Query 017092
Match_columns 377
No_of_seqs 326 out of 1474
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 100.0 1.5E-29 5.2E-34 216.4 11.8 110 98-207 17-129 (130)
2 3g0l_A Hwalp4, bromodomain adj 100.0 5.1E-29 1.7E-33 209.4 11.7 103 103-207 13-115 (117)
3 3d7c_A General control of amin 100.0 7.1E-29 2.4E-33 207.0 12.5 103 102-206 6-108 (112)
4 2oss_A HUNK1 protein, bromodom 100.0 1.3E-28 4.4E-33 209.9 12.2 105 103-207 21-125 (127)
5 3jvl_A Bromodomain-containing 100.0 6.7E-29 2.3E-33 209.5 9.6 107 101-207 7-116 (120)
6 3nxb_A CAT eye syndrome critic 100.0 1E-28 3.5E-33 207.2 10.4 101 102-204 15-115 (116)
7 3q2e_A Bromodomain and WD repe 100.0 1.6E-28 5.5E-33 208.1 10.5 105 103-209 10-115 (123)
8 1e6i_A Transcriptional activat 100.0 1.1E-28 3.9E-33 208.5 9.5 100 104-205 14-113 (121)
9 2i7k_A Bromodomain-containing 100.0 3.8E-28 1.3E-32 204.1 12.6 104 101-206 6-109 (117)
10 3p1f_A CREB-binding protein; s 100.0 2.8E-28 9.7E-33 205.4 11.8 105 102-206 10-115 (119)
11 3mb3_A PH-interacting protein; 100.0 7.2E-29 2.5E-33 213.5 8.2 105 102-208 20-125 (135)
12 2yyn_A Transcription intermedi 100.0 5.2E-28 1.8E-32 208.2 13.1 105 103-210 20-126 (135)
13 2dat_A Possible global transcr 100.0 3.8E-28 1.3E-32 205.8 12.0 103 103-207 13-121 (123)
14 2d9e_A Peregrin; four-helix bu 100.0 5.5E-28 1.9E-32 204.3 12.7 101 103-205 7-107 (121)
15 4alg_A Bromodomain-containing 100.0 3.9E-28 1.3E-32 213.4 12.2 107 103-209 32-138 (154)
16 3fkm_X Signaling protein; brom 99.9 4.1E-28 1.4E-32 215.8 11.6 105 102-206 20-124 (166)
17 2grc_A Probable global transcr 99.9 5.9E-28 2E-32 206.3 10.5 103 102-206 10-119 (129)
18 3mb4_A Protein polybromo-1; PB 99.9 1.5E-27 5.2E-32 202.4 11.9 102 103-206 15-122 (124)
19 3mqm_A Probable histone-lysine 99.9 1E-27 3.5E-32 203.9 10.5 106 101-208 7-118 (126)
20 3rcw_A Bromodomain-containing 99.9 1.6E-27 5.6E-32 205.0 11.3 103 101-205 11-113 (135)
21 3hme_A Bromodomain-containing 99.9 1.5E-27 5.1E-32 202.2 10.8 100 103-204 13-112 (123)
22 3iu5_A Protein polybromo-1; PB 99.9 1.7E-27 5.9E-32 199.7 11.0 103 103-207 5-113 (116)
23 3k2j_A Protein polybromo-1; PB 99.9 4.1E-27 1.4E-31 201.3 12.5 103 101-205 15-123 (130)
24 3ljw_A Protein polybromo-1; al 99.9 4.1E-27 1.4E-31 198.6 12.0 102 102-205 7-114 (120)
25 3tlp_A Protein polybromo-1; PB 99.9 1.9E-26 6.6E-31 201.8 10.3 104 107-212 28-138 (150)
26 3uv4_A Second bromodomain of h 99.9 2.2E-26 7.5E-31 203.0 10.7 103 103-207 29-132 (158)
27 2ri7_A Nucleosome-remodeling f 99.9 5.8E-26 2E-30 203.1 11.0 101 103-205 72-172 (174)
28 3dai_A ATPase family AAA domai 99.9 2.2E-25 7.4E-30 190.6 13.3 104 100-205 7-114 (130)
29 3o36_A Transcription intermedi 99.9 1.3E-25 4.3E-30 202.8 11.4 102 103-207 81-184 (184)
30 2dkw_A Hypothetical protein KI 99.9 3.8E-24 1.3E-28 183.1 12.7 100 100-206 9-112 (131)
31 3u5n_A E3 ubiquitin-protein li 99.9 2.7E-24 9.2E-29 197.7 12.0 104 103-209 81-204 (207)
32 3uv5_A Transcription initiatio 99.9 3.2E-24 1.1E-28 204.2 12.7 103 103-207 14-116 (265)
33 2ro1_A Transcription intermedi 99.9 1.4E-24 4.8E-29 196.9 8.3 99 104-209 77-180 (189)
34 3uv5_A Transcription initiatio 99.9 5.6E-24 1.9E-28 202.5 12.3 99 106-206 139-238 (265)
35 3aad_A Transcription initiatio 99.9 1E-23 3.4E-28 203.4 9.2 102 102-205 46-147 (292)
36 3aad_A Transcription initiatio 99.9 1E-22 3.6E-27 196.3 11.7 97 108-206 174-271 (292)
37 2r0y_A Chromatin structure-rem 99.9 1.3E-22 4.6E-27 197.0 9.3 87 117-205 177-263 (311)
38 2r10_A Chromatin structure-rem 99.9 2.4E-22 8.2E-27 199.1 9.7 87 117-205 227-313 (361)
