Query 017092
Match_columns 377
No_of_seqs 326 out of 1474
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:32:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 2.6E-34 5.7E-39 304.1 8.2 234 97-330 216-525 (640)
2 cd05496 Bromo_WDR9_II Bromodom 100.0 4.2E-29 9.1E-34 211.3 10.9 106 102-209 4-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 100.0 9.3E-29 2E-33 206.1 12.2 105 102-206 2-107 (108)
4 cd05497 Bromo_Brdt_I_like Brom 100.0 1.1E-28 2.3E-33 205.4 11.7 101 104-204 6-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 100.0 1.9E-28 4.2E-33 200.3 10.3 95 105-201 2-96 (97)
6 cd05503 Bromo_BAZ2A_B_like Bro 99.9 8.6E-28 1.9E-32 196.6 10.3 96 105-202 2-97 (97)
7 cd05506 Bromo_plant1 Bromodoma 99.9 1E-27 2.2E-32 196.8 10.3 99 104-202 1-99 (99)
8 cd05504 Bromo_Acf1_like Bromod 99.9 1.2E-27 2.6E-32 201.6 10.0 103 101-205 10-112 (115)
9 cd05507 Bromo_brd8_like Bromod 99.9 2.6E-27 5.7E-32 196.2 11.3 101 103-205 3-103 (104)
10 cd05502 Bromo_tif1_like Bromod 99.9 6E-27 1.3E-31 195.6 12.5 103 103-208 4-109 (109)
11 cd05508 Bromo_RACK7 Bromodomai 99.9 4E-27 8.6E-32 193.2 10.4 97 102-201 2-98 (99)
12 cd05498 Bromo_Brdt_II_like Bro 99.9 5.4E-27 1.2E-31 193.5 10.6 98 105-202 2-102 (102)
13 cd05510 Bromo_SPT7_like Bromod 99.9 9.8E-27 2.1E-31 194.9 11.6 102 102-205 6-109 (112)
14 cd05500 Bromo_BDF1_2_I Bromodo 99.9 9.8E-27 2.1E-31 192.4 11.3 99 103-201 4-102 (103)
15 cd05499 Bromo_BDF1_2_II Bromod 99.9 7.6E-27 1.7E-31 192.7 10.5 98 105-202 2-102 (102)
16 cd05501 Bromo_SP100C_like Brom 99.9 1.7E-26 3.6E-31 189.7 11.9 98 105-207 4-101 (102)
17 cd05509 Bromo_gcn5_like Bromod 99.9 1.3E-26 2.8E-31 190.9 11.1 99 104-204 2-100 (101)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 2.3E-26 5E-31 191.4 10.0 100 103-204 1-106 (107)
19 cd05528 Bromo_AAA Bromodomain; 99.9 4.4E-26 9.6E-31 191.1 11.5 104 103-208 3-110 (112)
20 cd05513 Bromo_brd7_like Bromod 99.9 7.1E-26 1.5E-30 185.4 10.3 92 104-197 2-93 (98)
21 cd05511 Bromo_TFIID Bromodomai 99.9 1.5E-25 3.2E-30 188.0 10.1 99 107-207 4-102 (112)
22 cd05512 Bromo_brd1_like Bromod 99.9 1.9E-25 4.2E-30 183.0 10.3 91 105-197 3-93 (98)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 3E-25 6.5E-30 183.5 9.5 96 105-202 2-103 (103)
24 cd05524 Bromo_polybromo_I Brom 99.9 8.6E-25 1.9E-29 183.7 10.2 102 104-207 3-110 (113)
25 cd05515 Bromo_polybromo_V Brom 99.9 1E-24 2.2E-29 180.9 9.5 97 105-203 2-104 (105)
26 cd05520 Bromo_polybromo_III Br 99.9 2.1E-24 4.6E-29 178.4 9.4 82 118-201 21-102 (103)
27 cd05525 Bromo_ASH1 Bromodomain 99.9 3.8E-24 8.2E-29 177.7 10.4 96 104-201 3-104 (106)
28 cd05529 Bromo_WDR9_I_like Brom 99.9 5.9E-24 1.3E-28 182.4 11.8 99 103-203 24-126 (128)
29 cd05518 Bromo_polybromo_IV Bro 99.9 3.1E-24 6.7E-29 177.4 9.4 100 99-201 3-102 (103)
30 smart00297 BROMO bromo domain. 99.9 7.1E-24 1.5E-28 175.5 11.6 101 102-204 6-106 (107)
31 cd05517 Bromo_polybromo_II Bro 99.9 4.6E-24 1E-28 176.4 9.0 93 106-200 3-101 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.9 1.1E-22 2.4E-27 168.4 10.5 82 118-201 22-103 (104)
33 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2E-22 4.4E-27 167.3 10.3 96 104-203 2-103 (106)
34 PF00439 Bromodomain: Bromodom 99.9 1.5E-22 3.3E-27 160.3 8.7 84 108-193 1-84 (84)
35 cd04369 Bromodomain Bromodomai 99.9 3E-22 6.5E-27 161.5 9.3 95 106-202 3-99 (99)
36 cd05492 Bromo_ZMYND11 Bromodom 99.9 1.1E-21 2.3E-26 163.3 11.3 98 108-205 5-106 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.8 7.3E-19 1.6E-23 146.1 9.9 98 104-205 4-107 (110)
38 KOG1245 Chromatin remodeling c 99.7 1.3E-18 2.8E-23 195.7 7.7 98 108-208 1306-1403(1404)
39 COG5076 Transcription factor i 99.7 9.3E-18 2E-22 168.2 9.3 90 119-210 164-253 (371)
40 KOG1472 Histone acetyltransfer 99.7 8.9E-17 1.9E-21 168.8 6.9 142 64-207 563-708 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 1.9E-13 4.2E-18 115.0 4.4 80 103-182 3-89 (114)
42 cd05491 Bromo_TBP7_like Bromod 99.1 3.8E-11 8.3E-16 100.5 3.9 44 142-185 61-104 (119)
43 KOG0955 PHD finger protein BR1 99.1 1.4E-10 3E-15 127.3 6.8 101 104-206 566-666 (1051)
44 KOG0008 Transcription initiati 99.0 2.4E-10 5.3E-15 125.3 5.7 96 107-204 1386-1481(1563)
45 KOG0386 Chromatin remodeling c 98.9 1.3E-09 2.8E-14 117.3 7.0 100 106-207 1027-1132(1157)
