Query 017091
Match_columns 377
No_of_seqs 398 out of 2426
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-72 4.1E-77 585.4 46.8 367 2-374 212-580 (587)
2 4f4c_A Multidrug resistance pr 100.0 5.8E-73 2E-77 632.8 47.6 367 2-373 285-654 (1321)
3 4a82_A Cystic fibrosis transme 100.0 8.3E-73 2.8E-77 585.9 44.2 365 2-372 210-576 (578)
4 3b5x_A Lipid A export ATP-bind 100.0 2.6E-71 8.8E-76 575.3 48.3 365 2-373 214-580 (582)
5 4f4c_A Multidrug resistance pr 100.0 5.9E-73 2E-77 632.8 37.4 369 2-374 945-1318(1321)
6 3b60_A Lipid A export ATP-bind 100.0 2.1E-71 7.2E-76 576.0 44.2 365 2-373 214-580 (582)
7 2yl4_A ATP-binding cassette SU 100.0 3.3E-71 1.1E-75 575.9 45.4 369 2-374 211-585 (595)
8 3qf4_B Uncharacterized ABC tra 100.0 5E-72 1.7E-76 582.1 36.8 365 2-374 226-592 (598)
9 3g5u_A MCG1178, multidrug resi 100.0 5.4E-68 1.8E-72 591.4 38.1 367 2-373 257-626 (1284)
10 3nh6_A ATP-binding cassette SU 100.0 1.4E-66 4.7E-71 497.5 26.8 275 93-374 15-291 (306)
11 3g5u_A MCG1178, multidrug resi 100.0 6.1E-66 2.1E-70 574.9 34.8 369 2-374 900-1272(1284)
12 2ff7_A Alpha-hemolysin translo 100.0 3.4E-59 1.2E-63 434.7 30.7 236 131-372 7-245 (247)
13 2ixe_A Antigen peptide transpo 100.0 1.2E-58 4.3E-63 436.5 29.8 241 130-372 15-257 (271)
14 2ghi_A Transport protein; mult 100.0 7E-58 2.4E-62 429.0 29.3 238 130-373 16-255 (260)
15 1mv5_A LMRA, multidrug resista 100.0 4.6E-59 1.6E-63 433.0 19.3 235 132-372 2-238 (243)
16 3tui_C Methionine import ATP-b 100.0 1.2E-57 4.1E-62 443.5 22.6 222 130-362 23-255 (366)
17 3gfo_A Cobalt import ATP-bindi 100.0 3.4E-57 1.2E-61 427.0 21.3 223 131-366 7-239 (275)
18 3tif_A Uncharacterized ABC tra 100.0 4.9E-57 1.7E-61 417.2 18.5 221 132-359 2-233 (235)
19 4g1u_C Hemin import ATP-bindin 100.0 3.4E-56 1.1E-60 418.7 22.9 217 131-361 11-238 (266)
20 3fvq_A Fe(3+) IONS import ATP- 100.0 5.3E-56 1.8E-60 431.7 23.9 218 131-362 4-230 (359)
21 2cbz_A Multidrug resistance-as 100.0 1.8E-55 6.2E-60 407.2 24.8 227 131-374 3-231 (237)
22 3rlf_A Maltose/maltodextrin im 100.0 5E-56 1.7E-60 434.7 21.4 217 130-362 2-225 (381)
23 3gd7_A Fusion complex of cysti 100.0 1.8E-55 6.2E-60 433.3 25.3 226 129-362 17-244 (390)
24 2olj_A Amino acid ABC transpor 100.0 1.3E-55 4.6E-60 413.7 22.9 217 131-362 24-250 (263)
25 1ji0_A ABC transporter; ATP bi 100.0 3.4E-55 1.2E-59 406.2 25.3 216 131-361 6-229 (240)
26 1b0u_A Histidine permease; ABC 100.0 5.3E-55 1.8E-59 409.8 24.6 217 131-362 6-244 (262)
27 1vpl_A ABC transporter, ATP-bi 100.0 3.7E-55 1.3E-59 409.3 23.3 217 128-360 12-235 (256)
28 2pze_A Cystic fibrosis transme 100.0 1.7E-54 6E-59 398.7 26.7 219 131-369 6-227 (229)
29 1g6h_A High-affinity branched- 100.0 5.1E-55 1.8E-59 409.0 22.8 216 131-357 7-239 (257)
30 2yyz_A Sugar ABC transporter, 100.0 7.6E-55 2.6E-59 424.5 24.6 216 131-362 3-225 (359)
31 2pcj_A ABC transporter, lipopr 100.0 3.7E-55 1.3E-59 401.9 20.2 213 131-354 4-222 (224)
32 2it1_A 362AA long hypothetical 100.0 6.5E-55 2.2E-59 425.4 21.7 216 131-362 3-225 (362)
33 1v43_A Sugar-binding transport 100.0 1.9E-54 6.5E-59 423.5 24.1 218 129-362 9-233 (372)
34 1z47_A CYSA, putative ABC-tran 100.0 1.4E-54 4.8E-59 421.7 22.5 216 131-362 14-237 (355)
35 1oxx_K GLCV, glucose, ABC tran 100.0 8.1E-55 2.8E-59 424.1 20.5 218 131-362 3-232 (353)
36 2yz2_A Putative ABC transporte 100.0 3.8E-54 1.3E-58 405.0 23.9 216 131-361 2-228 (266)
37 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-54 4.1E-59 410.7 19.2 216 131-361 21-253 (279)
38 1g29_1 MALK, maltose transport 100.0 1.7E-54 6E-59 424.3 20.7 216 131-362 3-231 (372)
39 3d31_A Sulfate/molybdate ABC t 100.0 3.8E-54 1.3E-58 418.2 22.2 214 132-362 2-219 (348)
40 2onk_A Molybdate/tungstate ABC 100.0 4.9E-54 1.7E-58 398.2 20.9 215 132-362 2-218 (240)
41 2qi9_C Vitamin B12 import ATP- 100.0 1.6E-53 5.4E-58 396.7 22.1 210 131-360 4-222 (249)
42 2d2e_A SUFC protein; ABC-ATPas 100.0 1.7E-53 6E-58 397.0 18.7 212 131-357 3-230 (250)
43 2zu0_C Probable ATP-dependent 100.0 1.2E-52 4.2E-57 394.8 18.2 219 130-359 19-253 (267)
44 2nq2_C Hypothetical ABC transp 100.0 4.6E-52 1.6E-56 387.9 20.3 204 131-361 4-218 (253)
45 2bbs_A Cystic fibrosis transme 100.0 3.8E-51 1.3E-55 388.5 24.5 235 105-367 17-254 (290)
46 2pjz_A Hypothetical protein ST 100.0 1.3E-51 4.5E-56 386.6 18.2 209 132-361 2-216 (263)
47 1sgw_A Putative ABC transporte 100.0 8.5E-51 2.9E-55 369.9 12.6 196 131-349 10-210 (214)
48 3bk7_A ABC transporter ATP-bin 100.0 7.2E-43 2.5E-47 362.0 14.7 203 131-361 357-564 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 6.1E-43 2.1E-47 358.6 13.1 202 131-360 287-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.9E-42 1E-46 353.0 16.8 202 131-359 269-476 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 7.3E-41 2.5E-45 346.9 12.1 198 131-347 83-304 (607)
52 3j16_B RLI1P; ribosome recycli 100.0 1.7E-40 5.7E-45 343.9 14.6 202 135-362 350-561 (608)
53 2iw3_A Elongation factor 3A; a 100.0 4.7E-40 1.6E-44 352.7 18.6 197 131-354 671-981 (986)
54 3ux8_A Excinuclease ABC, A sub 100.0 4.7E-40 1.6E-44 346.1 16.4 210 147-363 31-301 (670)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 9.5E-41 3.2E-45 342.4 9.8 197 132-347 21-234 (538)
56 2iw3_A Elongation factor 3A; a 100.0 1.8E-37 6.2E-42 332.7 27.6 196 131-360 435-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.8E-38 6.3E-43 334.0 11.9 205 147-365 335-645 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 5.9E-38 2E-42 324.8 12.7 197 136-349 82-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 9.2E-38 3.2E-42 319.7 7.5 192 136-348 4-214 (538)
60 2v9p_A Replication protein E1; 100.0 1.7E-41 5.9E-46 323.3 -19.0 238 62-371 35-274 (305)
61 3pih_A Uvrabc system protein A 100.0 2.2E-35 7.4E-40 316.2 16.7 209 148-369 598-911 (916)
62 2r6f_A Excinuclease ABC subuni 100.0 4.7E-35 1.6E-39 312.0 14.5 215 131-366 629-948 (972)
63 2vf7_A UVRA2, excinuclease ABC 100.0 8.3E-35 2.8E-39 309.3 14.5 217 131-365 502-832 (842)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.5E-38 5.2E-43 319.6 -15.1 192 131-360 118-338 (460)
65 2ygr_A Uvrabc system protein A 100.0 2.9E-34 1E-38 306.8 15.6 217 131-368 647-968 (993)
66 4aby_A DNA repair protein RECN 100.0 3.7E-33 1.3E-37 277.2 16.7 199 149-353 50-381 (415)
67 1e69_A Chromosome segregation 100.0 8.3E-30 2.8E-34 245.5 15.1 202 151-357 16-310 (322)
68 3b85_A Phosphate starvation-in 100.0 8.1E-33 2.8E-37 250.4 -6.2 157 148-348 14-171 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 2E-28 6.8E-33 239.8 18.4 81 268-351 278-364 (365)
70 4gp7_A Metallophosphoesterase; 100.0 6.1E-30 2.1E-34 224.3 5.7 149 152-341 1-168 (171)
71 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.2E-31 4.2E-36 259.1 -16.9 206 66-348 75-291 (330)
72 1tq4_A IIGP1, interferon-induc 99.9 2.4E-30 8.2E-35 256.1 -9.5 176 148-347 37-254 (413)
73 1ye8_A Protein THEP1, hypothet 99.9 1.1E-28 3.7E-33 218.0 1.4 145 162-351 2-159 (178)
74 1znw_A Guanylate kinase, GMP k 99.9 1.9E-29 6.5E-34 227.7 -9.0 171 147-345 9-202 (207)
75 2dpy_A FLII, flagellum-specifi 99.9 1.3E-28 4.3E-33 246.2 -5.0 199 130-360 130-344 (438)
76 3b9q_A Chloroplast SRP recepto 99.9 2.4E-28 8.1E-33 233.2 -3.7 175 149-350 89-285 (302)
77 1z6g_A Guanylate kinase; struc 99.9 6.5E-30 2.2E-34 232.9 -14.2 153 148-317 11-175 (218)
78 2og2_A Putative signal recogni 99.9 4.2E-27 1.4E-31 229.0 -2.3 172 151-349 148-341 (359)
79 3sop_A Neuronal-specific septi 99.9 3.3E-27 1.1E-31 221.9 -4.5 147 162-335 4-153 (270)
80 2o5v_A DNA replication and rep 99.9 3.8E-24 1.3E-28 208.4 16.9 81 269-358 265-354 (359)
81 3aez_A Pantothenate kinase; tr 99.9 3.4E-28 1.2E-32 233.1 -15.2 207 100-348 15-246 (312)
82 2obl_A ESCN; ATPase, hydrolase 99.9 7.7E-26 2.6E-30 219.6 -0.3 194 131-358 45-253 (347)
83 2o8b_B DNA mismatch repair pro 99.9 6.7E-24 2.3E-28 230.8 13.6 171 131-355 750-937 (1022)
84 1tf7_A KAIC; homohexamer, hexa 99.9 4.6E-26 1.6E-30 233.2 -4.5 167 147-346 25-209 (525)
85 1cr0_A DNA primase/helicase; R 99.9 9.3E-24 3.2E-28 200.4 7.3 183 148-349 23-237 (296)
86 3qkt_A DNA double-strand break 99.9 3.1E-22 1.1E-26 193.9 16.1 75 268-345 247-327 (339)
87 4ad8_A DNA repair protein RECN 99.9 8.2E-23 2.8E-27 208.7 12.1 75 269-347 396-473 (517)
88 3pih_A Uvrabc system protein A 99.9 3.5E-23 1.2E-27 221.9 7.9 164 176-362 384-562 (916)
89 2ehv_A Hypothetical protein PH 99.9 1.1E-23 3.9E-28 193.6 1.5 182 131-345 6-206 (251)
90 3thx_A DNA mismatch repair pro 99.9 1.6E-21 5.3E-26 210.0 16.8 168 131-358 631-811 (934)
91 2eyu_A Twitching motility prot 99.9 3.6E-23 1.2E-27 193.4 3.5 131 148-345 15-146 (261)
92 1tf7_A KAIC; homohexamer, hexa 99.9 1.1E-22 3.7E-27 208.2 6.9 151 154-348 275-444 (525)
93 2jeo_A Uridine-cytidine kinase 99.9 2.5E-23 8.7E-28 192.3 -0.9 170 147-360 12-187 (245)
94 4a74_A DNA repair and recombin 99.8 1.6E-22 5.5E-27 183.6 3.5 149 156-347 21-200 (231)
95 1ewq_A DNA mismatch repair pro 99.8 4.7E-22 1.6E-26 210.4 6.7 148 130-338 549-704 (765)
96 2vf7_A UVRA2, excinuclease ABC 99.8 5.7E-22 1.9E-26 210.9 6.0 181 168-361 270-476 (842)
97 2r6f_A Excinuclease ABC subuni 99.8 2.4E-21 8.1E-26 206.8 10.3 136 220-361 450-601 (972)
98 2qnr_A Septin-2, protein NEDD5 99.8 6.2E-23 2.1E-27 195.7 -2.8 164 135-333 2-168 (301)
99 1w1w_A Structural maintenance 99.8 4.2E-21 1.4E-25 191.7 10.0 74 269-345 333-410 (430)
100 3szr_A Interferon-induced GTP- 99.8 1.7E-23 5.8E-28 217.4 -8.8 191 131-357 10-234 (608)
101 2i3b_A HCR-ntpase, human cance 99.8 6.2E-23 2.1E-27 182.7 -4.5 157 160-353 1-169 (189)
102 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 3.5E-20 1.2E-24 158.4 11.7 79 268-349 56-142 (148)
103 2ygr_A Uvrabc system protein A 99.8 5.1E-20 1.7E-24 197.3 14.3 137 219-361 466-618 (993)
104 1pzn_A RAD51, DNA repair and r 99.8 1.4E-21 4.7E-26 190.1 2.0 164 148-354 118-309 (349)
105 2w0m_A SSO2452; RECA, SSPF, un 99.8 2.2E-21 7.6E-26 176.0 3.2 167 147-347 9-192 (235)
106 3thx_B DNA mismatch repair pro 99.8 3.9E-21 1.3E-25 206.3 5.5 158 131-339 640-803 (918)
107 1rj9_A FTSY, signal recognitio 99.8 6.4E-22 2.2E-26 188.8 -1.4 166 159-349 101-285 (304)
108 3asz_A Uridine kinase; cytidin 99.8 2.5E-23 8.7E-28 187.3 -11.8 143 157-332 3-161 (211)
109 2gza_A Type IV secretion syste 99.8 3E-24 1E-28 209.8 -19.8 228 54-347 51-302 (361)
110 1lw7_A Transcriptional regulat 99.8 2.5E-23 8.4E-28 203.6 -14.7 178 149-359 157-354 (365)
111 2f1r_A Molybdopterin-guanine d 99.8 2E-22 6.8E-27 176.6 -8.3 136 161-316 3-160 (171)
112 1pui_A ENGB, probable GTP-bind 99.8 5.6E-22 1.9E-26 177.6 -6.5 170 131-317 3-198 (210)
113 3jvv_A Twitching mobility prot 99.8 3.4E-20 1.2E-24 180.5 4.9 146 135-346 92-245 (356)
114 1wb9_A DNA mismatch repair pro 99.8 8.3E-20 2.8E-24 194.2 6.8 151 147-350 595-748 (800)
115 2qag_C Septin-7; cell cycle, c 99.8 1.7E-20 5.7E-25 186.1 -0.3 164 131-334 11-179 (418)
116 1s96_A Guanylate kinase, GMP k 99.7 1.3E-19 4.4E-24 165.0 0.0 144 154-360 10-160 (219)
117 1nlf_A Regulatory protein REPA 99.7 2E-18 6.7E-23 162.4 7.4 153 156-335 26-184 (279)
118 1lvg_A Guanylate kinase, GMP k 99.7 1E-20 3.6E-25 169.4 -8.6 158 158-346 2-173 (198)
119 2qag_B Septin-6, protein NEDD5 99.7 5E-19 1.7E-23 175.1 2.5 179 131-331 16-218 (427)
120 3kta_B Chromosome segregation 99.7 2.2E-17 7.5E-22 144.6 10.4 78 268-349 63-146 (173)
121 2ewv_A Twitching motility prot 99.7 2.3E-18 7.8E-23 168.7 2.8 128 148-342 126-254 (372)
122 2cvh_A DNA repair and recombin 99.7 8.4E-17 2.9E-21 144.8 12.5 153 148-347 7-185 (220)
123 1nij_A Hypothetical protein YJ 99.7 5.8E-19 2E-23 169.5 -6.2 151 161-333 5-190 (318)
124 1zp6_A Hypothetical protein AT 99.7 3.1E-19 1E-23 157.7 -8.6 140 156-315 5-147 (191)
125 2qm8_A GTPase/ATPase; G protei 99.7 5.9E-20 2E-24 177.7 -15.2 175 131-316 29-259 (337)
126 1n0w_A DNA repair protein RAD5 99.6 1.5E-16 5.3E-21 145.2 8.1 147 156-347 20-209 (243)
127 2bdt_A BH3686; alpha-beta prot 99.6 2.7E-20 9.3E-25 164.6 -17.9 172 160-360 2-184 (189)
128 2bbw_A Adenylate kinase 4, AK4 99.6 2E-18 6.8E-23 159.3 -6.5 139 159-317 26-198 (246)
129 1odf_A YGR205W, hypothetical 3 99.6 1.6E-18 5.4E-23 164.2 -8.0 130 158-303 29-168 (290)
130 2yhs_A FTSY, cell division pro 99.6 2E-17 6.9E-22 165.8 -0.5 156 150-330 283-447 (503)
131 1htw_A HI0065; nucleotide-bind 99.6 1.8E-17 6.3E-22 143.1 -2.3 89 133-230 9-97 (158)
132 3lda_A DNA repair protein RAD5 99.6 1.4E-15 4.9E-20 149.9 7.1 149 156-348 174-364 (400)
133 3e70_C DPA, signal recognition 99.6 1.9E-15 6.3E-20 145.4 7.6 166 156-350 125-307 (328)
134 2rcn_A Probable GTPase ENGC; Y 99.6 1.8E-16 6.1E-21 153.8 -2.0 122 148-284 204-328 (358)
135 1p9r_A General secretion pathw 99.5 2.1E-18 7.2E-23 171.1 -16.6 129 149-292 158-314 (418)
136 3auy_A DNA double-strand break 99.5 1.5E-14 5.1E-19 141.5 10.6 74 268-345 279-359 (371)
137 1sxj_E Activator 1 40 kDa subu 99.5 5.8E-15 2E-19 142.6 6.4 138 162-335 38-177 (354)
138 3ec2_A DNA replication protein 99.5 1.5E-15 5.2E-20 133.0 1.9 112 154-333 32-144 (180)
139 2yv5_A YJEQ protein; hydrolase 99.5 5.4E-16 1.8E-20 147.7 -1.5 116 155-282 160-300 (302)
140 2kjq_A DNAA-related protein; s 99.5 1.7E-14 5.7E-19 123.2 7.1 92 149-331 30-124 (149)
141 2oap_1 GSPE-2, type II secreti 99.5 5.3E-17 1.8E-21 165.0 -11.8 174 148-339 248-458 (511)
142 3c8u_A Fructokinase; YP_612366 99.5 1.3E-16 4.5E-21 143.5 -8.8 139 157-340 19-168 (208)
143 2x8a_A Nuclear valosin-contain 99.5 4.4E-17 1.5E-21 153.1 -13.8 143 148-312 34-190 (274)
144 1u0l_A Probable GTPase ENGC; p 99.4 1E-14 3.5E-19 138.7 -0.9 103 155-258 164-289 (301)
145 1udx_A The GTP-binding protein 99.4 1.5E-14 5.2E-19 143.2 -3.5 156 150-330 147-306 (416)
146 1sq5_A Pantothenate kinase; P- 99.3 1.1E-14 3.8E-19 138.9 -6.4 139 130-302 36-199 (308)
147 3lnc_A Guanylate kinase, GMP k 99.3 3.6E-15 1.2E-19 136.0 -11.5 192 148-357 15-221 (231)
148 3euj_A Chromosome partition pr 99.3 1.1E-12 3.6E-17 131.9 5.2 53 148-201 18-70 (483)
149 1vma_A Cell division protein F 99.3 9E-13 3.1E-17 125.5 3.2 113 152-315 96-211 (306)
150 1in4_A RUVB, holliday junction 99.3 9.4E-16 3.2E-20 147.9 -18.8 172 132-337 19-207 (334)
151 1t9h_A YLOQ, probable GTPase E 99.3 2.1E-13 7.3E-18 129.7 -2.2 73 155-229 168-248 (307)
152 3tr0_A Guanylate kinase, GMP k 99.3 5.9E-13 2E-17 118.3 0.4 72 154-229 1-73 (205)
153 2px0_A Flagellar biosynthesis 99.3 8.7E-12 3E-16 118.2 8.3 142 158-352 103-247 (296)
154 1ls1_A Signal recognition part 99.2 1.8E-11 6.2E-16 115.9 10.2 142 132-329 77-219 (295)
155 2dr3_A UPF0273 protein PH0284; 99.2 5.2E-12 1.8E-16 115.1 5.1 171 148-346 10-196 (247)
156 1iy2_A ATP-dependent metallopr 99.2 1.3E-14 4.6E-19 136.0 -15.0 139 132-297 50-195 (278)
157 1qhl_A Protein (cell division 99.2 6.8E-13 2.3E-17 121.0 -4.1 75 131-216 9-91 (227)
158 2ius_A DNA translocase FTSK; n 99.1 3.1E-12 1.1E-16 129.3 -0.4 166 151-333 158-343 (512)
159 2r6a_A DNAB helicase, replicat 99.1 4.9E-12 1.7E-16 126.9 0.7 180 147-349 190-401 (454)
160 1ixz_A ATP-dependent metallopr 99.1 2.1E-14 7.1E-19 132.6 -15.4 140 132-298 26-172 (254)
161 2zr9_A Protein RECA, recombina 99.1 1.6E-10 5.4E-15 112.0 11.2 144 156-353 57-236 (349)
162 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.8E-14 9.5E-19 140.2 -16.0 170 156-355 16-208 (392)
163 1oix_A RAS-related protein RAB 99.1 2.7E-12 9.2E-17 113.2 -2.2 141 162-314 31-188 (191)
164 3k1j_A LON protease, ATP-depen 99.1 6.9E-12 2.4E-16 130.2 -3.0 156 148-314 48-227 (604)
165 4e22_A Cytidylate kinase; P-lo 99.0 1.9E-11 6.5E-16 113.1 -1.4 72 158-229 25-114 (252)
166 1cke_A CK, MSSA, protein (cyti 98.9 1.1E-11 3.7E-16 112.0 -7.0 125 160-297 5-150 (227)
167 2f9l_A RAB11B, member RAS onco 98.9 2.1E-10 7.3E-15 101.3 1.6 36 278-315 130-165 (199)
168 2dy1_A Elongation factor G; tr 98.9 6.4E-10 2.2E-14 116.5 4.9 134 154-334 3-138 (665)
169 1svm_A Large T antigen; AAA+ f 98.8 9.4E-12 3.2E-16 121.7 -11.3 136 148-298 157-312 (377)
170 4eun_A Thermoresistant glucoki 98.8 4.3E-10 1.5E-14 99.9 0.4 74 150-228 19-93 (200)
171 3t34_A Dynamin-related protein 98.8 1.5E-09 5E-14 105.5 4.0 174 148-330 25-212 (360)
172 3ney_A 55 kDa erythrocyte memb 98.8 7.9E-10 2.7E-14 98.4 1.0 71 155-231 14-97 (197)
173 3uie_A Adenylyl-sulfate kinase 98.8 2E-10 6.9E-15 102.1 -4.0 61 135-199 3-65 (200)
174 3nwj_A ATSK2; P loop, shikimat 98.8 6.5E-10 2.2E-14 102.7 -0.9 52 131-184 17-72 (250)
175 3kta_A Chromosome segregation 98.7 2.7E-09 9.4E-14 92.8 2.9 69 149-218 14-90 (182)
176 2j41_A Guanylate kinase; GMP, 98.7 4E-09 1.4E-13 93.4 3.9 62 155-220 1-63 (207)
177 2ce7_A Cell division protein F 98.7 1.3E-08 4.3E-13 102.4 7.7 118 148-335 39-167 (476)
178 3a00_A Guanylate kinase, GMP k 98.7 2.4E-09 8.1E-14 94.0 1.9 26 160-185 1-26 (186)
179 1kgd_A CASK, peripheral plasma 98.7 9.5E-10 3.2E-14 96.1 -0.8 35 159-193 4-39 (180)
180 3hr8_A Protein RECA; alpha and 98.7 1.3E-07 4.3E-12 91.6 13.1 60 156-218 57-117 (356)
181 1zu4_A FTSY; GTPase, signal re 98.7 4.3E-09 1.5E-13 100.7 2.7 80 149-228 94-184 (320)
182 2dhr_A FTSH; AAA+ protein, hex 98.7 1.3E-10 4.4E-15 117.5 -9.4 140 133-299 42-188 (499)
183 2qtf_A Protein HFLX, GTP-bindi 98.7 1E-08 3.5E-13 99.7 4.4 142 162-316 181-352 (364)
184 3vaa_A Shikimate kinase, SK; s 98.6 2.2E-08 7.6E-13 88.7 3.8 45 140-184 5-49 (199)
185 1jjv_A Dephospho-COA kinase; P 98.5 2.1E-08 7.2E-13 89.0 2.2 70 270-346 60-132 (206)
186 2qt1_A Nicotinamide riboside k 98.5 1.2E-08 4.2E-13 90.7 0.5 46 154-222 15-60 (207)
187 2xau_A PRE-mRNA-splicing facto 98.5 8.6E-08 2.9E-12 102.0 6.5 68 269-339 190-260 (773)
188 4a1f_A DNAB helicase, replicat 98.5 1E-07 3.5E-12 91.6 5.8 130 149-330 35-164 (338)
189 1knq_A Gluconate kinase; ALFA/ 98.4 4E-08 1.4E-12 84.8 0.5 38 158-199 6-43 (175)
190 2e87_A Hypothetical protein PH 98.4 4.4E-07 1.5E-11 87.9 7.3 61 268-333 230-293 (357)
191 1rz3_A Hypothetical protein rb 98.4 8.4E-08 2.9E-12 85.1 1.9 46 157-202 19-64 (201)
192 2vp4_A Deoxynucleoside kinase; 98.3 1.3E-07 4.6E-12 85.7 2.6 63 154-220 14-86 (230)
193 1fnn_A CDC6P, cell division co 98.3 9.6E-07 3.3E-11 85.3 8.7 49 286-335 124-172 (389)
194 3tau_A Guanylate kinase, GMP k 98.3 1.5E-07 5E-12 84.1 2.2 35 158-192 6-41 (208)
195 3tqc_A Pantothenate kinase; bi 98.2 1E-07 3.4E-12 91.1 -0.8 45 148-192 74-126 (321)
196 3cr8_A Sulfate adenylyltranfer 98.2 1.8E-07 6.1E-12 95.7 0.9 61 156-216 365-437 (552)
197 2z43_A DNA repair and recombin 98.2 6.7E-07 2.3E-11 85.4 3.0 28 156-183 103-130 (324)
198 1ega_A Protein (GTP-binding pr 98.2 5.7E-07 1.9E-11 85.1 2.4 146 160-336 8-163 (301)
199 1v5w_A DMC1, meiotic recombina 98.2 1.1E-06 3.7E-11 84.7 4.3 28 156-183 118-145 (343)
200 3ice_A Transcription terminati 98.1 2.6E-07 8.9E-12 89.7 -0.3 54 129-184 131-198 (422)
201 3kl4_A SRP54, signal recogniti 98.1 8.4E-06 2.9E-10 80.8 9.9 40 159-198 96-135 (433)
202 2qby_A CDC6 homolog 1, cell di 98.1 2.9E-06 9.8E-11 81.6 5.8 31 158-188 43-73 (386)
203 3m6a_A ATP-dependent protease 98.1 4.7E-07 1.6E-11 92.6 0.2 60 134-197 86-145 (543)
204 1ypw_A Transitional endoplasmi 98.0 5.5E-07 1.9E-11 96.3 -0.3 31 155-185 233-263 (806)
205 3b9p_A CG5977-PA, isoform A; A 98.0 3.7E-05 1.3E-09 71.7 12.1 75 271-345 97-187 (297)
206 2z4s_A Chromosomal replication 98.0 6.6E-06 2.2E-10 81.9 7.3 44 286-332 193-237 (440)
207 2p67_A LAO/AO transport system 98.0 6.2E-07 2.1E-11 86.3 -0.2 52 148-199 44-95 (341)
208 2pez_A Bifunctional 3'-phospho 98.0 1.2E-06 4.1E-11 75.8 0.8 40 158-198 3-44 (179)
209 1kag_A SKI, shikimate kinase I 98.0 2.7E-06 9.3E-11 72.8 3.0 33 159-195 3-35 (173)
210 3bh0_A DNAB-like replicative h 98.0 2.2E-05 7.4E-10 74.6 9.4 130 148-330 56-189 (315)
211 1mky_A Probable GTP-binding pr 97.9 4.1E-06 1.4E-10 83.3 4.1 68 162-229 182-262 (439)
212 3lxx_A GTPase IMAP family memb 97.9 8.2E-05 2.8E-09 67.2 11.4 28 162-189 31-58 (239)
213 2www_A Methylmalonic aciduria 97.9 3.2E-06 1.1E-10 81.6 1.9 42 158-199 72-113 (349)
214 4eaq_A DTMP kinase, thymidylat 97.9 6E-06 2.1E-10 74.9 3.5 45 149-194 12-59 (229)
215 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 8.1E-06 2.8E-10 69.0 3.8 31 151-182 15-45 (149)
216 1m7g_A Adenylylsulfate kinase; 97.8 3.5E-06 1.2E-10 75.0 0.6 43 155-197 20-64 (211)
217 1f6b_A SAR1; gtpases, N-termin 97.8 4.4E-06 1.5E-10 73.4 1.1 57 138-197 6-70 (198)
218 3cf0_A Transitional endoplasmi 97.8 3.4E-05 1.2E-09 72.6 7.3 30 155-184 44-73 (301)
219 2ffh_A Protein (FFH); SRP54, s 97.8 7.8E-06 2.7E-10 80.8 2.5 61 133-200 78-138 (425)
220 1m2o_B GTP-binding protein SAR 97.7 2.2E-05 7.4E-10 68.4 4.3 48 148-196 12-67 (190)
221 1l8q_A Chromosomal replication 97.7 5.4E-05 1.9E-09 71.7 7.4 27 160-186 37-63 (324)
222 3llm_A ATP-dependent RNA helic 97.7 3.6E-05 1.2E-09 69.6 5.8 143 157-335 73-223 (235)
223 2gj8_A MNME, tRNA modification 97.7 2.6E-05 8.9E-10 66.8 4.1 27 158-184 2-28 (172)
224 2qor_A Guanylate kinase; phosp 97.7 6.7E-06 2.3E-10 72.8 0.0 30 156-185 8-37 (204)
225 1j8m_F SRP54, signal recogniti 97.6 7.3E-06 2.5E-10 77.3 0.1 62 133-200 76-138 (297)
226 1u94_A RECA protein, recombina 97.6 0.00048 1.6E-08 66.5 12.0 36 148-184 49-87 (356)
227 3h4m_A Proteasome-activating n 97.6 0.00017 5.9E-09 66.6 8.4 28 157-184 48-75 (285)
228 1sxj_C Activator 1 40 kDa subu 97.6 2.8E-06 9.5E-11 81.3 -4.0 51 148-198 32-84 (340)
229 1y63_A LMAJ004144AAA protein; 97.6 3.5E-05 1.2E-09 67.0 3.3 32 152-183 2-33 (184)
230 2yvu_A Probable adenylyl-sulfa 97.6 2.7E-05 9.3E-10 67.6 2.5 40 156-195 9-49 (186)
231 3qks_A DNA double-strand break 97.5 4.8E-05 1.6E-09 67.5 3.8 30 151-181 15-44 (203)
232 2w58_A DNAI, primosome compone 97.5 5.9E-05 2E-09 66.2 4.3 25 161-185 55-79 (202)
233 3r20_A Cytidylate kinase; stru 97.5 6.2E-06 2.1E-10 75.1 -2.3 55 160-214 9-75 (233)
234 2qag_A Septin-2, protein NEDD5 97.5 6.7E-06 2.3E-10 79.7 -2.4 57 130-195 16-72 (361)
235 3bos_A Putative DNA replicatio 97.5 4.5E-05 1.6E-09 68.1 3.1 27 159-185 51-77 (242)
236 2wji_A Ferrous iron transport 97.4 0.00011 3.7E-09 62.2 4.8 24 162-185 5-28 (165)
237 2wjg_A FEOB, ferrous iron tran 97.4 7.5E-05 2.6E-09 64.1 3.6 22 162-183 9-30 (188)
238 1sxj_D Activator 1 41 kDa subu 97.4 3.3E-05 1.1E-09 73.6 1.2 43 287-334 133-175 (353)
239 2if2_A Dephospho-COA kinase; a 97.4 7E-05 2.4E-09 65.8 3.1 21 162-182 3-23 (204)
240 2q6t_A DNAB replication FORK h 97.4 0.00074 2.5E-08 67.0 10.9 175 148-345 188-396 (444)
241 3t61_A Gluconokinase; PSI-biol 97.4 4.1E-05 1.4E-09 67.3 1.4 35 160-198 18-52 (202)
242 2ohf_A Protein OLA1, GTP-bindi 97.4 7.4E-05 2.5E-09 73.1 3.3 41 156-196 18-69 (396)
243 2p5t_B PEZT; postsegregational 97.3 4.9E-05 1.7E-09 69.6 1.3 41 156-198 28-68 (253)
244 1np6_A Molybdopterin-guanine d 97.3 8.6E-05 2.9E-09 64.4 2.6 37 161-197 7-46 (174)
245 1njg_A DNA polymerase III subu 97.3 0.00038 1.3E-08 61.5 6.7 45 286-335 125-169 (250)
246 2zej_A Dardarin, leucine-rich 97.3 0.00012 4.3E-09 63.0 3.3 26 162-187 4-29 (184)
247 1lv7_A FTSH; alpha/beta domain 97.2 0.00015 5E-09 66.3 3.3 44 149-196 36-79 (257)
248 2ga8_A Hypothetical 39.9 kDa p 97.2 4.9E-05 1.7E-09 73.1 0.1 37 148-184 10-48 (359)
249 3cm0_A Adenylate kinase; ATP-b 97.2 0.00018 6E-09 62.0 3.0 26 158-183 2-27 (186)
250 1q3t_A Cytidylate kinase; nucl 97.1 0.00028 9.5E-09 63.7 3.7 36 157-192 13-51 (236)
251 1qhx_A CPT, protein (chloramph 97.1 0.00031 1.1E-08 60.0 3.7 26 160-185 3-28 (178)
252 3kb2_A SPBC2 prophage-derived 97.0 0.00031 1.1E-08 59.4 3.4 23 162-184 3-25 (173)
253 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00027 9.3E-09 68.8 3.4 59 286-347 261-335 (392)
254 3n70_A Transport activator; si 97.0 0.0025 8.4E-08 52.9 8.9 27 159-185 23-49 (145)
255 2v1u_A Cell division control p 97.0 0.00034 1.2E-08 67.0 3.7 28 158-185 42-69 (387)
256 3auy_A DNA double-strand break 97.0 0.00037 1.3E-08 67.5 4.0 32 149-181 15-46 (371)
257 1uf9_A TT1252 protein; P-loop, 97.0 0.00041 1.4E-08 60.4 3.5 32 161-197 9-40 (203)
258 2jaq_A Deoxyguanosine kinase; 97.0 0.00038 1.3E-08 60.6 3.2 23 162-184 2-24 (205)
259 1kht_A Adenylate kinase; phosp 96.9 0.00046 1.6E-08 59.4 3.6 25 160-184 3-27 (192)
260 3ihw_A Centg3; RAS, centaurin, 96.9 0.00081 2.8E-08 57.9 5.2 36 162-197 22-66 (184)
261 1gtv_A TMK, thymidylate kinase 96.9 0.00013 4.3E-09 64.4 -0.3 26 162-187 2-27 (214)
262 1vht_A Dephospho-COA kinase; s 96.9 0.00051 1.8E-08 60.9 3.6 32 159-195 3-34 (218)
263 3d8b_A Fidgetin-like protein 1 96.9 0.0045 1.5E-07 59.4 10.6 27 158-184 115-141 (357)
264 1xp8_A RECA protein, recombina 96.9 0.0039 1.3E-07 60.3 10.0 27 156-182 70-96 (366)
265 1jal_A YCHF protein; nucleotid 96.9 0.00087 3E-08 64.7 5.1 36 160-195 2-48 (363)
266 3lw7_A Adenylate kinase relate 96.9 0.00052 1.8E-08 57.8 3.2 19 162-180 3-21 (179)
267 2rhm_A Putative kinase; P-loop 96.9 0.00047 1.6E-08 59.5 3.0 27 158-184 3-29 (193)
268 1gvn_B Zeta; postsegregational 96.8 0.00064 2.2E-08 63.5 3.9 35 159-195 32-66 (287)
269 4dcu_A GTP-binding protein ENG 96.8 0.00013 4.6E-09 72.6 -0.9 56 273-335 88-144 (456)
270 1ex7_A Guanylate kinase; subst 96.8 0.00056 1.9E-08 59.9 3.1 22 162-183 3-24 (186)
271 3trf_A Shikimate kinase, SK; a 96.8 0.00065 2.2E-08 58.4 3.5 26 159-184 4-29 (185)
272 1fzq_A ADP-ribosylation factor 96.8 0.00059 2E-08 58.5 3.1 23 161-183 17-39 (181)
273 3iij_A Coilin-interacting nucl 96.8 0.0004 1.4E-08 59.6 1.9 27 158-184 9-35 (180)
274 2v54_A DTMP kinase, thymidylat 96.8 0.00084 2.9E-08 58.5 4.0 26 159-184 3-28 (204)
275 3bgw_A DNAB-like replicative h 96.7 0.007 2.4E-07 60.0 10.8 35 148-182 185-219 (444)
276 2ze6_A Isopentenyl transferase 96.7 0.0007 2.4E-08 62.0 3.2 23 162-184 3-25 (253)
277 1via_A Shikimate kinase; struc 96.7 0.0008 2.7E-08 57.5 3.1 23 162-184 6-28 (175)
278 1ly1_A Polynucleotide kinase; 96.7 0.00095 3.2E-08 56.8 3.3 22 161-182 3-24 (181)
279 2wwf_A Thymidilate kinase, put 96.7 0.00098 3.3E-08 58.5 3.5 27 158-184 8-34 (212)
280 2c95_A Adenylate kinase 1; tra 96.6 0.00091 3.1E-08 57.8 3.2 27 158-184 7-33 (196)
281 2plr_A DTMP kinase, probable t 96.6 0.001 3.4E-08 58.2 3.5 27 159-185 3-29 (213)
282 1ko7_A HPR kinase/phosphatase; 96.6 0.0015 5.3E-08 61.7 4.7 34 148-182 133-166 (314)
283 1nn5_A Similar to deoxythymidy 96.6 0.0011 3.8E-08 58.2 3.4 28 157-184 6-33 (215)
284 3cmw_A Protein RECA, recombina 96.6 0.0075 2.6E-07 68.6 10.8 35 157-191 729-763 (1706)
285 1xjc_A MOBB protein homolog; s 96.5 0.00092 3.2E-08 57.5 2.4 26 161-186 5-30 (169)
286 1tev_A UMP-CMP kinase; ploop, 96.5 0.0013 4.3E-08 56.7 3.4 25 160-184 3-27 (196)
287 2bwj_A Adenylate kinase 5; pho 96.5 0.00045 1.5E-08 60.0 0.3 28 157-184 9-36 (199)
288 1nks_A Adenylate kinase; therm 96.5 0.0012 4.2E-08 56.7 3.1 24 162-185 3-26 (194)
289 3ake_A Cytidylate kinase; CMP 96.5 0.0013 4.5E-08 57.4 3.3 23 162-184 4-26 (208)
290 4fcw_A Chaperone protein CLPB; 96.5 0.0011 3.7E-08 61.8 2.7 31 161-191 48-78 (311)
291 2qp9_X Vacuolar protein sortin 96.5 0.0091 3.1E-07 57.3 9.3 27 158-184 82-108 (355)
292 2z0h_A DTMP kinase, thymidylat 96.5 0.0014 4.9E-08 56.6 3.3 23 162-184 2-24 (197)
293 3k53_A Ferrous iron transport 96.5 0.0013 4.5E-08 60.5 3.1 45 296-342 144-189 (271)
294 2vli_A Antibiotic resistance p 96.4 0.0012 3.9E-08 56.6 2.4 26 159-184 4-29 (183)
295 2lkc_A Translation initiation 96.4 0.0044 1.5E-07 52.1 5.9 25 159-183 7-31 (178)
296 3dm5_A SRP54, signal recogniti 96.4 0.041 1.4E-06 54.4 13.4 35 159-193 99-133 (443)
297 1aky_A Adenylate kinase; ATP:A 96.4 0.0021 7.1E-08 57.1 3.7 26 159-184 3-28 (220)
298 3fb4_A Adenylate kinase; psych 96.3 0.0019 6.4E-08 57.0 3.3 23 162-184 2-24 (216)
299 2ged_A SR-beta, signal recogni 96.3 0.002 6.9E-08 55.3 3.4 24 161-184 49-72 (193)
300 1zuh_A Shikimate kinase; alpha 96.3 0.0022 7.4E-08 54.2 3.4 23 161-183 8-30 (168)
301 2erx_A GTP-binding protein DI- 96.3 0.0038 1.3E-07 52.0 4.9 22 162-183 5-26 (172)
302 1zd8_A GTP:AMP phosphotransfer 96.3 0.0021 7E-08 57.4 3.4 27 158-184 5-31 (227)
303 1z2a_A RAS-related protein RAB 96.3 0.0022 7.5E-08 53.3 3.3 22 162-183 7-28 (168)
304 3cbq_A GTP-binding protein REM 96.3 0.0017 5.8E-08 56.5 2.6 22 162-183 25-46 (195)
305 2cdn_A Adenylate kinase; phosp 96.3 0.0025 8.7E-08 55.6 3.7 25 160-184 20-44 (201)
306 2pbr_A DTMP kinase, thymidylat 96.3 0.0022 7.6E-08 55.1 3.3 23 162-184 2-24 (195)
307 1e6c_A Shikimate kinase; phosp 96.3 0.0019 6.4E-08 54.7 2.8 24 161-184 3-26 (173)
308 2pt5_A Shikimate kinase, SK; a 96.3 0.0024 8.2E-08 53.8 3.4 23 162-184 2-24 (168)
309 1z0j_A RAB-22, RAS-related pro 96.2 0.0036 1.2E-07 52.1 4.4 23 162-184 8-30 (170)
310 3dl0_A Adenylate kinase; phosp 96.2 0.0023 7.8E-08 56.5 3.3 23 162-184 2-24 (216)
311 1kao_A RAP2A; GTP-binding prot 96.2 0.0026 8.8E-08 52.7 3.4 22 162-183 5-26 (167)
312 2dyk_A GTP-binding protein; GT 96.2 0.0026 8.9E-08 52.6 3.4 23 162-184 3-25 (161)
313 2ce2_X GTPase HRAS; signaling 96.2 0.0023 8E-08 52.8 3.1 23 162-184 5-27 (166)
314 3q72_A GTP-binding protein RAD 96.2 0.002 6.9E-08 53.6 2.7 23 162-184 4-26 (166)
315 2iyv_A Shikimate kinase, SK; t 96.2 0.002 7E-08 55.2 2.7 24 161-184 3-26 (184)
316 2nzj_A GTP-binding protein REM 96.2 0.0026 8.8E-08 53.4 3.3 23 162-184 6-28 (175)
317 2grj_A Dephospho-COA kinase; T 96.2 0.0025 8.6E-08 55.9 3.3 23 161-183 13-35 (192)
318 1u8z_A RAS-related protein RAL 96.2 0.0027 9.4E-08 52.6 3.3 22 162-183 6-27 (168)
319 1zak_A Adenylate kinase; ATP:A 96.2 0.0022 7.4E-08 57.0 2.8 26 159-184 4-29 (222)
320 1ukz_A Uridylate kinase; trans 96.2 0.0026 8.7E-08 55.5 3.2 25 160-184 15-39 (203)
321 1z08_A RAS-related protein RAB 96.2 0.0029 9.8E-08 52.8 3.4 22 162-183 8-29 (170)
322 1qf9_A UMP/CMP kinase, protein 96.2 0.0025 8.5E-08 54.7 3.1 25 160-184 6-30 (194)
323 3q85_A GTP-binding protein REM 96.2 0.0027 9.4E-08 52.9 3.2 23 162-184 4-26 (169)
324 3iby_A Ferrous iron transport 96.2 0.0027 9.1E-08 58.2 3.4 23 162-184 3-25 (256)
325 1uj2_A Uridine-cytidine kinase 96.1 0.0026 9E-08 57.8 3.3 24 161-184 23-46 (252)
326 3b1v_A Ferrous iron uptake tra 96.1 0.0026 9E-08 58.9 3.3 23 162-184 5-27 (272)
327 1ky3_A GTP-binding protein YPT 96.1 0.003 1E-07 53.3 3.4 23 162-184 10-32 (182)
328 1ek0_A Protein (GTP-binding pr 96.1 0.003 1E-07 52.5 3.3 23 162-184 5-27 (170)
329 1c1y_A RAS-related protein RAP 96.1 0.003 1E-07 52.4 3.3 22 162-183 5-26 (167)
330 3lxw_A GTPase IMAP family memb 96.1 0.0028 9.6E-08 57.6 3.3 23 162-184 23-45 (247)
331 1g16_A RAS-related protein SEC 96.1 0.0028 9.6E-08 52.8 3.1 23 162-184 5-27 (170)
332 1a7j_A Phosphoribulokinase; tr 96.1 0.0015 5E-08 61.2 1.4 26 159-184 4-29 (290)
333 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0032 1.1E-07 53.0 3.4 22 162-183 9-30 (177)
334 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0031 1E-07 57.8 3.5 25 159-183 3-27 (260)
335 2fn4_A P23, RAS-related protei 96.1 0.003 1E-07 53.2 3.1 22 162-183 11-32 (181)
336 2ew1_A RAS-related protein RAB 96.1 0.0062 2.1E-07 53.2 5.3 22 162-183 28-49 (201)
