++ |+.+.+. .||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADV--LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998642 255666655 5567775 59999999999998754
No 271
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.4e-46 Score=336.22 Aligned_cols=196 Identities=23% Similarity=0.362 Sum_probs=166.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||++.|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDGR---ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCCc---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 4789999999753 6999999999999999999999999999999999999999999999999876433 45677899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
|++|++.++ ..|++||+.+... ....+++.++++..++.++.+..+ .+||||||||++|||||+.+|++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRPV---------AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCch---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999876 6899999987532 223445566667677665443332 57999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVI 344 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l 344 (377)
+||||||++||+.+++.+.+.|+++++ .|.|+|++||+...+. .|++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCA---RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998753 4789999999988775 58999877
No 272
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.8e-46 Score=337.41 Aligned_cols=196 Identities=22% Similarity=0.375 Sum_probs=161.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....++++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999974 369999999999999999999999999999999999999999999999998864 3345678899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
|++|++.++ ..|++||+.++.........+.+.++..++.+..+. ...+|||||+||++||||++.+|++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY---------PCGLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC---------ChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 689999998753111112233334444433332221 1257999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
|||||||++||+.+++.+.+.|+++++ .|.|+|++||+.+.+..||.-++
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEHRA---KGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHH---cCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999998853 47899999999999988987543
No 273
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.6e-46 Score=332.06 Aligned_cols=173 Identities=30% Similarity=0.558 Sum_probs=156.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 209 (377)
.|+++|++++| +|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...+++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999988 7999999999999999999999999999999999999999999999999887653 345778
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++|+||++ .++ ..|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 344 5799999976410 7999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
.+|++|||||||++||+.+++.+.+.++++.+ ++.|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELAD---AGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999853 37899999999999876 999999999974
No 274
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.8e-46 Score=335.28 Aligned_cols=184 Identities=35% Similarity=0.574 Sum_probs=161.1
Q ss_pred cEEEEEEEEEcCCCC---CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~ 205 (377)
.|+++||+|+|++.. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 389999999997520 146999999999999999999999999999999999999 9999999999998864 25
Q ss_pred HhcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 206 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
.++.++|+||++.+|. .|++||+.++.. . ..||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------~--------------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------L--------------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------h--------------------------ccCCHHHHHHHHHHHHH
Confidence 5678999999998874 799999975310 0 04999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-hHH-hcCeEEEEeCCEEEEEc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIK-AVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~-~~~-~~d~v~~l~~G~i~~~g 353 (377)
+.+|+++||||||++||+.+++.+.+.|+++.+ +|+|+|++||+++ .+. .||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD---TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999853 3789999999997 565 49999999999998654
No 275
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.3e-46 Score=337.48 Aligned_cols=197 Identities=21% Similarity=0.320 Sum_probs=167.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 789999999974 36999999999999999999999999999999999999999999999999986543 34567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-C-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
|++|++.++ ..|+.||+.++... . ...+++.++++..++.++.+..+ ..||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV---------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 999999877 47999999765321 1 22345566677777766554433 579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhc-CeEEEE
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVI 344 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~-d~v~~l 344 (377)
+++||||||++||+.+++.+.+.|+++++ .+.|+|++||+++++..| +|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAE---QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998853 378999999999999764 678776
No 276
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.2e-46 Score=345.11 Aligned_cols=193 Identities=32% Similarity=0.466 Sum_probs=160.9
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHH
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI 228 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~eni 228 (377)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++|++.+|. .|+.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999865432 2489999998885 7999999
Q ss_pred hcCCC---CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCC
Q 017091 229 MYGCP---KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301 (377)
Q Consensus 229 ~~~~~---~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD 301 (377)
.++.. ...... .+.+.++..++.+..++.+ .+||||||||++|||||+.+|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 76421 111111 2334455555554444333 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
+.+++.+.+.|.++.++ .|+|||+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 147 ~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEE--HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999988642 37899999999999865 999999999999999887665
No 277
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-47 Score=329.90 Aligned_cols=224 Identities=26% Similarity=0.451 Sum_probs=194.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+++|+++ .+|+++|++|++|.+++|+|||||||||||.+++++.++++|+|+++|.++..++.+++.+.+
T Consensus 1 MI~i~nv~K~y~~~---~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 1 MITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CeeehhhhHhhCCE---EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 37899999999864 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC----CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD----VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~----~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+.+-|+.++- ..||+|-+.||+.+. .+ ...+.++++...+.++-+++- .+||||||||.-||.
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL---------d~LSGGQrQRAfIAM 148 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL---------DELSGGQRQRAFIAM 148 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH---------Hhcccchhhhhhhhe
Confidence 9999998875 789999999986321 11 223445555555555444433 469999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.++++.+.++||||.++||.+....+++.++++.++ -|+||++|-||++++.. +|+|+-|++|+++.+|+++++++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e--l~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHH--hCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999999999999999875 58999999999999975 999999999999999999999875
Q ss_pred CHHHHHHH
Q 017091 362 GRLYAKLV 369 (377)
Q Consensus 362 ~~~~~~~~ 369 (377)
+ ...++|
T Consensus 227 ~-~L~eiy 233 (252)
T COG4604 227 E-ILSEIY 233 (252)
T ss_pred H-HHHHHh
Confidence 4 344444
No 278
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-46 Score=388.83 Aligned_cols=220 Identities=25% Similarity=0.419 Sum_probs=177.3
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC----------
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---------- 199 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~---------- 199 (377)
.|+++|++++|+... ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996421 236999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEccCC--cCc-cccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHH---HHHHhCCCCccc
Q 017091 200 DLDIR---WLR-EKIGFVGQEP--QLL-QMDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVH---EFILSLPCGYET 263 (377)
Q Consensus 200 ~~~~~---~~r-~~i~~v~Q~~--~l~-~~tv~eni~~~~~~--~~~~----~~~~~~~~~~~l~---~~~~~~~~~~~~ 263 (377)
..+.. .+| +.||||+|+| .++ ..||.||+.++... .... +++.++++.+++. ..+++.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~------ 165 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRY------ 165 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCC------
Confidence 12222 233 4799999998 566 47999999874211 1111 2233344444442 122222
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEE
Q 017091 264 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV 342 (377)
Q Consensus 264 ~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~ 342 (377)
..+|||||||||+|||||+.+|++|||||||++||+.+++++.++++++.++ .|+|||+||||++.+.. ||||+
T Consensus 166 ---~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~--~g~tvi~itHdl~~~~~~adri~ 240 (623)
T PRK10261 166 ---PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE--MSMGVIFITHDMGVVAEIADRVL 240 (623)
T ss_pred ---CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEE
Confidence 3679999999999999999999999999999999999999999999998642 48899999999999865 99999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 017091 343 VIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 343 ~l~~G~i~~~g~~~~l~~~ 361 (377)
+|++|++++.|++++++..
T Consensus 241 vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 241 VMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred EeeCCeecccCCHHHhhcC
Confidence 9999999999999998753
No 279
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.1e-46 Score=331.80 Aligned_cols=179 Identities=37% Similarity=0.583 Sum_probs=156.9
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999974 369999999999999999999999999999999999999999999999999987777677778999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 017091 213 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 292 (377)
Q Consensus 213 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ill 292 (377)
+|| +++..++.++++..+ ..||||||||++||||++.+|+++|
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~~~---------~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADRPF---------NELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998 334445554444333 5699999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 293 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 293 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||||++||+.+.+.+.+.|.+++++ .+.|+|++||+++.+.. ||++++|++|++++.|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARE--RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998642 26899999999999855 9999999999998653
No 280
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.3e-45 Score=334.08 Aligned_cols=186 Identities=32% Similarity=0.470 Sum_probs=162.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHH-hc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r~ 208 (377)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999974 3699999999999999999999999999999999999 58999999999999987765443 45
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
.++|+||++.+++ .++++|+ ...+ ..||||||||++||||++.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~~---------~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RYVN---------EGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hhcc---------ccCCHHHHHHHHHHHHHhcC
Confidence 6999999998875 4666654 1111 35999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH--hcCeEEEEeCCEEEEEcChHHHh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK--AVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~--~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|+++||||||++||+.+...+.+.|.++.+ +++|+|++||+++.+. .||++++|++|++++.|+ .++.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~-~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLRE---EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc-HHHH
Confidence 999999999999999999999999999853 3789999999999987 599999999999999994 4443
No 281
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.1e-45 Score=344.95 Aligned_cols=221 Identities=26% Similarity=0.312 Sum_probs=168.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEECCEeCCCCCHHHHh-c
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR-E 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~r-~ 208 (377)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 35999999999999999999999999999999999995 69999999999988766655443 5
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCC--CC-CHHHHHHHHHHcCHHHHHHhC--CCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPK--DV-KNEDIEWAAKQAYVHEFILSL--PCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|++|++.++. .|..+++.+.... .. ..+..........+.+.++.+ |.++.+......||||||||++|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 6999999997763 4555554321100 00 000000000001122233332 2122222112369999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEcChHHH
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g~~~~l 358 (377)
|++.+|++|||||||++||+.+++.+.+.|+++++ .++|||++|||++.+.. ||+|++|++|++++.|+++.+
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999998863 37899999999999875 799999999999999998754
No 282
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.6e-46 Score=381.65 Aligned_cols=220 Identities=30% Similarity=0.453 Sum_probs=177.6
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 204 (377)
+|+++|++++|++. ..+++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 124699999999999999999999999999999999999987 799999999998766543
Q ss_pred H---Hh-cceEEEccCCc--Cc-cccHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 017091 205 W---LR-EKIGFVGQEPQ--LL-QMDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 268 (377)
Q Consensus 205 ~---~r-~~i~~v~Q~~~--l~-~~tv~eni~~~~--~~~~~----~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~ 268 (377)
. .| +++||+||++. ++ ..|+.+|+.+.. ..... .+++.++++..++.+ ..++. ..
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~ 155 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDY---------PH 155 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhC---------Cc
Confidence 2 23 57999999985 44 468999986421 00111 122334444444422 12222 26
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++++++ .|+|||+||||++.+.. ||||++|++|
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE--LNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 79999999999999999999999999999999999999999999998642 37899999999999875 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 017091 348 RIIEVGNHAELLHK 361 (377)
Q Consensus 348 ~i~~~g~~~~l~~~ 361 (377)
++++.|++++++..
T Consensus 234 ~i~~~g~~~~~~~~ 247 (529)
T PRK15134 234 RCVEQNRAATLFSA 247 (529)
T ss_pred EEEEeCCHHHHhhC
Confidence 99999999988654
No 283
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-46 Score=333.58 Aligned_cols=183 Identities=25% Similarity=0.475 Sum_probs=159.6
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEECCEeCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
.|+++|+++.|++.. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 146999999999999999999999999999999999986 489999999999875 3456
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+.++|++|++.+|. .|++||+.++.. .+ .||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------~~----------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-----------LR----------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-----------Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence 78999999998875 699999986310 00 499999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-H-HhcCeEEEEeC-CEEEEEc
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDD-GRIIEVG 353 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~-~~~d~v~~l~~-G~i~~~g 353 (377)
+|++|||||||++||+.++..+.+.|+++++ .|+|+|++||+++. + ..||++++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLAD---SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH---cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998863 37899999999984 5 45999999999 9998764
No 284
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-47 Score=321.56 Aligned_cols=205 Identities=27% Similarity=0.468 Sum_probs=171.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++++.+.-+ +.++|+|+||++.+||+++|+||||||||||+|+++-+.+|++|+++|.|++++.+++..+|++|+
T Consensus 4 le~kq~~y~a~---~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs 80 (223)
T COG4619 4 LELKQVGYLAG---DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS 80 (223)
T ss_pred hHHHHHHhhcC---CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHH
Confidence 44555543333 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCccccHHHHHhcCCC---CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCP---KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
|+.|.|.||..||+||+.|+.. .........+.++++++.+.+-.. ...+||||||||++|+|-|..-|
T Consensus 81 Y~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k--------~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 81 YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTK--------NITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcc--------hhhhccchHHHHHHHHHHhhcCC
Confidence 9999999999999999988631 112223333344444433322111 12579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH-HhcCeEEEEeCCEE
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 349 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-~~~d~v~~l~~G~i 349 (377)
+|||||||||+||+.+.+.|.++|.++.++ ++..+++||||.+.. +.+|+++-+..|.+
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~--q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVRE--QNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhh--hceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999999999999999999998753 578999999999984 66999999999876
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-46 Score=379.61 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=175.4
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcceEE
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGF 212 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~ 212 (377)
++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+++.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999974 369999999999999999999999999999999999999999999999999875544 335678999
Q ss_pred EccCCcCc-cccHHHHHhcCCCC--C--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 213 VGQEPQLL-QMDIKSNIMYGCPK--D--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 213 v~Q~~~l~-~~tv~eni~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+||++.++ ..|++||+.++... . ....+.. ..+.++++.+...........+|||||||||+|||||+.+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 99999776 67999999875321 1 1111111 1233444444322111222367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|++|||||||++||+.+...+.+.|+++.+ .|.|||+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKE---RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999999853 47899999999999865 9999999999999999987763
No 286
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-46 Score=380.48 Aligned_cols=214 Identities=28% Similarity=0.425 Sum_probs=175.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 209 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..++++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 5899999999974 359999999999999999999999999999999999999999999999999865443 345678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|+|+||++.++ ..|+.||+.++.... ....+.. ..+.++++.+...........+||||||||++|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 99999999887 479999998853211 1111111 1233445554332111222367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
+.+|++|||||||++||+.+.+.+.+.|+++.+ .|+|||+||||++.+.. ||+|++|++|+++..++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRA---EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999853 47899999999999865 999999999999877654
No 287
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.3e-46 Score=382.22 Aligned_cols=219 Identities=30% Similarity=0.502 Sum_probs=178.4
Q ss_pred cEEEEEEEEEcCCC--------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC
Q 017091 131 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 202 (377)
.|+++|++++|+.. .++++|+|+||+|++||+++|+||||||||||+|+|+|++ |++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 59999999999621 1246999999999999999999999999999999999999 59999999999987655
Q ss_pred HH---HHhcceEEEccCC--cCc-cccHHHHHhcCCCCC---CC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCC
Q 017091 203 IR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCPKD---VK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDD 268 (377)
Q Consensus 203 ~~---~~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~~~---~~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 268 (377)
.. .++++++|+||++ .++ ..|+.||+.++.... .. .+.+.+.++..++. +..++. ..
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY---------PA 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC---------Cc
Confidence 43 2466799999997 356 579999998642100 11 12233344444442 222322 36
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++++++ .|+|||+||||++.+.. ||+|++|++|
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK--HQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 79999999999999999999999999999999999999999999998642 37899999999999875 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 017091 348 RIIEVGNHAELLHK 361 (377)
Q Consensus 348 ~i~~~g~~~~l~~~ 361 (377)
++++.|+++++++.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999764
No 288
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-46 Score=315.15 Aligned_cols=215 Identities=30% Similarity=0.485 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC--CCC----HH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLD----IR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~----~~ 204 (377)
.|+++|++|.|+.. ++|.||+|+.+.||.+.++||||+|||||+|.|.=+.-|.+|+..|.|...+ ..+ ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48999999999864 6999999999999999999999999999999999999999999999886542 222 34
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcC------CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 205 WLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~-~~tv~eni~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
++|+.+|+|||..+|+ .+||.||+.-. ...+....+..+.+++..+.++.+++|. .|||||+||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl---------hlsggqqqr 149 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL---------HLSGGQQQR 149 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce---------ecccchhhh
Confidence 6889999999999998 68999998543 1111122334456677777778888774 599999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|++||||++|||+-..++.++|+++.. .|.|-++|||..+.++. |.+|+.|++|+|++.|++.
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~---tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh---cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999999999999974 59999999999999987 9999999999999999987
Q ss_pred HHhh
Q 017091 357 ELLH 360 (377)
Q Consensus 357 ~l~~ 360 (377)
.+-+
T Consensus 227 ~ft~ 230 (242)
T COG4161 227 CFTE 230 (242)
T ss_pred hccC
Confidence 6644
No 289
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.2e-45 Score=341.11 Aligned_cols=200 Identities=31% Similarity=0.439 Sum_probs=161.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC----CCCeEEECCEeCCCCCHHHHhcceEEEccCCc-Cc--c
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LL--Q 221 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~--~ 221 (377)
+++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++... ...++.++|++|++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999988643 222357999999985 34 3
Q ss_pred ccHHHHHhcCCCC-CC-C---HHHHHHHHHHcCHH---HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 017091 222 MDIKSNIMYGCPK-DV-K---NEDIEWAAKQAYVH---EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 293 (377)
Q Consensus 222 ~tv~eni~~~~~~-~~-~---~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illl 293 (377)
.|+.+|+.+.... .. . .+++.+.++..++. +..+. ....|||||||||+||||++.+|++|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK---------YPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhC---------ChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6999998643210 11 1 11233334444332 11221 1257999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 294 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||||++||+.+++.+.+.|++++++ .|+|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQL--FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999998642 37899999999999965 999999999999999999999754
No 290
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-45 Score=364.86 Aligned_cols=218 Identities=31% Similarity=0.429 Sum_probs=180.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.++++|++|+|++ .++|+||||++.+||++||+|+||||||||+|+|+|.|+|++|+|++||+++...++.+ ....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 5899999999985 47999999999999999999999999999999999999999999999999998777654 4567
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
|+.|+|+..|+ ++||.|||.+|..+.....-+.+..-.....+.++.+....+-.....+||.||||.|+||||+..++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999998 78999999988643221000111111112334455443321111112579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
+|||||||||+|+....+.+++.++++++ +|.++|+|||+++++.. ||||.||+||+.+...+
T Consensus 165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~---~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 165 RVLILDEPTAALTVKETERLFDLIRRLKA---QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999974 59999999999999976 99999999999998877
No 291
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-45 Score=335.72 Aligned_cols=198 Identities=24% Similarity=0.319 Sum_probs=163.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNEE---PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCCc---eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 58999999999753 599999999999999999999999999999999999999999999999988642 335579
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-CC-CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPK-DV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+|++|++.++. .|++||+.+.... .. ..+.....++..++.+..+.. ...||||||||++||||++.+
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTL---------VRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCC---------hhhCCHHHHHHHHHHHHHhcC
Confidence 99999998885 6999999764211 11 122233344444443333222 257999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
|+++||||||++||+.+++.+.+.++++.+ +|.|+|++|||++.+.. ||++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLR---GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998864 37899999999999965 999999864
No 292
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-45 Score=377.53 Aligned_cols=216 Identities=26% Similarity=0.436 Sum_probs=176.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeCCCCCHHH-Hhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~r~ 208 (377)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999964 3699999999999999999999999999999999999987 7999999999987665543 456
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iA 281 (377)
.++|+||++.++ ..|++||+.++.... ...++.. ..+.++++.+...... .....+|||||||||+||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence 799999999877 579999998753211 1111111 1233445554332111 122367999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||+.+|++|||||||++||+.+...+.+.|+++++ .|.|||+||||++.+.. ||+|++|++|+++..++++++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA---HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999863 48899999999999875 999999999999999987654
No 293
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-46 Score=339.70 Aligned_cols=197 Identities=34% Similarity=0.539 Sum_probs=171.9
Q ss_pred cEEEEEEEEEcCCCC------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
.++++|+++.|+... ...+++||||+|++||+++|||+||||||||-|+|+|+++|++|+|+++|+++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 589999999997432 136999999999999999999999999999999999999999999999999976654
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
.....+++.+.++.+++.+ ++.++| ++|||||+||++||||
T Consensus 82 -----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP---------helSGGQrQRi~IARA 123 (268)
T COG4608 82 -----------------------------KEERRERVLELLEKVGLPEEFLYRYP---------HELSGGQRQRIGIARA 123 (268)
T ss_pred -----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC---------cccCchhhhhHHHHHH
Confidence 1122455777788877644 667777 7899999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|+++++|||+|+||...+.++.+++.+++++ .|.|.++||||++.++. ||||.||..|+|+|.|+.++++.+.
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999999999999999999999999875 58999999999999987 9999999999999999999998763
Q ss_pred -HHHHHHH
Q 017091 363 -RLYAKLV 369 (377)
Q Consensus 363 -~~~~~~~ 369 (377)
..|.+.+
T Consensus 202 ~HpYTk~L 209 (268)
T COG4608 202 LHPYTKAL 209 (268)
T ss_pred CCHHHHHH
Confidence 4465543
No 294
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.8e-45 Score=322.26 Aligned_cols=163 Identities=36% Similarity=0.542 Sum_probs=147.9
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4789999999642 36999999999999999999999999999999999999999999999873 5799
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|++|++.+++.|++||+.++ . ..+||||||||++||||++.+|+++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-------------------------~---------~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-------------------------W---------DDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc-------------------------C---------CCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999988888999999763 1 1569999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCC
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 347 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G 347 (377)
||||||++||+.+++.+.+.++++ +.|+|++|||++....||++++|+++
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999999999999999999875 47999999999877679999999875
No 295
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.8e-45 Score=378.19 Aligned_cols=223 Identities=25% Similarity=0.421 Sum_probs=173.7
Q ss_pred cEEEEEEEEEcCC--CCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC-CEe---CCCCC--
Q 017091 131 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFP---LTDLD-- 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~--~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~-g~~---i~~~~-- 202 (377)
.|+++||+++|++ ...+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 112469999999999999999999999999999999999999999999996 643 33222
Q ss_pred -HHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-----ccccCCCCCChHHH
Q 017091 203 -IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-----ETLVDDDLLSGGQK 275 (377)
Q Consensus 203 -~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~LSgGq~ 275 (377)
...++++|+|+||++.++ ..|+.||+.++.......+... ..+.++++.+.... .......+||||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 123466799999999877 5799999975321111111100 11223333332211 00112367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
|||+|||||+.+|++|||||||++||+.+.+.+.+.|++++++ .|.|||+||||++.+.. ||++++|++|++++.|+
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998642 37899999999999875 99999999999999999
Q ss_pred hHHHhh
Q 017091 355 HAELLH 360 (377)
Q Consensus 355 ~~~l~~ 360 (377)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888754
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.7e-45 Score=319.89 Aligned_cols=160 Identities=36% Similarity=0.559 Sum_probs=147.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 210 (377)
|+++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..++.+
T Consensus 1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 4789999999753 699999999999999999999999999999999999999999999999998876653 456789
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
+|+|| ||||||||++||||++.+|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99998 799999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
+||||||++||+.+++.+.+.|+++.+ ++.|+|++|||++.+.. ||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRA---QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999853 37899999999998865 99999999999875
No 297
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-46 Score=323.18 Aligned_cols=209 Identities=30% Similarity=0.450 Sum_probs=175.0
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
.++.+++++.+|++.+ ..+|+|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.+||.++..-.. .
T Consensus 2 ~~l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----e 75 (259)
T COG4525 2 CMLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----E 75 (259)
T ss_pred ceeehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----c
Confidence 3578899999998763 569999999999999999999999999999999999999999999999999976432 3
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
-|.|||++.|+ -.++.||+.||.... ..+ +...+.+..+++.++-++++ .+||||||||+.||||
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i---------~qLSGGmrQRvGiARA 146 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI---------WQLSGGMRQRVGIARA 146 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce---------EeecchHHHHHHHHHH
Confidence 49999999988 589999999985321 111 22223344455544433333 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe--CCEEEEEcCh
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH 355 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~--~G~i~~~g~~ 355 (377)
|+-+|++|+||||+++||.-++++++++|.++.+. .|+.+++||||++++-. ++++++|+ .|+|++.-++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~--tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE--TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999999999999999999888764 58999999999999875 99999998 5899876544
No 298
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-46 Score=379.22 Aligned_cols=221 Identities=24% Similarity=0.412 Sum_probs=177.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-CCCCeEEECCEeCCCCCH-HHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDI-RWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~-~~~r~ 208 (377)
.|+++||++.|+..++.++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+. ...++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999953112469999999999999999999999999999999999998 599999999999865443 34567
Q ss_pred ceEEEccCC---cCc-cccHHHHHhcCCCCCC------CHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHH
Q 017091 209 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDV------KNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQR 277 (377)
Q Consensus 209 ~i~~v~Q~~---~l~-~~tv~eni~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QR 277 (377)
.++|+||++ .++ ..|+.||+.++..... .... ....+.++++.+... ........+||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRLKVKTASPELAIARLSGGNQQK 413 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence 799999996 355 5799999987521000 1111 111234455554331 11122246899999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||++||+.+++.+.+.|.++++ +|+|||++|||++.+.. ||++++|++|+++..|+++
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ---QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999999864 48899999999999875 9999999999999999888
Q ss_pred HHh
Q 017091 357 ELL 359 (377)
Q Consensus 357 ~l~ 359 (377)
++.
T Consensus 491 ~~~ 493 (506)
T PRK13549 491 NLT 493 (506)
T ss_pred cCC
Confidence 763
No 299
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-45 Score=347.34 Aligned_cols=225 Identities=31% Similarity=0.493 Sum_probs=192.3
Q ss_pred cEEEEEEEEEcCCCC--------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC
Q 017091 131 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 202 (377)
.++.+||...|+-+. ...++++|||++++||.+||||+||||||||-++|++++++. |+|.|+|+++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 599999999996432 145899999999999999999999999999999999999766 99999999999887
Q ss_pred HH---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC---CCC----CHHHHHHHHHHcCHHHH-HHhCCCCcccccCCC
Q 017091 203 IR---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP---KDV----KNEDIEWAAKQAYVHEF-ILSLPCGYETLVDDD 268 (377)
Q Consensus 203 ~~---~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~---~~~----~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 268 (377)
.+ .+|+++-.|||||+ |- .+||.+-|.-|.. +.. .++++.++++.+|++.- ..++| +
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP---------h 425 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP---------H 425 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------c
Confidence 65 46789999999996 32 5899998876642 111 24456667777777543 34555 7
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
++|||||||+|||||++.+|++++||||||+||..-+.++.++|++++++ .|.+-++||||+..++. ||+|+||++|
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k--~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK--HGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 89999999999999999999999999999999999999999999999874 68999999999999987 9999999999
Q ss_pred EEEEEcChHHHhhcC-HHHHH
Q 017091 348 RIIEVGNHAELLHKG-RLYAK 367 (377)
Q Consensus 348 ~i~~~g~~~~l~~~~-~~~~~ 367 (377)
+|+|+|+.++++++. ..|.+
T Consensus 504 kiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 504 KIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EEeeeCCHHHHhcCCCcHHHH
Confidence 999999999999874 34654
No 300
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.6e-45 Score=332.81 Aligned_cols=197 Identities=23% Similarity=0.327 Sum_probs=165.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~ 75 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEAC 75 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhc
Confidence 4899999999974 359999999999999999999999999999999999999999999999998642 22 67789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
+|++|++.++ ..|++||+.+... .....+++.++++..++.++.+..+ .+||||||||++||||++.+|
T Consensus 76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF---------GYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred EEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999988776 6899999976421 1122344556666666655443322 579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+++||||||++||+.+.+.+.+.|+++++ +|.|+|++||+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLA---QGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998753 37899999999999987 99988854
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.2e-45 Score=377.49 Aligned_cols=215 Identities=26% Similarity=0.423 Sum_probs=174.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEEC---------------
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYID--------------- 194 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~--------------- 194 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999964 36999999999999999999999999999999999997 7999999997
Q ss_pred --------CEeCC-------CCCH---HHHhcceEEEccC-CcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcC
Q 017091 195 --------GFPLT-------DLDI---RWLREKIGFVGQE-PQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAY 249 (377)
Q Consensus 195 --------g~~i~-------~~~~---~~~r~~i~~v~Q~-~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~ 249 (377)
|.++. ..+. ..+|+.++|+||+ +.+| ..|++||+.++.. .... .+++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 22221 1111 2346779999998 5666 4799999986421 1111 123344555555
Q ss_pred HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 017091 250 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329 (377)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it 329 (377)
+.+..++.+ .+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .|+|||+||
T Consensus 158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTS 226 (520)
T ss_pred ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEe
Confidence 554444433 679999999999999999999999999999999999999999999998542 478999999
Q ss_pred cCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 330 HRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 330 H~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
||++.+.. ||+|++|++|+++..|+++++..
