Query 017094
Match_columns 377
No_of_seqs 217 out of 3245
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1.8E-25 4E-30 233.7 22.7 315 22-350 471-888 (1153)
2 PLN00113 leucine-rich repeat r 99.9 1.2E-24 2.5E-29 226.6 16.5 268 70-342 70-367 (968)
3 PLN00113 leucine-rich repeat r 99.9 1.2E-24 2.7E-29 226.4 15.7 266 69-342 118-415 (968)
4 KOG4658 Apoptotic ATPase [Sign 99.9 8.5E-25 1.8E-29 218.5 11.4 215 1-223 438-676 (889)
5 PLN03210 Resistant to P. syrin 99.9 2.9E-21 6.3E-26 202.2 18.4 267 68-349 588-911 (1153)
6 KOG0444 Cytoskeletal regulator 99.8 1.6E-22 3.4E-27 186.5 -1.7 273 69-351 78-382 (1255)
7 KOG4194 Membrane glycoprotein 99.8 2.8E-20 6.2E-25 170.3 4.1 297 66-374 75-406 (873)
8 KOG0444 Cytoskeletal regulator 99.8 3.9E-21 8.4E-26 177.3 -3.0 262 70-342 8-302 (1255)
9 KOG4194 Membrane glycoprotein 99.8 5.9E-20 1.3E-24 168.2 4.2 261 69-339 173-447 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 1.2E-20 2.7E-25 165.5 -3.2 105 120-226 182-308 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 3.7E-20 8E-25 162.6 -5.3 259 70-342 46-308 (565)
12 cd00116 LRR_RI Leucine-rich re 99.6 1.4E-16 3E-21 145.4 5.9 177 75-251 4-205 (319)
13 KOG0617 Ras suppressor protein 99.6 9.6E-17 2.1E-21 125.7 -2.9 164 141-329 30-194 (264)
14 PRK15387 E3 ubiquitin-protein 99.6 3.5E-14 7.6E-19 140.0 13.0 192 122-342 263-456 (788)
15 cd00116 LRR_RI Leucine-rich re 99.6 1.7E-15 3.6E-20 138.3 3.5 240 99-342 3-289 (319)
16 PRK15370 E3 ubiquitin-protein 99.6 2.2E-14 4.8E-19 142.1 11.5 199 122-342 221-426 (754)
17 PRK15370 E3 ubiquitin-protein 99.5 1.5E-14 3.2E-19 143.3 10.0 196 122-341 200-398 (754)
18 KOG0617 Ras suppressor protein 99.5 1.7E-16 3.6E-21 124.3 -3.1 157 89-251 28-185 (264)
19 KOG0618 Serine/threonine phosp 99.5 2E-15 4.4E-20 145.5 -1.8 221 115-343 258-488 (1081)
20 PRK15387 E3 ubiquitin-protein 99.5 1.7E-13 3.6E-18 135.3 9.7 221 68-325 241-463 (788)
21 KOG0618 Serine/threonine phosp 99.5 3.1E-15 6.6E-20 144.3 -2.6 93 120-214 44-136 (1081)
22 KOG4237 Extracellular matrix p 99.3 2.8E-13 6.1E-18 119.4 -2.5 129 95-226 68-199 (498)
23 KOG4341 F-box protein containi 99.3 2.5E-13 5.5E-18 120.6 -3.2 348 13-368 74-457 (483)
24 KOG4658 Apoptotic ATPase [Sign 99.2 2.2E-11 4.8E-16 122.8 9.2 129 69-201 545-677 (889)
25 KOG4237 Extracellular matrix p 99.2 2.3E-12 4.9E-17 113.8 0.4 248 65-319 63-358 (498)
26 KOG1909 Ran GTPase-activating 99.1 2E-11 4.4E-16 106.3 2.6 168 86-253 22-227 (382)
27 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.8E-16 113.9 -2.9 192 122-341 76-270 (722)
28 PF14580 LRR_9: Leucine-rich r 99.0 4.2E-10 9.1E-15 91.7 5.4 124 121-248 19-149 (175)
29 KOG0532 Leucine-rich repeat (L 99.0 2.3E-11 5E-16 112.2 -2.3 195 92-317 73-270 (722)
30 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.5E-15 104.5 1.5 197 142-342 119-337 (505)
31 KOG3207 Beta-tubulin folding c 98.9 1.8E-10 3.9E-15 103.3 0.9 212 70-319 122-338 (505)
32 COG4886 Leucine-rich repeat (L 98.9 1.1E-09 2.5E-14 102.9 5.8 178 117-320 112-290 (394)
33 KOG1259 Nischarin, modulator o 98.9 2.9E-10 6.3E-15 97.3 1.1 130 120-253 283-413 (490)
34 KOG1909 Ran GTPase-activating 98.9 5.5E-10 1.2E-14 97.5 2.8 230 110-342 19-309 (382)
35 COG4886 Leucine-rich repeat (L 98.9 2E-09 4.4E-14 101.2 6.7 193 125-344 97-290 (394)
36 KOG1259 Nischarin, modulator o 98.9 4.5E-10 9.8E-15 96.2 1.4 206 87-319 175-411 (490)
37 KOG4341 F-box protein containi 98.9 2.3E-10 4.9E-15 102.1 -1.1 256 94-350 138-420 (483)
38 KOG2120 SCF ubiquitin ligase, 98.8 2.3E-10 5E-15 97.8 -2.1 174 168-342 185-374 (419)
39 KOG2120 SCF ubiquitin ligase, 98.8 1.1E-09 2.4E-14 93.7 0.1 180 94-294 185-374 (419)
40 PF14580 LRR_9: Leucine-rich r 98.8 5.7E-09 1.2E-13 85.1 4.1 128 90-225 15-150 (175)
41 PLN03150 hypothetical protein; 98.5 2.5E-07 5.5E-12 91.5 7.6 109 145-253 419-529 (623)
42 PLN03150 hypothetical protein; 98.4 3.9E-07 8.5E-12 90.2 6.8 102 169-270 419-528 (623)
43 KOG0531 Protein phosphatase 1, 98.4 7.4E-08 1.6E-12 91.0 1.6 107 116-226 90-197 (414)
44 PF13855 LRR_8: Leucine rich r 98.4 6E-07 1.3E-11 60.0 4.9 57 121-178 1-59 (61)
45 KOG2982 Uncharacterized conser 98.4 3.1E-07 6.7E-12 79.0 3.7 93 280-375 196-292 (418)
46 PRK15386 type III secretion pr 98.3 3.5E-06 7.6E-11 77.3 9.4 181 164-366 48-235 (426)
47 KOG3665 ZYG-1-like serine/thre 98.3 7.5E-07 1.6E-11 88.2 4.8 132 69-205 122-263 (699)
48 PRK15386 type III secretion pr 98.2 8E-06 1.7E-10 75.0 10.2 93 117-224 48-141 (426)
49 PF13855 LRR_8: Leucine rich r 98.2 1.7E-06 3.6E-11 57.9 4.2 58 144-203 1-60 (61)
50 COG5238 RNA1 Ran GTPase-activa 98.2 4.1E-06 8.9E-11 71.4 5.9 14 305-318 301-314 (388)
51 KOG3665 ZYG-1-like serine/thre 98.1 2.8E-06 6E-11 84.3 5.5 153 93-249 121-285 (699)
52 KOG0531 Protein phosphatase 1, 98.1 7.2E-07 1.6E-11 84.3 1.1 129 120-253 71-200 (414)
53 KOG1859 Leucine-rich repeat pr 98.1 2.3E-07 5E-12 88.7 -2.5 126 122-252 165-292 (1096)
54 KOG2982 Uncharacterized conser 98.1 3E-06 6.6E-11 73.0 4.0 83 117-202 67-156 (418)
55 COG5238 RNA1 Ran GTPase-activa 98.1 1.3E-06 2.8E-11 74.3 1.6 91 88-178 24-130 (388)
56 KOG1947 Leucine rich repeat pr 98.0 1.6E-06 3.5E-11 83.6 1.6 236 110-350 177-446 (482)
57 KOG1947 Leucine rich repeat pr 97.9 2.5E-06 5.4E-11 82.4 0.6 227 89-322 183-442 (482)
58 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.5E-10 48.0 3.0 33 122-154 2-34 (44)
59 KOG4579 Leucine-rich repeat (L 97.7 6.4E-06 1.4E-10 63.0 -0.7 110 96-208 29-139 (177)
60 PF12799 LRR_4: Leucine Rich r 97.6 5.6E-05 1.2E-09 46.4 3.2 36 169-205 2-37 (44)
61 KOG1859 Leucine-rich repeat pr 97.6 1.4E-06 3.1E-11 83.5 -6.0 110 113-227 179-291 (1096)
62 KOG1644 U2-associated snRNP A' 97.2 0.00039 8.5E-09 57.0 4.2 101 122-225 43-150 (233)
63 KOG4579 Leucine-rich repeat (L 96.9 0.00016 3.5E-09 55.5 -0.8 94 89-187 48-141 (177)
64 KOG1644 U2-associated snRNP A' 96.9 0.002 4.3E-08 53.0 5.1 123 124-249 22-150 (233)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0014 3E-08 56.0 2.2 83 166-248 63-152 (260)
66 KOG2123 Uncharacterized conser 96.5 0.00025 5.3E-09 61.0 -2.7 97 70-174 20-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0013 2.8E-08 56.1 1.5 102 122-225 44-153 (260)
68 KOG2123 Uncharacterized conser 96.2 0.00066 1.4E-08 58.4 -1.8 81 168-251 19-100 (388)
69 PF13306 LRR_5: Leucine rich r 95.9 0.018 4E-07 44.5 5.5 59 89-152 7-66 (129)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0088 1.9E-07 30.5 1.6 20 122-141 1-20 (22)
71 PF13306 LRR_5: Leucine rich r 95.6 0.073 1.6E-06 41.0 7.6 102 116-224 7-112 (129)
72 KOG3864 Uncharacterized conser 94.9 0.0099 2.2E-07 48.9 0.9 83 217-317 103-186 (221)
73 KOG3864 Uncharacterized conser 94.8 0.0044 9.5E-08 51.0 -1.6 87 258-346 102-191 (221)
74 PF13504 LRR_7: Leucine rich r 93.2 0.062 1.3E-06 25.3 1.4 15 122-136 2-16 (17)
75 PF00560 LRR_1: Leucine Rich R 93.2 0.055 1.2E-06 27.5 1.3 19 169-188 1-19 (22)
76 smart00367 LRR_CC Leucine-rich 92.1 0.099 2.2E-06 27.7 1.5 18 330-347 1-18 (26)
77 KOG4308 LRR-containing protein 91.7 0.0058 1.3E-07 58.4 -6.4 84 71-154 89-182 (478)
78 KOG4308 LRR-containing protein 90.3 0.015 3.4E-07 55.6 -4.9 39 96-134 89-128 (478)
79 KOG0473 Leucine-rich repeat pr 86.1 0.04 8.6E-07 46.6 -4.4 86 90-180 38-123 (326)
80 smart00370 LRR Leucine-rich re 85.0 0.58 1.2E-05 24.6 1.3 16 122-137 3-18 (26)
81 smart00369 LRR_TYP Leucine-ric 85.0 0.58 1.2E-05 24.6 1.3 16 122-137 3-18 (26)
82 KOG0473 Leucine-rich repeat pr 84.6 0.072 1.6E-06 45.1 -3.5 63 164-227 61-123 (326)
83 PF13516 LRR_6: Leucine Rich r 75.8 1.7 3.7E-05 22.2 1.2 16 215-230 2-17 (24)
84 smart00364 LRR_BAC Leucine-ric 64.1 4.6 9.9E-05 21.4 1.2 17 122-138 3-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 51.2 12 0.00025 19.9 1.4 14 121-134 2-15 (26)
86 KOG3763 mRNA export factor TAP 49.3 14 0.00031 35.7 2.7 65 189-253 215-284 (585)
87 smart00368 LRR_RI Leucine rich 47.1 14 0.0003 19.8 1.4 12 122-133 3-14 (28)
88 KOG3763 mRNA export factor TAP 44.1 13 0.00029 35.9 1.6 63 166-229 216-284 (585)
89 PF14162 YozD: YozD-like prote 35.8 52 0.0011 20.5 2.7 23 14-36 9-31 (57)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.8e-25 Score=233.65 Aligned_cols=315 Identities=26% Similarity=0.419 Sum_probs=207.3
Q ss_pred HHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHHHhhcCCC----------------------CCCCCCcEEEEEec
Q 017094 22 YLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQ----------------------SIPKRVRHLSFAAA 79 (377)
Q Consensus 22 ~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~~~----------------------~~~~~l~~L~l~~~ 79 (377)
-+..|++++|++... + .+.|||++|+|++++..... ....+++.+.+.-.
