BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017094
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 258 RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIG------DCPNFMALPGSLKDLEALET 311
RLR + I+ +L ELP+ L H ++ + +LP S+ +L+ L++
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 312 LAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPP 351
L IR P LS+L +HHL L+ L + GC AL R PP
Sbjct: 211 LKIRNSP-LSALGPAIHHLPKLEELDLRGCTAL--RNYPP 247
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 18/215 (8%)
Query: 112 FVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171
F + F S L+ + + L P + L L+RN ++ LP SI L L+
Sbjct: 96 FPDQAFRLSH-LQHXTIDAAGLXELPDTXQQFAGLETLTLARN-PLRALPASIASLNRLR 153
Query: 172 TXXXXXXXXXXXXPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHL 231
P+ L + S + G+ +L SLR L +G R L
Sbjct: 154 ELSIRACPELTELPE-----------PLASTDASGEHQGLVNLQSLR-LEWTGIRSLPAS 201
Query: 232 FEEIEQLSLL--RTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLV 289
++ L L R + + + P+L + ++ T L P + L L+
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLI 259
Query: 290 IGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLP 324
+ DC N + LP + L LE L +RGC LS LP
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 270 LLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM 327
L ELP Q L TL + P ALP S+ L L L+IR CP+L+ LPE +
Sbjct: 116 LXELPDTXQQFAG--LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPL 170
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 292 DCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKP 350
D LP + + LETL + P L +LP + L L+ L+I CP L+E +P
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEP 169
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 285 LHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL 344
L L + C P L+ L ++ C L +LP D+H LT L+ L + GC L
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 345 S 345
S
Sbjct: 291 S 291
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 116 CFSKSQFLRVLNLRESALEV---CPRKMGNLKHMRYLDLSRNSKI 157
C K + L+ L+L S +E C ++ NL+H++YL+LS N +
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL 388
>pdb|3MYD|A Chain A, Structure Of The Cytoplasmic Domain Of Flha From
Helicobacter Pylori
Length = 365
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 55 DLALLVNSDCQSIPKRVR-HLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEK-TSQSF 112
D+A LV +D + ++VR LS NA +++ GRL+ + FSTD E+
Sbjct: 229 DIAPLVQNDVNILTEQVRARLSRVITNAFKSED-------GRLKFLTFSTDSEQFLLNKL 281
Query: 113 VESCFSKSQFLRVLNLRE 130
E+ SKS L V L++
Sbjct: 282 RENGTSKSLLLNVGELQK 299
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 269 QLLELPQWLLQCCT-----------DTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGC 317
+ + +LLQ CT T+ L+ C N + +E LE C
Sbjct: 250 NVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVXDNSAIETLEPRVFXDC 309
Query: 318 PKLSS--LPEDMHHLTTLKLLAIGGCPALSERCKP 350
KLSS LP L T+++ A C ALS P
Sbjct: 310 VKLSSVTLPT---ALKTIQVYAFKNCKALSTISYP 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,751,143
Number of Sequences: 62578
Number of extensions: 353827
Number of successful extensions: 848
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 13
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)