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999875 99999999999999999888754
No 302
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.3e-45 Score=335.41 Aligned_cols=202 Identities=28% Similarity=0.421 Sum_probs=158.5
Q ss_pred EEEEEEEEEcCCC---C-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC--CE--eCCCCCH
Q 017091 132 VQFVNISFHYPSR---P-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GF--PLTDLDI 203 (377)
Q Consensus 132 i~~~~v~~~y~~~---~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~--g~--~i~~~~~ 203 (377)
|+++|++++|+.. . ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 1369999999999999999999999999999999999999999999998 42 5544443
Q ss_pred HH---H-hcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 017091 204 RW---L-REKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 273 (377)
Q Consensus 204 ~~---~-r~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgG 273 (377)
.. + ++.++|+||++.++ ..|+.||+.+... ..... +++.++++..++.+... .....+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--------~~~~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW--------HLPPATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh--------hCCcccCCHH
Confidence 32 2 45799999999887 5799999975321 11111 12222333333322111 1123679999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEE
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVI 344 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l 344 (377)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++ +|+|+|++||+++.+. .||+++.+
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA---RGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999999999853 3789999999999886 49999876
No 303
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.9e-46 Score=333.28 Aligned_cols=215 Identities=22% Similarity=0.481 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+++++|+++|++. .+++|+||++++|++.+++|||||||||.+|+|+|+++|++|+|.|+|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~k---~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDK---KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCce---eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 48999999999854 69999999999999999999999999999999999999999999999998864 346789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||+|.+.-|+ .+||.|.+.|... ......++. ..+..|++++...........+||.|.+|+|.+-.|++++|
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP 149 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP 149 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC
Confidence 9999999998 6899999987321 112222221 23455666654322222223579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+++|||||+|||||.+.+.+.+.+.++++ .|.|||++||+|+.++. ||+++.|++|+.|-+|+.+++.+
T Consensus 150 eLlILDEPFSGLDPVN~elLk~~I~~lk~---~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 150 ELLILDEPFSGLDPVNVELLKDAIFELKE---EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CEEEecCCccCCChhhHHHHHHHHHHHHh---cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999999999975 59999999999999987 99999999999999999999876
No 304
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=375.95 Aligned_cols=214 Identities=18% Similarity=0.339 Sum_probs=172.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 209 (377)
.|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 38999999999999999999999999999999999999999999999998865443 345678
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCC----------CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHH
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQ 274 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq 274 (377)
|||+||++ .++ ..|++||+.++.... ..... ....+.++++.+... ........+|||||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 99999984 466 579999998752100 01111 111233445554321 11122246799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++++ .|.|||+||||++.+.. ||++++|++|++++.+
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD---DGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999864 48899999999999865 9999999999999988
Q ss_pred ChHH
Q 017091 354 NHAE 357 (377)
Q Consensus 354 ~~~~ 357 (377)
+..+
T Consensus 492 ~~~~ 495 (510)
T PRK09700 492 TNRD 495 (510)
T ss_pred cCcc
Confidence 7633
No 305
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=6.1e-45 Score=328.98 Aligned_cols=195 Identities=24% Similarity=0.330 Sum_probs=161.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 478999999975 36999999999999999999999999999999999999999999999999887654 34567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|++|++.++ ..|+.||+.+.... ......+.++++..++.++++..+ .+||||||||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999998887 48999999764211 111234566677777766654433 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
++||||||++||+.+++.+.+.|.++.+ .|.|+|++||+...+ .|++++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLA---RGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999998853 478999999998543 2455543
No 306
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=6.9e-45 Score=326.48 Aligned_cols=176 Identities=31% Similarity=0.481 Sum_probs=146.1
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhcceEEEccCC--cCccc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEP--QLLQM 222 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~--~l~~~ 222 (377)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++.++|+||++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 369999999999999999999999999999999999999999999999998852 12335567899999998 46678
Q ss_pred cHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcC
Q 017091 223 DIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 297 (377)
Q Consensus 223 tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPt 297 (377)
|++||+.++.. ..... +++.++++..++.++.++.+ .+||||||||++|||||+.+|+++||||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987421 11121 23444555666655555444 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 298 s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
++||+.+++.+.+.|+++++ +|+|||++||+++.
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~---~~~tili~sH~~~~ 189 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRA---EGMTVVISTHDVDL 189 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHH---cCCEEEEEeecccc
Confidence 99999999999999999864 37899999999875
No 307
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-44 Score=336.90 Aligned_cols=212 Identities=23% Similarity=0.367 Sum_probs=169.1
Q ss_pred cEEEEEEEEEcCCC-----------------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 131 HVQFVNISFHYPSR-----------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-----------------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
.++++||++.|... ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47788888877431 1246999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHH----HHHHHcCHHHHHHhCCCCcccccCC
Q 017091 194 DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDD 267 (377)
Q Consensus 194 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (377)
+|. +++++|++.++ ..|+.+|+.++.. .....++.. ..++..++.++++.. .
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~ 141 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQP---------V 141 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------c
Confidence 984 45677777665 5799999975311 112222222 223333333333222 3
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
.+|||||+||++||||++.+|++|||||||++||+.+.+.+.+.|.++++ .|+|+|++||+++.+.. ||+|++|++
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~---~g~tiIiisH~~~~i~~~~d~i~~l~~ 218 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE---QNKTIFFVSHNLGQVRQFCTKIAWIEG 218 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence 67999999999999999999999999999999999999999999998853 47899999999999875 999999999
Q ss_pred CEEEEEcChHHHhhcCHHHHH
Q 017091 347 GRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 347 G~i~~~g~~~~l~~~~~~~~~ 367 (377)
|++++.|+++++.+....|.+
T Consensus 219 G~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 219 GKLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred CEEEEeCCHHHHHHHhHHHHH
Confidence 999999999998876444433
No 308
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.2e-44 Score=353.04 Aligned_cols=217 Identities=28% Similarity=0.452 Sum_probs=183.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
.+++++++|.||+ ..+++||||+|++||+.||+|+||||||||+++|.|+|+|++|+|++||+++.-.++. ..+..
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4899999999984 4799999999999999999999999999999999999999999999999998766664 56778
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||+|+|++.|+ +.||.|||.+|...... ..+.....+..+.+..++++...+-......||-||||||.|-+||+++|
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~-~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKG-GLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccc-cccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 99999999998 68999999998643211 00111112223455566665555444444679999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
++||||||||-|-|...+++++.++++++ .|+|||+|||.++++.. |||+-||++|+++...+
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~---~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAA---EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999975 59999999999999976 99999999999876554
No 309
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.7e-45 Score=371.49 Aligned_cols=224 Identities=22% Similarity=0.379 Sum_probs=174.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEECCEeCCCCCH-HHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDI-RWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~~~~-~~~r~ 208 (377)
.|+++|++++|+++.+..+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+. ..+++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999421123699999999999999999999999999999999999995 89999999999865433 45677
Q ss_pred ceEEEccCC---cCc-cccHHHHHhcCCCCCCCH-HHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~---~l~-~~tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq~QRv~iAr 282 (377)
++||+||++ .++ ..|+++|+.++....... ...........+.++++.+.... ........||||||||++|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 899999996 356 579999998752110000 00000001112344455543321 112223679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
||+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||++|||++.+.. ||++++|++|+++..++.++
T Consensus 417 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ---EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999864 47899999999999975 99999999999998876544
No 310
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-44 Score=356.80 Aligned_cols=213 Identities=25% Similarity=0.350 Sum_probs=172.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+++++|++|.|++...+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------~i 90 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------LI 90 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------eE
Confidence 58999999999764334699999999999999999999999999999999999999999999999751 12
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+ +.+.++ ..|++||+.+... .....++ +..+++.+++.++++..+ ..||||||||++|||||
T Consensus 91 ~---~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 91 A---ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV 158 (549)
T ss_pred E---eccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 2 233333 4799999976321 1122222 233455555555544433 67999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCH
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 363 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~ 363 (377)
+.+|++|||||||++||+.++..+.+.|.++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++...-.
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~---~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKE---QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 999999999999999999999999999998853 47899999999999875 99999999999999999999877644
Q ss_pred HHHHH
Q 017091 364 LYAKL 368 (377)
Q Consensus 364 ~~~~~ 368 (377)
.|.+.
T Consensus 236 ~~~~~ 240 (549)
T PRK13545 236 EFLKK 240 (549)
T ss_pred HHHHH
Confidence 44443
No 311
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.4e-44 Score=331.04 Aligned_cols=196 Identities=26% Similarity=0.450 Sum_probs=159.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC---ccccHHHHHhcC
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL---LQMDIKSNIMYG 231 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---~~~tv~eni~~~ 231 (377)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.+ +..|+.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 245679999999876 357999999765
Q ss_pred CCC------CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCH
Q 017091 232 CPK------DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302 (377)
Q Consensus 232 ~~~------~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~ 302 (377)
... .. ..+++..+++..++.++.+..+ .+||||||||++|||||+.+|+++||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV---------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 210 00 1123344455555544433322 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 303 ~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
.+++.+.+.|+++++ +|.|+|++||+++.+.. ||+++++ +|++++.|+++++.++. .+.+.+
T Consensus 147 ~~~~~l~~~l~~~~~---~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~-~~~~~~ 209 (223)
T TIGR03771 147 PTQELLTELFIELAG---AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA-PWMTTF 209 (223)
T ss_pred HHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH-HHHHHh
Confidence 999999999999863 37899999999998865 9999999 89999999999987653 344444
No 312
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.5e-44 Score=331.18 Aligned_cols=197 Identities=26% Similarity=0.355 Sum_probs=156.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+.++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 22 ~l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~ 93 (224)
T cd03220 22 KLGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGG 93 (224)
T ss_pred hhhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccc
Confidence 3788999999975 3699999999999999999999999999999999999999999999999875311 1111
Q ss_pred EEEccCCcCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++ ....|++||+.++.. ...... .+.++++..++.+.++.. ...||||||||++||||++
T Consensus 94 ~~------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 94 GF------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLP---------VKTYSSGMKARLAFAIATA 158 (224)
T ss_pred cC------CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHHh
Confidence 11 135799999976421 111111 122333333433333222 2579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|+++||||||++||+.+++.+.+.|+++.+ +|.|||++||+++.+.. ||++++|++|++++.|
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLK---QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999999865 9999999999998764
No 313
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-44 Score=322.61 Aligned_cols=190 Identities=22% Similarity=0.364 Sum_probs=157.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +.++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999964 2355 599999999999999999999999999999999999999999999875432 34599
Q ss_pred EEccCCcC-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
|++|++.+ +..|++||+.+........+.+..+++..++.+..++.+ .+||||||||++||||++.+|++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKC---------YSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccCh---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998765 478999999874321112334555556666655444332 57999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
+||||||++||+.+++.+.+.+++..+ .+.|+|++||+++.++.+|-+
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKAN---SGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCccccchhhee
Confidence 999999999999999999999986542 478999999999999888865
No 314
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.2e-44 Score=401.82 Aligned_cols=217 Identities=18% Similarity=0.379 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|+++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .....++.|
T Consensus 1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 59999999999752 2469999999999999999999999999999999999999999999999999864 344567789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|++||+.+... ..... +.+.+.++..++.++.++.+ ..||||||||++|||||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999888 5899999975311 11111 22334555666655554443 57999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|+||||||||+|||+.+++.+++.|+++++ +|+|||++||++++++. ||||++|++|+++..|+++++.++
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~---~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR---EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999999864 48899999999999976 999999999999999999998543
No 315
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-44 Score=328.93 Aligned_cols=201 Identities=29% Similarity=0.516 Sum_probs=180.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHHhcceEEEccCCcCc-cccH
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~v~Q~~~l~-~~tv 224 (377)
-=+++|+.+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||.-+.+.. ...-+++|||||||..|| .+||
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 34788998887899999999999999999999999999999999998775432 223467899999999999 6899
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
+.|+.||.+. .+..+..+..+..++..+++++| ..|||||||||+|+|||+..|++||+|||.|+||...
T Consensus 94 rgNL~YG~~~-~~~~~fd~iv~lLGI~hLL~R~P---------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 94 RGNLRYGMWK-SMRAQFDQLVALLGIEHLLDRYP---------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ecchhhhhcc-cchHhHHHHHHHhCcHHHHhhCC---------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 9999999653 35667778888999999999999 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 305 ~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+++++-.|++++++ -+.-|++|||.++++.+ ||+|++|++|++.+.|..++++...
T Consensus 164 K~EilpylERL~~e--~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 164 KREILPYLERLRDE--INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hhHHHHHHHHHHHh--cCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999875 47889999999999876 9999999999999999999998754
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.8e-44 Score=400.58 Aligned_cols=216 Identities=24% Similarity=0.400 Sum_probs=182.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||++.|+++ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. .....|+.+
T Consensus 928 ~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 928 GVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred eEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 59999999999632 2469999999999999999999999999999999999999999999999999864 345667889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.+| ..||+||+.+... .... .+++.+.++..++.+..++. ..+|||||||||+|||||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~---------~~~LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEE---------AQDLSGGMQRKLSVAIAF 1076 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHHHHHHHHH
Confidence 9999999888 5799999986421 1111 12233444444444433332 267999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+|||+.+++.+.+.|++++ +|+|||++||+++++.. ||||++|++|+++..|+++++.++
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~----~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999983 37899999999999976 999999999999999999988653
No 317
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.1e-44 Score=365.82 Aligned_cols=213 Identities=24% Similarity=0.436 Sum_probs=172.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .++++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 588999973 279999999999999999999999999999999999999999999999998765543 35678
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHH
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQR 277 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QR 277 (377)
+||+||++ .++ ..|+.||+.++.... ....+ ....+.++++.+... .........||||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD-----EQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH-----HHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence 99999997 355 589999998742100 01111 011234455554321 11122236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +|.|||++|||++.+.. ||+|++|++|+++..|+++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA---EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999999864 38899999999999875 9999999999999999887
Q ss_pred HHh
Q 017091 357 ELL 359 (377)
Q Consensus 357 ~l~ 359 (377)
++.
T Consensus 481 ~~~ 483 (501)
T PRK10762 481 QAT 483 (501)
T ss_pred cCC
Confidence 763
No 318
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=369.81 Aligned_cols=217 Identities=35% Similarity=0.492 Sum_probs=182.0
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH---
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~--- 206 (377)
+|+++|++++|++. ..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+..++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999642 12469999999999999999999999999999999999999999999999999987765543
Q ss_pred -hcceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 -REKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 -r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++.++|+||++.+| ..|+.||+.+.... ... .++..+.++..++.+.++..+ .+|||||+||++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~ 154 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS 154 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence 56899999999988 47999999763210 111 112233444445444444333 679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHh
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|||||+++|++|||||||++||+.+++.+.+.++++++ +|+|+|++||+++.+..||++++|++|++++.|++++..
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~---~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD---RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999999863 478999999999988789999999999999999998775
No 319
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-44 Score=364.09 Aligned_cols=214 Identities=24% Similarity=0.362 Sum_probs=172.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 209 (377)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...++.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999731 38999999999999999999999999999999999999999999999998865433 345678
Q ss_pred eEEEccCCc---Cc-cccHHHHHhcCCCCCC-------CHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHH
Q 017091 210 IGFVGQEPQ---LL-QMDIKSNIMYGCPKDV-------KNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQR 277 (377)
Q Consensus 210 i~~v~Q~~~---l~-~~tv~eni~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QR 277 (377)
++|+||++. +| ..|+.||+.++..... .... ....+.++++.+... ........+||||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRW-----EAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHH-----HHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 999999973 55 6899999987532110 1100 011233445554321 11122246899999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||+|||+.+++.+.++|.++.+ .|.|||+||||++.+.. ||++++|++|+++..|+++
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA---QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELARE 481 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999864 47899999999999965 9999999999999999887
Q ss_pred HHh
Q 017091 357 ELL 359 (377)
Q Consensus 357 ~l~ 359 (377)
+..
T Consensus 482 ~~~ 484 (501)
T PRK11288 482 QAT 484 (501)
T ss_pred cCC
Confidence 654
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-43 Score=361.33 Aligned_cols=202 Identities=22% Similarity=0.379 Sum_probs=168.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 59999999999743 5999999999999999999999999999999999999999999999873 469
Q ss_pred EEEccCCc--Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
||++|++. ++ ..|+.+|+.+........+++...++..++ .+..+..+ .+||||||||++||||++.
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSV---------KVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcc---------cccCHHHHHHHHHHHHHhc
Confidence 99999974 44 479999986521111223344555555555 23333322 6799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHHhhc
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHK 361 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~~ 361 (377)
+|++|||||||++||+.+.+.+.+.|+++ +.|||+||||++.+.. ||++++|++|+++ ..|+++++++.
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY------EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999876 2499999999999876 9999999999998 77888887654
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-43 Score=361.37 Aligned_cols=209 Identities=24% Similarity=0.432 Sum_probs=165.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..||
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999974 36999999999999999999999999999999999999999999999872 3599
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC---------------CCCHH---HHHHH----------HHHcCHHHHHHhCCCCcc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK---------------DVKNE---DIEWA----------AKQAYVHEFILSLPCGYE 262 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~---------------~~~~~---~~~~~----------~~~~~l~~~~~~~~~~~~ 262 (377)
|++|++.++ ..|++||+.++... ..... .+.+. .....+.+.++.+.....
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 999999877 57999999864210 00000 00000 001123344554432211
Q ss_pred c-ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCe
Q 017091 263 T-LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 340 (377)
Q Consensus 263 ~-~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~ 340 (377)
. .....+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .|.|||+||||++.+.. ||+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE------RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh------CCCeEEEEeCCHHHHHhhcce
Confidence 1 112367999999999999999999999999999999999999999998863 26899999999999875 999
Q ss_pred EEEEeCCEEE-EEcChHHHhh
Q 017091 341 IVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 341 v~~l~~G~i~-~~g~~~~l~~ 360 (377)
|++|++|+++ ..|+++++++
T Consensus 222 i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 222 MADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEEEeCCEEEEecCCHHHHHH
Confidence 9999999994 7899887764
No 322
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.9e-43 Score=361.41 Aligned_cols=210 Identities=27% Similarity=0.423 Sum_probs=166.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+++|+++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ +..|
T Consensus 6 ~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 59999999999721 3699999999999999999999999999999999999999999999975 1369
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC---------------CCCHH----------HHHHHHH-------HcCHHHHHHhC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK---------------DVKNE----------DIEWAAK-------QAYVHEFILSL 257 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~---------------~~~~~----------~~~~~~~-------~~~l~~~~~~~ 257 (377)
|||||++.++ ..|+.||+.++... ..... ++.+..+ ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 9999999887 57999999875210 00000 0000010 11233444444
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 258 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 258 ~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
.... ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||++.+..
T Consensus 153 gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~------~~tviiisHd~~~~~~ 225 (556)
T PRK11819 153 RCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY------PGTVVAVTHDRYFLDN 225 (556)
T ss_pred CCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC------CCeEEEEeCCHHHHHh
Confidence 3221 12223679999999999999999999999999999999999999999999876 2499999999999976
Q ss_pred -cCeEEEEeCCEEE-EEcChHHHhh
Q 017091 338 -VDRIVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 338 -~d~v~~l~~G~i~-~~g~~~~l~~ 360 (377)
||+|++|++|+++ ..|+++++.+
T Consensus 226 ~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 226 VAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred hcCeEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999986 7788887654
No 323
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.5e-43 Score=360.24 Aligned_cols=215 Identities=19% Similarity=0.333 Sum_probs=172.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.|+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999983 1699999999999999999999999999999999999999999999999987665543 4567
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHH
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~i 280 (377)
|+|+||++ .+| ..|+.+|+.... ........ ....+.++++.+... .........|||||||||+|
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 99999985 356 579999985321 00001111 111234455554322 11122236799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||+||||++.+.. ||++++|++|+++..|+++++.
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA---QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999999864 37899999999999976 9999999999999999988775
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
.+
T Consensus 492 ~~ 493 (510)
T PRK15439 492 VD 493 (510)
T ss_pred HH
Confidence 43
No 324
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=5.1e-43 Score=339.32 Aligned_cols=184 Identities=32% Similarity=0.502 Sum_probs=154.5
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----
Q 017091 165 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN---- 238 (377)
Q Consensus 165 ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~---- 238 (377)
|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++++|+||++.+| ..|++||+.++... ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876554 356899999999988 57999999876321 1111
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+++.++++..++.++.++.| .+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 22334455555544444433 679999999999999999999999999999999999999999999998653
Q ss_pred CCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 319 CKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.|.|+|+||||++++.. ||+|++|++|++++.|+++++++.
T Consensus 150 --~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 150 --LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred --cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 47899999999999865 999999999999999999999865
No 325
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.7e-43 Score=366.54 Aligned_cols=202 Identities=27% Similarity=0.453 Sum_probs=164.8
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC--CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-ccc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 223 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~t 223 (377)
+++|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..++++|||+|++.++ ..|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 9999999998742 3456799999999988 579
Q ss_pred HHHHHhcCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCC--cccccC---CCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 017091 224 IKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVD---DDLLSGGQKQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 224 v~eni~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~---~~~LSgGq~QRv~iAral~~~p~illlD 294 (377)
|+||+.+.. +...+.++.. ..++++++.+... .++.++ ...||||||||++|||||+.+|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKI-----LVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998742 1112222211 1123344443321 244443 2579999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-H-HhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 295 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~-~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+|||+.++..+.+.|+++.+ +|+|||++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~---~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQ---KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999999864 48999999999984 5 4599999999999999999988753
No 326
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-42 Score=322.62 Aligned_cols=196 Identities=25% Similarity=0.373 Sum_probs=156.5
Q ss_pred EEcCCCCCCCceeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 139 FHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 139 ~~y~~~~~~~vL~~isl~i~-----~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
|+|++. ...+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 457643 347888888886 69999999999999999999999999999999999984 59999
Q ss_pred ccCCcC-ccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 214 GQEPQL-LQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 214 ~Q~~~l-~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
+|++.. +..|++||+.+..... .......+.++..++.+..++.+ .+|||||||||+|||||+.+|+++
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREV---------PELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999875 5789999997532111 11222344555555555444333 579999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE--EEcChHHHh
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVGNHAELL 359 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~--~~g~~~~l~ 359 (377)
||||||++||+.++..+.+.|+++.++ .++|||+||||++.+.. ||+|++|+++..+ ..++++++.
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAEN--NEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999998642 47899999999999975 9999999765433 445666654
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.9e-42 Score=354.90 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=166.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 48999999999722 3699999999999999999999999999999999999999999999875 1369
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC----------------CCCH---------HHHHHHHHHcC-------HHHHHHhC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK----------------DVKN---------EDIEWAAKQAY-------VHEFILSL 257 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~----------------~~~~---------~~~~~~~~~~~-------l~~~~~~~ 257 (377)
||+||++.++ +.|+.||+.++... .... .++.+.++..+ +.++++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 9999999887 57999999875210 0000 11222222222 22334443
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 258 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 258 ~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
.... ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||++.+..
T Consensus 151 ~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~------~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 151 RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------PGTVVAVTHDRYFLDN 223 (552)
T ss_pred CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC------CCeEEEEeCCHHHHHh
Confidence 3211 11223679999999999999999999999999999999999999999998875 2499999999999976
Q ss_pred -cCeEEEEeCCEEE-EEcChHHHhh
Q 017091 338 -VDRIVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 338 -~d~v~~l~~G~i~-~~g~~~~l~~ 360 (377)
||+|++|++|+++ ..|+++++.+
T Consensus 224 ~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 224 VAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred hcCeEEEEECCEEEEecCCHHHHHH
Confidence 9999999999976 6788887654
No 328
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-42 Score=327.69 Aligned_cols=228 Identities=30% Similarity=0.438 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 204 (377)
.++++|+++.|... ....++++|||+|++||.+||||+||||||-..+.++|+++. -+|+|.++|.++-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 58999999999632 235799999999999999999999999999999999999964 379999999999888877
Q ss_pred HHh----cceEEEccCCcCc--c-ccHHHHH----hcCC--CCCCCHHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 017091 205 WLR----EKIGFVGQEPQLL--Q-MDIKSNI----MYGC--PKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 268 (377)
Q Consensus 205 ~~r----~~i~~v~Q~~~l~--~-~tv~eni----~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~ 268 (377)
++| .+|+++||+|.-- + .||...| .+.. ......+++.+.++.+++.+ .++.+| +
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------H 156 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------H 156 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------c
Confidence 665 3699999999532 2 3655444 3321 11222344555666666533 344455 7
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||||||.||.||+.+|++||.||||.+||..-+.+|+++|++++++ .|.++++||||+..++. ||||+||.+|
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~--~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH--hCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 89999999999999999999999999999999999999999999999875 59999999999999987 9999999999
Q ss_pred EEEEEcChHHHhhc-CHHHHHHH
Q 017091 348 RIIEVGNHAELLHK-GRLYAKLV 369 (377)
Q Consensus 348 ~i~~~g~~~~l~~~-~~~~~~~~ 369 (377)
+++|.|+.++++.. ...|.+.+
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHH
Confidence 99999999999976 34576544
No 329
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.1e-42 Score=355.02 Aligned_cols=209 Identities=22% Similarity=0.319 Sum_probs=164.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEECCEeCCC-CCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTD-LDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~-~~~~~~r~ 208 (377)
.|+++|+++.|++. .+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++.. ......++
T Consensus 260 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYNDR---PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECCe---eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 59999999999743 599999999999999999999999999999999999876 79999999987632 22334567
Q ss_pred ceEEEccCCcCc-c--ccHHHHHhcCCCC------CCCH---HHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHH
Q 017091 209 KIGFVGQEPQLL-Q--MDIKSNIMYGCPK------DVKN---EDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~--~tv~eni~~~~~~------~~~~---~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
+|+|++|++.++ . .++.+++.++... .... +.+.+.++..++.+ ..+. ...+||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSgGq~ 407 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADA---------PFHSLSWGQQ 407 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccC---------chhhCCHHHH
Confidence 899999998654 2 4677776543110 0111 12233333443332 2222 2367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-h-cCeEEEEeCCEEEEEc
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-A-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~-~d~v~~l~~G~i~~~g 353 (377)
|||+|||||+.+|++|||||||+|||+.+.+.+.+.|++++++ .+.|||+||||++.+. . ||++++|++|++++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE--GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999998642 2357999999999986 3 7999999999998754
No 330
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=355.32 Aligned_cols=214 Identities=22% Similarity=0.375 Sum_probs=168.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
.|+++|+++.| +++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 59999999874 1499999999999999999999999999999999999999999999999998766543 34677
Q ss_pred eEEEccCCc---Cc-cccHHHHH-----hcCCCC-C-CCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHH
Q 017091 210 IGFVGQEPQ---LL-QMDIKSNI-----MYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQR 277 (377)
Q Consensus 210 i~~v~Q~~~---l~-~~tv~eni-----~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq~QR 277 (377)
++|+||++. +| ..|+.+|. .+.... . ....... ..+.++++.+..+. .......+||||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 999999863 45 46776663 221110 0 0111111 11233444443221 1122346899999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+||||++.+|+||||||||+|||+.+++.+.+.|.++.+ .|.|||++|||++.+.. |||+++|++|+++..++.+
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~---~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK---KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH---CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999864 47899999999999875 9999999999999888765
Q ss_pred H
Q 017091 357 E 357 (377)
Q Consensus 357 ~ 357 (377)
+
T Consensus 477 ~ 477 (491)
T PRK10982 477 T 477 (491)
T ss_pred c
Confidence 3
No 331
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.5e-43 Score=326.59 Aligned_cols=203 Identities=24% Similarity=0.288 Sum_probs=157.5
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-----------ECCEeCCCCCH
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 203 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~ 203 (377)
.||+|+|+++ ..+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|. ++|+++.....
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4789999743 259999995 999999999999999999999999999999999996 78888765432
Q ss_pred HHHh--cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 204 RWLR--EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 204 ~~~r--~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
...+ ..++|++|++.+++.++.+|+..........+...++++..++.+..+.. ..+||||||||++||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la 151 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRN---------IDQLSGGELQRVAIA 151 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHHHHHH
Confidence 2222 24789999887776566666654321111123334444444443333222 257999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||++.+|+++||||||++||+.++..+.+.|+++++ .++|||++||+++.+.. ||+|++|+ |++.+.|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE---DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999864 37899999999999975 99999995 6666543
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.7e-41 Score=291.43 Aligned_cols=143 Identities=35% Similarity=0.612 Sum_probs=133.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999984 3699
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|+|| ||+||+||++||||++++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9998 7999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
||||||++||+.++..+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999876 3599999999999965 99999999985
No 333
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.8e-41 Score=309.85 Aligned_cols=187 Identities=19% Similarity=0.251 Sum_probs=147.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-ECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 226 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 226 (377)
+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+. +.+++.+| ..|++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-------------~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------------LGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-------------cccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 7775321 23456666 479999
Q ss_pred HHhcCCC-CCCCHHHHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 227 NIMYGCP-KDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 227 ni~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
|+.+... .....++... ..+..++.+..+..+ ..||||||||++||||++.+|+++||||||+++|+.+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRV---------SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchH---------hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 9976421 1122222222 122233333332222 5699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 305 ~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
++.+.+.+.+.. +++|+|++||+++.+.. ||++++|++|++++.++.++..+.