337 3tw8_B RAS-related protein RAB 96.1 0.0029 9.9E-08 53.3 3.0 22 162-183 11-32 (181)
338 1svi_A GTP-binding protein YSX 96.1 0.0028 9.6E-08 54.4 2.9 23 161-183 24-46 (195)
339 1ypw_A Transitional endoplasmi 96.1 0.00024 8.1E-09 75.9 -4.8 45 153-199 504-548 (806)
340 3t1o_A Gliding protein MGLA; G 96.1 0.0036 1.2E-07 53.5 3.5 24 162-185 16-39 (198)
341 3tlx_A Adenylate kinase 2; str 96.0 0.0033 1.1E-07 57.0 3.4 26 159-184 28-53 (243)
342 3pqc_A Probable GTP-binding pr 96.0 0.003 1E-07 54.0 2.9 23 162-184 25-47 (195)
343 1r2q_A RAS-related protein RAB 96.0 0.0036 1.2E-07 52.0 3.3 22 162-183 8-29 (170)
344 3clv_A RAB5 protein, putative; 96.0 0.0037 1.3E-07 53.5 3.4 23 162-184 9-31 (208)
345 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0038 1.3E-07 53.0 3.4 23 162-184 6-28 (189)
346 2oil_A CATX-8, RAS-related pro 96.0 0.0038 1.3E-07 53.6 3.3 22 162-183 27-48 (193)
347 3bc1_A RAS-related protein RAB 96.0 0.0038 1.3E-07 53.1 3.3 22 162-183 13-34 (195)
348 1upt_A ARL1, ADP-ribosylation 96.0 0.0039 1.3E-07 52.0 3.3 23 161-183 8-30 (171)
349 3vfd_A Spastin; ATPase, microt 96.0 0.035 1.2E-06 53.6 10.6 25 159-183 147-171 (389)
350 2f6r_A COA synthase, bifunctio 96.0 0.0034 1.2E-07 58.3 3.1 22 161-182 76-97 (281)
351 3hu3_A Transitional endoplasmi 96.0 0.025 8.6E-07 56.7 9.7 28 157-184 235-262 (489)
352 1r8s_A ADP-ribosylation factor 96.0 0.0041 1.4E-07 51.6 3.3 21 162-182 2-22 (164)
353 2cxx_A Probable GTP-binding pr 96.0 0.0033 1.1E-07 53.5 2.8 23 162-184 3-25 (190)
354 2hxs_A RAB-26, RAS-related pro 95.9 0.0043 1.5E-07 52.2 3.5 22 162-183 8-29 (178)
355 2y8e_A RAB-protein 6, GH09086P 95.9 0.004 1.4E-07 52.3 3.1 22 162-183 16-37 (179)
356 2g6b_A RAS-related protein RAB 95.9 0.0044 1.5E-07 52.3 3.3 23 162-184 12-34 (180)
357 3t5d_A Septin-7; GTP-binding p 95.9 0.0034 1.2E-07 57.9 2.8 23 162-184 10-32 (274)
358 1z0f_A RAB14, member RAS oncog 95.9 0.0045 1.5E-07 52.0 3.3 23 162-184 17-39 (179)
359 1wf3_A GTP-binding protein; GT 95.9 0.0041 1.4E-07 58.4 3.3 22 162-183 9-30 (301)
360 2a9k_A RAS-related protein RAL 95.9 0.0045 1.5E-07 52.3 3.3 22 162-183 20-41 (187)
361 3con_A GTPase NRAS; structural 95.9 0.0045 1.5E-07 52.9 3.3 22 162-183 23-44 (190)
362 1moz_A ARL1, ADP-ribosylation 95.9 0.0026 8.8E-08 54.0 1.7 23 160-182 18-40 (183)
363 2xb4_A Adenylate kinase; ATP-b 95.9 0.0044 1.5E-07 55.2 3.3 23 162-184 2-24 (223)
364 1sky_E F1-ATPase, F1-ATP synth 95.9 0.0022 7.6E-08 63.8 1.5 45 148-193 140-184 (473)
365 2efe_B Small GTP-binding prote 95.8 0.0049 1.7E-07 52.0 3.4 23 162-184 14-36 (181)
366 3euj_A Chromosome partition pr 95.8 0.016 5.5E-07 58.0 7.6 70 268-345 378-464 (483)
367 2dby_A GTP-binding protein; GD 95.8 0.0042 1.4E-07 60.1 3.1 22 162-183 3-24 (368)
368 1jbk_A CLPB protein; beta barr 95.8 0.0057 2E-07 51.7 3.6 27 159-185 42-68 (195)
369 2bme_A RAB4A, RAS-related prot 95.8 0.0048 1.6E-07 52.4 3.1 23 162-184 12-34 (186)
370 1nrj_B SR-beta, signal recogni 95.8 0.0052 1.8E-07 53.9 3.3 23 162-184 14-36 (218)
371 3iev_A GTP-binding protein ERA 95.8 0.0049 1.7E-07 57.9 3.3 22 162-183 12-33 (308)
372 1vg8_A RAS-related protein RAB 95.8 0.0054 1.9E-07 53.1 3.4 23 162-184 10-32 (207)
373 3be4_A Adenylate kinase; malar 95.7 0.005 1.7E-07 54.6 3.2 26 159-184 4-29 (217)
374 2gf9_A RAS-related protein RAB 95.7 0.0055 1.9E-07 52.5 3.3 23 162-184 24-46 (189)
375 3kkq_A RAS-related protein M-R 95.7 0.0055 1.9E-07 51.9 3.3 22 162-183 20-41 (183)
376 2bov_A RAla, RAS-related prote 95.7 0.0054 1.9E-07 53.0 3.3 22 162-183 16-37 (206)
377 1e4v_A Adenylate kinase; trans 95.7 0.0049 1.7E-07 54.4 3.1 23 162-184 2-24 (214)
378 1m7b_A RND3/RHOE small GTP-bin 95.7 0.0052 1.8E-07 52.4 3.1 22 162-183 9-30 (184)
379 2xtp_A GTPase IMAP family memb 95.7 0.005 1.7E-07 55.9 3.2 23 162-184 24-46 (260)
380 3v9p_A DTMP kinase, thymidylat 95.7 0.0048 1.6E-07 55.6 2.9 29 157-185 22-50 (227)
381 3tkl_A RAS-related protein RAB 95.7 0.0057 2E-07 52.4 3.3 23 162-184 18-40 (196)
382 2fg5_A RAB-22B, RAS-related pr 95.7 0.0054 1.8E-07 52.8 3.1 23 162-184 25-47 (192)
383 1ksh_A ARF-like protein 2; sma 95.7 0.0056 1.9E-07 52.1 3.2 24 160-183 18-41 (186)
384 2gf0_A GTP-binding protein DI- 95.7 0.0055 1.9E-07 52.6 3.1 22 162-183 10-31 (199)
385 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.006 2.1E-07 51.6 3.3 22 162-183 7-28 (186)
386 2qmh_A HPR kinase/phosphorylas 95.7 0.0083 2.8E-07 52.9 4.2 35 148-183 23-57 (205)
387 1z06_A RAS-related protein RAB 95.7 0.0061 2.1E-07 52.1 3.4 22 162-183 22-43 (189)
388 2cjw_A GTP-binding protein GEM 95.7 0.006 2.1E-07 52.8 3.3 22 162-183 8-29 (192)
389 3cnl_A YLQF, putative uncharac 95.7 0.0061 2.1E-07 56.1 3.5 30 161-190 100-129 (262)
390 4dhe_A Probable GTP-binding pr 95.6 0.0033 1.1E-07 55.3 1.6 24 161-184 30-53 (223)
391 3oes_A GTPase rhebl1; small GT 95.6 0.0059 2E-07 52.9 3.1 23 162-184 26-48 (201)
392 3dz8_A RAS-related protein RAB 95.6 0.006 2.1E-07 52.3 3.1 23 162-184 25-47 (191)
393 2a5j_A RAS-related protein RAB 95.6 0.0066 2.3E-07 52.1 3.3 23 162-184 23-45 (191)
394 2h92_A Cytidylate kinase; ross 95.6 0.005 1.7E-07 54.3 2.6 25 160-184 3-27 (219)
395 1zbd_A Rabphilin-3A; G protein 95.6 0.0066 2.2E-07 52.5 3.3 23 162-184 10-32 (203)
396 3a8t_A Adenylate isopentenyltr 95.6 0.0072 2.5E-07 57.6 3.8 27 159-185 39-65 (339)
397 3t5g_A GTP-binding protein RHE 95.6 0.0062 2.1E-07 51.5 3.1 21 162-182 8-28 (181)
398 3d3q_A TRNA delta(2)-isopenten 95.6 0.006 2.1E-07 58.3 3.3 25 161-185 8-32 (340)
399 4edh_A DTMP kinase, thymidylat 95.6 0.0068 2.3E-07 54.0 3.4 28 158-185 4-31 (213)
400 2wsm_A Hydrogenase expression/ 95.6 0.0063 2.2E-07 53.5 3.2 23 162-184 32-54 (221)
401 3a1s_A Iron(II) transport prot 95.6 0.0067 2.3E-07 55.5 3.4 23 162-184 7-29 (258)
402 1ltq_A Polynucleotide kinase; 95.6 0.0065 2.2E-07 56.4 3.3 22 161-182 3-24 (301)
403 1ak2_A Adenylate kinase isoenz 95.6 0.0077 2.6E-07 53.9 3.7 26 159-184 15-40 (233)
404 3i8s_A Ferrous iron transport 95.5 0.0064 2.2E-07 56.1 3.2 23 162-184 5-27 (274)
405 2il1_A RAB12; G-protein, GDP, 95.5 0.0062 2.1E-07 52.4 2.9 22 162-183 28-49 (192)
406 2qu8_A Putative nucleolar GTP- 95.5 0.0066 2.3E-07 53.9 3.2 22 162-183 31-52 (228)
407 3reg_A RHO-like small GTPase; 95.5 0.0072 2.5E-07 51.9 3.3 23 162-184 25-47 (194)
408 1zd9_A ADP-ribosylation factor 95.5 0.0073 2.5E-07 51.7 3.3 22 162-183 24-45 (188)
409 1zj6_A ADP-ribosylation factor 95.5 0.0068 2.3E-07 51.7 3.1 22 161-182 17-38 (187)
410 2atv_A RERG, RAS-like estrogen 95.5 0.0075 2.6E-07 52.0 3.4 22 162-183 30-51 (196)
411 3lv8_A DTMP kinase, thymidylat 95.5 0.0074 2.5E-07 54.7 3.4 27 159-185 26-52 (236)
412 1x3s_A RAS-related protein RAB 95.5 0.0076 2.6E-07 51.5 3.3 22 162-183 17-38 (195)
413 3cmu_A Protein RECA, recombina 95.5 0.082 2.8E-06 61.1 12.6 29 157-185 380-408 (2050)
414 2p5s_A RAS and EF-hand domain 95.5 0.0076 2.6E-07 52.1 3.3 23 162-184 30-52 (199)
415 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0069 2.4E-07 52.6 3.1 22 162-183 10-31 (206)
416 4bas_A ADP-ribosylation factor 95.5 0.0068 2.3E-07 52.0 3.0 22 162-183 19-40 (199)
417 2o52_A RAS-related protein RAB 95.5 0.0068 2.3E-07 52.6 3.0 22 162-183 27-48 (200)
418 1q57_A DNA primase/helicase; d 95.5 0.14 4.7E-06 51.2 13.1 34 149-182 231-264 (503)
419 3cph_A RAS-related protein SEC 95.5 0.0076 2.6E-07 52.4 3.3 23 161-183 21-43 (213)
420 3bwd_D RAC-like GTP-binding pr 95.5 0.009 3.1E-07 50.4 3.7 23 161-183 9-31 (182)
421 2h57_A ADP-ribosylation factor 95.5 0.0053 1.8E-07 52.6 2.2 23 162-184 23-45 (190)
422 3zvl_A Bifunctional polynucleo 95.5 0.0073 2.5E-07 59.3 3.5 27 157-183 255-281 (416)
423 2iwr_A Centaurin gamma 1; ANK 95.5 0.0061 2.1E-07 51.4 2.6 22 162-183 9-30 (178)
424 2fv8_A H6, RHO-related GTP-bin 95.5 0.0073 2.5E-07 52.6 3.1 23 162-184 27-49 (207)
425 2h17_A ADP-ribosylation factor 95.5 0.0064 2.2E-07 51.7 2.6 22 162-183 23-44 (181)
426 3exa_A TRNA delta(2)-isopenten 95.5 0.008 2.7E-07 56.8 3.5 25 160-184 3-27 (322)
427 3llu_A RAS-related GTP-binding 95.4 0.0079 2.7E-07 52.0 3.2 24 162-185 22-45 (196)
428 1jwy_B Dynamin A GTPase domain 95.4 0.0071 2.4E-07 56.4 3.1 23 162-184 26-48 (315)
429 3c5c_A RAS-like protein 12; GD 95.4 0.0086 3E-07 51.3 3.4 22 162-183 23-44 (187)
430 2p65_A Hypothetical protein PF 95.4 0.0073 2.5E-07 51.0 2.8 27 159-185 42-68 (187)
431 1gwn_A RHO-related GTP-binding 95.4 0.0079 2.7E-07 52.7 3.1 22 162-183 30-51 (205)
432 4tmk_A Protein (thymidylate ki 95.4 0.0091 3.1E-07 53.2 3.5 27 159-185 2-28 (213)
433 2f7s_A C25KG, RAS-related prot 95.4 0.0086 2.9E-07 52.4 3.3 23 162-184 27-49 (217)
434 2fh5_B SR-beta, signal recogni 95.3 0.012 4.1E-07 51.3 4.1 23 162-184 9-31 (214)
435 2q3h_A RAS homolog gene family 95.3 0.009 3.1E-07 51.5 3.2 22 162-183 22-43 (201)
436 2i1q_A DNA repair and recombin 95.3 0.0093 3.2E-07 56.2 3.6 27 156-182 94-120 (322)
437 2j1l_A RHO-related GTP-binding 95.3 0.0084 2.9E-07 52.7 3.1 22 162-183 36-57 (214)
438 3crm_A TRNA delta(2)-isopenten 95.3 0.009 3.1E-07 56.6 3.4 24 161-184 6-29 (323)
439 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.01 3.4E-07 53.6 3.6 26 159-184 38-63 (262)
440 2gco_A H9, RHO-related GTP-bin 95.3 0.0088 3E-07 51.9 3.1 22 162-183 27-48 (201)
441 3def_A T7I23.11 protein; chlor 95.3 0.0086 3E-07 54.7 3.2 23 162-184 38-60 (262)
442 3ld9_A DTMP kinase, thymidylat 95.3 0.01 3.4E-07 53.3 3.4 28 158-185 19-46 (223)
443 2fu5_C RAS-related protein RAB 95.3 0.006 2E-07 51.7 1.9 22 162-183 10-31 (183)
444 3tmk_A Thymidylate kinase; pho 95.3 0.01 3.5E-07 53.0 3.4 29 158-186 3-31 (216)
445 1h65_A Chloroplast outer envel 95.3 0.0088 3E-07 54.9 3.1 23 162-184 41-63 (270)
446 2ocp_A DGK, deoxyguanosine kin 95.3 0.0095 3.3E-07 53.6 3.3 26 160-185 2-27 (241)
447 3pxi_A Negative regulator of g 95.2 0.043 1.5E-06 58.0 8.6 23 162-184 523-545 (758)
448 3umf_A Adenylate kinase; rossm 95.2 0.0081 2.8E-07 53.7 2.6 29 156-184 25-53 (217)
449 2aka_B Dynamin-1; fusion prote 95.2 0.0085 2.9E-07 55.3 2.9 23 162-184 28-50 (299)
450 2zts_A Putative uncharacterize 95.2 0.013 4.5E-07 52.2 4.1 59 285-345 133-206 (251)
451 2atx_A Small GTP binding prote 95.2 0.01 3.4E-07 50.9 3.1 22 162-183 20-41 (194)
452 3tqf_A HPR(Ser) kinase; transf 95.2 0.016 5.5E-07 49.9 4.3 33 149-182 6-38 (181)
453 2b6h_A ADP-ribosylation factor 95.2 0.0088 3E-07 51.6 2.7 22 161-182 30-51 (192)
454 2r62_A Cell division protease 95.2 0.003 1E-07 57.6 -0.3 32 150-183 36-67 (268)
455 2g3y_A GTP-binding protein GEM 95.1 0.012 3.9E-07 52.2 3.3 22 162-183 39-60 (211)
456 2hf9_A Probable hydrogenase ni 95.1 0.011 3.7E-07 52.2 3.1 23 162-184 40-62 (226)
457 3cmw_A Protein RECA, recombina 95.1 0.1 3.6E-06 59.4 11.6 35 149-183 370-406 (1706)
458 1p5z_B DCK, deoxycytidine kina 95.0 0.0077 2.6E-07 55.0 1.9 27 158-184 22-48 (263)
459 2hup_A RAS-related protein RAB 95.0 0.013 4.3E-07 50.9 3.1 22 162-183 31-52 (201)
460 4djt_A GTP-binding nuclear pro 95.0 0.0058 2E-07 53.6 0.9 22 162-183 13-34 (218)
461 4gzl_A RAS-related C3 botulinu 95.0 0.013 4.4E-07 51.1 3.1 21 162-182 32-52 (204)
462 3foz_A TRNA delta(2)-isopenten 95.0 0.014 4.7E-07 55.0 3.5 25 160-184 10-34 (316)
463 2v3c_C SRP54, signal recogniti 94.9 0.0038 1.3E-07 61.7 -0.4 37 161-197 100-136 (432)
464 3cpj_B GTP-binding protein YPT 94.9 0.015 5E-07 51.4 3.4 23 162-184 15-37 (223)
465 3q3j_B RHO-related GTP-binding 94.9 0.015 5.1E-07 51.1 3.3 22 162-183 29-50 (214)
466 2x77_A ADP-ribosylation factor 94.8 0.0088 3E-07 51.1 1.7 22 161-182 23-44 (189)
467 2yc2_C IFT27, small RAB-relate 94.8 0.0063 2.2E-07 52.5 0.8 22 162-183 22-43 (208)
468 2orw_A Thymidine kinase; TMTK, 94.7 0.014 4.9E-07 50.5 2.7 51 287-345 76-137 (184)
469 2j0v_A RAC-like GTP-binding pr 94.7 0.016 5.6E-07 50.4 3.1 22 162-183 11-32 (212)
470 3eph_A TRNA isopentenyltransfe 94.6 0.017 5.7E-07 56.4 3.2 24 161-184 3-26 (409)
471 3sr0_A Adenylate kinase; phosp 94.6 0.019 6.5E-07 50.8 3.3 23 162-184 2-24 (206)
472 1puj_A YLQF, conserved hypothe 94.5 0.023 7.8E-07 52.7 3.7 29 161-189 121-149 (282)
473 3uk6_A RUVB-like 2; hexameric 94.5 0.02 6.9E-07 54.5 3.4 38 158-195 68-105 (368)
474 3syl_A Protein CBBX; photosynt 94.5 0.022 7.4E-07 52.8 3.5 25 160-184 67-91 (309)
475 2chg_A Replication factor C sm 94.4 0.021 7.1E-07 49.4 3.0 44 286-334 101-144 (226)
476 4hlc_A DTMP kinase, thymidylat 94.4 0.023 8E-07 50.1 3.4 26 160-185 2-27 (205)
477 3r7w_A Gtpase1, GTP-binding pr 94.4 0.021 7.3E-07 53.5 3.2 25 160-184 3-27 (307)
478 1lw7_A Transcriptional regulat 94.2 0.017 5.7E-07 55.5 2.3 30 268-297 295-329 (365)
479 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.026 8.9E-07 53.3 3.5 27 158-184 43-69 (322)
480 3ec1_A YQEH GTPase; atnos1, at 94.2 0.024 8.1E-07 54.7 3.2 25 159-183 161-185 (369)
481 2eyu_A Twitching motility prot 94.1 3.7E-05 1.3E-09 71.1 -16.1 59 269-333 172-241 (261)
482 3p32_A Probable GTPase RV1496/ 94.1 0.025 8.4E-07 54.2 3.1 25 161-185 80-104 (355)
483 2vhj_A Ntpase P4, P4; non- hyd 94.1 0.028 9.7E-07 53.2 3.4 28 155-182 118-145 (331)
484 3gj0_A GTP-binding nuclear pro 94.1 0.019 6.6E-07 50.4 2.1 39 277-315 166-209 (221)
485 2hjg_A GTP-binding protein ENG 94.0 0.023 7.7E-07 56.0 2.8 22 162-183 5-26 (436)
486 2bjv_A PSP operon transcriptio 94.0 0.044 1.5E-06 49.7 4.5 28 159-186 28-55 (265)
487 1d2n_A N-ethylmaleimide-sensit 93.9 0.027 9.2E-07 51.4 2.9 26 158-183 62-87 (272)
488 1wxq_A GTP-binding protein; st 93.9 0.027 9.2E-07 54.9 3.1 23 162-184 2-24 (397)
489 3pvs_A Replication-associated 93.9 0.016 5.5E-07 57.5 1.4 37 151-187 39-77 (447)
490 2qgz_A Helicase loader, putati 93.9 0.034 1.2E-06 52.1 3.7 25 160-184 152-176 (308)
491 3hws_A ATP-dependent CLP prote 93.9 0.028 9.7E-07 53.7 3.2 25 160-184 51-75 (363)
492 3th5_A RAS-related C3 botulinu 93.0 0.01 3.5E-07 51.4 0.0 21 162-182 32-52 (204)
493 3t15_A Ribulose bisphosphate c 93.9 0.032 1.1E-06 51.8 3.4 25 160-184 36-60 (293)
494 3h2y_A GTPase family protein; 93.8 0.025 8.7E-07 54.5 2.7 26 159-184 159-184 (368)
495 3eie_A Vacuolar protein sortin 93.8 0.036 1.2E-06 52.1 3.6 26 158-183 49-74 (322)
496 3gmt_A Adenylate kinase; ssgci 93.8 0.035 1.2E-06 50.0 3.3 24 161-184 9-32 (230)
497 1ofh_A ATP-dependent HSL prote 93.8 0.031 1.1E-06 51.5 3.1 24 161-184 51-74 (310)
498 2orv_A Thymidine kinase; TP4A 93.8 0.37 1.3E-05 43.3 10.0 51 286-345 89-150 (234)
499 2x2e_A Dynamin-1; nitration, h 93.8 0.021 7.1E-07 54.6 1.9 23 162-184 33-55 (353)
500 1mky_A Probable GTP-binding pr 93.8 0.048 1.6E-06 53.7 4.6 22 162-183 3-24 (439)
No 1
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-72 Score=585.43 Aligned_cols=367 Identities=29% Similarity=0.478 Sum_probs=328.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+......+....+..+..++++++|++++..|.+++|.+++++.|...
T Consensus 212 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~ 291 (587)
T 3qf4_A 212 VRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQ 291 (587)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 68999999999999999999999888877776666666666666666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+.++..+++|+.++++.+++..........++..+.|+++||+|+|+++ ++++|+|+||+|++||
T Consensus 292 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge 370 (587)
T 3qf4_A 292 IMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGS 370 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCC
Confidence 999999999999999999999999999999876543221111122234579999999999753 3579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+++|+|+++|++|+|.+||+++.+++..++|++|+||||+|.+|++||+||+.++.+ ..+++++
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~ 449 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEI 449 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853 4567888
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++.++++.+|.|+++.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.++++.
T Consensus 450 ~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 526 (587)
T 3qf4_A 450 VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--- 526 (587)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---
T ss_pred HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---
Confidence 88999999999999999999998874 6899999999999999999999999999999999999999999999873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+|+|+|+||||++.+..||||++|++|+|++.|+|+|++++++.|++++..|..
T Consensus 527 -~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 527 -KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFG 580 (587)
T ss_dssp -TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC-
T ss_pred -CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHhc
Confidence 489999999999999889999999999999999999999999999999988754
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.8e-73 Score=632.81 Aligned_cols=367 Identities=38% Similarity=0.534 Sum_probs=335.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+.....+...+...++..+..++++|+|++++..|.+|+|.+++++.+...
T Consensus 285 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~ 364 (1321)
T 4f4c_A 285 IRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMM 364 (1321)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 68999999999999999999999888888777777776666667767777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-cccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|+..+...+..++.+..+++|++++++.+|+....... ....+..+.|+++||+|+|++.++.++|+|+||+|++|
T Consensus 365 ~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G 444 (1321)
T 4f4c_A 365 GSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAG 444 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCC
Confidence 99999999999999999999999999999988764332221 21223345799999999998765678999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++|||||||||||||+++|+|+|+|++|+|.+||+|+++++..++|++||||+|+|++|++||+|||.||.+ +.++++
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~-~~~~~~ 523 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE-GITREE 523 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-TCCHHH
T ss_pred cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc-cchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999954 678999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.++++++++.+|.|++|.+++ .+|||||||||+||||++++|+|||||||||+||+++++.+.+.|.++.
T Consensus 524 v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-- 601 (1321)
T 4f4c_A 524 MVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-- 601 (1321)
T ss_dssp HHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--
T ss_pred HHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999985 5899999999999999999999999999999999999999999999885
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+|+|+|+|||++++++.||+|++|++|+|++.|+|+||+++++.|++++..|.
T Consensus 602 --~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 602 --KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp --TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHH
T ss_pred --CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhh
Confidence 48999999999999999999999999999999999999999999999998764
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.3e-73 Score=585.94 Aligned_cols=365 Identities=37% Similarity=0.562 Sum_probs=328.5
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+..+........+..+..++++++|++++..|.+|+|.+++++.|...
T Consensus 210 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~ 289 (578)
T 4a82_A 210 ISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLEL 289 (578)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 58999999999999999999999888888877776676666666667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+.++..+++|+.++++.+++..........+...+.|+++||+|+|++. ++++|+|+||++++||
T Consensus 290 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~ 368 (578)
T 4a82_A 290 LFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGE 368 (578)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCC
Confidence 999999999999999999999999999999877643221111112233569999999999753 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++||||||+|.+|++||+||+.++.+ ..+++++
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~ 447 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEV 447 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHH
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854 4567888
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++.++++.+|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.++++.
T Consensus 448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 524 (578)
T 4a82_A 448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--- 524 (578)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---
Confidence 89999999999999999999999984 6899999999999999999999999999999999999999999999884
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++.|++++..|
T Consensus 525 -~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~q 576 (578)
T 4a82_A 525 -KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576 (578)
T ss_dssp -TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTTT
T ss_pred -CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhh
Confidence 4789999999999998899999999999999999999999999999998765
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.6e-71 Score=575.33 Aligned_cols=365 Identities=35% Similarity=0.528 Sum_probs=327.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+...........+..+..++++++|++++..|.+|+|.+++++.+...
T Consensus 214 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~ 293 (582)
T 3b5x_A 214 HKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFG 293 (582)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999998888887777776666667667777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+++|+.++++.+++... ...+.++..+.|+++||+|+|+++ ++++|+|+||++++||
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~ 370 (582)
T 3b5x_A 294 LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGK 370 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCC
Confidence 9999999999999999999999999999988765321 111112223469999999999753 2469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++||||||+|.+|++|++||+.++..+..+++++
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHH
Confidence 99999999999999999999999999999999999998888888999999999999999999999999975234567788
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++.
T Consensus 451 ~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 527 (582)
T 3b5x_A 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--- 527 (582)
T ss_pred HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---
Confidence 89999999999999999999999874 6899999999999999999999999999999999999999999999884
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+|+|+|+||||++.++.||+|++|++|++++.|++++++++++.|++++..|.
T Consensus 528 -~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 528 -KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred -CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence 37899999999999988999999999999999999999999999999998774
No 5
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.9e-73 Score=632.75 Aligned_cols=369 Identities=37% Similarity=0.520 Sum_probs=312.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHH--HHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQ--LTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~--l~~~~~~~ 79 (377)
+++||+|+.|+.+.++|.+..+...+...+.....+....+...+..+..++++++|++++..+..+.+. +++++.+.
T Consensus 945 i~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~ 1024 (1321)
T 4f4c_A 945 VRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAI 1024 (1321)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHH
Confidence 5899999999999999999998888877766666666555555555666778889999999888766554 34344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeC
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEA 159 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~ 159 (377)
.....++..+...+..+..+..+++|++++++.+++..........++..+.|+++||+|+|+++++.+||+|+||+|+|
T Consensus 1025 ~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1025 TISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEP 1104 (1321)
T ss_dssp HTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECC
Confidence 44445677777888899999999999999999887644322222233445679999999999876556799999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC-CCCCCH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC-PKDVKN 238 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~ 238 (377)
||++|||||||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|+||||+|.||++||+|||.||. +.+.++
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd 1184 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM 1184 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCH
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 346789
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 316 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~ 316 (377)
++++++++.+++++++..+|.|++|.+++ .+||||||||+||||||+++|+|||||||||+||+++++.|++.|+++.
T Consensus 1185 ~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999984 6899999999999999999999999999999999999999999998763
Q ss_pred ccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 317 NDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 317 ~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+|+|+|+|||+++++..||||+||++|+|+|.|+|+||+++++.|++|++.|..
T Consensus 1265 ----~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1265 ----EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp ----SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred ----CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999999998764
No 6
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.1e-71 Score=576.00 Aligned_cols=365 Identities=35% Similarity=0.539 Sum_probs=327.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+...+......++..+..++++++|++++..|.+|+|.+++++.|...
T Consensus 214 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 293 (582)
T 3b60_A 214 HKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIA 293 (582)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999988888877777777666666666777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+++|+.++++.+++... .....++..+.|+++||+|+|+++ ++++|+|+||+|++||
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~ 370 (582)
T 3b60_A 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGK 370 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC--CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC--CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCC
Confidence 9999999999999999999999999999998765321 111112223469999999999742 1469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++||||||+|.+|++|++||+.++..+..+++++
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 450 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999888888899999999999999999999999975234567888
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.++++.
T Consensus 451 ~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 527 (582)
T 3b60_A 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--- 527 (582)
T ss_dssp HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999984 6899999999999999999999999999999999999999999999885
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+|+|+|+||||++.++.||+|++|++|++++.|++++++++++.|++++..|.
T Consensus 528 -~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 528 -KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp -TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHTC
T ss_pred -CCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhc
Confidence 37899999999999988999999999999999999999998889999998774
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.3e-71 Score=575.91 Aligned_cols=369 Identities=40% Similarity=0.633 Sum_probs=313.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+...........+..+..++++++|++++..|.+|+|.+++++.|...
T Consensus 211 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 290 (595)
T 2yl4_A 211 VRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFW 290 (595)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999888887777766666666666666666778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc-EEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGH-VQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|+..+...+..++.+..+++|+.++++.+++..........++..+. |+++||+|+|+++++.++|+|+||++++|
T Consensus 291 ~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G 370 (595)
T 2yl4_A 291 VGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSG 370 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCC
Confidence 99999999999999999999999999999987653221111111122346 99999999997532246999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC--CCCH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKN 238 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~--~~~~ 238 (377)
|++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++||||||+|.+|+.|++||+.++.+. ..++
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 450 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTA 450 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCH
Confidence 99999999999999999999999999999999999999988888889999999999999999999999997542 2567
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 316 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~ 316 (377)
+++.++++.++++++++++|.|+++.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.++++.
T Consensus 451 ~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 530 (595)
T 2yl4_A 451 EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 530 (595)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999874 6899999999999999999999999999999999999999999999985
Q ss_pred ccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHHHhh
Q 017091 317 NDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQTE 374 (377)
Q Consensus 317 ~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 374 (377)
+++|+|+||||++.++.||+|++|++|++++.|++++++++ ++.|++++..|..
T Consensus 531 ----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 531 ----DGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp ----TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C-----------
T ss_pred ----cCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhhc
Confidence 36899999999999988999999999999999999999884 7789998876643
No 8
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5e-72 Score=582.07 Aligned_cols=365 Identities=32% Similarity=0.553 Sum_probs=328.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+..+........+..+..++++++|++++..|.+++|.+++++.|...