46 KOG1827 Chromatin remodeling c 98.8 4.3E-09 9.4E-14 109.9 7.0 97 104-202 53-155 (629)
47 KOG0008 Transcription initiati 98.8 4.6E-09 1E-13 115.5 7.0 100 103-204 1261-1360(1563)
48 KOG1472 Histone acetyltransfer 98.8 2.6E-09 5.6E-14 113.1 4.4 82 117-200 300-381 (720)
49 KOG1474 Transcription initiati 98.6 7.9E-09 1.7E-13 110.5 1.1 91 115-205 4-94 (640)
50 KOG1828 IRF-2-binding protein 98.2 3.9E-07 8.5E-12 89.7 0.0 89 110-200 26-114 (418)
51 KOG1828 IRF-2-binding protein 98.0 3.2E-06 7E-11 83.3 3.1 82 112-196 217-298 (418)
52 COG5076 Transcription factor i 97.2 0.00012 2.5E-09 73.8 0.7 88 114-203 274-361 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 97.0 0.0011 2.3E-08 57.0 4.5 68 145-212 59-126 (131)
54 KOG0644 Uncharacterized conser 90.7 0.21 4.6E-06 54.4 3.5 60 142-201 1050-1109(1113)
55 KOG0732 AAA+-type ATPase conta 86.8 0.42 9E-06 53.9 2.5 64 121-184 533-601 (1080)
56 KOG0644 Uncharacterized conser 72.6 2 4.2E-05 47.3 1.7 66 125-193 87-182 (1113)
57 KOG1827 Chromatin remodeling c 71.0 0.57 1.2E-05 50.0 -2.7 76 121-198 213-288 (629)
58 PF14372 DUF4413: Domain of un 58.0 32 0.00069 28.0 5.8 49 157-205 3-51 (101)
59 PF11116 DUF2624: Protein of u 49.7 24 0.00051 28.2 3.6 72 260-331 8-83 (85)
60 PHA01750 hypothetical protein 49.7 29 0.00063 26.3 3.8 29 24-52 42-70 (75)
61 TIGR02606 antidote_CC2985 puta 45.2 29 0.00064 26.3 3.4 27 149-175 12-38 (69)
62 PF04472 DUF552: Protein of un 40.7 1.1E+02 0.0023 23.2 6.0 44 285-336 10-53 (73)
63 PF03693 RHH_2: Uncharacterise 29.9 63 0.0014 25.3 3.2 26 149-174 15-40 (80)
64 PF04508 Pox_A_type_inc: Viral 25.3 1.1E+02 0.0023 18.5 2.8 17 25-41 2-18 (23)
65 PF10046 BLOC1_2: Biogenesis o 21.9 1.6E+02 0.0035 23.8 4.4 32 24-55 59-90 (99)
66 PF10078 DUF2316: Uncharacteri 20.7 66 0.0014 25.9 1.7 25 314-338 48-72 (89)
67 PRK08898 coproporphyrinogen II 20.3 1.9E+02 0.0042 29.2 5.5 45 281-325 86-130 (394)
68 PF10845 DUF2576: Protein of u 20.2 1.3E+02 0.0029 21.1 2.9 22 25-46 12-33 (48)
69 PF15384 DUF4610: Domain of un 20.1 2.1E+02 0.0045 26.4 4.9 60 24-85 111-172 (197)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=2.6e-34 Score=304.09 Aligned_cols=234 Identities=35% Similarity=0.540 Sum_probs=171.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Q 017092 97 AEKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (377)
Q Consensus 97 ~~~~~~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (377)
..+.+.+++++|..||..|+.|+++|||..|||+..||+||||+||++||||+||+.||.+|.|.++.+|++||||||.|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~N 295 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDN 295 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCCchHHHhhhHHH----------------------HHH-HHh--HHHhH
Q 017092 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEEEKRREEEE----------------------AEA-QLD--MQLAQ 231 (377)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~~~p~~~~~e~~~~~~e----------------------~~~-~~~--~~~~~ 231 (377)
|++||++|++||.||..|+++|+.+|..+++.+.........+. ... ... .....
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSELMS 375 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCccccccc
Confidence 99999999999999999999999999997654432211000000 000 000 00000
Q ss_pred HHHHHHHhhhhhhhhhhhhhhh-----------------------HH--------H----HHHHhhhccCCCHHHHHHHH
Q 017092 232 DAAHAKMARDTSNELYEVDVHL-----------------------DE--------L----REMLVQKCRKTSTEEKRKLG 276 (377)
Q Consensus 232 ~~~~~~~~~~~~~e~~~~~~~l-----------------------~~--------l----~~~~~~~~r~mt~eEK~~L~ 276 (377)
..........+...+..+..++ .. . ........+.||..++..|.
T Consensus 376 ~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l~ 455 (640)
T KOG1474|consen 376 EEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKLK 455 (640)
T ss_pred HHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccccccccccccccccccch
Confidence 0000000000000000000000 00 0 00111235789999999999
Q ss_pred HHhcCC-ChhhHHHHHHHH--HhhCCCCCCCCCeeEEeCcCCC-------------HHHHHHHHHHHHHH
Q 017092 277 AALTRL-SPEDLGKALEIV--AQSNTGFQATAEEVELDMDAQS-------------ESTLWRLKFFVKDA 330 (377)
Q Consensus 277 ~~i~~L-~~e~l~~vi~II--~~~~P~~~~~~~eiEiDid~L~-------------~~TL~~L~~yV~~~ 330 (377)
..+..| ++..+..+++|+ ....+.+...++++++|++.++ ..|+|++..++...