T Consensus 471 ~l~~L~~ksLi~~~~-----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE-----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred ChHHHHhcCCEEEcC-----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 388899999998753 2 58999999999999754321 12234455555443
Q ss_pred cccccch-hhhhcccCCceEEEeecCCchh--------h--H-----------------HHHHHHhhccCcccEEEeCCC
Q 017094 80 NALRNDF-SSLLSYLGRLRTIFFSTDDEKT--------S--Q-----------------SFVESCFSKSQFLRVLNLRES 131 (377)
Q Consensus 80 ~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--------~--~-----------------~~~~~~~~~~~~L~~L~L~~~ 131 (377)
.+....+ ..+|..|++|+.|.+..+.... . . ..++..+ .+.+|+.|++.++
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s 621 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS 621 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc
Confidence 3333222 3467888888888775432100 0 0 0011111 2467888888888
Q ss_pred ccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcc-cccCccc
Q 017094 132 ALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ-KSLQESG 210 (377)
Q Consensus 132 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~ 210 (377)
.+..+|..+..+++|++|+++++..+..+|. ++.+++|++|++++|..+..+|..++++++|+.|++++|. +...|..
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 8888888888899999999988777788875 7788999999999988888899999999999999999864 4444443
Q ss_pred CCCCCCCCEEEccCCCCchhhHHhcc-------------------cCcccchhccccCCCCc-------------cCCCc
Q 017094 211 IRSLGSLRCLTISGCRDLEHLFEEIE-------------------QLSLLRTLLIHSYDDRK-------------NTRPR 258 (377)
Q Consensus 211 l~~l~~L~~L~l~~~~~~~~~~~~l~-------------------~l~~L~~L~l~~~~~~~-------------~~~~~ 258 (377)
+ ++++|+.|++++|..+..+|.... .+++|+.|.+.++.... ..+++
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 3 678888888888765544432111 12333333333211100 12346
Q ss_pred cceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccC------------------
Q 017094 259 LRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL------------------ 320 (377)
Q Consensus 259 L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~------------------ 320 (377)
|+.|++++++.+..+|..+ ..+++|+.|++++|..+..+|..+ .+++|+.|++++|..+
T Consensus 780 L~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred chheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 7777777777777777776 677777777777777666666544 4566666666655443
Q ss_pred --CCCCcCCCCCCCcCeeeccCCCCccccCCC
Q 017094 321 --SSLPEDMHHLTTLKLLAIGGCPALSERCKP 350 (377)
Q Consensus 321 --~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 350 (377)
+.+|..+..+++|+.|++.+|++|+..+..
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 334555566778888888888888776543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.2e-24 Score=226.65 Aligned_cols=268 Identities=21% Similarity=0.249 Sum_probs=159.0
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCC------------------
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRES------------------ 131 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~------------------ 131 (377)
+++.|++.++.+... ++..+..+++|++|++++|.+. .......+..+++|++|++++|
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 566666665544332 2445666666666666665432 1111122334444555554444
Q ss_pred ----ccc-cCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc
Q 017094 132 ----ALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL 206 (377)
Q Consensus 132 ----~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~ 206 (377)
.+. .+|..++.+++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|+.|++++|.+..
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 443 345555566666666666554444556666666666666666655445556666666666666666665552
Q ss_pred -CcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhh
Q 017094 207 -QESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQ 279 (377)
Q Consensus 207 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~ 279 (377)
.|..++.+++|+.|++++|.....+|..++.+++|+.|++++|.... ...++|++|+++++.....+|.++
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-- 304 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-- 304 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH--
Confidence 34556666666666666666555556666666666666666665432 123466777777665555566666
Q ss_pred cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 280 CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
..+++|+.|++++|.....+|.++..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 666777777777766555666666777777777777776555666666677777777777664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.2e-24 Score=226.44 Aligned_cols=266 Identities=18% Similarity=0.184 Sum_probs=127.5
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCcCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~ 147 (377)
+++++|.+.++.+... ++ ...+++|++|++++|... ...+..+..+++|++|++++|.+. .+|..++.+++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~-~p--~~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 118 SSLRYLNLSNNNFTGS-IP--RGSIPNLETLDLSNNMLS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCEEECcCCccccc-cC--ccccCCCCEEECcCCccc---ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 4667777766554321 11 133455666666555331 223334555555556655555543 4455555555555
Q ss_pred eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc-CcccCCCCCCCCEEEccCCC
Q 017094 148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 226 (377)
+|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|.+.. .|..++.+++|+.|++++|.
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 55555554444455555555555555555554444455555555555555555554442 23444555555555555544
Q ss_pred CchhhHHhcccCcccchhccccCCCCc------------------------------cCCCccceEEecccccccccchh
Q 017094 227 DLEHLFEEIEQLSLLRTLLIHSYDDRK------------------------------NTRPRLRRVFIKEITQLLELPQW 276 (377)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------------------~~~~~L~~L~l~~~~~~~~l~~~ 276 (377)
....+|..+..+++|+.|++++|.... ...++|+.|+++++.....+|.+
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 444444444444455555554443321 11234444444444333334444
Q ss_pred hhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 277 LLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 277 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
+ ..+++|+.|++++|.....+|.++..+++|+.|++++|.....+|..+..+++|+.|++.+|.
T Consensus 352 l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 352 L--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred H--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 3 344444444444443333334333344444444444443333444444445555555555553
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.91 E-value=8.5e-25 Score=218.46 Aligned_cols=215 Identities=29% Similarity=0.408 Sum_probs=170.6
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHHHhhcCCC---------------
Q 017094 1 MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQ--------------- 65 (377)
Q Consensus 1 iaeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~~~--------------- 65 (377)
||||||++.++++.+++.|..|+++|++++|++..... ++...|+|||++||+|+|++...+
T Consensus 438 iaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~---~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~ 514 (889)
T KOG4658|consen 438 IAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE---GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLS 514 (889)
T ss_pred HhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc---cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcc
Confidence 69999999768999999999999999999999998765 677899999999999999776110
Q ss_pred -----CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCc-cccCCcC
Q 017094 66 -----SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESA-LEVCPRK 139 (377)
Q Consensus 66 -----~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~~ 139 (377)
..+..+|++++.++.+.... .-..++.|++|.+.++.. ........+|..++.|++|||++|. +..+|..
T Consensus 515 ~~~~~~~~~~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 515 EIPQVKSWNSVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred ccccccchhheeEEEEeccchhhcc---CCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 01235688888877665533 344566899999998742 2344555679999999999999765 6799999
Q ss_pred cCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCc---ccCCCCCC
Q 017094 140 MGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE---SGIRSLGS 216 (377)
Q Consensus 140 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~---~~l~~l~~ 216 (377)
++.+-+|++|++++ +.++.+|..+++++.|.+|++..+.....+|.....+++|++|.+......... ..+..+.+
T Consensus 591 I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 591 IGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred HhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 99999999999996 689999999999999999999988777777777778999999999876533222 33445555
Q ss_pred CCEEEcc
Q 017094 217 LRCLTIS 223 (377)
Q Consensus 217 L~~L~l~ 223 (377)
|+.+...
T Consensus 670 L~~ls~~ 676 (889)
T KOG4658|consen 670 LENLSIT 676 (889)
T ss_pred hhhheee
Confidence 5555443
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.9e-21 Score=202.25 Aligned_cols=267 Identities=23% Similarity=0.282 Sum_probs=182.5
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCc-cccCCcCcCCCCcc
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESA-LEVCPRKMGNLKHM 146 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~l~~L 146 (377)
|..++.|.+.++.... +|..+ ...+|+.|++.++... .++..+..+++|+.|+|+++. +..+| .+..+++|
T Consensus 588 p~~Lr~L~~~~~~l~~--lP~~f-~~~~L~~L~L~~s~l~----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L 659 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRC--MPSNF-RPENLVKLQMQGSKLE----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL 659 (1153)
T ss_pred CcccEEEEecCCCCCC--CCCcC-CccCCcEEECcCcccc----ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence 4456666666554333 23223 3466666666665432 222334566667777776654 34444 35566666
Q ss_pred ceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC---------------------cccc
Q 017094 147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT---------------------KQKS 205 (377)
Q Consensus 147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~---------------------~~~~ 205 (377)
++|++++|..+..+|..+..+++|+.|++++|..+..+|..+ ++++|+.|++++ +.+.
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence 777766666666666666666666666666666666666544 445555555544 3333
Q ss_pred cCcccC------------------------------CCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc--
Q 017094 206 LQESGI------------------------------RSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-- 253 (377)
Q Consensus 206 ~~~~~l------------------------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-- 253 (377)
..|..+ ..+++|+.|++++|.....+|..++.+++|+.|++++|..+.
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 222111 113467788888887777788888899999999999887554
Q ss_pred ---cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCC
Q 017094 254 ---NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHL 330 (377)
Q Consensus 254 ---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 330 (377)
...++|+.|++++|..+..+|. ...+|+.|+++++ .+..+|.++..+++|+.|++++|+.++.+|.....+
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred CCCCCccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 2346789999999988877764 3468999999885 467899999999999999999999999999888999
Q ss_pred CCcCeeeccCCCCccccCC
Q 017094 331 TTLKLLAIGGCPALSERCK 349 (377)
Q Consensus 331 ~~L~~L~l~~c~~l~~~~~ 349 (377)
++|+.+++.+|++|+....
T Consensus 893 ~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 893 KHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cCCCeeecCCCcccccccC
Confidence 9999999999999986543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.6e-22 Score=186.46 Aligned_cols=273 Identities=24% Similarity=0.290 Sum_probs=188.6
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~ 147 (377)
+.+|++.+..++.....+|..+..+..|.+|+++.|... ..+..+...+++-+|+|++|.+..+|.. +.++..|-
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~----EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR----EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh----hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 366777777776666667777778888888888876543 3445566667778888888888877765 45777888
Q ss_pred eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccc--cCcccCCCCCCCCEEEccCC
Q 017094 148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKS--LQESGIRSLGSLRCLTISGC 225 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~l~~~ 225 (377)
+|++++ +.+..+|+.+..+.+|++|++++|.....--..+..+.+|+.|.+++++.+ .+|..+-.+.+|..++++.|
T Consensus 154 fLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 888885 477788888888888888888877543322233445666666777766554 34566667777777777765
Q ss_pred CCchhhHHhcccCcccchhccccCCCCc-----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCC-------
Q 017094 226 RDLEHLFEEIEQLSLLRTLLIHSYDDRK-----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDC------- 293 (377)
Q Consensus 226 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~------- 293 (377)
+ +..+|..+..+++|+.|++++|.+.. ....+|++|+++.+ .+..+|..+ ..+++|+.|...+|
T Consensus 233 ~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~av--cKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 233 N-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAV--CKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred C-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHH--hhhHHHHHHHhccCcccccCC
Confidence 4 55677777777888888888777655 22336777777764 444566655 55566655555444
Q ss_pred -----------------CCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCC
Q 017094 294 -----------------PNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPP 351 (377)
Q Consensus 294 -----------------~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 351 (377)
..++.+|+.++.|++|+.|.|+.|. +-.+|..+.-++.|+.|++..+|+|.--+.+.