T Consensus 140 ~~~~~~~l~~~~----~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 140 QLRMQAALACQL----QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL 193 (213)
T ss_pred HHHHHHHHHHHh----hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence 999999876542 24689999999999865 999999999999999998887643
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.6e-41 Score=350.00 Aligned_cols=195 Identities=25% Similarity=0.300 Sum_probs=164.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ ..+
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 5999999999964 25999999999999999999999999999999999999999999985 149
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
+|+||++.++ ..||+||+.++...........++++..++.+..++.+ .+|||||||||+|||||+.+|+
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~LSGGe~QRvaiAraL~~~p~ 473 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNV---------KDLSGGELQRVAIAACLSRDAD 473 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998765 78999999875221111223445666666665555444 6799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
+|||||||++||+.++..+.+.|+++.++ .|.|+|+||||++++.. |||+++|++ ++...|+
T Consensus 474 llLLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 474 LYLLDEPSAHLDVEQRLAVAKAIRRIAEE--REATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998643 47899999999999875 999999965 8877776
No 335
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=306.35 Aligned_cols=212 Identities=25% Similarity=0.419 Sum_probs=174.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLRE 208 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~ 208 (377)
..|+++||++.|+++ ++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+.....+. .++|+
T Consensus 30 ~li~l~~v~v~r~gk---~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECCE---eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 359999999999764 69999999999999999999999999999999999999999999999999987666 88999
Q ss_pred ceEEEccCCcC-c--cccHHHHHhcCC------CC-CCCHHH---HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 209 KIGFVGQEPQL-L--QMDIKSNIMYGC------PK-DVKNED---IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 209 ~i~~v~Q~~~l-~--~~tv~eni~~~~------~~-~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
+||+|+-.-.. | +.+++|-+.-|. .. ..++++ ..+.++..++.+..++ .-..||-|||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r---------~~~~LS~Ge~ 177 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR---------PFGSLSQGEQ 177 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC---------chhhcCHhHH
Confidence 99999865422 2 567888775432 22 233332 2233444444443222 1257999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
|||.|||||+.+|++|||||||+|||...++.+.+.|.++... ..+.++|+|||..+++.. .++++.+++|+++..|.
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999998653 346799999999999976 69999999999998773
No 336
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.3e-41 Score=355.35 Aligned_cols=203 Identities=28% Similarity=0.477 Sum_probs=169.5
Q ss_pred CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c
Q 017091 146 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q 221 (377)
Q Consensus 146 ~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 221 (377)
++++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+++.+|||+|++.++ .
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 357999999999999999999999999999999999999885 899999999875 345678899999999888 5
Q ss_pred ccHHHHHhcCCCC----CCCHHHHHHHHHHcCHHHHHHhCCC--CcccccCC----CCCChHHHHHHHHHHHHcCCCCEE
Q 017091 222 MDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPC--GYETLVDD----DLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 222 ~tv~eni~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~----~~LSgGq~QRv~iAral~~~p~il 291 (377)
+||+||+.|+... ....++ +...+++.++.++. ..++.++. ..|||||||||+|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 7999999875321 112221 12234455555443 34666663 369999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-hH-HhcCeEEEEeCCEEEEEcChHHHh
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
+|||||+|||+.+...+++.|+++.+ +|+|+|+++|+++ .+ ..+|++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQ---KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999999864 4899999999996 44 569999999999999999998874
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.9e-41 Score=346.52 Aligned_cols=202 Identities=22% Similarity=0.335 Sum_probs=163.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 324 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 324 VIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred EEEEEeEEEEECCe---eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 59999999999743 599999999999999999999999999999999999999999999954 2 159
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCC-CC--CHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEP-QLL-QMDIKSNIMYGCPK-DV--KNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~-~l~-~~tv~eni~~~~~~-~~--~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++ .++ ..|+.||+.++... .. ........++..++.. ..+ ....+||||||||++||||+
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQ---------KKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhc---------CchhhCCHHHHHHHHHHHHH
Confidence 9999997 555 57999999875321 11 1112222333333321 111 12367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC-CEEE-EEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~-G~i~-~~g~~~~l~~~ 361 (377)
+.+|++|||||||++||+.+...+.+.|.++ .+ |||+||||++.+.. ||+|++|++ |++. ..|+.++++++
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEF-----PG-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999886 24 89999999999875 999999996 7887 47888877654
No 338
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=299.78 Aligned_cols=219 Identities=26% Similarity=0.422 Sum_probs=179.8
Q ss_pred EEEEEEEEEcCCC--CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 132 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+++.|+.+.|... ..+++|+++|++|++|+++.|+|.||||||||++.|+|-++|++|+|.|||.+++.++.......
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 4566777766422 13579999999999999999999999999999999999999999999999999999998887788
Q ss_pred eEEEccCCc--Cc-cccHHHHHhcCCCC----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHH
Q 017091 210 IGFVGQEPQ--LL-QMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAI 280 (377)
Q Consensus 210 i~~v~Q~~~--l~-~~tv~eni~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~i 280 (377)
++-|||+|. .+ ++||.||+.++..+ ..+.. .....+....+.+..++.|+.-.+.. .-|||||||-+++
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 999999995 34 78999999874321 11111 11112223445567778887766653 4699999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcC
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~ 354 (377)
+.|.++.|+||+|||-|++|||.+.+.+++.=.++.++ .+.|.+||||+++.+- +.+|.++|++|+|+.+-+
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~--~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE--HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHh--cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999999999998887764 4789999999999874 589999999999997644
No 339
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=295.02 Aligned_cols=227 Identities=23% Similarity=0.428 Sum_probs=188.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC-EeCCCCCHHHH-hc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-FPLTDLDIRWL-RE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g-~~i~~~~~~~~-r~ 208 (377)
.++++||+++|++- .+|+++||++.+||.-+|+|||||||||++..|+|..+|++|+++++| .++..++...+ |.
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 58999999999863 699999999999999999999999999999999999999999999999 89998887654 56
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
.||--||.|..| +.||+||+.+....+.+-... ....++..+++.+.....+.........||.||||++.|++-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 799999999999 789999998754322211000 011222334444444433333333346799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
++++|++|+||||++|+-.....+.-++|+.++ .+++|++|.|||.+++. |++|-||+.|++...|+.+++-++.
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la----~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA----GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHh----cCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCc
Confidence 999999999999999999999999999999995 35799999999999986 9999999999999999999997765
Q ss_pred HH
Q 017091 363 RL 364 (377)
Q Consensus 363 ~~ 364 (377)
..
T Consensus 238 ~V 239 (249)
T COG4674 238 KV 239 (249)
T ss_pred ce
Confidence 43
No 340
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.8e-41 Score=289.24 Aligned_cols=232 Identities=28% Similarity=0.458 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCC------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
-++++|++++|..+ ....+++.|||++++|+.+||+|.||||||||.|+|+|..+|++|+|++||+++...+..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 47889999887532 124689999999999999999999999999999999999999999999999998766666
Q ss_pred HHhcceEEEccCCcC-cc--ccHHHHHhcCCC--CC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 205 WLREKIGFVGQEPQL-LQ--MDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l-~~--~tv~eni~~~~~--~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
.+.++|-++||||+- |+ ..|-.-+..+.. .+ ...+++.+.++.+|+ +|+ .+...++.||-|||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pd--han~~~~~la~~QK 155 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPD--HANYYPHMLAPGQK 155 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Ccc--ccccchhhcCchhH
Confidence 666789999999963 32 333333332211 11 123344445555544 332 23334467999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||||+||||+.+|+|+|.||+.++||...+.++.++..++.++ .|.+-|.|+.++..++. +|+|+||++|+++|.|+
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek--~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHH--hCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999999999999999764 69999999999999997 99999999999999999
Q ss_pred hHHHhhcC--HHHHHHHHHH
Q 017091 355 HAELLHKG--RLYAKLVKRQ 372 (377)
Q Consensus 355 ~~~l~~~~--~~~~~~~~~~ 372 (377)
+.+++... ..-++++.+.
T Consensus 234 t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 234 TADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhhcCCccHHHHHHHHHH
Confidence 99998763 3445555543
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.3e-41 Score=345.75 Aligned_cols=202 Identities=21% Similarity=0.313 Sum_probs=161.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 5999999999974 3699999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEccCCc-Cc-cccHHHHHhcCCCC-CCC--HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 211 GFVGQEPQ-LL-QMDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 211 ~~v~Q~~~-l~-~~tv~eni~~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
||+||++. ++ ..|+.||+.++... ... .......++..++.+. .......+|||||||||+|||||+
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS--------DQQKKVGQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh--------HhcCchhhCCHHHHHHHHHHHHHh
Confidence 99999973 55 57999999875321 111 1112223333332110 111123679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC-CEEE-EEcChHHHhh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLH 360 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~-G~i~-~~g~~~~l~~ 360 (377)
.+|++|||||||++||+.+.+.+.+.|.++ .+ |||+||||++.+.. ||+|++|++ |+++ ..|+.+++.+
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEF-----AG-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-----CC-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999987 23 89999999999876 999999996 5876 4577766544
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=347.08 Aligned_cols=199 Identities=21% Similarity=0.333 Sum_probs=162.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||++.|++ +++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999974 36999999999999999999999999999999999999999999999741 259
Q ss_pred EEEccCC--cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEP--QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~--~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
||++|++ .+. ..|+.+++... ........+...+..+++. +..++. ...|||||||||+|||+|+.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~---------~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTEE---------TRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcCc---------hhhCCHHHHHHHHHHHHHhc
Confidence 9999975 233 45788876421 1112233344444444442 122222 26799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHHh
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELL 359 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l~ 359 (377)
+|++|||||||++||+.+...+.+.|.++ .| |||+||||++++.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-----EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999886 24 99999999999975 9999999999997 778888764
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.9e-40 Score=345.59 Aligned_cols=200 Identities=22% Similarity=0.417 Sum_probs=160.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 5999999999974 36999999999999999999999999999999999999999999998 4322 59
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCCC-CC--HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEP-QLL-QMDIKSNIMYGCPKD-VK--NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~-~l~-~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||++|++ .++ ..||.||+.++.... .. ..++...+...++. +..++ ....|||||||||+|||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMT---------PVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhC---------hhhhCCHHHHHHHHHHHHH
Confidence 9999986 355 579999998753211 01 22223333333331 11121 2257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe-CCEEEE-EcChHHHh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-DGRIIE-VGNHAELL 359 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~-~G~i~~-~g~~~~l~ 359 (377)
+.+|++|||||||++||+.+...+.+.++++ +.|||+||||.+++.. ||++++|+ +|++.. .|+.++.+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999988876 3499999999999975 99999998 899976 46666653
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.9e-40 Score=293.70 Aligned_cols=156 Identities=29% Similarity=0.370 Sum_probs=136.4
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 214 (377)
.||+++|++. .++++ +|++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~~~---~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGVF---FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECCE---EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 5899999753 58888 49999999999999999999999999999999999999999853 78888
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 017091 215 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 215 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlD 294 (377)
|++. ||||||||++||||++.+|+++|||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8542 7999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE--cChHHHh
Q 017091 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV--GNHAELL 359 (377)
Q Consensus 295 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~--g~~~~l~ 359 (377)
|||++||+.+++.+.+.+.+++++ .+.|+|++||+++.+.. ||++++|+++-.+.. |.|....
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999999988642 24899999999999975 999999998765533 5554333
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.9e-40 Score=371.47 Aligned_cols=212 Identities=24% Similarity=0.445 Sum_probs=172.3
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC---CCCCeEEECCEeCCCCCHHHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 206 (377)
.++++||+++|+.+ ..+++|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999622 13579999999999999999999999999999999999997 78999999999874 246
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCC----CCCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHH
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQK 275 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~----~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~ 275 (377)
|+.+|||+|++.++ ..||+||+.++. +...+++ .+.++++..++.+. .++.++ +..||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHh
Confidence 78899999987655 789999998742 1112222 22333444443332 233333 236999999
Q ss_pred HHHHHHHHHcCCCC-EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH--HhcCeEEEEeCC-EEEE
Q 017091 276 QRIAIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG-RIIE 351 (377)
Q Consensus 276 QRv~iAral~~~p~-illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~--~~~d~v~~l~~G-~i~~ 351 (377)
||++|||||+.+|+ ||+|||||||||+.++..+++.|+++++ +|+|||+++|+++.. ..+|++++|++| ++++
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~---~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD---HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 99999999999997 9999999999999999999999999864 489999999999963 469999999997 9999
Q ss_pred EcChH
Q 017091 352 VGNHA 356 (377)
Q Consensus 352 ~g~~~ 356 (377)
.|++.
T Consensus 985 ~G~~~ 989 (1394)
T TIGR00956 985 FGDLG 989 (1394)
T ss_pred ECCcc
Confidence 99874
No 346
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=319.55 Aligned_cols=323 Identities=21% Similarity=0.252 Sum_probs=252.5
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL 82 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~ 82 (377)
+.|..|+.|+.+.++.+...........+...+...+..+......++.++-+.+++.....|.++.|.++.....++.+
T Consensus 256 E~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v 335 (604)
T COG4178 256 EAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQV 335 (604)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHH
Confidence 57889999999988888777766554433333333333333333333445556677777889999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcccccc-ccc-ccccccEEEEEEEEEcCCCCCCCceeeee
Q 017091 83 IYATWRMVDNLSSLLQSIGATEKVFQLIDL------LPSNQFLSEG-VKL-QRLMGHVQFVNISFHYPSRPTVPILNHVC 154 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~------~~~~~~~~~~-~~~-~~~~~~i~~~~v~~~y~~~~~~~vL~~is 154 (377)
...+..+...+..+..-.+.+.|+.++... +++....... ... ......|+++|++..-|++ ...|++.|
T Consensus 336 ~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~ 413 (604)
T COG4178 336 HSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELN 413 (604)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--Ceeeccce
Confidence 999999999999999999999999887632 2111111000 000 1013469999999998865 37999999
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 234 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~ 234 (377)
|+|++||.+-|.||||||||||+|+|+|+.|--+|+|.+-. -..+-|+||.|++..+|.+|-|+|+...
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~ 482 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAA 482 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCC
Confidence 99999999999999999999999999999999999886531 1358999999999999999999998654
Q ss_pred -CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 017091 235 -DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313 (377)
Q Consensus 235 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~ 313 (377)
+.+++++.+++.++++.++.+++... +.+ ...||+|||||+++||.++++|++++|||.||+||+.++..+.++++
T Consensus 483 ~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~W--~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~ 559 (604)
T COG4178 483 PDFSDAELVAVLHKVGLGDLAERLDEE-DRW--DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK 559 (604)
T ss_pred CCCChHHHHHHHHHcCcHHHHHHHhcc-CcH--hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHH
Confidence 37789999999999999999886522 111 24699999999999999999999999999999999999999999998
Q ss_pred HhhccCCCCeEEEEEecCchhHHhcCeEEEEe
Q 017091 314 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 345 (377)
Q Consensus 314 ~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~ 345 (377)
+- -.+.|||.|+|+.......++.+-+.
T Consensus 560 ~~----lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 560 EE----LPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hh----CCCCEEEEeccchhhHHHHhhheeec
Confidence 64 25889999999988877766655553
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-39 Score=284.09 Aligned_cols=155 Identities=45% Similarity=0.749 Sum_probs=143.4
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
++|++|.|++. ++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.......+++.++|+
T Consensus 2 ~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 68999999753 599999999999999999999999999999999999999999999999988766566677889999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 017091 214 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 293 (377)
Q Consensus 214 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illl 293 (377)
|| |||||+||++||||++.+|+++||
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 899999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 294 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
||||++||+.++..+.+.+.++.+ .++|+|++||+++.+.. ||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAE---EGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999998864 26899999999999987 79999999874
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.7e-40 Score=345.44 Aligned_cols=200 Identities=27% Similarity=0.425 Sum_probs=159.2
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||++.|+++ .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 369999999999643 3599999999999999999999999999999999999999999999865 236
Q ss_pred eEEEccCCcCccccHHHHHh--cC-CCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 210 IGFVGQEPQLLQMDIKSNIM--YG-CPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~--~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|||++|++. ...++.+|.. +. .......+++...++.+++.. ..... ...|||||||||+||||++
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~---------~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCC---------ccccCHHHHHHHHHHHHHh
Confidence 999999863 2334444432 11 011223445555666665542 22222 2679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAEL 358 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l 358 (377)
.+|++|||||||++||+.+...+.+.+.++ .+ |||+||||++.+.. ||++++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-----QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999988887764 24 99999999999976 9999999999998 56776653
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=341.98 Aligned_cols=209 Identities=24% Similarity=0.352 Sum_probs=155.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+++|++. ++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~~---~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGVR---VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 7899999999753 69999999999999999999999999999999999999999999998842 378
Q ss_pred EEccCCcCccccHHHHHhcCCCC--C-----------CCHHHH---HHHH-------HHcCHHHHHHhCCCC-cccccCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPK--D-----------VKNEDI---EWAA-------KQAYVHEFILSLPCG-YETLVDD 267 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~--~-----------~~~~~~---~~~~-------~~~~l~~~~~~~~~~-~~~~~~~ 267 (377)
|++|++..+..++.+++.-.... . ...... .... ....+.+++..+... .......
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 147 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV 147 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence 88876533334444443211000 0 000000 0000 011233445554332 1112223
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||.+++.. ||+|++|++
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 679999999999999999999999999999999999999999888765 4599999999999976 999999999
Q ss_pred CEEEE-EcChHHHhh
Q 017091 347 GRIIE-VGNHAELLH 360 (377)
Q Consensus 347 G~i~~-~g~~~~l~~ 360 (377)
|++.. .|+.+....
T Consensus 222 G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 222 QSLFEYTGNYSSFEV 236 (638)
T ss_pred CEEEEecCCHHHHHH
Confidence 99974 677766553
No 350
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-39 Score=286.23 Aligned_cols=217 Identities=29% Similarity=0.399 Sum_probs=179.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHH-
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL- 206 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~- 206 (377)
..++++|++.+-.++ +.+|++|||+|++||+.+|.||||||||||.++|+|. |++++|+|.++|+|+..+++.++
T Consensus 2 ~~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERA 79 (251)
T COG0396 2 MMLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERA 79 (251)
T ss_pred ceeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHH
Confidence 468999999998653 3699999999999999999999999999999999998 58899999999999999988754
Q ss_pred hcceEEEccCCcCcc-ccHHHHHhcCCCC--C------CCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHH
Q 017091 207 REKIGFVGQEPQLLQ-MDIKSNIMYGCPK--D------VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~------~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
|..|.+-+|.|.=++ .++.+.+..+... . ...+++.+.++..++++ ++++. ++ ..+|||||+
T Consensus 80 r~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~-------vN-~GFSGGEkK 151 (251)
T COG0396 80 RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERY-------VN-EGFSGGEKK 151 (251)
T ss_pred hcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcc-------cC-CCcCcchHH
Confidence 567999999998775 4888887643211 0 11233444555555544 22221 11 359999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEcC
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g~ 354 (377)
|..|+.+++.+|++.|||||-||||..+-+.+.+.+..++. .|.++++|||.-..+.+ .|+|.+|-+|+|+..|.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~---~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE---EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999975 48999999999999886 49999999999999999
Q ss_pred hHHHhh
Q 017091 355 HAELLH 360 (377)
Q Consensus 355 ~~~l~~ 360 (377)
+ ++..
T Consensus 229 ~-el~~ 233 (251)
T COG0396 229 P-ELAE 233 (251)
T ss_pred H-HHHH
Confidence 9 6654
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.3e-39 Score=337.71 Aligned_cols=209 Identities=27% Similarity=0.418 Sum_probs=156.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
.+|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .
T Consensus 2 ~~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~ 67 (635)
T PRK11147 2 SLISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------I 67 (635)
T ss_pred cEEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------E
Confidence 35899999999975 369999999999999999999999999999999999999999999998731 2
Q ss_pred eEEEccCCcCc-cccHHHHHhcCC-----------------CCCCCHHHHHHH------H-------HHcCHHHHHHhCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGC-----------------PKDVKNEDIEWA------A-------KQAYVHEFILSLP 258 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~-----------------~~~~~~~~~~~~------~-------~~~~l~~~~~~~~ 258 (377)
+++++|.+... ..++.+++..+. ......+.+... . ....+.++++.+.
T Consensus 68 ~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred EEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 56677654321 244554432110 000000000000 0 0112344455543
Q ss_pred CCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-
Q 017091 259 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA- 337 (377)
Q Consensus 259 ~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~- 337 (377)
.. .......|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||..++..
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~------~~tvlivsHd~~~l~~~ 219 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF------QGSIIFISHDRSFIRNM 219 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC------CCEEEEEeCCHHHHHHh
Confidence 32 12223679999999999999999999999999999999999999999999876 2499999999999976
Q ss_pred cCeEEEEeCCEEEE-EcChHHHhh
Q 017091 338 VDRIVVIDDGRIIE-VGNHAELLH 360 (377)
Q Consensus 338 ~d~v~~l~~G~i~~-~g~~~~l~~ 360 (377)
||+|++|++|+++. .|++.+.+.
T Consensus 220 ~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 220 ATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred cCeEEEEECCEEEEecCCHHHHHH
Confidence 99999999999985 588776654
No 352
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=271.49 Aligned_cols=198 Identities=25% Similarity=0.434 Sum_probs=169.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r 207 (377)
++.++||+...+++ -.|.++||+|.+||++.|.||||||||||+.-+.|.+.++ +|++.+|+++++..+.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 47899999888754 5899999999999999999999999999999999999885 89999999999877654 5
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+++|++|||+.+| ..+|.+|+.|..+... .+.....++++.++.++..+.| .+||||||-||++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP---------~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP---------ATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh---------hhcCcchHHHHHHHH
Confidence 7899999999999 6899999999765433 2333456788888888888777 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
+|+.+|+.++||||+|.||..-+.++.+....-.+ ..|..+|+||||...+....||+-|
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r--~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR--AAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH--hcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999999999887654322 3588999999999988855666655
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.2e-38 Score=351.98 Aligned_cols=213 Identities=25% Similarity=0.436 Sum_probs=171.8
Q ss_pred cEEEEEEEEEcCCC----------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeC
Q 017091 131 HVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPL 198 (377)
Q Consensus 131 ~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i 198 (377)
.+.++||++..+.. ..+.+|+|||+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58999999987421 123699999999999999999999999999999999999763 789999999876
Q ss_pred CCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCC----CCCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccC---
Q 017091 199 TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVD--- 266 (377)
Q Consensus 199 ~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~----~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~--- 266 (377)
. ....++.+|||+|++.++ ..||+||+.+.. +...+.+ .+.+.++..++.+.. ++.++
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCC
Confidence 4 234567799999998776 689999998742 1122222 233444555544433 23332
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-H-HhcCeEEEE
Q 017091 267 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVI 344 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~-~~~d~v~~l 344 (377)
...|||||||||+|||+|+.+|++|+|||||||||+.++..+++.|+++.+ .|+|||+++|+++. + ..||++++|
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~---~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 247999999999999999999999999999999999999999999999864 48899999999984 4 559999999
Q ss_pred eC-CEEEEEcChH
Q 017091 345 DD-GRIIEVGNHA 356 (377)
Q Consensus 345 ~~-G~i~~~g~~~ 356 (377)
++ |+++..|++.
T Consensus 1094 ~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1094 KRGGQVIYSGPLG 1106 (1470)
T ss_pred cCCCEEEEECCcc
Confidence 96 8999999864
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.6e-38 Score=278.85 Aligned_cols=156 Identities=29% Similarity=0.431 Sum_probs=126.3
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
.++|+|+||++++|++++|+||||||||||+|++. +++|++.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 47999999999999999999999999999999985 379999998762 111 2345888877
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCcCCCCCHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSE 303 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~--p~illlDEPts~LD~~ 303 (377)
.+. ++.++.+.. ......+||||||||++||||++.+ |+++||||||++||+.
T Consensus 68 ---------------~~~---------l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 68 ---------------LQF---------LIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred ---------------HHH---------HHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 012 222222211 1112367999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 304 ~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
+.+.+.+.++++++ .|+|||++||+++.+..||++++|++|+.
T Consensus 124 ~~~~l~~~l~~~~~---~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 124 DINQLLEVIKGLID---LGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 99999999998853 48899999999999877999999976543
No 355
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-39 Score=292.80 Aligned_cols=203 Identities=25% Similarity=0.413 Sum_probs=156.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCcCc-cccH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI 224 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv 224 (377)
.++++||||+|++|++++++|||||||||++|+|.|++.|++|.|.++|.+...- .++.-+++++|+ |...+. ..-+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~-~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR-REEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh-HHHHHHHHHHHhhhhheeeeechh
Confidence 3589999999999999999999999999999999999999999999999876542 334445687776 444443 3223
Q ss_pred HHHHhcC-CCCCCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC
Q 017091 225 KSNIMYG-CPKDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299 (377)
Q Consensus 225 ~eni~~~-~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~ 299 (377)
.|-+..- .-.+..+.+. ....+..+++.++.. ..+.||-|||.|+.||.||+++|+||+|||||=|
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~---------~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW---------PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhh---------hhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 3322110 0012222222 222222223322221 1257999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 300 LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||..++..+.+.+++..++ .+.||++.||+++.+.. ||||++|+.|+++.+|+.+++...
T Consensus 187 LDV~aq~~ir~Flke~n~~--~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 187 LDVNAQANIREFLKEYNEE--RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred cchhHHHHHHHHHHHHHHh--hCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999999999999999764 68999999999999865 999999999999999999988654
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=7.5e-38 Score=317.47 Aligned_cols=211 Identities=32% Similarity=0.485 Sum_probs=164.3
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
|..|+++|++++|++ +++++|+||++.+|+++||||+||||||||||+|+|...|++|+|...+. .
T Consensus 1 m~~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~ 66 (530)
T COG0488 1 MSMITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------L 66 (530)
T ss_pred CceEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------c
Confidence 346999999999965 36999999999999999999999999999999999999999999987552 2
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCC-CHHHHHHHH------------------H-------HcCHHHHHHhCCCCc
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDV-KNEDIEWAA------------------K-------QAYVHEFILSLPCGY 261 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~-~~~~~~~~~------------------~-------~~~l~~~~~~~~~~~ 261 (377)
+|+|++|++.+. ..||.+.+..+...-. ...+...+. + ...+...+..++...
T Consensus 67 ~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~ 146 (530)
T COG0488 67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD 146 (530)
T ss_pred eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc
Confidence 599999999988 4699999876532100 000001100 0 022233344433222
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCe
Q 017091 262 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 340 (377)
Q Consensus 262 ~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~ 340 (377)
. .....+||||||.||+|||||+.+|++|||||||++||..+..-+.+.|.++ +| |+|+||||-+++.. |++
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-----~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-----PG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-----CC-cEEEEeCCHHHHHHHhhh
Confidence 1 1223679999999999999999999999999999999999999888888866 46 99999999999987 999
Q ss_pred EEEEeCCEEEEE-cChHHHhh
Q 017091 341 IVVIDDGRIIEV-GNHAELLH 360 (377)
Q Consensus 341 v~~l~~G~i~~~-g~~~~l~~ 360 (377)
|+.++.|++... |..+..++
T Consensus 220 I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 220 ILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred eEEecCCceeEecCCHHHHHH
Confidence 999999988654 66665544
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.9e-39 Score=331.13 Aligned_cols=192 Identities=23% Similarity=0.278 Sum_probs=153.4
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-----------ECCEeCCCCCHH
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR 204 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~ 204 (377)
+++++|+.+ ..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|.++..+...