39 2r10_A Chromatin structure-rem 99.8 1.1E-20 3.7E-25 187.2 7.6 98 104-205 79-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 2.1E-20 7.3E-25 181.5 8.2 94 108-205 33-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.8 2.4E-18 8.2E-23 148.5 12.3 98 103-206 7-110 (147)
42 2jns_A Bromodomain-containing 99.7 4.8E-18 1.6E-22 135.9 5.1 74 262-335 13-87 (90)
43 3lqh_A Histone-lysine N-methyl 99.6 6.7E-16 2.3E-20 138.7 8.7 98 102-212 74-171 (183)
44 2lm0_A AF4/FMR2 family member 95.7 0.016 5.3E-07 47.8 5.6 63 265-328 57-120 (125)
45 2yy0_A C-MYC-binding protein; 70.3 6.4 0.00022 27.5 4.5 42 11-52 6-47 (53)
46 1use_A VAsp, vasodilator-stimu 25.1 1.2E+02 0.0043 20.2 4.5 30 21-50 4-34 (45)
47 3p04_A Uncharacterized BCR; SE 24.4 1.7E+02 0.0059 22.2 5.9 41 285-333 16-56 (87)
48 3twe_A Alpha4H; unknown functi 22.5 1.2E+02 0.0039 17.6 3.4 22 26-47 3-24 (27)
49 1jcd_A Major outer membrane li 21.6 1.3E+02 0.0045 20.7 4.3 26 24-49 4-29 (52)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=1.5e-29 Score=216.43 Aligned_cols=110 Identities=41% Similarity=0.774 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHHHHHHcCC---CCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 017092 98 EKRMEELIRQFGTILRNITQHK---WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174 (377)
Q Consensus 98 ~~~~~~l~~~~~~il~~l~~~~---~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 174 (377)
..++.+.++.|..||..|+.++ .+|||..||++..+++||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 17 ~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 96 (130)
T 2ouo_A 17 SSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMF 96 (130)
T ss_dssp --CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455678889999999999987 4899999999987789999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
.||++||+++|.+|.+|..|+..|+..|..+..
T Consensus 97 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 97 SNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999998753
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.96 E-value=5.1e-29 Score=209.36 Aligned_cols=103 Identities=36% Similarity=0.679 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
..++.|..|+..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 467889999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 183 ERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
++|.++.+|..|++.|++.|.+++.
T Consensus 91 ~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 91 DDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998753
No 3
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.96 E-value=7.1e-29 Score=206.96 Aligned_cols=103 Identities=30% Similarity=0.477 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
..+...|..|+..|++|+.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 6 ~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 4788999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhC
Q 017092 182 DERSDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
+++|.++.+|..|++.|++.|.++.
T Consensus 84 ~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999998763
No 4
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=1.3e-28 Score=209.86 Aligned_cols=105 Identities=38% Similarity=0.644 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
++...|..|+..|++|+.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 21 ~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 100 (127)
T 2oss_A 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 100 (127)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45667888999999999999999999987566999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 183 ERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
++|.+|.+|..|++.|++.|.++..