T Consensus 309 PSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred ccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 2345667778888888888888764 44478888888899999999999888777664
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.8e-20 Score=170.30 Aligned_cols=297 Identities=18% Similarity=0.211 Sum_probs=155.7
Q ss_pred CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCC
Q 017094 66 SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLK 144 (377)
Q Consensus 66 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~ 144 (377)
..|...+.|.++++.+.+.. +..|.++++|+.+.+..|.. ..+|.+.....+|+.|+|.+|.+..+. +.+..++
T Consensus 75 ~lp~~t~~LdlsnNkl~~id-~~~f~nl~nLq~v~l~~N~L----t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHID-FEFFYNLPNLQEVNLNKNEL----TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred cCccceeeeeccccccccCc-HHHHhcCCcceeeeeccchh----hhcccccccccceeEEeeeccccccccHHHHHhHh
Confidence 33445555555555444433 22355555555555554432 223333333344555555555554332 2344455
Q ss_pred ccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccCc-ccCCCCCCCCEEE
Q 017094 145 HMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLT 221 (377)
Q Consensus 145 ~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~ 221 (377)
.|+.||++.| .+..+|. .+..-.++++|++++| .+..+ ...|..+.+|..|.++.|.++..| ..|.+++.|+.|+
T Consensus 150 alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 150 ALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 5555555543 3333332 1222345555555554 22222 223455556666666666666554 3444567777777
Q ss_pred ccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCC
Q 017094 222 ISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPN 295 (377)
Q Consensus 222 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 295 (377)
+..|.+-......+..+++|+.|.+..|++.+ ....++++|+|+.+....--..|+ .++.+|+.|+++.|..
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAI 305 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc--cccchhhhhccchhhh
Confidence 76665322223456677777777777776655 224467777776653222222344 5566666666666655
Q ss_pred CCCCCccCCCCccCceecccCcccCCCCC-------------------------cCCCCCCCcCeeeccCCCCccccCCC
Q 017094 296 FMALPGSLKDLEALETLAIRGCPKLSSLP-------------------------EDMHHLTTLKLLAIGGCPALSERCKP 350 (377)
Q Consensus 296 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-------------------------~~l~~l~~L~~L~l~~c~~l~~~~~~ 350 (377)
-...++.|..+++|+.|+|++|. ++.++ ..+..+++|++|++.++. -.++.+
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~--ls~~IE 382 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE--LSWCIE 382 (873)
T ss_pred heeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe--EEEEEe
Confidence 44455556666666666666653 22222 123345677777776653 123344
Q ss_pred CCCCCCCCCCccceEEeCCCccCC
Q 017094 351 PTGEDWPKIAHITQIELDDEIIKS 374 (377)
Q Consensus 351 ~~~~~~~~i~~~~~~~~~~~~~~~ 374 (377)
+...-|..+..+..+.+.|+++++
T Consensus 383 Daa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred cchhhhccchhhhheeecCceeee
Confidence 455556677777777777777664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=3.9e-21 Score=177.34 Aligned_cols=262 Identities=22% Similarity=0.291 Sum_probs=129.7
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL 149 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 149 (377)
.+|-.+++++++....+|.....|+.++-|-+.... ...++..++.+.+|+.|.+.+|.+..+-..+..++.|+.+
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~----L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK----LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhh----hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 455555556655555555556666666655554321 2233444445555555555555544444444444444444
Q ss_pred eccCCCccc--ccChhhcCCCcccEEeccCccccccCchhhccccccc------------------------EeeecCcc
Q 017094 150 DLSRNSKIK--KLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR------------------------VFALTTKQ 203 (377)
Q Consensus 150 ~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~------------------------~L~l~~~~ 203 (377)
.++.| .++ .+|+.+..+..|..||+++| .+..+|..+..-+++- +|++++|.
T Consensus 84 ~~R~N-~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDN-NLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhcc-ccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 44433 121 34444444444444554443 3444444444444444 44555554
Q ss_pred cccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-cCCC------ccceEEecccccccccchh
Q 017094 204 KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-NTRP------RLRRVFIKEITQLLELPQW 276 (377)
Q Consensus 204 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~------~L~~L~l~~~~~~~~l~~~ 276 (377)
+...|+.+..+..|++|.+++|.........+.+|++|+.|++++....- ..++ +|..++++. +.+..+|..
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec 240 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPEC 240 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHH
Confidence 44444444445555555555544332223333444445555444322111 1111 344444443 234445555
Q ss_pred hhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 277 LLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 277 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
+ ..+++|+.|++++|. ++.+....+...+|++|+++.| .++.+|..+..++.|+.|++.++.
T Consensus 241 l--y~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 241 L--YKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred H--hhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc
Confidence 5 455556666666543 3344434445556666666655 456677777777788877777664
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=5.9e-20 Score=168.25 Aligned_cols=261 Identities=19% Similarity=0.202 Sum_probs=166.4
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~ 147 (377)
.++.+|.+.++.+.+.. ...|..+.+|-+|.++.|.+. ......|+.+++|+.|+|..|.+... .-.|..++.|+
T Consensus 173 ~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrit---tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRIT---TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCceEEeeccccccccc-cccccccchheeeecccCccc---ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 35666666666665543 234666666666666665432 23334456666777777776666533 33566666777
Q ss_pred eEeccCCCcccccCh-hhcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccC
Q 017094 148 YLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISG 224 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~ 224 (377)
.|.+..| .+..+.+ +|..+.++++|++..|. +..+ ...+..+..|+.|++++|.+..+ +..+..+++|++|+++.
T Consensus 249 nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 249 NLKLQRN-DISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred hhhhhhc-CcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 7777654 4444433 35567778888887763 3333 34567788888888888887744 46788888888888888
Q ss_pred CCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccc---cccchhhhhcCCCCccEEeecCCCC
Q 017094 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQL---LELPQWLLQCCTDTLHTLVIGDCPN 295 (377)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~---~~l~~~~~~~~~~~L~~L~l~~~~~ 295 (377)
|+..+--+.++..+..|++|++++|.... ....+|++|+|+++... ++-...+ .++++|+.|.+.+|.
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f--~gl~~LrkL~l~gNq- 403 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF--NGLPSLRKLRLTGNQ- 403 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh--ccchhhhheeecCce-
Confidence 77655445567777788888888876544 22347777777776422 2222222 457788888888765
Q ss_pred CCCCCc-cCCCCccCceecccCcccCCCCCcCCCCCCCcCeeecc
Q 017094 296 FMALPG-SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIG 339 (377)
Q Consensus 296 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 339 (377)
++.+|. .|.+++.|++|+|.+|...+.-|..+..+ .|++|-+.
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 445543 46678888888888776655556666666 77777553
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.2e-20 Score=165.51 Aligned_cols=105 Identities=30% Similarity=0.451 Sum_probs=55.6
Q ss_pred cCcccEEEeCCCccccCCcCcCCCCccceEeccCC---------------------CcccccChhhc-CCCcccEEeccC
Q 017094 120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRN---------------------SKIKKLPKSIC-ELQSLQTLDLEG 177 (377)
Q Consensus 120 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~---------------------~~~~~l~~~~~-~l~~L~~L~l~~ 177 (377)
|+.|+.||...|-+..+|+.++.+.+|..|++.+| +.++.+|.... .++++.+||+++
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence 45555555555555555555555555555555543 23333343333 455555555555
Q ss_pred ccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094 178 CLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 178 ~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 226 (377)
| .+.++|.++-.+.+|.+|++++|.++..|..++++ .|+.|-+.||.
T Consensus 262 N-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 262 N-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred c-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 4 45555555555555556666666555555555555 55555555544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=3.7e-20 Score=162.56 Aligned_cols=259 Identities=25% Similarity=0.317 Sum_probs=202.3
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL 149 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 149 (377)
.+..+.+.+++.... .+...++..+.+|.+.+|.. ...+.+++.+..++.++++.++++.+|+.++.+..|..|
T Consensus 46 ~l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l----~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKL----SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKL 119 (565)
T ss_pred chhhhhhccCchhhc--cHhhhcccceeEEEeccchh----hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhh
Confidence 455566666665543 33577788888888887643 345566778888888888888888888888888888888
Q ss_pred eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094 150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE 229 (377)
Q Consensus 150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 229 (377)
+.++| ....+|+.++.+..|+.++..+| .+.++|.++.++.+|..+++.+|.++..++..-.++.|++++...| .++
T Consensus 120 ~~s~n-~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~ 196 (565)
T KOG0472|consen 120 DCSSN-ELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLE 196 (565)
T ss_pred hcccc-ceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhh
Confidence 88875 66777888888888888888765 6788888888888888888888888877666656888888887764 467
Q ss_pred hhHHhcccCcccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCC
Q 017094 230 HLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKD 305 (377)
Q Consensus 230 ~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~ 305 (377)
.+|+.++.+.+|..|++..|.... ..+..|++++.+.+ .++-+|.... ..++.+..|++.+|+ ++.+|+.++-
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~-~~L~~l~vLDLRdNk-lke~Pde~cl 273 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHL-KHLNSLLVLDLRDNK-LKEVPDEICL 273 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHh-cccccceeeeccccc-cccCchHHHH
Confidence 788888888888888888887655 33446777777654 4455665552 578999999999965 8899999999
Q ss_pred CccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 306 LEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 306 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
+++|++||+++| .++.+|..++++ +|+.|-+.|+|
T Consensus 274 LrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 274 LRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 999999999987 678899999999 99999988886
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1.4e-16 Score=145.39 Aligned_cols=177 Identities=18% Similarity=0.084 Sum_probs=93.8
Q ss_pred EEEeccccccchhhhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCcccc-------CCcCcCCCCcc
Q 017094 75 SFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALEV-------CPRKMGNLKHM 146 (377)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-------l~~~~~~l~~L 146 (377)
++.+.......+...+..+++|+.|.++++.... ....+...+...+.++.++++++.+.. ++..+..+++|
T Consensus 4 ~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L 83 (319)
T cd00116 4 SLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83 (319)
T ss_pred ccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCce
Confidence 3444444433344456666667777777665431 122344445566667777776665442 12344556677
Q ss_pred ceEeccCCCcccccChhhcCCCc---ccEEeccCccccc----cCchhhccc-ccccEeeecCcccccC-----cccCCC
Q 017094 147 RYLDLSRNSKIKKLPKSICELQS---LQTLDLEGCLELE----ELPKDIRYL-VILRVFALTTKQKSLQ-----ESGIRS 213 (377)
Q Consensus 147 ~~L~l~~~~~~~~l~~~~~~l~~---L~~L~l~~~~~~~----~~p~~l~~l-~~L~~L~l~~~~~~~~-----~~~l~~ 213 (377)
+.|++++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.++.. ...+..
T Consensus 84 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 163 (319)
T cd00116 84 QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163 (319)
T ss_pred eEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh
Confidence 77777665443333444444433 7777776664321 122334455 6677777777665521 123445
Q ss_pred CCCCCEEEccCCCCch----hhHHhcccCcccchhccccCCC
Q 017094 214 LGSLRCLTISGCRDLE----HLFEEIEQLSLLRTLLIHSYDD 251 (377)
Q Consensus 214 l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~ 251 (377)
+++|++|++++|.... .++..+..+++|+.|++++|..