T Consensus 456 ~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~ 525 (640)
T KOG1474|consen 456 ELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIRETLKLSTER 525 (640)
T ss_pred hhccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhhccccchhhH
Confidence 999994 999999999999 5577778888999999999999 88888888776554
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=4.2e-29 Score=211.26 Aligned_cols=106 Identities=31% Similarity=0.499 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
.++.++|..|+..|++|+.++||..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3688899999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhCCCC
Q 017092 182 DE-RSDVHVMAKTLLAKFEEKWLQLLPKV 209 (377)
Q Consensus 182 ~~-~s~v~~~A~~L~~~fe~~~~~~~p~~ 209 (377)
++ +|.||.+|..|+..|++++..+.+.+
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999986544
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=9.3e-29 Score=206.11 Aligned_cols=105 Identities=33% Similarity=0.576 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhc
Q 017092 102 EELIRQFGTILRNITQH-KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~-~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (377)
.+|.+.|..+++.|+++ +.||+|..||++...++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999 99999999999987779999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhC
Q 017092 181 NDERSDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
|+++|.++.+|..|++.|++.+..++
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.1e-28 Score=205.38 Aligned_cols=101 Identities=41% Similarity=0.635 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCC
Q 017092 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (377)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (377)
+.-.+..|+..|++|+.|+||..|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||++
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKP 85 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 33355788999999999999999999987779999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 017092 184 RSDVHVMAKTLLAKFEEKWLQ 204 (377)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~ 204 (377)
+|.++.+|..|++.|++++.+
T Consensus 86 ~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 86 GDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999865
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.9e-28 Score=200.33 Aligned_cols=95 Identities=31% Similarity=0.547 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCC
Q 017092 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (377)
Q Consensus 105 ~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (377)
++.|..|++.|++++.++||..||++.. +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4689999999999999999999999877 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 017092 185 SDVHVMAKTLLAKFEEK 201 (377)
Q Consensus 185 s~v~~~A~~L~~~fe~~ 201 (377)
|.|+.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=8.6e-28 Score=196.64 Aligned_cols=96 Identities=40% Similarity=0.768 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCC
Q 017092 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (377)
Q Consensus 105 ~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (377)
+..|..|+..|++++.+++|..||++.. +|+||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4689999999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 017092 185 SDVHVMAKTLLAKFEEKW 202 (377)
Q Consensus 185 s~v~~~A~~L~~~fe~~~ 202 (377)
|.++.+|..|++.|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 7
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1e-27 Score=196.77 Aligned_cols=99 Identities=53% Similarity=0.994 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCC
Q 017092 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (377)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (377)
+++.|..||+.|++++.+++|..||++...++|+||++|++||||+||++||++|.|.|+.+|.+||++||.||+.||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999886679999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 017092 184 RSDVHVMAKTLLAKFEEKW 202 (377)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~ 202 (377)
+|.++.+|..|.+.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.2e-27 Score=201.61 Aligned_cols=103 Identities=35% Similarity=0.609 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhc
Q 017092 101 MEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (377)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (377)
+...+..|..|+..|+.++.+++|..||+... +||||++|++||||+||++||.+|.|.|+.+|.+||+|||.||++|
T Consensus 10 ~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLY 87 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999877 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 017092 181 NDERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
|+++|.++.+|..|+++|+.++.++
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876
No 9
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.6e-27 Score=196.17 Aligned_cols=101 Identities=32% Similarity=0.475 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
.+.+.|..|+..|++|+.++||..||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||..||+
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 467799999999999999999999999876 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 017092 183 ERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
++|.++.+|..|++.|...+..+
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999998887643
No 10
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6e-27 Score=195.63 Aligned_cols=103 Identities=36% Similarity=0.634 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhc---CCCCCHHHHHHHHHhhhhhhhh
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA---KEYKNVREICTDVRLVFKNAMK 179 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~---~~Y~s~~ef~~Dv~Lif~Na~~ 179 (377)
..++.|..|+..|++|+.++||..||++ . +|+||++|++||||+||++||++ |.|.++.+|.+||+|||+||+.
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~ 80 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYK 80 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4577999999999999999999999999 4 99999999999999999999999 5999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 017092 180 YNDERSDVHVMAKTLLAKFEEKWLQLLPK 208 (377)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~~~p~ 208 (377)
||+++|.++.+|..|++.|+++|..++|.
T Consensus 81 yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 81 FNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999873
No 11
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4e-27 Score=193.15 Aligned_cols=97 Identities=28% Similarity=0.499 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
.++...|..++..|. |+.||||..||++.. +||||.+|++||||+||++||++|.|.++++|.+||+|||.||+.||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356667888999998 999999999999977 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 017092 182 DERSDVHVMAKTLLAKFEEK 201 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~ 201 (377)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999988753
No 12
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=5.4e-27 Score=193.52 Aligned_cols=98 Identities=44% Similarity=0.876 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 105 IRQFGTILRNITQH---KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 105 ~~~~~~il~~l~~~---~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
++.|..|+..|+++ +.+++|..||++...++|+||++|++||||+||++||.+|.|.|+.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 56899999999999 899999999999877799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 017092 182 DERSDVHVMAKTLLAKFEEKW 202 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~ 202 (377)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 13
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=9.8e-27 Score=194.95 Aligned_cols=102 Identities=28% Similarity=0.517 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhc
Q 017092 102 EELIRQFGTILRNITQH-KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~-~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (377)
.++...|..|+..|+++ +.|++|..||++.. +||||++|++||||+||++||.+|.|.|+.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999 89999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHhh
Q 017092 181 NDERS-DVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 181 N~~~s-~v~~~A~~L~~~fe~~~~~~ 205 (377)
|+++| .++.+|..|++.|+..+..+
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99766 67899999999999998876
No 14
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=9.8e-27 Score=192.42 Aligned_cols=99 Identities=31% Similarity=0.533 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
.+.+.|..|++.|++++.+++|..||++...++|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||+
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56789999999999999999999999988777999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 017092 183 ERSDVHVMAKTLLAKFEEK 201 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~ 201 (377)
++|.++.+|..|++.|++.
T Consensus 84 ~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 84 PEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 15
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.6e-27 Score=192.70 Aligned_cols=98 Identities=36% Similarity=0.790 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 105 IRQFGTILRNITQH---KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 105 ~~~~~~il~~l~~~---~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
++.|..||..|+++ +.++||+.||++...++||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46899999999994 579999999999855699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 017092 182 DERSDVHVMAKTLLAKFEEKW 202 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~ 202 (377)
+++|.++.+|..|++.|+.+|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 16
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.7e-26 Score=189.66 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCC
Q 017092 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (377)
Q Consensus 105 ~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (377)
++.|..|+..|++++.|++|..++ .. +||||++|++||||+||++||.+|.|.|+.+|.+||+|||.||++||+++
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~p--~~--~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~ 79 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISKP--YY--IRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD 79 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCCC--CC--CCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 456999999999999999997743 33 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCC
Q 017092 185 SDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 185 s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
.++.+|..|++.|+++|..++.
T Consensus 80 -~~~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 80 -DFGQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998763
No 17
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.3e-26 Score=190.93 Aligned_cols=99 Identities=36% Similarity=0.649 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCC
Q 017092 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (377)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (377)
++.+|..|++.|++|+.+++|..||++.. +|+||++|++||||+||++||.+|.|.|+.+|..||+|||.||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 017092 184 RSDVHVMAKTLLAKFEEKWLQ 204 (377)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~ 204 (377)
+|.++.+|..|+..|++.+.+
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.3e-26 Score=191.44 Aligned_cols=100 Identities=30% Similarity=0.448 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Q 017092 103 ELIRQFGTILRNITQHKW------AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~------a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (377)
+|.++|..|++.|.++.. ++||..||+... +||||++|++||||+||++||.+|.|.++.+|..||.|||.|
T Consensus 1 ~l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~N 78 (107)
T cd05516 1 ELTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQN 78 (107)
T ss_pred CHHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 367789999999998865 899999999887 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHh
Q 017092 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQ 204 (377)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~ 204 (377)
|+.||++||.+|.+|..|++.|++.+.+
T Consensus 79 a~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 79 AQTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998865
No 19
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.93 E-value=4.4e-26 Score=191.06 Aligned_cols=104 Identities=27% Similarity=0.467 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
++...|..|+..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 566688999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred C----CCHHHHHHHHHHHHHHHHHHhhCCC
Q 017092 183 E----RSDVHVMAKTLLAKFEEKWLQLLPK 208 (377)
Q Consensus 183 ~----~s~v~~~A~~L~~~fe~~~~~~~p~ 208 (377)
+ ||.++.+|..|++.|..++...+|.