T Consensus 101 ~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 101 PGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999988753
No 5
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=6.7e-29 Score=209.50 Aligned_cols=107 Identities=41% Similarity=0.769 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHcCCC---CCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhh
Q 017092 101 MEELIRQFGTILRNITQHKW---AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (377)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~---a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (377)
+.+.++.|..||..|.+++. +|||..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||
T Consensus 7 ~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (120)
T 3jvl_A 7 ISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNC 86 (120)
T ss_dssp SCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 34788999999999999886 999999999998889999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 178 MKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
++||+++|.++.+|..|+..|+..|..+..
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999998864
No 6
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.95 E-value=1e-28 Score=207.21 Aligned_cols=101 Identities=30% Similarity=0.582 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
.++.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 017092 182 DERSDVHVMAKTLLAKFEEKWLQ 204 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~ 204 (377)
+++|.++.+|..|+..|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 7
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=208.12 Aligned_cols=105 Identities=36% Similarity=0.592 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
.+.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||+
T Consensus 10 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 87 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTP 87 (123)
T ss_dssp CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 688899999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHhhCCCC
Q 017092 183 E-RSDVHVMAKTLLAKFEEKWLQLLPKV 209 (377)
Q Consensus 183 ~-~s~v~~~A~~L~~~fe~~~~~~~p~~ 209 (377)
+ +|.+|.+|..|+..|++.|..+++.+
T Consensus 88 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 88 NKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 99999999999999999999986544
No 8
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.95 E-value=1.1e-28 Score=208.51 Aligned_cols=100 Identities=34% Similarity=0.620 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCC
Q 017092 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (377)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (377)
.+..|..|+..|++|+.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46789999999999999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 017092 184 RSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
+|.++.+|..|++.|++.|..+
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999887
No 9
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=204.06 Aligned_cols=104 Identities=26% Similarity=0.337 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhc
Q 017092 101 MEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (377)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (377)
...+...|..|++.|++++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhC
Q 017092 181 NDERSDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
|+++|.++.+|..|++.|++.|....
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 10
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=2.8e-28 Score=205.39 Aligned_cols=105 Identities=33% Similarity=0.569 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhc
Q 017092 102 EELIRQFGTILRNITQ-HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~-~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (377)
.++.+.|..++..|+. ++.+|||..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4788899999999988 789999999999985569999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhC
Q 017092 181 NDERSDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
|+++|.+|.+|..|++.|++.|..++
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998874
No 11
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=7.2e-29 Score=213.50 Aligned_cols=105 Identities=38% Similarity=0.607 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
..+.+.|..||..|+.++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3688899999999999999999999999977 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhCCC
Q 017092 182 DE-RSDVHVMAKTLLAKFEEKWLQLLPK 208 (377)
Q Consensus 182 ~~-~s~v~~~A~~L~~~fe~~~~~~~p~ 208 (377)
++ +|.||.+|..|++.|++.|..+++.
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 9999999999999999999988654
No 12
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=5.2e-28 Score=208.18 Aligned_cols=105 Identities=31% Similarity=0.526 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhc--CCCCCHHHHHHHHHhhhhhhhhc
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA--KEYKNVREICTDVRLVFKNAMKY 180 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~--~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (377)
..++.|..||..|++|+.+++|..||+.. +||||++|++||||+||++||++ +.|.++.+|.+||+|||.||++|
T Consensus 20 ~~~~~c~~il~~L~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~y 96 (135)
T 2yyn_A 20 IDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEF 96 (135)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTT---STTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCccc---CCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999973 99999999999999999999998 58999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhCCCCc
Q 017092 181 NDERSDVHVMAKTLLAKFEEKWLQLLPKVT 210 (377)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~~p~~~ 210 (377)
|+++|.||.+|..|+..|+..|.+++|...