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 5667777776665432 2233344455666666666654
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=9.6e-17 Score=125.66 Aligned_cols=164 Identities=29% Similarity=0.425 Sum_probs=124.3
Q ss_pred CCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEE
Q 017094 141 GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCL 220 (377)
Q Consensus 141 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 220 (377)
-.+.++..|.+++| .+..+|+.++.+++|+.|++.+| .++.+|..++.+++|+.|+++-|.+...|.+++.+|.|+.|
T Consensus 30 f~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 34566677777764 66667777777777777777764 67777777778888888888877777777888888888888
Q ss_pred EccCCCCch-hhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCC
Q 017094 221 TISGCRDLE-HLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL 299 (377)
Q Consensus 221 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l 299 (377)
+++.|+..+ .+|..+..|+.|+.|.++++++. -+|..+ +.+.+|+.|.+.+|. +-.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-------------------~lp~dv--g~lt~lqil~lrdnd-ll~l 165 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-------------------ILPPDV--GKLTNLQILSLRDND-LLSL 165 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-------------------cCChhh--hhhcceeEEeeccCc-hhhC
Confidence 888776433 45667778888999999888753 467777 888899999998865 5578
Q ss_pred CccCCCCccCceecccCcccCCCCCcCCCC
Q 017094 300 PGSLKDLEALETLAIRGCPKLSSLPEDMHH 329 (377)
Q Consensus 300 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 329 (377)
|..++.+..|++|.+.+| .++.+|..++.
T Consensus 166 pkeig~lt~lrelhiqgn-rl~vlppel~~ 194 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGN-RLTVLPPELAN 194 (264)
T ss_pred cHHHHHHHHHHHHhcccc-eeeecChhhhh
Confidence 888899999999999987 56767765543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=3.5e-14 Score=140.01 Aligned_cols=192 Identities=21% Similarity=0.202 Sum_probs=106.0
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT 201 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 201 (377)
+|+.|++.+|.+..+|... .+|+.|++++| .+..+|. ..++|+.|++++| .+..+|.. ..+|+.|++++
T Consensus 263 sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 263 GLLELSIFSNPLTHLPALP---SGLCKLWIFGN-QLTSLPV---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYN 331 (788)
T ss_pred ccceeeccCCchhhhhhch---hhcCEEECcCC-ccccccc---cccccceeECCCC-ccccCCCC---ccccccccccc
Confidence 4445555554444443321 34445555543 3444443 1245666666554 33444431 12345555555
Q ss_pred cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc--cCCCccceEEecccccccccchhhhh
Q 017094 202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEITQLLELPQWLLQ 279 (377)
Q Consensus 202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~ 279 (377)
|.++.+|. ...+|+.|++++|+.. .+|.. .++|+.|++++|.... ..+.+|+.|+++++ .+..+|..
T Consensus 332 N~L~~LP~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N-~Lt~LP~l--- 400 (788)
T PRK15387 332 NQLTSLPT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVL--- 400 (788)
T ss_pred Cccccccc---cccccceEecCCCccC-CCCCC---CcccceehhhccccccCcccccccceEEecCC-cccCCCCc---
Confidence 55554432 1235777777766532 33321 2355666666654433 12346777777765 34455532
Q ss_pred cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 280 CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
.++|+.|++++|. +..+|.. ..+|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 401 --~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 401 --PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 3567888888765 4556643 346777888876 456788777788888888888886
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=1.7e-15 Score=138.26 Aligned_cols=240 Identities=19% Similarity=0.124 Sum_probs=165.5
Q ss_pred EEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-----cCCcCcCCCCccceEeccCCCcc------cccChhhcCC
Q 017094 99 IFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-----VCPRKMGNLKHMRYLDLSRNSKI------KKLPKSICEL 167 (377)
Q Consensus 99 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~------~~l~~~~~~l 167 (377)
|++..+... .......+..+.+|++|+++++.+. .++..+...++|++|+++++... ..++..+..+
T Consensus 3 l~L~~~~l~--~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLK--TERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCccc--ccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 445444332 3344566777888999999999873 45666778888999999876433 1234567778
Q ss_pred CcccEEeccCccccccCchhhccccc---ccEeeecCcccccC-----cccCCCC-CCCCEEEccCCCCch----hhHHh
Q 017094 168 QSLQTLDLEGCLELEELPKDIRYLVI---LRVFALTTKQKSLQ-----ESGIRSL-GSLRCLTISGCRDLE----HLFEE 234 (377)
Q Consensus 168 ~~L~~L~l~~~~~~~~~p~~l~~l~~---L~~L~l~~~~~~~~-----~~~l~~l-~~L~~L~l~~~~~~~----~~~~~ 234 (377)
++|+.|++++|......+..+..+.+ |++|++++|.+... ...+..+ ++|+.|++++|.... .+...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 99999999998665555666655555 99999999987632 1345566 899999999998652 34455
Q ss_pred cccCcccchhccccCCCCc----------cCCCccceEEecccccc----cccchhhhhcCCCCccEEeecCCCCCCCCC
Q 017094 235 IEQLSLLRTLLIHSYDDRK----------NTRPRLRRVFIKEITQL----LELPQWLLQCCTDTLHTLVIGDCPNFMALP 300 (377)
Q Consensus 235 l~~l~~L~~L~l~~~~~~~----------~~~~~L~~L~l~~~~~~----~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~ 300 (377)
+..+++|++|++++|.... ...++|++|++++|... ..++..+ ..+++|++|++++|...+.-.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~--~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL--ASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh--cccCCCCEEecCCCcCchHHH
Confidence 6778899999999987653 22358999999887532 1233333 567889999999876332111
Q ss_pred ccC-----CCCccCceecccCcccCC----CCCcCCCCCCCcCeeeccCCC
Q 017094 301 GSL-----KDLEALETLAIRGCPKLS----SLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 301 ~~~-----~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~c~ 342 (377)
..+ ...+.|++|++++|.... .+...+..+++|+++++++|+
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 111 134789999999885431 233445666889999998875
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=2.2e-14 Score=142.07 Aligned_cols=199 Identities=21% Similarity=0.267 Sum_probs=95.4
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT 201 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 201 (377)
+|+.|++++|.++.+|..+. .+|+.|++++| .+..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCC
Confidence 55556666555555554332 34555565544 3445554432 35555666543 3444554332 3555566655
Q ss_pred cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCcc---CCCccceEEecccccccccchhhh
Q 017094 202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKN---TRPRLRRVFIKEITQLLELPQWLL 278 (377)
Q Consensus 202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~L~~L~l~~~~~~~~l~~~~~ 278 (377)
|.++..|..+. ++|+.|++++|... .+|..+ .++|+.|++++|..... .+++|+.|+++++. +..+|..+
T Consensus 293 N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-L~~LP~~l- 365 (754)
T PRK15370 293 NSIRTLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQ-ITVLPETL- 365 (754)
T ss_pred CccccCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccCChhhcCcccEEECCCCC-CCcCChhh-
Confidence 55554433221 34555555554432 233222 13555555555543321 12356666666552 33444332
Q ss_pred hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCC----CCCCCcCeeeccCCC
Q 017094 279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM----HHLTTLKLLAIGGCP 342 (377)
Q Consensus 279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~c~ 342 (377)
.++|++|++++|. +..+|..+. ..|+.|++++|. ++.+|..+ ..++++..|++.++|
T Consensus 366 ---p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 366 ---PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ---cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 1456666666553 334554332 245666666552 33444332 223555666666655
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=1.5e-14 Score=143.29 Aligned_cols=196 Identities=21% Similarity=0.311 Sum_probs=100.2
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT 201 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 201 (377)
+|+.|++++|.+..+|..+. .+|++|++++| .+..+|..+. .+|+.|++++| .+..+|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 56666666666665555433 35666666644 4455554332 35666666655 3445555443 3566666666
Q ss_pred cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCcc---CCCccceEEecccccccccchhhh
Q 017094 202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKN---TRPRLRRVFIKEITQLLELPQWLL 278 (377)
Q Consensus 202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~L~~L~l~~~~~~~~l~~~~~ 278 (377)
|.+...|..+. ++|+.|++++|+. ..+|..+. ++|+.|++++|..... .+++|+.|+++++. +..+|..+
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l- 344 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASL- 344 (754)
T ss_pred CccCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhh-
Confidence 66555443332 3566666666542 22332221 2456666665544321 22456666666552 33454433
Q ss_pred hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCC
Q 017094 279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGC 341 (377)
Q Consensus 279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c 341 (377)
+++|+.|++++|. +..+|..+ .++|++|++++| .++.+|..+. ++|+.|++++|
T Consensus 345 ---~~sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 345 ---PPELQVLDVSKNQ-ITVLPETL--PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred ---cCcccEEECCCCC-CCcCChhh--cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC
Confidence 2456666666653 33455433 245666666665 3444554332 24566666655
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.7e-16 Score=124.33 Aligned_cols=157 Identities=24% Similarity=0.339 Sum_probs=136.9
Q ss_pred hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC
Q 017094 89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ 168 (377)
Q Consensus 89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~ 168 (377)
.+.++.+++.|.++.|... .++..+..+.+|++|++.+|.+..+|..+..+++|+.|++.- +.+..+|.+|+.++
T Consensus 28 gLf~~s~ITrLtLSHNKl~----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p 102 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFP 102 (264)
T ss_pred cccchhhhhhhhcccCcee----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCc
Confidence 4667788888888887643 344457788999999999999999999999999999999985 47889999999999
Q ss_pred cccEEeccCcccc-ccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccc
Q 017094 169 SLQTLDLEGCLEL-EELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIH 247 (377)
Q Consensus 169 ~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 247 (377)
.|++||+.+|... ..+|..+..+..|+-|+++.|.+...|+.++++++|+.|.+.+|. +-.+|..++.++.|++|++.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcc
Confidence 9999999997544 358999999999999999999999999999999999999999876 45688999999999999999
Q ss_pred cCCC
Q 017094 248 SYDD 251 (377)
Q Consensus 248 ~~~~ 251 (377)
++..
T Consensus 182 gnrl 185 (264)
T KOG0617|consen 182 GNRL 185 (264)
T ss_pred ccee
Confidence 8753
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.49 E-value=2e-15 Score=145.54 Aligned_cols=221 Identities=21% Similarity=0.283 Sum_probs=112.5
Q ss_pred HHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcc-cc-
Q 017094 115 SCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRY-LV- 192 (377)
Q Consensus 115 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~-l~- 192 (377)
..+..+.+|+.++..+|.+..+|..+....+|+.|.+.+| .++.+|+....++.|++|++..| .+..+|..+-. +.
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNA 335 (1081)
T ss_pred HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhH
Confidence 3344444444444444444444444444444444444432 34444444444445555555443 33333332110 00
Q ss_pred cccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEec
Q 017094 193 ILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIK 265 (377)
Q Consensus 193 ~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~ 265 (377)
.|+.|+.+.+.+...+ .+=..++.|+.|.+.+|.......+.+..+.+|+.|++++|.... .....|++|+|+
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 1222222222222221 011123445555555555555555555566666666666664433 122356666666
Q ss_pred ccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCC-CCCcCCCCCCCcCeeeccCCCC
Q 017094 266 EITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLS-SLPEDMHHLTTLKLLAIGGCPA 343 (377)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~c~~ 343 (377)
++ .++.+|..+ ..++.|++|...+|. +..+| .+..++.|+.+|++.|.... .+|... .-|+|++|+++|+..