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9 4799999999999999999988774
No 20
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.1e-26 Score=185.42 Aligned_cols=92 Identities=30% Similarity=0.464 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCC
Q 017092 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (377)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (377)
+...|..|++.|+.++.+++|..||+... +||||++|++||||+||++||+++.|.|+.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45688999999999999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 017092 184 RSDVHVMAKTLLAK 197 (377)
Q Consensus 184 ~s~v~~~A~~L~~~ 197 (377)
+|.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998654
No 21
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.5e-25 Score=188.02 Aligned_cols=99 Identities=30% Similarity=0.539 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCH
Q 017092 107 QFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSD 186 (377)
Q Consensus 107 ~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~ 186 (377)
.+..|+.+|++++.+++|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||+++|.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46789999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCC
Q 017092 187 VHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 187 v~~~A~~L~~~fe~~~~~~~p 207 (377)
++.+|..|...|+..+..+..
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREE 102 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999988743
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.9e-25 Score=182.98 Aligned_cols=91 Identities=27% Similarity=0.484 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCC
Q 017092 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (377)
Q Consensus 105 ~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (377)
...|..++++|+.++.+++|..||+... +||||++|++||||+||++||.+|.|.|+++|..||+|||.||+.||+++
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 3 EVLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3468899999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 017092 185 SDVHVMAKTLLAK 197 (377)
Q Consensus 185 s~v~~~A~~L~~~ 197 (377)
|.+|.+|..|++.
T Consensus 81 s~~~~~A~~l~~~ 93 (98)
T cd05512 81 TIFYRAAVRLRDQ 93 (98)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3e-25 Score=183.55 Aligned_cols=96 Identities=29% Similarity=0.450 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHH------cCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhh
Q 017092 105 IRQFGTILRNIT------QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (377)
Q Consensus 105 ~~~~~~il~~l~------~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 178 (377)
.+.|..|++.|+ .++.+++|..||+... +|+||++|++||||+||++||++|.|.|+.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 467888888888 4457999999999888 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q 017092 179 KYNDERSDVHVMAKTLLAKFEEKW 202 (377)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~ 202 (377)
.||+++|.++.+|..|++.|+.++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 24
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=8.6e-25 Score=183.65 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhh
Q 017092 104 LIRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (377)
Q Consensus 104 l~~~~~~il~~l~~~------~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (377)
..+.|..|++.|+++ +.+.+|..+|+... +||||++|++||||+||++||.++.|.|+.+|.+||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999964 45678999998877 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 178 MKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
+.||+++|.+|.+|..|++.|++.+.++.+
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999887753
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1e-24 Score=180.94 Aligned_cols=97 Identities=27% Similarity=0.460 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhh
Q 017092 105 IRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (377)
Q Consensus 105 ~~~~~~il~~l~~~------~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 178 (377)
++.|..|+..|..+ +.+++|..||+... +||||++|++||||+||++||.++.|.++.+|.+||.|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 34566666666654 57899999999887 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHH
Q 017092 179 KYNDERSDVHVMAKTLLAKFEEKWL 203 (377)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~~ 203 (377)
.||+++|.+|.+|..|++.|.+...
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987653
No 26
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=2.1e-24 Score=178.36 Aligned_cols=82 Identities=28% Similarity=0.506 Sum_probs=78.8
Q ss_pred CCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHHH
Q 017092 118 HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAK 197 (377)
Q Consensus 118 ~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~ 197 (377)
++.++||..||+... +||||++|++||||+||+.||.+|.|.++.+|.+||+|||.||+.||+++|.+|.+|..|++.
T Consensus 21 ~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~ 98 (103)
T cd05520 21 QLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKL 98 (103)
T ss_pred CCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 358999999999887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 017092 198 FEEK 201 (377)
Q Consensus 198 fe~~ 201 (377)
|+++
T Consensus 99 f~~~ 102 (103)
T cd05520 99 MQAK 102 (103)
T ss_pred HHHh
Confidence 9874
No 27
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.8e-24 Score=177.70 Aligned_cols=96 Identities=31% Similarity=0.397 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhh
Q 017092 104 LIRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (377)
Q Consensus 104 l~~~~~~il~~l~~~------~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (377)
|...|..|++.|..+ ..++||..+|+... +||||++|++||||+||++||.+|.|.|+.+|.+||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 455677777777765 35799999999988 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH
Q 017092 178 MKYNDERSDVHVMAKTLLAKFEEK 201 (377)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~ 201 (377)
+.||+++|.++.+|..|++.|+..
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.9e-24 Score=182.38 Aligned_cols=99 Identities=28% Similarity=0.407 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHH---cCCCCCCCCCcCCcc-cCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhh
Q 017092 103 ELIRQFGTILRNIT---QHKWAWPFMQPVDVK-GLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (377)
Q Consensus 103 ~l~~~~~~il~~l~---~~~~a~~F~~pVd~~-~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 178 (377)
++...|..++..|+ +++.+++|..||+.. . +|+||++|++||||+||++||.+|.|+++.+|..||+|||.||+
T Consensus 24 ~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~--~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 24 EERERLISGLDKLLLSLQLEIAEYFEYPVDLRAW--YPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAE 101 (128)
T ss_pred HHHHHHHHHHHHHHhcccCcccccccCCCCcccc--CCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45667788888888 899999999999998 6 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHH
Q 017092 179 KYNDERSDVHVMAKTLLAKFEEKWL 203 (377)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~~ 203 (377)
.||+++|.++.+|..|++.|...+.
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 29
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=3.1e-24 Score=177.39 Aligned_cols=100 Identities=31% Similarity=0.438 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhh
Q 017092 99 KRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (377)
Q Consensus 99 ~~~~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 178 (377)
+++..++..+....+ ...+..+.+|..+|+... +||||++|++||||+||+.||.+|.|.|+.+|.+||+|||.||+
T Consensus 3 ~~~~~l~~~v~~~~d-~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 79 (103)
T cd05518 3 KRMLALFLYVLEYRE-GSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNAR 79 (103)
T ss_pred HHHHHHHHHHHHhhc-cCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Confidence 344455554444422 345678999999999988 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q 017092 179 KYNDERSDVHVMAKTLLAKFEEK 201 (377)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~ 201 (377)
.||+++|.+|.+|..|+++|+++
T Consensus 80 ~yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 80 HYNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999864
No 30
>smart00297 BROMO bromo domain.