T Consensus 97 N~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 97 NEPDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999988654
No 13
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=205.81 Aligned_cols=103 Identities=28% Similarity=0.437 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Q 017092 103 ELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~------~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (377)
.+.+.|..|++.|++++ .+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 13 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 90 (123)
T 2dat_A 13 KLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN 90 (123)
T ss_dssp HHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 67889999999999986 6999999999887 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
|++||+++|.+|.+|..|++.|+..|+++++
T Consensus 91 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 91 AQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998754
No 14
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=5.5e-28 Score=204.30 Aligned_cols=101 Identities=27% Similarity=0.376 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
.+...|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 466789999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 017092 183 ERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
++|.+|.+|..|++.|+..|.++
T Consensus 85 ~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 85 KDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876
No 15
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=3.9e-28 Score=213.38 Aligned_cols=107 Identities=35% Similarity=0.592 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
.+...|..|+..|++++.+|+|..||++..+++||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||+
T Consensus 32 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 111 (154)
T 4alg_A 32 QLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNK 111 (154)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45667788999999999999999999999777999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCC
Q 017092 183 ERSDVHVMAKTLLAKFEEKWLQLLPKV 209 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~~p~~ 209 (377)
++|.|+.+|..|+++|+..|..+.+..
T Consensus 112 ~~s~i~~~A~~L~~~f~~~~~~l~~~~ 138 (154)
T 4alg_A 112 PTDDIVLMAQTLEKIFLQKVASMPQEE 138 (154)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTSCSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCchh
Confidence 999999999999999999999986543
No 16
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.95 E-value=4.1e-28 Score=215.81 Aligned_cols=105 Identities=27% Similarity=0.436 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
..+...|..||..|++++.+++|..||++..+++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 20 ~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 99 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYN 99 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 37888999999999999999999999998877799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhC
Q 017092 182 DERSDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
+++|.|+.+|..|+++|++.|..+.
T Consensus 100 ~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 100 TSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999998873
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.95 E-value=5.9e-28 Score=206.28 Aligned_cols=103 Identities=27% Similarity=0.428 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHcCC-------CCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 017092 102 EELIRQFGTILRNITQHK-------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~-------~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 174 (377)
..+.+.|..||+.|++++ .+++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 368889999999999875 6899999999877 9999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 017092 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
.||++||+++|.+|.+|..|++.|++.|..+.
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 119 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIE 119 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999884
No 18
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.95 E-value=1.5e-27 Score=202.36 Aligned_cols=102 Identities=25% Similarity=0.408 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHc------CCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Q 017092 103 ELIRQFGTILRNITQ------HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (377)
Q Consensus 103 ~l~~~~~~il~~l~~------~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (377)
.+.+.|..|++.|++ ++.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNN 92 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 567789999999998 567899999999887 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 017092 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
|+.||+++|.+|.+|..|++.|++.|.++.
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 93 ACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999874
No 19
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=203.95 Aligned_cols=106 Identities=30% Similarity=0.359 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHcCC------CCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 017092 101 MEELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174 (377)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~------~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 174 (377)
...+.+.|..|++.|.++. .+|||..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3467778888888888764 5999999999987 9999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 017092 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPK 208 (377)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~p~ 208 (377)
.||+.||+++|.+|.+|..|++.|++.|.++.+.
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887543
No 20
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.6e-27 Score=205.04 Aligned_cols=103 Identities=32% Similarity=0.461 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhc
Q 017092 101 MEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (377)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (377)
+..+...|..||+.|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 017092 181 NDERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
|+++|.+|.+|..|.+.|+..|...
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876
No 21
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.94 E-value=1.5e-27 Score=202.21 Aligned_cols=100 Identities=29% Similarity=0.369 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
.+...|..|+..|..++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 567789999999999999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 017092 183 ERSDVHVMAKTLLAKFEEKWLQ 204 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~ 204 (377)
++|.+|.+|..|.+.|++.|.+
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 91 PDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=1.7e-27 Score=199.74 Aligned_cols=103 Identities=22% Similarity=0.373 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHcC------CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Q 017092 103 ELIRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~------~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (377)
+.++.|..|+..|+++ +.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3577899999999988 46999999999887 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
|+.||+++|.+|.+|..|++.|+..+.++..
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998854
No 23
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.94 E-value=4.1e-27 Score=201.28 Aligned_cols=103 Identities=25% Similarity=0.394 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHcCC------CCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 017092 101 MEELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174 (377)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~------~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 174 (377)
...+..+|..+++.|.++. .++||..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3467888888888888764 4999999999887 9999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017092 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
.||++||+++|.++.+|..|++.|++.|.++
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987
No 24
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=4.1e-27 Score=198.60 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhh
Q 017092 102 EELIRQFGTILRNITQHKW------AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFK 175 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~------a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 175 (377)
..+...|..++..|..+.. +++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 3567788999999988765 999999999887 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017092 176 NAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 176 Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
||+.||+++|.+|.+|..|++.|+..|.++
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999987
No 25
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.93 E-value=1.9e-26 Score=201.76 Aligned_cols=104 Identities=27% Similarity=0.435 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcC-------CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhh
Q 017092 107 QFGTILRNITQH-------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (377)
Q Consensus 107 ~~~~il~~l~~~-------~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (377)
+|..|+..|+++ +.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.