T Consensus 416 GN-kL~~Lp~tv--a~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 416 GN-KLTTLPDTV--ANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred cc-hhhhhhHHH--HhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence 64 556777666 566777777776654 55677 56778888888888664333 223322 227888888888764
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=1.7e-13 Score=135.27 Aligned_cols=221 Identities=19% Similarity=0.139 Sum_probs=156.9
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR 147 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~ 147 (377)
++++++|.+.++.+... |. ..++|++|++++|.+. .++. .+..|+.|++++|.+..+|.. +++|+
T Consensus 241 p~~Lk~LdLs~N~LtsL--P~---lp~sL~~L~Ls~N~L~----~Lp~---lp~~L~~L~Ls~N~Lt~LP~~---p~~L~ 305 (788)
T PRK15387 241 PPELRTLEVSGNQLTSL--PV---LPPGLLELSIFSNPLT----HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQ 305 (788)
T ss_pred CCCCcEEEecCCccCcc--cC---cccccceeeccCCchh----hhhh---chhhcCEEECcCCcccccccc---ccccc
Confidence 34566666666544432 21 1346666666665432 1222 235788999999999988763 47899
Q ss_pred eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCC
Q 017094 148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRD 227 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 227 (377)
.|++++| .+..+|.. ..+|+.|++++| .+..+|. ...+|+.|++++|.++..|.. ..+|+.|++++|..
T Consensus 306 ~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~---lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L 374 (788)
T PRK15387 306 ELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPT---LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL 374 (788)
T ss_pred eeECCCC-ccccCCCC---cccccccccccC-ccccccc---cccccceEecCCCccCCCCCC---Ccccceehhhcccc
Confidence 9999976 66677753 246888999887 5666764 235799999999999987643 45788889988764
Q ss_pred chhhHHhcccCcccchhccccCCCCcc--CCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCC
Q 017094 228 LEHLFEEIEQLSLLRTLLIHSYDDRKN--TRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKD 305 (377)
Q Consensus 228 ~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~ 305 (377)
. .+|.. ..+|+.|++++|..... .+++|+.|+++++. +..+|.. +.+|+.|++++|. +..+|..+..
T Consensus 375 ~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~-LssIP~l-----~~~L~~L~Ls~Nq-Lt~LP~sl~~ 443 (788)
T PRK15387 375 T-SLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNR-LTSLPML-----PSGLLSLSVYRNQ-LTRLPESLIH 443 (788)
T ss_pred c-cCccc---ccccceEEecCCcccCCCCcccCCCEEEccCCc-CCCCCcc-----hhhhhhhhhccCc-ccccChHHhh
Confidence 3 45542 35789999999876542 24589999999975 5567743 3578899999876 6789999999
Q ss_pred CccCceecccCcccCCCCCc
Q 017094 306 LEALETLAIRGCPKLSSLPE 325 (377)
Q Consensus 306 l~~L~~L~l~~~~~~~~~~~ 325 (377)
+++|+.|++++|+.....+.
T Consensus 444 L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccCCCeEECCCCCCCchHHH
Confidence 99999999999976655444
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=3.1e-15 Score=144.34 Aligned_cols=93 Identities=29% Similarity=0.403 Sum_probs=49.7
Q ss_pred cCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094 120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL 199 (377)
Q Consensus 120 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 199 (377)
.-+|+.|++++|.+..+|..+..+.+|+.|+++. +.+...|....++.+|++|.|.+ +.+..+|..+..+++|++|++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhccccccc
Confidence 3345555555555555555555555555555553 34555555555555555555553 245555555555555555555
Q ss_pred cCcccccCcccCCCC
Q 017094 200 TTKQKSLQESGIRSL 214 (377)
Q Consensus 200 ~~~~~~~~~~~l~~l 214 (377)
++|.+...|..+..+
T Consensus 122 S~N~f~~~Pl~i~~l 136 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVL 136 (1081)
T ss_pred chhccCCCchhHHhh
Confidence 555555444333333
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=2.8e-13 Score=119.43 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=67.3
Q ss_pred CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccceEeccCCCcccccCh-hhcCCCcccE
Q 017094 95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQT 172 (377)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~ 172 (377)
....|.+..|.+ ....+.+|+.+++|+.|||++|.++.+ |.+|.+++.|..|-+-+++.+..+|. .|+.+..|+.
T Consensus 68 ~tveirLdqN~I---~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQI---SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCCc---ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 334455555432 233344566666666666666666544 45566666655555555445555553 3445566666
Q ss_pred EeccCccccccCchhhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccCCC
Q 017094 173 LDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISGCR 226 (377)
Q Consensus 173 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 226 (377)
|.+.-|...-.....+..+++|..|.+..|.+..+.. .+..+.+++.+.+..|.
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 6554432212223345556666666666655554432 45555555555554443
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.26 E-value=2.5e-13 Score=120.58 Aligned_cols=348 Identities=18% Similarity=0.226 Sum_probs=223.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccc----cCccCCceeEEEEchhHHHHHHHhhcCCC-----CCCCCCcEEEEEeccccc
Q 017094 13 EDLEDIGMRYLKELLSRSFFQDLT----FGMVGMETFYFKMHDLMHDLALLVNSDCQ-----SIPKRVRHLSFAAANALR 83 (377)
Q Consensus 13 ~~~~~~~~~~~~~L~~~~l~~~~~----~~~~~~~~~~~~~~d~~~d~~~~~~~~~~-----~~~~~l~~L~l~~~~~~~ 83 (377)
.-+.|.--+.|.-|-.+++-+... ++.- .-...+..|--+.++.+.+..... .....++.|++.++....
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~-AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~ 152 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL-ALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVG 152 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-hhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCC
Confidence 345666666777666666655544 1100 111123334334444444332111 111467888998886655
Q ss_pred -cchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCc-cc--cCCcCcCCCCccceEeccCCCcccc
Q 017094 84 -NDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESA-LE--VCPRKMGNLKHMRYLDLSRNSKIKK 159 (377)
Q Consensus 84 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~--~l~~~~~~l~~L~~L~l~~~~~~~~ 159 (377)
.++...-..++++..|.+.++. ...+......-..|+.|+.|++..|. ++ .+......+++|+++++++|..+..
T Consensus 153 ~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 153 DSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred cchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence 3344556789999999998886 45666777778899999999999864 33 2222445789999999999876553
Q ss_pred --cChhhcCCCcccEEeccCcccccc--CchhhcccccccEeeecCcccccCcc---cCCCCCCCCEEEccCCCCchhhH
Q 017094 160 --LPKSICELQSLQTLDLEGCLELEE--LPKDIRYLVILRVFALTTKQKSLQES---GIRSLGSLRCLTISGCRDLEHLF 232 (377)
Q Consensus 160 --l~~~~~~l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~ 232 (377)
+......++.++.+..+||...+. +-..-..+..+..+++..|....... .-..+..|+.|..+++......+
T Consensus 232 ~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~ 311 (483)
T KOG4341|consen 232 NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV 311 (483)
T ss_pred CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH
Confidence 223344677788888888743321 11112345556666665653332211 12346778888888877654332
Q ss_pred -Hhc-ccCcccchhccccCCCCc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCC----
Q 017094 233 -EEI-EQLSLLRTLLIHSYDDRK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMA---- 298 (377)
Q Consensus 233 -~~l-~~l~~L~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~---- 298 (377)
.++ .++.+|+.+-++.|.... ..++.|+.+++.+|-...+..-.-.+.+++.|+.+.++.|..+..
T Consensus 312 l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 312 LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh
Confidence 333 457788888888876433 556688888888876554432222337889999999998865443
Q ss_pred -CCccCCCCccCceecccCcccCCC-CCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeC
Q 017094 299 -LPGSLKDLEALETLAIRGCPKLSS-LPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELD 368 (377)
Q Consensus 299 -l~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~ 368 (377)
+...-.++..|+.+.+++|+.+++ .-..+..+++|+++++.+|..+++..... ...|+|+++++
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~------~~~~lp~i~v~ 457 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR------FATHLPNIKVH 457 (483)
T ss_pred hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH------HHhhCccceeh
Confidence 244446788999999999998874 33456788999999999999888876654 34677777765
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=2.2e-11 Score=122.85 Aligned_cols=129 Identities=27% Similarity=0.388 Sum_probs=98.9
Q ss_pred CCCcEEEEEecc--ccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCcc
Q 017094 69 KRVRHLSFAAAN--ALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM 146 (377)
Q Consensus 69 ~~l~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L 146 (377)
+++++|-+..+. ....+ ...|..++.|++|++++|. ....+|..++.+-+|++|+++++.++.+|..+++++.|
T Consensus 545 ~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCC---ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 379999998875 33333 3348889999999999863 35678888999999999999999999999999999999
Q ss_pred ceEeccCCCcccccChhhcCCCcccEEeccCcc-c-cccCchhhcccccccEeeecC
Q 017094 147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCL-E-LEELPKDIRYLVILRVFALTT 201 (377)
Q Consensus 147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~-~~~~p~~l~~l~~L~~L~l~~ 201 (377)
.+|++..+.....+|.....+++|++|.+.... . ....-..+.++.+|+.+....
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999999877777777777779999999997643 1 111223445555565555543
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=2.3e-12 Score=113.81 Aligned_cols=248 Identities=18% Similarity=0.188 Sum_probs=156.9
Q ss_pred CCCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCC-CccccCCc-CcCC
Q 017094 65 QSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRE-SALEVCPR-KMGN 142 (377)
Q Consensus 65 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~l~~-~~~~ 142 (377)
.+.|+....+.+..+.+.... +.+|..+++||.|+++.|.+ ...-+.+|..++.|..|.+.+ |++..+|+ .|++
T Consensus 63 ~~LP~~tveirLdqN~I~~iP-~~aF~~l~~LRrLdLS~N~I---s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIP-PGAFKTLHRLRRLDLSKNNI---SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred ccCCCcceEEEeccCCcccCC-hhhccchhhhceecccccch---hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 345678888899988888764 67899999999999999854 455667888899888887776 88998876 5888
Q ss_pred CCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCch-hhcccccccEeeecCccccc-------------Cc
Q 017094 143 LKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTTKQKSL-------------QE 208 (377)
Q Consensus 143 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~-------------~~ 208 (377)
+..|+.|.+..|...-....++..+++|..|.+-+| ....++. .+..+..++.+.+..|.+.- .+
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 999999999876444455667888889988888875 5566655 56667777777666554110 00
Q ss_pred ccCCCCC----------------------CCCEE--EccC-CCCchhhH-HhcccCcccchhccccCCCCc------cCC
Q 017094 209 SGIRSLG----------------------SLRCL--TISG-CRDLEHLF-EEIEQLSLLRTLLIHSYDDRK------NTR 256 (377)
Q Consensus 209 ~~l~~l~----------------------~L~~L--~l~~-~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~------~~~ 256 (377)
.+++... .++.+ .+.+ +......| ..+..+++|++|++++|.... ...
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 1111110 01111 0111 11111112 235567777777777765543 112
Q ss_pred CccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094 257 PRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK 319 (377)
Q Consensus 257 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 319 (377)
..+++|.|.++ .+..+...++ ..+..|+.|++.+|.....-|..|..+..|.+|++-.|+.