Probab=99.91 E-value=7.1e-24 Score=175.47 Aligned_cols=101 Identities=43% Similarity=0.728 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
..+...|..|+..+.+++.+++|..||+... +|+||.+|++||||++|++||++|.|.|+.+|.+||++||.||+.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3567789999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 017092 182 DERSDVHVMAKTLLAKFEEKWLQ 204 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~ 204 (377)
+++|.++.+|..|...|+..|.+
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 31
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=4.6e-24 Score=176.36 Aligned_cols=93 Identities=25% Similarity=0.390 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhh
Q 017092 106 RQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (377)
Q Consensus 106 ~~~~~il~~l~~~------~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (377)
+.|..|+..|+.+ +.+++|..+|+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677777777765 46799999999988 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 017092 180 YNDERSDVHVMAKTLLAKFEE 200 (377)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~ 200 (377)
||+++|.++.+|..|++.|+.
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999975
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.1e-22 Score=168.43 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=79.0
Q ss_pred CCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHHH
Q 017092 118 HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAK 197 (377)
Q Consensus 118 ~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~ 197 (377)
++.+++|..+|+... +|+||++|++||||+||++||.+|.|.++.+|..||.|||.||+.||+++|.++.+|..|++.
T Consensus 22 ~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~ 99 (104)
T cd05522 22 RLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKE 99 (104)
T ss_pred CcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 578999999999887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 017092 198 FEEK 201 (377)
Q Consensus 198 fe~~ 201 (377)
|+..
T Consensus 100 f~~l 103 (104)
T cd05522 100 ARLL 103 (104)
T ss_pred HHHh
Confidence 9864
No 33
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2e-22 Score=167.27 Aligned_cols=96 Identities=25% Similarity=0.318 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhh
Q 017092 104 LIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (377)
Q Consensus 104 l~~~~~~il~~l~~~~------~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (377)
|.++|..+++.|+... .+.+|..+|+... +||||++|++||||+||++||.+ |.++.+|.+||.|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 4556777788777654 5679999888877 99999999999999999999998 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHH
Q 017092 178 MKYNDERSDVHVMAKTLLAKFEEKWL 203 (377)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~ 203 (377)
+.||+++|.+|.+|..|+++|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998753
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.88 E-value=1.5e-22 Score=160.30 Aligned_cols=84 Identities=43% Similarity=0.726 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHH
Q 017092 108 FGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187 (377)
Q Consensus 108 ~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v 187 (377)
|..|+..|++++.+++|..||+... +|+|+.+|++||||++|+.||++|.|.++.+|..||++||.||+.||+++|.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 8899999999999999999998877 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 017092 188 HVMAKT 193 (377)
Q Consensus 188 ~~~A~~ 193 (377)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.87 E-value=3e-22 Score=161.49 Aligned_cols=95 Identities=42% Similarity=0.663 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCC
Q 017092 106 RQFGTILRNITQH--KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (377)
Q Consensus 106 ~~~~~il~~l~~~--~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (377)
..|..|++.+..+ +.+++|..||++.. +|+||.+|++||||++|+.||.+|.|.++.+|.+||++||.||+.||++
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999 99999999999977 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 017092 184 RSDVHVMAKTLLAKFEEKW 202 (377)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~ 202 (377)
+|.++.+|..|...|++.|
T Consensus 81 ~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 81 GSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998763
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=1.1e-21 Score=163.33 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=86.5
Q ss_pred HHHHHHHHHc-CCCCCCCCCcCCcc---cCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCC
Q 017092 108 FGTILRNITQ-HKWAWPFMQPVDVK---GLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (377)
Q Consensus 108 ~~~il~~l~~-~~~a~~F~~pVd~~---~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (377)
+..++..+.+ .+.++||..||... ..++|+|+.+|++||||+||++||++|.|+++++|.+||.|||+||..||++
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4566777777 57789999999733 3349999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 017092 184 RSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
+|.++.+|..|.......+.++
T Consensus 85 ~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 85 DSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877766654
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.78 E-value=7.3e-19 Score=146.09 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhh
Q 017092 104 LIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (377)
Q Consensus 104 l~~~~~~il~~l~~~~------~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (377)
+...+.+|+..+++|. .+.+|.+.++ . .|+||.+|+.||||++|++||.+|.|.++++|..||.+||.||
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~--~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NA 79 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--L--AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERA 79 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--c--ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHH
Confidence 3446677788888774 6899999887 2 5788999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017092 178 MKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
++||.+||.+|.+|..|+.+|.....++
T Consensus 80 r~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 80 RRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877655
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.75 E-value=1.3e-18 Score=195.75 Aligned_cols=98 Identities=38% Similarity=0.748 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHH
Q 017092 108 FGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187 (377)
Q Consensus 108 ~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v 187 (377)
|..|+..|+.|..||||+.||++.. +||||+||++||||+||+.|+..|.|.++.+|..||.|||.||.+||.+ |.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999999 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhhCCC
Q 017092 188 HVMAKTLLAKFEEKWLQLLPK 208 (377)
Q Consensus 188 ~~~A~~L~~~fe~~~~~~~p~ 208 (377)
+.++..|..+|+..|...+|.
T Consensus 1383 ~~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred hhhcchHHHHHHHHHHhhcCC
Confidence 999999999999999887763
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.72 E-value=9.3e-18 Score=168.20 Aligned_cols=90 Identities=31% Similarity=0.446 Sum_probs=85.5
Q ss_pred CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 017092 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198 (377)
Q Consensus 119 ~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~f 198 (377)
..+++|+.+|+... +|+||.||+.||||++|+++|..+.|.++++|..|+.|||.||.+||+++|.||.+|..|++.|
T Consensus 164 ~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~ 241 (371)
T COG5076 164 FLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF 241 (371)
T ss_pred ccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence 57899999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCc
Q 017092 199 EEKWLQLLPKVT 210 (377)
Q Consensus 199 e~~~~~~~p~~~ 210 (377)
...+..+.+...
T Consensus 242 ~~~i~~~~~~~~ 253 (371)
T COG5076 242 LKLIEEIPEEML 253 (371)
T ss_pred HHHHHhccccch
Confidence 999998866543
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.66 E-value=8.9e-17 Score=168.83 Aligned_cols=142 Identities=28% Similarity=0.460 Sum_probs=120.8
Q ss_pred CCCCCCcccCcccCCC---CCccchhhhHHhHHhHHh-hHHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchh
Q 017092 64 NSKGSSTLKDKEKERH---VPSIRKQQQEASRREKAA-EKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYY 139 (377)
Q Consensus 64 ~~~g~s~~~~~~r~r~---~~~~k~~~~~~~~~e~~~-~~~~~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~ 139 (377)
+++|.++++++.+.++ +|+.+...+.....+... ...+..+...+..++.+|..|..+|||.+||+..+ +||||
T Consensus 563 v~~gl~~~~~~~~~~~~~~iPg~~E~~~~~~~~~~r~~~~~~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy 640 (720)
T KOG1472|consen 563 VYPGLECFKDGVPQIPPRKIPGFRESGWKPEKESYRQEYKKPGKLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDYY 640 (720)
T ss_pred cccccccccccccccCcccCCCchhhccCcchHHHHhhhcccchhhHHHHhHHhhhhcCCccCCccCcccccc--CCcHH
Confidence 6789999998866554 566655555444333331 13344567788999999999999999999999998 99999
Q ss_pred hhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 140 EVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 140 ~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
.+|++||||.||+.+|..+.|..+..|++|+..||.||+.||+.++.+|+.|..|...|..++...+.