T Consensus 28 ~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 28 RMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 455555555554 45999999999887 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCCCCchH
Q 017092 180 YNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (377)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~~~p~~~~~ 212 (377)
||+++|.||.+|..|++.|++.|.++.+...++
T Consensus 106 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d 138 (150)
T 3tlp_A 106 YNEEGSQVYNDAHILEKLLKEKRKELGPLPDDD 138 (150)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHccCCCChh
Confidence 999999999999999999999999998775544
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.93 E-value=2.2e-26 Score=203.00 Aligned_cols=103 Identities=27% Similarity=0.477 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHH-HHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 103 ELIRQFGTILRN-ITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 103 ~l~~~~~~il~~-l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
.+...|..|+.. |+.++.+|||..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344455555554 667899999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 182 DERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
+++|.|+.+|..|...|+..|.++..
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~~ 132 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYDE 132 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998743
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.93 E-value=5.8e-26 Score=203.11 Aligned_cols=101 Identities=32% Similarity=0.591 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
.....|..||..|+.++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 72 ~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 72 KDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp HHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 456789999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 017092 183 ERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
++|.+|.+|..|+++|++.|..+
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998765
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.93 E-value=2.2e-25 Score=190.63 Aligned_cols=104 Identities=25% Similarity=0.373 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhh
Q 017092 100 RMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (377)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (377)
.+.++...|..++..|..++.++||..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.
T Consensus 7 ~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 84 (130)
T 3dai_A 7 TFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALE 84 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 455778899999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHH----HHHHHHHHHHHHHHHHhh
Q 017092 180 YNDERSDV----HVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 180 YN~~~s~v----~~~A~~L~~~fe~~~~~~ 205 (377)
||+++|++ +.+|..|++.+...+...
T Consensus 85 yN~~~s~~~~~i~~~A~~L~~~~~~~i~~e 114 (130)
T 3dai_A 85 YNPDRDPGDRLIRHRACALRDTAYAIIKEE 114 (130)
T ss_dssp HCCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999977 678888888888887643
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.92 E-value=1.3e-25 Score=202.81 Aligned_cols=102 Identities=32% Similarity=0.544 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhc--CCCCCHHHHHHHHHhhhhhhhhc
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA--KEYKNVREICTDVRLVFKNAMKY 180 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~--~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (377)
.+.+.|..||..|+.++.+++|..||+.. +|+||++|++||||+||++||++ |.|.++.+|.+||+|||.||++|
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~y 157 (184)
T 3o36_A 81 IDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEF 157 (184)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999964 89999999999999999999998 78999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 181 NDERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
|+++|.|+.+|..|+.+|++.|.+++|
T Consensus 158 N~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 158 NEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999986
No 30
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=183.07 Aligned_cols=100 Identities=26% Similarity=0.434 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhh
Q 017092 100 RMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (377)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (377)
.+.+|...|..|+..|+.++.++||..| +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~ 81 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALE 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred cCCCCCH----HHHHHHHHHHHHHHHHHhhC
Q 017092 180 YNDERSD----VHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 180 YN~~~s~----v~~~A~~L~~~fe~~~~~~~ 206 (377)
||+++|+ ++.+|..|.+.|...++.-+
T Consensus 82 yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l 112 (131)
T 2dkw_A 82 YNPDKDPGDKIIRHRACTLKDTAHAIIAAEL 112 (131)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 57899999999999886544
No 31
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.91 E-value=2.7e-24 Score=197.65 Aligned_cols=104 Identities=31% Similarity=0.559 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhc---CCCCCHHHHHHHHHhhhhhhhh
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA---KEYKNVREICTDVRLVFKNAMK 179 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~---~~Y~s~~ef~~Dv~Lif~Na~~ 179 (377)
...+.|..||..|+.++.+++|..||+. . +|+||++|++||||+||++||++ |.|.++.+|.+||+|||.||++
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~--~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~ 157 (207)
T 3u5n_A 81 VDQRKCERLLLYLYCHELSIEFQEPVPA-S--IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCER 157 (207)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGSSCCCT-T--STTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhccCCh-h--hccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999987 3 99999999999999999999997 7999999999999999999999
Q ss_pred cCC-----------------CCCHHHHHHHHHHHHHHHHHHhhCCCC
Q 017092 180 YND-----------------ERSDVHVMAKTLLAKFEEKWLQLLPKV 209 (377)
Q Consensus 180 YN~-----------------~~s~v~~~A~~L~~~fe~~~~~~~p~~ 209 (377)
||+ ++|.++.+|..|+.+|+.+|.+++|..