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 388999753 35999999 8999999999999999999999999999999999997 899887543211
Q ss_pred --HHhcceEEEcc----CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 205 --WLREKIGFVGQ----EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 --~~r~~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
..+.++++.+| .|.+|.+|+.||+... + ..+.+.++++..++....++.+ .+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENILDRDI---------SELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHH
Confidence 11223455554 5556667999998742 1 1234445555555544333322 57999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||+++|++|||||||++||+.++..+.+.|+++. + |+|||+||||++.+.. ||+|++|+++
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~---~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA---E-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999985 3 7899999999999976 9999999873
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=270.66 Aligned_cols=228 Identities=25% Similarity=0.415 Sum_probs=174.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE-----eCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF-----PLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~-----~i~~~~~~~ 205 (377)
-+++.++++.|+.. ...+||||++.|||..+|||+||||||||+++|++-+.|++|+|.+.-. ++-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 48999999999864 4789999999999999999999999999999999999999999998652 232333333
Q ss_pred ----HhcceEEEccCCc--Cc-c----ccHHHHHh-cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc-CCCCCCh
Q 017091 206 ----LREKIGFVGQEPQ--LL-Q----MDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DDDLLSG 272 (377)
Q Consensus 206 ----~r~~i~~v~Q~~~--l~-~----~tv~eni~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~LSg 272 (377)
+|..-|||.|+|. |- . +.|-|-+. .|.. + ...+.. ...+|+++.....+..- -+..+||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-H--YG~iR~-----~a~~WL~~VEI~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-H--YGNIRA-----EAQDWLEEVEIDLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-h--hhhHHH-----HHHHHHHhcccCcccccCcccccch
Confidence 3456899999994 21 2 23333322 2211 1 111111 12344444332222111 1367999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
|++||+.|||-|+..|+++++||||.|||..-+.+++++++.+..+ -+.++++||||+..++. +||.++|++|++++
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~--l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHh--cCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9999999999999999999999999999999999999999998764 48899999999999986 99999999999999
Q ss_pred EcChHHHhhc-CHHHHHHHHH
Q 017091 352 VGNHAELLHK-GRLYAKLVKR 371 (377)
Q Consensus 352 ~g~~~~l~~~-~~~~~~~~~~ 371 (377)
.|-.+.++.+ ...|.+++-+
T Consensus 233 ~GLTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 233 SGLTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred cccccccccCCCCchHHHHHH
Confidence 9999988876 4558776643
No 359
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-37 Score=289.15 Aligned_cols=273 Identities=26% Similarity=0.301 Sum_probs=212.6
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCC
Q 017091 65 GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSR 144 (377)
Q Consensus 65 g~lt~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~ 144 (377)
+.-+......+.+....+-.|+.++...+..+..+.+|..++.++-..|+....+... ..| .-..|+++||.|.|...
T Consensus 258 ~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q-~~p-~~~~lelrnvrfay~~~ 335 (546)
T COG4615 258 GWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQ-AFP-DWKTLELRNVRFAYQDN 335 (546)
T ss_pred ccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCC-cCC-cccceeeeeeeeccCcc
Confidence 3334444444555566677899999999999999999999998876544332222111 111 13369999999999864
Q ss_pred CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 017091 145 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 224 (377)
Q Consensus 145 ~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 224 (377)
. --+..||++|++||++.|+|.|||||||++++|.|+++|++|+|++||.+++.-+++++|+-++-||-|.++|+.++
T Consensus 336 ~--FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll 413 (546)
T COG4615 336 A--FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL 413 (546)
T ss_pred c--ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh
Confidence 2 46899999999999999999999999999999999999999999999999999899999999999999999996543
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
+.....+.+.+...+++..+.....- .++ ......||.|||+|+++--|++-+.||+++||=.+.-||.-
T Consensus 414 ------~~e~~as~q~i~~~LqrLel~~ktsl-~d~---~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaF 483 (546)
T COG4615 414 ------GPEGKASPQLIEKWLQRLELAHKTSL-NDG---RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAF 483 (546)
T ss_pred ------CCccCCChHHHHHHHHHHHHhhhhcc-cCC---cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHH
Confidence 21222445556666655444332211 111 11113599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 305 ~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
++.+.+.+.-+.++ .|+||+.||||-.....|||++.|++|++++..
T Consensus 484 RR~FY~~lLp~LK~--qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 484 RREFYQVLLPLLKE--QGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHhHHHHH--hCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99998876554443 699999999999999999999999999999864
No 360
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-37 Score=280.82 Aligned_cols=191 Identities=27% Similarity=0.441 Sum_probs=158.7
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
.++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+--.-+. -..||-| +.|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~-----lg~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIE-----LGAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhh-----cccCCCc------ccchHH
Confidence 57999999999999999999999999999999999999999999999996321111 1233322 479999
Q ss_pred HHhc-----CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCC
Q 017091 227 NIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301 (377)
Q Consensus 227 ni~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD 301 (377)
||.+ |......++...+..+-+.+.+|++. |. .++|.||+-|+++|-|...+|+|||+||..+.-|
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-Pv--------ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD 179 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-PV--------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD 179 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-ch--------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCC
Confidence 9864 33222334445556666777777764 32 5689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+.-+++-.+.+.++.+ +++|+|+||||++.++. |||+++|++|+++..|+++++.+
T Consensus 180 ~~F~~K~~~rl~e~~~---~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 180 AAFQEKCLERLNELVE---KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999999988854 46899999999999976 99999999999999999999975
No 361
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.5e-38 Score=350.12 Aligned_cols=205 Identities=21% Similarity=0.278 Sum_probs=163.1
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC----CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q 221 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 221 (377)
+++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.+||+++.+.. ...|+.++|++|++.++ .
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 579999999999875432 33566799999998777 5
Q ss_pred ccHHHHHhcCCC----C----CCCHHHHHHHHHHcCHHHHHHhCCC--CcccccC---CCCCChHHHHHHHHHHHHcCCC
Q 017091 222 MDIKSNIMYGCP----K----DVKNEDIEWAAKQAYVHEFILSLPC--GYETLVD---DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 222 ~tv~eni~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~---~~~LSgGq~QRv~iAral~~~p 288 (377)
.||+||+.++.. . ....++..+. ..++.++.+.. -.++.++ ...|||||||||+|||||+.+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKH----IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----HHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 899999987421 0 1122211110 01122333222 2344443 2579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc-hhHH-hcCeEEEEeCCEEEEEcChHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIK-AVDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l-~~~~-~~d~v~~l~~G~i~~~g~~~~l 358 (377)
++++|||||+|||+.++..+.+.|+++.++ .|+|+|+++|++ +.+. .+|+|++|++|+++..|+++++
T Consensus 229 ~vlllDEPTsgLD~~~~~~i~~~L~~la~~--~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 229 KIQCWDNATRGLDSATALEFIRALKTSANI--LDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 999999999999999999999999998653 488999999997 4554 4999999999999999999877
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-37 Score=326.80 Aligned_cols=221 Identities=23% Similarity=0.306 Sum_probs=159.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC---CCCCCeEEECCEeCCCC--CH-
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYIDGFPLTDL--DI- 203 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I~i~g~~i~~~--~~- 203 (377)
..|+++|++|+|++. ++|+|+||+|++|+++|||||||||||||+|+|+|.. .|++|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~~~---~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGGR---DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCCC---EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 369999999999753 5999999999999999999999999999999999864 58999998766543211 11
Q ss_pred -----------HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCH----HHHHHHHHHc----------CHHHHHHhCC
Q 017091 204 -----------RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN----EDIEWAAKQA----------YVHEFILSLP 258 (377)
Q Consensus 204 -----------~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~----~~~~~~~~~~----------~l~~~~~~~~ 258 (377)
..++..+++++|++.+...+..+|........... +++.++.+.. .+...+..+.
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 11244588999987654333333332211101111 1222222222 1223333333
Q ss_pred CCcc-cccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 259 CGYE-TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 259 ~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
.... ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+||||++.+..
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~~l~~ 406 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHAREFLNT 406 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHH
Confidence 2100 11123679999999999999999999999999999999999999999999876 5699999999999976
Q ss_pred -cCeEEEEeCCEEE-EEcChHHHh
Q 017091 338 -VDRIVVIDDGRII-EVGNHAELL 359 (377)
Q Consensus 338 -~d~v~~l~~G~i~-~~g~~~~l~ 359 (377)
||+|++|++|++. ..|+.++..
T Consensus 407 ~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 407 VVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999996 567766554
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.2e-37 Score=343.97 Aligned_cols=208 Identities=23% Similarity=0.392 Sum_probs=165.6
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 222 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 222 (377)
+++|+|+|+.|+|||+++|+||||||||||||+|+|.++|+ +|+|.+||.++.+.. .++.++||+|++.++ .+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 46999999999999999999999999999999999999998 999999999886543 256799999998777 68
Q ss_pred cHHHHHhcCCC-C----------CCCHHH----------HHHHHHH---------cCHHHHHHhCCCC--cccccCC---
Q 017091 223 DIKSNIMYGCP-K----------DVKNED----------IEWAAKQ---------AYVHEFILSLPCG--YETLVDD--- 267 (377)
Q Consensus 223 tv~eni~~~~~-~----------~~~~~~----------~~~~~~~---------~~l~~~~~~~~~~--~~~~~~~--- 267 (377)
||+||+.|+.. . ....++ +....+. ...+..++.+... .+|.++.
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987421 0 000110 0000000 0123455554432 3455542
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-hH-HhcCeEEEEe
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVID 345 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~-~~-~~~d~v~~l~ 345 (377)
..|||||||||+||++|+.+|+++++||||+|||+.+..++.+.|+++.+. .|+|+|+++|++. .+ ..+|+|++|+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~--~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL--TEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHHhheEEEee
Confidence 579999999999999999999999999999999999999999999998643 4789999999974 55 4599999999
Q ss_pred CCEEEEEcChHHHh
Q 017091 346 DGRIIEVGNHAELL 359 (377)
Q Consensus 346 ~G~i~~~g~~~~l~ 359 (377)
+|+++..|+++++.
T Consensus 413 ~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 413 EGQIVYQGPRDHIL 426 (1470)
T ss_pred CceEEEeCCHHHHH
Confidence 99999999988875
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-36 Score=315.71 Aligned_cols=218 Identities=35% Similarity=0.559 Sum_probs=178.8
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC---CCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p---~~G~I~i~g~~i~~~~~~~ 205 (377)
.+.++|++..-++.. .+++|+|||.+++|||+.||.||||||||||+++|+|..++ .+|+|++||++. +.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhh
Confidence 488999998886542 46899999999999999999999999999999999999974 799999999654 3466
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCC--cccccCC---CCCChHHH
Q 017091 206 LREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVDD---DLLSGGQK 275 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~---~~LSgGq~ 275 (377)
+++.+|||.|+..++ ..||+|++.|.. +...+.++ +...+++.+..++.. -++.++. ..+|||||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~-----k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE-----KRERVEEVISELGLEKCADTLIGNPGIRGLSGGER 176 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCChhhccceecCCCCCccccchh
Confidence 788899999999988 689999997642 22112222 122334445554433 3444442 46999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-H-HhcCeEEEEeCCEEEEEc
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~-~~~d~v~~l~~G~i~~~g 353 (377)
+||+||.-|+.||+||+|||||||||..+..++.+.|+++.+ .|+|||++-|.++. + ...|++++|.+|+++..|
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~---~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR---SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHh---CCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 999999999999999999999999999999999999999975 49999999999974 3 569999999999999999
Q ss_pred ChHHHh
Q 017091 354 NHAELL 359 (377)
Q Consensus 354 ~~~~l~ 359 (377)
+++++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 998764
No 365
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=263.64 Aligned_cols=189 Identities=24% Similarity=0.404 Sum_probs=159.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++.+|++..-++ ..++.++||++.+||.+-|.||||||||||||+|+|+.+|++|+|.|+|.++.... +..++.+-
T Consensus 3 L~a~~L~~~R~e---~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERGE---RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccCc---ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 677888876654 47999999999999999999999999999999999999999999999999887653 33567789
Q ss_pred EEccCCcCc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
|+...+-+= .+|++||+.|... .....+.+++++..+++..+. ++|. .+||-|||+||+|||-++..+
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp~--------~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLPV--------GQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccch--------hhcchhHHHHHHHHHHHcCCC
Confidence 999888775 7899999987422 113467788899998887643 3454 569999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
+++||||||++||+.....+...+..... +|-.||.+||..-.+.
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~---~GGiVllttHq~l~~~ 194 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHAA---QGGIVLLTTHQPLPIA 194 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHhc---CCCEEEEecCCccCCC
Confidence 99999999999999999999988887653 4678999999876553
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=6.2e-34 Score=288.93 Aligned_cols=202 Identities=28% Similarity=0.431 Sum_probs=165.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..++++|++++|++. +.+++++||.|.+|+.+||+||||+|||||+|+|+|...|.+|+|.+.-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 359999999999753 47999999999999999999999999999999999999999999987431 25
Q ss_pred eEEEccCC-cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+||.+|+. .++ ..|+.|++.-..+ ...+..+...+..+++..--...| ...||||||-|+.+|+.++.+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~~~~~--------v~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGEDQEKP--------VGVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHHHhCc--------hhhcCHhHHHHHHHHHHhccC
Confidence 99999988 344 4689999976532 222455666666655533222222 256999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE-cChHHHhh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV-GNHAELLH 360 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~-g~~~~l~~ 360 (377)
|.+|||||||+.||..+...+.+.|.++ .| |||+||||-.++.. |++++.+++ ++... |+.++..+
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f-----~G-tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF-----EG-TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC-----CC-eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 9999999999999999999999999987 24 99999999999987 999999998 66655 66665543
No 367
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=316.79 Aligned_cols=217 Identities=21% Similarity=0.403 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~ 209 (377)
.+.++|+++.|+... .+++++||.|++||+.|+.|+|||||||++|+|.|..+|++|++.++|.++.... ..+.++.
T Consensus 564 ~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred eEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 588999999998652 2999999999999999999999999999999999999999999999999987533 3347889
Q ss_pred eEEEccCCcCc-cccHHHHHhcCC-CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGC-PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+||+||+..++ .+|.+|.+.+-. -..... +.+.+.++..++.+..+. ....+|||+|+|+++|-|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~---------~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK---------QVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc---------chhhCCCcchhhHHHHHH
Confidence 99999999888 689999996521 111122 223444444444443332 236799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
++.+|++++|||||+|+||.+++.+++++.++++ .|+.+|++||.+++.+. |||+.+|.+|++...|+++++-++
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k---~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK---NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 9999999999999999999999999999999975 35699999999999987 999999999999999999998643
No 368
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=8.6e-33 Score=273.15 Aligned_cols=328 Identities=21% Similarity=0.266 Sum_probs=235.2
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcCHHHHHHHH--
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI----GQVSPEQLTKYV-- 76 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~----g~lt~g~l~~~~-- 76 (377)
+.|..|++++.+..+..+..+++.......-.+..++..+.+++-.+..++..++.+..+.. +.+++..+...+
T Consensus 276 E~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~ 355 (659)
T KOG0060|consen 276 EEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISN 355 (659)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhh
Confidence 57788999988888777777665554332222211222222332223333322222222222 456777765443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------------ccc-------ccc-cccccccccEE
Q 017091 77 --LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN-------------QFL-------SEG-VKLQRLMGHVQ 133 (377)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~-------------~~~-------~~~-~~~~~~~~~i~ 133 (377)
.++..++..+..+......+....+-..|+.++.+.-.+. ..+ ..+ ....+....|+
T Consensus 356 na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~ 435 (659)
T KOG0060|consen 356 NAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIE 435 (659)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEE
Confidence 2334455666666666666666677778887776432110 000 000 00111123699
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
+++|+++-|.+ +..+++|+||+|+.|+.+.|.||||||||+|+|.+.|+.+..+|.+.--...- -+.+-|+
T Consensus 436 ~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~~lffl 506 (659)
T KOG0060|consen 436 FEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PKDLFFL 506 (659)
T ss_pred eeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CCceEEe
Confidence 99999998874 34688999999999999999999999999999999999999999997533211 1459999
Q ss_pred ccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC---CCCCChHHHHHHHHHHHH
Q 017091 214 GQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD---DDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 214 ~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~LSgGq~QRv~iAral 284 (377)
||.|++-.+|.||.+.|+.. ...+++++.+.++.+++...+++.. |+++.+. ...||+||+||++.||-+
T Consensus 507 PQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~g-gld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 507 PQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREG-GLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred cCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhC-CCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 99999888999999998632 2356788999999999998888765 7875554 257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+++|++-+|||.||++|.+.+..+.+.+++. |.|.|-|+|+.+..+.-|.++-|+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999999999999999999888865 8999999999999998999999975
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=250.99 Aligned_cols=205 Identities=29% Similarity=0.440 Sum_probs=154.5
Q ss_pred cEEEEEEEEEcC----CCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE----eCCCCC
Q 017091 131 HVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLD 202 (377)
Q Consensus 131 ~i~~~~v~~~y~----~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~----~i~~~~ 202 (377)
.+.++||+|+|. ++-.-++++|+||+++.||++++-||||||||||+|+|.|-|.|++|+|++.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 378999999883 111247999999999999999999999999999999999999999999998543 232333
Q ss_pred HH---H-HhcceEEEccCCcCc-cccHHHHHh-----cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 017091 203 IR---W-LREKIGFVGQEPQLL-QMDIKSNIM-----YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 272 (377)
Q Consensus 203 ~~---~-~r~~i~~v~Q~~~l~-~~tv~eni~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg 272 (377)
+. + .|+.||||+|.-... ..+..|.++ .|.+.+....+....+.+.++.+-+..++ +.++||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La--------PaTFSG 155 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA--------PATFSG 155 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC--------CcccCC
Confidence 32 2 355699999965433 334344332 33322211222333344444444444443 367999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
||||||.|||.++.+-+||||||||++||..+++-+.++|.+.+. +|..+|=|-||-+.-+. |||++-|..
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka---~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA---RGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh---cCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999998764 58999999999777665 999988753
No 370
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.9e-34 Score=265.79 Aligned_cols=192 Identities=26% Similarity=0.341 Sum_probs=125.8
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHhhCCCCCCCeEEECC-------EeCC---CCCHHHHh-cceEEEc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDG-------FPLT---DLDIRWLR-EKIGFVG 214 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl-~~l~gl~~p~~G~I~i~g-------~~i~---~~~~~~~r-~~i~~v~ 214 (377)
.++|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+.. ..+. .......+ ...++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4699999999999999999999999999996 4442 234432210 0000 00001111 1244445
Q ss_pred cCCcC-c--cccHH---HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCC
Q 017091 215 QEPQL-L--QMDIK---SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 215 Q~~~l-~--~~tv~---eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
|++.. . ..++. +...+.... ...+... +. .+.++.+..... ......+||||||||++|||||+.+
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~---~~---~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLL-FARVGIR---ER---LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHH-hhhhhHH---HH---HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhC
Confidence 54421 1 12322 221110000 0000000 00 123444333221 1223468999999999999999999
Q ss_pred C--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEc
Q 017091 288 P--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 353 (377)
Q Consensus 288 p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g 353 (377)
| ++|||||||++||+.+...+.+.|+++++ .|.|+|+||||++.+..||++++| ++|+|+++|
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~---~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD---LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 8 59999999999999999999999998853 478999999999988779999999 999999876
No 371
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.2e-34 Score=245.98 Aligned_cols=134 Identities=44% Similarity=0.719 Sum_probs=113.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHH
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI 228 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni 228 (377)
|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.++ ..|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999998877778889999999998888 4679999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATS 298 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts 298 (377)
..++++.+.++..++.++.+ ..++ ...||||||||++|||||+++|+++||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~~~~-------~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLEDLLD-------RKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGGGTG-------SBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------cccccccccccccccccccc-------cccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 12344556666665544222 2221 25799999999999999999999999999997
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=1.2e-33 Score=255.02 Aligned_cols=164 Identities=24% Similarity=0.328 Sum_probs=128.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC---------CeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---------GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 221 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---------G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 221 (377)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.++|++.... ..+++|+|+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999987653 4677788765431 2356799999999776
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcC
Q 017091 222 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEAT 297 (377)
Q Consensus 222 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~illlDEPt 297 (377)
++.. ..+++.++++. + ++ .......||||||||++|||+++ .+|+++||||||
T Consensus 89 --------~~~~---~~~~~~~~l~~----------~-~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSII---SQGDVSEIIEA----------P-GK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeEE---ehhhHHHHHhC----------C-Cc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 2211 12233333332 1 11 11123579999999999999996 567999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 298 s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
++||+.+...+.+.|+++. ++.|||+|||+++.+..||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~----~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFS----KETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999884 35799999999998878999999864
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.3e-33 Score=261.42 Aligned_cols=195 Identities=27% Similarity=0.401 Sum_probs=138.5
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-----h-CC----CCCCC-----------eEEECCEeCCCCC---H
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----R-LY----EPSDG-----------QIYIDGFPLTDLD---I 203 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-----g-l~----~p~~G-----------~I~i~g~~i~~~~---~ 203 (377)
..|+|||++|+.|.+++|+|+||||||||++.+. . +. .|..+ -|.+|..++..-+ +
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4799999999999999999999999999998662 1 11 12222 3566666654321 1
Q ss_pred -------HHHhc----------------ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 017091 204 -------RWLRE----------------KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 259 (377)
Q Consensus 204 -------~~~r~----------------~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (377)
..+|+ .+.|..++...+ .+|+.||+.|.... ....+.. +.++.+..
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~-~~~~~~~---------~~L~~vgL 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI-PKIARKL---------QTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh-hhHHHHH---------HHHHHcCC
Confidence 01111 144444444332 56777777653211 0111222 23333333
Q ss_pred Ccc-cccCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 260 GYE-TLVDDDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 260 ~~~-~~~~~~~LSgGq~QRv~iAral~~~---p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
++. ......+|||||+||++|||+|+.+ |+++||||||++||+.....+.+.|+++.+ .|.|+|+|||+++.+
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvIiitH~~~~i 235 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD---KGNTVVVIEHNLDVI 235 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHH
Confidence 321 1122367999999999999999996 799999999999999999999999999864 478999999999999
Q ss_pred HhcCeEEEE------eCCEEEEEcCh
Q 017091 336 KAVDRIVVI------DDGRIIEVGNH 355 (377)
Q Consensus 336 ~~~d~v~~l------~~G~i~~~g~~ 355 (377)
..||++++| ++|+|++.|++
T Consensus 236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 889999999 89999999874
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2e-34 Score=246.70 Aligned_cols=212 Identities=22% Similarity=0.364 Sum_probs=173.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++||+..- -|-.+|..+..||++-+|||||||||||+-.++|+. |.+|+|.++|.++..++..++.++-
T Consensus 3 l~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhR 74 (248)
T COG4138 3 LMQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHR 74 (248)
T ss_pred eeeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHH
Confidence 47888887532 477899999999999999999999999999999998 6899999999999999888888889
Q ss_pred EEEccCC-cCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC---
Q 017091 211 GFVGQEP-QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--- 286 (377)
Q Consensus 211 ~~v~Q~~-~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~--- 286 (377)
+|+.|+. ..|.+-|+..+.+..|.......+.+.+...++.+.+.+. .+.|||||.|||-+|-..++
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs---------~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS---------TNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhh---------hhhcCcccceeeEEeEEEEEecC
Confidence 9999876 4678999999987644322223333444444333322211 26799999999999998875
Q ss_pred --C--CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-HHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 287 --D--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 287 --~--p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
| .++||+|||.++||...+..+-..|.++.+ .|.+|||.+||++. ++.||+++.+..|++...|..+|++..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~---~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ---QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh---CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 379999999999999999999999998864 69999999999984 678999999999999999999999875
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
+
T Consensus 223 ~ 223 (248)
T COG4138 223 P 223 (248)
T ss_pred H
Confidence 3
No 375
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.98 E-value=2.3e-31 Score=264.57 Aligned_cols=217 Identities=26% Similarity=0.430 Sum_probs=172.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
.++++|++.. ..++|+||++++||++||.|--|||+|=|+++|.|..++.+|+|.+||+++...++. ..+..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3667766531 258999999999999999999999999999999999999999999999998876654 57788
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCCCCHH-HHHHHHHHcCHHHHHHhCCCCcccc-cCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGCPKDVKNE-DIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~LSgGq~QRv~iAra 283 (377)
|+|||.|- -++ ..+|++|+.+......... -+....++....+++..+....... ....+||||-||||.|||.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence 99999876 355 7899999977521111100 1222333334455666553221111 1235799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHH
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~ 357 (377)
|..+|++|||||||.|+|.-++.+|.++|+++.+ +|++||+||-++.++- .||||+||++|+|+..-+.++
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~---~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA---EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH---CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999975 5999999999999986 599999999999998655554
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=1.8e-31 Score=243.85 Aligned_cols=191 Identities=20% Similarity=0.194 Sum_probs=136.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHhh-CCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~-~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++ ++.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 48899997 77532 56777654 589999999999999999999995 555555555443 1111122223456
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHH--HHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 209 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA--AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 209 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
.|++++|++..... +. .+. ..+.+...+. +...++.++++..+ ..|||||+||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~-~~---r~~---gl~~~~~~~~~~l~~g~l~~~l~~~~---------~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYR-VE---RSR---GLDYDQFTRIVLLPQGEFDRFLARPV---------STLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEE-EE---Eec---CCCHHHHHHhhhhhhcchHHHhcCCc---------cccCHHHHHHHHHHHHHHh
Confidence 69999998743211 11 111 2222322221 22333444444333 5799999999999999985
Q ss_pred ----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 287 ----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 287 ----------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
+|+++||||||++||+.+...+.+.+.++++ .+.|+|+|||+++.+.. ||+++++++|-
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~---~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT---ENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 5789999999999999999999999998853 37899999999998876 89999999884
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=2.8e-31 Score=247.03 Aligned_cols=190 Identities=22% Similarity=0.291 Sum_probs=129.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------hCCCCCCC-----
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------RLYEPSDG----- 189 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----------------gl~~p~~G----- 189 (377)
.|+++|. ++|++ ..++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3677776 46754 35888887 7899999999999999999998 45556666
Q ss_pred ---eEEECCEeCC-CC--CHHHHhcceEEEccCCcCcc--ccHHHHHhc----CCCCCC-----CHHHHHHHHHHcCHHH
Q 017091 190 ---QIYIDGFPLT-DL--DIRWLREKIGFVGQEPQLLQ--MDIKSNIMY----GCPKDV-----KNEDIEWAAKQAYVHE 252 (377)
Q Consensus 190 ---~I~i~g~~i~-~~--~~~~~r~~i~~v~Q~~~l~~--~tv~eni~~----~~~~~~-----~~~~~~~~~~~~~l~~ 252 (377)
+|.+++.+-. .. ....+++.+++++|++.++. .|..|+..+ +..... ...++.+. ..+.+
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l---~~l~~ 150 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL---TNMKQ 150 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh---hhccc
Confidence 6666553211 00 11234567899888877663 355444322 111100 00011111 11100
Q ss_pred HHHhCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEE
Q 017091 253 FILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 328 (377)
Q Consensus 253 ~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~i 328 (377)
. .......||||||||++||||++ .+|+++|+||||++||+.+.+.+.+.|+++. ++.++|++
T Consensus 151 ~---------~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~----~~~~ii~~ 217 (243)
T cd03272 151 D---------EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS----DGAQFITT 217 (243)
T ss_pred c---------ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEE
Confidence 0 01123579999999999999996 3689999999999999999999999999884 26788999
Q ss_pred ecCchhHHhcCeEEEEe
Q 017091 329 AHRLSTIKAVDRIVVID 345 (377)
Q Consensus 329 tH~l~~~~~~d~v~~l~ 345 (377)
||+.+....||++++|.
T Consensus 218 ~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 218 TFRPELLEVADKFYGVK 234 (243)
T ss_pred ecCHHHHhhCCEEEEEE
Confidence 99877666799999986
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1.2e-30 Score=244.31 Aligned_cols=199 Identities=15% Similarity=0.235 Sum_probs=137.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCE-eCCCCC--HHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGF-PLTDLD--IRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~-~i~~~~--~~~~ 206 (377)
.|+++|. ++|.+. .++.+ +. ..+++|+||||||||||+++|++++.|. .|++++.|. ++-... ....
T Consensus 5 ~~~~~~f-~~~~~~---~~~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~ 75 (251)
T cd03273 5 EIILDGF-KSYATR---TVISG----FD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGIT 75 (251)
T ss_pred EEEEeCc-cccCcC---Eeecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCc
Confidence 3677776 566432 12222 22 5699999999999999999999999886 468888776 432111 1122
Q ss_pred hcceEEEccCCc---------Cc-cccHHHHHhcCCCC-------CCCHHHHHHHHHHcCHH--------------HHHH
Q 017091 207 REKIGFVGQEPQ---------LL-QMDIKSNIMYGCPK-------DVKNEDIEWAAKQAYVH--------------EFIL 255 (377)
Q Consensus 207 r~~i~~v~Q~~~---------l~-~~tv~eni~~~~~~-------~~~~~~~~~~~~~~~l~--------------~~~~ 255 (377)
+..|++++|++. +. ..||.+|+..+... ....+++.+.++.+++. +++.