T Consensus 641 ~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 641 DVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred HHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999988876643
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.40 E-value=1.9e-13 Score=114.99 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcC-------CCCCHHHHHHHHHhhhh
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAK-------EYKNVREICTDVRLVFK 175 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~-------~Y~s~~ef~~Dv~Lif~ 175 (377)
+.+..|..++..++.++.+|||..||++...++||||++|++||||+||+.+|.++ .|..-..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 34567888888888899999999999996666999999999999999999999997 35545566677777777
Q ss_pred hhhhcCC
Q 017092 176 NAMKYND 182 (377)
Q Consensus 176 Na~~YN~ 182 (377)
||..+|.
T Consensus 83 ~~~~~~~ 89 (114)
T cd05494 83 RRSPSNI 89 (114)
T ss_pred ccCcccc
Confidence 7777665
No 42
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.13 E-value=3.8e-11 Score=100.48 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=40.7
Q ss_pred ccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCC
Q 017092 142 IDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERS 185 (377)
Q Consensus 142 Ik~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s 185 (377)
+-.||||+||++||.+|.|.++.+|.+||+|||.||+.||+++.
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34699999999999999999999999999999999999998643
No 43
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.08 E-value=1.4e-10 Score=127.29 Aligned_cols=101 Identities=27% Similarity=0.418 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCC
Q 017092 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (377)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (377)
..+.+..+++.+...+....|..|||..+ +|||.++|++||||.||+.++++|.|+++++|.+|+.+|..||+.||..
T Consensus 566 ~~kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~ 643 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAK 643 (1051)
T ss_pred HHHHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhcc
Confidence 34456688888888999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhC
Q 017092 184 RSDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
++.+|..|..+++.....+...-
T Consensus 644 dtv~~r~av~~~e~~~~~~~~ar 666 (1051)
T KOG0955|consen 644 DTVYYRAAVRLRELIKKDFRNAR 666 (1051)
T ss_pred CeehHhhhHHHHhhhhhHHHhcc
Confidence 99999999999999888776653
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.02 E-value=2.4e-10 Score=125.27 Aligned_cols=96 Identities=29% Similarity=0.527 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCH
Q 017092 107 QFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSD 186 (377)
Q Consensus 107 ~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~ 186 (377)
.+-.|+.+++.-+.+|+|.+||+... +|+||.+|++||||.||.+++....|.+..+|.+||++|+.||..||+..+.
T Consensus 1386 ~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~ 1463 (1563)
T KOG0008|consen 1386 ILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESA 1463 (1563)
T ss_pred hhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccc
Confidence 35577888888899999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 017092 187 VHVMAKTLLAKFEEKWLQ 204 (377)
Q Consensus 187 v~~~A~~L~~~fe~~~~~ 204 (377)
+..-|+.+-++....+.+
T Consensus 1464 y~~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1464 YTKKARKIGEVGLANLLE 1481 (1563)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 999988776666555443
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.93 E-value=1.3e-09 Score=117.35 Aligned_cols=100 Identities=30% Similarity=0.431 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhh
Q 017092 106 RQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (377)
Q Consensus 106 ~~~~~il~~l~~~------~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (377)
+.|..|+.....+ ..+..|...++... +||||.+|+.||++..|.++|.++.|.+..+...||.++|.||+.
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 4577788777744 46789999999888 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 180 YNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
||..||.||..|..|+.+|......+..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999998888754
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.84 E-value=4.3e-09 Score=109.86 Aligned_cols=97 Identities=28% Similarity=0.324 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhh
Q 017092 104 LIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (377)
Q Consensus 104 l~~~~~~il~~l~~~~------~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (377)
+..++..|+..+..+. ....|.+.++... .|+||.+|..||.|..|+.|+..+.|.+.+.|..|+.||+.||
T Consensus 53 ~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena 130 (629)
T KOG1827|consen 53 LIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENA 130 (629)
T ss_pred HHHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 4446666666666653 5788999999988 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Q 017092 178 MKYNDERSDVHVMAKTLLAKFEEKW 202 (377)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~ 202 (377)
+.||.++|.++++|..|...|...-
T Consensus 131 ~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 131 RLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHhcCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999999998754
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.83 E-value=4.6e-09 Score=115.49 Aligned_cols=100 Identities=28% Similarity=0.467 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
-+...+..|++++...+.+.+|..||+... ++|||.||+.||||.|+++.+....|.+-++|..|+.||++|..+||+
T Consensus 1261 ~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng 1338 (1563)
T KOG0008|consen 1261 SLSSILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNG 1338 (1563)
T ss_pred ecccchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcC
Confidence 345567899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 017092 183 ERSDVHVMAKTLLAKFEEKWLQ 204 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~ 204 (377)
+-+.+...+..+....-..|..
T Consensus 1339 ~~~~~t~~~q~mls~~~~~~~e 1360 (1563)
T KOG0008|consen 1339 PLASLTRQQQSMLSLCFEKLKE 1360 (1563)
T ss_pred chHHHHHHHHHHHHHHHHhhch
Confidence 9999999998887777666654
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.82 E-value=2.6e-09 Score=113.11 Aligned_cols=82 Identities=27% Similarity=0.479 Sum_probs=72.8
Q ss_pred cCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHH
Q 017092 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (377)
Q Consensus 117 ~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~ 196 (377)
.+..+++|..||+... .|+||.||+-||||+|+.+++..+.|.+.++|+.|+.+||.||..||.+.+.....-..+..
T Consensus 300 ~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~ 377 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMN 377 (720)
T ss_pred ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhc
Confidence 3789999999999998 99999999999999999999999999999999999999999999999877766665555555
Q ss_pred HHHH
Q 017092 197 KFEE 200 (377)
Q Consensus 197 ~fe~ 200 (377)
-+.-
T Consensus 378 ~~s~ 381 (720)
T KOG1472|consen 378 SKSL 381 (720)
T ss_pred cCcH
Confidence 5543
No 49
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.63 E-value=7.9e-09 Score=110.46 Aligned_cols=91 Identities=38% Similarity=0.676 Sum_probs=84.9
Q ss_pred HHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHH
Q 017092 115 ITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTL 194 (377)
Q Consensus 115 l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L 194 (377)
...|.++|+|..||+...+++|+||.+|++|||++||..++++..|.+..+..+|+.-+|.||..||..+.+|+.++..+
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~ 83 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSL 83 (640)
T ss_pred cccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 017092 195 LAKFEEKWLQL 205 (377)
Q Consensus 195 ~~~fe~~~~~~ 205 (377)
...|.......