T Consensus 226 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~ 305 (598)
T 3qf4_B 226 LTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQ 305 (598)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTS
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999888877777666666666666666777788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+++|+.++++.+++...+ .....++..+.|+++||+|+|+++ +++|+|+||++++||
T Consensus 306 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~isl~i~~G~ 382 (598)
T 3qf4_B 306 FTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQ 382 (598)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCCSCCCCEEEEEEECCSSSS--SCSCCSEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCCCeEEEEEEEEECCCC--CccccceEEEEcCCC
Confidence 99999999999999999999999999999987764321 111122234579999999999753 469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++||||||+|.+|++||+||+.++.+ ..+++++
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~ 461 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEI 461 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHH
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853 4566778
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++.+|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.++++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 538 (598)
T 3qf4_B 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--- 538 (598)
T ss_dssp HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc---
Confidence 88999999999999999999999874 6899999999999999999999999999999999999999999999884
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+|+|+|+||||++.++.||+|++|++|++++.|+|++++++++.|++++..|..
T Consensus 539 -~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 539 -EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYG 592 (598)
T ss_dssp -TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHG
T ss_pred -CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhh
Confidence 378999999999999889999999999999999999999999999999988754
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.4e-68 Score=591.45 Aligned_cols=367 Identities=42% Similarity=0.615 Sum_probs=327.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+.....+...+...++..+..++++|+|++++..|.+++|.+++++.+...
T Consensus 257 i~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~ 336 (1284)
T 3g5u_A 257 IRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336 (1284)
T ss_dssp HHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999888887777666666666666667777888999999999999999999988888778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|+..+...+..++.+..+++|++++++.+|+.... ..+...+...+.|+++||+|+|+++++.++|+|+||+|++|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 416 (1284)
T 3g5u_A 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCC
Confidence 88899999999999999999999999999987754321 11111222345799999999998643457999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++||+||||||||||+++|+|+++|++|+|.+||+++..++..++|++||||||+|.+|++||+|||.++.+ ..++++
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-~~~~~~ 495 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DVTMDE 495 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS-SCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999853 567888
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
++++++.++++++++.+|.|++|.++. .+|||||||||+|||||+++|+|||||||||+||+++++.+.+.++.+.
T Consensus 496 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-- 573 (1284)
T 3g5u_A 496 IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-- 573 (1284)
T ss_dssp HHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--
Confidence 999999999999999999999999884 6899999999999999999999999999999999999999999998774
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+|+|+|+||||++++..||+|++|++|+|++.|+|+++++.++.|.+++..|.
T Consensus 574 --~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 574 --EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626 (1284)
T ss_dssp --TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC
T ss_pred --CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhh
Confidence 48899999999999988999999999999999999999999999998886653
No 10
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.4e-66 Score=497.53 Aligned_cols=275 Identities=40% Similarity=0.595 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCc
Q 017091 93 LSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 172 (377)
Q Consensus 93 ~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsG 172 (377)
...++.+..+++|++++++.+++..........+...+.|+++||+|+|++. .++|+||||+|++||++||+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCch
Confidence 4466778889999999998765432211111112223469999999999743 46999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH
Q 017091 173 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 252 (377)
Q Consensus 173 KSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~ 252 (377)
||||+|+|+|+++|++|+|.++|+++..++...+|++||||||++.+|++||+|||.++.. ....++++++++.+++.+
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcHH
Confidence 9999999999999999999999999999999899999999999999999999999999853 456778889999999999
Q ss_pred HHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 253 FILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 253 ~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
+++.+|.|+++.++. .+|||||||||+|||||+++|+|||||||||+||+.++..+++.|+++. +++|+|+|||
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH 247 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC----ANRTTIVVAH 247 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH----TTSEEEEECC
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEEc
Confidence 999999999999874 5899999999999999999999999999999999999999999999885 3689999999
Q ss_pred CchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 331 RLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 331 ~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
|++.+..||+|++|++|+|++.|+++++++.++.|+++|..|..
T Consensus 248 ~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 248 RLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291 (306)
T ss_dssp SHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred ChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHh
Confidence 99999889999999999999999999999999999999987653
No 11
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.1e-66 Score=574.95 Aligned_cols=369 Identities=38% Similarity=0.556 Sum_probs=325.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.++|.+..+...+...+.....+....+...+..+..++++|+|++++..|.++++.++++..+...
T Consensus 900 i~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~ 979 (1284)
T 3g5u_A 900 FRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVF 979 (1284)
T ss_dssp CTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 57999999999999999999988888777777776666666666667777888999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
...|+..+...+..+..+..+++|+.++++.+|+..... .+...+...+.|+++||+|+|+++++.++|+|+||+|++|
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~G 1059 (1284)
T 3g5u_A 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKG 1059 (1284)
T ss_dssp HHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCC
Confidence 778888887777788899999999999999877643211 1111122345799999999998643347999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNE 239 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~ 239 (377)
|++||+||||||||||+++|+|+++|++|+|.+||+++...+...+|++|+||||+|.+|++||+|||.++.+. ..+++
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~ 1139 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE 1139 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998542 35678
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
++.++++.++++++++.+|.|++|.+++ .+|||||||||+|||||+++|+|||||||||+||+.+++.+.+.|++..
T Consensus 1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~- 1218 (1284)
T 3g5u_A 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR- 1218 (1284)
T ss_dssp HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-
Confidence 8889999999999999999999999984 5899999999999999999999999999999999999999999998763
Q ss_pred cCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 318 DCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 318 ~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+|+|+|+||||++++..||||++|++|+|++.|+|++++++++.|++++..|..
T Consensus 1219 ---~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1219 ---EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272 (1284)
T ss_dssp ---SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC-
T ss_pred ---CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhh
Confidence 489999999999999889999999999999999999999999999999988754
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.4e-59 Score=434.69 Aligned_cols=236 Identities=48% Similarity=0.748 Sum_probs=213.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...++++|
T Consensus 7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 58999999999421 23699999999999999999999999999999999999999999999999999887777778889
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p 288 (377)
|||||++.+|+.||+||+.++.+ ....+++.++++.+++.++++.+|.|+++.++. .+|||||||||+|||||+++|
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999998899999998742 345667778888999999999999899887763 689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 367 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 367 (377)
++|||||||++||+.++..+.+.|+++. +|+|||+||||++.+..||+|++|++|++++.|++++++.. .+.|.+
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~----~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 240 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHH
Confidence 9999999999999999999999999984 37899999999998877999999999999999999999887 778888
Q ss_pred HHHHH
Q 017091 368 LVKRQ 372 (377)
Q Consensus 368 ~~~~~ 372 (377)
++..+
T Consensus 241 l~~~~ 245 (247)
T 2ff7_A 241 LYQLQ 245 (247)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88755
No 13
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.2e-58 Score=436.49 Aligned_cols=241 Identities=38% Similarity=0.667 Sum_probs=210.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.|+++||+|+|++....++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...++++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 36999999999975212469999999999999999999999999999999999999999999999999977776777888
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 287 (377)
|+||||++.+|+.||+||+.++.......+++..+++..++.++++.+|.++++..+ ..+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998899999998743221214455666677888999999888877665 468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
|++||||||||+||+.++..+.+.|+++.++ .|+|||+||||++.+..||+|++|++|++++.|++++++.....|.+
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 252 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEW--ASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTT--TTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHH
Confidence 9999999999999999999999999988532 48899999999999877999999999999999999999888788888
Q ss_pred HHHHH
Q 017091 368 LVKRQ 372 (377)
Q Consensus 368 ~~~~~ 372 (377)
++..+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 87665
No 14
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7e-58 Score=428.97 Aligned_cols=238 Identities=39% Similarity=0.659 Sum_probs=212.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||+|+|++...+++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753224699999999999999999999999999999999999987 8999999999987777778889
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 287 (377)
|+||||++.+|+.||+||+.++.. ....+++.++++.+++.++++.+|.++++.++ ..+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 999999999998899999998743 33456677788888999999889988887665 468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
|++|||||||++||+.++..+.+.|++++ +++|||+||||++.+..||+|++|++|++++.|++++++...+.|.+
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~----~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 249 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLR----KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAE 249 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 99999999999999999999999999884 37899999999998877999999999999999999999887778888
Q ss_pred HHHHHh
Q 017091 368 LVKRQT 373 (377)
Q Consensus 368 ~~~~~~ 373 (377)
++..+.
T Consensus 250 ~~~~~~ 255 (260)
T 2ghi_A 250 MWNMQS 255 (260)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 887664
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-59 Score=432.96 Aligned_cols=235 Identities=42% Similarity=0.670 Sum_probs=210.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+|+|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+|++|+
T Consensus 2 l~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 7899999999532 46999999999999999999999999999999999999999999999999997766556678899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
||||++.+|+.|++||+.++.......+++.++++.+++.++++++|.|+++..+ ..+|||||||||+|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999998899999998732234566777888888888888999988888766 36899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+|||||||++||+.+++.+.+.|+++. +|+|||+||||++.+..||+|++|++|++++.|++++++.....|.+++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999999999885 3789999999999887799999999999999999999988877888887
Q ss_pred HHH
Q 017091 370 KRQ 372 (377)
Q Consensus 370 ~~~ 372 (377)
..+
T Consensus 236 ~~~ 238 (243)
T 1mv5_A 236 SEQ 238 (243)
T ss_dssp HCC
T ss_pred Hhh
Confidence 654
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.2e-57 Score=443.51 Aligned_cols=222 Identities=30% Similarity=0.459 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---
Q 017091 130 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW--- 205 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~--- 205 (377)
.+|+++||+|+|+++. ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996431 246999999999999999999999999999999999999999999999999998887654
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 206 LREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
+|++||||||++.+| ..||+||+.++.. ..... +++.++++.+++.++.++.| .+|||||||||+
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqkQRVa 173 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVA 173 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---------TTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 467899999999988 5799999987521 11122 23444555555544444433 689999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||||+.+|++||||||||+||+.++..+++.|++++++ .|.|||+||||++.+.. ||||++|++|++++.|+++++
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~--~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999753 48999999999999975 999999999999999999999
Q ss_pred hhcC
Q 017091 359 LHKG 362 (377)
Q Consensus 359 ~~~~ 362 (377)
+.+.
T Consensus 252 ~~~p 255 (366)
T 3tui_C 252 FSHP 255 (366)
T ss_dssp HSSC
T ss_pred HhCC
Confidence 8753
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.4e-57 Score=427.02 Aligned_cols=223 Identities=28% Similarity=0.469 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~ 208 (377)
.|+++||+|+|++. .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 59999999999753 359999999999999999999999999999999999999999999999999852 22345678
Q ss_pred ceEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~--~l~~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
+||||||+| .+|..||+||+.++.. .....+ ++.++++.+++.++.++. ..+|||||||||+||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP---------THCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB---------GGGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------cccCCHHHHHHHHHH
Confidence 899999998 4678899999987531 112222 233344444443322222 367999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++||||||||+||+.++..+++.|++++++ .|+|||+||||++.+.. ||||++|++|++++.|++++++.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE--LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998632 38899999999999975 99999999999999999999987
Q ss_pred cCHHHH
Q 017091 361 KGRLYA 366 (377)
Q Consensus 361 ~~~~~~ 366 (377)
....+.
T Consensus 234 ~~~~~~ 239 (275)
T 3gfo_A 234 EKEVIR 239 (275)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 654443
No 18
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.9e-57 Score=417.24 Aligned_cols=221 Identities=32% Similarity=0.458 Sum_probs=176.6
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH----
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 206 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~---- 206 (377)
|+++||+|+|+++. ..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 79999999997432 1359999999999999999999999999999999999999999999999999988876543
Q ss_pred hcceEEEccCCcCcc-ccHHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHH
Q 017091 207 REKIGFVGQEPQLLQ-MDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~i 280 (377)
+++||||||++.+|+ .||+||+.++.. .....++..+ .+.+.++.+...... ...+.+|||||||||+|
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHHCCCChhhhhCChhhCCHHHHHHHHH
Confidence 456999999999884 699999986421 1112221111 122233333221111 12236799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|++++++ .|+|||+||||++.+..||+|++|++|++++.++++++.
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 99999999999999999999999999999999998642 388999999999976669999999999999999887753
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.4e-56 Score=418.71 Aligned_cols=217 Identities=27% Similarity=0.424 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999975 3699999999999999999999999999999999999999999999999999988888888889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+|++|++.++ ..||+||+.++.... ...+++.++++.+++.++.++ ...+|||||||||+|||||++
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR---------DYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS---------BGGGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC---------CcccCCHHHHHHHHHHHHHhc
Confidence 9999999874 789999998864211 112334444444443322222 225799999999999999999
Q ss_pred ------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 287 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 287 ------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
+|++|||||||||||+.++..+.+.|++++++ .++|||+||||++.+.. ||||++|++|++++.|++++++
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~--~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ--EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH--SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999998653 36899999999999875 9999999999999999999997
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
+.
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 20
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.3e-56 Score=431.69 Aligned_cols=218 Identities=28% Similarity=0.494 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC--CHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--~~~~~r~ 208 (377)
.|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 5899999999974 3699999999999999999999999999999999999999999999999998321 1223467
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+||||||++.+| .+||+||+.|+.... .. .+++.++++.+++.++.++.| .+|||||||||+|||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr 151 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR 151 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 899999999998 589999999975321 11 233455566666555544444 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||||+||+..+..+++.+.++.++ .|.|+|+||||++++.. ||||++|++|+|++.|++++++.+
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~--~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA--NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--TTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999888877543 48999999999999865 999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 4
No 21
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.8e-55 Score=407.24 Aligned_cols=227 Identities=27% Similarity=0.472 Sum_probs=194.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 58999999999742 24699999999999999999999999999999999999999999999998 39
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+||||++.++..|++||+.++... ..+...++.+..++.+.+..+|.++++..+ +.+|||||||||+|||||+.+|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL--EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC--CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc--CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999988889999999987432 223344556666666777777777666554 4689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
++|||||||++||+.++..+.+.|.+..+. .+|+|||+||||++.+..||+|++|++|++++.|+++++++..+.|.++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 225 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHH
Confidence 999999999999999999999988532111 2478999999999988779999999999999999999999888889888
Q ss_pred HHHHhh
Q 017091 369 VKRQTE 374 (377)
Q Consensus 369 ~~~~~~ 374 (377)
+..|..
T Consensus 226 ~~~~~~ 231 (237)
T 2cbz_A 226 LRTYAS 231 (237)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 887654
No 22
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5e-56 Score=434.68 Aligned_cols=217 Identities=29% Similarity=0.474 Sum_probs=186.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. ++.
T Consensus 2 ~~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ 76 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERG 76 (381)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSC
T ss_pred CEEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCC
Confidence 35999999999974 3699999999999999999999999999999999999999999999999999877654 467
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||+|||.|+.. ..... +++.++++.+++.++.++.| .+|||||||||+||||
T Consensus 77 ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---------~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRT 147 (381)
T ss_dssp EEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---------GGSCHHHHHHHHHHHH
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hHCCHHHHHHHHHHHH
Confidence 99999999998 5799999988632 11222 23444555555544443333 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+..+..+.+.|++++++ .|.|+|+||||++++.. ||||++|++|++++.|++++++...
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 99999999999999999999999999999998653 48999999999999865 9999999999999999999998753
No 23
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-55 Score=433.26 Aligned_cols=226 Identities=25% Similarity=0.426 Sum_probs=205.4
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.+.|+++||+|+|+++ ..++|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+...+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3569999999999632 2479999999999999999999999999999999999998 9999999999999888888888
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 017091 209 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 209 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~ 286 (377)
.||||||++.+|++||+||+.+.. ....+++.++++.+++.++++++|.++++.++. .+|||||||||+|||||++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998542 345677888999999999999999888887764 5699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+|++||||||||+||+.++..+++.|+++. .+.|+|+||||++.+..||||++|++|+|++.|++++++++.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~----~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAF----ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTT----TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999998763 478999999999888779999999999999999999998763
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-55 Score=413.71 Aligned_cols=217 Identities=34% Similarity=0.493 Sum_probs=181.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~ 208 (377)
+|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ......+++
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999964 36999999999999999999999999999999999999999999999999985 233445677
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCC--CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGC--PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~--~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
+||||||++.+| ..||+||+.++. ...... +++.++++.+++.++.++. ..+|||||||||+||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY---------PDSLSGGQAQRVAIA 171 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC---------hhhCCHHHHHHHHHH
Confidence 899999999888 469999998742 111122 1233334444433322222 367999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|+++++++
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN---EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999864 37899999999999875 99999999999999999999986
Q ss_pred cC
Q 017091 361 KG 362 (377)
Q Consensus 361 ~~ 362 (377)
..
T Consensus 249 ~~ 250 (263)
T 2olj_A 249 RP 250 (263)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-55 Score=406.15 Aligned_cols=216 Identities=22% Similarity=0.393 Sum_probs=180.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~ 209 (377)
+|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+ +++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4999999999974 369999999999999999999999999999999999999999999999999987766544 456
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCCCH----HHHHHHHHHcC-HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN----EDIEWAAKQAY-VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~----~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
|||+||++.+|. .|++||+.++....... +.+.+.++..+ +.++.++ ...+|||||||||+||||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ---------LGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTS---------BSSSSCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcC---------ChhhCCHHHHHHHHHHHH
Confidence 999999998885 69999998863111111 12223333331 3322222 136799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999999864 37899999999998764 999999999999999999998764
No 26
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.3e-55 Score=409.84 Aligned_cols=217 Identities=30% Similarity=0.459 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---------- 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~---------- 200 (377)
+|+++||+++|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999964 369999999999999999999999999999999999999999999999999861
Q ss_pred CCH---HHHhcceEEEccCCcCc-cccHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHHH-HHhCCCCcccccCCCC
Q 017091 201 LDI---RWLREKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 269 (377)
Q Consensus 201 ~~~---~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~--~~~~~----~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 269 (377)
.+. ..++++||||||++.+| ..||+||+.++. ..... .+++.++++.+++.++ .++.| .+
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence 333 24567899999999888 569999998741 11112 1234455566665555 44433 67
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++++ +|+|||+||||++.+.. ||+|++|++|+
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 230 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK 230 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999864 38899999999999875 99999999999
Q ss_pred EEEEcChHHHhhcC
Q 017091 349 IIEVGNHAELLHKG 362 (377)
Q Consensus 349 i~~~g~~~~l~~~~ 362 (377)
+++.|+++++++..
T Consensus 231 i~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 231 IEEEGDPEQVFGNP 244 (262)
T ss_dssp EEEEECHHHHHHSC
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999998653
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-55 Score=409.26 Aligned_cols=217 Identities=26% Similarity=0.391 Sum_probs=183.0
Q ss_pred ccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh
Q 017091 128 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 128 ~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
.|+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++
T Consensus 12 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~ 87 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR 87 (256)
T ss_dssp --CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHH
T ss_pred cCCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHh
Confidence 5678999999999964 369999999999999999999999999999999999999999999999999875 445667
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
++|||+||++.+| ..|++||+.++.. ..... +++.++++.+++.++.++. ..+|||||||||+||
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR---------VSTYSKGMVRKLLIA 158 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSB---------GGGCCHHHHHHHHHH
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCC---------hhhCCHHHHHHHHHH
Confidence 8899999999887 4699999987421 01111 2333444544444333322 267999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999864 37899999999999976 99999999999999999999864
No 28
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.7e-54 Score=398.68 Aligned_cols=219 Identities=25% Similarity=0.427 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|
T Consensus 6 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 59999999999632 24699999999999999999999999999999999999999999999998 39
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+|+||++.+|+.|++||+.++.. .......+.++..++.++++.+|.+.++.++ ..+|||||||||+|||||+++|
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999998899999998742 2233445566677888888888877776655 3689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
++|||||||++||+.+++.+.+.+ .++. .++|||++|||++.+..||++++|++|++++.|+++++.+....|.+
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 225 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCT----TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhh----CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 999999999999999999998863 4442 37899999999998877999999999999999999999876555655
Q ss_pred HH
Q 017091 368 LV 369 (377)
Q Consensus 368 ~~ 369 (377)
++
T Consensus 226 ~~ 227 (229)
T 2pze_A 226 KL 227 (229)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 29
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.1e-55 Score=408.96 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
+|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..+++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5999999999964 3699999999999999999999999999999999999999999999999999766543 34678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC---C-----------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK---D-----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~---~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
||||||++.+| ..||+||+.++... . ....+. ...+.++++.+...........+|||||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFLKLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence 99999999888 57999999886321 1 111111 1112344444432111111236799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||||+|||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|
T Consensus 159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999864 38899999999999865 9999999999999999
Q ss_pred ChHH
Q 017091 354 NHAE 357 (377)
Q Consensus 354 ~~~~ 357 (377)
++++
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 9998
No 30
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.6e-55 Score=424.46 Aligned_cols=216 Identities=27% Similarity=0.498 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 5899999999964 3699999999999999999999999999999999999999999999999999876543 5679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|||||++.+| .+||+||+.|+.... .. .+++.++++.+++.++.++.| .+|||||||||+|||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999998 579999999874321 11 123445555555554444443 67999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||||++|++|++++.|++++++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999998643 37899999999999865 9999999999999999999998754
No 31
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.7e-55 Score=401.87 Aligned_cols=213 Identities=26% Similarity=0.405 Sum_probs=174.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 207 (377)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... ++
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999974 36999999999999999999999999999999999999999999999999997766432 33
Q ss_pred -cceEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 208 -EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 208 -~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
++|+||||++.+| ..|++||+.++.. ......+.. ..+.+.++.+...........+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-----ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 6799999999888 5799999987421 111111111 1123334443322111222367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
+.+|++|||||||++||+.++..+.+.|+++++ +|+|||+||||++.+..||++++|++|++++.|+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINE---GGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999864 3789999999999886699999999999999885
No 32
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.5e-55 Score=425.41 Aligned_cols=216 Identities=33% Similarity=0.514 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 5899999999964 3699999999999999999999999999999999999999999999999999876543 4679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|||||++.+| .+||+||+.|+.. ..... +++.++++.+++.++.++. +.+|||||||||+|||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY---------PWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC---------GGGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCC---------hhhCCHHHHHHHHHHHHH
Confidence 9999999998 5799999988631 11122 2233344444443333222 367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+.+|++||||||||+||+..+..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|+|++.|++++++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999998643 37899999999999865 9999999999999999999998754
No 33
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.9e-54 Score=423.55 Aligned_cols=218 Identities=30% Similarity=0.506 Sum_probs=181.8
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
|..|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++
T Consensus 9 M~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r 83 (372)
T 1v43_A 9 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DR 83 (372)
T ss_dssp CCCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GG
T ss_pred eeeEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hC
Confidence 446999999999964 3699999999999999999999999999999999999999999999999999876543 46
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+||||||++.+| .+||+||+.|+... .... +++.++++.+++.++.++.| .+|||||||||+|||
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---------TTCCSSCHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHH
Confidence 799999999988 57999999997532 1222 23344555555544444433 689999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||||+||+..+..+.+.|++++++ .|.|+|+||||++++.. ||||++|++|++++.|++++++.+
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998643 37899999999999864 999999999999999999999875
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 233 p 233 (372)
T 1v43_A 233 P 233 (372)
T ss_dssp C
T ss_pred c
Confidence 4
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.4e-54 Score=421.71 Aligned_cols=216 Identities=28% Similarity=0.504 Sum_probs=184.5
Q ss_pred cEEEEEEEEEc-CCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 131 HVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y-~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
.|+++||+|+| ++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++
T Consensus 14 ~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 14 TIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred eEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 59999999999 53 369999999999999999999999999999999999999999999999999976553 3678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||+||+.|+.. .... .+++.++++.+++.++.++.| .+|||||||||+||||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRvalArA 159 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---------HELSGGQQQRVALARA 159 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999999998 5799999988531 1112 223444555555544444333 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||||++|++|+|++.|++++++++.
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998643 37899999999999865 9999999999999999999998753
No 35
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.1e-55 Score=424.12 Aligned_cols=218 Identities=30% Similarity=0.476 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCCC--ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC---HHH
Q 017091 131 HVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~--vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~ 205 (377)
+|+++||+|+|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 5899999999964 36 999999999999999999999999999999999999999999999999986411 122
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 206 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
.+++||||||++.+| .+||+||+.|+... .... +++.++++.+++.++.++.| .+|||||||||+
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSGGq~QRva 150 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA 150 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 467899999999998 57999999987432 1122 23344455555544433333 679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||||+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||||++|++|++++.|+++++
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998643 37899999999999865 999999999999999999999
Q ss_pred hhcC
Q 017091 359 LHKG 362 (377)
Q Consensus 359 ~~~~ 362 (377)
+++.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8754
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-54 Score=405.01 Aligned_cols=216 Identities=30% Similarity=0.488 Sum_probs=185.3
Q ss_pred cEEEEEEEEEcCCCCC--CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
+|+++||+|+|+.+.. +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... .+++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 4899999999962111 3699999999999999999999999999999999999999999999999998532 5677
Q ss_pred ceEEEccCC--cCccccHHHHHhcCCCC----CCCHHHHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 209 KIGFVGQEP--QLLQMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 209 ~i~~v~Q~~--~l~~~tv~eni~~~~~~----~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+||||||++ .++..|++||+.++... ....+++.++++.+++. ++.++.| .+|||||||||+|
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~l 149 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAI 149 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHH
Confidence 899999996 45678999999886321 12234566677777776 6555544 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||+||||++.+.. ||++++|++|++++.|++++++
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT---LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999864 37899999999999875 9999999999999999999987
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 227 ~~ 228 (266)
T 2yz2_A 227 EK 228 (266)
T ss_dssp HH
T ss_pred cC
Confidence 54
No 37
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-54 Score=410.71 Aligned_cols=216 Identities=25% Similarity=0.388 Sum_probs=179.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~ 208 (377)
.|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+++
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999974 36999999999999999999999999999999999999999999999999987 666667788
Q ss_pred ceEEEccCCcC-cc--ccHHHHHhcCCCC------CCCH---HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 209 KIGFVGQEPQL-LQ--MDIKSNIMYGCPK------DVKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 209 ~i~~v~Q~~~l-~~--~tv~eni~~~~~~------~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
+||||||++.+ |. .||+||+.++... .... +++.++++.+++.++.++ ...+|||||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGqkq 168 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ---------YIGYLSTGEKQ 168 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHH
Confidence 89999999864 43 4999999986321 0111 122233333333222211 23679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEE--EEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV--IVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tv--i~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||+|||||+.+|++|||||||++||+.+++.+.+.|++++++ |+|| |+||||++.+.. ||+|++|++|++++.|
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~---g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS---YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH---CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC---CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999998642 7899 999999999864 9999999999999999
Q ss_pred ChHHHhhc
Q 017091 354 NHAELLHK 361 (377)
Q Consensus 354 ~~~~l~~~ 361 (377)
+++++.+.
T Consensus 246 ~~~~~~~~ 253 (279)
T 2ihy_A 246 AVEDILTS 253 (279)
T ss_dssp EHHHHCSH
T ss_pred CHHHHhcc
Confidence 99998754
No 38
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.7e-54 Score=424.33 Aligned_cols=216 Identities=30% Similarity=0.454 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC------CCHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~------~~~~ 204 (377)
+|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .++
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 5899999999964 369999999999999999999999999999999999999999999999999865 443
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 205 WLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
.+++||||||++.+| .+||+||+.|+.. ..... +++.++++.+++.++.++.| .+|||||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRv 148 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV 148 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---------ccCCHHHHHHH
Confidence 256799999999998 5899999988531 11122 23444555555544444333 67999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++||||||||+||+..+..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998643 37899999999999865 99999999999999999999
Q ss_pred HhhcC
Q 017091 358 LLHKG 362 (377)
Q Consensus 358 l~~~~ 362 (377)
++++.
T Consensus 227 l~~~p 231 (372)
T 1g29_1 227 VYDKP 231 (372)
T ss_dssp HHHSC
T ss_pred HHhCc
Confidence 98753
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.8e-54 Score=418.19 Aligned_cols=214 Identities=33% Similarity=0.552 Sum_probs=184.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+|+|++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999963 4 9999999999999999999999999999999999999999999999999976544 356799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||||++.+| .+||+||+.|+... ....+++.++++..++.++.++.| .+|||||||||+|||||+.+|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHcCC
Confidence 999999998 57999999885310 111244555666665544444433 679999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
++||||||||+||+.+++.+.+.|++++++ .|.|+|+||||++++.. ||||++|++|++++.|++++++++.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998653 48899999999998865 9999999999999999999998753
No 40
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-54 Score=398.15 Aligned_cols=215 Identities=27% Similarity=0.419 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..+++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 789999999952 59999999999 999999999999999999999999999999999999986533 2467899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
||||++.+| ..|++||+.++.... .... . ...+.+.++.+...........+|||||||||+|||||+.+|++
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~-~~~~--~---~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 147 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNV-ERVE--R---DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTS-CHHH--H---HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHc-CCch--H---HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999999888 469999999864211 1111 0 11123444444322111222367999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|||||||++||+.+++.+.+.|++++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++++..
T Consensus 148 llLDEPts~LD~~~~~~~~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 148 LLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999998542 37899999999998865 9999999999999999999997654
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.6e-53 Score=396.73 Aligned_cols=210 Identities=21% Similarity=0.325 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+|+ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++...+...++++|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4899999986 3899999999999999999999999999999999999999 9999999999777777778889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
+|+||++.+| ..|++||+.++.......+++.++++..++.++.++. ..+|||||||||+|||||+.+|+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---------TNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSB---------GGGCCHHHHHHHHHHHHHHHHCT
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999887 5799999998632222244555666666654443332 25799999999999999999999
Q ss_pred -------EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHhh
Q 017091 290 -------ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 290 -------illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+|||||||++||+.+++.+.+.|+++.+ +|+|||++|||++.+. .||++++|++|++++.|+++++.+
T Consensus 147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999864 3789999999999985 599999999999999999999875
No 42
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.7e-53 Score=397.02 Aligned_cols=212 Identities=24% Similarity=0.329 Sum_probs=169.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHH-h
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r 207 (377)
+|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 5899999999964 3699999999999999999999999999999999999 89999999999999987766544 4
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC----CCCCH----HHHHHHHHHcCH-HHHHHhCCCCcccccCCCC-CChHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCP----KDVKN----EDIEWAAKQAYV-HEFILSLPCGYETLVDDDL-LSGGQKQ 276 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~----~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~-LSgGq~Q 276 (377)
..++|+||++.+| ..|++||+.++.. ..... +++.++++..++ .++.+ ....+ |||||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS---------RYLNEGFSGGEKK 150 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG---------SBTTCC----HHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc---------CCcccCCCHHHHH
Confidence 5699999999988 4799999976421 00111 122223333332 11111 12356 9999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEcC
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g~ 354 (377)
||+|||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|+
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG---PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS---TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999843 48899999999999875 59999999999999999
Q ss_pred hHH
Q 017091 355 HAE 357 (377)
Q Consensus 355 ~~~ 357 (377)
++.
T Consensus 228 ~~~ 230 (250)
T 2d2e_A 228 PEL 230 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.2e-52 Score=394.81 Aligned_cols=219 Identities=25% Similarity=0.311 Sum_probs=176.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHH-
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL- 206 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~- 206 (377)
.+|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+
T Consensus 19 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 19 HMLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp -CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 35999999999964 3699999999999999999999999999999999999 57999999999999877665544
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCC--------CCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCC-CCChHHH
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGC--------PKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD-LLSGGQK 275 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~-~LSgGq~ 275 (377)
+..|+|+||++.+| ..|+.||+.++. ......++.. ..+.++++.+.... ....... +||||||
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 44699999999888 579999986531 0011121111 12334455443210 1111223 5999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEc
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g 353 (377)
|||+|||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g 247 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC---SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999998843 48899999999999864 8999999999999999
Q ss_pred ChHHHh
Q 017091 354 NHAELL 359 (377)
Q Consensus 354 ~~~~l~ 359 (377)
+++++.
T Consensus 248 ~~~~~~ 253 (267)
T 2zu0_C 248 DFTLVK 253 (267)
T ss_dssp CTTHHH
T ss_pred CHHHHh
Confidence 998764
No 44
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.6e-52 Score=387.91 Aligned_cols=204 Identities=26% Similarity=0.400 Sum_probs=170.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++++|
T Consensus 4 ~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 48999999999721 3699999999999999999999999999999999999999999998 24579
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC------CCH---HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD------VKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
|||||++.++ ..||+||+.++.... ... +++.++++..++.++.++. ..+|||||||||+|
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~l 139 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE---------FTSLSGGQRQLILI 139 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB---------GGGSCHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC---------hhhCCHHHHHHHHH
Confidence 9999999887 689999998863110 111 2233444444443332222 36799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|++++++ .|+|||++|||++.+. .||++++|++|+ ++.|++++++
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999998642 3789999999999986 499999999999 9999999987
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
+.
T Consensus 217 ~~ 218 (253)
T 2nq2_C 217 TS 218 (253)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.8e-51 Score=388.47 Aligned_cols=235 Identities=25% Similarity=0.389 Sum_probs=179.2
Q ss_pred HHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 105 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 105 rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
|+.++++.+++... .. . .....+.|+++||+|.+ +++|+|+||+|++||+++|+||||||||||+|+|+|++
T Consensus 17 ~~~~~~~~~~~~~~-~~-~-~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNN-NR-K-TSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccc-cc-c-ccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 56666666543221 11 1 11122359999999864 25999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc
Q 017091 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264 (377)
Q Consensus 185 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (377)
+|++|+|.++| +|+|+||++.+|+.|++||+. +.. .........++..++.++++.+|.++++.
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Ccc--cchHHHHHHHHHhChHHHHHhccccccch
Confidence 99999999988 499999999999889999998 532 22334455666778888888888777766
Q ss_pred cC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 265 VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 265 ~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
++ ..+||||||||++|||||+.+|++|||||||++||+.++..+.+.+ +++ ..|+|||+||||++.+..||++
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~----~~~~tviivtHd~~~~~~~d~i 228 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL----MANKTRILVTSKMEHLKKADKI 228 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC----TTTSEEEEECCCHHHHHHSSEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh----hCCCEEEEEecCHHHHHcCCEE
Confidence 55 3689999999999999999999999999999999999999998864 344 2478999999999988779999
Q ss_pred EEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 342 VVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 342 ~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
++|++|++++.|++++++.....|.+
T Consensus 229 ~~l~~G~i~~~g~~~~l~~~~~~~~~ 254 (290)
T 2bbs_A 229 LILHEGSSYFYGTFSELQNLRPDFSS 254 (290)
T ss_dssp EEEETTEEEEEECHHHHHHHCHHHHH
T ss_pred EEEECCeEEEeCCHHHHhhhcHHHHH
Confidence 99999999999999999764444443
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-51 Score=386.59 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 132 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
|+++||+++|++. ..+++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. +++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 00369999999999 9999999999999999999999999 9999999999998653 22 6789
Q ss_pred E-EEccCCcCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 G-FVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~-~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+ |+||++.+ ..|++||+.++.. .....+++.++++..++. +..++. ..+||||||||++|||||+.+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRK---------LYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSB---------GGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCC---------hhhCCHHHHHHHHHHHHHHhC
Confidence 9 99999988 8999999987421 122344455555554443 322222 367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cC-eEEEEeCCEEEEEcChHHHhhc
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VD-RIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d-~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|++|||||||++||+.+++.+.+.|+++. . |||++|||++.+.. || ++++|++|++++.|+++++.+.
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~-----~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYG-----K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSC-----S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhc-----C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999872 3 99999999999865 99 9999999999999999998753
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.5e-51 Score=369.94 Aligned_cols=196 Identities=23% Similarity=0.371 Sum_probs=161.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .+++.|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 5999999999963 5999999999999999999999999999999999999999999999999875 256789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC--C-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCP--K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+||||++.+|. .|++||+.++.. . ....+++.++++..++.+. .....+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~LSgGqkqrv~laraL~~ 150 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL----------KKKLGELSQGTIRRVQLASTLLV 150 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT----------TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC----------CCChhhCCHHHHHHHHHHHHHHh
Confidence 99999998884 699999987421 0 1123344444444433221 12236799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
+|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++.+.. ||+|+++ +|+|
T Consensus 151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILK---EKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHH---HHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999864 27899999999999876 7887755 4554
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=7.2e-43 Score=361.97 Aligned_cols=203 Identities=27% Similarity=0.315 Sum_probs=164.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +.+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5999999999964 3799999999999999999999999999999999999999999976 1369
Q ss_pred EEEccCCcC-ccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||+||++.+ +..||.||+... .......+.+.++++..++.++. .....+|||||||||+|||||+.+|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY---------DRNVEDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT---------TSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh---------cCChhhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 478999998652 00000112222233332222111 1123579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEEEEcChHHHhhc
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK 361 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~ 361 (377)
++|||||||++||+.++..+.+.|+++.++ .|.|||+||||++++.. ||||++|++ |++...|+++++++.
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999999999999999999998542 47899999999999975 999999986 888889999888753
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6.1e-43 Score=358.61 Aligned_cols=202 Identities=28% Similarity=0.317 Sum_probs=162.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ ...|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5999999999963 3799999999999999999999999999999999999999999975 1359
Q ss_pred EEEccCCcC-ccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||+||++.. +..||.|++... .......+.+. ++++.+...........+|||||||||+|||||+.+|
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKT---------ELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHH---------HTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHH---------HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 478999987642 00000111222 2233322111111123679999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEEEEcChHHHhh
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLH 360 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~ 360 (377)
++|||||||++||+.++..+.+.|+++.++ .|.|||+||||++++.. ||||++|++ |+++..|++++++.
T Consensus 421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998532 37899999999999875 999999986 78888999988875
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.9e-42 Score=353.05 Aligned_cols=202 Identities=20% Similarity=0.269 Sum_probs=163.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ ..+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5899999999964 378999999999999999999999999999999999999999998764 358
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+|+||+... +..||++|+.+..... .....+.++++..++.++.++. ..+|||||||||+|||||+.+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESN---------VNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSB---------GGGCCHHHHHHHHHHHHHHSC
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCC---------hhhCCHHHHHHHHHHHHHHcC
Confidence 999999765 4789999997632111 1122233344444443322222 267999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEEEEcChHHHh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELL 359 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~~~g~~~~l~ 359 (377)
|++|||||||++||+.++..+.+.|+++.++ .|.|||+||||++++.. ||||++|++ |.+...+++.++.
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~--~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998653 48899999999999976 999999986 5666667766554
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=7.3e-41 Score=346.94 Aligned_cols=198 Identities=25% Similarity=0.265 Sum_probs=156.4
Q ss_pred cEEE--------EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE---------EE
Q 017091 131 HVQF--------VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YI 193 (377)
Q Consensus 131 ~i~~--------~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---------~i 193 (377)
.|++ +||+++|++. ..+|+|+| +|++||+++|+||||||||||+|+|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4888 8999999753 24899999 999999999999999999999999999999999996 45
Q ss_pred CCEeCCCCCHH--HHhcceEEEccCCcC----ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC
Q 017091 194 DGFPLTDLDIR--WLREKIGFVGQEPQL----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 267 (377)
Q Consensus 194 ~g~~i~~~~~~--~~r~~i~~v~Q~~~l----~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (377)
+|.++...... ..+..+++++|.... +..|+.||+.... ..+++.++++..++.+..++. .
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~~~~---------~ 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLDRE---------L 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGGGSB---------G
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchhCCC---------h
Confidence 56544221111 123458899987533 3459999987521 122344555555554333332 2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|||+||||++.+.. ||+|++|++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN---EGKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEecChHHHHhhCCEEEEECC
Confidence 67999999999999999999999999999999999999999999999864 38899999999999875 999999986
Q ss_pred C
Q 017091 347 G 347 (377)
Q Consensus 347 G 347 (377)
+
T Consensus 304 ~ 304 (607)
T 3bk7_A 304 E 304 (607)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-40 Score=343.87 Aligned_cols=202 Identities=22% Similarity=0.341 Sum_probs=162.2
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCC-----cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~G-----e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
++++++|++. ..+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5677888742 35899999999999 7899999999999999999999999999962 11 246
Q ss_pred eEEEccCCcC-ccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQL-LQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l-~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
++|+||+... |..|+++|+....... ...+...++++..++.++.++ ...+|||||||||+|||||+.+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~---------~~~~LSGGqkQRv~iAraL~~~ 485 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQ---------EVQHLSGGELQRVAIVLALGIP 485 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSS---------BSSSCCHHHHHHHHHHHHTTSC
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcC---------ChhhCCHHHHHHHHHHHHHHhC
Confidence 9999999754 5789999986432211 123333334444443322222 2367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEEEEcChHHHhhcC
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHKG 362 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~~ 362 (377)
|++|||||||+|||+.++..+.+.|+++.++ .|.|||+||||++++.. ||||++|++ |+++..|+|+++++..