T Consensus 76 ~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 76 KASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 457999999862 22 46888877654211 11233444455555442 0000
Q ss_pred hCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 017091 256 SLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 256 ~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~ 331 (377)
. .........+||||||||++|||||+ .+|+++|+||||++||+.+.+.+.+.|+++. +|.|+|+|||+
T Consensus 156 ~---~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~----~g~~ii~iSH~ 228 (251)
T cd03273 156 M---GGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF----KGSQFIVVSLK 228 (251)
T ss_pred h---HHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECC
Confidence 0 00011123579999999999999997 5789999999999999999999999999873 37899999999
Q ss_pred chhHHhcCeEEEEe
Q 017091 332 LSTIKAVDRIVVID 345 (377)
Q Consensus 332 l~~~~~~d~v~~l~ 345 (377)
.+.+..||+++-+.
T Consensus 229 ~~~~~~~d~v~~~~ 242 (251)
T cd03273 229 EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhCCEEEEEE
Confidence 77778899998875
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.96 E-value=6.8e-30 Score=231.83 Aligned_cols=165 Identities=22% Similarity=0.309 Sum_probs=127.7
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHh----hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-----cCc-cc
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLL----RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLL-QM 222 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-----~l~-~~ 222 (377)
.++++.+| +++|+||||||||||+++|. |..+|++|.+..+...+.. ...+..|++++|++ .+. ..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566777 99999999999999999994 9999988877622222222 22356799999998 223 35
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH------HHHHHHHcCCCCEEEEeCc
Q 017091 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR------IAIARAILRDPAILLLDEA 296 (377)
Q Consensus 223 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR------v~iAral~~~p~illlDEP 296 (377)
|+.+|+.+. + .+++. +.++..+ ..||+||+|| ++||||++.+|+++|+|||
T Consensus 92 ~~~~~~~~~-~----~~~~~---------~~~~~~~---------~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 92 AILENVIFC-H----QGESN---------WPLLDMR---------GRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hHhhceeee-c----hHHHH---------HHHhcCc---------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 899998764 1 22221 2223333 5799999996 7899999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 297 TSALDSESEH-YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 297 ts~LD~~~~~-~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
|++||+.+.. .+.+.+.+++++ .+.|+|++||+++.+..||++++|++
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~--~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhc--cCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999999 999999988542 26899999999998878999999964
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=3.3e-30 Score=253.25 Aligned_cols=200 Identities=25% Similarity=0.381 Sum_probs=159.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.+.+.||+|.|++++ .++++++|-|..++.+|+|||||||||||||++.|.+.|..|.|.-.-. .+
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NK 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------cc
Confidence 3589999999998753 6999999999999999999999999999999999999999998864322 23
Q ss_pred eEEEccCCc---CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 210 IGFVGQEPQ---LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 210 i~~v~Q~~~---l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+++..|+.. .+..+..|++.-..+.....+.+...+.++++.......|. .+||+|||.||++||.++.
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~--------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM--------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch--------hhcccccchhHHHHHHHhc
Confidence 455555542 24667888876432322345566667777766544433332 5799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE-EcChH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNHA 356 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~-~g~~~ 356 (377)
+|.+|||||||++||..+...+.+.|.++ .-+||+||||...+.. +++|++.++|.+.. .|+..
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~------~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF------PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc------CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 99999999999999999999999988876 2389999999999976 99999999988764 35443
No 381
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.96 E-value=6.3e-28 Score=236.04 Aligned_cols=317 Identities=21% Similarity=0.272 Sum_probs=216.5
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCcC--
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM------------IGQVS-- 68 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~------------~g~lt-- 68 (377)
++|..|+..+.+.+..++..+.+........+...++...-.++.- -.|-|.-+|+ .++.+
T Consensus 314 EEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mK-----YvWsg~GlvmvsiPI~~~t~~s~~~~~~~ 388 (728)
T KOG0064|consen 314 EEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMK-----YTWSGTGLVMVSIPILTSTLASEGTLQLS 388 (728)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhccCceEEEEeeeeecccCCCCccccc
Confidence 5788888888888888887777666544443333333322222210 1232222221 12211
Q ss_pred -HHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----------CCCcccc------ccc
Q 017091 69 -PEQ--LTKYV---LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL---L----------PSNQFLS------EGV 123 (377)
Q Consensus 69 -~g~--l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~----------~~~~~~~------~~~ 123 (377)
.|. .-.|+ -+.......+.+++..+.++.+..+-..|++++++. . ++..... ++.
T Consensus 389 e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~ 468 (728)
T KOG0064|consen 389 EEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSN 468 (728)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCC
Confidence 111 11222 223333455667777777777777777787755421 1 1110000 000
Q ss_pred ccc-----cccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 124 KLQ-----RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 124 ~~~-----~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
+.+ .....|.++||-.--|.. ..++..+||+|++|-.+.|+||||||||+|+|+|.|+.|...|...+
T Consensus 469 ~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~----- 541 (728)
T KOG0064|consen 469 PLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI----- 541 (728)
T ss_pred cCCccchhhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec-----
Confidence 000 011248999998887764 36889999999999999999999999999999999999987776543
Q ss_pred CCCCHHHHhcceEEEccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCC
Q 017091 199 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLS 271 (377)
Q Consensus 199 ~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~LS 271 (377)
+ .+.++-|+||.|++--+|.+|.|-|+.. ...++.++...++.+.++..+++ ..|.+...+- ..||
T Consensus 542 ---P---~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da~~dWkd~Ls 614 (728)
T KOG0064|consen 542 ---P---RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDAVRDWKDVLS 614 (728)
T ss_pred ---C---CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhhhccHHhhcc
Confidence 1 1345999999998778899999988642 34566778888888888765554 3456665553 4699
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 272 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 272 gGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
||||||+++||.+.++|+.-+|||.||+..++.+..+.+..++. |.+.|-|||+++..+.-...+-.
T Consensus 615 gGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~------gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 615 GGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA------GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred chHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc------CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999888765 89999999999988765444444
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=3e-30 Score=235.44 Aligned_cols=185 Identities=22% Similarity=0.245 Sum_probs=127.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|.. +|++. .+++++++ ++++|+|||||||||++++|. +++|.+... ..++++
T Consensus 5 ~l~l~nfk-~~~~~---~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~----~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAGE---QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK----MRQKKL 61 (212)
T ss_pred EEEEECcc-cCCCC---eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH----hhhhhH
Confidence 47888885 78643 59999988 899999999999999999997 334543321 123569
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHH-----HH-HHH----HcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDI-----EW-AAK----QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~-----~~-~~~----~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++++|+..++ ..|+++++.+..... ..+.. .. ... ...+. .+..++...++. ...||+|||||++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~v~~~~~~-~~~~L~~~~~~~--~~~lS~G~~~r~~ 137 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEII-DKPLLKSKGIDLDHNRFLILQGEVE-QIAQMPKKSWKN--ISNLSGGEKTLSS 137 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCC-CHHHHHHCCcCCCCCceEEcCCcEE-Eeeccccccccc--hhhcCHHHHHHHH
Confidence 9999988765 456666654431110 00000 00 000 00000 011223222222 2469999999999
Q ss_pred HHHHHcC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 280 IARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 280 iAral~~----~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
||||++. +|+++++||||++||+.+...+.+.++++. ++.|+|++||+.+....||+|++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~----~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT----KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999974 589999999999999999999999999884 35699999999776677999999964
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=8.8e-29 Score=217.81 Aligned_cols=228 Identities=23% Similarity=0.340 Sum_probs=177.4
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC----CCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~ 205 (377)
-+.++|++..+.... ...+++++|+++.+||+-|+||+||||||-..|.|+|..+- +.-..++++.++-.+++++
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 356777777774322 34699999999999999999999999999999999999762 4566788888888888877
Q ss_pred Hhc----ceEEEccCCcC--c-cccH----HHHHhcC----CC---CCCCHHHHHHHHHHcCHHH---HHHhCCCCcccc
Q 017091 206 LRE----KIGFVGQEPQL--L-QMDI----KSNIMYG----CP---KDVKNEDIEWAAKQAYVHE---FILSLPCGYETL 264 (377)
Q Consensus 206 ~r~----~i~~v~Q~~~l--~-~~tv----~eni~~~----~~---~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~ 264 (377)
.|+ .|+++||+|.- - +.+| .+||-.. .. ..-...+..+.+.++|+.+ ....+|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP------ 156 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP------ 156 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc------
Confidence 664 58899999963 2 3344 3444211 00 0111233445556666643 233444
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEE
Q 017091 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 343 (377)
Q Consensus 265 ~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~ 343 (377)
.+|--||-|+|.||.|++.+|++||.||||+++|+.++.+++++|..+.+. +|.||++++||+..+.. ||+|-|
T Consensus 157 ---~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn--~~TtILL~s~Dl~~is~W~d~i~V 231 (330)
T COG4170 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN--SNTTILLISHDLQMISQWADKINV 231 (330)
T ss_pred ---chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc--CCceEEEEcccHHHHHHHhhheEE
Confidence 579999999999999999999999999999999999999999999998764 68899999999999965 999999
Q ss_pred EeCCEEEEEcChHHHhhc-CHHHHHHH
Q 017091 344 IDDGRIIEVGNHAELLHK-GRLYAKLV 369 (377)
Q Consensus 344 l~~G~i~~~g~~~~l~~~-~~~~~~~~ 369 (377)
|.-|+-+|.+..+++++. +..|.+.+
T Consensus 232 lYCGQ~~ESa~~e~l~~~PhHPYTqAL 258 (330)
T COG4170 232 LYCGQTVESAPSEELVTMPHHPYTQAL 258 (330)
T ss_pred EEecccccccchhHHhcCCCCchHHHH
Confidence 999999999999999875 34465544
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=5e-28 Score=269.72 Aligned_cols=214 Identities=21% Similarity=0.310 Sum_probs=146.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHhhCCCCCCC----e----EEE
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN---------LLLRLYEPSDG----Q----IYI 193 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~---------~l~gl~~p~~G----~----I~i 193 (377)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .|.|...|..+ . |.+
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 366776641 3799999999999999999999999999999 55664333111 1 234
Q ss_pred CCEeCCCCC----HH------HHh---------c-----ceEEEccC------------------C--------------
Q 017091 194 DGFPLTDLD----IR------WLR---------E-----KIGFVGQE------------------P-------------- 217 (377)
Q Consensus 194 ~g~~i~~~~----~~------~~r---------~-----~i~~v~Q~------------------~-------------- 217 (377)
|-.++...+ .. ++| + ...|.|+. +
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 333332210 00 222 1 12234442 0
Q ss_pred ------cCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHc
Q 017091 218 ------QLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 218 ------~l~-~~tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~ 285 (377)
..+ ..||.||+.++.... ....++.+ . + +.++.+..++. ......+|||||+||++|||||+
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~---~--l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHE---K--I-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHH---H--H-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHh
Confidence 022 347888887652100 00111111 1 1 23344333322 12223679999999999999997
Q ss_pred ---CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEe------CCEEEEEcChH
Q 017091 286 ---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID------DGRIIEVGNHA 356 (377)
Q Consensus 286 ---~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~------~G~i~~~g~~~ 356 (377)
.+|+++||||||++||+.+.+.+.+.|.++.+ .|.|||+|||+++.+..||++++|. +|+++..|+++
T Consensus 826 ~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~---~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 826 APSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH---QGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred hcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 69999999999999999999999999999864 4889999999999996699999996 79999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 903 el~~~ 907 (1809)
T PRK00635 903 ELIHL 907 (1809)
T ss_pred HHHhc
Confidence 98764
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=4.4e-28 Score=260.07 Aligned_cols=111 Identities=31% Similarity=0.487 Sum_probs=94.5
Q ss_pred HHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 017091 252 EFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327 (377)
Q Consensus 252 ~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p---~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~ 327 (377)
+.++.+..++.. .....+|||||+||+.|||+|+.+| +++||||||+|||+.....+.+.|+++.+ .|.|||+
T Consensus 812 ~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~---~G~TVIi 888 (943)
T PRK00349 812 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD---KGNTVVV 888 (943)
T ss_pred HHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEE
Confidence 345555544422 2224679999999999999999999 99999999999999999999999999864 4889999
Q ss_pred EecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcCHHH
Q 017091 328 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 328 itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~ 365 (377)
|||+++.+..||+|++| ++|+|++.|+++++......+
T Consensus 889 itH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 889 IEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred EecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999889999999 799999999999998766444
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=231.91 Aligned_cols=217 Identities=26% Similarity=0.462 Sum_probs=174.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC-CCCCHHHHh-c
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLR-E 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i-~~~~~~~~r-~ 208 (377)
.++++|++..-.. +.+.+++|||+|++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...++.++| .
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 5999999986543 24689999999999999999999999999999999999999999999999997 566776655 5
Q ss_pred ceEEEccCCc---C-ccccHHHHHhcCCCCC--------CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHH
Q 017091 209 KIGFVGQEPQ---L-LQMDIKSNIMYGCPKD--------VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQK 275 (377)
Q Consensus 209 ~i~~v~Q~~~---l-~~~tv~eni~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~ 275 (377)
.+||||.|.+ + ..+|+.||+.++.... .....+.. ...+.++++.-- -........||||.+
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~-----~a~~li~~fdVr~~~~~~~a~~LSGGNq 409 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK-----FARELIEEFDVRAPSPDAPARSLSGGNQ 409 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH-----HHHHHHHHcCccCCCCCcchhhcCCcce
Confidence 6999999874 3 4789999997753211 11122221 123344443211 111112257999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||+-+||-|.++|++||+.+||-|||..+.+.+.+.|.+.++ .|+.|++||-|++++-. ||||.||.+|+|+...+
T Consensus 410 QK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~---~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 410 QKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD---AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred ehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh---cCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 999999999999999999999999999999999999998864 59999999999999865 99999999999998877
Q ss_pred hHH
Q 017091 355 HAE 357 (377)
Q Consensus 355 ~~~ 357 (377)
+++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 765
No 387
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=7.4e-29 Score=264.80 Aligned_cols=212 Identities=28% Similarity=0.483 Sum_probs=167.5
Q ss_pred EEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--CCCCeEEECCEeCCCCCHHHHhcc
Q 017091 133 QFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 133 ~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..+|+.+.-+.+ ..+++|+|||=-++||-.+||+|+|||||||||++|+|-.. ..+|+|+++|.+..+ +..++.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 344454443211 23579999999999999999999999999999999998753 248999999998753 567888
Q ss_pred eEEEccCC-cCccccHHHHHhcCC----CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHH
Q 017091 210 IGFVGQEP-QLLQMDIKSNIMYGC----PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRI 278 (377)
Q Consensus 210 i~~v~Q~~-~l~~~tv~eni~~~~----~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv 278 (377)
+|||.|+. ++-..||+|-+.|.. +.+.+. +.+++..+..+++++.+.+ +| +..||..||+|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~dai-------VG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADAL-------VGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhh-------ccCCCCCCCHHHhcee
Confidence 99999977 455789999998742 223332 2344455555555443332 22 256999999999
Q ss_pred HHHHHHcCCC-CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh--HHhcCeEEEEe-CCEEEEEcC
Q 017091 279 AIARAILRDP-AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVID-DGRIIEVGN 354 (377)
Q Consensus 279 ~iAral~~~p-~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~--~~~~d~v~~l~-~G~i~~~g~ 354 (377)
.||--|+.|| .||+|||||||||..+...+++.++++.+ .|+||+++-|.++. .+..|+++.|+ +|+.+..|+
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~---tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD---TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh---cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecC
Confidence 9999999999 99999999999999999999999999974 69999999999985 36699999997 689999997
Q ss_pred hHH
Q 017091 355 HAE 357 (377)
Q Consensus 355 ~~~ 357 (377)
..+
T Consensus 1016 lG~ 1018 (1391)
T KOG0065|consen 1016 LGE 1018 (1391)
T ss_pred ccc
Confidence 643
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=1.3e-27 Score=223.24 Aligned_cols=202 Identities=19% Similarity=0.215 Sum_probs=132.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe-C-CC-----CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-L-TD-----LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-i-~~-----~~~ 203 (377)
.|+++|. ++|.+. . +|...++ +++|+||||||||||+.+|+++..+..|++..++.+ + .. .+.
T Consensus 3 ~i~l~nf-~~~~~~---~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~ 72 (247)
T cd03275 3 RLELENF-KSYKGR---H-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDS 72 (247)
T ss_pred EEEEECc-cccCCC---e-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCC
Confidence 3778886 566421 1 1222334 999999999999999999999998888887654421 1 10 111
Q ss_pred HHHhcceEEEccCCc--CccccHHHHH-hcCC-CCCCCHHHHHHHHHHcCHH--------------HHHHhCCCCccccc
Q 017091 204 RWLREKIGFVGQEPQ--LLQMDIKSNI-MYGC-PKDVKNEDIEWAAKQAYVH--------------EFILSLPCGYETLV 265 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~--l~~~tv~eni-~~~~-~~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~ 265 (377)
....-.+.|..|++. .+..++.+.. .+.. ....+.+++.+.++..++. ++.+..|.+. ...
T Consensus 73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~-~~~ 151 (247)
T cd03275 73 NSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGK-RFR 151 (247)
T ss_pred ceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcch-hhh
Confidence 122233555555442 2233333221 1111 1123345555566666552 2222222111 011
Q ss_pred CCCCCChHHHHHHHHHHHHcCC----CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 266 DDDLLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 266 ~~~~LSgGq~QRv~iAral~~~----p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
...+||||||||++||||++.+ |+++||||||++||+.....+.+.|.++.+ .|.++|+|||+.+.+..||++
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~---~g~~vi~isH~~~~~~~~d~i 228 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG---PNFQFIVISLKEEFFSKADAL 228 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc---CCcEEEEEECCHHHHhhCCeE
Confidence 1256999999999999999864 999999999999999999999999998853 378999999998888789999
Q ss_pred EEEeC
Q 017091 342 VVIDD 346 (377)
Q Consensus 342 ~~l~~ 346 (377)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 99864
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.94 E-value=1.8e-26 Score=223.00 Aligned_cols=172 Identities=27% Similarity=0.376 Sum_probs=135.3
Q ss_pred ceeeeeEEE-----eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc-Cccc
Q 017091 149 ILNHVCLTI-----EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LLQM 222 (377)
Q Consensus 149 vL~~isl~i-----~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~~~ 222 (377)
.+.++.|++ ..||+++++||||-||||++|+|+|.++|++|+ ..+ -+|+|=||-.. -|++
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCC
Confidence 455666665 456889999999999999999999999999997 222 24889898653 2689
Q ss_pred cHHHHHhcCCCCCCC-HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCC
Q 017091 223 DIKSNIMYGCPKDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301 (377)
Q Consensus 223 tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD 301 (377)
||.+.+.-..+.... ..-..+..+-..+++.+++.- .+|||||.|||+||.||.++++++|||||++.||
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v---------~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD 487 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPV---------DELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHhccc---------ccCCchhHHHHHHHHHhccccCEEEecCchhhcc
Confidence 999988643221111 111123445556666655432 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 345 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~ 345 (377)
.+.+-.+.+.|+++... .++|.++|.||+-.+.. +||++|++
T Consensus 488 vEqR~~vakvIRR~~e~--~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 488 VEQRIIVAKVIRRFIEN--NEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHHHHhh--cCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999998753 57899999999999987 99999996
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.9e-26 Score=247.03 Aligned_cols=89 Identities=34% Similarity=0.540 Sum_probs=82.7
Q ss_pred CCCCChHHHHHHHHHHHHcC---CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 267 DDLLSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~~---~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
..+|||||+||++|||+|+. +|+++||||||++||+.....+.+.|+++.+ .|.|||+|||+++.+..||+|++
T Consensus 826 ~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~---~G~TVIvi~H~~~~i~~aD~ii~ 902 (924)
T TIGR00630 826 ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD---QGNTVVVIEHNLDVIKTADYIID 902 (924)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEE
Confidence 36799999999999999997 5999999999999999999999999999864 48899999999999988999999
Q ss_pred E------eCCEEEEEcChHHH
Q 017091 344 I------DDGRIIEVGNHAEL 358 (377)
Q Consensus 344 l------~~G~i~~~g~~~~l 358 (377)
| ++|+|++.|+++++
T Consensus 903 Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 903 LGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ecCCccCCCCEEEEeCCHHHh
Confidence 9 79999999999875
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=9.3e-27 Score=210.26 Aligned_cols=177 Identities=20% Similarity=0.202 Sum_probs=118.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC-CHHHHhcceEEEccCCcCccccHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
.++++++++.+| +.+|+||||||||||+..|.-....... ....|..+..+ ....-...|.+.+|+..++. |
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C
Confidence 346788888887 8899999999999999999754332211 11112211110 00011345788888766554 1
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCcCCCCCHH
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSE 303 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral----~~~p~illlDEPts~LD~~ 303 (377)
+ ..... ...+.++++. . ........+||+|||||++||+|+ +.+|+++||||||++||+.
T Consensus 84 -----~--~~~~~------~~~~~~~l~~-~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 -----P--LCVLS------QDMARSFLTS-N--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred -----c--CCHHH------HHHHHHHhcc-c--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1112233332 1 111122367999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 304 ~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
+...+.+.|.++.++...+.|||++||+++.+..+|+|.+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999887532112468999999999998889999998753
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=6.2e-26 Score=223.25 Aligned_cols=218 Identities=22% Similarity=0.371 Sum_probs=139.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE--CCEeCCCCCHHHHh
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI--DGFPLTDLDIRWLR 207 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i--~g~~i~~~~~~~~r 207 (377)
..+.++|++++|.+ ..+++|++|++.+|+.+||+|+|||||||+|++|.|-..|..=++-+ -.+++..-....+.
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 35999999999975 36999999999999999999999999999999999998886544322 11111110001111
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHH---HHHHHHHHcCH-------HHHHHhCCCCcccccC---CCCCChHH
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE---DIEWAAKQAYV-------HEFILSLPCGYETLVD---DDLLSGGQ 274 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~~~l-------~~~~~~~~~~~~~~~~---~~~LSgGq 274 (377)
.-+-...+...-.. --.|.+.-.+. +...+ .+..-++..+. ...+..+ |.....- ...||||+
T Consensus 151 ~v~~~~~~e~~rle-~~~E~l~~~~d-~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 151 AVVMETDHERKRLE-YLAEDLAQACD-DKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHhhhhHHHHHHHH-HHHHHHHhhcc-chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchH
Confidence 00001111000000 00111111100 00000 11111111111 1111111 2111111 24699999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCe-EEEEEecCchhHHh-cCeEEEEeCCE-EEE
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDDGR-IIE 351 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~-tvi~itH~l~~~~~-~d~v~~l~~G~-i~~ 351 (377)
|.|++|||||..+|++|||||||++||+++..-+.+.|.+. .+ ++|+++|.-+++.. |..|+.|++++ +..
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~------d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY------DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc------cCceEEEEecchhhhhhHhhhhheecccceeee
Confidence 99999999999999999999999999999998888888776 33 89999999999976 99999999999 556
Q ss_pred EcChHHHhh
Q 017091 352 VGNHAELLH 360 (377)
Q Consensus 352 ~g~~~~l~~ 360 (377)
.|+.+....
T Consensus 301 ~Gnydqy~~ 309 (614)
T KOG0927|consen 301 EGNYDQYVK 309 (614)
T ss_pred cCCHHHHhh
Confidence 777776653
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.7e-26 Score=221.89 Aligned_cols=195 Identities=23% Similarity=0.336 Sum_probs=161.4
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.+++.+|+|.|+.+.. +.+.+++++++.-+.++++|+||+||||++|++.|-..|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 46999999999975432 799999999999999999999999999999999999999999887654 567
Q ss_pred eEEEccCCcC-ccccH--HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 210 IGFVGQEPQL-LQMDI--KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 210 i~~v~Q~~~l-~~~tv--~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
|+|-+|...= ++..+ .|-..-. .+...+++++..+..+|+..-+...+. ..||||||-||++|.+...
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~-~pG~~~ee~r~hl~~~Gl~g~la~~si--------~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKS-FPGKTEEEIRRHLGSFGLSGELALQSI--------ASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHh-CCCCCHHHHHHHHHhcCCCchhhhccc--------cccCCcchhHHHHHHHhcC
Confidence 9999997642 34333 3333222 224478888888888887655543331 4699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
+|.+|+|||||+.||.++-..+.+.|+.+ +-.||+||||.+++.. |+.+|+.++|++..
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F------~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF------NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc------CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999998888888877 2379999999999987 99999999999975
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.7e-26 Score=224.70 Aligned_cols=199 Identities=23% Similarity=0.296 Sum_probs=138.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|..+|++..|+++ .+|++-++++..|..+||+||||+|||||||+|+. |.|.....+ .++|-
T Consensus 80 Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g-- 142 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRG-- 142 (582)
T ss_pred ceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheec--
Confidence 58999999999864 69999999999999999999999999999999987 444333221 11111
Q ss_pred EEEccCC-cCc-cccHHHHHhcCC--CCCCCHHHHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 211 GFVGQEP-QLL-QMDIKSNIMYGC--PKDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 211 ~~v~Q~~-~l~-~~tv~eni~~~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
-+++... .+- +.++.+-+.-.. ....+.+++.. ++.-.+..+-....|. ..||||-|-|++|||||.
T Consensus 143 ~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt--------~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 143 DDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT--------KSLSGGWRMRLALARALF 214 (582)
T ss_pred cchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc--------cccCcchhhHHHHHHHHh
Confidence 1111111 111 222333332110 00001222322 3334444333333332 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHHhh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 360 (377)
.+||||||||||+.||..+..-+.+.|..+ +.|+|+||||-+++.. |..|+.+++-++- +.|+.+++..
T Consensus 215 ~~pDlLLLDEPTNhLDv~av~WLe~yL~t~------~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 215 AKPDLLLLDEPTNHLDVVAVAWLENYLQTW------KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred cCCCEEeecCCcccchhHHHHHHHHHHhhC------CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999999988888887765 4799999999999976 8889999886663 4577766654
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.5e-25 Score=215.26 Aligned_cols=198 Identities=26% Similarity=0.420 Sum_probs=150.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+-+.||+|.|++. ++.+++++|-|.-...+|||||||.||||||++|.|-+.|..|+.+-+ .|-+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 57899999999874 589999999999999999999999999999999999999999987532 24469
Q ss_pred EEEccCCc--Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
|+..|+.. |- ..|-.|.+.-.. ....++.+..+-.+++...... +....|||||+-||++|---+..
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F--Nlpyq~ARK~LG~fGL~sHAHT--------ikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF--NLPYQEARKQLGTFGLASHAHT--------IKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc--CCChHHHHHHhhhhhhhhccce--------EeeeecCCcchHHHHHHHHhcCC
Confidence 99998763 32 457777775432 2233334444444444322111 11246999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhc-CeEEEEeCCEEEE-EcChHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE-VGNHAE 357 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~-d~v~~l~~G~i~~-~g~~~~ 357 (377)
|+||||||||++||.++...+.+.|.++. -.|||||||-.++... -..||+++..|-+ .|..++
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~------GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN------GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc------CcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999999999999999999999998872 3799999999988652 3566666654433 344443
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.91 E-value=2.7e-23 Score=182.65 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=150.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC-CCH------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDI------ 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-~~~------ 203 (377)
.|++.++.|+|+.. .|++-|+|++++.|....+||.||||||||+|+|+|-.-.-.|.|.+.|.+--. -..
T Consensus 13 aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred eEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 59999999999865 389999999999999999999999999999999999887777999999976422 111
Q ss_pred ----HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 204 ----RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 204 ----~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
.++++.+++--.-|.--..++.+-| ++... ...++-+ .+++-+. .+-.-.-+.+|-|||+||.