T Consensus 84 ~~~~~~~~~~~ 94 (640)
T KOG1474|consen 84 EKLFPKKLRSM 94 (640)
T ss_pred hhhcccccccc
Confidence 99987665544
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.16 E-value=3.9e-07 Score=89.67 Aligned_cols=89 Identities=26% Similarity=0.257 Sum_probs=77.7
Q ss_pred HHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHH
Q 017092 110 TILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHV 189 (377)
Q Consensus 110 ~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~ 189 (377)
.++..+-+...-..|.-||.... .|+|.+||+.|||+.|++.+++.+.|.+..+|..|.+++..||..||..++.++.
T Consensus 26 hhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~ 103 (418)
T KOG1828|consen 26 HHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIV 103 (418)
T ss_pred HHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccc
Confidence 44555555556667777888887 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 017092 190 MAKTLLAKFEE 200 (377)
Q Consensus 190 ~A~~L~~~fe~ 200 (377)
.|+.|..+-..
T Consensus 104 aaKrL~~v~~~ 114 (418)
T KOG1828|consen 104 AAKRLCPVRLG 114 (418)
T ss_pred cccccchhhcc
Confidence 99988766543
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.01 E-value=3.2e-06 Score=83.32 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=73.2
Q ss_pred HHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHH
Q 017092 112 LRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMA 191 (377)
Q Consensus 112 l~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A 191 (377)
.+++........|.-||-... +|.|.-+|++|+|++|++.+..++.|.| -+|..|+.||+.||++||.+...+|..|
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyela 293 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELA 293 (418)
T ss_pred HHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHH
Confidence 345555566778888888777 9999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHH
Q 017092 192 KTLLA 196 (377)
Q Consensus 192 ~~L~~ 196 (377)
..+..
T Consensus 294 nk~lh 298 (418)
T KOG1828|consen 294 NKQLH 298 (418)
T ss_pred Hhhhh
Confidence 88765
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.17 E-value=0.00012 Score=73.85 Aligned_cols=88 Identities=33% Similarity=0.512 Sum_probs=80.3
Q ss_pred HHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHH
Q 017092 114 NITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKT 193 (377)
Q Consensus 114 ~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~ 193 (377)
....+..+|+|..++.... .|+|++.|..+|+++|.+.++..+.|.....|..|..++|+||..||+....++..+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (371)
T COG5076 274 NSQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANV 351 (371)
T ss_pred ccccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccc
Confidence 3355667899999999988 99999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 017092 194 LLAKFEEKWL 203 (377)
Q Consensus 194 L~~~fe~~~~ 203 (377)
+...+.....
T Consensus 352 ~~~~~~~~~~ 361 (371)
T COG5076 352 LEDFVIKKTR 361 (371)
T ss_pred hhhhHhhhhh
Confidence 8888776554
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.95 E-value=0.0011 Score=57.03 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=57.7
Q ss_pred CCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCCchH
Q 017092 145 PMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (377)
Q Consensus 145 PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~p~~~~~ 212 (377)
|.||.-|++||+.|.|+++.+|.+||-.|+.-++.=.+....+-+....+..+|-..+..+++++...
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~ 126 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSE 126 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccccc
Confidence 89999999999999999999999999999998887666555555556667788999999999887543
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.74 E-value=0.21 Score=54.35 Aligned_cols=60 Identities=18% Similarity=0.379 Sum_probs=52.5
Q ss_pred ccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 017092 142 IDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201 (377)
Q Consensus 142 Ik~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~fe~~ 201 (377)
-.-|..|..|..+|++..|++.+.|..||-.|..||.+|.+.+-.+...+..|...|..-
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 456789999999999999999999999999999999999998887777777777776543
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=0.42 Score=53.90 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=55.4
Q ss_pred CCCCCCcCCcc---cCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHH--HHHhhhhhhhhcCCCC
Q 017092 121 AWPFMQPVDVK---GLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICT--DVRLVFKNAMKYNDER 184 (377)
Q Consensus 121 a~~F~~pVd~~---~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~--Dv~Lif~Na~~YN~~~ 184 (377)
+..|..|++.. .+.+++|..+|+.|||+...-.++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 56677777642 2225699999999999999999999999999999999 9999999999999765
No 56
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=72.63 E-value=2 Score=47.26 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=52.5
Q ss_pred CCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCC--------------C----------CHHH------HHHHHHhhh
Q 017092 125 MQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEY--------------K----------NVRE------ICTDVRLVF 174 (377)
Q Consensus 125 ~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y--------------~----------s~~e------f~~Dv~Lif 174 (377)
.-++|... .|-|..+...|.+|+|++..|.+..| . ++.+ ..+-+.+|-
T Consensus 87 v~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~ 164 (1113)
T KOG0644|consen 87 VPMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIG 164 (1113)
T ss_pred ccCcCCCC--CcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccc
Confidence 44666666 88999999999999999999999888 2 3333 667788999
Q ss_pred hhhhhcCCCCCHHHHHHHH
Q 017092 175 KNAMKYNDERSDVHVMAKT 193 (377)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~ 193 (377)
.||+.++.|++ +++.++.