T Consensus 486 p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~--~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp CSEEEECCTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 9999999999999999999999999998542 48899999999999976 999999996 9999999999998753
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.7e-40 Score=352.68 Aligned_cols=197 Identities=26% Similarity=0.428 Sum_probs=147.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++. .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 59999999999753 246999999999999999999999999999999999999999999999862 136
Q ss_pred EEEccCCcC-----ccccHHHHHh--------------------------------------------------------
Q 017091 211 GFVGQEPQL-----LQMDIKSNIM-------------------------------------------------------- 229 (377)
Q Consensus 211 ~~v~Q~~~l-----~~~tv~eni~-------------------------------------------------------- 229 (377)
+|++|++.. ...|+.+++.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 666665421 1234444432
Q ss_pred ----------cCC----------------------------------------CCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 017091 230 ----------YGC----------------------------------------PKDVKNEDIEWAAKQAYVHEFILSLPC 259 (377)
Q Consensus 230 ----------~~~----------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (377)
++. ......+++ .+.++.+..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i---------~~~Le~lGL 889 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEI---------EEHCSMLGL 889 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHH---------HHHHHHTTC
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHH---------HHHHHHcCC
Confidence 110 000011122 333343322
Q ss_pred Ccc--cccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 260 GYE--TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 260 ~~~--~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
... ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||++++..
T Consensus 890 ~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEFTKN 963 (986)
T ss_dssp CHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHHHTT
T ss_pred CchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHHHHH
Confidence 110 11123579999999999999999999999999999999999999998888754 4699999999999965
Q ss_pred -cCeEEEEeCCEEEEEcC
Q 017091 338 -VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 338 -~d~v~~l~~G~i~~~g~ 354 (377)
||+|++|++|+++..|+
T Consensus 964 l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TCCEEECCBTTBCCC---
T ss_pred hCCEEEEEECCEEEEeCC
Confidence 99999999999987764
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.7e-40 Score=346.11 Aligned_cols=210 Identities=23% Similarity=0.345 Sum_probs=138.0
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhhCCCCC-------CCeEEECCEeC
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPS-------DGQIYIDGFPL 198 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl---------------------~~l~gl~~p~-------~G~I~i~g~~i 198 (377)
.++|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3699999999999999999999999999998 9999999998 45566666554
Q ss_pred CCCCHHHHhcceEEEccCCcC--------------------ccccHHHHHhcCCCCCCC--HHHHHHH-HH-HcCHHHHH
Q 017091 199 TDLDIRWLREKIGFVGQEPQL--------------------LQMDIKSNIMYGCPKDVK--NEDIEWA-AK-QAYVHEFI 254 (377)
Q Consensus 199 ~~~~~~~~r~~i~~v~Q~~~l--------------------~~~tv~eni~~~~~~~~~--~~~~~~~-~~-~~~l~~~~ 254 (377)
.. ..++.+++++|.+.+ ..+|++||+.+....... ..+.... .+ .....+.+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 32 123456666665432 246899999774211100 0010000 00 00011234
Q ss_pred HhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 017091 255 LSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 255 ~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~--illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~ 331 (377)
+.+..+.. ......+|||||||||+|||||+.+|+ +|||||||++||+.+...+.+.|+++++ .|.|||+||||
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~---~g~tvi~vtHd 263 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHD 263 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH---TTCEEEEECCC
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCC
Confidence 44433221 122236799999999999999999998 9999999999999999999999999964 48899999999
Q ss_pred chhHHhcCeEEEE------eCCEEEEEcChHHHhhcCH
Q 017091 332 LSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGR 363 (377)
Q Consensus 332 l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~ 363 (377)
++.+..||+|++| ++|++++.|+++++.+...
T Consensus 264 ~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 264 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 9988789999999 8999999999999987654
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.5e-41 Score=342.37 Aligned_cols=197 Identities=24% Similarity=0.273 Sum_probs=150.6
Q ss_pred EEE-EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE---------EECCEeCCCC
Q 017091 132 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDL 201 (377)
Q Consensus 132 i~~-~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---------~i~g~~i~~~ 201 (377)
.++ +||+|+|++. ..+|+|+| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 5999999753 24899999 999999999999999999999999999999999995 3556543211
Q ss_pred CHHH--HhcceEEEccCCcCc----cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 202 DIRW--LREKIGFVGQEPQLL----QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 202 ~~~~--~r~~i~~v~Q~~~l~----~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
.... .+..+++++|+..++ ..|+.||+.... ..+++.++++..++.+..++ ...+||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----~~~~~~~~l~~lgl~~~~~~---------~~~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----ETGKLEEVVKALELENVLER---------EIQHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----SSSCHHHHHHHTTCTTTTTS---------BGGGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----HHHHHHHHHHHcCCChhhhC---------ChhhCCHHHH
Confidence 0111 124589999976433 248889886421 11223444555444322111 2367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||+||||++.+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE---EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999864 38899999999999876 9999999864
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.8e-37 Score=332.70 Aligned_cols=196 Identities=27% Similarity=0.370 Sum_probs=161.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+...|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +.++
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 4778899999974 369999999999999999999999999999999996 554 4544311 1247
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+|++|++ .++ ..|+.||+.+.. ... .+++.+.++..++ .+..++.+ .+||||||||++|||||+.+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~-~~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESG-VGT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTC-SSC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHhh-cCH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhcC
Confidence 8999985 444 679999998621 112 5566777777777 44555443 56999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHHhh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 360 (377)
|++|||||||++||+.+++.+.+.|++ .|.|+|+||||++.+.. ||+|++|++|+++ ..|+++++..
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~------~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT------CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH------SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh------CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999986 27899999999999976 9999999999997 5899998865
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.8e-38 Score=333.99 Aligned_cols=205 Identities=30% Similarity=0.408 Sum_probs=147.5
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------hCCCCCCCeEEECCEeCCCCCHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------------RLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----------------------gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
.++|+||||+|++||++||+||||||||||+++|+ |+.. .+|.|.+++.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998754 3333 346888888877543210
Q ss_pred HHh-----------------------------------------cceEEEccCCcC------------------------
Q 017091 205 WLR-----------------------------------------EKIGFVGQEPQL------------------------ 219 (377)
Q Consensus 205 ~~r-----------------------------------------~~i~~v~Q~~~l------------------------ 219 (377)
... ...|+++|+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 000 012333332211
Q ss_pred ---------ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC-
Q 017091 220 ---------LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP- 288 (377)
Q Consensus 220 ---------~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p- 288 (377)
+..|++||+.+... . . ..... .+.+..+..+... .....+|||||||||+|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~--~-~-~~~~~------~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS--I-P-KIKRK------LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT--C-H-HHHHH------HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH--h-h-hHHHH------HHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 13688888877522 1 1 11111 1233333332211 1223689999999999999999887
Q ss_pred --CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhh
Q 017091 289 --AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLH 360 (377)
Q Consensus 289 --~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~ 360 (377)
++|||||||+|||+.+...+++.|+++++ .|.|||+||||++.+..||||++| ++|+|++.|+++++.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 59999999999999999999999999964 389999999999988779999999 8999999999999986
Q ss_pred cCHHH
Q 017091 361 KGRLY 365 (377)
Q Consensus 361 ~~~~~ 365 (377)
....|
T Consensus 641 ~~~~~ 645 (670)
T 3ux8_A 641 VKESH 645 (670)
T ss_dssp CTTCH
T ss_pred CCccH
Confidence 54433
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-38 Score=324.78 Aligned_cols=197 Identities=22% Similarity=0.297 Sum_probs=145.0
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-----------ECCEeCCCCCHH
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR 204 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~ 204 (377)
|++++|+.. ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. +.|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 467888753 24778777 6999999999999999999999999999999999982 333322111111
Q ss_pred HHhcce--EEEccCCcCc-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 205 WLREKI--GFVGQEPQLL-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 205 ~~r~~i--~~v~Q~~~l~-------~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
.+...+ .+.+|....+ ..++.+++... .....+.+.++++..++....++.+ .+||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--MEKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--CCSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--hhhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence 122223 2334432211 12566665542 1223455566666666544444333 67999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
|||+|||||+.+|++||||||||+||+.+...+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|..
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA---PTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT---TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999999999864 48899999999999976 999999987654
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.2e-38 Score=319.72 Aligned_cols=192 Identities=20% Similarity=0.285 Sum_probs=142.4
Q ss_pred EEEEEcCCCCCCCceeeeeEE-EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE-----------EECCEeCCCCCH
Q 017091 136 NISFHYPSRPTVPILNHVCLT-IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLDI 203 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~-i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-----------~i~g~~i~~~~~ 203 (377)
+++.+|+.+ .++-..|. +++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 467789753 34555554 45899999999999999999999999999999998 577766532211
Q ss_pred HHHhc--c----eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLRE--K----IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~--~----i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..... . +.+++|.+.++.+++.+++..... .+...++++..++....++. ..+||||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~~~~~l~~l~l~~~~~~~---------~~~LSgGe~Qr 146 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE----RGKKDEVKELLNMTNLWNKD---------ANILSGGGLQR 146 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC----SSCHHHHHHHTTCGGGTTSB---------GGGCCHHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh----HHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHH
Confidence 11111 2 333444444556788887753211 12234455555543322221 25799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
|+|||||+.+|++||||||||+||+.++..+.+.|++++ .|+|||+||||++.+.. ||+|++|++|.
T Consensus 147 v~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~----~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL----KNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC----TTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh----CCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999984 37899999999999876 99999998754
No 60
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.7e-41 Score=323.25 Aligned_cols=238 Identities=14% Similarity=0.160 Sum_probs=188.8
Q ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEc
Q 017091 62 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY 141 (377)
Q Consensus 62 v~~g~lt~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y 141 (377)
...+..+-+.+.+|+.+..+ ..|+..++..+..++.+..+..|+.++++.+++.... . ..++...+.|+++||+|+|
T Consensus 35 ~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~-~~~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 35 YALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-E-GSWKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-S-CCTHHHHHHHHHTTCCHHH
T ss_pred HHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-C-CcccccCCeEEEEEEEEEc
Confidence 34455667788888877666 4789999999999999999999999999875432111 1 1111122358999999999
Q ss_pred CCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 017091 142 PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 221 (377)
Q Consensus 142 ~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 221 (377)
+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|.
T Consensus 112 ~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 112 F----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWL 166 (305)
T ss_dssp H----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGG
T ss_pred C----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccc
Confidence 6 26999999999999999999999999999999999999 8988 467899999999
Q ss_pred ccHHH-HHhcCCCCCCCHHHHHHHHHHcCHHHHHHh-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC
Q 017091 222 MDIKS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299 (377)
Q Consensus 222 ~tv~e-ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~ 299 (377)
.|+++ ||.++. +.++ .++++++. +|.+++ +..|||||||| |||++++|+||| ||+
T Consensus 167 ~ti~~~ni~~~~--~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl----Ts~ 223 (305)
T 2v9p_A 167 ASLADTRAALVD--DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV----TSN 223 (305)
T ss_dssp GGGTTCSCEEEE--EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----EES
T ss_pred ccHHHHhhccCc--cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----ECC
Confidence 99997 998852 2222 23455666 676666 56899999999 999999999999 999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 300 LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
||+.++..+.. +||+++.+..||+| +|++|++++.|+++++ ++.|++++..
T Consensus 224 LD~~~~~~i~~-----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~ 274 (305)
T 2v9p_A 224 IDVQAEDRYLY-----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGR 274 (305)
T ss_dssp SCSTTCGGGGG-----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTT
T ss_pred CCHHHHHHHHH-----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHH
Confidence 99998866631 29999988889999 9999999999999999 5678777654
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-35 Score=316.19 Aligned_cols=209 Identities=30% Similarity=0.440 Sum_probs=150.2
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHhhCCCCC------CC------eEEECCEeCCCCC---H
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------NLLLRLYEPS------DG------QIYIDGFPLTDLD---I 203 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl---------~~l~gl~~p~------~G------~I~i~g~~i~~~~---~ 203 (377)
..|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..++.... +
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4444443333 33 2445554443211 0
Q ss_pred H-------HH-------------------------------hcceEEEccCCcCc-------------------------
Q 017091 204 R-------WL-------------------------------REKIGFVGQEPQLL------------------------- 220 (377)
Q Consensus 204 ~-------~~-------------------------------r~~i~~v~Q~~~l~------------------------- 220 (377)
. .. .+..|+++++..++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00 12357777766543
Q ss_pred --------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc-cCCCCCChHHHHHHHHHHHHcCCC---
Q 017091 221 --------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARAILRDP--- 288 (377)
Q Consensus 221 --------~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~LSgGq~QRv~iAral~~~p--- 288 (377)
.+|+.|++.+... . . ... ...+.++.+..++... ....+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~--~-~-~~~------~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN--I-P-SIK------RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT--C-H-HHH------HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhc--c-h-hHH------HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 2355555554311 0 0 011 1223444444443221 224689999999999999999875
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~ 362 (377)
++|||||||+|||+.+++.+++.|+++.+ .|.|||+||||++.++.||+|++| ++|+|++.|+|+++++..
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~---~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVD---RGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 79999999999999999999999999864 488999999999999889999999 899999999999999887
Q ss_pred HHHHHHH
Q 017091 363 RLYAKLV 369 (377)
Q Consensus 363 ~~~~~~~ 369 (377)
+.|...+
T Consensus 905 ~syt~~~ 911 (916)
T 3pih_A 905 HSYTGRF 911 (916)
T ss_dssp TCHHHHH
T ss_pred chHHHHH
Confidence 7676544
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=4.7e-35 Score=311.96 Aligned_cols=215 Identities=28% Similarity=0.402 Sum_probs=156.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-hCC-------CCCCC-------------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY-------EPSDG------------- 189 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~-------~p~~G------------- 189 (377)
.|+++|++. .+|+||||+|++||+++|+|+||||||||+++|+ |.+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488888851 3799999999999999999999999999999864 221 12333
Q ss_pred eEEECCEeCCCCC---HH-------HH---------hcceEEEccCCcC---------------------c---------
Q 017091 190 QIYIDGFPLTDLD---IR-------WL---------REKIGFVGQEPQL---------------------L--------- 220 (377)
Q Consensus 190 ~I~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~l---------------------~--------- 220 (377)
.|.+++.++...+ +. .. .+.+||++|.+.+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3788888774321 11 11 1336888875321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHH
Q 017091 221 -------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQ 274 (377)
Q Consensus 221 -------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq 274 (377)
.+|+.||+.+... . . .... ..+.++.+..++ .......+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~--~-~-~~~~------~~~~L~~~gL~~~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS--I-P-KIKR------KLETLYDVGLGYMKLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS--C-H-HHHH------HHHHHHHTTCSSSBTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc--c-h-hHHH------HHHHHHHcCCCcccccCchhhCCHHH
Confidence 1355555554311 1 1 1111 134455554433 1122246899999
Q ss_pred HHHHHHHHHHcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------e
Q 017091 275 KQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------D 345 (377)
Q Consensus 275 ~QRv~iAral~~~p---~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~ 345 (377)
||||+|||+|+.+| ++|||||||+|||+.+...+++.|+++.+ .|.|||+||||++.+..||+|++| +
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gG~~ 927 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDR 927 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEECSSSTTS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEEcCCCCCC
Confidence 99999999999875 99999999999999999999999999864 488999999999998779999999 7
Q ss_pred CCEEEEEcChHHHhhcCHHHH
Q 017091 346 DGRIIEVGNHAELLHKGRLYA 366 (377)
Q Consensus 346 ~G~i~~~g~~~~l~~~~~~~~ 366 (377)
+|+|+..|+++++......|.
T Consensus 928 ~G~Iv~~g~~~el~~~~~~~t 948 (972)
T 2r6f_A 928 GGQIVAVGTPEEVAEVKESHT 948 (972)
T ss_dssp CCSEEEEESHHHHHTCTTCHH
T ss_pred CCEEEEecCHHHHHhCchhHH
Confidence 899999999999987654443
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=8.3e-35 Score=309.34 Aligned_cols=217 Identities=24% Similarity=0.335 Sum_probs=155.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHH-HhhCC-------CC----------------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLY-------EP---------------- 186 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~-l~gl~-------~p---------------- 186 (377)
.|+++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 502 ~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 502 WLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp EEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred eEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 499999975 16999999999999999999999999999996 76554 23
Q ss_pred --CCC-------eEEECCEeCCCCCH----------HHHhc---------ceEEEccCC---------------------
Q 017091 187 --SDG-------QIYIDGFPLTDLDI----------RWLRE---------KIGFVGQEP--------------------- 217 (377)
Q Consensus 187 --~~G-------~I~i~g~~i~~~~~----------~~~r~---------~i~~v~Q~~--------------------- 217 (377)
.+| .|.+++.++...+. ..+|+ ..||.++..
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899888753321 12222 123322211
Q ss_pred -cCc-------------------------cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCCCccc-cc
Q 017091 218 -QLL-------------------------QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYET-LV 265 (377)
Q Consensus 218 -~l~-------------------------~~tv~eni~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 265 (377)
.++ ..++.||+.+... ..... .. ....+.++.+..++.. ..
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~-~~------~~~~~~L~~~gL~~~~l~~ 726 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADES-AI------FRALDTLREVGLGYLRLGQ 726 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSH-HH------HHHHHHHHHTTCTTSBTTC
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcch-HH------HHHHHHHHHcCCCcccccC
Confidence 111 1345555432100 00001 11 1234456665544422 22
Q ss_pred CCCCCChHHHHHHHHHHHHcCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEE
Q 017091 266 DDDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 342 (377)
Q Consensus 266 ~~~~LSgGq~QRv~iAral~~~---p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~ 342 (377)
...+|||||||||+|||+|+++ |++|||||||+|||+.+.+.+.+.|+++.+ .|.|||+||||++++..||||+
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD---AGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEE
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEE
Confidence 2468999999999999999996 799999999999999999999999999864 4889999999999996699999
Q ss_pred EE------eCCEEEEEcChHHHhhcCHHH
Q 017091 343 VI------DDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 343 ~l------~~G~i~~~g~~~~l~~~~~~~ 365 (377)
+| ++|+|++.|+++++++....|
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 99 799999999999998765433
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-38 Score=319.60 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=149.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-e-EEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-IYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~-I~i~g~~i~~~~~~~~r~ 208 (377)
+++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.+||. .++
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccC
Confidence 467777777763 69999999999999999999999999999999999999 9 999981 257
Q ss_pred ceEEEccCCcCc----cccHHHHHhcCCCC--CC-CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL----QMDIKSNIMYGCPK--DV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~~l~----~~tv~eni~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
.++|+||++.+| ..|++||+ ++... .. ..+.+..+++.+ |+.......+|||||||||+||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~~~~LSgGq~qrlalA 247 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINENKDLYLECISQLGQV 247 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGGCHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccchhhhhHHHHHHHHHH
Confidence 799999998654 35899998 65321 00 011111112222 2222222457999999999999
Q ss_pred HH--HcCCCCE----EEEeC-cCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch------hHHh-cCe-----EE
Q 017091 282 RA--ILRDPAI----LLLDE-ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS------TIKA-VDR-----IV 342 (377)
Q Consensus 282 ra--l~~~p~i----lllDE-Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~------~~~~-~d~-----v~ 342 (377)
|| |+.+|++ ||||| ||++||+. .+.+.++++++ +.|+|+|||+.+ .+.. ||+ |+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi 320 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIF 320 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEE
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh------CCCEEEEEccCchhhhHHHHHHhcccccCCEEE
Confidence 99 9999999 99999 99999999 66666666554 679999999988 5554 999 99
Q ss_pred EEe-CCEEEEEcChHHHhh
Q 017091 343 VID-DGRIIEVGNHAELLH 360 (377)
Q Consensus 343 ~l~-~G~i~~~g~~~~l~~ 360 (377)
+|+ +|+++ .|+++++.+
T Consensus 321 ~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 321 FIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp EECCCTTCC-CCCHHHHHH
T ss_pred EEeCCCcEE-ECCHHHHhh
Confidence 999 99999 999988753
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.9e-34 Score=306.84 Aligned_cols=217 Identities=24% Similarity=0.360 Sum_probs=153.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-h----CCC---CCCCe------------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-R----LYE---PSDGQ------------ 190 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-g----l~~---p~~G~------------ 190 (377)
.|+++|++. .+|+||||+|++|+++||+|+||||||||+++|+ | .+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 588999851 3799999999999999999999999999999853 2 222 23453
Q ss_pred -EEECCEeCCCC---CHH-------HH---------hcceEEEccCCcC---------------------c---------
Q 017091 191 -IYIDGFPLTDL---DIR-------WL---------REKIGFVGQEPQL---------------------L--------- 220 (377)
Q Consensus 191 -I~i~g~~i~~~---~~~-------~~---------r~~i~~v~Q~~~l---------------------~--------- 220 (377)
|.+++.++... ++. .. .+..||++|...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 45555555321 111 11 1346777775321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHH
Q 017091 221 -------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQ 274 (377)
Q Consensus 221 -------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq 274 (377)
.+|+.|++.+... . . .... ..+.++.+..++. ......+|||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~--~-~-~~~~------~~~~L~~lgL~~~~l~~~~~~LSGGe 868 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP--I-A-GVHR------YLRTLVDVGLGYVRLGQPAPTLSGGE 868 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT--C-H-HHHH------HHHHHHHTTGGGSBTTCCGGGSCHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc--c-h-HHHH------HHHHHHHcCCCcccccCccccCCHHH
Confidence 1244555544211 1 1 1111 1234455443321 112236799999
Q ss_pred HHHHHHHHHHcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------e
Q 017091 275 KQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------D 345 (377)
Q Consensus 275 ~QRv~iAral~~~p---~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~ 345 (377)
||||+|||+|+.+| ++|||||||+|||+.+...+.+.|+++.+ .|.|||+||||++.+..||+|++| +
T Consensus 869 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gg~~ 945 (993)
T 2ygr_A 869 AQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD---KGNTVIVIEHNLDVIKTSDWIIDLGPEGGAG 945 (993)
T ss_dssp HHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSTTS
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEECCCcCCC
Confidence 99999999999875 99999999999999999999999999864 488999999999998779999999 6
Q ss_pred CCEEEEEcChHHHhhcCHHHHHH
Q 017091 346 DGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 346 ~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
+|++++.|+++++......|...
T Consensus 946 ~G~Iv~~G~~~el~~~~~~~t~~ 968 (993)
T 2ygr_A 946 GGTVVAQGTPEDVAAVPASYTGK 968 (993)
T ss_dssp CSEEEEEECHHHHHHCTTCHHHH
T ss_pred CCEEEEecCHHHHHhCCHHHHHH
Confidence 89999999999998765545443
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=3.7e-33 Score=277.21 Aligned_cols=199 Identities=17% Similarity=0.202 Sum_probs=143.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--------------------------------------CCCCe
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--------------------------------------PSDGQ 190 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--------------------------------------p~~G~ 190 (377)
+++++||++.+| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999977764 45788
Q ss_pred EEECCEeCCCCCHHHHhcc-eEEEccCCcCccccHHHHHhcCCCCCCCH-------------------------------
Q 017091 191 IYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGCPKDVKN------------------------------- 238 (377)
Q Consensus 191 I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~tv~eni~~~~~~~~~~------------------------------- 238 (377)
+++||++++..+..++... +++++|++.++..+..++..+-.. ....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999875445555555 899999987764443333222100 0000
Q ss_pred -------------HHHHHH-----------HH--HcCHHHHHHhCCCC------------------ccc---cc--CCCC
Q 017091 239 -------------EDIEWA-----------AK--QAYVHEFILSLPCG------------------YET---LV--DDDL 269 (377)
Q Consensus 239 -------------~~~~~~-----------~~--~~~l~~~~~~~~~~------------------~~~---~~--~~~~ 269 (377)
+++... .+ ...+.+.+..+... .+. .. ++.+
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000000 00 00112223332211 000 00 1111
Q ss_pred --------CChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcC
Q 017091 270 --------LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 270 --------LSgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d 339 (377)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++. +|.|||+|||+++.+..||
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~----~~~~vi~itH~~~~~~~~d 363 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA----DTRQVLVVTHLAQIAARAH 363 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCS
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEeCcHHHHhhcC
Confidence 7999999999999999999 9999999999999999999999999984 3789999999998887799
Q ss_pred eEEEE----eCCEEEEEc
Q 017091 340 RIVVI----DDGRIIEVG 353 (377)
Q Consensus 340 ~v~~l----~~G~i~~~g 353 (377)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999997654
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=8.3e-30 Score=245.50 Aligned_cols=202 Identities=23% Similarity=0.278 Sum_probs=136.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC----------------------------------------------
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---------------------------------------------- 184 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~---------------------------------------------- 184 (377)
++++|++.+| +++|+||||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999999553
Q ss_pred ----CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC--C------------CHHHHHHHH
Q 017091 185 ----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--V------------KNEDIEWAA 245 (377)
Q Consensus 185 ----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~--~------------~~~~~~~~~ 245 (377)
.+.+|.+.+||.++...........+++.||+..++ .+++.+|+....... . ..+++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578899998874333445556789889888766 788988886531100 0 001111111
Q ss_pred HHc------------CHH-HHHHhCCCCccccc--------CCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCC
Q 017091 246 KQA------------YVH-EFILSLPCGYETLV--------DDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSAL 300 (377)
Q Consensus 246 ~~~------------~l~-~~~~~~~~~~~~~~--------~~~~LSgGq~QRv~iAral~----~~p~illlDEPts~L 300 (377)
... .+. ...+.++.+++..+ ....||||||||++|||||+ .+|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 100 000 00111222333221 12479999999999999997 689999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE--EEEeCCEEE-EEcChHH
Q 017091 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI--VVIDDGRII-EVGNHAE 357 (377)
Q Consensus 301 D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v--~~l~~G~i~-~~g~~~~ 357 (377)
|+...+.+.+.++++. .+.|+|+|||+++....||++ ++|.+|... ...+.++
T Consensus 255 D~~~~~~l~~~l~~~~----~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENS----KHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHT----TTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999873 378999999998777779986 888887543 3344443
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=8.1e-33 Score=250.43 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=100.8
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
.+|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.. +....++.+||+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------HHH
Confidence 589986 89999999999999999999999999 999999943 33321 1123467899999987 445
Q ss_pred H-hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 228 I-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 228 i-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
+ .+..+ ....+........+.++++. + | |||||++|||||+.+|++|||||||++ ++.
T Consensus 79 l~~~~~~---~~~~~~~~~~~~~~~~~l~~---g---------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRP---LHDALRDMVEPEVIPKLMEA---G---------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHH---HHHHHTTTSCTTHHHHHHHT---T---------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHH---HHHHHHHhccHHHHHHHHHh---C---------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 4 22100 00000000000112333332 1 2 999999999999999999999999999 788
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
.+.+.|+++ + .|+||| +|||++.+.. ....++|.
T Consensus 138 ~l~~~l~~l-~---~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 138 QMKMFLTRL-G---FGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHTTB-C---TTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHh-c---CCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 888888877 3 478999 9999987643 33345553
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=2e-28 Score=239.78 Aligned_cols=81 Identities=28% Similarity=0.449 Sum_probs=75.0
Q ss_pred CCCChHHHHHHHHHHHHc------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 268 DLLSGGQKQRIAIARAIL------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
.+|||||||||+|||||+ .+|++|||||||++||+.+...+.+.|+++.+ .|+|||+||||++.+..||++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~---~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER---LNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG---SSSEEEEEESCHHHHTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEecchHHHHhCCEE
Confidence 479999999999999999 79999999999999999999999999999864 489999999999987779999
Q ss_pred EEEeCCEEEE
Q 017091 342 VVIDDGRIIE 351 (377)
Q Consensus 342 ~~l~~G~i~~ 351 (377)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.96 E-value=6.1e-30 Score=224.33 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=106.2
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC--ccccHHHHHh
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL--LQMDIKSNIM 229 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l--~~~tv~eni~ 229 (377)
||||++++||+++|+||||||||||+|++.+ |...+ +...++ |+++|++.- +..++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999652 22222 122222 777887632 2333333321
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH-----
Q 017091 230 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE----- 303 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~----- 303 (377)
. .. .... ..++..... ....|||||||++||||++.+|++|+|||||++||+.
T Consensus 64 ~-------------~~-----~~~~---~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y-------------IV-----SKRL---QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H-------------HH-----HHHH---HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H-------------HH-----HHHH---hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 00 0001 123333222 2457999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 304 -----------SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 304 -----------~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
....+.+.++++++ .|.|+|+||||++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~---~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQR---EGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHH---HTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHh---cCCcEEEEeCCHHHhhhhhhc
Confidence 55888888887764 389999999999999877664
No 71
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.94 E-value=1.2e-31 Score=259.07 Aligned_cols=206 Identities=13% Similarity=0.172 Sum_probs=140.5
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEE---------E
Q 017091 66 QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQ---------F 134 (377)
Q Consensus 66 ~lt~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~---------~ 134 (377)
.+|.+.+.+++.+...+..+ .+.. ....+..+..+..|+..+++.|..... ....... .....++ +
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~~-~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVNDE-TISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSSTT-CCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCCC-CceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999998888776655443 1221 111222233344566666543322110 0000000 0011233 4
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 214 (377)
++++| | . ++++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+. +.....++.+++++
T Consensus 152 ~~v~f-y--~---~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 152 NLLDN-K--E---QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF 223 (330)
T ss_dssp TTSTT-H--H---HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred Cchhh-H--H---HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence 45555 4 1 389999999999999999999999999999999999999999999998652 21111234455443
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 017091 215 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 215 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlD 294 (377)
+ |||+||++|||||..+|++||+|
T Consensus 224 g--------------------------------------------------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 G--------------------------------------------------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp B--------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred C--------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 295 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
|||+. ++.+.|+.+.. .+.|+|+++|+++....|||+++|.+|.
T Consensus 248 E~~~~-------e~~~~l~~~~~---g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCS---GHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CCCST-------HHHHHHHHHHT---TCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred CCChH-------HHHHHHHHHhc---CCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 99982 35566776642 2358999999999667799999998875
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=2.4e-30 Score=256.07 Aligned_cols=176 Identities=19% Similarity=0.186 Sum_probs=135.3
Q ss_pred CceeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh
Q 017091 148 PILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 148 ~vL~~isl~i~~Ge--------------------~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
.+|++|||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+++ +
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 1
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH--HHHHHHHHHHHc
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAIL 285 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgG--q~QRv~iAral~ 285 (377)
.++++|++.....|+.||+.++.. ...+.+.++..++.+. +... . |||| |+||++|||||+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~~--------~~~~--~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYEY--------DFFI--I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGGC--------SEEE--E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCcc--------CCeE--E-eCCCCccHHHHHHHHHHH
Confidence 288999875447899998876532 1223344444443211 1111 2 8999 999999999999
Q ss_pred C----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-----cc-CCCCeEEEEEecCchh--HHh-cCeEE-EEe
Q 017091 286 R----------DPAILLLDEATSALDSESEHYVKGVLHALR-----ND-CKTKRTVIVIAHRLST--IKA-VDRIV-VID 345 (377)
Q Consensus 286 ~----------~p~illlDEPts~LD~~~~~~i~~~l~~l~-----~~-~~~g~tvi~itH~l~~--~~~-~d~v~-~l~ 345 (377)
. +|++++|||||++||+.++.++.+.++++. +. .....+++++||+++. ++. ||++. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 999999999999999999999999998874 21 1123678899999886 765 88874 444
Q ss_pred CC
Q 017091 346 DG 347 (377)
Q Consensus 346 ~G 347 (377)
.|
T Consensus 253 eg 254 (413)
T 1tq4_A 253 IY 254 (413)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.94 E-value=1.1e-28 Score=218.03 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+|+|+|++. |.++|.+.........++++||++|++ ++.+|+. +.. ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-~~~~--- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-FFTS--- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET-TCCC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh-cCCc---
Confidence 689999999999999999999985 567776543222113467899999986 2222321 100 0000
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHH-----HcCCCCEEEEeC--cCCCCCHHHHHHHHHHH
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARA-----ILRDPAILLLDE--ATSALDSESEHYVKGVL 312 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAra-----l~~~p~illlDE--Pts~LD~~~~~~i~~~l 312 (377)
+...+ ..+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+
T Consensus 67 --------------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 67 --------------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp --------------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred --------------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 00111 24699999999999996 999999999999 99999999998888877
Q ss_pred HHhhccCCCCeEEEEEec---CchhHHh-cCeEEEEeCCEEEE
Q 017091 313 HALRNDCKTKRTVIVIAH---RLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 313 ~~l~~~~~~g~tvi~itH---~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
.+ .+.|+|++|| +.+.+.. ||+ .+|++++
T Consensus 127 ~~------~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 127 HD------PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TC------TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred hc------CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 54 2567888885 8888875 887 4566655
No 74
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.93 E-value=1.9e-29 Score=227.68 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=113.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 225 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 225 (377)
.++++| .+|++||+++|+||||||||||+|+|+|+++ .|.+++...........++.++|+||++.+| ..|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999996 3555442211111112356799999999877 56777
Q ss_pred HHHhcCC-------CCCCCHHHHHHH----------HHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 226 SNIMYGC-------PKDVKNEDIEWA----------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 226 eni~~~~-------~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
+|+.... .......++.+. ++..++.++.+..| ..|| ||+.+|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~lS-----------~l~~~p 142 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP---------EAVT-----------VFLAPP 142 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT---------TSEE-----------EEEECS
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC---------CcEE-----------EEEECC
Confidence 7763210 001112222222 22334444445544 3456 899999
Q ss_pred CEEEEeCcCCCC----CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe
Q 017091 289 AILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 345 (377)
Q Consensus 289 ~illlDEPts~L----D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~ 345 (377)
++++|||||+++ |+..++++.+.+++++++ .|.|+|+||||++.+.. ||+|++|.
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQ--GDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGG--GGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh--ccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999998 788999999999998643 47899999999999875 99999984
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.93 E-value=1.3e-28 Score=246.17 Aligned_cols=199 Identities=18% Similarity=0.112 Sum_probs=153.2
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE---eCCCCC----
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLD---- 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~---~i~~~~---- 202 (377)
..++++|+++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++..+.
T Consensus 130 ~~l~~~~v~~~~~tg--~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCCC--ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 358999999999732 4699999 999999999999999999999999999999999999999998 443321
Q ss_pred -HHHHhcceEEEccC-CcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 203 -IRWLREKIGFVGQE-PQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 203 -~~~~r~~i~~v~Q~-~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
...+++.++|++|+ ..++ ..|+.+|+.+.. + .... ....+..+++ ....||+|| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e-~~~~-~~~~v~~~ld----------~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------E-DFRD-RGQHVLLIMD----------SLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------H-HHHT-TTCEEEEEEE----------CHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------H-HHHh-CCCCHHHHHH----------hHHHHHHHH-HHHH
Confidence 23467789999995 3334 679999987631 0 0000 0000000000 013589999 9999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC-CCCe-----EEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~-~~g~-----tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
|| +.+|++ |+|||+.....+.+++.++.+.. ..|. ||+++|||++ ...||++++|.+|+|+..+
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 899998 99999999999999998875310 1264 9999999999 5569999999999999999
Q ss_pred ChHHHhh
Q 017091 354 NHAELLH 360 (377)
Q Consensus 354 ~~~~l~~ 360 (377)
+++++..
T Consensus 338 ~~~~~~~ 344 (438)
T 2dpy_A 338 RLAEAGH 344 (438)
T ss_dssp HHHHTTC
T ss_pred CHHHccC
Confidence 8887643
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.93 E-value=2.4e-28 Score=233.17 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=126.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHH--hcceEEEccCCc-Cc-
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL--REKIGFVGQEPQ-LL- 220 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~-l~- 220 (377)
.++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+..... ..+ +..|+|++|++. ++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 3467899999999999999999999999999999999999999999998754321 222 357999999987 66
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC--EEEEeCc
Q 017091 221 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA--ILLLDEA 296 (377)
Q Consensus 221 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~--illlDEP 296 (377)
..|++||+.++..... +. .+++.. |...... ..+|| |||++||||++.+|+ +|+|| |
T Consensus 169 ~~~v~e~l~~~~~~~~-d~------------~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-p 229 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGY-DV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-G 229 (302)
T ss_dssp HHHHHHHHHHHHHTTC-SE------------EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-G
T ss_pred HHHHHHHHHHHHHcCC-cc------------hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-C
Confidence 5799999976421110 00 011111 1111000 13588 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec---------CchhHHh-cCeEEEEeCCEEE
Q 017091 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIKA-VDRIVVIDDGRII 350 (377)
Q Consensus 297 ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH---------~l~~~~~-~d~v~~l~~G~i~ 350 (377)
|+|||+.++. +++.+. .|.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 230 tsglD~~~~~------~~~~~~--~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 230 NTGLNMLPQA------REFNEV--VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGGHHHH------HHHHHH--TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCcCHHHHH------HHHHHh--cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9999998652 333321 3789999999 3344444 6899999999753
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=6.5e-30 Score=232.93 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=101.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcceEEEccCCcCcc-cc-H
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLLQ-MD-I 224 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~l~~-~t-v 224 (377)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...+..++|+||++.+|. .+ .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 877644322 223567999999987763 22 1
Q ss_pred HHHHhc---CCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH-----HHHHcCCCCEEEEeC
Q 017091 225 KSNIMY---GCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI-----ARAILRDPAILLLDE 295 (377)
Q Consensus 225 ~eni~~---~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i-----Aral~~~p~illlDE 295 (377)
.+++.+ ... .......+.++++.. . .... ...|||||+||++| ||+++.+|++++|||
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~---------~---~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQN---------K---ICLF-EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTT---------C---EEEE-EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCC---------C---cEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 222221 100 001122233333221 1 1111 14689999999999 899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhc
Q 017091 296 ATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 296 Pts~LD~~~~~~i~~~l~~l~~ 317 (377)
||+++|..++..+.+.+.++.+
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999988887643
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.92 E-value=4.2e-27 Score=228.97 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=126.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHH--hcceEEEccCCc-Cc-cc
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL--REKIGFVGQEPQ-LL-QM 222 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~-l~-~~ 222 (377)
.++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+..... ..+ +..|+|++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46899999999999999999999999999999999999999999998754321 122 457999999987 66 57
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCC
Q 017091 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA--ILLLDEATS 298 (377)
Q Consensus 223 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~--illlDEPts 298 (377)
|++||+.++..... +. .+++.. |...... ..+|| |||++||||++.+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~-d~------------~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGY-DV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTC-SE------------EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCC-HH------------HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 99999976421110 00 011111 1111000 13588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEec---------CchhHHh-cCeEEEEeCCEE
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH---------~l~~~~~-~d~v~~l~~G~i 349 (377)
|||+.++. +++.+. .|.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 289 glD~~~~~------~~~~~~--~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 289 GLNMLPQA------REFNEV--VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGHHHH------HHHHHH--TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCHHHHH------HHHHHh--cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99998652 233221 3789999999 3344444 689999999975
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.91 E-value=3.3e-27 Score=221.87 Aligned_cols=147 Identities=19% Similarity=0.205 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC--CCH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--VKN 238 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~--~~~ 238 (377)
.++|+||||||||||+|+|+|+.+|++|+|.++|.++... ..++.++|++|++.++ ..||.||+.++.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 5899999999999999999999999999999999887432 2356799999999887 679999999875321 112
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.+..... .++.+.++ .+||||||||+++|||++. ++++|||+++||+.. .+.++.+++
T Consensus 81 ~~i~~~~~----~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-
T ss_pred HHHHHHHH----HHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-
Confidence 22333222 23333333 3599999999999999886 999999999999986 344555542
Q ss_pred CCCCeEEEEEecCchhH
Q 017091 319 CKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~ 335 (377)
. .++|+|.|..+.+
T Consensus 140 --~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 --V-VNIIPVIAKADTM 153 (270)
T ss_dssp --T-SEEEEEETTGGGS
T ss_pred --c-CcEEEEEeccccC
Confidence 2 6889898887654
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.91 E-value=3.8e-24 Score=208.40 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcC
Q 017091 269 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d 339 (377)
.||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.++ +.|+|++||. +. .||
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~------~qt~i~~th~-~~--~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV------PQAIVTGTEL-AP--GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS------SEEEEEESSC-CT--TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc------CcEEEEEEec-cc--cCC
Confidence 59999999999999999 899999999999999999999999999876 2699999994 44 899
Q ss_pred eEEEEeCCEEEEEcChHHH
Q 017091 340 RIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 340 ~v~~l~~G~i~~~g~~~~l 358 (377)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999999876
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.91 E-value=3.4e-28 Score=233.12 Aligned_cols=207 Identities=17% Similarity=0.185 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEE-----------------------
Q 017091 100 IGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT----------------------- 156 (377)
Q Consensus 100 ~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~----------------------- 156 (377)
..++.++.+.+..+.+.. +....+.....|+++||++.|. ++++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~---~~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEE---ELVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPD 86 (312)
T ss_dssp HHHHHGGGTTCCCCCCHH---HHHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSS
T ss_pred HHHHHHHHhcCCCCCCHH---HHHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccC
Confidence 345566655444433221 1111222334699999999994 477877765
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 236 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 236 (377)
+++|+++||+||||||||||+++|+|+++|+.|. .++++|+|++.+++.|++||+.+......