T Consensus 298 a~l~eL~L~~N-~l~~v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 298 AELQELYLTRN-KLEFVSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhhcCcc-hHHHHHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 24555555443 2333333333 5667777788877766555666777777777777766543
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=2e-11 Score=106.33 Aligned_cols=168 Identities=20% Similarity=0.142 Sum_probs=111.6
Q ss_pred hhhhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCccc----cCC-------cCcCCCCccceEeccC
Q 017094 86 FSSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALE----VCP-------RKMGNLKHMRYLDLSR 153 (377)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~----~l~-------~~~~~l~~L~~L~l~~ 153 (377)
+.+....+..++.|++++|.++. ....+...+.+-++|+..++++-.-. .+| +++..+++|++|+||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34456677788888888887763 34445556777778888888764321 233 3445667888888888
Q ss_pred CCcccccCh----hhcCCCcccEEeccCcccccc-------------CchhhcccccccEeeecCcccccCc-----ccC
Q 017094 154 NSKIKKLPK----SICELQSLQTLDLEGCLELEE-------------LPKDIRYLVILRVFALTTKQKSLQE-----SGI 211 (377)
Q Consensus 154 ~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~-------------~p~~l~~l~~L~~L~l~~~~~~~~~-----~~l 211 (377)
|......+. .+.++..|++|++.+|..-.. ...-+++-++|+.+...+|++...+ ..+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 765554443 345678888888887743211 1112356678888888888776432 456
Q ss_pred CCCCCCCEEEccCCCCch----hhHHhcccCcccchhccccCCCCc
Q 017094 212 RSLGSLRCLTISGCRDLE----HLFEEIEQLSLLRTLLIHSYDDRK 253 (377)
Q Consensus 212 ~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~ 253 (377)
..++.|+.+.+..|.+.. .+...+.++++|+.|++.+|....
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 677888888888776432 344567788888888888887654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.3e-11 Score=113.91 Aligned_cols=192 Identities=24% Similarity=0.379 Sum_probs=153.3
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT 201 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 201 (377)
--...|++.|.+..+|..++.+..|+.+.+..| .+..+|..++++..|.+|+++.| .+..+|..+..|+ |+.|-+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence 345678888888889988888888888888864 67788888999999999999886 6778888888887 88999999
Q ss_pred cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcC
Q 017094 202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCC 281 (377)
Q Consensus 202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 281 (377)
|.++..|..++....|..|+.+.|+ +..+|..++.+.+|+.|.+..|. +..+|..+ ..
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-------------------l~~lp~El--~~ 210 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-------------------LEDLPEEL--CS 210 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-------------------hhhCCHHH--hC
Confidence 9999888888888889999988876 45677788888899999888764 34677777 53
Q ss_pred CCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCC---CCCCCcCeeeccCC
Q 017094 282 TDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM---HHLTTLKLLAIGGC 341 (377)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~c 341 (377)
-.|..||++.| .+..+|-.|..+..|++|.|.+|+. .+-|..+ +..--.++|+..-|
T Consensus 211 -LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 211 -LPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -CceeeeecccC-ceeecchhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence 35899999964 5788999999999999999999874 4444433 33334577888877
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4.2e-10 Score=91.72 Aligned_cols=124 Identities=30% Similarity=0.373 Sum_probs=41.9
Q ss_pred CcccEEEeCCCccccCCcCcC-CCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhh-cccccccEee
Q 017094 121 QFLRVLNLRESALEVCPRKMG-NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDI-RYLVILRVFA 198 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~ 198 (377)
..++.|+|.++.++.+. .++ .+.+|+.|++++| .+..++. +..+++|++|++++| .+..++..+ ..+++|+.|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEE
Confidence 35666777777766553 333 4566777777754 5555543 556677777777765 455554444 3567777777
Q ss_pred ecCcccccCc--ccCCCCCCCCEEEccCCCCchh---hHHhcccCcccchhcccc
Q 017094 199 LTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEH---LFEEIEQLSLLRTLLIHS 248 (377)
Q Consensus 199 l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~ 248 (377)
+++|.+.... ..+..+++|+.|++.+|..... -...+..+|+|+.|+-..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 7777665432 4556677788888777764321 233456677777776544
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=2.3e-11 Score=112.22 Aligned_cols=195 Identities=24% Similarity=0.315 Sum_probs=152.0
Q ss_pred ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094 92 YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171 (377)
Q Consensus 92 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 171 (377)
.+..-...+++.|.+. .++..+..|..|+.+.|..|.+-.+|..++.+..|.+|+++.| .+..+|..++.|+ |+
T Consensus 73 ~ltdt~~aDlsrNR~~----elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS----ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LK 146 (722)
T ss_pred cccchhhhhccccccc----cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ce
Confidence 3444445666666443 3445566777889999999999999999999999999999975 7888998888775 88
Q ss_pred EEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD 251 (377)
Q Consensus 172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 251 (377)
.|-+++| .+..+|..++.++.|.+|+.+.|.+...++.++.+.+|+.|.+..|+ +..+|..+..+ .|..|+++.|.
T Consensus 147 vli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNk- 222 (722)
T KOG0532|consen 147 VLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNK- 222 (722)
T ss_pred eEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCc-
Confidence 8888865 88999999999999999999999999999999999999999998876 45677777755 47888887654
Q ss_pred CccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCC---CCccCceecccCc
Q 017094 252 RKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLK---DLEALETLAIRGC 317 (377)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~---~l~~L~~L~l~~~ 317 (377)
+..+|..+ ..+..|++|.+.+|+ +..=|..++ ...--++|+..-|
T Consensus 223 ------------------is~iPv~f--r~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 ------------------ISYLPVDF--RKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ------------------eeecchhh--hhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 44788888 888999999999876 444444443 2223366777777
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-10 Score=104.46 Aligned_cols=197 Identities=18% Similarity=0.124 Sum_probs=99.1
Q ss_pred CCCccceEeccCCCcccccC--hhhcCCCcccEEeccCccccc---cCchhhcccccccEeeecCcccccCc--ccCCCC
Q 017094 142 NLKHMRYLDLSRNSKIKKLP--KSICELQSLQTLDLEGCLELE---ELPKDIRYLVILRVFALTTKQKSLQE--SGIRSL 214 (377)
Q Consensus 142 ~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~---~~p~~l~~l~~L~~L~l~~~~~~~~~--~~l~~l 214 (377)
++++|+...+.+ ..+...+ .....|++++.||+++| .+. .+......+|+|+.|+++.|.+.... ..-..+
T Consensus 119 n~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecC-ccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 344445555542 2333333 13344555555555554 222 12233455556666666655544221 111235
Q ss_pred CCCCEEEccCCCCch-hhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccE
Q 017094 215 GSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHT 287 (377)
Q Consensus 215 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~ 287 (377)
+.|+.|.+++|.... .+...+..+|+|+.|.+..|.... ..+..|++|+|++++.+ +++..-.-+.+|.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 556666666665432 233334456666666666663211 22335666666665433 3332111167788888
Q ss_pred EeecCCCCCC-CCCcc-----CCCCccCceecccCcccCCCCC--cCCCCCCCcCeeeccCCC
Q 017094 288 LVIGDCPNFM-ALPGS-----LKDLEALETLAIRGCPKLSSLP--EDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 288 L~l~~~~~~~-~l~~~-----~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~c~ 342 (377)
|.++.|..-+ ..|+. ...+++|++|++..|+. .+++ ..+..+++|+.|.+..++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhhhhhccccc
Confidence 8888765322 12332 34688888888888743 3333 224456677776655543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.8e-10 Score=103.25 Aligned_cols=212 Identities=17% Similarity=0.094 Sum_probs=97.0
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL 149 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 149 (377)
+++..++..+.............|++++.|+++.|-+ .....+......+++|+.|+|+.|.+........
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~-~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-------- 192 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF-HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-------- 192 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhH-HhHHHHHHHHHhcccchhcccccccccCCccccc--------
Confidence 4444455444333321112344555555555555422 2223333445555555555555555432211110
Q ss_pred eccCCCcccccChhhcCCCcccEEeccCccccc-cCchhhcccccccEeeecCcccc-cCcccCCCCCCCCEEEccCCCC
Q 017094 150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELE-ELPKDIRYLVILRVFALTTKQKS-LQESGIRSLGSLRCLTISGCRD 227 (377)
Q Consensus 150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 227 (377)
-..+++|+.|.+++|.... .+...+..+|+|+.|++.+|... .......-+..|++|+|++|+.
T Consensus 193 --------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 193 --------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred --------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 0123445555555543221 12223344555555555555311 1112233344566666666654
Q ss_pred chh-hHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCC--ccCC
Q 017094 228 LEH-LFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALP--GSLK 304 (377)
Q Consensus 228 ~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~--~~~~ 304 (377)
... .....+.++.|+.|+++.++......+..+.++. . ..+++|++|++..|+. ..++ ..+.
T Consensus 259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k------------t--~~f~kL~~L~i~~N~I-~~w~sl~~l~ 323 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK------------T--HTFPKLEYLNISENNI-RDWRSLNHLR 323 (505)
T ss_pred cccccccccccccchhhhhccccCcchhcCCCccchhh------------h--cccccceeeecccCcc-ccccccchhh
Confidence 331 1233556666666666666543321111111110 1 4567888888887663 2222 1244
Q ss_pred CCccCceecccCccc
Q 017094 305 DLEALETLAIRGCPK 319 (377)
Q Consensus 305 ~l~~L~~L~l~~~~~ 319 (377)
.+++|+.|.+..+..
T Consensus 324 ~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 324 TLENLKHLRITLNYL 338 (505)
T ss_pred ccchhhhhhcccccc
Confidence 566777777666544
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1.1e-09 Score=102.90 Aligned_cols=178 Identities=27% Similarity=0.346 Sum_probs=129.6
Q ss_pred hhccCcccEEEeCCCccccCCcCcCCCC-ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccccc
Q 017094 117 FSKSQFLRVLNLRESALEVCPRKMGNLK-HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR 195 (377)
Q Consensus 117 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 195 (377)
+...+.++.|++.++.+..++.....++ +|+.|++++| .+..+|..+..+++|+.|++++| .+..+|.....+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 4445789999999999999988888885 9999999964 77788767889999999999986 6777877777889999
Q ss_pred EeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccch
Q 017094 196 VFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQ 275 (377)
Q Consensus 196 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~ 275 (377)
.|++++|.+...+..+..+..|+++.+++|.. ...+..+..+.++..+.+.++... .++.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~-------------------~~~~ 249 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-------------------DLPE 249 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceee-------------------eccc
Confidence 99999999998876666777799999988752 334455666777777776665432 1233
Q ss_pred hhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccC
Q 017094 276 WLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL 320 (377)
Q Consensus 276 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 320 (377)
.+ ..++.+++|++++|. +..++. ++.+.+|+.|+++++...
T Consensus 250 ~~--~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 250 SI--GNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hh--ccccccceecccccc-cccccc-ccccCccCEEeccCcccc
Confidence 33 555667777776654 334443 566677777777765443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2.9e-10 Score=97.34 Aligned_cols=130 Identities=28% Similarity=0.248 Sum_probs=109.1
Q ss_pred cCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094 120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL 199 (377)
Q Consensus 120 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 199 (377)
...|+.+||++|.++.+-..+.-+++++.|++++| .+..+.. +..+++|+.||+++| .+.++...-..+.+++.|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 45789999999999999889999999999999987 4555544 889999999999997 56666555567889999999
Q ss_pred cCcccccCcccCCCCCCCCEEEccCCCCch-hhHHhcccCcccchhccccCCCCc
Q 017094 200 TTKQKSLQESGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLIHSYDDRK 253 (377)
Q Consensus 200 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~ 253 (377)
++|.+... ++++++-+|..|++.+|++.. .....++++|.|+.+.+.+|+...