T Consensus 165 ~at~~~akPgt-mvqkmk~ 182 (1113)
T KOG0644|consen 165 CATFSIAKPGT-MVQKMKN 182 (1113)
T ss_pred cceeeecCcHH-HHHHHHH
Confidence 99999999999 5544443
No 57
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=71.01 E-value=0.57 Score=50.03 Aligned_cols=76 Identities=5% Similarity=-0.128 Sum_probs=69.0
Q ss_pred CCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 017092 121 AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198 (377)
Q Consensus 121 a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~f 198 (377)
...|+.-++... +|+||.+++-||-++.+.+++..+.|.....|..|+.+.|-|+..|+.....++..+..|.+.+
T Consensus 213 Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 213 IERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred ecccccCccccc--ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 466777777776 9999999999999999999999999999999999999999999999999999999998877654
No 58
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=58.01 E-value=32 Score=28.00 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=42.1
Q ss_pred cCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017092 157 AKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 157 ~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
...|.|..-|...+..|-.....++..+..+..+|..+...|++.|.+.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3458889999888888888887788778999999999999999999865
No 59
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=49.72 E-value=24 Score=28.23 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=51.4
Q ss_pred HhhhccCCCHHHHHHHHHHhc-CCChhhHHHHHHHHHhhCCCCCCCCC--eeEEeCcCC-CHHHHHHHHHHHHHHH
Q 017092 260 LVQKCRKTSTEEKRKLGAALT-RLSPEDLGKALEIVAQSNTGFQATAE--EVELDMDAQ-SESTLWRLKFFVKDAL 331 (377)
Q Consensus 260 ~~~~~r~mt~eEK~~L~~~i~-~L~~e~l~~vi~II~~~~P~~~~~~~--eiEiDid~L-~~~TL~~L~~yV~~~L 331 (377)
+-++...+|.+|-.+++...+ .+++++...|+.|++....++.+.++ .+-..|... +|.|...+......++
T Consensus 8 Vn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf~ 83 (85)
T PF11116_consen 8 VNQKLNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQFT 83 (85)
T ss_pred HHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 345668899999999999987 78999999999999987766553221 222334444 6777777776665543
No 60
>PHA01750 hypothetical protein
Probab=49.69 E-value=29 Score=26.32 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=25.8
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHh
Q 017092 24 AEVESFTLRVDDIFQKVDKLEERVNEIEQ 52 (377)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~~~~~i~~~~~ 52 (377)
+||..|+.++.++.-+++.++++|.++-.
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 79999999999999999999999977643
No 61
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=45.21 E-value=29 Score=26.34 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhhh
Q 017092 149 STIKKQMEAKEYKNVREICTDVRLVFK 175 (377)
Q Consensus 149 ~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 175 (377)
..|+..+.+|.|.|.+++++|.-.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998766553
No 62
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=40.66 E-value=1.1e+02 Score=23.25 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCeeEEeCcCCCHHHHHHHHHHHHHHHHhcCC
Q 017092 285 EDLGKALEIVAQSNTGFQATAEEVELDMDAQSESTLWRLKFFVKDALKSQGN 336 (377)
Q Consensus 285 e~l~~vi~II~~~~P~~~~~~~eiEiDid~L~~~TL~~L~~yV~~~L~~~g~ 336 (377)
++...+++.+.+.. -|-+||+.|+.+..+++-.|+....-..+.
T Consensus 10 ~D~~~i~~~l~~g~--------~Vivnl~~l~~~~~~Ri~Dfl~G~~~al~G 53 (73)
T PF04472_consen 10 EDAREIVDALREGK--------IVIVNLENLDDEEAQRILDFLSGAVYALDG 53 (73)
T ss_dssp GGHHHHHHHHHTT----------EEEE-TTS-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCC--------EEEEECCCCCHHHHHHHHHHHhchheeeCC
Confidence 56677777777654 388999999999999999999987765443
No 63
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=29.87 E-value=63 Score=25.31 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhh
Q 017092 149 STIKKQMEAKEYKNVREICTDVRLVF 174 (377)
Q Consensus 149 ~tIk~kL~~~~Y~s~~ef~~Dv~Lif 174 (377)
.-|...+.+|.|.|.+++++|.-.++
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRll 40 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLL 40 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45899999999999999998854444
No 64
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.28 E-value=1.1e+02 Score=18.50 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=8.0
Q ss_pred HHHHHHhhHHHHHHhHH
Q 017092 25 EVESFTLRVDDIFQKVD 41 (377)
Q Consensus 25 ~~~~~~~~~~~~~~k~~ 41 (377)
|++++|+.+.+|..+..
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455555544444433
No 65
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.92 E-value=1.6e+02 Score=23.78 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=24.5
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhh
Q 017092 24 AEVESFTLRVDDIFQKVDKLEERVNEIEQFYL 55 (377)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~~~~~i~~~~~~~~ 55 (377)
.+++.+-++||.|..+|..||+-+..++.++.
T Consensus 59 ~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 59 EELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888888888888887777554
No 66
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.72 E-value=66 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCC
Q 017092 314 AQSESTLWRLKFFVKDALKSQGNNN 338 (377)
Q Consensus 314 ~L~~~TL~~L~~yV~~~L~~~g~~~ 338 (377)
.-.+.-.|.|+.|+.+.++++|+..
T Consensus 48 ~~~~~~vW~lRdyL~~~i~~~G~eP 72 (89)
T PF10078_consen 48 QPFPEDVWILRDYLNDKIKEQGKEP 72 (89)
T ss_pred CCCcccchHHHHHHHHHHHHcCCCC
Confidence 3445567999999999999999755
No 67
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=20.26 E-value=1.9e+02 Score=29.24 Aligned_cols=45 Identities=13% Similarity=0.012 Sum_probs=30.7
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCeeEEeCcCCCHHHHHHHHH
Q 017092 281 RLSPEDLGKALEIVAQSNTGFQATAEEVELDMDAQSESTLWRLKF 325 (377)
Q Consensus 281 ~L~~e~l~~vi~II~~~~P~~~~~~~eiEiDid~L~~~TL~~L~~ 325 (377)
.|++++|.+++..|.+..|-.....=.+|.+.+.++.+-|..|+.
T Consensus 86 ~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~ 130 (394)
T PRK08898 86 LLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRA 130 (394)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999887644333445666667787765555444
No 68
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=20.17 E-value=1.3e+02 Score=21.06 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.7
Q ss_pred HHHHHHhhHHHHHHhHHHHHHH
Q 017092 25 EVESFTLRVDDIFQKVDKLEER 46 (377)
Q Consensus 25 ~~~~~~~~~~~~~~k~~~~~~~ 46 (377)
+-+.||+.+.+|+.+++.|..|
T Consensus 12 dreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 6688999999999999999865
No 69
>PF15384 DUF4610: Domain of unknown function (DUF4610)
Probab=20.07 E-value=2.1e+02 Score=26.40 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=37.3
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCcccC--cccCCCCCccch
Q 017092 24 AEVESFTLRVDDIFQKVDKLEERVNEIEQFYLNASKKQGSNSKGSSTLKD--KEKERHVPSIRK 85 (377)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~~~~~i~~~~~~~~s~s~~~~~~~~g~s~~~~--~~r~r~~~~~k~ 85 (377)
.-..+|++.+-.|.++|-.|++++..++..+ .|.+++....|..-..+ ..|+-+.+++++
T Consensus 111 Ea~~~Lq~L~f~lAe~v~~Le~~Laa~~~~a--~sp~Ks~~~~g~~flpd~d~qr~g~g~~vrr 172 (197)
T PF15384_consen 111 EAAPRLQALTFRLAERVCSLERRLAAVEETA--ASPRKSPQPAGPQFLPDPDPQRGGPGPGVRR 172 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccccc--cCCCCCCCcCCcccCCCcccccCCCCcceec
Confidence 4567889999999999999999997666532 34444444444442333 333434444444
Done!