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~g-~dp~Rre---------~LI~iLD--Idl~WRmHkvSDGqrRRVQ 157 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVGG-DDPERRE---------KLIDILD--IDLRWRMHKVSDGQRRRVQ 157 (291)
T ss_pred eEecccccccccccccccccccccHHHHH-hhccC-CChhHhh---------hhhhhee--ccceEEEeeccccchhhhH
Confidence 1223333332222211134554433 33221 1112111 1122211 1111122569999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|+..|++.=++|||||-|-.||..++..+++.+++-.++ +|.|||+.||-.+-++. ..+++.|.+|+++..-
T Consensus 158 icMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~--RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 158 ICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ--RGATIVYATHIFDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred HHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh--cCcEEEEEeeeccchhhcchhEEEecCCeeeecc
Confidence 999999999999999999999999999999999876553 58999999999988765 9999999999998743
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.90 E-value=2.4e-23 Score=184.84 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=72.9
Q ss_pred hCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 017091 256 SLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 256 ~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~ 331 (377)
.+|.|..+.+ ||||||||++|||+++ .+|+++|+|||+++||+.....+.+.+.++.+ .|.|+|++||+
T Consensus 85 ~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~---~g~tiIiiSH~ 157 (178)
T cd03239 85 LVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK---HTSQFIVITLK 157 (178)
T ss_pred EecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEECC
Confidence 3455544444 8999999999999996 69999999999999999999999999998853 36899999999
Q ss_pred chhHHhcCeEEEEeC
Q 017091 332 LSTIKAVDRIVVIDD 346 (377)
Q Consensus 332 l~~~~~~d~v~~l~~ 346 (377)
++.+..+|+++.+.+
T Consensus 158 ~~~~~~adrvi~i~~ 172 (178)
T cd03239 158 KEMFENADKLIGVLF 172 (178)
T ss_pred HHHHhhCCeEEEEEE
Confidence 998888999999975
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.90 E-value=1.5e-23 Score=189.64 Aligned_cols=147 Identities=17% Similarity=0.125 Sum_probs=108.3
Q ss_pred ceeeeeEEEeCCc-EEEEEcCCCCcHHHHHHHHh--------hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC
Q 017091 149 ILNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLL--------RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 219 (377)
Q Consensus 149 vL~~isl~i~~Ge-~~~ivG~nGsGKSTLl~~l~--------gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 219 (377)
.+-++||++.+|+ +++|+||||||||||+|+|. |.+.|.... ..++|+.|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~-----------------~~~~~~~~~~~~ 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG-----------------SSLPVFENIFAD 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc-----------------ccCcCccEEEEe
Confidence 4568999999995 79999999999999999998 444332110 124444443211
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC
Q 017091 220 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299 (377)
Q Consensus 220 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~ 299 (377)
+ +. .+ .+.. + ...+|+||||++.+++++ .+|+++|+||||++
T Consensus 79 l----------g~-----~~-------------~l~~---~------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 79 I----------GD-----EQ-------------SIEQ---S------LSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred c----------Cc-----hh-------------hhhc---C------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 0 00 00 0110 0 035899999999999885 89999999999999
Q ss_pred CCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 300 LDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 300 LD~~~~~~i~-~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
+|+.....+. ..++.+.+ .+.|+|++||+.+....||++++|++|++..++
T Consensus 121 lD~~~~~~i~~~~l~~l~~---~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLE---RGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999988886 46777653 378999999996655669999999999998763
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=2.6e-22 Score=183.28 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=111.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-h-----cceEEEccCCcCcccc
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-R-----EKIGFVGQEPQLLQMD 223 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r-----~~i~~v~Q~~~l~~~t 223 (377)
++++.+++.+| +.+|+||||||||||+..|.-..-...... .... ...++ + ..|-..++...- .=
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~-----~~~~~i~~g~~~~~v~~~~~~~~~--~~ 84 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAK-----KVGEFVKRGCDEGTIEIELYGNPG--NI 84 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-cccc-----CHHHHhhCCCCcEEEEEEEEeCCC--cc
Confidence 35566666555 779999999999999999876552211100 0000 01111 1 112222221100 00
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCcCC
Q 017091 224 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATS 298 (377)
Q Consensus 224 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral----~~~p~illlDEPts 298 (377)
..+|+.+. ...+.+.+..... -.+.+..++.+... ...+..||||||||+.+|+++ +.+|+++|+||||+
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~-~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLS-PIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCC-hHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 13333321 1223333333322 22444555544322 223468999999999877554 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchhHH-hcC--eEEEEeCCE
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIK-AVD--RIVVIDDGR 348 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~itH~l~~~~-~~d--~v~~l~~G~ 348 (377)
+||+.+...+.+.+.++.++ .| .|+|++||++.... .|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~--~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACK--EGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhc--CCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999988542 24 58999999987654 465 788888886
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.6e-22 Score=191.91 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=68.8
Q ss_pred CCChHHHHHHHHHHHHcC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~----~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.|||||+||+++|++++. +|+++|+||||++||+.+...+.+.+.++. .+.|+|++||+++....||++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~----~~~tii~isH~~~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS----RSHQVLCITHLPQVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEechHHHHHhcCcEEEE
Confidence 499999999999997654 999999999999999999999999999874 367999999999977779999999
Q ss_pred eCCEE
Q 017091 345 DDGRI 349 (377)
Q Consensus 345 ~~G~i 349 (377)
++|..
T Consensus 246 ~~~~~ 250 (276)
T cd03241 246 EKEVE 250 (276)
T ss_pred EEecC
Confidence 88643
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=1.7e-22 Score=216.38 Aligned_cols=205 Identities=23% Similarity=0.385 Sum_probs=163.7
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC---CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 222 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 222 (377)
..+|+|+|.-++||+.+.++||.|||||||++.++|-.+- ..|+|.+||.+.+.... ++.++|++|+...+ .+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4699999999999999999999999999999999998753 35799999999887654 67799999987666 79
Q ss_pred cHHHHHhcCCC-------CC-CCHHHHHHHHHHcCHHHHHHhC--CCCcccccCC---CCCChHHHHHHHHHHHHcCCCC
Q 017091 223 DIKSNIMYGCP-------KD-VKNEDIEWAAKQAYVHEFILSL--PCGYETLVDD---DLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 223 tv~eni~~~~~-------~~-~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~---~~LSgGq~QRv~iAral~~~p~ 289 (377)
||+|-+.|... .+ ..+++-..+ -.+..++.+ ....+|.+|. ...|||||+||.+|-+++.+|+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~----~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAA----MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHH----HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 99999977421 01 111111110 111222222 3356777774 4699999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh--HHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~--~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
++..||+|.|||..+.-++.+.|+++.+. .+.|.+++-|..+. ....|.|++|.+|+++..|+.++.+.
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~--~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHI--TGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhh--hcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999999998764 47789998888764 45589999999999999999888753
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=4.3e-22 Score=192.77 Aligned_cols=190 Identities=24% Similarity=0.301 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC-----CCCCH-------
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-----TDLDI------- 203 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i-----~~~~~------- 203 (377)
++.-+|+.+. ..|..+- ..++|+++||+||||-||||-+|+|+|.+.|.=|+- ++.+- ..+.-
T Consensus 79 e~vHRYg~Ng--FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGVNG--FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccCCc--eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHH
Confidence 3556776432 2333322 367899999999999999999999999999987753 22110 00000
Q ss_pred HHHhc---ceEEEcc----CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 204 RWLRE---KIGFVGQ----EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 204 ~~~r~---~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
+.+.. ++..=|| -|-.+.++|.|-+.-... .....+..++.++.+.+++- .++|||||.|
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de----~g~~devve~l~L~nvl~r~---------v~~LSGGELQ 220 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE----RGKFDEVVERLGLENVLDRD---------VSELSGGELQ 220 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh----cCcHHHHHHHhcchhhhhhh---------hhhcCchHHH
Confidence 01110 1222233 233345677776643211 01123344445555544432 2579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
|+|||.|++++++++++|||||-||...+-...+.++++.+ .+++||+|.||+..+.. +|-|.++..
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~---~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE---DGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhc---cCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999999999999999999999999999964 37899999999999987 899988863
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.86 E-value=1.8e-21 Score=170.35 Aligned_cols=137 Identities=24% Similarity=0.283 Sum_probs=100.8
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE-EccCCcCccccHHHHHhcC
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIKSNIMYG 231 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~-v~Q~~~l~~~tv~eni~~~ 231 (377)
.++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.|+ +++....|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3444555669999999999999999998766655555443310 00 1111 11111000
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC----CCCEEEEeCcCCCCCHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHY 307 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~----~p~illlDEPts~LD~~~~~~ 307 (377)
+.. ...||+||+||+++||+|.. +|+++|+|||++++|+.....
T Consensus 72 ----------------------i~~----------~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 ----------------------IFT----------RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ----------------------ehh----------eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 000 02389999999999999986 789999999999999999999
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 308 i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+.+.+.++.+ ++.++|++||+++....+|+++.|+.
T Consensus 120 l~~~l~~~~~---~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLV---KGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHh---cCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 9999988754 26799999999999988999999964
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.86 E-value=3.8e-21 Score=184.29 Aligned_cols=180 Identities=26% Similarity=0.406 Sum_probs=137.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--------CCCCCCeEEECCEeCCCCCHHHHhcceEEEccC--
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE-- 216 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~-- 216 (377)
..+|+|+||+++||++++|+|+|||||||++++|+|. |+|++|.|.+--..+ -+++|-+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~E 464 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYE 464 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCcccc
Confidence 4689999999999999999999999999999999997 679999987632221 2344443
Q ss_pred CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCc
Q 017091 217 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 296 (377)
Q Consensus 217 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEP 296 (377)
|.+-..|+.|.+.-- ..+ .....+.+..+++.+..-. ......||-|||.|..||+++...|.+++.||-
T Consensus 465 p~f~~~tilehl~s~-tGD--~~~AveILnraGlsDAvly-------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 465 PEFGEVTILEHLRSK-TGD--LNAAVEILNRAGLSDAVLY-------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred cccCchhHHHHHhhc-cCc--hhHHHHHHHhhccchhhhh-------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 332245777776531 111 1122345666666543211 111257999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEE
Q 017091 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRI 349 (377)
Q Consensus 297 ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i 349 (377)
-|.||+.+..++..-|.++.++ .|.|++++||+.+.... -|.++.+.=|+.
T Consensus 535 ~AhLD~~TA~rVArkiselaRe--~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 535 AAHLDELTAVRVARKISELARE--AGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 9999999999999999999865 58999999999999864 599988876654
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.85 E-value=5.5e-21 Score=213.86 Aligned_cols=111 Identities=24% Similarity=0.350 Sum_probs=96.2
Q ss_pred HHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 017091 252 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327 (377)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~---p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~ 327 (377)
+.+..+..||.+.-.. .+|||||.||+-||.-|..+ +.++||||||.||++...+++++.|+++.. .|.|||+
T Consensus 1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~---~g~tviv 1757 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS---LGHSVIY 1757 (1809)
T ss_pred HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEE
Confidence 3456667777665443 57999999999999999876 789999999999999999999999999874 5899999
Q ss_pred EecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcCHHH
Q 017091 328 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 328 itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~ 365 (377)
|.||++.++.||+|+-| +.|+|++.|+|+++.+....|
T Consensus 1758 ieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~ 1801 (1809)
T PRK00635 1758 IDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSL 1801 (1809)
T ss_pred EeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCc
Confidence 99999999999999999 468999999999998765444
No 406
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.3e-20 Score=193.21 Aligned_cols=110 Identities=32% Similarity=0.491 Sum_probs=94.0
Q ss_pred hCCCCcccccCC-CCCChHHHHHHHHHHHHcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 017091 256 SLPCGYETLVDD-DLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 256 ~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~p---~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~ 331 (377)
....||-+.--+ .+|||||.|||=||.-|.+.. -++||||||.||-....+++++.|.++.. +|.|||+|.|+
T Consensus 808 dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd---~GnTViVIEHN 884 (935)
T COG0178 808 DVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD---KGNTVIVIEHN 884 (935)
T ss_pred HcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecc
Confidence 334454433222 579999999999999999887 99999999999999999999999999974 58999999999
Q ss_pred chhHHhcCeEEEE------eCCEEEEEcChHHHhhcCHHHHHH
Q 017091 332 LSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 332 l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
|+.++.||+|+-| ..|+|++.|+|+++.+....|.--
T Consensus 885 LdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~ 927 (935)
T COG0178 885 LDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGK 927 (935)
T ss_pred cceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHH
Confidence 9999999999999 479999999999999876655443
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.84 E-value=3.9e-21 Score=176.52 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=110.4
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE-EEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~e 226 (377)
.+.+|++++.+++++++|+||||||||||+++++- ..+..++| |||.+...+ .+.+
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~--~~~~ 74 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADI--PIVD 74 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEE--eccc
Confidence 68999999999999999999999999999999981 12234566 777654321 1122
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCc---CCCCC
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSALD 301 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~illlDEP---ts~LD 301 (377)
.+. ...++.+.+ ...+|.|++|+..+++++ +.+|+++||||| |+++|
T Consensus 75 ~il----------------~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 75 CIL----------------ARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred eeE----------------eeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 211 111111111 135899999999999999 899999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
+...... .++.+.+ ..|.++|++||+.+....||++..+++|++...++
T Consensus 127 ~~~~~~~--il~~l~~--~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAWA--IAEYIAT--QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHH--HHHHHHh--cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9877533 3344432 14789999999744445699999999999977654
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.83 E-value=6.9e-21 Score=172.07 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=100.7
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 226 (377)
.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++... .+++|...+| ..|+.|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 5788887765 79999999999999999999988553 22356554321 3666755566 689999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
|+.++... ...+. ..+.+.++.+. + .+|+++|+||||+++|+....
T Consensus 79 ~l~~~~s~--~~~e~------~~~~~iL~~~~-----------~---------------~~p~llllDEp~~glD~~~~~ 124 (199)
T cd03283 79 DLRDGISY--FYAEL------RRLKEIVEKAK-----------K---------------GEPVLFLLDEIFKGTNSRERQ 124 (199)
T ss_pred ccccccCh--HHHHH------HHHHHHHHhcc-----------C---------------CCCeEEEEecccCCCCHHHHH
Confidence 99876321 11111 12334444322 1 799999999999999999887
Q ss_pred HHH-HHHHHhhccCCCCeEEEEEecCchhHHh---cCeEEEE
Q 017091 307 YVK-GVLHALRNDCKTKRTVIVIAHRLSTIKA---VDRIVVI 344 (377)
Q Consensus 307 ~i~-~~l~~l~~~~~~g~tvi~itH~l~~~~~---~d~v~~l 344 (377)
.+. ..++.+.+ .+.|+|++||+++.+.. .++|-.+
T Consensus 125 ~l~~~ll~~l~~---~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 125 AASAAVLKFLKN---KNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 765 46777753 37899999999998754 3455443
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.81 E-value=2.3e-20 Score=169.06 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=104.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC-CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~ 229 (377)
-..++++.+|++++|+||||||||||+++|++. +.+..|.... . .+..+++..|....+ ...+++.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----------~-~~~~i~~~dqi~~~~--~~~d~i~ 86 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----------A-ESASIPLVDRIFTRI--GAEDSIS 86 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----------c-cccccCCcCEEEEEe--cCccccc
Confidence 445566668999999999999999999999943 3233332110 0 012344433321111 1111110
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHH
Q 017091 230 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~ 309 (377)
. + ...+|++++| +..+.+++.+|+++|+||||+++|+.....+.
T Consensus 87 ~-----------------------------~------~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 87 D-----------------------------G------RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred C-----------------------------C------ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 0 0 0235666655 66667888999999999999999999887775
Q ss_pred H-HHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHH
Q 017091 310 G-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 310 ~-~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~ 357 (377)
. .++.+.+ .+.++|++||+.+.+..++++..++.|++...+...+
T Consensus 131 ~~ll~~l~~---~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLE---KGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHh---cCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 4555543 3789999999998888899999999999988876543
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.6e-19 Score=167.66 Aligned_cols=74 Identities=23% Similarity=0.343 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-c
Q 017091 269 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 338 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~ 338 (377)
.+|+||||+++|||+|+ .+|+++|+||||++||+.....+.+.+.++ + .+++++|+...+.. |
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------V-QTFVTTTDLADFDALW 255 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------C-CEEEEeCCchhccchh
Confidence 48999999999999985 799999999999999999999998888764 2 46667766666543 5
Q ss_pred ---CeEEEEeCCEE
Q 017091 339 ---DRIVVIDDGRI 349 (377)
Q Consensus 339 ---d~v~~l~~G~i 349 (377)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.78 E-value=9.7e-19 Score=188.34 Aligned_cols=106 Identities=31% Similarity=0.477 Sum_probs=92.0
Q ss_pred HHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 017091 253 FILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329 (377)
Q Consensus 253 ~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it 329 (377)
+++.+..++.+ .....+|||||+|||+|||||..+| +++||||||++||+.....+.+.|+++++ .|.|||+|+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~---~G~TVIvVe 548 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD---LGNTLIVVE 548 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEe
Confidence 45555544332 3334689999999999999999997 99999999999999999999999999964 489999999
Q ss_pred cCchhHHhcCeEEEE------eCCEEEEEcChHHHhhc
Q 017091 330 HRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 361 (377)
Q Consensus 330 H~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 361 (377)
||++.+..||+|++| ++|+|+..|+++++...
T Consensus 549 H~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 549 HDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 999998889999999 99999999999998654
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=1.7e-18 Score=186.20 Aligned_cols=105 Identities=30% Similarity=0.464 Sum_probs=90.6
Q ss_pred HHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 254 ILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 254 ~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
+..+..++.+ .....+|||||+|||.|||||+.+| +++||||||+|||+.....+.+.|+++++ .|.|||+|+|
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~---~G~TVIvVeH 547 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD---LGNTVIVVEH 547 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEC
Confidence 4444444332 2234689999999999999999986 89999999999999999999999999964 4899999999
Q ss_pred CchhHHhcCeEEEE------eCCEEEEEcChHHHhhc
Q 017091 331 RLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 361 (377)
Q Consensus 331 ~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 361 (377)
|++.+..||+|++| ++|+|+..|+++++...
T Consensus 548 d~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 548 DEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 99999889999999 99999999999998643
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.2e-19 Score=174.81 Aligned_cols=203 Identities=19% Similarity=0.352 Sum_probs=133.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh--CCCCCCCeEEECCEeCCCCCHHH---
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRW--- 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~--- 205 (377)
.|.++|.+.+-.++ ..+.|.|+.|-.|..+++|||||-||||||+.|+. +--|..=.+++..+.+..-+...
T Consensus 264 DIKiEnF~ISA~Gk---~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQGK---LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecccc---eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 48899988887543 58999999999999999999999999999999984 33344445666666553221110
Q ss_pred -H---hcceEEEccCCcC---c---cccHHHHHh--------cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC
Q 017091 206 -L---REKIGFVGQEPQL---L---QMDIKSNIM--------YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 267 (377)
Q Consensus 206 -~---r~~i~~v~Q~~~l---~---~~tv~eni~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (377)
+ .++..++-.+..| | ..|+.|-+. .|. .....+.++.+.-.++..-+...| .
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA--~sAEarARRILAGLGFskEMQ~rP--------t 410 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGA--DSAEARARRILAGLGFSKEMQERP--------T 410 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc--ccchhHHHHHHhhcCCChhHhcCC--------c
Confidence 0 1112222221111 0 112322221 110 000111111221122222222222 1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
..+|||-|-||+|||||..+|-+|.|||||+.||.....-+-+.|..+ .+|.++|+||-.++.. |..|+.|++
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------kKTLLIVSHDQgFLD~VCtdIIHLD~ 484 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIVSHDQGFLDSVCTDIIHLDN 484 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------hheeEEEecccchHHHHHHHHhhhhh
Confidence 469999999999999999999999999999999998877666677666 4699999999999986 999999998
Q ss_pred CEEEEE
Q 017091 347 GRIIEV 352 (377)
Q Consensus 347 G~i~~~ 352 (377)
-++...
T Consensus 485 qkLhyY 490 (807)
T KOG0066|consen 485 QKLHYY 490 (807)
T ss_pred hhhhhh
Confidence 887543
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.76 E-value=1.9e-18 Score=156.65 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=98.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE-EccCCcCccccHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIK 225 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~-v~Q~~~l~~~tv~ 225 (377)
..+.+|++|++++|++++|+||||+||||++|+++++. +..++|+ ||-.. ...++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 36999999999999999999999999999999998874 2223442 22211 134666
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
|+|...... .+.. ..+.+.+|+|++|+ ..+-+++.+|+++|+|||++|+|+...
T Consensus 73 d~I~~~~~~---~d~~----------------------~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSRLSN---DDSM----------------------ERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEecCC---cccc----------------------chhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 776432110 0000 00114589999975 555668899999999999999999765
Q ss_pred HHH-HHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 306 HYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 306 ~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
..+ ...++.+.+ .+.++|++||+.+.+..
T Consensus 127 ~~l~~~il~~l~~---~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 127 FAISLAILECLIK---KESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHh---cCCEEEEECChHHHHHH
Confidence 544 445666653 37899999999998765
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.74 E-value=2.1e-17 Score=159.18 Aligned_cols=182 Identities=23% Similarity=0.399 Sum_probs=132.6
Q ss_pred EEcCCCCCCCceeeeeEEEeCCc-----EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 139 FHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 139 ~~y~~~~~~~vL~~isl~i~~Ge-----~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
++|++. +.-+.+..|.|+.|+ ++..+|+||.||||++++++|.++|++|. ++..+ .|+|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 446653 357889999999985 58899999999999999999999999761 22222 37777
Q ss_pred ccCCcC-ccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 214 GQEPQL-LQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 214 ~Q~~~l-~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
||...- +.+||++-+.--.+ ......-+.+..+...++..+++-- .+|||||+|||++|.+|-..++++
T Consensus 408 pqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqev---------q~lSggelQRval~KOGGKpAdvY 478 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEV---------QGLSGGELQRVALALCLGKPADVY 478 (592)
T ss_pred ccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHh---------hcCCchhhHHHHHHHhcCCCCceE
Confidence 886543 56788776532111 0111222333444444444444322 469999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
+.|||.+-||.+.+..--..++++-- ..++|-.+|.||+-...+ +|||++.+.
T Consensus 479 liDEpsAylDSeQRi~AskvikRfil--hakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 479 LIDEPSAYLDSEQRIIASKVIKRFIL--HAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHH--hccchhhhhhhHHHHHHhhcceeEEEec
Confidence 99999999999988776666766532 246799999999998876 999999863
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.74 E-value=1e-17 Score=157.56 Aligned_cols=142 Identities=22% Similarity=0.312 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 239 (377)
..++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++...++++||+......+|.||. + +
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~----k- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P----K- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h----H-
Confidence 578999999999999999999999999999999999997654 45666678899996532244454431 0 0
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
..| ...++|+ .+|+++|+|||++ .+.+...++.+.
T Consensus 183 -------------------------------~~~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~--- 217 (270)
T TIGR02858 183 -------------------------------AEG---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH--- 217 (270)
T ss_pred -------------------------------HHH---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh---
Confidence 001 1233344 5999999999974 233445555542
Q ss_pred CCCeEEEEEecCchh--H------------HhcCeEEEEeCCEEEEEcChHHHh
Q 017091 320 KTKRTVIVIAHRLST--I------------KAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 320 ~~g~tvi~itH~l~~--~------------~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
.|.|+|++||+.+. + ..+||+++|++|+ ..|++++++
T Consensus 218 -~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 218 -AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred -CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 48899999997665 3 2279999999886 667776654
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.73 E-value=7.2e-18 Score=154.28 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=101.4
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 226 (377)
.+.+|++++.++ ++++|+|||||||||++|++++..-.. . .|..+ +.. +..++++.| +| ..++.|
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~v---p~~--~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFV---PAS--KAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCee---ccc--cceecceee---EeccCCchh
Confidence 588999999987 999999999999999999998754211 1 11111 111 245777765 33 455666
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCc---CCCCC
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSALD 301 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~illlDEP---ts~LD 301 (377)
|+..+. |.=...+..+++++ +.+|+++||||| |+++|
T Consensus 85 ~ls~g~--------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD 126 (216)
T cd03284 85 DLAGGR--------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYD 126 (216)
T ss_pred hhccCc--------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Confidence 655431 11111222333333 579999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHH
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l 358 (377)
.... ....++.+.+. .+.++|++||+.+....+|++..+++|++...++.+++
T Consensus 127 ~~~~--~~~il~~l~~~--~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 127 GLSI--AWAIVEYLHEK--IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHH--HHHHHHHHHhc--cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 8652 23344444321 36799999999876666888777788888776655554
No 418
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.72 E-value=3e-18 Score=159.54 Aligned_cols=195 Identities=18% Similarity=0.216 Sum_probs=121.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE--EECCEeCCCCCHHHHhcce---EEEccCCcCccccHHHHHh
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLTDLDIRWLREKI---GFVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I--~i~g~~i~~~~~~~~r~~i---~~v~Q~~~l~~~tv~eni~ 229 (377)
+.+.+||.++|+||+|+|||||++.+.+......+++ ++-...-...+..++.+.+ -++.+-. .+....+.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~----~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD----EPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC----CCHHHHHH
Confidence 5789999999999999999999999999887654433 2221111113344443333 1111100 01111110
Q ss_pred cCCCCCCCHHHHHHHHHHcC-----HHHHHHhCCCCcccccC--CCCCChHH--------HHHHHHHHHHcCCCCEEEEe
Q 017091 230 YGCPKDVKNEDIEWAAKQAY-----VHEFILSLPCGYETLVD--DDLLSGGQ--------KQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~--~~~LSgGq--------~QRv~iAral~~~p~illlD 294 (377)
.. ... .+...... ..+ +-+-+.+++..+++..+ +..+|||+ +||+++||++.++++|.+|
T Consensus 87 ~~--~~~-~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 87 VA--EMV-LEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HH--HHH-HHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 00 000 00000000 001 01223445555555554 35689999 9999999999999999999
Q ss_pred CcCCCCCHHHHHH-HHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 295 EATSALDSESEHY-VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 295 EPts~LD~~~~~~-i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
||+.+|+.++.. ++ +.+++. .+.|.|++||++.....+|.|.+|+.|++ +++++..++.|..++
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~---~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~ 226 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKG---TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMW 226 (249)
T ss_pred -eeheecCCCcccchH--HHHHhc---CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHH
Confidence 999999755543 43 444432 36799999999999999999999999997 566665555666554
No 419
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=7.1e-18 Score=136.01 Aligned_cols=77 Identities=22% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
..+|++++|++++|++++|+||||||||||++++. +|++.++|.++..++....++.++++||+ +|..|++|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36999999999999999999999999999999986 89999999999888777777778888888 89999999
Q ss_pred HHhcC
Q 017091 227 NIMYG 231 (377)
Q Consensus 227 ni~~~ 231 (377)
||.+.
T Consensus 74 Ni~~~ 78 (107)
T cd00820 74 NIFLI 78 (107)
T ss_pred hceee
Confidence 99873
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.67 E-value=1.8e-15 Score=148.86 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--
Q 017091 269 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-- 337 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-- 337 (377)
.+|.||+|+++||++++ .+|+|+|||||+++||+..+..+.+.+.++ +..++++||+.+.+..
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~------~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL------GAQVFITTTDLEDLADLL 346 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc------CCEEEEEcCChhhhhhhh
Confidence 49999999999999985 799999999999999999999998888754 3478999999877643
Q ss_pred -cCeEEEEeCCEE
Q 017091 338 -VDRIVVIDDGRI 349 (377)
Q Consensus 338 -~d~v~~l~~G~i 349 (377)
.++++.|++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 358999999987
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=1.8e-15 Score=138.22 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=92.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh--hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc--ccH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ--MDI 224 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~--gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~--~tv 224 (377)
|=+|+++.=..+.+++|+||||+|||||+|.+. +++ +..|...... ...++|..|...-+. .++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 445555532223799999999999999999998 434 5667654422 124777777542221 111
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
.+++ ..| .-+.||+++|++++.+|+++|+|||++|+|+..
T Consensus 86 ~~~~----------------------S~f------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 86 SSGQ----------------------SAF------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred hhcc----------------------chH------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 1111 001 345699999999999999999999999999975
Q ss_pred H-HHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 305 E-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 305 ~-~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
. ..+...++.+.+....+.++|++||+++.+..
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 4 44456777775421123589999999998765
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.63 E-value=3.5e-15 Score=158.93 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=99.4
Q ss_pred cEEEEEEEEEcCCCCCCCcee-----eeeEEEeCC-cEEEEEcCCCCcHHHHHHHHhhC-CCCCCCeEEECCEeCCCCCH
Q 017091 131 HVQFVNISFHYPSRPTVPILN-----HVCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~-----~isl~i~~G-e~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~ 203 (377)
.+.++++.. |+++ .+|+++.++ ++++|+||||+|||||+|+++|. +.+..|-
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------- 353 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------- 353 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-------------
Confidence 466766643 3443 378889887 99999999999999999999987 3333331
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+||..... ...+.+++... ..+++ .+.. + .+++|+|++|+..++++
T Consensus 354 --------~Vpa~~~~-~~~~~d~i~~~----i~~~~------------si~~---~------LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 354 --------PIPANEHS-EIPYFEEIFAD----IGDEQ------------SIEQ---N------LSTFSGHMKNISAILSK 399 (771)
T ss_pred --------CccCCccc-cccchhheeee----cChHh------------HHhh---h------hhHHHHHHHHHHHHHHh
Confidence 33333210 01112222110 01100 0000 0 14589999999999988
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 284 ILRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
+ .+|+++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.+...