T Consensus 158 yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 158 FNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999 999999999999999999999999863
No 32
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.91 E-value=3.2e-24 Score=204.19 Aligned_cols=103 Identities=24% Similarity=0.510 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCC
Q 017092 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (377)
.+...|..||..|.+++.++||..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCC
Confidence 678899999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCC
Q 017092 183 ERSDVHVMAKTLLAKFEEKWLQLLP 207 (377)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~~p 207 (377)
++|.++.+|..|...|+..|.++.+
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988743
No 33
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=196.87 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhcc--CCCChHHHHHHHhcC---CCCCHHHHHHHHHhhhhhhh
Q 017092 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVID--KPMDFSTIKKQMEAK---EYKNVREICTDVRLVFKNAM 178 (377)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk--~PMDL~tIk~kL~~~---~Y~s~~ef~~Dv~Lif~Na~ 178 (377)
.++.|..||..|+.|+.+|||.+||+ |+||++|+ +||||+||++||++| .|.++++|.+||+|||+||+
T Consensus 77 ~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~ 150 (189)
T 2ro1_A 77 NQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFN 150 (189)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999997 67999998 899999999999999 99999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHhhCCCC
Q 017092 179 KYNDERSDVHVMAKTLLAKFEEKWLQLLPKV 209 (377)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~~~~~p~~ 209 (377)
+|| +++.++.+|..|+++|+++|.++++..
T Consensus 151 ~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 151 KLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999 588899999999999999999998753
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=5.6e-24 Score=202.51 Aligned_cols=99 Identities=28% Similarity=0.497 Sum_probs=92.2
Q ss_pred HHHHHHHHH-HHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCC
Q 017092 106 RQFGTILRN-ITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (377)
Q Consensus 106 ~~~~~il~~-l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (377)
..|..++.. ++.++.+|||..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++
T Consensus 139 ~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~ 216 (265)
T 3uv5_A 139 FILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 216 (265)
T ss_dssp HHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 345555544 788999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhC
Q 017092 185 SDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 185 s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
|.+|.+|..|...|+..|..+.
T Consensus 217 s~~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 217 SQYTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=1e-23 Score=203.37 Aligned_cols=102 Identities=25% Similarity=0.520 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
..+...|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHc
Confidence 4567789999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh
Q 017092 182 DERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
+++|.++.+|..|.+.|++.|..+
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred CCchHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999887664
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=196.28 Aligned_cols=97 Identities=29% Similarity=0.531 Sum_probs=90.1
Q ss_pred HHHHH-HHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCH
Q 017092 108 FGTIL-RNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSD 186 (377)
Q Consensus 108 ~~~il-~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~ 186 (377)
|..++ ..|+.++.+|||..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++|.
T Consensus 174 l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~ 251 (292)
T 3aad_A 174 LDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 251 (292)
T ss_dssp HHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 44444 34788999999999999887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 017092 187 VHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 187 v~~~A~~L~~~fe~~~~~~~ 206 (377)
+|.+|..|+..|+..|..+.
T Consensus 252 i~~~A~~L~~~~~~~~~~~~ 271 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYD 271 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998873
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.87 E-value=1.3e-22 Score=196.96 Aligned_cols=87 Identities=32% Similarity=0.498 Sum_probs=84.0
Q ss_pred cCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHH
Q 017092 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (377)
Q Consensus 117 ~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~ 196 (377)
.|+.+|+|+.||++.. +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||+++|.||.+|..|+.
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4678999999999987 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 017092 197 KFEEKWLQL 205 (377)
Q Consensus 197 ~fe~~~~~~ 205 (377)
.|+..|.+.