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCC
Confidence 8999999999999999999999999999998663 46999999998886699999875321111
Q ss_pred CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh
Q 017091 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 316 (377)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~ 316 (377)
.... +...+.++++.+..+.. ......|||||+||+++|||++.+|+|||+|||++.+|+.. ..+.++
T Consensus 150 ~~~~-----d~~~~~~~L~~l~~~~~-~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~- 217 (312)
T 3aez_A 150 PESY-----NRRALMRFVTSVKSGSD-YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDL- 217 (312)
T ss_dssp GGGB-----CHHHHHHHHHHHHTTCS-CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGG-
T ss_pred ChHH-----HHHHHHHHHHHhCCCcc-cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHh-
Confidence 1100 00112223333322221 11124699999999999999999999999999999998622 112222
Q ss_pred ccCCCCeEEEEEecCchhH-Hh-cCeEEEEeCCE
Q 017091 317 NDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGR 348 (377)
Q Consensus 317 ~~~~~g~tvi~itH~l~~~-~~-~d~v~~l~~G~ 348 (377)
.+ .+|+|+|+.+.. .. ++|.+.+.+|.
T Consensus 218 ----~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 218 ----FD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp ----CS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred ----cC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 23 458888888765 33 67776666653
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.90 E-value=7.7e-26 Score=219.64 Aligned_cols=194 Identities=16% Similarity=0.140 Sum_probs=141.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC-------CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-------~~~ 203 (377)
.++++++++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++... ...
T Consensus 45 ~i~~~~l~~~~~tg--~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFILG--VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECCS--CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCCC--CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 58899999999732 4699999 9999999999999999999999999999999999999998865211 111
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc---CCCCCChHHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV---DDDLLSGGQKQRIAI 280 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~LSgGq~QRv~i 280 (377)
..+++.+.+++|... +. .+++..+.....+.++.... +.+... ....||+|| ||+++
T Consensus 122 ~~~~~~v~~~~~~~~----~~-------------~~r~~~~~~~~~~ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----PA-------------LERMKAAFTATTIAEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHTTEEEEEECTTS----CH-------------HHHHHHHHHHHHHHHHHHTT--TCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhceEEEEECCCC----CH-------------HHHHHHHHHHHHHHHHHHhc--cccHHHHHhhHHHHHHHH-HHHHH
Confidence 123344566665321 11 12222222222333332221 211111 124689999 99999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCe-----EEEEEecCchhHHhcCeEEEEeCCEEEEEcCh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~-----tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~ 355 (377)
| +.+|++ |+|||+.....+.++++++.+. +.|. ||+++|||++ ...||++++|.+|+|+.++++
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~-~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPA-PKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEEC-SSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCC-CCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCH
Confidence 9 688887 9999999999999999888541 2477 9999999999 445999999999999999988
Q ss_pred HHH
Q 017091 356 AEL 358 (377)
Q Consensus 356 ~~l 358 (377)
+++
T Consensus 251 ~~~ 253 (347)
T 2obl_A 251 AEE 253 (347)
T ss_dssp HTT
T ss_pred HHc
Confidence 765
No 83
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.90 E-value=6.7e-24 Score=230.77 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=123.3
Q ss_pred cEEEEE-----EEEEcCCCCCCCceeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 131 HVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 131 ~i~~~~-----v~~~y~~~~~~~vL~~isl~i~~-------Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
.|+++| |++.|++. ..+++|++|++++ |++++|+||||||||||+|++ |++.+
T Consensus 750 ~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred eEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 599999 99999432 3699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhcceE-EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 199 TDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 199 ~~~~~~~~r~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..++| ||||++. ..++.|+|.... ++.+.+.. + ...+|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~ri----------------g~~d~~~~---~------~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTRL----------------GASDRIMS---G------ESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEEC----------------C------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHHc----------------CCHHHHhh---c------hhhhHHHHHH-
Confidence 23566 9999873 567777764211 11111110 1 1346777665
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHH-HHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE--EEc
Q 017091 278 IAIARAILRDPAILLLDEATSALDSES-EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVG 353 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~-~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~--~~g 353 (377)
+++|++++.+|+++||||||+|+|+.. ...+++.++.+.+. .|+++|++||+++.+.. +|++.++ +|++. +.|
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~--~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET--IKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT--SCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 999999999999999999999999987 45578888888642 37899999999999876 8998887 58877 445
Q ss_pred Ch
Q 017091 354 NH 355 (377)
Q Consensus 354 ~~ 355 (377)
.+
T Consensus 936 ~~ 937 (1022)
T 2o8b_B 936 EC 937 (1022)
T ss_dssp --
T ss_pred Cc
Confidence 44
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.90 E-value=4.6e-26 Score=233.20 Aligned_cols=167 Identities=12% Similarity=0.104 Sum_probs=120.9
Q ss_pred CCceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcccc
Q 017091 147 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 223 (377)
Q Consensus 147 ~~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~--l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t 223 (377)
.++|+++|| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|.+. .......++.+||++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 469999999 999999999999999999999999 7899999999999999873 112234456799999987521
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC-----
Q 017091 224 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS----- 298 (377)
Q Consensus 224 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts----- 298 (377)
+|+.+..... .. +..++++..++.++.++.+ ..|||| +|+++++||||+
T Consensus 101 --~~l~~~~~~~-~~-~~~~~l~~~~l~~~~~~~~---------~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 101 --GKLFILDASP-DP-EGQEVVGGFDLSALIERIN---------YAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp --TSEEEEECCC-CS-SCCSCCSSHHHHHHHHHHH---------HHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred --CcEEEEecCc-cc-chhhhhcccCHHHHHHHHH---------HHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 1111100000 00 0001112223333333332 236666 488999999998
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH---------Hh-cCeEEEEeC
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---------KA-VDRIVVIDD 346 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~---------~~-~d~v~~l~~ 346 (377)
+||+..++.+.++++.+++ .|.|||++||+++.+ .. ||+|++|++
T Consensus 155 ~lD~~~~~~l~~ll~~l~~---~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQ---IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHH---CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 4699999999999999875 389999999999874 55 999999998
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.89 E-value=9.3e-24 Score=200.37 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=121.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+. +...+++++..+.++..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999999988 786654332 445555555555544322 2223
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH-HHHHHHHHHHcCCCCEEEEeCcCC---C---
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ-KQRIAIARAILRDPAILLLDEATS---A--- 299 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq-~QRv~iAral~~~p~illlDEPts---~--- 299 (377)
++..+. ...++..+. +.++++..+..+.. ....+|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~---~~~~~~~~~-----~~~~l~~~~l~i~~--~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKREI---IENGKFDQW-----FDELFGNDTFHLYD--SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHHH---HHHTHHHHH-----HHHHHSSSCEEEEC--CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccCC---CCHHHHHHH-----HHHHhccCCEEEEC--CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 333210 011111111 12222222211110 114589999 67777 999999999999999999 5
Q ss_pred CCH-HHHHHHHHHHHHhhccCCCCeEEEEEecCc--h--------------------hHH-hcCeEEEEeCCEE
Q 017091 300 LDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL--S--------------------TIK-AVDRIVVIDDGRI 349 (377)
Q Consensus 300 LD~-~~~~~i~~~l~~l~~~~~~g~tvi~itH~l--~--------------------~~~-~~d~v~~l~~G~i 349 (377)
+|+ .....+.+.|+++.++ .|.|||++||+. + .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~--~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKS--TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHH--HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHH--hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 5667788888888653 488999999995 4 555 4999999998875
No 86
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.88 E-value=3.1e-22 Score=193.90 Aligned_cols=75 Identities=27% Similarity=0.441 Sum_probs=67.3
Q ss_pred CCCChHHHH------HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 268 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 268 ~~LSgGq~Q------Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
..||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++.+ .|.|||+||||.+....||++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEEChHHHHHhCCEE
Confidence 469999999 67888999999999999999999999999999999998854 367999999997766679999
Q ss_pred EEEe
Q 017091 342 VVID 345 (377)
Q Consensus 342 ~~l~ 345 (377)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.88 E-value=8.2e-23 Score=208.73 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=69.8
Q ss_pred CC-ChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEe
Q 017091 269 LL-SGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 345 (377)
Q Consensus 269 ~L-SgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~ 345 (377)
.| ||||||||+|||||+.+| ++|||||||+|||+.+...+.+.|+++.+ |.|||+|||+++.+..||++++|+
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~----~~~vi~itH~~~~~~~~d~~~~~~ 471 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD----TRQVLVVTHLAQIAARAHHHYKVE 471 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH----HSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHHHHHhCCEEEEEe
Confidence 46 999999999999999999 99999999999999999999999999853 689999999999888899999996
Q ss_pred CC
Q 017091 346 DG 347 (377)
Q Consensus 346 ~G 347 (377)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 88
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=3.5e-23 Score=221.88 Aligned_cols=164 Identities=25% Similarity=0.324 Sum_probs=119.5
Q ss_pred HHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC----CC--CCCHHHHHHHHHHcC
Q 017091 176 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC----PK--DVKNEDIEWAAKQAY 249 (377)
Q Consensus 176 Ll~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~----~~--~~~~~~~~~~~~~~~ 249 (377)
...|..+.++|.+|+|.++|+++..+. .+++.+|+.+.. .. ...........+ .
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~------------------~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~ 443 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFT------------------ELSISEELEFLKNLNLTEREREIVGELLKEIE--K 443 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHH------------------HSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH--H
T ss_pred chhcccccCChHhcCcEECCccHHHhh------------------hCCHHHHHHHHHhccCcHHHHHHHHhhHHHHH--H
Confidence 345556678899999999999874321 234444443210 00 001111111111 1
Q ss_pred HHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEE
Q 017091 250 VHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326 (377)
Q Consensus 250 l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p~--illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi 326 (377)
..+++..+..++.. .....+|||||||||+|||||+++|+ +|||||||++||+.....+++.|+++++ .|.|||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~---~G~Tvi 520 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD---LGNTVI 520 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT---TTCEEE
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh---cCCEEE
Confidence 23455555544332 22346899999999999999999887 9999999999999999999999999963 489999
Q ss_pred EEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcC
Q 017091 327 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 327 ~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~ 362 (377)
+||||++.+..||+|++| ++|++++.|+++++++..
T Consensus 521 vVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 521 VVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp EECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 999999998889999999 899999999999998754
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.87 E-value=1.1e-23 Score=193.63 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=114.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh--hCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~--gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
++++++++..|++-. .++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+.+++.+... ......+
T Consensus 6 ~~~~~~i~tg~~~lD--~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFD--ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA 79 (251)
T ss_dssp --CCCEECCSCTTTG--GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH
T ss_pred ccccceeecCCHhHH--HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH
Confidence 466777776664311 23333 79999999999999999999999999 7756778888887754221 1223345
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
.+++++|+...+ ..++.++...... .... . ..... ...+-++..+...+..-..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~---~~~~~-------------~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSVVG--LPSE------E---KFVLE-------------DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HcCCChHHHhhcCCEEEEEccccccc--cccc------c---ceecc-------------CcccHHHHHHHHHHHHHhhC
Confidence 688888875433 2344443322100 0000 0 00000 11344555555555555689
Q ss_pred CCEEEEeCcCCCCC-----HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH---------H-hc-CeEEEEe
Q 017091 288 PAILLLDEATSALD-----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---------K-AV-DRIVVID 345 (377)
Q Consensus 288 p~illlDEPts~LD-----~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~---------~-~~-d~v~~l~ 345 (377)
|+++++||||+++| +..++.+.++++.+++ .|+|||++||+++.+ . .| |+|++|+
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~---~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE---MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH---HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH---CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99999999999997 6677778888888864 489999999999887 4 47 9999995
No 90
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.86 E-value=1.6e-21 Score=209.97 Aligned_cols=168 Identities=12% Similarity=0.138 Sum_probs=118.8
Q ss_pred cEEEEEEEEEcCCC--CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH--------hhCCCCCCCeEEECCEeCCC
Q 017091 131 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--------LRLYEPSDGQIYIDGFPLTD 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l--------~gl~~p~~G~I~i~g~~i~~ 200 (377)
.|++++...-+-.. ....+++|++|++++|++++|+||||||||||+|++ .|.+-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 47787765444221 124689999999999999999999999999999999 44444432211
Q ss_pred CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 201 ~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
++.+. .+|. .++ +.+.+ . ..+|+|++++..+
T Consensus 702 ---------~~~~d---~i~~-------~ig------------------~~d~l---~---------~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 ---------VSIVD---CILA-------RVG------------------AGDSQ---L---------KGVSTFMAEMLET 732 (934)
T ss_dssp ---------EECCS---EEEE-------ECC---------------------------------------CHHHHHHHHH
T ss_pred ---------chHHH---HHHH-------hcC------------------chhhH---H---------HhHhhhHHHHHHH
Confidence 11100 0110 011 11101 0 2378888888888
Q ss_pred HHHH--cCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHH
Q 017091 281 ARAI--LRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 281 Aral--~~~p~illlDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~ 357 (377)
|+++ +.+|+++||||||+|+|+.....+ ..+++.+.++ .|+|+|++||+.+....||++..+++|++...++.++
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~--~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK--IGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT--TCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc--CCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 8888 999999999999999999988777 6666777542 4889999999988877899999999999987766554
Q ss_pred H
Q 017091 358 L 358 (377)
Q Consensus 358 l 358 (377)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 3
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.86 E-value=3.6e-23 Score=193.41 Aligned_cols=131 Identities=24% Similarity=0.322 Sum_probs=97.7
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 9999999999999999999999999999998 999999987653211 1122233221
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
. .+++. ..| |++|||||..+|++|++|||| |+.+..
T Consensus 79 --------------------~-----------~gl~~----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 --------------------E-----------VGEDT----KSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp --------------------E-----------BTTTB----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred --------------------H-----------hCCCH----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 0 01110 112 899999999999999999999 988765
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEe
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 345 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~ 345 (377)
.+ ++... .|.+|++++|+.+....|||+++|.
T Consensus 115 ~~---l~~~~----~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 115 TA---LRAAE----TGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HH---HHHHH----TTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HH---HHHHc----cCCEEEEEeCcchHHHHHHHHhhhc
Confidence 44 33332 4789999999988655678775553
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.86 E-value=1.1e-22 Score=208.21 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=113.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh-cCC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM-YGC 232 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~-~~~ 232 (377)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.|++|++. ..+.++.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 4489999999999999999999999999998874 53 11456666652 23334432 22
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCccc--ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH-----HH
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYET--LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-----SE 305 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~-----~~ 305 (377)
...++ +.. .++.. ...+..|||||+||+++||++..+|++||+| ||++||+. .+
T Consensus 333 ---~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 333 ---MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ---CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ---CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 11111 111 01111 1123569999999999999999999999999 99999999 89
Q ss_pred HHHHHHHHHhhccCCCCeEEEEEecCc----------hhHHh-cCeEEEEeCCE
Q 017091 306 HYVKGVLHALRNDCKTKRTVIVIAHRL----------STIKA-VDRIVVIDDGR 348 (377)
Q Consensus 306 ~~i~~~l~~l~~~~~~g~tvi~itH~l----------~~~~~-~d~v~~l~~G~ 348 (377)
+.+.++++.+++ .|.|+|++||+. ..+.. ||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~---~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQ---EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHH---TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHh---CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999988864 489999999999 66665 99999999886
No 93
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.85 E-value=2.5e-23 Score=192.34 Aligned_cols=170 Identities=11% Similarity=0.137 Sum_probs=104.3
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
+++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++.....|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 46999999999999999999999999999999999976 655554 2467899999996333579999
Q ss_pred HHhcCCCC-CCC-HHH--HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCH
Q 017091 227 NIMYGCPK-DVK-NED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302 (377)
Q Consensus 227 ni~~~~~~-~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~ 302 (377)
|+.+.... ... .+. ..... +.++.+...... ....||+||+||+++ ++++.+|+++|+|||....|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~------~~L~~l~~~~~~--~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMH------RTLKNIVEGKTV--EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHH------HHHHHHHTTCCE--EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hhhhhccCCCCCCcccccHHHHH------HHHHHHHCCCCe--ecccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 87643211 111 110 11111 111111111111 125699999999988 688999999999999888876
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEecCchhH-Hh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 303 ~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
. +.++ .+.+|+++||+...+ +. ++++ ++|+ +.+++.+
T Consensus 149 ~--------l~~~-----~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 149 E--------IRDM-----FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp H--------HHTT-----CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred H--------HHHh-----cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 3 2222 378999999974444 44 4444 6664 5666653
No 94
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.85 E-value=1.6e-22 Score=183.60 Aligned_cols=149 Identities=22% Similarity=0.222 Sum_probs=101.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-------CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
.|++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .. .+++++++|+..++..++.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996555 344778877542 11 2347778888777766888888
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH-------cCCCCEEEEeCcCCCCC
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-------LRDPAILLLDEATSALD 301 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral-------~~~p~illlDEPts~LD 301 (377)
.+.... .... +++.+..++++ ..+|+++++||||+.+|
T Consensus 95 ~~~~~~--~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAF--NSNH---------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECC--SHHH---------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecC--ChHH---------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 764221 1111 11112222222 35899999999999999
Q ss_pred HH-------H-----HHHHHHHHHHhhccCCCCeEEEEEecCch----hHHh-cCeEEEEeCC
Q 017091 302 SE-------S-----EHYVKGVLHALRNDCKTKRTVIVIAHRLS----TIKA-VDRIVVIDDG 347 (377)
Q Consensus 302 ~~-------~-----~~~i~~~l~~l~~~~~~g~tvi~itH~l~----~~~~-~d~v~~l~~G 347 (377)
+. . ...+.+.|.++.++ .|.|||++||..+ .+.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~--~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHH--CCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 84 2 12566666666543 4899999999554 4765 8999999875
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.85 E-value=4.7e-22 Score=210.42 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=110.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-CCCCeEEECCEeCCCCCHHHHhc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
+.|++++...-.-...+..+++|+||+ |++++|+||||||||||+|+|+|+.. |+.|.+. + . .+.
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p--a-----~~~ 614 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P--A-----EEA 614 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S--S-----SEE
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e--h-----hcc
Confidence 358888873322110124699999999 99999999999999999999999974 7788652 1 0 134
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--c
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--L 285 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~ 285 (377)
.+++++| +| ..++.||+.. .+|+|++|++.+|+++ +
T Consensus 615 ~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a 653 (765)
T 1ewq_A 615 HLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEA 653 (765)
T ss_dssp EECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHC
T ss_pred ceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhc
Confidence 6888877 44 3466555432 2689999999999999 9
Q ss_pred CCCCEEEEeCc---CCCCCHHHH-HHHHHHHHHhhccCCCCeEEEEEecCchhHHhc
Q 017091 286 RDPAILLLDEA---TSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 338 (377)
Q Consensus 286 ~~p~illlDEP---ts~LD~~~~-~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~ 338 (377)
.+|+++||||| |++||+.+. ..+.+.+.+ .|.|+|++||+.+....+
T Consensus 654 ~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~------~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 654 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHE------RRAYTLFATHYFELTALG 704 (765)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH------HTCEEEEECCCHHHHTCC
T ss_pred cCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh------CCCEEEEEeCCHHHHHhh
Confidence 99999999999 999999875 467777765 278999999998876543
No 96
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=5.7e-22 Score=210.94 Aligned_cols=181 Identities=20% Similarity=0.263 Sum_probs=129.0
Q ss_pred CCCCcHHHHHHHHhhC---------CCCCCCeEEECCEeCCC---CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 017091 168 LSGSGKSTFVNLLLRL---------YEPSDGQIYIDGFPLTD---LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 235 (377)
Q Consensus 168 ~nGsGKSTLl~~l~gl---------~~p~~G~I~i~g~~i~~---~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 235 (377)
.+..||+++.+.+... +.|.+|+|.++|+++.+ ++..+....+.-++|++... .+ +...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~-~~--~~~~~~---- 342 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPG-HA--ERVKNR---- 342 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSC-ST--TSSSSC----
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhc-cc--chhhcc----
Confidence 4567899999887763 56789999999998866 33333333333334433211 11 111121
Q ss_pred CCHHHHH-----HHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHH
Q 017091 236 VKNEDIE-----WAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHY 307 (377)
Q Consensus 236 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~ 307 (377)
.....+. +..++ +. .+..+..++.+ .....+|||||||||+||++|..+| ++|||||||++||+...+.
T Consensus 343 ~~~~~i~~~i~~ei~~r--l~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~ 419 (842)
T 2vf7_A 343 PEQAIALQRMAADLVKR--LD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA 419 (842)
T ss_dssp SSHHHHHHHHHHHHHHH--HH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred hhhHHHHHHHHHHHHHH--HH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence 1111111 12122 22 35555554322 2223689999999999999999999 5999999999999999999
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhc
Q 017091 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 361 (377)
Q Consensus 308 i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 361 (377)
+.+.|+++++ .|.|||+|+||++.+..||+|++| ++|+++..|+++++...
T Consensus 420 L~~~l~~L~~---~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 420 LLSALENLKR---GGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHHHHHHT---TTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHHHHHHH---cCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 9999999964 489999999999988779999999 79999999999998875
No 97
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.84 E-value=2.4e-21 Score=206.84 Aligned_cols=136 Identities=22% Similarity=0.379 Sum_probs=104.8
Q ss_pred ccccHHHHHhcCCCCCCCHHH-------HHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC--C
Q 017091 220 LQMDIKSNIMYGCPKDVKNED-------IEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP--A 289 (377)
Q Consensus 220 ~~~tv~eni~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p--~ 289 (377)
..+||.|++.|........++ +.+..++ + +++..+..++.+ .....+|||||+|||+||++|..+| +
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~R--l-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ 526 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDR--L-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGV 526 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHH--H-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--H-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCC
Confidence 467898988874222222211 1122222 2 345555554332 2234689999999999999999985 9
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhc
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 361 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 361 (377)
+|||||||++||+...+.+.+.|+++++ .|.|||+|+||++++..||+|++| ++|++++.|+++++...
T Consensus 527 llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 527 LYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp EEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999999999999999999964 589999999999998889999999 79999999999998764
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.84 E-value=6.2e-23 Score=195.71 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC-CCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
+||++.|++ +.++++++|+| +|+||||||||||++.|.|. ..|++| |.++|.++.. . .. .+.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEE
Confidence 478999975 36999999988 99999999999999999998 889999 9888877643 1 11 3568999
Q ss_pred ccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 017091 214 GQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 292 (377)
Q Consensus 214 ~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ill 292 (377)
+|+..++ ..|+.|+..++.... ..+......+. +.+..+..+ .++|||||||+.+|||++ +++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~-~~e~~~~l~~~--l~~~~~~~~---------~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAIN-CRDCFKTIISY--IDEQFERYL---------HDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTHHHH--HHHHHHHHH---------HHHTSSCCTTCCCCCCCE----EEE
T ss_pred ecCCCcccCcchhhhhhhhhhcC-cHHHHHHHHHH--HHHHHHHHH---------HHhCHHhhhhhhhhhhhh----eee
Confidence 9987665 678988877653211 00110011110 112222211 348999999999999986 999
Q ss_pred EeCcCCC-CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 017091 293 LDEATSA-LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 293 lDEPts~-LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~ 333 (377)
+||||++ ||+... +.++++.+ ..+.++|+.+||+.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~--~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHN--KVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTT--TSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHh--cCCEEEEEEeCCCC
Confidence 9999985 999863 45555543 24789999999984
No 99
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.84 E-value=4.2e-21 Score=191.68 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.|.++.+ .+.++|+|||+...+..||+++++
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~~ii~th~~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHhCCEEEEE
Confidence 39999999999999999 68999999999999999999999999998742 367999999998777779999998
Q ss_pred e
Q 017091 345 D 345 (377)
Q Consensus 345 ~ 345 (377)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 100
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.83 E-value=1.7e-23 Score=217.43 Aligned_cols=191 Identities=17% Similarity=0.227 Sum_probs=120.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEECCEeCC
Q 017091 131 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLT 199 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~i----------sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~ 199 (377)
.++++|+++.|++. .+++|+.+ +++++. +||+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999642 12455554 366665 999999999999999999999988 8999999999863
Q ss_pred C--CC-HHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 200 D--LD-IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 200 ~--~~-~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
. .+ ...+++.++|+||++.++ ..||++|+.+.. .. ...... .+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~----------~~---------~~~~~~---------~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ----------NA---------IAGEGM---------GIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH----------HH---------HHCSSS---------CCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH----------HH---------hcCCcc---------ccc---h
Confidence 1 11 234678899999999887 579999886520 00 000000 111 1
Q ss_pred HHHHHHHHHcCCCCEEEEeCc------CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH--------Hh----
Q 017091 276 QRIAIARAILRDPAILLLDEA------TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--------KA---- 337 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEP------ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~--------~~---- 337 (377)
+++.++.+....|+++|+||| |++||+..+..+.++++++.+. ..+.+++++||+++.. ..
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 334444455568999999999 9999999999999999996433 3478899999998632 22
Q ss_pred -cCeEEEEeCCEEEEEcChHH
Q 017091 338 -VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 338 -~d~v~~l~~G~i~~~g~~~~ 357 (377)
...|+|+.++.++..|+.++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTC
T ss_pred CCceEEEecchhhcCcccHHH
Confidence 24588999888887776543
No 101
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.83 E-value=6.2e-23 Score=182.75 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=108.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 239 (377)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.... ..+++++||++|+.. ++ ++++... .....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~~---g~-~~~l~~~-~~~~~-- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTLS---GT-RGPLSRV-GLEPP-- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEETT---SC-EEEEEEC-CCCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEecc---cc-eehhhcc-cccCC--
Confidence 78999999999999999999999999 999 99999887543 245788999999862 11 1122110 00000
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHH-HHHH---HHcCCCCEEEEeC--cCCCCCHHHHHHHHHH
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRI-AIAR---AILRDPAILLLDE--ATSALDSESEHYVKGV 311 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv-~iAr---al~~~p~illlDE--Pts~LD~~~~~~i~~~ 311 (377)
+......++ ...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 000001122 135899999998 5555 6899999999999 8999999876666666
Q ss_pred HHHhhccCCCCeEEEE----EecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 312 LHALRNDCKTKRTVIV----IAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 312 l~~l~~~~~~g~tvi~----itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
+.. ..++|+ |+||.+ ...+|+|..+++|+|++..
T Consensus 132 l~~-------~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 LST-------PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHC-------SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HhC-------CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 552 234443 349875 3346777777888888754
No 102
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.82 E-value=3.5e-20 Score=158.42 Aligned_cols=79 Identities=25% Similarity=0.433 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHH------HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 268 DLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 268 ~~LSgGq~QRv~iA------ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
.+||||||||++|| |||+.+|+++||||||++||+.+...+.+.+.++.+ .|.|||+|||+++....||++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc---cCCEEEEEEChHHHHHhCCEE
Confidence 57999999999876 999999999999999999999999999999998854 378999999999655569999
Q ss_pred EEE--eCCEE
Q 017091 342 VVI--DDGRI 349 (377)
Q Consensus 342 ~~l--~~G~i 349 (377)
++| ++|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45643
No 103
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.82 E-value=5.1e-20 Score=197.25 Aligned_cols=137 Identities=28% Similarity=0.384 Sum_probs=105.4
Q ss_pred CccccHHHHHhcCCCCCCCHHH--H-----HHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCC--C
Q 017091 219 LLQMDIKSNIMYGCPKDVKNED--I-----EWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRD--P 288 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~--p 288 (377)
++.+||.|++.|........++ + .+..++ + +++..+..++.+ .....+|||||||||+||++|..+ |
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~R--l-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~ 542 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSR--L-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVG 542 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHH--H-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHH--H-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCC
Confidence 3468999999885332223311 1 111112 2 234444443322 222368999999999999999998 5
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhc
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 361 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 361 (377)
++|||||||++||+...+.+.+.|+++++ .|.|||+|+||++++..||+|++| ++|++++.|+++++...
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRD---LGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHH---cCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 99999999999999999999999999964 489999999999998889999999 79999999999999875
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.82 E-value=1.4e-21 Score=190.07 Aligned_cols=164 Identities=23% Similarity=0.231 Sum_probs=111.6
Q ss_pred Cceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCC----Ce-EEECCEeCCCCCHHHHhcceEEEccCCcC
Q 017091 148 PILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD----GQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQL 219 (377)
Q Consensus 148 ~vL~~i-sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 219 (377)
+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |+ |++++.+. . .++++++++|.+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~----~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F----RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C----CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C----CHHHHHHHHHHcCC
Confidence 356666 6899999999999999999999999999998 6776 67 89998764 1 13568889999888
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-------CCCCEEE
Q 017091 220 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-------RDPAILL 292 (377)
Q Consensus 220 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-------~~p~ill 292 (377)
+..++.+|+.+... .. |.+|+|++.++++++ .+|+++|
T Consensus 192 ~~~~v~~ni~~~~~--~~---------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 192 DPDEVLKHIYVARA--FN---------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp CHHHHGGGEEEEEC--CS---------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CHHHHhhCEEEEec--CC---------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 76788999877421 11 233445555555554 7899999
Q ss_pred EeCcCCCCCHHH------------HHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 293 LDEATSALDSES------------EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 293 lDEPts~LD~~~------------~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
+||||+++|+.. ..+++..|.++.++ .+.|||+++|....... ++.......|++++++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~--~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEECC---------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH--cCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999999999862 24455555555443 48899999998775532 33445555666555444
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.82 E-value=2.2e-21 Score=175.95 Aligned_cols=167 Identities=10% Similarity=0.024 Sum_probs=116.8
Q ss_pred CCceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh---cceEEEccCCcCccc
Q 017091 147 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR---EKIGFVGQEPQLLQM 222 (377)
Q Consensus 147 ~~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~l~~~ 222 (377)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+. +...++ ..+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK-- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC--
Confidence 357899988 8999999999999999999999999998888889988866543 222222 2344444432110
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCCCC
Q 017091 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL 300 (377)
Q Consensus 223 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--illlDEPts~L 300 (377)
++.+- . .... . .. + .+ . ....|.++.++...+.+...+|+ ++++||||+.+
T Consensus 84 ----~~~~~-~-~~~~-~-------------~~--~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 84 ----KLIII-D-ALMK-E-------------KE--D-QW---S-LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp ----TEEEE-E-CCC--------------------C-TT---B-CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred ----CEEEE-e-cccc-c-------------cC--c-ee---e-ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 11110 0 0000 0 00 0 00 0 02359999999888888888999 99999999888
Q ss_pred --CHHHHHHHHHHHHHhhccCCCCeEEEEEecCc--------hhHHh-cCeEEEEeCC
Q 017091 301 --DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL--------STIKA-VDRIVVIDDG 347 (377)
Q Consensus 301 --D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l--------~~~~~-~d~v~~l~~G 347 (377)
|+.....+.+.|+++.++ .|.|||++||+. ..+.. ||+|++|+..
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNK--WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 998888999999888653 489999999999 44655 9999999854
No 106
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.82 E-value=3.9e-21 Score=206.32 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=104.1
Q ss_pred cEEEEEEEEEc-----CCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHY-----PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y-----~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~ 205 (377)
.|.+++...-. +. .+..|++|+||++++|++++|+||||||||||+|+++++.-..
T Consensus 640 ~i~i~~~rHP~le~~~~~-~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGE-QDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCS-CSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred cEEEEeccchhhhhhhcc-CCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 47777654322 11 1347999999999999999999999999999999997642110
Q ss_pred HhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 206 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
+.-.++|++...+ .+.+.+.- ..++.+.+.. +...+|+|++|++.|+++ +
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i~~----------------~ig~~d~l~~---------~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGIFT----------------RMGAADNIYK---------GRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEEEE----------------EC-------------------CCHHHHHHHHHHHHHH-C
T ss_pred --hcCccccchhhhh--hHHHHHHH----------------hCChHHHHHH---------hHHHhhHHHHHHHHHHHh-c
Confidence 0011233221100 00000100 0011111111 014689999999999999 8
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchhHHhcC
Q 017091 286 RDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~-~~l~~l~~~~~~g~tvi~itH~l~~~~~~d 339 (377)
.+|+++||||||+|||+.....+. .+++.+.++ .|.|+|++||+++....||
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~--~g~tvl~vTH~~el~~l~~ 803 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD--VKSLTLFVTHYPPVCELEK 803 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh--cCCeEEEEeCcHHHHHHHh
Confidence 999999999999999999888887 667776542 4889999999998765444
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.81 E-value=6.4e-22 Score=188.77 Aligned_cols=166 Identities=19% Similarity=0.127 Sum_probs=110.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHH--hcceEEEccCCcCc-cccHHHHHhcC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL--REKIGFVGQEPQLL-QMDIKSNIMYG 231 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~l~-~~tv~eni~~~ 231 (377)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+..... ..+ +..++|++|++.++ ..++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999865431 122 45699999999877 46889998653
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCCCCCHHHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVK 309 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--illlDEPts~LD~~~~~~i~ 309 (377)
.. ..... .+++. + |... .....++..++||++||||++.+|+ ++.|| |+++. .+.
T Consensus 181 ~~------------~~~d~-~llDt-~-G~~~-~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~ 237 (304)
T 1rj9_A 181 KA------------RGYDL-LFVDT-A-GRLH-TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGL 237 (304)
T ss_dssp HH------------HTCSE-EEECC-C-CCCT-TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHH
T ss_pred Hh------------CCCCE-EEecC-C-CCCC-chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHH
Confidence 10 00000 00111 1 1100 0001246667999999999999999 45555 44444 444
Q ss_pred HHHHHhhccCCCCeEEEEEecCchhHHh----------cCeEEEEeCCEE
Q 017091 310 GVLHALRNDCKTKRTVIVIAHRLSTIKA----------VDRIVVIDDGRI 349 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~itH~l~~~~~----------~d~v~~l~~G~i 349 (377)
+.++++.+. .|.|+|++||+.+..+. --.|.++-.|+-
T Consensus 238 ~~~~~~~~~--~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 238 EQAKKFHEA--VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEG 285 (304)
T ss_dssp HHHHHHHHH--HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHHHHH--cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCC
Confidence 555555432 37899999998544211 135677776653
No 108
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.81 E-value=2.5e-23 Score=187.31 Aligned_cols=143 Identities=12% Similarity=0.110 Sum_probs=105.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc---cccHHHHHhcCC-
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL---QMDIKSNIMYGC- 232 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~---~~tv~eni~~~~- 232 (377)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..|+.+|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 589999999776 357888876532
Q ss_pred -CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH----HHHHHHHHHHcCCCCEEEEeCcCCC-------C
Q 017091 233 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ----KQRIAIARAILRDPAILLLDEATSA-------L 300 (377)
Q Consensus 233 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq----~QRv~iAral~~~p~illlDEPts~-------L 300 (377)
+.....+.+.+.++..++.+. .. .....+|+|| +||+++||+++.+|+++++||||++ |
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~-------~~--~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLP-------VE--MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCC-------EE--ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCC-------cC--CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 111223334444333221111 11 1224689996 5789999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 017091 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332 (377)
Q Consensus 301 D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l 332 (377)
|+..+..+.+.+.+..++ +|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~--~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLE--RGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 999999899888765322 478999999984
No 109
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.81 E-value=3e-24 Score=209.80 Aligned_cols=228 Identities=13% Similarity=0.115 Sum_probs=150.6
Q ss_pred HHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-ccccc
Q 017091 54 AVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGH 131 (377)
Q Consensus 54 ~~~~g~~~v~~-g~lt~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~ 131 (377)
+.+.|++.+.. +.+|.+.+.+|+.+...+..| .+......+..+..+..|+..++ +|............ .....
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR 126 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence 34567776665 889999999988877766554 22222222333344556777666 33321110001110 01122
Q ss_pred E---------EEEEEEEE---cCCCCCCCce---------eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe
Q 017091 132 V---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190 (377)
Q Consensus 132 i---------~~~~v~~~---y~~~~~~~vL---------~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~ 190 (377)
+ +++||+|+ |+.. +.++| +++||++++|++++|+||||||||||+++|+|+++|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 4 78899998 8531 12355 9999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcceEEEc-cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCC
Q 017091 191 IYIDGFPLTDLDIRWLREKIGFVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 269 (377)
Q Consensus 191 I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (377)
|.++|. ..+.....++.++|++ |++.+ +
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~----------------------------------------~--------- 234 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKE----------------------------------------E--------- 234 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC-------------------------------------------------------
T ss_pred EEECCc--cccCccccCCEEEEeecCcccc----------------------------------------c---------
Confidence 999985 2333333567789998 65421 0
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCC
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 347 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G 347 (377)
++++..+|-.|++++..+|+.+++|||.. .++.+.++.+.. ...|++.++|..+....+||+..|..+
T Consensus 235 ~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~---g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 235 ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS---GHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp ----CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT---TCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc---CCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 12333478888889989999999999986 234556666642 234789999997755568888877765
No 110
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.80 E-value=2.5e-23 Score=203.58 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=127.0
Q ss_pred ceeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHhhCCCCCC----CeEEEC----CEeCCCCCHHHHhcceEEEccCCc
Q 017091 149 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQIYID----GFPLTDLDIRWLREKIGFVGQEPQ 218 (377)
Q Consensus 149 vL~~isl~i~~--Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~----G~I~i~----g~~i~~~~~~~~r~~i~~v~Q~~~ 218 (377)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|.++ |.++ ..+..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 999873 5544 3334444 45999999988
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-CCCCEEEEeC--
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDPAILLLDE-- 295 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-~~p~illlDE-- 295 (377)
+|..|+.||+.++.. .... . . . ..+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~---~~~~--~---~------~-------------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT---DFIT--T---Q------A-------------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHHCSSEEEESS---CHHH--H---H------H-------------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHHhccCCEEEEeC---CchH--H---H------H-------------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 888899999987532 1100 0 0 0 013567788888888874 6999999999
Q ss_pred -cC------CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHh
Q 017091 296 -AT------SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 296 -Pt------s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|+ +++|+..+..+.+.|.++.++ .+.++|+++|.-.....++++..+++ ++..++++++.