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99988876 689999999999999988543 234679999999999999998654
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=5.5e-10 Score=97.50 Aligned_cols=230 Identities=20% Similarity=0.192 Sum_probs=156.6
Q ss_pred HHHHHHHhhccCcccEEEeCCCccc-----cCCcCcCCCCccceEeccCCCccc----ccCh-------hhcCCCcccEE
Q 017094 110 QSFVESCFSKSQFLRVLNLRESALE-----VCPRKMGNLKHMRYLDLSRNSKIK----KLPK-------SICELQSLQTL 173 (377)
Q Consensus 110 ~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~l~~-------~~~~l~~L~~L 173 (377)
...+......+..++.++|++|.+. .+.+.+...++|+..+++.- ..+ .+|+ ++..+++|++|
T Consensus 19 ~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 19 EKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred hhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 3445566788999999999999986 34456677789999999842 332 3343 45567899999
Q ss_pred eccCccccccCchh----hcccccccEeeecCcccccCc--------------ccCCCCCCCCEEEccCCCCc----hhh
Q 017094 174 DLEGCLELEELPKD----IRYLVILRVFALTTKQKSLQE--------------SGIRSLGSLRCLTISGCRDL----EHL 231 (377)
Q Consensus 174 ~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~~~~~--------------~~l~~l~~L~~L~l~~~~~~----~~~ 231 (377)
+|++|..-...+.. +.++..|++|++.+|.+.... ..+++-+.|+++....|..- ..+
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence 99998665554443 577899999999999776331 23566788999998887632 344
Q ss_pred HHhcccCcccchhccccCCCCc----------cCCCccceEEecccccccc----cchhhhhcCCCCccEEeecCCCCCC
Q 017094 232 FEEIEQLSLLRTLLIHSYDDRK----------NTRPRLRRVFIKEITQLLE----LPQWLLQCCTDTLHTLVIGDCPNFM 297 (377)
Q Consensus 232 ~~~l~~l~~L~~L~l~~~~~~~----------~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~~~L~~L~l~~~~~~~ 297 (377)
...+...+.|+.+.+..|++.. ..+++|+.|+|+++..... +...+ ..++.|+.|++++|..-.
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--SSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh--cccchheeeccccccccc
Confidence 5567778999999999988766 4567888888887653322 22222 455677888888774322
Q ss_pred C----CCccC-CCCccCceecccCcccCCC----CCcCCCCCCCcCeeeccCCC
Q 017094 298 A----LPGSL-KDLEALETLAIRGCPKLSS----LPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 298 ~----l~~~~-~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~c~ 342 (377)
. +...+ ...|+|++|.+.+|....+ +...+...|.|+.|++.+|.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1 12222 2577888888888754331 12223446788888888875
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=2e-09 Score=101.20 Aligned_cols=193 Identities=29% Similarity=0.359 Sum_probs=145.5
Q ss_pred EEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC-cccEEeccCccccccCchhhcccccccEeeecCcc
Q 017094 125 VLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ-SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ 203 (377)
Q Consensus 125 ~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 203 (377)
.+++..+.+......+..++.++.|++.+ ..+..+++....+. +|+.|+++++ .+..+|..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 57777777654445566668889999985 47778888777774 8999999886 677777778899999999999999
Q ss_pred cccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCC
Q 017094 204 KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTD 283 (377)
Q Consensus 204 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~ 283 (377)
+...+...+..+.|+.|++++|+. ..++..++....|+++.++++... ..+..+ ..+.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~-------------------~~~~~~--~~~~ 232 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-------------------ELLSSL--SNLK 232 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcce-------------------ecchhh--hhcc
Confidence 988876666888999999988763 556665555666888888876421 333333 5667
Q ss_pred CccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCc
Q 017094 284 TLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL 344 (377)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 344 (377)
++..+.+.++. +..++..+..+++++.|++++| .++.++. +..+.+++.|+++++...
T Consensus 233 ~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 233 NLSGLELSNNK-LEDLPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccccCCce-eeeccchhccccccceeccccc-ccccccc-ccccCccCEEeccCcccc
Confidence 77777766654 4445777889999999999987 5666666 888999999999987544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=4.5e-10 Score=96.21 Aligned_cols=206 Identities=18% Similarity=0.199 Sum_probs=106.9
Q ss_pred hhhhcccCCceEEEeecCCch-----hhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCccccc-
Q 017094 87 SSLLSYLGRLRTIFFSTDDEK-----TSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKL- 160 (377)
Q Consensus 87 ~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l- 160 (377)
...+..+..|..|.+++..-. .....++..+.-+++|+.+.++.|.-+.+......-+.|.++.+.. +.+...
T Consensus 175 ~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~-s~~~~~~ 253 (490)
T KOG1259|consen 175 SHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHN-TTIQDVP 253 (490)
T ss_pred HHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeec-ccccccc
Confidence 344555666777766654321 1122233334556677777777766554443333345666666653 222211
Q ss_pred ---Ch--------------------hhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCC
Q 017094 161 ---PK--------------------SICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSL 217 (377)
Q Consensus 161 ---~~--------------------~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L 217 (377)
|. .+-.++.|+++|+++| .+..+.....-.|.++.|++++|.+.... .+..+++|
T Consensus 254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L 331 (490)
T KOG1259|consen 254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQL 331 (490)
T ss_pred cccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeeh-hhhhcccc
Confidence 11 1112355666666664 45555555555666666666666666552 36666666
Q ss_pred CEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCC
Q 017094 218 RCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFM 297 (377)
Q Consensus 218 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 297 (377)
..|++++|.. ..+...-..+-++++|.++.|... ++ ..+ ..+-+|..|++++|. +.
T Consensus 332 ~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N~iE-------------------~L-SGL--~KLYSLvnLDl~~N~-Ie 387 (490)
T KOG1259|consen 332 QLLDLSGNLL-AECVGWHLKLGNIKTLKLAQNKIE-------------------TL-SGL--RKLYSLVNLDLSSNQ-IE 387 (490)
T ss_pred eEeecccchh-HhhhhhHhhhcCEeeeehhhhhHh-------------------hh-hhh--Hhhhhheeccccccc-hh
Confidence 6666666542 222222223445555555554321 11 112 445567777777764 22
Q ss_pred CCC--ccCCCCccCceecccCccc
Q 017094 298 ALP--GSLKDLEALETLAIRGCPK 319 (377)
Q Consensus 298 ~l~--~~~~~l~~L~~L~l~~~~~ 319 (377)
.+. ..++.+|.|+.+.+.+|+.
T Consensus 388 ~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 388 ELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hHHHhcccccccHHHHHhhcCCCc
Confidence 221 2467777888888777764
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.87 E-value=2.3e-10 Score=102.09 Aligned_cols=256 Identities=16% Similarity=0.152 Sum_probs=159.4
Q ss_pred CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc---cCCcCcCCCCccceEeccCCCcccccC--hhhcCCC
Q 017094 94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE---VCPRKMGNLKHMRYLDLSRNSKIKKLP--KSICELQ 168 (377)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~ 168 (377)
..|+.|.+.|+.- .....+..+...+++++.|.+.+|... .+-..-..+++|++|++..|..++... .....++
T Consensus 138 g~lk~LSlrG~r~-v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRA-VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccc-CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4677888877642 445566667778888888888777622 222334467888888888776655321 1223577
Q ss_pred cccEEeccCcccccc--CchhhcccccccEeeecCcccccCc---ccCCCCCCCCEEEccCCCCchhh--HHhcccCccc
Q 017094 169 SLQTLDLEGCLELEE--LPKDIRYLVILRVFALTTKQKSLQE---SGIRSLGSLRCLTISGCRDLEHL--FEEIEQLSLL 241 (377)
Q Consensus 169 ~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L 241 (377)
+|++|++++|..+.. +-.-...++.++.+...+|.-.... ..-+.++.+.++++..|..++.. ...-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 888888888765543 2233455566666666655333221 11233444556665566544322 2223456677
Q ss_pred chhccccCCCCc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCC--CCccCCCCccCce
Q 017094 242 RTLLIHSYDDRK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMA--LPGSLKDLEALET 311 (377)
Q Consensus 242 ~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~ 311 (377)
+.+..++|...+ ..+++|+.|.+.+|..+.+..-..++.+++.|+.+++..|..... +-..-.+++.|++
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 788777776654 556788888888887666655444556777888888877754332 2222347888999
Q ss_pred ecccCcccCCCC-----CcCCCCCCCcCeeeccCCCCccccCCC
Q 017094 312 LAIRGCPKLSSL-----PEDMHHLTTLKLLAIGGCPALSERCKP 350 (377)
Q Consensus 312 L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~c~~l~~~~~~ 350 (377)
|.++.|..+++. ...-..+..|..+.+++||.+++...+
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 999888777653 222345677888899999988887555
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.3e-10 Score=97.81 Aligned_cols=174 Identities=17% Similarity=0.118 Sum_probs=128.1
Q ss_pred CcccEEeccCccccc--cCchhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCchhhHH--hcccCcccc
Q 017094 168 QSLQTLDLEGCLELE--ELPKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFE--EIEQLSLLR 242 (377)
Q Consensus 168 ~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~ 242 (377)
..|++||++.. .+. .+-..++.|.+|+.|.+.+.++... ...+.+-.+|+.|+++.|...++... .+.+|+.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35899999864 333 2444578899999999999988854 36788889999999999987665432 367899999
Q ss_pred hhccccCCCCc--------cCCCccceEEeccccccccc-chhhhhcCCCCccEEeecCCCCCCC-CCccCCCCccCcee
Q 017094 243 TLLIHSYDDRK--------NTRPRLRRVFIKEITQLLEL-PQWLLQCCTDTLHTLVIGDCPNFMA-LPGSLKDLEALETL 312 (377)
Q Consensus 243 ~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L 312 (377)
.|++++|.... .-.+.|+.|+|+++...-.. -...+...+|+|..|++++|-.+.. ....+..++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 99999998765 33568999999998632111 1222337889999999999876554 33346689999999
Q ss_pred cccCcccCC-CCCcCCCCCCCcCeeeccCCC
Q 017094 313 AIRGCPKLS-SLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 313 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~c~ 342 (377)
.++.|..+. +-.-.+...|+|.+|++.+|-
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999997654 111125678999999998874
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.1e-09 Score=93.67 Aligned_cols=180 Identities=21% Similarity=0.203 Sum_probs=99.3
Q ss_pred CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCcCCCCccceEeccCCCccccc--ChhhcCCCcc
Q 017094 94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKHMRYLDLSRNSKIKKL--PKSICELQSL 170 (377)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L 170 (377)
+.|+.++++... .....+...++.|.+|+.|.+++..+. .+...++.-.+|+.|+++.|+.++.- .-.+.+|+.|
T Consensus 185 sRlq~lDLS~s~--it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSV--ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhh--eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 356677776543 234455556777777777777777665 33445556667777777776655532 2234567777
Q ss_pred cEEeccCccccccCch-hhcc-cccccEeeecCcccccCc----ccCCCCCCCCEEEccCCCCch-hhHHhcccCcccch
Q 017094 171 QTLDLEGCLELEELPK-DIRY-LVILRVFALTTKQKSLQE----SGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRT 243 (377)
Q Consensus 171 ~~L~l~~~~~~~~~p~-~l~~-l~~L~~L~l~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 243 (377)
..|++++|......-. .+.. -++|..|+++++.-.... .-...+++|.+|++++|..+. .....+.+++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 7777777643322111 1111 235666666665332211 223456677777776665443 33344556666666
Q ss_pred hccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCC
Q 017094 244 LLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCP 294 (377)
Q Consensus 244 L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~ 294 (377)
|.++.|..+. .+.-..+ ...|.|.+|++.+|-
T Consensus 343 lSlsRCY~i~-----------------p~~~~~l--~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYDII-----------------PETLLEL--NSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcCCC-----------------hHHeeee--ccCcceEEEEecccc
Confidence 6666655332 0111122 466778888887764
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=5.7e-09 Score=85.11 Aligned_cols=128 Identities=24% Similarity=0.322 Sum_probs=50.8
Q ss_pred hcccCCceEEEeecCCchhhHHHHHHHhh-ccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhh-cCC
Q 017094 90 LSYLGRLRTIFFSTDDEKTSQSFVESCFS-KSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI-CEL 167 (377)
Q Consensus 90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l 167 (377)
+.+...++.|++.++.... +.. +. .+.+|+.|++++|.+..+. .+..+++|++|++++| .+..++..+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~----Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST----IEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNL 87 (175)
T ss_dssp -------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccc----ccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhC
Confidence 4455567888888875432 222 33 5678899999999988774 5777889999999865 677776555 358
Q ss_pred CcccEEeccCccccccCc--hhhcccccccEeeecCcccccCc----ccCCCCCCCCEEEccCC
Q 017094 168 QSLQTLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQE----SGIRSLGSLRCLTISGC 225 (377)
Q Consensus 168 ~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~----~~l~~l~~L~~L~l~~~ 225 (377)
++|++|++++| .+..+. ..+..+++|+.|++.+|.+...+ ..+..+|+|+.||-...