T Consensus 255 ~f~~~~~~~ 263 (311)
T 2r0y_A 255 YFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999874
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=2.4e-22 Score=199.07 Aligned_cols=87 Identities=32% Similarity=0.498 Sum_probs=83.9
Q ss_pred cCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcCCCCCHHHHHHHHHHH
Q 017092 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (377)
Q Consensus 117 ~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~ 196 (377)
.|+.+|||+.||+... +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||+++|.||.+|..|+.
T Consensus 227 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 304 (361)
T 2r10_A 227 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 304 (361)
T ss_dssp SSCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3678999999999987 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 017092 197 KFEEKWLQL 205 (377)
Q Consensus 197 ~fe~~~~~~ 205 (377)
.|+..|.+.
T Consensus 305 ~f~~~~~~~ 313 (361)
T 2r10_A 305 YFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.81 E-value=1.1e-20 Score=187.16 Aligned_cols=98 Identities=23% Similarity=0.252 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcC--CCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCC-CHHHHHHHHHhhhhhhhhc
Q 017092 104 LIRQFGTILRNITQH--KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK-NVREICTDVRLVFKNAMKY 180 (377)
Q Consensus 104 l~~~~~~il~~l~~~--~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~-s~~ef~~Dv~Lif~Na~~Y 180 (377)
+...|..+|+.+.+. ..+++|+.||+... +||||+||++||||+||++|| +.|. ++.+|.+||+|||.||++|
T Consensus 79 ~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 79 FNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 344677788887653 46899999999988 999999999999999999998 5555 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 017092 181 NDERSDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~ 205 (377)
|+++|.||.+|..|+++|+..|.+.
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999865
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.81 E-value=2.1e-20 Score=181.48 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=82.7
Q ss_pred HHHHHHHHHc--CCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCC-CHHHHHHHHHhhhhhhhhcCCCC
Q 017092 108 FGTILRNITQ--HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK-NVREICTDVRLVFKNAMKYNDER 184 (377)
Q Consensus 108 ~~~il~~l~~--~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~-s~~ef~~Dv~Lif~Na~~YN~~~ 184 (377)
|..+|..+.. +..+++|+.||+... +||||+||++||||+||++|| +.|. ++.+|.+||+|||.||++||+++
T Consensus 33 ~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~ 108 (311)
T 2r0y_A 33 ISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYD 108 (311)
T ss_dssp HHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCC
Confidence 3344444443 347899999999888 999999999999999999999 5565 89999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 017092 185 SDVHVMAKTLLAKFEEKWLQL 205 (377)
Q Consensus 185 s~v~~~A~~L~~~fe~~~~~~ 205 (377)
|.||.+|..|++.|+..|.+.
T Consensus 109 s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 109 SLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999875
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=148.51 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Q 017092 103 ELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (377)
Q Consensus 103 ~l~~~~~~il~~l~~~~------~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (377)
.+...+..|+..++++. .+.+|+..|+.. |+||. +.||+|.+|++||..|.|.++++|..||.+||.|
T Consensus 7 ~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp HHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35567888888998874 689999988776 78998 9999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 017092 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLL 206 (377)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (377)
|++||.+||.||.+|..|+.+|...+.++.
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~eL~ 110 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDELC 110 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988764
No 42
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=4.8e-18 Score=135.90 Aligned_cols=74 Identities=30% Similarity=0.581 Sum_probs=69.6
Q ss_pred hhccCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhhCCCCC-CCCCeeEEeCcCCCHHHHHHHHHHHHHHHHhcC
Q 017092 262 QKCRKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQ-ATAEEVELDMDAQSESTLWRLKFFVKDALKSQG 335 (377)
Q Consensus 262 ~~~r~mt~eEK~~L~~~i~~L~~e~l~~vi~II~~~~P~~~-~~~~eiEiDid~L~~~TL~~L~~yV~~~L~~~g 335 (377)
..+++||++||++|+.+|+.||+++|.+|++||++++|.+. .+++|||||||.|++.|||+|++||.+||+.+.
T Consensus 13 ~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k~ 87 (90)
T 2jns_A 13 DKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKKR 87 (90)
T ss_dssp SSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhhc
Confidence 45899999999999999999999999999999999999987 578999999999999999999999999998753
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.62 E-value=6.7e-16 Score=138.74 Aligned_cols=98 Identities=14% Similarity=0.304 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCcccCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhhcC
Q 017092 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (377)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~pVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (377)
.++...+..||..|..++.++||+.+ .++.||||.||++||+.|.|.|+.+|.+||.|||.||..||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 36677899999999999999999773 15999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCCCCchH
Q 017092 182 DERSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (377)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~~p~~~~~ 212 (377)
.+++.+..++..|..+|++.++.++|++...