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 65 589999999999999876532 36799999976333233666666543 34455555553
No 111
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.80 E-value=2e-22 Score=176.60 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCC---HHHHh-cceE----EEccCCcCccccHHHHHh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLD---IRWLR-EKIG----FVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~l~~~tv~eni~ 229 (377)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ ...+| +++| +++|++.+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 899999999876654 34566 4678 899988776 111
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHh-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE-------EEeCcCCC--
Q 017091 230 YGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL-------LLDEATSA-- 299 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il-------llDEPts~-- 299 (377)
+ .. +. .+++.+++.. +| ++++.+++. |||||+||++||||++++|++. +=|.|..+
T Consensus 77 -~-----~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -V-----SE-EE-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -C-----CH-HH-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -C-----Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 1 11 11 5688999998 99 999998865 9999999999999999999873 22444322
Q ss_pred -CCHHHHHHHHHHHHHhh
Q 017091 300 -LDSESEHYVKGVLHALR 316 (377)
Q Consensus 300 -LD~~~~~~i~~~l~~l~ 316 (377)
+|....+.+.+.+.+..
T Consensus 143 ~f~~~~~~~~a~~i~~~~ 160 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLL 160 (171)
T ss_dssp EECTTCHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHH
Confidence 33344456667665543
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=5.6e-22 Score=177.57 Aligned_cols=170 Identities=20% Similarity=0.230 Sum_probs=96.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC-----CCCCCeEEEC-------CEeC
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYID-------GFPL 198 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-----~p~~G~I~i~-------g~~i 198 (377)
.|+++|++|.|+. +++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|.+.+. +..+
T Consensus 3 ~l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 4789999999962 47888 899999999999999999999999999998 8888877542 2222
Q ss_pred C---CCC--------HHHHhcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC
Q 017091 199 T---DLD--------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 266 (377)
Q Consensus 199 ~---~~~--------~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (377)
. ... ...+++.+++++|....+. ..+..++..+ ..... .+ +.+++........-...
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~----~~~~~-~~------~~~~~~~~~~~~~~v~n 145 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP----LKDLD-QQ------MIEWAVDSNIAVLVLLT 145 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC----CCHHH-HH------HHHHHHHTTCCEEEEEE
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC----CchhH-HH------HHHHHHHcCCCeEEEEe
Confidence 1 110 0122333444444332221 1221122211 11111 01 11222221111000011
Q ss_pred -CCCCChHHHHH-HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 267 -DDLLSGGQKQR-IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 267 -~~~LSgGq~QR-v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
...+|+||+|| +..+++++.+|+++++|||||++|+....++.+.|.++..
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 24689999999 8999999999999999999999999999999999988753
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.79 E-value=3.4e-20 Score=180.48 Aligned_cols=146 Identities=23% Similarity=0.257 Sum_probs=102.0
Q ss_pred EEEEEEcCCCCCCCceeeeeE-------EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHH
Q 017091 135 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl-------~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~ 206 (377)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 4566666432 2456777776 78899999999999999999999999999987 566654443332 21 1
Q ss_pred hcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 207 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+...++++|...... . ++-.+ +|||||..
T Consensus 167 ~~~~~~v~q~~~~~~-------------~----------------------------------~~~~~----~La~aL~~ 195 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD-------------T----------------------------------LGFSE----ALRSALRE 195 (356)
T ss_dssp CCSSSEEEEEEBTTT-------------B----------------------------------SCHHH----HHHHHTTS
T ss_pred hccccceeeeeeccc-------------c----------------------------------CCHHH----HHHHHhhh
Confidence 233456665432110 0 01111 99999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+|++|++|||| |+++.+.+.+ +.. .|.||++++|+.+.+..+||++.|..
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~----~~~---~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALT----AAE---TGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHH----HHH---TTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred CcCEEecCCCC---CHHHHHHHHH----HHh---cCCEEEEEEccChHHHHHHHHhhhcC
Confidence 99999999999 7666443333 322 48899999999998877999888744
No 114
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.78 E-value=8.3e-20 Score=194.24 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=102.7
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv 224 (377)
..+++|+||+ ++|++++|+||||||||||+|+|+|+..+ ..|. .+.. .+..+++++| +| ..++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hcccceeHHH---HHhhCCH
Confidence 4699999999 99999999999999999999999997532 2231 1111 1234666665 34 3455
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
.||+..+. ..+|+++++ ++.+...+.+|+++|||||++|+|+..
T Consensus 660 ~d~l~~~~-----------------------------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 660 ADDLASGR-----------------------------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ---------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred HHHHHhhh-----------------------------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 55543210 235666654 444555689999999999999999876
Q ss_pred HHHH-HHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEE
Q 017091 305 EHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350 (377)
Q Consensus 305 ~~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~ 350 (377)
...+ ...++.+.+. .|.++|++||+++....||++..+++|++.
T Consensus 704 ~~~i~~~ll~~l~~~--~g~~vl~~TH~~el~~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 704 GLSLAWACAENLANK--IKALTLFATHYFELTQLPEKMEGVANVHLD 748 (800)
T ss_dssp HHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGHHHHSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHhc--cCCeEEEEeCCHHHHHHhhhhhceEEEEEE
Confidence 6664 6777777542 378999999999877667776555555554
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.7e-20 Score=186.10 Aligned_cols=164 Identities=20% Similarity=0.148 Sum_probs=99.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +.+++++||+| +|+||||||||||+++|+|...|..| .+|.++... ....+..+
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp ----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred cEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 5899999999975 36999999998 99999999999999999999886665 233322211 11123568
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
++++|++.++ ..|+.||+.++... .....+.. +.++++. .++.+++||++||||++.+|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~--~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAV--DNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhc--cchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999988776 78999998876321 11111111 1122221 256777899999999999999
Q ss_pred ---EEEEeCcC-CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 290 ---ILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 290 ---illlDEPt-s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
+|++|||| ++||+... +.++.+. .+.++|+|.|..+.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~----~~lk~L~----~~v~iIlVinK~Dl 179 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI----EFMKRLH----EKVNIIPLIAKADT 179 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH----HHHHHHT----TTSEEEEEEESTTS
T ss_pred eeEEEEEecCcccCCCHHHH----HHHHHHh----ccCcEEEEEEcccC
Confidence 99999999 69998763 3445553 25678888776554
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.74 E-value=1.3e-19 Score=164.99 Aligned_cols=144 Identities=11% Similarity=0.095 Sum_probs=100.6
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccH----HH
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDI----KS 226 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv----~e 226 (377)
--..++|++++|+||||||||||+++|+|+++| .+|.|.+.+.+... ..+..++|+||++.+|. .++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346899999999999999999999999999986 78999998876532 12467999999988773 455 45
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
|+.+...... .| +++ ++.++..++++||| ||+.+..
T Consensus 86 ~~~~~~~~yg---------------------------------~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 86 HAEVFGNYYG---------------------------------TS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEEETTEEEE---------------------------------EE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHHhccCC---------------------------------CC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 5443210000 01 111 23334457999999 9999998
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
.+.+.+. .+.||+++||+++.+.. |+ +.+| .++++++..
T Consensus 122 ~i~~~l~-------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 122 QIRQKMP-------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHCT-------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHcc-------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 8887654 37899999999998865 32 5667 567777653
No 117
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.74 E-value=2e-18 Score=162.40 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=96.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH-hcCCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPK 234 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni-~~~~~~ 234 (377)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..+... ..+...+ .++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 478999999999999999999999998664 5766 34544321 2357787665432 1122222 1221
Q ss_pred CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC--CCCHHHH---HHHH
Q 017091 235 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS--ALDSESE---HYVK 309 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts--~LD~~~~---~~i~ 309 (377)
...........+...+.+ ........||+||+|++ ++++.+|+++|+||||+ ++|+... ..++
T Consensus 93 ~~~~~~~~~~~~~l~l~~---------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQP---------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp TSCHHHHHHHHHHEEECC---------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred hcChhhhhhccCceEEee---------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 122222222222222111 01112357999998865 68889999999999999 9998544 6777
Q ss_pred HHHHHhhccCCCCeEEEEEecCchhH
Q 017091 310 GVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
+.|+++.++ .|+|||+++|+....
T Consensus 161 ~~L~~l~~~--~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAAD--TGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHH--HCCEEEEEEEC----
T ss_pred HHHHHHHHH--cCCEEEEEecCCCcc
Confidence 778777543 488999999998654
No 118
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.73 E-value=1e-20 Score=169.37 Aligned_cols=158 Identities=19% Similarity=0.287 Sum_probs=109.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 224 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 224 (377)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+++++..++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999886 78898 588887777777777665 68888888899
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH-HHcCCCCEEEEeCcCCCCCHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR-AILRDPAILLLDEATSALDSE 303 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr-al~~~p~illlDEPts~LD~~ 303 (377)
.+|+ +|. +.+++.++++..... ..+..+.|+.+... +++ .|| +++.+|++++|||||+++|..
T Consensus 77 ~~n~-~g~----~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~---------~~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNL-YGT----SKEAVRAVQAMNRIC-VLDVDLQGVRSIKK---------TDL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEE-EEE----EHHHHHHHHHTTCEE-EEECCHHHHHHHTT---------SSC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCcc-CCC----CHHHHHHHHHcCCcE-EEECCHHHHHHHHh---------cCC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 8887 652 345555555431100 00000111111110 012 566 788999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 304 ~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+++.+.+.|....++ +.++| +. ..+|+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~-------~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD-------MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH-------TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH-------HHHhh--cc-CCceEEEECCC
Confidence 999999988877532 24567 33 56999988864
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=5e-19 Score=175.08 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=115.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.+++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 366777 888964 35 9999999999999 9999999999999999999984 3454443322233355
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHH----HHHHHHHcCHHHHHHhC-------CCCccccc-------C--C
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNED----IEWAAKQAYVHEFILSL-------PCGYETLV-------D--D 267 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~-------~~~~~~~~-------~--~ 267 (377)
.++|++|++.++ ..|+.||+.++.. ..... +...++ ..+.+++... +...++.+ . .
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ--INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc--cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 799999999887 6899999998743 22211 111111 1223333332 11112221 1 1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH-hhccCCCCeEEEEEecC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA-LRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~-l~~~~~~g~tvi~itH~ 331 (377)
..|+-.+ +.++++|..+++++++|||+..|.+.....+.+.+++ +. ..|.+|+.++.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~---~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV---SNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB---TTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH---HcCCcEEecCCC
Confidence 2466665 8999999999999999999999999888888888876 64 358899998865
No 120
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=2.2e-17 Score=144.63 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 268 DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
..||||||||++|||+|+ ++|+++||||||++||+.+...+.+.|+++. .+.++|+|||+...+..||+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~----~~~~~ivith~~~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS----KESQFIVITLRDVMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc----cCCEEEEEEecHHHHHhCCEEEE
Confidence 469999999999999997 4579999999999999999999999999884 34689999999888778999985
Q ss_pred E--eCCEE
Q 017091 344 I--DDGRI 349 (377)
Q Consensus 344 l--~~G~i 349 (377)
+ ++|..
T Consensus 139 v~~~~g~s 146 (173)
T 3kta_B 139 VSMRDGVS 146 (173)
T ss_dssp EEEETTEE
T ss_pred EEecCCEE
Confidence 5 56754
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.70 E-value=2.3e-18 Score=168.74 Aligned_cols=128 Identities=23% Similarity=0.338 Sum_probs=95.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~--------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE--------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE---------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee---------
Confidence 3566665 7899999999999999999999999999998 899988776653 2 2456788998841
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
++ ++ + ..+ +.+|+++|..+|+++++|||+ |+++.
T Consensus 191 ---~g------------------~~------~---------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~- 224 (372)
T 2ewv_A 191 ---VG------------------ED------T---------KSF------ADALRAALREDPDVIFVGEMR---DLETV- 224 (372)
T ss_dssp ---BT------------------TT------B---------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHH-
T ss_pred ---cC------------------CC------H---------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHH-
Confidence 11 00 0 124 469999999999999999999 77653
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEE
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 342 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~ 342 (377)
...++.. ..|.+++.++|+.+....+||++
T Consensus 225 --~~~l~~~----~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 225 --ETALRAA----ETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp --HHHHHHH----TTTCEEEECCCCCSHHHHHHHHH
T ss_pred --HHHHHHH----hcCCEEEEEECcchHHHHHHHHH
Confidence 3344443 24789999999977444466653
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.70 E-value=8.4e-17 Score=144.76 Aligned_cols=153 Identities=16% Similarity=0.095 Sum_probs=97.5
Q ss_pred CceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
+.|+++.. .+++|++++|+||||||||||++.+++ ++..+.++++..+ ..+.. .+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHH
Confidence 46777765 799999999999999999999999999 3333333433321 01111 1111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH--HHHHHHHHHHcCC-CCEEEEeCcCCCCCHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ--KQRIAIARAILRD-PAILLLDEATSALDSE 303 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq--~QRv~iAral~~~-p~illlDEPts~LD~~ 303 (377)
..... ....+ ++.+.+. ...+|+++ +|+++.+|+++.+ |+++++||||+.+|+.
T Consensus 65 ~~~~~---~~~~~------------~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 65 MAETR---GLNPE------------EALSRFI--------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp HHHTT---TCCHH------------HHHHHEE--------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred HHHhc---CCChH------------HHhhcEE--------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 11100 01111 1111111 01245553 6789999999986 9999999999999974
Q ss_pred HH--------HHHHHHHHHhhccCCCCeEEEEEecCch-------------hHHh-cCeEEEEeCC
Q 017091 304 SE--------HYVKGVLHALRNDCKTKRTVIVIAHRLS-------------TIKA-VDRIVVIDDG 347 (377)
Q Consensus 304 ~~--------~~i~~~l~~l~~~~~~g~tvi~itH~l~-------------~~~~-~d~v~~l~~G 347 (377)
.. ..+.+.|+++.++ .+.|+|+++|... .+.. ||+|++|+..
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~--~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARK--HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHH--HTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 32 3344456666443 3789999999865 4554 9999999754
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.67 E-value=5.8e-19 Score=169.46 Aligned_cols=151 Identities=18% Similarity=0.157 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC--------CCCCCeEEECCEeCCCCC---------------HHHHhcceEEE---c
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY--------EPSDGQIYIDGFPLTDLD---------------IRWLREKIGFV---G 214 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~--------~p~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~ 214 (377)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999986542 23456678888 6
Q ss_pred cCCcC-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCC-CCcccccCC-------CCCChHHHHHHHHHHHHc
Q 017091 215 QEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP-CGYETLVDD-------DLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 215 Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~-------~~LSgGq~QRv~iAral~ 285 (377)
|++.+ +..++.||..++.+ ..+...... . .+.-...+ .+.-+.++. .+||+||+||+..+++++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p-----~~~~~~~~~-~-~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP-----GPIIQTFFS-H-EVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH-----HHHHHHHHH-S-HHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH-----HHHHHHHhc-C-ccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEE
Confidence 87764 57899998877532 111111100 0 00000000 011111110 148999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~ 333 (377)
.+|+++ ||| +.+.+.+++++ .+.||+++||+..
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~----~~~~ii~~sh~~~ 190 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN----ARAPVYTVTHGDI 190 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC----SSSCEEECCSSCC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC----CCCeEEEecccCC
Confidence 999987 998 56778887773 4789999999643
No 124
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.66 E-value=3.1e-19 Score=157.74 Aligned_cols=140 Identities=16% Similarity=0.066 Sum_probs=90.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC-
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK- 234 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~- 234 (377)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++.... ..++.++|++|++. ...++.+|+.+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78999999997653211 11234788888654 456888887542100
Q ss_pred --CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHH
Q 017091 235 --DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312 (377)
Q Consensus 235 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l 312 (377)
......+........+..+.. . ......+|+|++||+++||++.++|+++ +|+...+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~-~------~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPDWLPAFTA-L------ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp HHTSCEEEECSCCCTTTTHHHHT-T------CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred hccCCeEEEeccCcHHHHHHHHh-c------CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 000000000000001111110 0 0011359999999999999999999876 6887777777766
Q ss_pred HHh
Q 017091 313 HAL 315 (377)
Q Consensus 313 ~~l 315 (377)
..+
T Consensus 145 ~~l 147 (191)
T 1zp6_A 145 ADL 147 (191)
T ss_dssp TCC
T ss_pred hcc
Confidence 655
No 125
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.65 E-value=5.9e-20 Score=177.75 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=118.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~ 206 (377)
.|+++|+++.|+. ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ....
T Consensus 29 ~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~ 105 (337)
T 2qm8_A 29 LAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD 105 (337)
T ss_dssp HHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC
T ss_pred HHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHH
Confidence 4677788888853 25999999999999999999999999999999999999999999999998875322 1224
Q ss_pred hcceEEEccCCcCcc----------c---cHHHHHh-c---CCC------C--CCCHHHHHHH---------------HH
Q 017091 207 REKIGFVGQEPQLLQ----------M---DIKSNIM-Y---GCP------K--DVKNEDIEWA---------------AK 246 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~----------~---tv~eni~-~---~~~------~--~~~~~~~~~~---------------~~ 246 (377)
+.++++++|++.+|. + ++.|.+. + +.. . ......+.+. .+
T Consensus 106 ~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 106 KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred hhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence 667999999998773 1 1222220 0 000 0 0000000000 00
Q ss_pred --HcCHHHHHHhCCCC--cc-ccc-CCCCCChHHHHHHHHHHHHcC------CCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 017091 247 --QAYVHEFILSLPCG--YE-TLV-DDDLLSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHA 314 (377)
Q Consensus 247 --~~~l~~~~~~~~~~--~~-~~~-~~~~LSgGq~QRv~iAral~~------~p~illlDEPts~LD~~~~~~i~~~l~~ 314 (377)
..++.+ .+.- ++ ... ....+|+|++|++..|++++. +|+++. ||++|......+.+.|.+
T Consensus 186 ~i~~~i~~----~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 186 GIKKGIFE----LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp -CCTTHHH----HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhc----cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 001111 1110 00 010 112478999999999999998 688886 999999999999999987
Q ss_pred hh
Q 017091 315 LR 316 (377)
Q Consensus 315 l~ 316 (377)
+.
T Consensus 258 ~~ 259 (337)
T 2qm8_A 258 HR 259 (337)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.65 E-value=1.5e-16 Score=145.24 Aligned_cols=147 Identities=18% Similarity=0.276 Sum_probs=88.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhh--CCCC-----CCCeEEECCEeCCCC-CHHHHhcceEEEccCCcCccccHHHH
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEP-----SDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p-----~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
-+++|++++|+||||||||||++.|++ ..+| ..|.+++++.+.... ....+.+.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5665 577888887652110 112233445554442 3444
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH-HHHHHHHHc--CCCCEEEEeCcCCCCCHH-
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ-RIAIARAIL--RDPAILLLDEATSALDSE- 303 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q-Rv~iAral~--~~p~illlDEPts~LD~~- 303 (377)
+.+... .+..+.. .+.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA------------------------------------FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC------------------------------------CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec------------------------------------CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 433211 1111111 111112222 689999999999999985
Q ss_pred ------H-----HHHHHHHHHHhhccCCCCeEEEEEecCchhH-------------------H-hcCeEEEEeCC
Q 017091 304 ------S-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------------K-AVDRIVVIDDG 347 (377)
Q Consensus 304 ------~-----~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-------------------~-~~d~v~~l~~G 347 (377)
. ...+...|.++.++ .|.|||+++|..... . .||.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~--~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADE--FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 23344445554432 488999999965432 2 48999999865
No 127
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.64 E-value=2.7e-20 Score=164.64 Aligned_cols=172 Identities=17% Similarity=0.064 Sum_probs=107.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKN 238 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~ 238 (377)
|++++|+||||||||||+++|++ |.+|.+.++|.++... ..+++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 6789999998665321 2467788766433 457777775310
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCCCCC--ChHHHHHHHHHH------HHcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLL--SGGQKQRIAIAR------AILRDPAILLLDEATSALDSESEHYVKG 310 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L--SgGq~QRv~iAr------al~~~p~illlDEPts~LD~~~~~~i~~ 310 (377)
..... .+....++.. .+.........+ |+|++|++.++. +++.+|+...+|+ ++|+..... .+
T Consensus 67 ---~~~~~-~~~~~ild~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 67 ---VNFLL-AQNDVVLDYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp ---HHHHH-TTCEEEEESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred ---HHHHh-cCCcEEEeec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 00000 0000000000 000000000123 888888888888 8888888888884 899988777 77
Q ss_pred HHHHhhccCCCCeEEEEEecC-chhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 311 VLHALRNDCKTKRTVIVIAHR-LSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 311 ~l~~l~~~~~~g~tvi~itH~-l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
.+..+.. .+.++|.+||. ++.+.. ||+|+ ++|+++..|+++-+-.
T Consensus 138 ~~~~~~~---~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~ 184 (189)
T 2bdt_A 138 EFESKGI---DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEH 184 (189)
T ss_dssp HHHHTTC---CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--------
T ss_pred HHhhcCC---CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhh
Confidence 7777642 36799999999 999876 99998 9999999998876643
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.63 E-value=2e-18 Score=159.30 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=95.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCC--
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-- 232 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~-- 232 (377)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+.. ......+++++|++.++ ..++.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 12334566677877665 568888885310
Q ss_pred ---------CCCCCHHHHHHHHH--HcC------------HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH-cCCC
Q 017091 233 ---------PKDVKNEDIEWAAK--QAY------------VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-LRDP 288 (377)
Q Consensus 233 ---------~~~~~~~~~~~~~~--~~~------------l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral-~~~p 288 (377)
.......+...... ..+ +.....+. ...||| |+ ||+ +.+|
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~---------~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRW---------IHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE---------EETTTT----EE---EETTTSCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC---------CcCCCC----Cc---cccccCCC
Confidence 00011111111110 011 11111111 146898 66 788 9999
Q ss_pred CEEEEe----CcCCCCCHHHHHHHHHHHHHhhc
Q 017091 289 AILLLD----EATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 289 ~illlD----EPts~LD~~~~~~i~~~l~~l~~ 317 (377)
++++|| |||++||+.+.+.+.+.+.++.+
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 999999 99999999999999999988754
No 129
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.63 E-value=1.6e-18 Score=164.23 Aligned_cols=130 Identities=13% Similarity=0.105 Sum_probs=88.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC--
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-- 235 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-- 235 (377)
.++.+++|+|+||||||||++.|.+++.+. | . . ++.+.+|+||.++++.++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 356899999999999999999999999763 2 0 1 34466779999999889999987642100
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccc------cC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH
Q 017091 236 VKNEDIEWAAKQAYVHEFILSLPCGYETL------VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303 (377)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~ 303 (377)
........+.+...+.+++..++.|++|. +. +..+||||+||+++|++...+|+|||+||||+++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 00000001111223556677777776542 22 3579999999999983333399999999999999985
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.63 E-value=2e-17 Score=165.78 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=103.9
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHH--HhcceEEEccCCcCc-cc
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW--LREKIGFVGQEPQLL-QM 222 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~l~-~~ 222 (377)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+..... ... .|++|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887764321 111 366799999998766 67
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-CCC-CEEEEeCcCCCC
Q 017091 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDP-AILLLDEATSAL 300 (377)
Q Consensus 223 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-~~p-~illlDEPts~L 300 (377)
++++|+.++...... .. +++.. |.... ...|-.--+|++.++|++. ..| .+||..+||+|.
T Consensus 363 tV~e~l~~a~~~~~D---------vV----LIDTa--Grl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKARNID---------VL----IADTA--GRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHTTCS---------EE----EECCC--CSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHhcCCC---------EE----EEeCC--Cccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 999999764211100 00 00000 00000 0011122358889999775 446 466666689887
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 301 D~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
|... .++.+++. .+.|.|++||
T Consensus 426 ~al~------~ak~f~~~--~~itgvIlTK 447 (503)
T 2yhs_A 426 NAVS------QAKLFHEA--VGLTGITLTK 447 (503)
T ss_dssp HHHH------HHHHHHHH--TCCSEEEEEC
T ss_pred HHHH------HHHHHHhh--cCCCEEEEEc
Confidence 6543 23333321 3789999999
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.61 E-value=1.8e-17 Score=143.10 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=72.7
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+.+|+++.|++ ..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ...+ .+
T Consensus 9 ~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~ 79 (158)
T 1htw_A 9 PDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GK 79 (158)
T ss_dssp CSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TE
T ss_pred CCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cc
Confidence 34456677753 36999999999999999999999999999999999999 9999999999877421 1111 28
Q ss_pred EccCCcCccccHHHHHhc
Q 017091 213 VGQEPQLLQMDIKSNIMY 230 (377)
Q Consensus 213 v~Q~~~l~~~tv~eni~~ 230 (377)
++|++.+|..|+.||+.+
T Consensus 80 ~~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 80 MIYHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEEEECTTCSCTTHHHH
T ss_pred ceeccccccCCcHHHHHH
Confidence 999988888899999853
No 132
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.58 E-value=1.4e-15 Score=149.90 Aligned_cols=149 Identities=13% Similarity=0.199 Sum_probs=95.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHH--HhhCCCCCCC-----eEEECCEeCCC-CCHHHHhcceEEEccCCcCccccHHHH
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDG-----QIYIDGFPLTD-LDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~--l~gl~~p~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
-|++|++++|+||||||||||++. +.++.+|+.| .+++++.+... .....+.+++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577776544 78888875311 112223445665544 56667
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCcCCCCCHHHH
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~illlDEPts~LD~~~~ 305 (377)
+.+... ...+.. .+.+.-++.+ -.+|+++++|||++.+|+...
T Consensus 247 i~~~~~--~~~~~~---------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARA--YNADHQ---------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEEC--CSHHHH---------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEecc--CChHHH---------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 665421 111111 1111111111 257999999999999997543
Q ss_pred ------------HHHHHHHHHhhccCCCCeEEEEEecCc-------------------hhHHh-cCeEEEEeCCE
Q 017091 306 ------------HYVKGVLHALRNDCKTKRTVIVIAHRL-------------------STIKA-VDRIVVIDDGR 348 (377)
Q Consensus 306 ------------~~i~~~l~~l~~~~~~g~tvi~itH~l-------------------~~~~~-~d~v~~l~~G~ 348 (377)
..+++.|+++.++ .|.|||+|+|.. ..+.. +|.+++|++++
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake--~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQ--FGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4566777777653 489999999982 22454 89999998763
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.58 E-value=1.9e-15 Score=145.44 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=109.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH----HHhc--ceEEEccCCcCc-cccHHHHH
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WLRE--KIGFVGQEPQLL-QMDIKSNI 228 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~----~~r~--~i~~v~Q~~~l~-~~tv~eni 228 (377)
..++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .+++ .+.+++|...++ ..+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765532 2233 466999998877 57899998
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHH
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i 308 (377)
.++..... +.. +++.. |.. ..-..=..+.-.++|++..++++++||.+|. .| +
T Consensus 205 ~~~~~~~~---------d~v----liDta--G~~-----~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------~ 257 (328)
T 3e70_C 205 QHAKARGI---------DVV----LIDTA--GRS-----ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------I 257 (328)
T ss_dssp HHHHHHTC---------SEE----EEEEC--CSC-----CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------H
T ss_pred HHHHhccc---------hhh----HHhhc--cch-----hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------H
Confidence 75310000 000 01111 100 0011122334458999999999999996654 33 3
Q ss_pred HHHHHHhhccCCCCeEEEEEecCchh---------HHh-cCeEEEEeCCEEE
Q 017091 309 KGVLHALRNDCKTKRTVIVIAHRLST---------IKA-VDRIVVIDDGRII 350 (377)
Q Consensus 309 ~~~l~~l~~~~~~g~tvi~itH~l~~---------~~~-~d~v~~l~~G~i~ 350 (377)
.+.++.+.+. .+.|+|++||.-+. +.. .-.|.++..|+.+
T Consensus 258 ~~~~~~~~~~--~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 258 VEQARQFNEA--VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHH--SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHHh--cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 3444544432 37899999994322 222 4578888888765
No 134
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.55 E-value=1.8e-16 Score=153.77 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=77.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-CCCCeEEEC-CEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv 224 (377)
..++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.++ |.+.. ...+..+++++|++.++ ..++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357888875 4899999999999999999999999999 999999987 76542 12356799999999877 4688
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+++... ....+++.. .+.++++.+...........+|| ||+||++||+++
T Consensus 279 ~e~~l~----~l~~~e~~~-----~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REFGLW----HLEPEQITQ-----GFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTCCCC----CCCHHHHHH-----TSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHhhhc----CCCHHHHHH-----HHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 885221 223333221 12233333322111111225799 999999999875
No 135
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.54 E-value=2.1e-18 Score=171.08 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=88.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC-C---HHHHhcceEEEc---------c
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-D---IRWLREKIGFVG---------Q 215 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~---~~~~r~~i~~v~---------Q 215 (377)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... + ...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 378999999999999999999999999999999999999876421 1 112344566655 9
Q ss_pred CCcCc--c-----ccHHHHHhcCCC--------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 216 EPQLL--Q-----MDIKSNIMYGCP--------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 216 ~~~l~--~-----~tv~eni~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|.++ . .|+.+++.++.. ...........+...++..+. ....|||||+|| |
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-----------~~~~LSgg~~QR--L 302 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-----------ISSSLLGVLAQR--L 302 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------HHHHEEEEEEEE--E
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH--h
Confidence 88753 2 488898865311 011112222223333332221 114699999999 9
Q ss_pred HHHHcCCCCEEE
Q 017091 281 ARAILRDPAILL 292 (377)
Q Consensus 281 Aral~~~p~ill 292 (377)
||+++.+|++..
T Consensus 303 araL~~~p~~~~ 314 (418)
T 1p9r_A 303 VRTLCPDCKEPY 314 (418)
T ss_dssp EEEECTTTCEEE
T ss_pred hhhhcCCCCccC
Confidence 999999999875
No 136
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.54 E-value=1.5e-14 Score=141.54 Aligned_cols=74 Identities=27% Similarity=0.450 Sum_probs=65.6
Q ss_pred CCCChHHHHHH------HHHHHHcCC-CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCe
Q 017091 268 DLLSGGQKQRI------AIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 340 (377)
Q Consensus 268 ~~LSgGq~QRv------~iAral~~~-p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~ 340 (377)
..|||||+||+ ++||+++.+ |++|||||||++||+.....+.+.|.++. .+.+||+|||+++....||+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~----~~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK----SIPQMIIITHHRELEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC----SCSEEEEEESCGGGGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc----cCCeEEEEEChHHHHhhCCE
Confidence 46999999988 567999999 99999999999999999999999998873 24689999999885556999
Q ss_pred EEEEe
Q 017091 341 IVVID 345 (377)
Q Consensus 341 v~~l~ 345 (377)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=5.8e-15 Score=142.60 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh-CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~ 239 (377)
.+.|+||||+||||+++++++ ++.|+.|.+.++|.++.... ..+..+++++|.+.+. ..+- .+ .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MG---NNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cC---CcchH
Confidence 389999999999999999999 89999999999998765322 2256799999987542 1110 00 01111
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.+.+..+ ++....+ +.... .||| +..+|+++|+|||++ ||+.+...+.+.+.+..
T Consensus 108 ~~~~~i~-----~~~~~~~--~~~~~---~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--- 162 (354)
T 1sxj_E 108 VIQELLK-----EVAQMEQ--VDFQD---SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--- 162 (354)
T ss_dssp HHHHHHH-----HHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST---
T ss_pred HHHHHHH-----HHHHhcc--ccccc---cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---
Confidence 1222211 1111111 11000 3566 778999999999999 99999999999988763
Q ss_pred CCCeEEEEEecCchhH
Q 017091 320 KTKRTVIVIAHRLSTI 335 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~ 335 (377)
.+.++|++||+++.+
T Consensus 163 -~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPI 177 (354)
T ss_dssp -TTEEEEEEESCSCSS
T ss_pred -CCCEEEEEeCCHHHH
Confidence 468999999998754
No 138
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.52 E-value=1.5e-15 Score=133.02 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=75.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 233 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~ 233 (377)
+|++++|+.++|+||||||||||++++++.+.|.+|.. +.| .+..+.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~---------~~~~~~~~---- 80 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYF---------FDTKDLIF---- 80 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCE---------EEHHHHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEE---------EEHHHHHH----
Confidence 45678899999999999999999999999987766621 111 11212110
Q ss_pred CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC-CCCHHHHHHHHHHH
Q 017091 234 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVL 312 (377)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts-~LD~~~~~~i~~~l 312 (377)
.+... .... ... -+...+.+|++|+||||++ ++|+.....+.+++
T Consensus 81 ------~~~~~---------~~~~-----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 81 ------RLKHL---------MDEG-----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ------HHHHH---------HHHT-----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ------HHHHH---------hcCc-----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 00000 0000 011 0112234899999999995 99999999999998
Q ss_pred HHhhccCCCCeEEEEEecCch
Q 017091 313 HALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 313 ~~l~~~~~~g~tvi~itH~l~ 333 (377)
....+ .|+++|++||...
T Consensus 127 ~~~~~---~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYN---NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHH---TTCEEEEECCCCS
T ss_pred HHHHH---cCCCEEEEcCCCh
Confidence 87753 4789999999764
No 139
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.52 E-value=5.4e-16 Score=147.71 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=80.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE---CCEeCCCCCHHHHh-cceEEEccCCcC------ccccH
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLR-EKIGFVGQEPQL------LQMDI 224 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~l------~~~tv 224 (377)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++++.... ..+ +.+||++|+|.+ ...|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345679999999999999999999999 99999999999 9988765432 222 369999999854 24688
Q ss_pred HHHH--hcC--------C----CCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 225 KSNI--MYG--------C----PKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 225 ~eni--~~~--------~----~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
||+ .|+ . ........+.++++..++.+ ..+.++ ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence 887 443 0 11122345677777777754 455544 458998899999987
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.51 E-value=1.7e-14 Score=123.20 Aligned_cols=92 Identities=18% Similarity=0.324 Sum_probs=69.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC--eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999876 46 444443222110
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
+++.+|++|++|||++ +|+..++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2356899999999998 6666688
Q ss_pred HHHHHHHHhhccCCCCeE-EEEEecC
Q 017091 307 YVKGVLHALRNDCKTKRT-VIVIAHR 331 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~t-vi~itH~ 331 (377)
.+.+.+..+.+ .|++ +|++||.
T Consensus 102 ~l~~li~~~~~---~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRN---SGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHH---HTCCEEEEEESS
T ss_pred HHHHHHHHHHH---cCCcEEEEECCC
Confidence 89899888764 3677 8888884
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.49 E-value=5.3e-17 Score=165.02 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=111.8
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 226 (377)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+ -...++++.|..... ..|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999999999999886522221 134577777665422 246666
Q ss_pred HHhcCCC--------CCCCHHHHHHHHHHc-------------CHHHHHHhC---CCCcccc----cC-----CCCCChH
Q 017091 227 NIMYGCP--------KDVKNEDIEWAAKQA-------------YVHEFILSL---PCGYETL----VD-----DDLLSGG 273 (377)
Q Consensus 227 ni~~~~~--------~~~~~~~~~~~~~~~-------------~l~~~~~~~---~~~~~~~----~~-----~~~LSgG 273 (377)
++..... ......+...+.+.. ...+.+.++ +.+.... +. ...+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 6543211 012222232222211 122333322 2222111 11 1247999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE--EecCchhHHh-cC
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV--IAHRLSTIKA-VD 339 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~--itH~l~~~~~-~d 339 (377)
|+||.++|. + | |+|||+.....+.+.+.++. ..++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~---~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD---PKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE---TTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc---ccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 99999987766666666553 24778875 8999998864 64
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.48 E-value=1.3e-16 Score=143.45 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=85.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc----CC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY----GC 232 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~----~~ 232 (377)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+++...+..+..+|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 4 13566666665554444444321 10
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCC--cccccC--CCCCChHHHHHHHHH-HHHcCCCCEEEEeCcCCCCCHHHHHH
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVD--DDLLSGGQKQRIAIA-RAILRDPAILLLDEATSALDSESEHY 307 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~--~~~LSgGq~QRv~iA-ral~~~p~illlDEPts~LD~~~~~~ 307 (377)
+....... +.+++..++.+ ...... ...+|+||+||+++| ++++.++.++++|||.-
T Consensus 80 ~~~~~~~~---------~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------- 141 (208)
T 3c8u_A 80 PETFDFEG---------FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------- 141 (208)
T ss_dssp GGGBCHHH---------HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG---------
T ss_pred CchhhHHH---------HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh---------
Confidence 00011111 11222222222 222222 245899999999998 88888888888888731
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchh-HHh-cCe
Q 017091 308 VKGVLHALRNDCKTKRTVIVIAHRLST-IKA-VDR 340 (377)
Q Consensus 308 i~~~l~~l~~~~~~g~tvi~itH~l~~-~~~-~d~ 340 (377)
..+... --.+++++++.+. +.+ +.|
T Consensus 142 -----~~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 -----RDLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp -----GGGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred -----HHHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 111111 1267888888876 333 555
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.46 E-value=4.4e-17 Score=153.14 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=100.6
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-cCc-cccHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-QLL-QMDIK 225 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~-~~tv~ 225 (377)
.+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.++......+.++.++++||.+ ..+ ..++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999876 79999998886554445566799999985 333 45777
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC-------
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS------- 298 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts------- 298 (377)
||+....... ..... .. .......++ ..|||||+||+.+++|+.++|++| |||+.
T Consensus 110 Deid~~~~~r-~~~~~-~~-----~~~~~~~~l---------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRR-SDRET-GA-----SVRVVNQLL---------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC----------------CTTHHHHHH---------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhccc-CCCcc-hH-----HHHHHHHHH---------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 8876532211 11000 00 001111111 348999999999999999999985 99974
Q ss_pred -----CCCHHHHHHHHHHH
Q 017091 299 -----ALDSESEHYVKGVL 312 (377)
Q Consensus 299 -----~LD~~~~~~i~~~l 312 (377)
--|...+..+++.+
T Consensus 172 ~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEECCSCCHHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHH
Confidence 23566665555543
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.42 E-value=1e-14 Score=138.71 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=68.5
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCc-------------
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQ------------- 218 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 218 (377)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.........+.+|||+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9988865432111236999999985
Q ss_pred ---Cc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcCH-HHHHHhCC
Q 017091 219 ---LL-QMDIKSNIMYGCPK--DVKNEDIEWAAKQAYV-HEFILSLP 258 (377)
Q Consensus 219 ---l~-~~tv~eni~~~~~~--~~~~~~~~~~~~~~~l-~~~~~~~~ 258 (377)
+| ..|+ +|+.|+... ......+.++++..++ .+..+.+|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 34 4678 888875321 2234567788888888 46666665
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.37 E-value=1.5e-14 Score=143.20 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=93.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~ 229 (377)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+...+ ...+++++++.. ...++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 3455544332 335788877641 1222333221
Q ss_pred cCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 230 YGC----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 230 ~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
+.. ....... .....+. .+.++..+... .....+||+|++|++++|++|+.+|.++++ +.+|+...
T Consensus 215 li~~a~~~~~L~~~-fl~~~er--a~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIAR--TRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTS--SSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred cccchhhhhhhhHH-HHHHHHH--HHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 110 0001111 1111110 00011111000 000135999999999999999999999999 99999766
Q ss_pred HHHHHHHHHhhccCCCCeEEEEEec
Q 017091 306 HYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 306 ~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
...+.+.+..+ ..+.+++++|.