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~---~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLK---QNAQVLITTHYKELKA 449 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEECChHHHHH
Confidence 7 89999999999999999999888 456777653 4789999999987643
No 423
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.61 E-value=2e-14 Score=143.75 Aligned_cols=180 Identities=21% Similarity=0.229 Sum_probs=118.5
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC---CC-----CCHHHHhcceEEEccCCc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TD-----LDIRWLREKIGFVGQEPQ 218 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i---~~-----~~~~~~r~~i~~v~Q~~~ 218 (377)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++- .+ ++...+++.|.++.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4689999 99999999999999999999999999999999999999965443 32 233446677888875321
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh-HHHHH-HHHHHHHcCCCCEEEEeCc
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG-GQKQR-IAIARAILRDPAILLLDEA 296 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg-Gq~QR-v~iAral~~~p~illlDEP 296 (377)
-. -.+...+....-+.++... .|.+..+--.+|+- -|-|| +++ .+.+|+ .
T Consensus 225 ~~-----------------~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rEisl---~~ge~P------~ 276 (438)
T PRK07721 225 PA-----------------LMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQREIGL---AVGEPP------T 276 (438)
T ss_pred CH-----------------HHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHHHHH---hcCCCC------c
Confidence 10 0001111111111222221 12222221122221 11111 111 123454 5
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCe-----EEEEEecCchhHHhcCeEEEEeCCEEEEEcChHH
Q 017091 297 TSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 297 ts~LD~~~~~~i~~~l~~l~~~~~~g~-----tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~ 357 (377)
|+|+||.....+.+.++++.+. ..|. ||++.+||++. ..||++..+.+|+|+.+++..+
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 7999999999999999988532 2575 99999999995 5599999999999999987654
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.60 E-value=1.6e-15 Score=138.88 Aligned_cols=72 Identities=26% Similarity=0.512 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHHHH----cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral----~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.||||||.+++||--| ..+++++|||||.++||+.....+.+.|+++. ++.-+|++||+...+..||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~----~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS----KQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT----TTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccc
Confidence 6999999999998655 46889999999999999999999999999884 346799999999999999987665
No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.60 E-value=8.5e-16 Score=137.31 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchhHHhcCe
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 340 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~-~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~ 340 (377)
+.+|+|++|...+++. +.+|+++|+|||++++|+.....+. ..++.+.+. .+.++|++||+++....+|+
T Consensus 60 s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~--~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEK--IGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEecHHHHHHHhhc
Confidence 4578888774433332 3499999999999999999776664 455666431 37899999999976665663
No 426
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=8.6e-15 Score=165.15 Aligned_cols=122 Identities=21% Similarity=0.249 Sum_probs=99.3
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHH------HHHHHHHHcCCCCEE
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQ------RIAIARAILRDPAIL 291 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~LSgGq~Q------Rv~iAral~~~p~il 291 (377)
.|.+|+.|||.+ .+ +.+++ ..+++.++..+|+..+|.| ++.++ ...||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 478999999999 33 44443 4677778899999999988 77665 3689999999 999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCchhHHh------cCeEEEEe
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTIKA------VDRIVVID 345 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~itH~l~~~~~------~d~v~~l~ 345 (377)
+|||||++||+.+...+.+.|..+.... ..|.|||+||||++++.. ||+.+-+.
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 9999999999999999999888764211 137899999999998753 46666554
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=6.4e-14 Score=128.49 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=90.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh-CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 225 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 225 (377)
.+.+|++|++.+|++++|+||||+||||+++++++ .+.+..|...+.. . ..++|..| +| .....
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~---i~~~~~~~ 84 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDS---VLTRMGAS 84 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccce---EEEEecCc
Confidence 58999999999999999999999999999999999 6778888765432 1 12444333 22 11122
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
|++.-+. ..| ..|-+|++-+-.-+.+|+++|+|||.+|.|+...
T Consensus 85 d~~~~~~------------------StF------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 85 DSIQHGM------------------STF------------------MVELSETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred ccccccc------------------chH------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 2221110 000 1122333322233568999999999888886655
Q ss_pred HHH-HHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 306 HYV-KGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 306 ~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
..+ ...++.+.+. .+.++|++||+.+...
T Consensus 129 ~~i~~~il~~l~~~--~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 129 IAIAYATLHYLLEE--KKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEcccHHHHH
Confidence 553 4556666532 3789999999998754
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.51 E-value=9.6e-15 Score=133.29 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcC-----CCCCHHHHHHHHHHHHHhh
Q 017091 273 GQKQRIAIARAILRDPAILLLDEAT-----SALDSESEHYVKGVLHALR 316 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPt-----s~LD~~~~~~i~~~l~~l~ 316 (377)
-|++++.|||+++.+|+++++|||| ++||+...+.+.+.+++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999999885
No 429
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.51 E-value=2.5e-14 Score=138.16 Aligned_cols=173 Identities=25% Similarity=0.319 Sum_probs=111.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----CCHHHH------------hc--ceEEEccCCc
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWL------------RE--KIGFVGQEPQ 218 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~~~------------r~--~i~~v~Q~~~ 218 (377)
-+||+..++||.||-||||-+++++|-.+|.-|.-. ++-+... ..-.++ +. +..||.|-|.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 357999999999999999999999999999877431 1111110 000000 00 0111111111
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 298 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts 298 (377)
...++|.+++.--.. .....++++...+...+++ ....||||+-||.+||.+-+++.++.++|||.|
T Consensus 176 ~~k~~v~~~l~~~~~----r~~~~~~~~~~~L~~~~~r---------e~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDE----RDNKEEVCDQLDLNNLLDR---------EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHHHhh----cccHHHHHHHHHHhhHHHh---------hhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 112333333321100 0011122222222222221 125699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
.||.+.+-+-...|+.+.. .++=||+|.||++.+.. .|-|.++..
T Consensus 243 YLDVKQRLkaA~~IRsl~~---p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLIN---PDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred cchHHHhhhHHHHHHHhhC---CCCeEEEEEeechHHHhhhcceeEEec
Confidence 9999998888888888753 46789999999999987 898888863
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.49 E-value=6.9e-14 Score=145.28 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCChHHHHHHHHHHHHcCC----CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~----p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.|||||+||++|||+++.. |+++||||||+|||+.+...+.+.|+++. .+.+||+|||++..+..||++++|
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~----~~~~vi~iTH~~~~~~~ad~~~~l 515 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS----ERHQVLCVTHLPQVAAHADAHFKV 515 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEEChHHHHHhcCeEEEE
Confidence 5899999999999999985 69999999999999999999999999984 368999999999988889999999
Q ss_pred eCCE
Q 017091 345 DDGR 348 (377)
Q Consensus 345 ~~G~ 348 (377)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9864
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.46 E-value=1.1e-13 Score=147.93 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=59.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEE
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 344 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l 344 (377)
+++|+|++|++.|++++ .+|+++|+|||++|+||.....+.. ++..+.+ .|.++|++||+.+.... +++..++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~---~~~~vIitTH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK---RGAKIIATTHYKELKALMYNREGVE 463 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH---CCCEEEEECChHHHHHHHhcCCCeE
Confidence 45899999999999999 8999999999999999998887754 5566643 47899999999888765 5554433
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.45 E-value=2.4e-13 Score=140.46 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=69.3
Q ss_pred CCChHHHHHHHHHHHHcC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~----~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.|||||+||++||++++. +|+++|||||++|||+.+...+.+.|+++. .+.+||+|||++..+..||+++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~----~~~qvi~iTH~~~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG----ESTQVMCVTHLPQVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEE
Confidence 389999999999999997 689999999999999999999999999984 357999999999988889999999
Q ss_pred eCCE
Q 017091 345 DDGR 348 (377)
Q Consensus 345 ~~G~ 348 (377)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 433
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.44 E-value=1.5e-13 Score=142.95 Aligned_cols=77 Identities=32% Similarity=0.495 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHHHc----------CCCCEEEEeCcC-CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 268 DLLSGGQKQRIAIARAIL----------RDPAILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~----------~~p~illlDEPt-s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
..||||||||++|||||+ .+|+++|||||| ++||+.+...+.+.|.++ .|.|||+|||+++...
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-----~~~~iiiish~~~~~~ 541 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-----KDTNVFVISHKDHDPQ 541 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-----CCCeEEEEECchhchh
Confidence 469999999999999987 599999999998 789999999999999887 2679999999988777
Q ss_pred hcCeEEEEeC-CEE
Q 017091 337 AVDRIVVIDD-GRI 349 (377)
Q Consensus 337 ~~d~v~~l~~-G~i 349 (377)
.||++++|++ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 543
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.44 E-value=7.6e-13 Score=136.71 Aligned_cols=111 Identities=34% Similarity=0.501 Sum_probs=97.5
Q ss_pred HHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCC--CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEE
Q 017091 252 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 328 (377)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~--p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~i 328 (377)
.|+.....+|.|.-+. .+|||||.||+.||.-+-.+ -=+++||||+.||-+..-+++++.|++++. .|.|+|+|
T Consensus 463 ~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD---lGNTviVV 539 (935)
T COG0178 463 GFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD---LGNTVIVV 539 (935)
T ss_pred HHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh---cCCeEEEE
Confidence 4566777888887664 68999999999999999765 468899999999999999999999999975 58999999
Q ss_pred ecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcCHHH
Q 017091 329 AHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 329 tH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~ 365 (377)
.||.+++..||+|+-| +.|+|++.|++++++++....
T Consensus 540 EHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~Sl 582 (935)
T COG0178 540 EHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESL 582 (935)
T ss_pred ecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcch
Confidence 9999999999999998 579999999999999886433
No 435
>PRK14079 recF recombination protein F; Provisional
Probab=99.43 E-value=4.8e-12 Score=123.95 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCe
Q 017091 270 LSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 340 (377)
Q Consensus 270 LSgGq~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~ 340 (377)
+|+||++++++|+.|+ .+|+++|||||+|.||+.....+.+.|... ..++|..| +.-..+|+
T Consensus 264 ~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~------~q~~it~t---~~~~~~~~ 334 (349)
T PRK14079 264 ASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL------PQAIVAGT---EAPPGAAL 334 (349)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC------CcEEEEcC---CCCCCCce
Confidence 8999999999999998 899999999999999999999998887543 12333333 23334899
Q ss_pred EEEEeCCEEEEE
Q 017091 341 IVVIDDGRIIEV 352 (377)
Q Consensus 341 v~~l~~G~i~~~ 352 (377)
++.+++|++...
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999987543
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.40 E-value=3.5e-12 Score=117.84 Aligned_cols=157 Identities=13% Similarity=0.239 Sum_probs=92.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHH-HHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTL-l~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+.++++.+.+++ .+++|+++.|+|+|||||||| ++++.++.++....+++.... ++.++
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~---- 67 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEF---- 67 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHH----
Confidence 567777776653 278999999999999999999 699998876543333333211 11111
Q ss_pred EEEccCCcCccccHHHHH-hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHc---
Q 017091 211 GFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAIL--- 285 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~--- 285 (377)
.++. .++. + ++++... + .+ .... ...+|+++.++-.+++.+-
T Consensus 68 --------------~~~~~~~g~--~--------------~~~~~~~-~-~l-~~~~~~~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 68 --------------IKQMMSLGY--D--------------INKKLIS-G-KL-LYIPVYPLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred --------------HHHHHHhCC--c--------------hHHHhhc-C-cE-EEEEecccccChHHHHHHHHHHHHHHH
Confidence 1111 1110 0 0000000 0 00 0000 0125666655555444443
Q ss_pred -CCCCEEEEeCcCCCC----CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh--------HHh-cCeEEEEe
Q 017091 286 -RDPAILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------IKA-VDRIVVID 345 (377)
Q Consensus 286 -~~p~illlDEPts~L----D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~--------~~~-~d~v~~l~ 345 (377)
.+|+++++||||+++ |+...+.+.+.++.+++ .|.|++ +||+... +.. ||-|+.|+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~---~g~tvi-~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS---LNKVII-LTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh---CCCEEE-EEecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 77777888888888854 366555 5666543 233 68888776
No 437
>PRK13695 putative NTPase; Provisional
Probab=99.39 E-value=5.2e-13 Score=117.99 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeC--cCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDE--ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDE--Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
.+||+++-++.+++..+.+|+++++|| |+..+|+.. .+.+.++.+ .+.++|+++|+-.....+|+|..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCC
Confidence 489999999999999999999999999 555556544 444444432 37899999999544456999999999
Q ss_pred CEEEEE
Q 017091 347 GRIIEV 352 (377)
Q Consensus 347 G~i~~~ 352 (377)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999876
No 438
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=1.4e-12 Score=144.47 Aligned_cols=77 Identities=26% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCCChHHHHHHHHHHHHcC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 268 DLLSGGQKQRIAIARAILR----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~----------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
..|||||++||+||+||+. +|++||+||||++||+.+...+++.|..+.. .|++|++|||+++....
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~---~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE---GSKMIGIISHVPEFRER 1025 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHh
Confidence 5799999999999999986 7999999999999999999999999999864 48899999999999876
Q ss_pred -cCeEEEEeCC
Q 017091 338 -VDRIVVIDDG 347 (377)
Q Consensus 338 -~d~v~~l~~G 347 (377)
+|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 8999999754
No 439
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.34 E-value=2.8e-12 Score=123.61 Aligned_cols=145 Identities=16% Similarity=0.215 Sum_probs=99.4
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 232 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 232 (377)
+++.+++|+.++|+||+|||||||+++|+++++|..|.+.+.+ ..++.... +..+.++.+... + +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~~-------~----~- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKGG-------Q----G- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCCC-------C----C-
Confidence 5577889999999999999999999999999999999888853 22222111 122222221100 0 0
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHH
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l 312 (377)
. ...| ..-.++.+|-.+|+++++|||.+ .++.+.+
T Consensus 202 ~----------------------------------~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 202 L----------------------------------AKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred c----------------------------------CccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 0 0011 11134567788999999999996 2345666
Q ss_pred HHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 313 HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 313 ~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+.+.. .+.+++.++|..+.....||+..|..|++...|.+.+.+.
T Consensus 237 ~a~~~---g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 237 RAVNT---GHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHhc---CCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 66542 2346799999999766799999999999998888887763
No 440
>PRK03918 chromosome segregation protein; Provisional
Probab=99.32 E-value=3.8e-12 Score=139.10 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=66.6
Q ss_pred CCCChHHHH------HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 268 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 268 ~~LSgGq~Q------Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
..|||||+| |++|||+++.+|+++|+||||++||+.....+.+.|..+.. .+.+||+|||+++....||++
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~---~~~~iiiith~~~~~~~~d~~ 863 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR---KIPQVIIVSHDEELKDAADYV 863 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHhCCeE
Confidence 469999999 56666788999999999999999999999999999988753 357999999999877779999
Q ss_pred EEEeC
Q 017091 342 VVIDD 346 (377)
Q Consensus 342 ~~l~~ 346 (377)
++|+.
T Consensus 864 ~~l~~ 868 (880)
T PRK03918 864 IRVSL 868 (880)
T ss_pred EEEEe
Confidence 99983
No 441
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=8.4e-12 Score=114.19 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=88.4
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 225 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 225 (377)
.+-+|++|+.++|++++|+||||+||||+++.+.+..-.. .|- .+ +.+ ...++++. .+| .....
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~--~~~i~~~~---~i~~~~~~~ 83 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAK--SMRLSLVD---RIFTRIGAR 83 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Ccc--ccEecccc---EEEEecCcc
Confidence 6899999999999999999999999999999998764221 121 11 000 11122221 122 22333
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
|++..+.. + + ..|.+++.-.-..+.+|+++|+|||++|+|+...
T Consensus 84 d~~~~~~S---t--------------------------------F-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 84 DDIMKGES---T--------------------------------F-MVELSETANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred cccccCcc---h--------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 44332210 0 0 0122333222333468999999999999999988
Q ss_pred HHHHHH-HHHhhccCCCCeEEEEEecCchhHHh
Q 017091 306 HYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 306 ~~i~~~-l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
..+... ++.+.+. .+.++|++||+++.+..
T Consensus 128 ~~la~ail~~L~~~--~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 128 YAIAHAVLEYLVKK--VKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHh--cCCcEEEEeccHHHHHH
Confidence 888777 5666531 37899999999998754
No 442
>PRK01156 chromosome segregation protein; Provisional
Probab=99.31 E-value=6.7e-12 Score=137.39 Aligned_cols=78 Identities=28% Similarity=0.441 Sum_probs=66.9
Q ss_pred CCCCChHHHHHHHH------HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchhHHhcC
Q 017091 267 DDLLSGGQKQRIAI------ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 267 ~~~LSgGq~QRv~i------Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~itH~l~~~~~~d 339 (377)
...|||||++|++| ||+++.+|++++|||||++||+.....+.+++...... ..+ .|+|+||||++.+..||
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~-~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKD-SSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEECchHHHHhcC
Confidence 35799999999975 59999999999999999999999999999988754322 123 48999999999888899
Q ss_pred eEEEEe
Q 017091 340 RIVVID 345 (377)
Q Consensus 340 ~v~~l~ 345 (377)
+++.+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 443
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.28 E-value=1.9e-12 Score=128.70 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=56.2
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCC
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEP 217 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 217 (377)
.+|++|||++++||+++|+|||||||||||+ +|+.+|++| +|.++|.++...+..++.. .-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 5899999999999999999999999999999 788889888 7999999998765443221 11888864
No 444
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.27 E-value=4.2e-12 Score=116.27 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHHcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 269 LLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p---~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.+|.|++|.+.++.++...+ .++++|||-++|+|..++.+.+.|.+..+ .+.-+|++||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~---~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK---KNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG---GSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc---cCCEEEEeCccchhc
Confidence 47999999999998888766 89999999999999999999999988753 267899999998765
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.27 E-value=3.9e-11 Score=106.61 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=61.0
Q ss_pred CCCChHHHH------HHHHHHHHcCCCCEEEEeCcCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchh----
Q 017091 268 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST---- 334 (377)
Q Consensus 268 ~~LSgGq~Q------Rv~iAral~~~p~illlDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~---- 334 (377)
..+|+|++| +...+.+...+|+++++|||++.+| +.....+.+.++.+++ .|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~---~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR---FGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH---CCCEEEEEeccccCCCcc
Confidence 468999998 5555555667999999999999999 7777888888888764 48899999998764
Q ss_pred -----HHh-cCeEEEEe
Q 017091 335 -----IKA-VDRIVVID 345 (377)
Q Consensus 335 -----~~~-~d~v~~l~ 345 (377)
+.. ||.|+.|+
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 454 89999997
No 446
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.23 E-value=1.4e-10 Score=101.42 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
..|.||-=---+.+.+- +.-++|||||-|+|.|.-+-.++..|+++.+ .|.-+||+||.+=.+.. --+|+-++.+
T Consensus 129 ~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~---sGaQ~IiATHSPiLlAiP~A~I~~~~~~ 204 (233)
T COG3910 129 HMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLAD---SGAQIIIATHSPILLAIPGAEIYEISES 204 (233)
T ss_pred hhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHh---cCCeEEEEecChhheeCCCcEEEEEecC
Confidence 47999977666667654 5689999999999999999999999999865 47889999999888765 6789988877
Q ss_pred EEE
Q 017091 348 RII 350 (377)
Q Consensus 348 ~i~ 350 (377)
-+.
T Consensus 205 g~~ 207 (233)
T COG3910 205 GIE 207 (233)
T ss_pred Ccc
Confidence 643
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.22 E-value=4.4e-11 Score=119.03 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=116.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++-++++..|..+ ..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+.-
T Consensus 130 ~~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 36777788778643 4688885 99999999999999999999999999999999988887766542
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-----
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----- 285 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~----- 285 (377)
.++.|.+..- +...++..- --.....+-|.|+|+|++.+.+.+
T Consensus 195 -----------~ev~e~~~~~-------------l~~~gl~~t--------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 195 -----------REVKDFIRKE-------------LGEEGMRKS--------VVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred -----------ccHHHHHHHH-------------hhhccccee--------EEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1223322210 000000000 000112457999999999999988
Q ss_pred --CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 286 --RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 286 --~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
.++-++++|+||...|+. +++-..+.+.- ..|.+..+.||-...++++.+ .++|.|....+
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p---~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELP---IGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCC---CCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 789999999999999996 44444555442 247888888885445555544 36888865543
No 448
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.21 E-value=3.9e-11 Score=132.73 Aligned_cols=77 Identities=30% Similarity=0.292 Sum_probs=67.8
Q ss_pred CCCCChHHHHHHHHHHHHcC--------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-
Q 017091 267 DDLLSGGQKQRIAIARAILR--------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA- 337 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~~--------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~- 337 (377)
...|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+++ .|+||++|||.......
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~---~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA---SGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEecHHHHHHhc
Confidence 46799999999999999996 8999999999999999999999999999964 48999999997777766
Q ss_pred cCeEEEEeC
Q 017091 338 VDRIVVIDD 346 (377)
Q Consensus 338 ~d~v~~l~~ 346 (377)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 567776654
No 449
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.21 E-value=2e-11 Score=136.78 Aligned_cols=74 Identities=27% Similarity=0.446 Sum_probs=65.8
Q ss_pred CCCChHHHHHHHHHHHH----cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 268 DLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral----~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
..|||||+||++||+++ +.+|+++||||||++||+.+...+.++|..+.+ +.++|+|||+++.+..||+++.
T Consensus 1088 ~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~----~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK----NTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred cccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc----CCEEEEEEcChhHHHHhhhHee
Confidence 46999999999999998 477899999999999999999999999998842 4689999999998878999876
Q ss_pred Ee
Q 017091 344 ID 345 (377)
Q Consensus 344 l~ 345 (377)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 54
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.21 E-value=9.7e-11 Score=126.48 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=59.5
Q ss_pred HcCCCCEEEEeCcCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH----------hcCeEEEEeCCEEEEE
Q 017091 284 ILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK----------AVDRIVVIDDGRIIEV 352 (377)
Q Consensus 284 l~~~p~illlDEPts~L-D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~----------~~d~v~~l~~G~i~~~ 352 (377)
+..+|+++++|||+.+| |+...+.+.+.++.+++ .|.+++++||+++.+. .|+++++|.+|++...
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK---~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~ 725 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK---ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREP 725 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccccc
Confidence 36799999999999999 69999999999998864 4789999999998763 5999999999998766
Q ss_pred cCh
Q 017091 353 GNH 355 (377)
Q Consensus 353 g~~ 355 (377)
+..
T Consensus 726 ~~~ 728 (818)
T PRK13830 726 GTR 728 (818)
T ss_pred chH
Confidence 643
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.19 E-value=1.5e-10 Score=99.65 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=77.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|.||||+||||+++.+++...+..|.+.+.+.+... ...+ ++.... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~-~-------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGE-S-------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhh-h--------
Confidence 368999999999999999999887766666554432211 0000 000000 0
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC----------CCHHHHHHHHH
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSA----------LDSESEHYVKG 310 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~p~illlDEPts~----------LD~~~~~~i~~ 310 (377)
.... ......... ....+.++.++++.+++...+|+++++|||++- .|....+.+.+
T Consensus 51 -----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 51 -----LKGA-------LDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred -----hccc-------cccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0000 000000000 122456666788899999999999999999954 44454555555
Q ss_pred HHHHhhccCCCCeEEEEEecCchhH
Q 017091 311 VLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 311 ~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
++...++ .+.|+|+++|.....
T Consensus 119 l~~~~~~---~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARK---GGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhc---CCceEEEEEecCCcc
Confidence 5555432 488999999977543
No 452
>PRK02224 chromosome segregation protein; Provisional
Probab=99.10 E-value=2e-10 Score=125.72 Aligned_cols=77 Identities=30% Similarity=0.491 Sum_probs=67.0
Q ss_pred CCCChHHHH------HHHHHHHHcCC-----C-CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchh
Q 017091 268 DLLSGGQKQ------RIAIARAILRD-----P-AILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLST 334 (377)
Q Consensus 268 ~~LSgGq~Q------Rv~iAral~~~-----p-~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~itH~l~~ 334 (377)
..||||||| |+++|++++.+ | +++|+||||++||+.....+.+.|..+.. .| .+||+||||++.
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~---~~~~qviiish~~~~ 856 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR---LGVEQIVVVSHDDEL 856 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh---cCCCeEEEEECChHH
Confidence 479999999 99999999864 3 67999999999999999999999998853 24 479999999999
Q ss_pred HHhcCeEEEEeCC
Q 017091 335 IKAVDRIVVIDDG 347 (377)
Q Consensus 335 ~~~~d~v~~l~~G 347 (377)
+..||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 9889999999743
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.09 E-value=5.2e-10 Score=103.55 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHHcC--CCCEEEEeCcCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-------HH
Q 017091 269 LLSGGQKQRIAIARAILR--DPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-------IK 336 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~--~p~illlDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-------~~ 336 (377)
..|.++.+.+..++.++. +|+++++||||+.+| ......+.+.++.+++ .|.|+++++|+... +.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~---~g~tvllt~~~~~~~~~~~~~~~ 176 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD---LGKTILITLHPYAFSEELLSRIR 176 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCcCCHHHHHHHH
Confidence 357788999999999997 999999999996544 4444444444554443 47899999997654 33
Q ss_pred h-cCeEEEEe
Q 017091 337 A-VDRIVVID 345 (377)
Q Consensus 337 ~-~d~v~~l~ 345 (377)
. +|-++.|+
T Consensus 177 ~l~DgvI~L~ 186 (234)
T PRK06067 177 SICDVYLKLR 186 (234)
T ss_pred hheEEEEEEE
Confidence 3 67777776
No 454
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.09 E-value=1.8e-10 Score=129.31 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHHHHHcC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 268 DLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~----~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
..||||||++++||++|+. +||++|||||+++||+.+...+.+.|.++. .+.++|+|||+...+..||+++.
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~----~~~~~i~~t~~~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA----GEAQFIVVSLRSPMIEYADRAIG 1148 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc----CCCeEEEEECcHHHHHhcceeEe
Confidence 3699999999999999984 789999999999999999999999998874 34689999999988888999987
Q ss_pred EeC
Q 017091 344 IDD 346 (377)
Q Consensus 344 l~~ 346 (377)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 753
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.08 E-value=3.8e-10 Score=101.92 Aligned_cols=118 Identities=27% Similarity=0.385 Sum_probs=73.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
++.|+||+||||||+++.|++.+++. .|.|.....++. +.. ....+++.|.. .+. +
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~~------------vg~--~----- 59 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQRE------------VGL--D----- 59 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeecc------------cCC--C-----
Confidence 68999999999999999999888644 567665444331 100 00111222210 000 0
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCC
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~ 320 (377)
+ ..++. +++++|..+|+++++|||. |+++...+ ++.. .
T Consensus 60 -----------------~---------~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a----~ 97 (198)
T cd01131 60 -----------------T---------LSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA---LTAA----E 97 (198)
T ss_pred -----------------c---------cCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHH----H
Confidence 0 00111 4779999999999999996 66543333 3322 2
Q ss_pred CCeEEEEEecCchhHHhcCeEEEE
Q 017091 321 TKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 321 ~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.|..++.++|..+.....||++.|
T Consensus 98 ~G~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 98 TGHLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred cCCEEEEEecCCcHHHHHhHHHhh
Confidence 478899999998876656776655
No 456
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.00 E-value=7e-10 Score=110.69 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=70.0
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC---CEeCCCCCHHH-
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID---GFPLTDLDIRW- 205 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~---g~~i~~~~~~~- 205 (377)
..++.++++..|..+ ..+++.++ +|.+||+++|+||||||||||+++|+++.+|+.|.|.+. |.++..+....
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 358999999999753 46899996 999999999999999999999999999999999999885 45555443222
Q ss_pred ---HhcceEEEccCC
Q 017091 206 ---LREKIGFVGQEP 217 (377)
Q Consensus 206 ---~r~~i~~v~Q~~ 217 (377)
+++.|++++|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 345799999965
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=3.7e-08 Score=81.55 Aligned_cols=119 Identities=35% Similarity=0.444 Sum_probs=78.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 237 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 237 (377)
++..+.|+||+||||||+++.|+..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 367899999999999999999999887554 3444444332211111000
Q ss_pred HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHH-----H
Q 017091 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-----L 312 (377)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~-----l 312 (377)
...... ......+++..+..+++|-..+|+++++||+..-.+.......... .
T Consensus 51 -------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 -------------LIIVGG---------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred -------------hhhhhc---------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 000000 0023678888888888988888999999999999999877655431 1
Q ss_pred HHhhccCCCCeEEEEEecC
Q 017091 313 HALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 313 ~~l~~~~~~g~tvi~itH~ 331 (377)
..... ..+..+|+++|.