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~ 171 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPWFSVK 171 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTSCGG
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCCcc
Confidence 9999999999999999999999999987653
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=95.69 E-value=0.016 Score=47.77 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=53.7
Q ss_pred cCCCHHHHHHHHHHhcCCC-hhhHHHHHHHHHhhCCCCCCCCCeeEEeCcCCCHHHHHHHHHHHH
Q 017092 265 RKTSTEEKRKLGAALTRLS-PEDLGKALEIVAQSNTGFQATAEEVELDMDAQSESTLWRLKFFVK 328 (377)
Q Consensus 265 r~mt~eEK~~L~~~i~~L~-~e~l~~vi~II~~~~P~~~~~~~eiEiDid~L~~~TL~~L~~yV~ 328 (377)
.+--.+|-+.|...|..|. .+.|.+|+++|.+. +.+..++..+.+|+-+|+..|+++|+.|+.
T Consensus 57 ~~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~t-G~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 57 DKAYLDELVELHRRLMTLRERHILQQIVNLIEET-GHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp SCSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHTS-CCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc-CceeeecccccceeeccCHHHHHHHHHHHH
Confidence 3445678889999999995 56799999999974 467788999999999999999999999864
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.35 E-value=6.4 Score=27.51 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=27.7
Q ss_pred ccccccCCCCCchHHHHHHHhhHHHHHHhHHHHHHHHHHHHh
Q 017092 11 FTAVHAGNPESDVAEVESFTLRVDDIFQKVDKLEERVNEIEQ 52 (377)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~~~ 52 (377)
+...+-|.+....+|++.|+++++++..++..|..++.+..+
T Consensus 6 fIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 6 FLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444422245689999999999999999999999876654
No 46
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.10 E-value=1.2e+02 Score=20.25 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=23.9
Q ss_pred CchHHHHHHHhhH-HHHHHhHHHHHHHHHHH
Q 017092 21 SDVAEVESFTLRV-DDIFQKVDKLEERVNEI 50 (377)
Q Consensus 21 ~~~~~~~~~~~~~-~~~~~k~~~~~~~i~~~ 50 (377)
.+..|+++||+.| .|++..+.++.+.|.+.
T Consensus 4 ~~~~dle~~KqEIL~E~RkElqK~K~EIIeA 34 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKELQKVKEEIIEA 34 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558999999975 57888888988888654
No 47
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=24.41 E-value=1.7e+02 Score=22.22 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCeeEEeCcCCCHHHHHHHHHHHHHHHHh
Q 017092 285 EDLGKALEIVAQSNTGFQATAEEVELDMDAQSESTLWRLKFFVKDALKS 333 (377)
Q Consensus 285 e~l~~vi~II~~~~P~~~~~~~eiEiDid~L~~~TL~~L~~yV~~~L~~ 333 (377)
++...|.+.+.+..| |-|||+.++.+.-+++-+|+....-.
T Consensus 16 ~Da~~I~d~Lr~~~~--------VvvNL~~ld~~~AqRivDF~sG~~ya 56 (87)
T 3p04_A 16 EDAQVIGGAFRDGDA--------VVFDMSLLSREEARRIVDFAAGLCFA 56 (87)
T ss_dssp GGHHHHHHHHHTTCC--------EEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCE--------EEEECCCCCHHHHHHHHHHhccceEE
Confidence 455667777766544 89999999999999999999886543
No 48
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.52 E-value=1.2e+02 Score=17.57 Aligned_cols=22 Identities=14% Similarity=0.456 Sum_probs=16.9
Q ss_pred HHHHHhhHHHHHHhHHHHHHHH
Q 017092 26 VESFTLRVDDIFQKVDKLEERV 47 (377)
Q Consensus 26 ~~~~~~~~~~~~~k~~~~~~~i 47 (377)
+++|-..|+++.+..++|+.++
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888888888776
No 49
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.57 E-value=1.3e+02 Score=20.73 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=21.1
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHH
Q 017092 24 AEVESFTLRVDDIFQKVDKLEERVNE 49 (377)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~~~~~i~~ 49 (377)
..++.|-.+|++|..||..|...|+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888877754
Done!