T Consensus 285 -~~~~~l~~~l~--~~g~~vi~iSA 306 (416)
T 1udx_A 285 -EAVKALADALA--REGLAVLPVSA 306 (416)
T ss_dssp -HHHHHHHHHHH--TTTSCEEECCT
T ss_pred -HHHHHHHHHHH--hcCCeEEEEEC
Confidence 33344433322 23667776663
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.34 E-value=1.1e-14 Score=138.90 Aligned_cols=139 Identities=18% Similarity=0.248 Sum_probs=96.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhhCCC--CCC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE--PSD 188 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i-------------------~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p~~ 188 (377)
..|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 3589999999993 5999999988 8999999999999999999999999998 999
Q ss_pred CeEEE---CCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc
Q 017091 189 GQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264 (377)
Q Consensus 189 G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (377)
|+|.+ ||.... . ..++.++++ |+..++ ..++.+|+.+... + .. + .+ .-..| .+
T Consensus 111 G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~-------l----~~-~-~~-~i~~P-~~--- 167 (308)
T 1sq5_A 111 RRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVSD-------L----KS-G-VP-NVTAP-VY--- 167 (308)
T ss_dssp CCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHH-------H----TT-T-CS-CEEEC-CE---
T ss_pred CeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHH-------H----hC-C-CC-ceecc-cc---
Confidence 99999 887642 2 335568888 766655 5688887754210 0 00 0 00 00011 01
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCH
Q 017091 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302 (377)
Q Consensus 265 ~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~ 302 (377)
..+.+ +|+..+.+.+.+|+++|+|.|....++
T Consensus 168 ----~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 168 ----SHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ----ETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ----ccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 11222 333333345678999999999998873
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.30 E-value=3.6e-15 Score=135.98 Aligned_cols=192 Identities=12% Similarity=0.108 Sum_probs=76.9
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-hCCCCCCCeEEECCEeCCCCCHHH-HhcceEEEccCCcCc-cccH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRW-LREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~l~-~~tv 224 (377)
+..+++||++++|++++|+||||||||||+++|+ |+++|. .++.++....+.. ....++|.++++..| ..+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4689999999999999999999999999999999 998541 2222221111100 012345666665544 2333
Q ss_pred HHHHhc----CCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh--HHHHHH-HHH-HHHcCCCCEEEEeC
Q 017091 225 KSNIMY----GCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG--GQKQRI-AIA-RAILRDPAILLLDE 295 (377)
Q Consensus 225 ~eni~~----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg--Gq~QRv-~iA-ral~~~p~illlDE 295 (377)
.+++.. ... .....+.+.+.++.. ....+. ..+.| .-+++. .-+ ..++..|+..++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~vild-~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKG------------VSTLLV-IDWQGAFKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHT------------CEEEEE-CCHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcC------------CeEEEE-cCHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 333321 000 000011122222210 000000 00111 113333 111 23456778888899
Q ss_pred cCCCCCHHHHHHHHHHHHHhhcc--CCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHH
Q 017091 296 ATSALDSESEHYVKGVLHALRND--CKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 296 Pts~LD~~~~~~i~~~l~~l~~~--~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~ 357 (377)
++.+.|..+++.+.+.+.....+ ......+|+++|+++.+. .+++++...+++.....+.++
T Consensus 157 Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~ 221 (231)
T 3lnc_A 157 RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLRE 221 (231)
T ss_dssp C--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhh
Confidence 99999988877777666543211 012346777888877654 366665444454444444433
No 148
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.30 E-value=1.1e-12 Score=131.87 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=50.1
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 201 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~ 201 (377)
++|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGS 70 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccC
Confidence 489999999999 99999999999999999999999999999999999887643
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.28 E-value=9e-13 Score=125.49 Aligned_cols=113 Identities=15% Similarity=0.241 Sum_probs=78.0
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 231 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~ 231 (377)
.++++.++|++++|+|||||||||+++.|++.+.+..|+|.+.+.|... .. ..++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~~-------------------a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--AA-------------------AIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--HH-------------------HHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--HH-------------------HHHH----
Confidence 3456678899999999999999999999999999998999988776421 10 0111
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH---HHHHHHcCCCCEEEEeCcCCCCCHHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI---AIARAILRDPAILLLDEATSALDSESEHYV 308 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv---~iAral~~~p~illlDEPts~LD~~~~~~i 308 (377)
+....+..+ ++ . ...+|+|+.|++ ++++|+..+|+++|+|||.. ......+
T Consensus 151 ---------L~~~~~~~g-------l~----~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 151 ---------LKIWGERVG-------AT----V---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp ---------HHHHHHHHT-------CE----E---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred ---------HHHHHHHcC-------Cc----E---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 111111111 11 0 024689999999 99999999999999999974 2233344
Q ss_pred HHHHHHh
Q 017091 309 KGVLHAL 315 (377)
Q Consensus 309 ~~~l~~l 315 (377)
++.+..+
T Consensus 205 ~~eL~~l 211 (306)
T 1vma_A 205 MEELRKV 211 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 150
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.26 E-value=9.4e-16 Score=147.90 Aligned_cols=172 Identities=14% Similarity=0.170 Sum_probs=107.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHhhCC----CCCCCeEEECCEeCCC
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTD 200 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~G-------e~~~ivG~nGsGKSTLl~~l~gl~----~p~~G~I~i~g~~i~~ 200 (377)
++.++++..|+. ..+++++++.+++| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 445566666653 25899999999887 899999999999999999999998 7788888776655432
Q ss_pred CCHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHH
Q 017091 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQ 274 (377)
Q Consensus 201 ~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq 274 (377)
......+..|.|++|...++. ++.|++..... .... ... ..+ .+...+.. .++. .......||+|+
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~---~~~--~i~~~l~~--~~li~at~~~~~Ls~~l 167 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGP---SAK--SIRIDIQP--FTLVGATTRSGLLSSPL 167 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------CC--CEEEEEESCGGGSCHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCc---ccc--cccccCCC--eEEEEecCCcccCCHHH
Confidence 111111356999999877665 77777642110 0000 000 000 01111111 1111 111124699999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
+||++++ .+||+.+.+.+.+.|++..+. .+ ++|+.+.+..
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~--~~-----~~~~~~~~~~ 207 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASL--MD-----VEIEDAAAEM 207 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHH--TT-----CCBCHHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHH--cC-----CCcCHHHHHH
Confidence 9998655 788888888899988877543 23 4677766543
No 151
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.26 E-value=2.1e-13 Score=129.69 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=44.3
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCcCc-----cccHHH
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-----QMDIKS 226 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~-----~~tv~e 226 (377)
+++.+|++++|+||||||||||+|+|+|+.+|.+|+|.+ +|+.++... ...+..+||++|.|.+. ..|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 888765432 11222389999999654 3578 8
Q ss_pred HHh
Q 017091 227 NIM 229 (377)
Q Consensus 227 ni~ 229 (377)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 883
No 152
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.26 E-value=5.9e-13 Score=118.32 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=55.2
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHh
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIM 229 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~ 229 (377)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|+||++..| ..++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57889999999999999999999999999974 5888887776544333466799999999877 456666654
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.25 E-value=8.7e-12 Score=118.20 Aligned_cols=142 Identities=15% Similarity=0.236 Sum_probs=89.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 237 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 237 (377)
++|++++++|||||||||+++.|++.+.+++| +++.++.+|++ ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47899999999999999999999999988778 24666666652 2233333321
Q ss_pred HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
..+..+ +|. .. ..+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+..
T Consensus 156 ------~~~~~g-------l~~----~~---~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 156 ------YAELLQ-------APL----EV---CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ------HHTTTT-------CCC----CB---CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ------HHHhcC-------CCe----Ee---cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 111100 111 00 112 3344667775 4999999999 999998776555554443321
Q ss_pred cCCCCeEEEEE--ecCchhHHh-cCeEEEEeCCEEEEE
Q 017091 318 DCKTKRTVIVI--AHRLSTIKA-VDRIVVIDDGRIIEV 352 (377)
Q Consensus 318 ~~~~g~tvi~i--tH~l~~~~~-~d~v~~l~~G~i~~~ 352 (377)
. ....+++++ +|+.+.+.. ++++..++.+.++..
T Consensus 211 ~-~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 211 E-SSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp C-TTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred c-CCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 1 122234444 899887765 777666677777654
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.25 E-value=1.8e-11 Score=115.94 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=97.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
+.++++++.|+.. . ++++|+ +|++++++|+|||||||+++.|++++.+..|+|.+.+.|+.. .....
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~--~~~~~---- 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR--PAARE---- 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC--HHHHH----
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc--HhHHH----
Confidence 5567778888532 2 788888 999999999999999999999999999999999998877542 11000
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
| + ....+.. .++ -.......+..+.+|.+|+++...+++++
T Consensus 144 ---q------------l-------------~~~~~~~-------~l~----~~~~~~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 144 ---Q------------L-------------RLLGEKV-------GVP----VLEVMDGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp ---H------------H-------------HHHHHHH-------TCC----EEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ---H------------H-------------HHhcccC-------CeE----EEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 0 0 0000100 111 00000112445667899999988999999
Q ss_pred EEeCc-CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 017091 292 LLDEA-TSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329 (377)
Q Consensus 292 llDEP-ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it 329 (377)
|+||| ++++|......+.+....+. ...+++++.
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~----~~~~~lv~~ 219 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLG----PDEVLLVLD 219 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHC----CSEEEEEEE
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcC----CCEEEEEEe
Confidence 99999 99999988777777766652 344555444
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.23 E-value=5.2e-12 Score=115.10 Aligned_cols=171 Identities=16% Similarity=0.209 Sum_probs=90.6
Q ss_pred Cceeee-eEEEeCCcEEEEEcCCCCcHHHHHH-HHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 017091 148 PILNHV-CLTIEANEVVAIVGLSGSGKSTFVN-LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 148 ~vL~~i-sl~i~~Ge~~~ivG~nGsGKSTLl~-~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv 224 (377)
+.|+.+ .--+++|++++|+||||||||||+. ++.+..++..+.+++++.. ...........+|+.+|+.... +.++
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~~~~~~l~~ 88 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPYEEKGMFAM 88 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence 456666 5679999999999999999999955 5555555444455555432 1111112223456655532110 1111
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCcCCCC--
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSAL-- 300 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~illlDEPts~L-- 300 (377)
.+. + ..... .. ...+ . .......+ ..+....++.++ .+|+++++|+|++.+
T Consensus 89 ~~~--~--~~~~~-----------~~----~~~~--~--~~~~~~~~--~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~ 143 (247)
T 2dr3_A 89 VDA--F--TAGIG-----------KS----KEYE--K--YIVHDLTD--IREFIEVLRQAIRDINAKRVVVDSVTTLYIN 143 (247)
T ss_dssp EEC--S--TTTTC-----------C------CCC--S--CBCSCCSS--HHHHHHHHHHHHHHHTCCEEEEETSGGGTTT
T ss_pred Eec--c--hhhcc-----------cc----cccc--c--ccccCccC--HHHHHHHHHHHHHHhCCCEEEECCchHhhcC
Confidence 110 0 00000 00 0000 0 00001111 222233333333 479999999999988
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh--------HH-hcCeEEEEeC
Q 017091 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------IK-AVDRIVVIDD 346 (377)
Q Consensus 301 D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~--------~~-~~d~v~~l~~ 346 (377)
|+....+....+.++.++ .|.|||+++|.... +. .||.|+.|+.
T Consensus 144 ~~~~~~~~l~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 144 KPAMARSIILQLKRVLAG--TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp CGGGHHHHHHHHHHHHHH--TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHH--CCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 554444454555554433 48899999998764 33 4899999964
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.18 E-value=1.3e-14 Score=135.98 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=95.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
-+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++.++
T Consensus 50 ~~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 122 (278)
T 1iy2_A 50 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 122 (278)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence 345667777753 35899999999999 99999999999999999999885 799999987764332233445688
Q ss_pred EEccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 212 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 212 ~v~Q~~~-l~-~~tv~eni-~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+++|... .+ ..++.|++ .++..... ..++.... +..++ ..|||||+||+.+++|+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll-------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL-------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH-------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH-------------HHHhCCCCCCCEEEEEe
Confidence 8888764 33 45677777 33311110 01111111 12222 23799999999999999
Q ss_pred cCCCCEEEEeCcC
Q 017091 285 LRDPAILLLDEAT 297 (377)
Q Consensus 285 ~~~p~illlDEPt 297 (377)
.++|++ +|++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 67764
No 157
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.16 E-value=6.8e-13 Score=120.97 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=51.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI------- 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~------- 203 (377)
.|+++|++..|+ . +|++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~------~----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA------R----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE------E----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC------C----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888865442 1 566667 8999999999999999999999999999999999998743322
Q ss_pred -HHHhcceEEEccC
Q 017091 204 -RWLREKIGFVGQE 216 (377)
Q Consensus 204 -~~~r~~i~~v~Q~ 216 (377)
...+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 1235679999985
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.15 E-value=3.1e-12 Score=129.30 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=95.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh--CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc---ccH-
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ---MDI- 224 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~---~tv- 224 (377)
+.+++++.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|........+.. -|++.. ...
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMK 230 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHH
Confidence 35788899999999999999999999999886 67777899988888765432221110 122210 011
Q ss_pred --HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH----------HHHHHHcCCCC-EE
Q 017091 225 --KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI----------AIARAILRDPA-IL 291 (377)
Q Consensus 225 --~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv----------~iAral~~~p~-il 291 (377)
.+.+... ....+++ .+.+...++.++.. |+... ...+|+||+|+. ++|+++...|. ++
T Consensus 231 ~a~~~L~~~--~~EmerR-~~ll~~~Gv~~i~~-----yn~~~-~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DAANALRWC--VNEMERR-YKLMSALGVRNLAG-----YNEKI-AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHHH--HHHHHHH-HHHHHHTTCSSHHH-----HHHHH-HHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHHH--HHHHHHH-HHHHHHcCCccHHH-----HHHHH-HHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 1111110 0000000 11111111111000 00000 013678887752 46677788898 89
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCC-CCeEEEEEecCch
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCK-TKRTVIVIAHRLS 333 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~-~g~tvi~itH~l~ 333 (377)
++||+++-+|.. ...+.+.+.++.+..+ .|.++|++||+++
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999998843 3455566665543322 3889999999987
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.14 E-value=4.9e-12 Score=126.89 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=110.1
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcce-EEEccCCcCccccH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDI 224 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~tv 224 (377)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...+..++ +.... ..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~------~~- 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGN------IN- 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHT------CC-
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcC------CC-
Confidence 3578999888999999999999999999999999987766555 56665533 2333333221 11111 00
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCcCCCCCH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS 302 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~illlDEPts~LD~ 302 (377)
.+.+..| ....++.....+. .+.+...|.-. .....+|.+|.+ +.+|.+. .+|+++++|+++.-.++
T Consensus 260 ~~~l~~g---~l~~~~~~~~~~a---~~~l~~~~l~i---~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 260 AQNLRTG---KLTPEDWGKLTMA---MGSLSNAGIYI---DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHTS---CCCHHHHHHHHHH---HHHHHSSCEEE---ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHHhcC---CCCHHHHHHHHHH---HHHHhcCCEEE---ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 1122222 2233332222221 11222222111 112468999876 5667766 68999999999998743
Q ss_pred --------HHHHHHHHHHHHhhccCCCCeEEEEEec---------C--ch--------hHH-hcCeEEEEeCCEE
Q 017091 303 --------ESEHYVKGVLHALRNDCKTKRTVIVIAH---------R--LS--------TIK-AVDRIVVIDDGRI 349 (377)
Q Consensus 303 --------~~~~~i~~~l~~l~~~~~~g~tvi~itH---------~--l~--------~~~-~~d~v~~l~~G~i 349 (377)
.....+.+.|+.+.++ .+.+||+++| + +. .+. .||.|++|+.++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARE--LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHH--HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2234556666666543 4889999999 3 32 344 4999999986654
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.14 E-value=2.1e-14 Score=132.63 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=96.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
.+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++........++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456677777743 35899999999999 99999999999999999999885 789999987664332233345678
Q ss_pred EEccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 212 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 212 ~v~Q~~~-l~-~~tv~eni-~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+++|... .+ ..++.|++ .++..... ..++..+. +..++. .|||||+||+.+++|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll~-------------~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHHH-------------HHHTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHHH-------------HHhCCCCCCCEEEEEc
Confidence 8888753 33 45666776 33311110 01111111 122222 3799999999999999
Q ss_pred cCCCCEEEEeCcCC
Q 017091 285 LRDPAILLLDEATS 298 (377)
Q Consensus 285 ~~~p~illlDEPts 298 (377)
.++|++ +|++.-
T Consensus 161 t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 161 TNRPDI--LDPALL 172 (254)
T ss_dssp ESCGGG--SCGGGG
T ss_pred cCCchh--CCHHHc
Confidence 999987 688764
No 161
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.14 E-value=1.6e-10 Score=112.02 Aligned_cols=144 Identities=20% Similarity=0.257 Sum_probs=83.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE-CCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 234 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~ 234 (377)
-+++|+++.|.||+|||||||+..++.......|.+.+ +... ..+.. +.+++|+.+++.. +.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~~-~a~~lG~~~~~l~-----------i~--- 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDPE-YAKKLGVDTDSLL-----------VS--- 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTCCGGGCE-----------EE---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCHH-HHHHcCCCHHHeE-----------Ee---
Confidence 58899999999999999999988887654444444433 3221 11111 1111222111110 00
Q ss_pred CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCcCCCC----------CH
Q 017091 235 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSAL----------DS 302 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~--p~illlDEPts~L----------D~ 302 (377)
...+. .|-+.++++++.+ |+++++|||++.+ |+
T Consensus 120 ---------------------------------~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 120 ---------------------------------QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ---------------------------------CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ---------------------------------cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 00122 2334577777755 9999999999998 32
Q ss_pred ---HHHHHHHHHHHHhh---ccCCCCeEEEEEecCch----------------hHHh-cCeEEEEeCCEEEEEc
Q 017091 303 ---ESEHYVKGVLHALR---NDCKTKRTVIVIAHRLS----------------TIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 303 ---~~~~~i~~~l~~l~---~~~~~g~tvi~itH~l~----------------~~~~-~d~v~~l~~G~i~~~g 353 (377)
...+.+.+.++++. ++ .+.|||+++|-.. .++. ||.++.++.++++..|
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~--~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNN--SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHH--hCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 12223444444442 22 4789999999543 1444 8999999877654433
No 162
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=2.8e-14 Score=140.15 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=105.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhh------------CCCCCCCeEEECCEeCCCCCH-HHHhcce---EEEccCCcC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDI-RWLREKI---GFVGQEPQL 219 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g------------l~~p~~G~I~i~g~~i~~~~~-~~~r~~i---~~v~Q~~~l 219 (377)
.+++|..++|+|+||||||||+++|+| ...|++|.|.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 667999999998854321100 0001122 355566655
Q ss_pred cc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCc
Q 017091 220 LQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEA 296 (377)
Q Consensus 220 ~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p--~illlDEP 296 (377)
.. .+..+++ .. .....++.+. ..+.-+...-+. ....+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L--------~~-~fl~~ir~~d--~il~Vvd~~~d~--~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGL--------GN-AFLSHVRAVD--AIYQVVRAFDDA--EIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSS--------CH-HHHHHHTTCS--EEEEEEECCCTT--CSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHH--------HH-HHHHHHHHHH--HHHHHHhccccc--eeeeecccc------------Ccchhhhhchhh
Confidence 42 2222211 01 1111111100 000000000000 011255542 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-hccCCCCeEEEEEecCchhHHh-cCeEE-EEeCC-EEEEEcCh
Q 017091 297 TSALDSESEHYVKGVLHAL-RNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDG-RIIEVGNH 355 (377)
Q Consensus 297 ts~LD~~~~~~i~~~l~~l-~~~~~~g~tvi~itH~l~~~~~-~d~v~-~l~~G-~i~~~g~~ 355 (377)
++++|+...++.++.+... .+ .|.|++ +|.+..+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~---~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSR---GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC---SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999998888888876 42 366653 999998865 99999 99999 88766654
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.12 E-value=2.7e-12 Score=113.25 Aligned_cols=141 Identities=21% Similarity=0.150 Sum_probs=76.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC-----------CCCeEEECCEeCCC--CCHHHHhcceEEEccCCcCc--cccHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEP-----------SDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLL--QMDIKS 226 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~l~--~~tv~e 226 (377)
.++|+|+||||||||++.++|...| ++|+|.++|.++.- ++....++..++++|...-. ..+|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976421 11111112233333321100 011111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-ccc-CCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLV-DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
+... .+.+.+..... +.......... ..+ ....|..-..+.+.+|++++.+|+++++| ||++|..+
T Consensus 111 ~~~~-----~s~~~~~~~~~-----~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKH-----LTYENVERWLK-----ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCH-----HHHHTHHHHHH-----HHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCH-----HHHHHHHHHHH-----HHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 1100 00011111111 11110000000 000 11123332334578899999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 017091 305 EHYVKGVLHA 314 (377)
Q Consensus 305 ~~~i~~~l~~ 314 (377)
..++++.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888764
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.05 E-value=6.9e-12 Score=130.16 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=102.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCC---------
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEP--------- 217 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--------- 217 (377)
.+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+++.+.... ...++++|+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 69999999999999999999999999999999999999887 7888888765543 34588887654
Q ss_pred -------------cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 218 -------------QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 218 -------------~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
..+ ..++.+|+............+.. ......++..... ++... ...+|+|++|++..++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~--~~~~~~~L~G~~~--~~~~~-~g~~~~g~~~~i~~g~~ 197 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA--TGAHAGALLGDVR--HDPFQ-SGGLGTPAHERVEPGMI 197 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC--TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc--CCCCHHhcCceEE--echhh-cCCccccccccccCcee
Confidence 111 22333333322110000000000 0011222222111 01110 13589999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHA 314 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~ 314 (377)
...++.+|++||... |++.....+.+.|.+
T Consensus 198 ~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 198 HRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999988 899999888888874
No 165
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.01 E-value=1.9e-11 Score=113.06 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=60.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHh---hCCCCCCCeEE--------ECCEeCC-CCCHHHHhcceEEEccCC------cC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPLT-DLDIRWLREKIGFVGQEP------QL 219 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 219 (377)
++|++++|+|||||||||++++|+ |+..|++|.|. .+|.++. ......+++.+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 345667888999999754 23
Q ss_pred ccccHHHHHh
Q 017091 220 LQMDIKSNIM 229 (377)
Q Consensus 220 ~~~tv~eni~ 229 (377)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 4556666654
No 166
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.92 E-value=1.1e-11 Score=112.00 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=76.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC---CCCCCeEEE--------CCEeCCC-CCHHHHhcceEEEccCCc------Ccc
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYI--------DGFPLTD-LDIRWLREKIGFVGQEPQ------LLQ 221 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~~------l~~ 221 (377)
+.+++|+|||||||||++++|++.+ .+++|++.. +|.++.. ....++++++++++|++. +..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 788999987 6776642 234567788999998752 234
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc---CCCCCChHHHHHHHHHHHHcCCCCEEEEeCcC
Q 017091 222 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV---DDDLLSGGQKQRIAIARAILRDPAILLLDEAT 297 (377)
Q Consensus 222 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~LSgGq~QRv~iAral~~~p~illlDEPt 297 (377)
.++.+++. .+++..++..+...+.+.....+..+.+ ++.-++|+ .++++++.+++++++.+++
T Consensus 85 ~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR--------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT--------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC--------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 56666653 1233333333333222222111111100 11235555 3455677889999988765
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.91 E-value=2.1e-10 Score=101.33 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHh
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l 315 (377)
...|++++.+|+++++| ||++|+....++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999998888877653
No 168
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.90 E-value=6.4e-10 Score=116.50 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=90.9
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 231 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~ 231 (377)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|..+.++...+.++.+++.+|...++..++..||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987655 78999 788888888887888889999998877655555555421
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~ 311 (377)
+... + . + .+ .....-..++-++++| |+.++++.++.. ++.
T Consensus 82 -pG~~-~--f-----------------------------~-~~----~~~~l~~ad~~ilVvD-~~~g~~~qt~~~-~~~ 121 (665)
T 2dy1_A 82 -PGYG-D--F-----------------------------V-GE----IRGALEAADAALVAVS-AEAGVQVGTERA-WTV 121 (665)
T ss_dssp -CCSG-G--G-----------------------------H-HH----HHHHHHHCSEEEEEEE-TTTCSCHHHHHH-HHH
T ss_pred -CCcc-c--h-----------------------------H-HH----HHHHHhhcCcEEEEEc-CCcccchhHHHH-HHH
Confidence 1110 0 0 0 00 0111113467788888 999999887633 233
Q ss_pred HHHhhccCCCCeEEEEEecCchh
Q 017091 312 LHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 312 l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
+.. .+..+|++.|.++.
T Consensus 122 ~~~------~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 AER------LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHH------TTCCEEEEEECGGG
T ss_pred HHH------ccCCEEEEecCCch
Confidence 322 25678888887764
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.83 E-value=9.4e-12 Score=121.66 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=84.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
.+++++|+.+++|++++|+||||||||||+++|+|. .+|++..-+ ... ......+|++||...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 589999999999999999999999999999999995 468776511 111 11222478888876532 222
Q ss_pred HhcCCC--CCC-CHHHHHHHHHHcCHHHHHHh---------CCCCccccc-------CCCCCChHHHHHHHHHHHHcCCC
Q 017091 228 IMYGCP--KDV-KNEDIEWAAKQAYVHEFILS---------LPCGYETLV-------DDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 228 i~~~~~--~~~-~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~-------~~~~LSgGq~QRv~iAral~~~p 288 (377)
+..... ... ....+. ....+.+.++. .|...+... ....+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 222111 000 000110 11123333321 000001000 12458999999999998899999
Q ss_pred CEEE-EeCcCC
Q 017091 289 AILL-LDEATS 298 (377)
Q Consensus 289 ~ill-lDEPts 298 (377)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999997
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.83 E-value=4.3e-10 Score=99.92 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=48.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHH
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI 228 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni 228 (377)
..+-.++.++|++++|+||||||||||+++|++.+ |.+.++|.++... ....+..+++++|++..+ ..++.+|+
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 33334667889999999999999999999999987 8999999877531 112233478888876544 33444443
No 171
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.82 E-value=1.5e-09 Score=105.47 Aligned_cols=174 Identities=16% Similarity=0.179 Sum_probs=86.4
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh--CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc-Cc-c-c
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LL-Q-M 222 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~-~-~ 222 (377)
.+|++++++++ .++|+|++|||||||++.|.| ++++.+|.+.-....+.-.+...-....+..++.+. .| + .
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA 101 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHH
Confidence 58999999998 999999999999999999999 778888877544432211000000112333332221 11 1 0
Q ss_pred cHHH-----HHhc-CCCCCCCHHHHHHHHHHc---CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 017091 223 DIKS-----NIMY-GCPKDVKNEDIEWAAKQA---YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 293 (377)
Q Consensus 223 tv~e-----ni~~-~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illl 293 (377)
.+.+ +... +.....+...+. .+.. ...-.+-..| |+.......+.++.++|+..+++..+.+|+++|+
T Consensus 102 ~v~~~i~~~~~~~~g~~~~~s~~~i~--l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iil 178 (360)
T 3t34_A 102 AVRKEIQDETDRETGRSKAISSVPIH--LSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIIL 178 (360)
T ss_dssp HHHHHHHHHHHHTSCTTCCCCCSCEE--EEEEETTSCSEEEEECC-CBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcccceEE--EEEeCCCCCCeEEEECC-CCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEE
Confidence 1111 1111 000000000000 0000 0000001122 2211111124678899999999999999998888
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 294 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
.-..+..|..+ ....++++.+... ...+++++|.
T Consensus 179 vv~~~~~~~~~-~~~~~l~~~~~~~--~~~~i~V~nK 212 (360)
T 3t34_A 179 AISPANQDLAT-SDAIKISREVDPS--GDRTFGVLTK 212 (360)
T ss_dssp EEEETTSCGGG-CHHHHHHHHSCTT--CTTEEEEEEC
T ss_pred EeecccCCcCC-HHHHHHHHHhccc--CCCEEEEEeC
Confidence 75444555443 3445666666432 2357777776
No 172
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.80 E-value=7.9e-10 Score=98.39 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=56.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 221 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 221 (377)
+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+..-.+...+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999876 67787 688887767777776654 57777778
Q ss_pred ccHHHHHhcC
Q 017091 222 MDIKSNIMYG 231 (377)
Q Consensus 222 ~tv~eni~~~ 231 (377)
.++.+| .||
T Consensus 89 ~~~~~n-~YG 97 (197)
T 3ney_A 89 GSYQGN-MFG 97 (197)
T ss_dssp EEETTE-EEE
T ss_pred hhhhce-ecc
Confidence 888888 466
No 173
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.76 E-value=2e-10 Score=102.07 Aligned_cols=61 Identities=33% Similarity=0.428 Sum_probs=47.2
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE--EECCEeCC
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLT 199 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I--~i~g~~i~ 199 (377)
+|+++.++. ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 466666643 357888999999999999999999999999999999997 78988 88886654
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.76 E-value=6.5e-10 Score=102.72 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=35.8
Q ss_pred cEEEEEE-EEEcCCCCCCCceeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 131 HVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 131 ~i~~~~v-~~~y~~~~~~~vL~~isl~i~~---Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+ +|+|++ ..++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 24799999999999 9999999999999999999999855
No 175
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.75 E-value=2.7e-09 Score=92.84 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=49.3
Q ss_pred ce--eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE--eCCCCCH----HHHhcceEEEccCCc
Q 017091 149 IL--NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF--PLTDLDI----RWLREKIGFVGQEPQ 218 (377)
Q Consensus 149 vL--~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~--~i~~~~~----~~~r~~i~~v~Q~~~ 218 (377)
.+ +++++++.+| +++|+||||||||||+++|.+++.+..|...-.+. ++-.... ...+..|.+++|++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 45 7899999999 99999999999999999999998887775432221 1111000 012456999999863
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.74 E-value=4e-09 Score=93.37 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=41.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCCcCc
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 220 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 220 (377)
+++++|++++|+|||||||||++++|++++.|+.| .+ +....... ......++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i---~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSI---SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCC---CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEec---ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977666 33 22222111 11123488888876443
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.74 E-value=1.3e-08 Score=102.39 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=78.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
..++++++.+++| +.|+||+|+|||||++++++... + | ++..+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~------------------------~------~-f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN------------------------V------P-FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT------------------------C------C-EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC------------------------C------C-eeeCCHHHH
Confidence 4678888888888 88999999999999999998321 0 0 011111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcC----------
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT---------- 297 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPt---------- 297 (377)
+.. +. | .|++++|-.+++|....|.+|++||+.
T Consensus 86 ~~~--------------------------~~-g----------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VEL--------------------------FV-G----------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTC--------------------------CT-T----------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHH--------------------------Hh-c----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 000 00 1 367889999999999999999999993
Q ss_pred CCCCHHHHHHHHHHHHHhhcc-CCCCeEEEEEecCchhH
Q 017091 298 SALDSESEHYVKGVLHALRND-CKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 298 s~LD~~~~~~i~~~l~~l~~~-~~~g~tvi~itH~l~~~ 335 (377)
++.|+...+.+.+++..+... ...+..||.+||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 467777666666666655311 01367899999998653
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.73 E-value=2.4e-09 Score=94.03 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999998
No 179
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.73 E-value=9.5e-10 Score=96.14 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEE
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYI 193 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i 193 (377)
+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999999874 5566644
No 180
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.70 E-value=1.3e-07 Score=91.59 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=45.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE-EECCEeCCCCCHHHHhcceEEEccCCc
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEPQ 218 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 218 (377)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.... +. .+.+++|+.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhh
Confidence 489999999999999999999999999888777876 55554322 22 24455777766543
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.70 E-value=4.3e-09 Score=100.65 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=59.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHH-----hcceEEE-ccCCc
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL-----REKIGFV-GQEPQ 218 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~~~ 218 (377)
+++++||++++|++++|+|+|||||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|...
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3478899999999999999999999999999999999999999998887654221 223 4568888 66543
Q ss_pred Ccc-ccHHHHH
Q 017091 219 LLQ-MDIKSNI 228 (377)
Q Consensus 219 l~~-~tv~eni 228 (377)
..+ .++.+++
T Consensus 174 ~~p~~~~~~~l 184 (320)
T 1zu4_A 174 ADPASVVFDAI 184 (320)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 332 2344443
No 182
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.67 E-value=1.3e-10 Score=117.53 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=95.4
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++++...|.. ..+++++++++++| +.|+||||+|||||+++|++... .|.+.++|.++.........+++..
T Consensus 42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 44555545542 25899999999999 99999999999999999999874 7899999988765433334455778
Q ss_pred EccCCc-Cc-cccHHHHHh-cCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 213 VGQEPQ-LL-QMDIKSNIM-YGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 213 v~Q~~~-l~-~~tv~eni~-~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++|... .. ...+.|+|. ++..... ..++..+. +..++. .||||++|+..+++|..
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~-----l~~LL~-------------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHH-----HHHHHH-------------HGGGCCSSCCCEEEECC
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHH-----HHHHHH-------------HhcccccCccEEEEEec
Confidence 888764 22 345667773 3321110 11111111 122332 27899999999999999
Q ss_pred CCCCEEEEeCcCCC
Q 017091 286 RDPAILLLDEATSA 299 (377)
Q Consensus 286 ~~p~illlDEPts~ 299 (377)
++|++ ||||.-.
T Consensus 177 n~p~~--LD~aLlr 188 (499)
T 2dhr_A 177 NRPDI--LDPALLR 188 (499)
T ss_dssp SCGGG--SCTTTSS
T ss_pred CChhh--cCccccc
Confidence 99987 8998763
No 183
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.66 E-value=1e-08 Score=99.74 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=81.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC----ccccHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL----LQMDIKS 226 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~-----------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----~~~tv~e 226 (377)
+++|+|++|||||||++.|+|... |++|.|.++|.++. +....|++.+.|.- |..| .+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH-HH
Confidence 499999999999999999999875 67799999997652 22346776664431 1112 22
Q ss_pred HH------hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCC-Cccc-c-cC-CCCCChHHHHHHHHH----HHH-cCCCCEE
Q 017091 227 NI------MYGCPKDVKNEDIEWAAKQAYVHEFILSLPC-GYET-L-VD-DDLLSGGQKQRIAIA----RAI-LRDPAIL 291 (377)
Q Consensus 227 ni------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~-~-~~-~~~LSgGq~QRv~iA----ral-~~~p~il 291 (377)
.+ .+...............+ ...+.+..+.. +... . .+ ...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 22 111110111100111111 11222322211 1100 0 11 134788888988877 666 545555
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhh
Q 017091 292 LLDEATSALDSESEHYVKGVLHALR 316 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~ 316 (377)
+|+|++|......+.+.|.++.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999999988887653
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=2.2e-08 Score=88.67 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=24.9
Q ss_pred EcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 140 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 140 ~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|+.++...+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 454444457999999999999999999999999999999999766
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.53 E-value=2.1e-08 Score=89.02 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH---HhcCeEEEEeC
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---KAVDRIVVIDD 346 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~---~~~d~v~~l~~ 346 (377)
.+.|+.+|..+++.+..+|+.+..+ .+.++|.....+.+.+... .+.++|+.+|.+... ..||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-----~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-----TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-----CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-----CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3688999999999888888654333 3456666665555554432 245788888987654 34899999863
No 186
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.53 E-value=1.2e-08 Score=90.68 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=38.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccc
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 222 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 222 (377)
-=++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 34678899999999999999999999999874 37888888877643
No 187
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.51 E-value=8.6e-08 Score=102.02 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEE-EecCchhHHh-cC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIKA-VD 339 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~-itH~l~~~~~-~d 339 (377)
.+|+|+.+|..++++++.+++++|+|||.. +||......+++.+.... ...+++++ +||+.+.+.. ++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---PDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---TTCEEEEEESCSCCHHHHHHTT
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC---CCceEEEEeccccHHHHHHHhc
Confidence 379999999999999999999999999997 999876555555554432 23567777 5999887653 54
No 188
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.49 E-value=1e-07 Score=91.58 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=80.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
-|+.+.--+.+|+++.|.|++|+|||||+.-++.-.....+ .+.|+.= .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSl-----Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSL-----EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEES-----SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeC-----CCCHHHHH
Confidence 56666556899999999999999999999888754322111 2334321 12211110
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHH
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i 308 (377)
.++........+..+.. ..||.++++|++.|...+.+++++|.|+|...+| .+
T Consensus 91 ----------~Rlls~~~~v~~~~l~~------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i 143 (338)
T 4a1f_A 91 ----------LRALSDLTSINMHDLES------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QI 143 (338)
T ss_dssp ----------HHHHHHHHCCCHHHHHH------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HH
T ss_pred ----------HHHHHHhhCCCHHHHhc------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HH
Confidence 01111111222222221 2589999999999999999999999999876544 34
Q ss_pred HHHHHHhhccCCCCeEEEEEec
Q 017091 309 KGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 309 ~~~l~~l~~~~~~g~tvi~itH 330 (377)
...+++++++ ..|..+|+|-|
T Consensus 144 ~~~ir~l~~~-~gg~~lIVIDy 164 (338)
T 4a1f_A 144 RLQLRKLKSQ-HKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHH-CTTEEEEEEEE
T ss_pred HHHHHHHHHh-cCCCCEEEEec
Confidence 5555555443 11678888754
No 189
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.40 E-value=4e-08 Score=84.82 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=33.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88999887664
No 190
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.38 E-value=4.4e-07 Score=87.85 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=47.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEe-CcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe--cCch
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLD-EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA--HRLS 333 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlD-EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it--H~l~ 333 (377)
..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.... .+..+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccC
Confidence 357999999887 66666788889999 9999999988877777776542 266788888 8874
No 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.37 E-value=8.4e-08 Score=85.13 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=39.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 202 (377)
.++|++++|+|+||||||||++.|.+++++..|.|.+.+.+....+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 5678999999999999999999999999988999988776654433
No 192
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.35 E-value=1.3e-07 Score=85.69 Aligned_cols=63 Identities=22% Similarity=0.153 Sum_probs=48.2
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC------CHHH----HhcceEEEccCCcCc
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRW----LREKIGFVGQEPQLL 220 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~l~ 220 (377)
+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+.+.... .... .++.+++++|.+.++
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 345678999999999999999999999998 78999998875321 1211 134688999877554
No 193
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.34 E-value=9.6e-07 Score=85.34 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=34.6
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.+|.+|++||+... |+.....+.+.+.++......+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 46889999999876 88777777666655432101367899999998543
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.32 E-value=1.5e-07 Score=84.09 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=29.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEE
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY 192 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~ 192 (377)
++|++++|+||||||||||++.|++.++| ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 57999999999999999999999999987 333333
No 195
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.24 E-value=1e-07 Score=91.09 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=36.8
Q ss_pred CceeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHhhCCC--CCCCeEE
Q 017091 148 PILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIY 192 (377)
Q Consensus 148 ~vL~~isl~i~~Ge------~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~ 192 (377)
+.|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~ 126 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVE 126 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEE
Confidence 46777777777776 999999999999999999999987 4555543
No 196
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.24 E-value=1.8e-07 Score=95.67 Aligned_cols=61 Identities=30% Similarity=0.343 Sum_probs=47.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEE-ECCEeCCC-------CCHH---HHhcceEEEccC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIY-IDGFPLTD-------LDIR---WLREKIGFVGQE 216 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~-i~g~~i~~-------~~~~---~~r~~i~~v~Q~ 216 (377)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +||.++.. ++.. ..++++++++|+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999987 784 89876532 1221 223457777775
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.16 E-value=6.7e-07 Score=85.41 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999888764
No 198
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.15 E-value=5.7e-07 Score=85.06 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC-CEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 238 (377)
+.+++|+|++|+|||||++.|.|.. +.+. +.+- ....+..++++++..-+ ++.| .+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~-----tTr~~~~gi~~~~~~~i--~~iD------TpG~~~ 68 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ-----TTRHRIVGIHTEGAYQA--IYVD------TPGLHM 68 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS-----CCSSCEEEEEEETTEEE--EEES------SSSCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC-----cceeeEEEEEEECCeeE--EEEE------CcCCCc
Confidence 4489999999999999999999863 2221 1110 11133467777754311 1111 111110
Q ss_pred HHHHHHHHHcCHHHHHHhCCC---Ccccc---cCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCcCCCCCHHH-HHHHH
Q 017091 239 EDIEWAAKQAYVHEFILSLPC---GYETL---VDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSES-EHYVK 309 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~---~~~~~---~~~~~LSgGq~QRv~iAral~--~~p~illlDEPts~LD~~~-~~~i~ 309 (377)
.....+.. .+...... ..+.. +....+|+|++ .+++++. ..|.++++ +.+|... ...+.