T Consensus 109 ~~~~~--~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKS--EKNLTVILTTND 125 (148)
T ss_pred HHHHh--cCCCEEEEEeCC
Confidence 11111 246788888884
No 458
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.93 E-value=1.4e-10 Score=118.42 Aligned_cols=157 Identities=11% Similarity=0.148 Sum_probs=98.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH--hhCCCCCCCeEEECCEeCCCCCHHHHh---cceEEEccCCcCccccHHHHHhc
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQIYIDGFPLTDLDIRWLR---EKIGFVGQEPQLLQMDIKSNIMY 230 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l--~gl~~p~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~l~~~tv~eni~~ 230 (377)
-+++|..+.|.||+|||||||..-+ .|..++.+.-+++.... ++.+++ +.+||-.++..- . +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~-~----g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVD-E----GKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhh-c----CceEE
Confidence 4889999999999999999999866 46665555666665532 233333 346665553310 0 01111
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH--HHHcCCCCEEEEeCcCCCCCHHHHHHH
Q 017091 231 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSESEHYV 308 (377)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA--ral~~~p~illlDEPts~LD~~~~~~i 308 (377)
-... .........+..++.++++.++ ..+|+|++|||.|+ .++...|+.. ...++.+
T Consensus 88 ~~~~--~~~~~~~~~~~~~l~~~l~~i~---------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDAS--PDPEGQDVVGGFDLSALIERIN---------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred EecC--chhccccccccCCHHHHHHHHH---------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 0000 0000011223344555555544 45899999999999 6666665543 4667778
Q ss_pred HHHHHHhhccCCCCeEEEEEecCchh--------H-Hh-cCeEEEEe
Q 017091 309 KGVLHALRNDCKTKRTVIVIAHRLST--------I-KA-VDRIVVID 345 (377)
Q Consensus 309 ~~~l~~l~~~~~~g~tvi~itH~l~~--------~-~~-~d~v~~l~ 345 (377)
.++++.+++ .|+|+|+++|+.+. + .. ||.|+.|+
T Consensus 147 ~~Li~~L~~---~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQ---IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHH---CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 888888764 48999999998764 2 44 89999887
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.90 E-value=4.3e-09 Score=103.31 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCcee-----------eeeEEEeCCcEEEEE
Q 017091 98 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIV 166 (377)
Q Consensus 98 ~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~-----------~isl~i~~Ge~~~iv 166 (377)
++..+.+|++++++.++.+..+ +....+.++|+||++.||+. +.+|+ |+++.|.+|+.++|+
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~~-----~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGDD-----PEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred eccccHhHHHHHhCCCccCCCC-----ccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 3456789999999987663221 11123469999999999864 36897 999999999999999
Q ss_pred cCCCCcHHHHHHHHhhCCCC
Q 017091 167 GLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 167 G~nGsGKSTLl~~l~gl~~p 186 (377)
||+|||||||++.|...+..
T Consensus 175 G~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCCCChhHHHHHHHHhhcc
Confidence 99999999999999998753
No 460
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.89 E-value=5.6e-09 Score=94.41 Aligned_cols=65 Identities=26% Similarity=0.347 Sum_probs=50.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHH
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 225 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 225 (377)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++...+...+++. +.++..++..++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999985 77888 58888766666665553 2355555566776
Q ss_pred HH
Q 017091 226 SN 227 (377)
Q Consensus 226 en 227 (377)
+|
T Consensus 78 ~~ 79 (205)
T PRK00300 78 GN 79 (205)
T ss_pred Cc
Confidence 66
No 461
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.86 E-value=1.9e-09 Score=107.41 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=62.8
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe---EEECCEeCCCCCHHH------HhcceEEEccCC
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ---IYIDGFPLTDLDIRW------LREKIGFVGQEP 217 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~---I~i~g~~i~~~~~~~------~r~~i~~v~Q~~ 217 (377)
..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+. |-.+|.++..+.... .|..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4699999 999999999999999999999999999999988643 333444443322221 244699999998
Q ss_pred cCc-cccHHHHHh
Q 017091 218 QLL-QMDIKSNIM 229 (377)
Q Consensus 218 ~l~-~~tv~eni~ 229 (377)
..+ ..++.++..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 776 667777764
No 462
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=4.5e-09 Score=103.56 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHHHHcC---------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 269 LLSGGQKQRIAIARAILR---------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~---------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
.+|.||+++++||.+|+. +|+|||||||+|+||+..+..+.+.|... |.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~------~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL------GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc------CCEEEEEecChhhcc
Confidence 399999999999999999 99999999999999999999999888643 568999999987653
No 463
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.82 E-value=3.4e-09 Score=98.45 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=38.3
Q ss_pred HcCCCCEEEEeCcCCC------CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 017091 284 ILRDPAILLLDEATSA------LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332 (377)
Q Consensus 284 l~~~p~illlDEPts~------LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l 332 (377)
...+|+++|+| |+++ +|+.....+++.|.++.++ .|.|||+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~--~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ--TGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH--hCCEEEEEeccC
Confidence 35799999999 7764 6998888899988888653 489999999976
No 464
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.82 E-value=8.4e-09 Score=104.23 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=49.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
++++.++.+++|.+++++||||+||||++..|++.+.+..|. .+|+++.+|+ |..++.|++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHH
Confidence 344555567789999999999999999999999988766653 2578899887 566778887
Q ss_pred hc
Q 017091 229 MY 230 (377)
Q Consensus 229 ~~ 230 (377)
.+
T Consensus 306 r~ 307 (484)
T PRK06995 306 RI 307 (484)
T ss_pred HH
Confidence 54
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.78 E-value=5.6e-09 Score=93.31 Aligned_cols=79 Identities=23% Similarity=0.279 Sum_probs=58.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc--Cc-cccHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--LL-QMDIK 225 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~tv~ 225 (377)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-...+ .+..+++++|... .+ ..+..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455566789999999999999999999999999999999999999774322221 2345677766543 22 35677
Q ss_pred HHHhc
Q 017091 226 SNIMY 230 (377)
Q Consensus 226 eni~~ 230 (377)
+.+..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 76643
No 466
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.78 E-value=7.6e-09 Score=109.13 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 017091 45 TLYRSTQVMAVLLGGMSIMIGQVSPE---QLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 121 (377)
Q Consensus 45 ~~~~~~~~~~~~~g~~~v~~g~lt~g---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~ 121 (377)
.+..+...+++|+|+|+++.|.++.| .+++|..+...+..| ..+...+.++.....+.+|+.++.+...+..
T Consensus 101 ~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~---- 175 (644)
T PRK10733 101 SIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS---- 175 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH----
Confidence 33444567788899999999999998 777777666666666 4556666677666677777777666432110
Q ss_pred ccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 122 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 122 ~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.. + .+...+++| +.|+||+|+||||+.+.+++..
T Consensus 176 --~~---------~----------------~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 176 --RF---------Q----------------KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred --HH---------H----------------hcCCCCCCc--EEEECCCCCCHHHHHHHHHHHc
Confidence 00 0 011134455 8999999999999999998855
No 467
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.76 E-value=8.8e-08 Score=96.25 Aligned_cols=177 Identities=21% Similarity=0.217 Sum_probs=108.0
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HH-----HhcceEEEccCCc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RW-----LREKIGFVGQEPQ 218 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~-----~r~~i~~v~Q~~~ 218 (377)
..+++++ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.+...|..-.+... .. +++.+-++.+..
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d- 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD- 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC-
Confidence 4699999 9999999999999999999999999999999999887776654433211 00 111122222111
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh-HHHHHHHHHHHHcCCCCEEEEeCc-
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG-GQKQRIAIARAILRDPAILLLDEA- 296 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg-Gq~QRv~iAral~~~p~illlDEP- 296 (377)
...-++...+.-..-+.++... .|.+-.+--.+|+- -|-+| .++ +.+.||
T Consensus 229 ----------------~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~A~A~R-Eis---------l~~ge~P 280 (440)
T TIGR01026 229 ----------------QSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRFAMAQR-EIG---------LAAGEPP 280 (440)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHHHHHHH-HHH---------HhcCCCC
Confidence 0011122211111222333332 24433332233432 22222 222 123443
Q ss_pred -CCCCCHHHHHHHHHHHHHhhccCCCCe-------EEEEEecCchhHHhcCeEEEEeCCEEEEEcChHH
Q 017091 297 -TSALDSESEHYVKGVLHALRNDCKTKR-------TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 297 -ts~LD~~~~~~i~~~l~~l~~~~~~g~-------tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~ 357 (377)
+.|+||.....+.+++.+... .+. ||++-+||+.. .-+|++..+.+|+|+.+...++
T Consensus 281 ~~~Gypp~~~~~l~~l~ERag~---~~~GSIT~i~tVl~~~~d~~d-pi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 281 ATKGYTPSVFSTLPRLLERAGA---SGKGSITAFYTVLVEGDDMNE-PIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred cccccChhHHHHHHHHHHHhcc---CCCCeeeEEEEEEccCcCCCc-chhhhhccccceEEEEecchhh
Confidence 569999999999999888753 345 78889999832 2379999999999998876554
No 468
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.74 E-value=3.6e-07 Score=99.47 Aligned_cols=54 Identities=30% Similarity=0.411 Sum_probs=48.3
Q ss_pred HHHHHcCCCCEEEEeCcCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 280 IARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 280 iAral~~~p~illlDEPts~L-D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
|+|++..+|+++++|||+.+| |+..++.+.+.++.+++ .|.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK---~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK---ANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHh
Confidence 678899999999999999999 79999999999998864 4779999999998774
No 469
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.71 E-value=3e-07 Score=99.86 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=81.5
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC-CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
.|=+|+++. +.+.++.|+|||++||||++|.++-.. -..-| .|||-+.. ..++.|
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G---------------------~~VPa~~a--~i~~~d 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG---------------------SFVPAESA--RIGIVD 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC---------------------Cceeccce--EecccC
Confidence 466788887 667899999999999999999986431 11112 12222110 111111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC--CCCEEEEeCc---CCCCC
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--DPAILLLDEA---TSALD 301 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~--~p~illlDEP---ts~LD 301 (377)
.|... .|..+ .+. ..+|--+.....++++|-. ++.++|+||| |+.+|
T Consensus 652 ~I~tr----------------iga~d---~i~---------~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d 703 (854)
T PRK05399 652 RIFTR----------------IGASD---DLA---------SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD 703 (854)
T ss_pred eeeec----------------cCccc---ccc---------cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch
Confidence 11100 00000 000 2256666666677776654 8999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcC
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d 339 (377)
..+ .....++.+.+. .+.++|++||..+....++
T Consensus 704 g~a--ia~aile~l~~~--~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 704 GLS--IAWAVAEYLHDK--IGAKTLFATHYHELTELEE 737 (854)
T ss_pred hHH--HHHHHHHHHHhc--CCceEEEEechHHHHHHhh
Confidence 544 345556666532 3578999999966544444
No 470
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.70 E-value=4.8e-08 Score=107.21 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=67.7
Q ss_pred CCCCChHHHHHHHHHHHHc------CC--CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhc
Q 017091 267 DDLLSGGQKQRIAIARAIL------RD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 338 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~------~~--p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~ 338 (377)
...|||||+=.++||-+|+ .+ -+.++|||||..||+.+...+.++|..+.. .+.+|++|||+.++...+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~---~~~qiiIISH~eel~e~~ 889 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS---DGRQIIIISHVEELKERA 889 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHhC
Confidence 3679999999877776664 45 699999999999999999999999999974 378999999999999899
Q ss_pred CeEEEEeCC
Q 017091 339 DRIVVIDDG 347 (377)
Q Consensus 339 d~v~~l~~G 347 (377)
|.++.++..
T Consensus 890 ~~~i~V~k~ 898 (908)
T COG0419 890 DVRIRVKKD 898 (908)
T ss_pred CeEEEEEec
Confidence 999888743
No 471
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.67 E-value=2e-08 Score=90.45 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~ 303 (377)
.+.|.|++++..+ .+.+|+++|+|+|++..++.
T Consensus 82 ~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 82 YDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 4578888776554 57889999999999999863
No 472
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.67 E-value=2.5e-07 Score=91.17 Aligned_cols=173 Identities=25% Similarity=0.365 Sum_probs=119.1
Q ss_pred EEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 017091 137 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 215 (377)
Q Consensus 137 v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 215 (377)
|++..|.+. .+.+ +-|++| ++.|+|.+=-||||||+.|. |.|+.--| ||.+. |--
T Consensus 227 ve~~LP~~g---~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~-----------VVT--- 282 (448)
T PF09818_consen 227 VEIELPNGG---TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREF-----------VVT--- 282 (448)
T ss_pred EEEECCCCC---EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceE-----------EEE---
Confidence 566666432 3444 468999 99999999999999999997 88876555 44331 110
Q ss_pred CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 017091 216 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 216 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~p~illlD 294 (377)
++.-. .|+ ..+ . .....+.+..|+..+|.|.+|.... .+=||-.-|=..|..||=..+++||+|
T Consensus 283 ~~~av--kir-------AED--G----R~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiD 347 (448)
T PF09818_consen 283 DPDAV--KIR-------AED--G----RSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLID 347 (448)
T ss_pred CCCce--EEE-------ecC--C----ceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEc
Confidence 11000 000 000 0 1123456788999999999987543 468999999999999999999999999
Q ss_pred CcCCCC-----CHHHHHHH----------HHHHHHhhccCCCCeEEEEEecCchhH-HhcCeEEEEeCCEEE
Q 017091 295 EATSAL-----DSESEHYV----------KGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRII 350 (377)
Q Consensus 295 EPts~L-----D~~~~~~i----------~~~l~~l~~~~~~g~tvi~itH~l~~~-~~~d~v~~l~~G~i~ 350 (377)
|=||+- |...+..+ .+.++++.++ .|.++|+|+=-.... ..||+|++|++-+-.
T Consensus 348 EDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~--~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 348 EDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEK--LGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred CcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHH--cCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 999985 44444444 3344555443 588888887766654 569999999987653
No 473
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.66 E-value=2.5e-08 Score=88.34 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh-cceEEEccCCcCc-cccHHHHHhc
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EKIGFVGQEPQLL-QMDIKSNIMY 230 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r-~~i~~v~Q~~~l~-~~tv~eni~~ 230 (377)
+||+++|+|+||||||||+++|++++.| +.++|.++... ...+ ...|+.+|+...+ ..++.+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999877 68899887532 2222 2356666664433 3455555543
No 474
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.66 E-value=1e-07 Score=93.29 Aligned_cols=120 Identities=26% Similarity=0.358 Sum_probs=72.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCC-CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 235 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 235 (377)
..++..+.|.||+||||||+++.+.+.++ +..|.|..-..++... ......++.|.. .+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~e------------vg---- 178 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQRE------------VG---- 178 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEccc------------cC----
Confidence 45789999999999999999999998765 4467776544332110 000111111100 00
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHh
Q 017091 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315 (377)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l 315 (377)
. ...+ ---++++||-++|+++++||+. |+.+....++. .
T Consensus 179 -------------------------~------~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a 217 (343)
T TIGR01420 179 -------------------------L------DTLS----FANALRAALREDPDVILIGEMR---DLETVELALTA---A 217 (343)
T ss_pred -------------------------C------CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---H
Confidence 0 0001 1123567888999999999997 88776544332 2
Q ss_pred hccCCCCeEEEEEecCchhHHhcCeE
Q 017091 316 RNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 316 ~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
..|.+++.+.|..+.....+|+
T Consensus 218 ----~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 218 ----ETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred ----HcCCcEEEEEcCCCHHHHHHHH
Confidence 2488999999986554333333
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.65 E-value=3.3e-08 Score=88.24 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=45.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 217 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 217 (377)
|++++|+||||||||||+++|++...| .+.+++..+........+..+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998876 5888888777654444566788888875
No 476
>PRK08149 ATP synthase SpaL; Validated
Probab=98.64 E-value=3.3e-08 Score=98.51 Aligned_cols=70 Identities=26% Similarity=0.316 Sum_probs=59.1
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC---CeEEECCEeCCCCCHHHH----hcceEEEccCC
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWL----REKIGFVGQEP 217 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~ 217 (377)
..+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|-.+|.++..+..+.+ ++++++|+...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 4699999 9999999999999999999999999999999987 889999988876543333 25678887644
No 477
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.64 E-value=4.7e-08 Score=110.81 Aligned_cols=60 Identities=28% Similarity=0.402 Sum_probs=53.4
Q ss_pred CCCChHHHHHHH----HHHH--------HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 017091 268 DLLSGGQKQRIA----IARA--------ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 268 ~~LSgGq~QRv~----iAra--------l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~ 333 (377)
..||||||||++ +|++ +..+|++++|||||++||+.+...+++++.++ +.++||+||++.
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l------~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL------DLDFVMTSEREW 1317 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh------CCCEEEEccchh
Confidence 579999999996 5755 55899999999999999999999999999887 678999999874
No 478
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.61 E-value=1.4e-07 Score=106.14 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=81.8
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC-CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 230 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~ 230 (377)
=+++..+++++++|+|++|+|||||++.+.+. ....+|.+++++..+... . . .+-.+++.-+ +.
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~-~----~--~~~~~~~~~~------~~-- 263 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS-M----E--IYSSANPDDY------NM-- 263 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc-h----h--hccccccccc------ch--
Confidence 34677788999999999999999999999544 455689998876322110 0 0 0001111000 00
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 017091 231 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310 (377)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~ 310 (377)
...+ ...-+.+.+.... . . ... .++.++| +..++-+|+||+- |.. ..++
T Consensus 264 -------~~~l----~~~~l~~il~~~~--~--~--~~~-~~~~~~~------L~~krvLLVLDdv----~~~---~~l~ 312 (1153)
T PLN03210 264 -------KLHL----QRAFLSEILDKKD--I--K--IYH-LGAMEER------LKHRKVLIFIDDL----DDQ---DVLD 312 (1153)
T ss_pred -------hHHH----HHHHHHHHhCCCC--c--c--cCC-HHHHHHH------HhCCeEEEEEeCC----CCH---HHHH
Confidence 0000 0001112222111 0 0 011 2555655 3356667888884 332 3345
Q ss_pred HHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEe
Q 017091 311 VLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVID 345 (377)
Q Consensus 311 ~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~ 345 (377)
.+....+....|.+||++|||...+.. +|+++.+.
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 554433322458899999999998864 68887764
No 479
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.60 E-value=3e-08 Score=91.31 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=39.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh-hCCCCCCCeEEECCEeCCCCCHHH---HhcceEEEccCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRW---LREKIGFVGQEP 217 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~ 217 (377)
-+++|+.+.|.||+|||||||...++ ...++..+-+++.... +..+ ..+.+++.+|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHHH
Confidence 58899999999999999999988654 2334555566776532 2222 234467666653
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=98.57 E-value=7.5e-08 Score=94.66 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=65.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
-++.+.-.+++|++++|+|+||+|||||++.|+|..+|..|+|.+++..-.. ...++++.+++|+..+++.....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4666777788999999999999999999999999999999999998754322 2235679999999988877677776
Q ss_pred hcC
Q 017091 229 MYG 231 (377)
Q Consensus 229 ~~~ 231 (377)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 654
No 481
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.56 E-value=2.4e-07 Score=97.21 Aligned_cols=110 Identities=25% Similarity=0.261 Sum_probs=65.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC--------eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--------QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 230 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--------~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~ 230 (377)
..+.++|+||||||||||++++.++.++..| -|.++|..+. ++...+ .|..+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhc
Confidence 3567999999999999999999999875544 3677765542 222111 11112
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 017091 231 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310 (377)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~ 310 (377)
+...+.........++..++.+....+ ...+||| +|+||| +..||+..+..+.+
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~---------v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGL---------VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCc---------hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 211000001111122222222211111 1357888 999999 79999999999998
Q ss_pred HHHH
Q 017091 311 VLHA 314 (377)
Q Consensus 311 ~l~~ 314 (377)
.+++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8875
No 482
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.49 E-value=2.6e-07 Score=90.72 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=51.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCC-eEEECCEeCCCCCHHHHhcceEEEccCCc-----CccccHHHHHh
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQ-----LLQMDIKSNIM 229 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----l~~~tv~eni~ 229 (377)
++|..++|+||+||||||+++.|++.+.+ ..+ .|.....++ .+....++...++++|... -|...+++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 334 565555444 3544444555678888642 35567777766
Q ss_pred c
Q 017091 230 Y 230 (377)
Q Consensus 230 ~ 230 (377)
.
T Consensus 211 ~ 211 (358)
T TIGR02524 211 R 211 (358)
T ss_pred c
Confidence 4
No 483
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.48 E-value=5.3e-06 Score=90.06 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=43.1
Q ss_pred HHcCCCCEEEEeCcCCCCC-HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 283 AILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 283 al~~~p~illlDEPts~LD-~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.+..+|.++++|||...|| +...+.+.+.++.+++ .|..++++||+++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK---LNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHH
Confidence 4567899999999999999 8888899999998864 477899999998763
No 484
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.48 E-value=8.6e-08 Score=87.07 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=27.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 485
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.44 E-value=1.3e-07 Score=94.55 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=59.7
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEEC---CEeCCCCCHHHHh---cceEEE-----c
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYID---GFPLTDLDIRWLR---EKIGFV-----G 214 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~---g~~i~~~~~~~~r---~~i~~v-----~ 214 (377)
..+++++ |++.+|++++|+|+||||||||+++|+|+.++ +.|.|.+. |.++.++....++ .+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 4588988 99999999999999999999999999999854 44667664 4555444333332 235566 8
Q ss_pred cCCcC------ccccHHHHHhc
Q 017091 215 QEPQL------LQMDIKSNIMY 230 (377)
Q Consensus 215 Q~~~l------~~~tv~eni~~ 230 (377)
|+|.. ...++.|.+..
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~ 252 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRD 252 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHH
Confidence 98742 12467777754
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.44 E-value=4.2e-07 Score=80.40 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE-----------CCEeCCCCCHHHH-----hcceEEEccCCcCc
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-----------DGFPLTDLDIRWL-----REKIGFVGQEPQLL 220 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~l~ 220 (377)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+....+..++ ...++.++|...++
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLS 76 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcc
Confidence 6789999999999999999999987654 65554 5555544444332 23477777776554
No 487
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.39 E-value=2.4e-07 Score=94.40 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=56.8
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
++|++..|+.. .+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq~---~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE---QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH---HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888643 5999999999999999999999999999999999999999999999887664
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.39 E-value=2.6e-07 Score=92.28 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=56.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
.++.++++..|..+ ..+++++ |++.+||+++|+|+||+|||||+++|+|..+|+.|.+.+.|..
T Consensus 129 ~~~r~~v~~~l~tG--i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTG--IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCC--ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47778888888543 4699999 9999999999999999999999999999999999988887764
No 489
>PLN02796 D-glycerate 3-kinase
Probab=98.39 E-value=1.2e-07 Score=91.74 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=48.9
Q ss_pred CceeeeeEEE---eCCcE-----EEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHHh
Q 017091 148 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 148 ~vL~~isl~i---~~Ge~-----~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r 207 (377)
.+++++++.+ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+.......++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~ 150 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLA 150 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHH
Confidence 4788888887 67776 9999999999999999999999875 68899999887654444443
No 490
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.38 E-value=1.1e-06 Score=89.10 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe-EEECCEe
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFP 197 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~-I~i~g~~ 197 (377)
-+.+|+++.|.|++|+|||||+..++.......+. +++.+.+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 58999999999999999999999887765444444 4556643
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.37 E-value=4.4e-07 Score=83.75 Aligned_cols=54 Identities=30% Similarity=0.491 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe----EEECCEeCCCCCHHHHhcceEEEccC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ----IYIDGFPLTDLDIRWLREKIGFVGQE 216 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~----I~i~g~~i~~~~~~~~r~~i~~v~Q~ 216 (377)
+..++||.||||||||||++.|++++++++|. |.+|+... + ...+...+++++.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~-~~~~~~~g~~~~~ 89 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---D-NAVLDAHGLRPRK 89 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---C-HHHHHhccccccc
Confidence 35799999999999999999999999999998 44444221 2 2223345666653
No 492
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.36 E-value=2.9e-07 Score=66.74 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=31.0
Q ss_pred eeeeeEEEeC-CcEEEEEcCCCCcHHHHHHHHhhCCCCCC
Q 017091 150 LNHVCLTIEA-NEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188 (377)
Q Consensus 150 L~~isl~i~~-Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~ 188 (377)
+++-++++.+ |+.+.|+||||||||||+.++.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4456677776 57999999999999999999886665543
No 493
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.35 E-value=4.9e-07 Score=87.34 Aligned_cols=58 Identities=26% Similarity=0.308 Sum_probs=49.2
Q ss_pred EEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 137 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 137 v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
++..|.. ...+++++ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.+..-|.+
T Consensus 49 ~~~~l~t--Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 49 IDEVLPT--GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred ceeEcCC--CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 3344543 24699999 9999999999999999999999999999999999888776654
No 494
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.35 E-value=3.9e-07 Score=88.12 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=53.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC------CHHHHhcceEEEccCCcCc-cccHHHHHh
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRWLREKIGFVGQEPQLL-QMDIKSNIM 229 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~------~~~~~r~~i~~v~Q~~~l~-~~tv~eni~ 229 (377)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|.... .....+..+.+++|..... ..++++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999999999998889999988776332 1122345688888854433 234455543
No 495
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.35 E-value=9e-06 Score=79.15 Aligned_cols=163 Identities=22% Similarity=0.206 Sum_probs=105.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHh-hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 232 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 232 (377)
-+-|++| ++.|+|+|=-|||||+..|. |.+..--| ||.+. +|.. ..+-... .+|..
T Consensus 237 gmgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE~-------------vVTd-~~lakae-ae~gr--- 293 (554)
T COG3044 237 GMGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRER-------------VVTD-VKLAKAE-AEEGR--- 293 (554)
T ss_pred ccCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCceE-------------EEeh-hhhhhhh-cccce---
Confidence 3568899 99999999999999999997 44433222 33221 0000 0000000 00000
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH------
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE------ 305 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~------ 305 (377)
...-..+..|++.+|.+-+|.... ..=||-+.+-..|=||+=...++|++||-+|+...--.
T Consensus 294 -----------~vsg~D~SlFi~~LPggkdTp~fvtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake 362 (554)
T COG3044 294 -----------CVSGLDLSLFINHLPGGKDTPDFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKE 362 (554)
T ss_pred -----------eeeccchHHHHHhCCCCCCCcccccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHH
Confidence 111234567899999777776654 35799999999999999999999999999998753221
Q ss_pred ----HHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEE
Q 017091 306 ----HYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 350 (377)
Q Consensus 306 ----~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~ 350 (377)
+-+..+..+..+....+.++|.||--+..+. .+||+++|++-+-.
T Consensus 363 ~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 363 SEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred hcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 1122222222221123489999999888765 59999999998765
No 496
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=4.6e-06 Score=69.49 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCch
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLS 333 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~itH~l~ 333 (377)
.+......+...++.++++||.-.. ++.....+.+.+....... ..+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4555566677789999999998765 5566667777777764210 14678999998654
No 497
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.29 E-value=8.2e-07 Score=84.61 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=37.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--CCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
++||.||||||||||+++|.+++. |++|+|.+-+.|--..+... ++..++.
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~-l~~~g~~ 116 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQV-LKERNLM 116 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHH-HHHcCCc
Confidence 899999999999999999999998 78898877555543333333 3334543
No 498
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=98.28 E-value=9.1e-06 Score=74.51 Aligned_cols=85 Identities=21% Similarity=0.292 Sum_probs=74.9
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS-IMIGQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~l~~~~~~~~ 80 (377)
+++||+||.|+++.+++.+..++..+...+..+...........+..+..++++++|+++ +..|.+|+|.++++..+..
T Consensus 190 ~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~ 269 (275)
T PF00664_consen 190 IRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSS 269 (275)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 589999999999999999999998888888877777777777777777778889999999 9999999999999999999
Q ss_pred HHHHHH
Q 017091 81 WLIYAT 86 (377)
Q Consensus 81 ~~~~~~ 86 (377)
.+..|+
T Consensus 270 ~~~~pl 275 (275)
T PF00664_consen 270 QLINPL 275 (275)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 888874
No 499
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.27 E-value=3.3e-06 Score=83.40 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=33.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-ECCE
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGF 196 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-i~g~ 196 (377)
-+.+|+++.|.|++|+|||||+..++.......+.+. +.+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4889999999999999999999999877765556664 4554
No 500
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.26 E-value=9.8e-07 Score=88.47 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=47.9
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
..+++++ |++.+|++++|+|+||+|||||+++|+|..+++.|.|.+.|+.-.
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ 202 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGR 202 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChH
Confidence 4699999 999999999999999999999999999999999999998886543
Done!