T Consensus 69 -~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 69 -EEKRAINR----LMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp -HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred -cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 00111110 11111011 11111 11223898886 5566666 78999998 7888876 56677
Q ss_pred HHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 310 GVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
+.+.++.+.......+.+++|+-..+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 777777643211236667777765543
No 199
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.15 E-value=1.1e-06 Score=84.71 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988874
No 200
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.14 E-value=2.6e-07 Score=89.69 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=48.7
Q ss_pred cccEEEEEEEEEcCCCCCCCcee--------------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 129 MGHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~--------------~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.+.|+||++.|+.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3468999999999864 46888 899999999999999999999999999999876
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.11 E-value=8.4e-06 Score=80.78 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
++.+++++||+||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888898866664
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.08 E-value=2.9e-06 Score=81.58 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~ 188 (377)
.++..+.|.||+|+|||||++.+++...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999998776543
No 203
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.08 E-value=4.7e-07 Score=92.62 Aligned_cols=60 Identities=10% Similarity=0.208 Sum_probs=48.7
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
++++.+.|.. ..+++++++++ +|+.++|+||||||||||+++|++...+..|.|.++|..
T Consensus 86 ~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 86 LEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp CHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 4455555532 24788888888 899999999999999999999999999999999887743
No 204
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.04 E-value=5.5e-07 Score=96.28 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=28.6
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
|.+++|+.+.|+||||||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999999999874
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.03 E-value=3.7e-05 Score=71.69 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH----------HHHHHHHHHHHhhccC-CCCeEEEEEecCchh-----
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSE----------SEHYVKGVLHALRNDC-KTKRTVIVIAHRLST----- 334 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~----------~~~~i~~~l~~l~~~~-~~g~tvi~itH~l~~----- 334 (377)
+++++.|..++++...+|.+|++||+.+-++.. ....++..+....... ..+..+|.+|++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467778888888888899999999998876542 2223333333331100 023567778887643
Q ss_pred HHhcCeEEEEe
Q 017091 335 IKAVDRIVVID 345 (377)
Q Consensus 335 ~~~~d~v~~l~ 345 (377)
..++++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 23477766654
No 206
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.03 E-value=6.6e-06 Score=81.88 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCCCEEEEeCcCCCCCH-HHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 017091 286 RDPAILLLDEATSALDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332 (377)
Q Consensus 286 ~~p~illlDEPts~LD~-~~~~~i~~~l~~l~~~~~~g~tvi~itH~l 332 (377)
.+|++|++||+..-.+. .++..+...+..+.. .|+.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~---~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT---TTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEECCC
Confidence 48999999999887764 677778888887653 478899999984
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.03 E-value=6.2e-07 Score=86.33 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=46.8
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4889999999999999999999999999999999999888888888766653
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.98 E-value=1.2e-06 Score=75.84 Aligned_cols=40 Identities=30% Similarity=0.314 Sum_probs=33.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC--eEEECCEeC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPL 198 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~i 198 (377)
.+|++++|+|++||||||++++|.+.++| .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46899999999999999999999998866 56 666676544
No 209
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.98 E-value=2.7e-06 Score=72.82 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
.|++++|+|||||||||++++|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998753 45554
No 210
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.97 E-value=2.2e-05 Score=74.60 Aligned_cols=130 Identities=14% Similarity=0.215 Sum_probs=75.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
+.|+.+.--+++|+++.|.|++|+|||||+..++.-.-- .| ..+.|+.-+ ++..+-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE-----~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE-----MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----CCHHHH
Confidence 467777766999999999999999999999877742210 11 124443322 121111
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCC--CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
. .++........+..+.. .. ||.++++|+..|...+.++++++.|+|...++
T Consensus 112 ~----------~R~~~~~~~i~~~~l~~------------~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~---- 165 (315)
T 3bh0_A 112 I----------KRLIVTAGSINAQKIKA------------ARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVN---- 165 (315)
T ss_dssp H----------HHHHHHHTTCCHHHHHS------------CHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHH----
T ss_pred H----------HHHHHHHcCCCHHHHhc------------CCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHH----
Confidence 0 00000000111222110 12 78899999999988888889999998864432
Q ss_pred HHHHHHHHHhhccCCCCeE--EEEEec
Q 017091 306 HYVKGVLHALRNDCKTKRT--VIVIAH 330 (377)
Q Consensus 306 ~~i~~~l~~l~~~~~~g~t--vi~itH 330 (377)
.+...++++.++ .+.. +|+|-|
T Consensus 166 -~i~~~i~~l~~~--~~~~~~lVVID~ 189 (315)
T 3bh0_A 166 -YIWSKTRQTKRK--NPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHT--SSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHh--cCCCCeEEEEeC
Confidence 344445555432 2455 777754
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.95 E-value=4.1e-06 Score=83.27 Aligned_cols=68 Identities=31% Similarity=0.381 Sum_probs=40.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI 228 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni 228 (377)
.++|+|+||+|||||++.|+|... |.+|.+.++|.++.-++..-.++..++.+|....| ..+..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999854 67899999998664333222334445555655444 23444454
Q ss_pred h
Q 017091 229 M 229 (377)
Q Consensus 229 ~ 229 (377)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 3
No 212
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.89 E-value=8.2e-05 Score=67.23 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 189 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G 189 (377)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999997766555
No 213
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.88 E-value=3.2e-06 Score=81.57 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=36.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
+++.+++|+|++|||||||++.|.|.+.|.+|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 356799999999999999999999999999999988776654
No 214
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.88 E-value=6e-06 Score=74.86 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=32.4
Q ss_pred ceeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC
Q 017091 149 ILNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194 (377)
Q Consensus 149 vL~~isl~i~---~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~ 194 (377)
-|.++|+++. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3666666665 8999999999999999999999999887 6666543
No 215
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.86 E-value=8.1e-06 Score=68.95 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=25.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 999999999999999999873
No 216
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.80 E-value=3.5e-06 Score=75.04 Aligned_cols=43 Identities=28% Similarity=0.247 Sum_probs=37.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC--eEEECCEe
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFP 197 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~ 197 (377)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+++.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45678999999999999999999999999988888 78887543
No 217
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.80 E-value=4.4e-06 Score=73.41 Aligned_cols=57 Identities=21% Similarity=0.440 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--------CCCCCCeEEECCEe
Q 017091 138 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFP 197 (377)
Q Consensus 138 ~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--------~~p~~G~I~i~g~~ 197 (377)
+++|++- ..+++++|+..+++ .++++|++|+|||||++.+.+- ..++.+.+.++|..
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 4566653 36899999998887 5789999999999999999862 22345666666643
No 218
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.79 E-value=3.4e-05 Score=72.57 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999865
No 219
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.77 E-value=7.8e-06 Score=80.84 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=50.6
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 200 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 200 (377)
..+++++.|+.. . ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|+..
T Consensus 78 v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 78 VYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 345667778642 1 678888 899999999999999999999999999999999998877643
No 220
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.72 E-value=2.2e-05 Score=68.38 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=27.1
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC----CCC----CCCeEEECCE
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL----YEP----SDGQIYIDGF 196 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl----~~p----~~G~I~i~g~ 196 (377)
.+++++|++.++. .++++|++|+|||||++.+.+- +.| +.+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 3789999988877 7899999999999999999972 223 3455556654
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.71 E-value=5.4e-05 Score=71.66 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
+..+.|.||+|+|||||++.+++...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999999999986643
No 222
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.71 E-value=3.6e-05 Score=69.60 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=74.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD 235 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~ 235 (377)
+..|+.++++||+||||||++.++........|. ...++++.+.|... ..++.+++.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3568999999999999999988764321111110 12467777777654 456677765321111
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccccC--C---CCCChHHHHHHHHHHHHcCCCCEEEEeCcCC-CCCHHHHHHHH
Q 017091 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVD--D---DLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVK 309 (377)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~---~~LSgGq~QRv~iAral~~~p~illlDEPts-~LD~~~~~~i~ 309 (377)
... ..+. . ...+.... . .-.+.|...+.. +..+.+-+++++||+-. ++|........
T Consensus 137 ~~~--------~~g~-----~--~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 137 PGK--------SCGY-----S--VRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp TTS--------SEEE-----E--ETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred cCc--------eEEE-----e--echhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHH
Confidence 000 0000 0 00000000 0 013567666653 34689999999999976 57776553333
Q ss_pred HHHHHhhccCCCCeEEEE-EecCchhH
Q 017091 310 GVLHALRNDCKTKRTVIV-IAHRLSTI 335 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~-itH~l~~~ 335 (377)
+.+.... ..-.++++ .|.+.+.+
T Consensus 200 ~~i~~~~---~~~~~il~SAT~~~~~~ 223 (235)
T 3llm_A 200 RDVVQAY---PEVRIVLMSATIDTSMF 223 (235)
T ss_dssp HHHHHHC---TTSEEEEEECSSCCHHH
T ss_pred HHHHhhC---CCCeEEEEecCCCHHHH
Confidence 3333321 11234444 34555544
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.67 E-value=2.6e-05 Score=66.77 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999865
No 224
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.65 E-value=6.7e-06 Score=72.77 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
...+|.+++|+||||||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998764
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=7.3e-06 Score=77.32 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=49.9
Q ss_pred EEEEEEEEcCCCCCCCceee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC
Q 017091 133 QFVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 200 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~-isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 200 (377)
..+++...|++. . ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 76 ~~~~l~~~~~~~---~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 76 VYDELSNLFGGD---K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHHTTCS---C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHHhccc---c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345566667542 1 56 788876 99999999999999999999999999888999988777643
No 226
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.58 E-value=0.00048 Score=66.50 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=28.8
Q ss_pred CceeeeeE---EEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 148 PILNHVCL---TIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 148 ~vL~~isl---~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.|+.+ + -+++|+++.|.||+|||||||...++.-.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555 3 38899999999999999999998777543
No 227
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.57 E-value=0.00017 Score=66.63 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.++..+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566789999999999999999998754
No 228
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=2.8e-06 Score=81.34 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=43.2
Q ss_pred CceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 148 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.+.+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 589999999999998 999999999999999999999877776655444443
No 229
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.56 E-value=3.5e-05 Score=66.98 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 230
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.55 E-value=2.7e-05 Score=67.56 Aligned_cols=40 Identities=38% Similarity=0.542 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE-EECC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDG 195 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g 195 (377)
...+|.+++|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999988777766 3443
No 231
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.53 E-value=4.8e-05 Score=67.51 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=24.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3456666664 99999999999999999886
No 232
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.52 E-value=5.9e-05 Score=66.16 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
..+.|.||+|+|||||++.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999997654
No 233
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.51 E-value=6.2e-06 Score=75.06 Aligned_cols=55 Identities=29% Similarity=0.259 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---hCCCCCCCeEE--------ECCEeCCCCC-HHHHhcceEEEc
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPLTDLD-IRWLREKIGFVG 214 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~--------i~g~~i~~~~-~~~~r~~i~~v~ 214 (377)
.-+++|.||+||||||+.+.|+ |+...+.|.++ -.|.++.... ..++...+.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~ 75 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGV 75 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEE
Confidence 3489999999999999999998 65556666662 3455544321 223444555655
No 234
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.49 E-value=6.7e-06 Score=79.69 Aligned_cols=57 Identities=28% Similarity=0.286 Sum_probs=36.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
+.+.++|++..|+. +.++++++|+| +|+|++|+|||||++.|.|...+..|.+..++
T Consensus 16 ~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 45888999888864 35889999977 99999999999999999988666666554444
No 235
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.49 E-value=4.5e-05 Score=68.07 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987554
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.45 E-value=0.00011 Score=62.21 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
No 237
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.42 E-value=7.5e-05 Score=64.15 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 238
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=3.3e-05 Score=73.57 Aligned_cols=43 Identities=12% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
+++++++|| ...+++.....+.+.+.+.. ....+|++|++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~----~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS----GVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT----TTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC----CCceEEEEeCchhh
Confidence 678999999 67899988888888887653 34567778877654
No 239
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.40 E-value=7e-05 Score=65.77 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 240
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.39 E-value=0.00074 Score=67.00 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=92.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcce-EEEccCCcCccccHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDIK 225 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~tv~ 225 (377)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.-.....| .+.+-.. ..+..++..++ +.... +-...++
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl---E~~~~~l~~R~~~~~~~---i~~~~l~ 261 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL---EMPAAQLTLRMMCSEAR---IDMNRVR 261 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES---SSCHHHHHHHHHHHHTT---CCTTTCC
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC---CCCHHHHHHHHHHHHcC---CCHHHHh
Confidence 467777766999999999999999999999888765432223 3333221 12333332221 00000 0000000
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCcCCCCCH-
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS- 302 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~illlDEPts~LD~- 302 (377)
-+ ..++++.....+. .+.+...|.-. .....+|..+. .+.+|.+. .+|+++++|..+.-.+.
T Consensus 262 ----~g---~l~~~~~~~~~~a---~~~l~~~~l~i---~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~ 326 (444)
T 2q6t_A 262 ----LG---QLTDRDFSRLVDV---ASRLSEAPIYI---DDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPG 326 (444)
T ss_dssp ----GG---GCCHHHHHHHHHH---HHHHHTSCEEE---ECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-
T ss_pred ----CC---CCCHHHHHHHHHH---HHHHhcCCEEE---ECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCc
Confidence 00 1223332222211 12222222111 11234676654 44556665 58999999999865543
Q ss_pred -----HH----HHHHHHHHHHhhccCCCCeEEEEEecC-----------c--h------hHH-hcCeEEEEe
Q 017091 303 -----ES----EHYVKGVLHALRNDCKTKRTVIVIAHR-----------L--S------TIK-AVDRIVVID 345 (377)
Q Consensus 303 -----~~----~~~i~~~l~~l~~~~~~g~tvi~itH~-----------l--~------~~~-~~d~v~~l~ 345 (377)
.+ ...+...|+.+.++ .+.+||+++|- + + .+. .||.|++|.
T Consensus 327 ~~~~~~~r~~~i~~i~~~Lk~lAke--~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 327 SGKSGENRQQEIAAISRGLKALARE--LGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH--HTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 11 23455556666553 47899999981 1 1 234 389999985
No 241
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.38 E-value=4.1e-05 Score=67.35 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
..+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999998865 4556655443
No 242
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.38 E-value=7.4e-05 Score=73.08 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=33.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhC-----------CCCCCCeEEECCE
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRL-----------YEPSDGQIYIDGF 196 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-----------~~p~~G~I~i~g~ 196 (377)
.+..|..++|+|++|+|||||++.|+|. ..|..|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788888887663
No 243
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.32 E-value=4.9e-05 Score=69.64 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=33.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
...++.++.|+|++||||||+.+.|+..+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456678999999999999999999998764 35677777554
No 244
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.31 E-value=8.6e-05 Score=64.36 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEe
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFP 197 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~ 197 (377)
.+++|+|+||||||||++.|.+.+++. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 589999999999999999999876543 3667766544
No 245
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.29 E-value=0.00038 Score=61.48 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.+|.+|++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP----PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC----CCceEEEEEeCChHhC
Confidence 4688999999865 7887776666666543 2467788899887644
No 246
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.28 E-value=0.00012 Score=62.97 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPS 187 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~ 187 (377)
.++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
No 247
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.23 E-value=0.00015 Score=66.25 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=28.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 196 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~ 196 (377)
.++++++.+++| +.|+||+|+|||||++.|++..... -+.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 455555555555 8999999999999999999876421 2445443
No 248
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.22 E-value=4.9e-05 Score=73.12 Aligned_cols=37 Identities=38% Similarity=0.445 Sum_probs=33.6
Q ss_pred CceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhhCC
Q 017091 148 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999999864
No 249
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.16 E-value=0.00018 Score=62.04 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 250
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.09 E-value=0.00028 Score=63.70 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=27.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhh---CCCCCCCeEE
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLR---LYEPSDGQIY 192 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~g---l~~p~~G~I~ 192 (377)
=.+|.+++|+|++||||||+.+.|++ +..++.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 45688999999999999999999986 3334555543
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.08 E-value=0.00031 Score=60.03 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997664
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.05 E-value=0.00031 Score=59.44 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 253
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.04 E-value=0.00027 Score=68.80 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=45.5
Q ss_pred CCCCEEEEeCcCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH-------------HhcCeEEEEeCC
Q 017091 286 RDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------KAVDRIVVIDDG 347 (377)
Q Consensus 286 ~~p~illlDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-------------~~~d~v~~l~~G 347 (377)
..|.++++||.-.-++ +.....+.+.+++.++ .|..++++||+++.+ ..|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk---~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK---YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG---GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh---hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3589999999999985 6677778888888764 488999999998754 236677777543
No 254
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.04 E-value=0.0025 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+.-+.|.||+|+|||++.+.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 456689999999999999999987654
No 255
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.01 E-value=0.00034 Score=66.98 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 256
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.01 E-value=0.00037 Score=67.54 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=27.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
.+++..+++.+| +.+|+|||||||||++-+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 357788888775 99999999999999999886
No 257
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.96 E-value=0.00041 Score=60.41 Aligned_cols=32 Identities=38% Similarity=0.397 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
.+++|+|++||||||+.+.|+.. |-..++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 57999999999999999999985 666666543
No 258
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.96 E-value=0.00038 Score=60.62 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 259
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.94 E-value=0.00046 Score=59.36 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998744
No 260
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.94 E-value=0.00081 Score=57.93 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh-C----CCCCCC----eEEECCEe
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR-L----YEPSDG----QIYIDGFP 197 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g-l----~~p~~G----~I~i~g~~ 197 (377)
.++|+|++|+|||||++.+.+ . +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 589999999999999976554 3 456655 55566643
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.90 E-value=0.00013 Score=64.39 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPS 187 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~ 187 (377)
+++|.|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887643
No 262
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.90 E-value=0.00051 Score=60.92 Aligned_cols=32 Identities=44% Similarity=0.512 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
.+-+++|+|++||||||+.+.|..+ |-..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3468999999999999999999983 5445543
No 263
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.90 E-value=0.0045 Score=59.41 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+...+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456689999999999999999998754
No 264
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.89 E-value=0.0039 Score=60.29 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999977664
No 265
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.86 E-value=0.00087 Score=64.74 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhh-----------CCCCCCCeEEECC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLR-----------LYEPSDGQIYIDG 195 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~g-----------l~~p~~G~I~i~g 195 (377)
|-.++|+|.+|+|||||++.|.+ -..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45789999999999999999998 3467788887766
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.86 E-value=0.00052 Score=57.79 Aligned_cols=19 Identities=58% Similarity=0.976 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLL 180 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l 180 (377)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 267
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.86 E-value=0.00047 Score=59.51 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998643
No 268
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.84 E-value=0.00064 Score=63.50 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
.+..+.|+|||||||||+.+.|+.-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987543 35677765
No 269
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.84 E-value=0.00013 Score=72.64 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.|.+....+...+.+++++|+..... ++... ...+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~------~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR------TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT------CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH------cCCCEEEEEECccch
Confidence 46677777888888899888866554 34444 3445554432 367788888877654
No 270
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.82 E-value=0.00056 Score=59.87 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+.|+||||||||||++.|..-
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999988754
No 271
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.82 E-value=0.00065 Score=58.40 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998644
No 272
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.80 E-value=0.00059 Score=58.54 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 273
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.79 E-value=0.0004 Score=59.59 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998443
No 274
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.78 E-value=0.00084 Score=58.52 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|-+++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 275
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.74 E-value=0.007 Score=60.00 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.6
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35665554689999999999999999999876664
No 276
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.74 E-value=0.0007 Score=61.99 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 277
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.70 E-value=0.0008 Score=57.49 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.00095 Score=56.78 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 279
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.65 E-value=0.00098 Score=58.47 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+|.+++|+|+.||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 280
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.65 E-value=0.00091 Score=57.82 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.65 E-value=0.001 Score=58.22 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654
No 282
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.61 E-value=0.0015 Score=61.67 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=30.6
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
..+++..+.+ .|.-++|+|+||+||||+...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4788888888 789999999999999999999987
No 283
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.59 E-value=0.0011 Score=58.17 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|.+++|+|+.||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998643
No 284
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.59 E-value=0.0075 Score=68.64 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 191 (377)
+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999999887654433443
No 285
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.54 E-value=0.00092 Score=57.54 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
.+++|+|++|||||||+..|++.+++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987653
No 286
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.54 E-value=0.0013 Score=56.67 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987543
No 287
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.52 E-value=0.00045 Score=59.97 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++++.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998654
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.52 E-value=0.0012 Score=56.69 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987553
No 289
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.51 E-value=0.0013 Score=57.35 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 290
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.48 E-value=0.0011 Score=61.80 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 191 (377)
..+.|+||+|+||||+++.|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887766643
No 291
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.48 E-value=0.0091 Score=57.25 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+..-+.|.||.|+|||||++.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445568999999999999999999754
No 292
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.47 E-value=0.0014 Score=56.58 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 293
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.45 E-value=0.0013 Score=60.51 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=31.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEE
Q 017091 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV 342 (377)
Q Consensus 296 Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~ 342 (377)
|||+.+......+.+.+.+.... ...+..+..|..+.++. ++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~--~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEG--KVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHT--CCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhc--cccCCCCCcCCCHHHHHHHHHHH
Confidence 99999999988888888776542 23444566677776654 55543
No 294
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.43 E-value=0.0012 Score=56.56 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998544
No 295
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.39 E-value=0.0044 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+.-.++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 296
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.36 E-value=0.041 Score=54.36 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
++.+++++|++||||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45799999999999999999999877654335544
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.36 E-value=0.0021 Score=57.06 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998654
No 298
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.34 E-value=0.0019 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996543
No 299
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.002 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
=.++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999865
No 300
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.32 E-value=0.0022 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 301
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0038 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 302
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.30 E-value=0.0021 Score=57.42 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 303
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.29 E-value=0.0022 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 304
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.27 E-value=0.0017 Score=56.49 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999754
No 305
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.27 E-value=0.0025 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+-+++|+|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998644
No 306
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.27 E-value=0.0022 Score=55.12 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 307
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.27 E-value=0.0019 Score=54.67 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 308
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.25 E-value=0.0024 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 309
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.25 E-value=0.0036 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 310
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.24 E-value=0.0023 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997544
No 311
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.22 E-value=0.0026 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 312
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.22 E-value=0.0026 Score=52.56 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999754
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.22 E-value=0.0023 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 314
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.22 E-value=0.002 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998754
No 315
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.21 E-value=0.002 Score=55.24 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 316
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.21 E-value=0.0026 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 317
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.20 E-value=0.0025 Score=55.87 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-+++|+|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999865
No 318
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.18 E-value=0.0027 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 319
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.17 E-value=0.0022 Score=57.01 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.17 E-value=0.0026 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..+++|+|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998544
No 321
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.17 E-value=0.0029 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 322
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.16 E-value=0.0025 Score=54.68 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998643
No 323
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.16 E-value=0.0027 Score=52.94 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998654
No 324
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.16 E-value=0.0027 Score=58.21 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999874
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.15 E-value=0.0026 Score=57.81 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998743
No 326
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.14 E-value=0.0026 Score=58.85 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 327
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.14 E-value=0.003 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988743
No 328
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.14 E-value=0.003 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 329
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.13 E-value=0.003 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 330
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.13 E-value=0.0028 Score=57.62 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.|+|--
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999854
No 331
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.12 E-value=0.0028 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 332
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.11 E-value=0.0015 Score=61.19 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
No 333
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.11 E-value=0.0032 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 334
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.10 E-value=0.0031 Score=57.78 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++.++.|+|++||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999865
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.08 E-value=0.003 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 336
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.08 E-value=0.0062 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 337
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.07 E-value=0.0029 Score=53.28 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 338
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.07 E-value=0.0028 Score=54.39 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 339
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.07 E-value=0.00024 Score=75.90 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=36.9
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
.++.+.+++.+.|+||+|+|||||+++|++... .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 466788999999999999999999999999874 345666666553
No 340
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.05 E-value=0.0036 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.++|+|++|+|||||++.+.|-..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999998764
No 341
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.04 E-value=0.0033 Score=56.97 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++-+++|+||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
No 342
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.04 E-value=0.003 Score=54.00 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 78999999999999999998764
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.02 E-value=0.0036 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 344
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.01 E-value=0.0037 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999863
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.00 E-value=0.0038 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 346
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.98 E-value=0.0038 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 347
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.97 E-value=0.0038 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.97 E-value=0.0039 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.++++|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999763
No 349
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.97 E-value=0.035 Score=53.64 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++..+.|.||+|+|||+|++.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999865
No 350
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.97 E-value=0.0034 Score=58.32 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
-+++|+|++||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 351
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.96 E-value=0.025 Score=56.73 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++..-+.|.||+|+|||++++.++...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998743
No 352
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.96 E-value=0.0041 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999975
No 353
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.96 E-value=0.0033 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 354
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.94 E-value=0.0043 Score=52.19 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 355
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.91 E-value=0.004 Score=52.30 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 356
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0044 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 357
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.89 E-value=0.0034 Score=57.87 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987653
No 358
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.88 E-value=0.0045 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 359
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.88 E-value=0.0041 Score=58.39 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+++|+|++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 360
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.88 E-value=0.0045 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 361
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.87 E-value=0.0045 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 362
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.86 E-value=0.0026 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhh
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999874
No 363
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.86 E-value=0.0044 Score=55.23 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997544
No 364
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.86 E-value=0.0022 Score=63.82 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=34.7
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
.+++.+ +.+-+|+..+|+|++|+|||||++.|++-.....|.|.+
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 355555 678899999999999999999999998765544444443
No 365
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.84 E-value=0.0049 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 366
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.84 E-value=0.016 Score=57.96 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=53.4
Q ss_pred CCCChHHHHHHHHHHHHc--C---------------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 268 DLLSGGQKQRIAIARAIL--R---------------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~--~---------------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
..+||||+|-.-+|.+.. + .=.+++|||+ +-+|.+..+..+++++++ |.-+|++|=
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l------glQliiatP 450 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL------DMQLLIAAP 450 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc------CCEEEEECc
Confidence 458999999654444332 2 1257999999 999999999999999987 777888988
Q ss_pred CchhHHhcCeEEEEe
Q 017091 331 RLSTIKAVDRIVVID 345 (377)
Q Consensus 331 ~l~~~~~~d~v~~l~ 345 (377)
+ .....+|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 7 3334588888774
No 367
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.79 E-value=0.0042 Score=60.09 Aligned_cols=22 Identities=55% Similarity=0.715 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
No 368
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.79 E-value=0.0057 Score=51.71 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+..+.|+||.|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987653
No 369
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.79 E-value=0.0048 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.76 E-value=0.0052 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 371
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.75 E-value=0.0049 Score=57.93 Aligned_cols=22 Identities=55% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+++|+|+.|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999985
No 372
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.75 E-value=0.0054 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 373
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.75 E-value=0.005 Score=54.57 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
No 374
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.74 E-value=0.0055 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 375
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.74 E-value=0.0055 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
No 376
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.74 E-value=0.0054 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 377
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.74 E-value=0.0049 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998644
No 378
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.72 E-value=0.0052 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 379
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.72 E-value=0.005 Score=55.93 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 380
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.71 E-value=0.0048 Score=55.61 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=22.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
..+|.++.|.|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987664
No 381
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.71 E-value=0.0057 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 382
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0054 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 383
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.69 E-value=0.0056 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.=.++++|++|+|||||++.+.+-
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
No 384
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.0055 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999873
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.68 E-value=0.006 Score=51.57 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 386
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.68 E-value=0.0083 Score=52.92 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=28.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
..++..-+.+ .|..+.|+||+|||||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566666554 5789999999999999999988754
No 387
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.67 E-value=0.0061 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 388
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.67 E-value=0.006 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 389
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.66 E-value=0.0061 Score=56.06 Aligned_cols=30 Identities=40% Similarity=0.464 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCe
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~ 190 (377)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999876654443
No 390
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.65 E-value=0.0033 Score=55.32 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
No 391
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.63 E-value=0.0059 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999999754
No 392
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.006 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 393
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.61 E-value=0.0066 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 394
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.61 E-value=0.005 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 395
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.61 E-value=0.0066 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 396
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.61 E-value=0.0072 Score=57.64 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++.++.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999997663
No 397
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.60 E-value=0.0062 Score=51.49 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.60 E-value=0.006 Score=58.26 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987653
No 399
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.60 E-value=0.0068 Score=53.99 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
-+|.+++|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987664
No 400
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.57 E-value=0.0063 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.|++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988753
No 401
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.57 E-value=0.0067 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 402
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.56 E-value=0.0065 Score=56.39 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.55 E-value=0.0077 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998654
No 404
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.54 E-value=0.0064 Score=56.14 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 405
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.54 E-value=0.0062 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 406
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.54 E-value=0.0066 Score=53.91 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 407
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.54 E-value=0.0072 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 408
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.53 E-value=0.0073 Score=51.72 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 409
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0068 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
=.++|+|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 410
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0075 Score=51.98 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 411
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.51 E-value=0.0074 Score=54.65 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 412
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0076 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 413
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.50 E-value=0.082 Score=61.12 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+++|+++.|.||+|+|||||+..++.-..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999887765443
No 414
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.50 E-value=0.0076 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
No 415
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.50 E-value=0.0069 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 416
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.49 E-value=0.0068 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 417
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.49 E-value=0.0068 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 418
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.49 E-value=0.14 Score=51.25 Aligned_cols=34 Identities=29% Similarity=0.234 Sum_probs=27.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
.|+.+.--+++|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555543589999999999999999999866653
No 419
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.49 E-value=0.0076 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 420
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.48 E-value=0.009 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 421
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.48 E-value=0.0053 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998654
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.47 E-value=0.0073 Score=59.31 Aligned_cols=27 Identities=44% Similarity=0.578 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-.+..++.|+|++||||||+.+.|+.-
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999999998763
No 423
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.47 E-value=0.0061 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 424
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0073 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999743
No 425
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.45 E-value=0.0064 Score=51.70 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.45 E-value=0.008 Score=56.78 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.+++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 427
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.44 E-value=0.0079 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.++|+|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999988543
No 428
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.42 E-value=0.0071 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 429
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.41 E-value=0.0086 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888754
No 430
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.39 E-value=0.0073 Score=51.01 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987654
No 431
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.39 E-value=0.0079 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999975
No 432
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.38 E-value=0.0091 Score=53.16 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 433
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.37 E-value=0.0086 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 434
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.34 E-value=0.012 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998654
No 435
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.34 E-value=0.009 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 436
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.33 E-value=0.0093 Score=56.18 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
-+++|+++.|.||+|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999988774
No 437
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.33 E-value=0.0084 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 438
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.31 E-value=0.009 Score=56.65 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..++|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
No 439
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.30 E-value=0.01 Score=53.60 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..-+.|.||+|+||||+++.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998743
No 440
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.30 E-value=0.0088 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 441
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.30 E-value=0.0086 Score=54.70 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999843
No 442
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.27 E-value=0.01 Score=53.34 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+|.++++.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999987654
No 443
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.27 E-value=0.006 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=9.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
No 444
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.27 E-value=0.01 Score=53.03 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
.+|.++.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987764
No 445
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.27 E-value=0.0088 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999754
No 446
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.0095 Score=53.56 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
|.+++|.|+.||||||+.+.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999997653
No 447
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.23 E-value=0.043 Score=57.95 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.+.||+|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 448
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.23 E-value=0.0081 Score=53.70 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=24.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++..++.|+||.||||+|..+.|+--+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998544
No 449
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.22 E-value=0.0085 Score=55.34 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 450
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.22 E-value=0.013 Score=52.21 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=37.3
Q ss_pred cCCCCEEEEeCcCC----CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch----------hHHh-cCeEEEEe
Q 017091 285 LRDPAILLLDEATS----ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS----------TIKA-VDRIVVID 345 (377)
Q Consensus 285 ~~~p~illlDEPts----~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~----------~~~~-~d~v~~l~ 345 (377)
-.+|+++++|--+. .-|.....++...|+.+.++ .+.++++++|-.. .... ||-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~--~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE--MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH--HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHH--cCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35899999996542 11344445556666666543 4889999988432 1233 89888885
No 451
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.01 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 452
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.19 E-value=0.016 Score=49.92 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=25.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++..-+. -.|.-+.|.|+||+|||||...+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444444 4588999999999999999987764
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.19 E-value=0.0088 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
=.++|+|+.|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999964
No 454
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.18 E-value=0.003 Score=57.58 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=24.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+.++++..+.| +.|.||+|+|||||++.++..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33444444555 789999999999999999974
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.012 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 456
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.11 E-value=0.011 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999998888653
No 457
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.10 E-value=0.1 Score=59.45 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=27.7
Q ss_pred ceeeeeE--EEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 149 ILNHVCL--TIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 149 vL~~isl--~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-|+.+-= -+++|+++.|.||+|+|||||...++.-
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4555521 3899999999999999999998776643
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.01 E-value=0.0077 Score=55.00 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++.+++|.|+.||||||+.+.|...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467799999999999999999998766
No 459
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.98 E-value=0.013 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 460
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.96 E-value=0.0058 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998854
No 461
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.96 E-value=0.013 Score=51.07 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999988875
No 462
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.96 E-value=0.014 Score=55.05 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
...++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.93 E-value=0.0038 Score=61.69 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
.+++++|++|+||||++..|++.+.....+|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999999876444456554433
No 464
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.015 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 465
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.86 E-value=0.015 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 466
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.85 E-value=0.0088 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
=.++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999854
No 467
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.83 E-value=0.0063 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=4.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988764
No 468
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.70 E-value=0.014 Score=50.49 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-----------hHHhcCeEEEEe
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-----------TIKAVDRIVVID 345 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~-----------~~~~~d~v~~l~ 345 (377)
+++++++||.-- +|+. +.+.+..+.+ .|..|++..++.+ .+..||.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 678999999854 6543 3445555543 2778888888554 334589987775
No 469
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.69 E-value=0.016 Score=50.38 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 470
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.62 E-value=0.017 Score=56.43 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++|+||+|||||||.+.|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 471
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.60 E-value=0.019 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++.|+||.||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 472
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.48 E-value=0.023 Score=52.74 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G 189 (377)
-.++++|.+|+|||||++.|.|-.....|
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 46899999999999999999987644333
No 473
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.46 E-value=0.02 Score=54.46 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=29.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
.+|..+.|.||+|+|||||++.++.........+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45678999999999999999999987754334444444
No 474
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.46 E-value=0.022 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..+.|.||+|+|||||++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999888765
No 475
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.40 E-value=0.021 Score=49.40 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
.+|.++++||. ..+++.....+.+.+.+. ..+..+|++|++...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~----~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY----SKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT----TTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc----CCCCeEEEEeCChhh
Confidence 36899999996 456777777777776654 235667777877654
No 476
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.39 E-value=0.023 Score=50.10 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
No 477
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.36 E-value=0.021 Score=53.46 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+-.++|+|++|+|||||++.+.+-.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3478999999999999999987653
No 478
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.24 E-value=0.017 Score=55.52 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHH---cC--CCCEEEEeCcC
Q 017091 268 DLLSGGQKQRIAIARAI---LR--DPAILLLDEAT 297 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral---~~--~p~illlDEPt 297 (377)
..+|+||+||.+++|+| ++ +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 45899999999999999 76 89999999997
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.21 E-value=0.026 Score=53.26 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+..-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
No 480
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.16 E-value=0.024 Score=54.74 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999986
No 481
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.14 E-value=3.7e-05 Score=71.07 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCE--EEEeCcCCCCCHHH---------HHHHHHHHHHhhccCCCCeEEEEEecCch
Q 017091 269 LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSES---------EHYVKGVLHALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~i--lllDEPts~LD~~~---------~~~i~~~l~~l~~~~~~g~tvi~itH~l~ 333 (377)
.+|+| ||++++++++.+|++ +|+||+|+++|... +....+.+..+. +|+|.+.+.|++.
T Consensus 172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~----~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK----QGLITLEDAMEAS 241 (261)
T ss_dssp CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH----TTSSCHHHHHHHC
T ss_pred ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH----cCCCCHHHHHHHh
Confidence 57889 999999999999999 99999999999863 234555666653 4888888888765
No 482
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.11 E-value=0.025 Score=54.20 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987653
No 483
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.08 E-value=0.028 Score=53.21 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=25.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
--+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999999999999998875
No 484
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.05 E-value=0.019 Score=50.39 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCCEEEEeCcCC-----CCCHHHHHHHHHHHHHh
Q 017091 277 RIAIARAILRDPAILLLDEATS-----ALDSESEHYVKGVLHAL 315 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts-----~LD~~~~~~i~~~l~~l 315 (377)
.-.|++.+..+|.+-..++|+. .+|+...+++.+.++..
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVA 209 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhh
Confidence 3466777777777777766655 56776666666665554
No 485
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.03 E-value=0.023 Score=56.03 Aligned_cols=22 Identities=50% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999884
No 486
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.02 E-value=0.044 Score=49.72 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
.+..+.|.||+|+|||+|++.|......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 3567889999999999999999987643
No 487
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.95 E-value=0.027 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+...+.|.||+|+|||||++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
No 488
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.94 E-value=0.027 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
No 489
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.92 E-value=0.016 Score=57.48 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=28.3
Q ss_pred eeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhhCCCCC
Q 017091 151 NHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPS 187 (377)
Q Consensus 151 ~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~ 187 (377)
+.+.-.++.|.. +.|.||+|+|||||++.|+......
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344444555554 8999999999999999999887543
No 490
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.91 E-value=0.034 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999998654
No 491
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.91 E-value=0.028 Score=53.69 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..+.|.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999876
No 492
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.97 E-value=0.01 Score=51.43 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 689999999999999988764
No 493
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.87 E-value=0.032 Score=51.84 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
...+.|.||+|+|||+|.+.|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999755
No 494
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.84 E-value=0.025 Score=54.51 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++..++++|++|+|||||++.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 57789999999999999999999863
No 495
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.82 E-value=0.036 Score=52.14 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+..-+.|.||+|+|||+|++.++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567899999999999999999875
No 496
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.81 E-value=0.035 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-.+||+|+.||||||+.+.|+.-+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997544
No 497
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.81 E-value=0.031 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..+.|.||+|+||||+++.++..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999766
No 498
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.80 E-value=0.37 Score=43.28 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC-----------chhHHhcCeEEEEe
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-----------LSTIKAVDRIVVID 345 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~-----------l~~~~~~d~v~~l~ 345 (377)
.+.+++++||.--..| ..++.+.+.+ .|+.||+..+| ..++..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~------~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN------AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH------TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh------CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 3344444443 37899999999 23356699998874
No 499
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.79 E-value=0.021 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 500
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.76 E-value=0.048 Score=53.70 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|.+++|||||++.+.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999975
Done!