T Consensus 88 p~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 89999999887 343331 34678889999999998887543 34567889999876543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=2.5e-07 Score=91.54 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=89.7
Q ss_pred ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc-CcccCCCCCCCCEEEcc
Q 017094 145 HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTIS 223 (377)
Q Consensus 145 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~ 223 (377)
.+..|++++|.....+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+.. .|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888998776666888889999999999999987767889899999999999999998884 56778999999999999
Q ss_pred CCCCchhhHHhcccC-cccchhccccCCCCc
Q 017094 224 GCRDLEHLFEEIEQL-SLLRTLLIHSYDDRK 253 (377)
Q Consensus 224 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 253 (377)
+|+....+|..++.. .++..+++.+|..+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 998877888877653 456677787776543
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=3.9e-07 Score=90.22 Aligned_cols=102 Identities=20% Similarity=0.131 Sum_probs=82.0
Q ss_pred cccEEeccCccccccCchhhcccccccEeeecCcccc-cCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccc
Q 017094 169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKS-LQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIH 247 (377)
Q Consensus 169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 247 (377)
.++.|++++|...+.+|..+..+++|+.|++++|.+. ..|..++.+++|+.|++++|+....+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999988777788999999999999999999887 456678999999999999998888889999999999999999
Q ss_pred cCCCCccCCC-------ccceEEecccccc
Q 017094 248 SYDDRKNTRP-------RLRRVFIKEITQL 270 (377)
Q Consensus 248 ~~~~~~~~~~-------~L~~L~l~~~~~~ 270 (377)
+|......+. ++..+++.+++.+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 9876543322 3445666665443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=7.4e-08 Score=91.01 Aligned_cols=107 Identities=28% Similarity=0.381 Sum_probs=64.6
Q ss_pred HhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccccc
Q 017094 116 CFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR 195 (377)
Q Consensus 116 ~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 195 (377)
.+..+.+|+.|++.++.+..+...+..+++|++|++++| .++.+.. +..++.|+.|++.+| .+..+. .+..+++|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGN-LISDIS-GLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccC-cchhcc-CCccchhhh
Confidence 356666777777777777666544666677777777754 4444433 555666777777765 333332 344466666
Q ss_pred EeeecCcccccCccc-CCCCCCCCEEEccCCC
Q 017094 196 VFALTTKQKSLQESG-IRSLGSLRCLTISGCR 226 (377)
Q Consensus 196 ~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 226 (377)
.+++++|.+..+... ...+.+++.+.+.+|.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 677777666655322 4556666666666654
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=6e-07 Score=60.01 Aligned_cols=57 Identities=32% Similarity=0.513 Sum_probs=36.3
Q ss_pred CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCc
Q 017094 121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGC 178 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 178 (377)
++|++|++++|.+..+|. .+..+++|++|++++| .+..++ .++..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 356777777777766653 5666777777777754 344443 35666777777777665
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=3.1e-07 Score=78.99 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=60.9
Q ss_pred cCCCCccEEeecCCCCCC-CCCccCCCCccCceecccCcccCCCCC--cCCCCCCCcCeeeccCCCCccccCCCCCCCCC
Q 017094 280 CCTDTLHTLVIGDCPNFM-ALPGSLKDLEALETLAIRGCPKLSSLP--EDMHHLTTLKLLAIGGCPALSERCKPPTGEDW 356 (377)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 356 (377)
.-||++..+.+..|+.-+ ...+....+|.+.-|+|+.+ .+.++. +.+..++.|+-|.+.+.|-+..... ....+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~ 272 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRF 272 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccC--CcceE
Confidence 456888888888775211 12333456677777777765 445443 4467889999999999886655533 33445
Q ss_pred CCCCccceEE-eCCCccCCC
Q 017094 357 PKIAHITQIE-LDDEIIKSS 375 (377)
Q Consensus 357 ~~i~~~~~~~-~~~~~~~~~ 375 (377)
.-|+++++++ .+|-.|.+.
T Consensus 273 llIaRL~~v~vLNGskIss~ 292 (418)
T KOG2982|consen 273 LLIARLTKVQVLNGSKISSR 292 (418)
T ss_pred EEEeeccceEEecCcccchh
Confidence 6689999997 457676653
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=3.5e-06 Score=77.32 Aligned_cols=181 Identities=21% Similarity=0.268 Sum_probs=108.3
Q ss_pred hcCCCcccEEeccCccccccCchhhcccccccEeeecCcc-cccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccc
Q 017094 164 ICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR 242 (377)
Q Consensus 164 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 242 (377)
+..++++..|++++| .+..+|. -..+|+.|.+++|. ++..|..+ .++|+.|.+++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445788999999988 7788872 23469999998753 33444333 46899999998866665554 355
Q ss_pred hhccccCC--CCccCCCccceEEecccccc--cccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcc
Q 017094 243 TLLIHSYD--DRKNTRPRLRRVFIKEITQL--LELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCP 318 (377)
Q Consensus 243 ~L~l~~~~--~~~~~~~~L~~L~l~~~~~~--~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 318 (377)
.|++..+. .+...|++|+.|.+.++... ..+|. .-.++|++|++++|..+ .+|..+- .+|+.|+++.+.
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~----~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDN----LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eEEeCCCCCcccccCcchHhheecccccccccccccc----ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 55555432 34466778888888653311 11111 11257999999988754 3444332 588899887653
Q ss_pred cCC-CCC-cCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEE
Q 017094 319 KLS-SLP-EDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIE 366 (377)
Q Consensus 319 ~~~-~~~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~ 366 (377)
... .++ ..+. +++ .|++.+|-.+......+.+-.+...+..++.+
T Consensus 189 ~~sLeI~~~sLP--~nl-~L~f~n~lkL~~~~f~d~~i~~~~~~~~~~~~ 235 (426)
T PRK15386 189 KTTWNISFEGFP--DGL-DIDLQNSVLLSPDVFKDKNITFQGNALDVALH 235 (426)
T ss_pred cccccCcccccc--ccc-EechhhhcccCHHHhhcccccccCcccchhcc
Confidence 111 122 1111 455 78888886665544444554444444444433
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.28 E-value=7.5e-07 Score=88.23 Aligned_cols=132 Identities=17% Similarity=0.268 Sum_probs=86.8
Q ss_pred CCCcEEEEEeccccccchh-hhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFS-SLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~ 147 (377)
.++++|++.+.......++ +....+|.|++|.+++-.+. .+.+.....++++|..||++++.++.+ ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 3788888877655443333 34456688998888885442 344566788888889999988888877 6778888888
Q ss_pred eEeccCCCcccccC--hhhcCCCcccEEeccCccccccCchhh-------cccccccEeeecCcccc
Q 017094 148 YLDLSRNSKIKKLP--KSICELQSLQTLDLEGCLELEELPKDI-------RYLVILRVFALTTKQKS 205 (377)
Q Consensus 148 ~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~p~~l-------~~l~~L~~L~l~~~~~~ 205 (377)
.|.+. |-.+.... ..+..+++|++||++....... +..+ ..+|+|+.||.+++.+.
T Consensus 199 ~L~mr-nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMR-NLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhcc-CCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchh
Confidence 88887 33333222 2366788888888887533222 2111 34667777777766544
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.24 E-value=8e-06 Score=75.03 Aligned_cols=93 Identities=19% Similarity=0.362 Sum_probs=63.1
Q ss_pred hhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccE
Q 017094 117 FSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRV 196 (377)
Q Consensus 117 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 196 (377)
+..+.+++.|++++|.+..+|. -..+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|. .|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 5567889999999998888872 23479999998888888777654 35889999998877766665 3556
Q ss_pred eeecCcccccCcccCCC-CCCCCEEEccC
Q 017094 197 FALTTKQKSLQESGIRS-LGSLRCLTISG 224 (377)
Q Consensus 197 L~l~~~~~~~~~~~l~~-l~~L~~L~l~~ 224 (377)
|++..+.... +.. .++|+.|.+.+
T Consensus 117 L~L~~n~~~~----L~~LPssLk~L~I~~ 141 (426)
T PRK15386 117 LEIKGSATDS----IKNVPNGLTSLSINS 141 (426)
T ss_pred EEeCCCCCcc----cccCcchHhheeccc
Confidence 6665443321 122 23466666643
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.7e-06 Score=57.86 Aligned_cols=58 Identities=34% Similarity=0.563 Sum_probs=31.6
Q ss_pred CccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCcc
Q 017094 144 KHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQ 203 (377)
Q Consensus 144 ~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~ 203 (377)
++|++|++++| .+..+|. ++..+++|++|++++| .+..++ ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666654 4455543 4555666666666654 333333 345556666666665554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=4.1e-06 Score=71.35 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=8.4
Q ss_pred CCccCceecccCcc
Q 017094 305 DLEALETLAIRGCP 318 (377)
Q Consensus 305 ~l~~L~~L~l~~~~ 318 (377)
.+|-|..|.+.+|.
T Consensus 301 ~~p~L~~le~ngNr 314 (388)
T COG5238 301 AVPLLVDLERNGNR 314 (388)
T ss_pred ccHHHHHHHHccCc
Confidence 45666666666653
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=2.8e-06 Score=84.31 Aligned_cols=153 Identities=23% Similarity=0.268 Sum_probs=103.2
Q ss_pred cCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc--cCCcCcCCCCccceEeccCCCcccccChhhcCCCcc
Q 017094 93 LGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE--VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL 170 (377)
Q Consensus 93 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L 170 (377)
-.+|+.|+++|... ....++...-.-+|.|+.|.+.+-.+. .+......+++|..||+++ +.++.+ .+++.+++|
T Consensus 121 r~nL~~LdI~G~~~-~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL-FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccch-hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccH
Confidence 35888899988543 344444455566789999999887664 3445566788999999996 577777 568889999
Q ss_pred cEEeccCccccccC--chhhcccccccEeeecCcccccCc-------ccCCCCCCCCEEEccCCCCchhhHHhc-ccCcc
Q 017094 171 QTLDLEGCLELEEL--PKDIRYLVILRVFALTTKQKSLQE-------SGIRSLGSLRCLTISGCRDLEHLFEEI-EQLSL 240 (377)
Q Consensus 171 ~~L~l~~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~ 240 (377)
++|.+.+ -..... -.++.+|++|+.||+|.......+ ..-..+|.|+.|+.+++.....+...+ ..-++
T Consensus 198 q~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 198 QVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHhccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 9998864 233322 235778999999999975443322 222448899999999887666555443 34456
Q ss_pred cchhccccC
Q 017094 241 LRTLLIHSY 249 (377)
Q Consensus 241 L~~L~l~~~ 249 (377)
|+.+..-+|
T Consensus 277 L~~i~~~~~ 285 (699)
T KOG3665|consen 277 LQQIAALDC 285 (699)
T ss_pred Hhhhhhhhh
Confidence 666554433
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=7.2e-07 Score=84.31 Aligned_cols=129 Identities=30% Similarity=0.352 Sum_probs=70.7
Q ss_pred cCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094 120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL 199 (377)
Q Consensus 120 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 199 (377)
+..++.+++..+.+...-..+..+++|+.|++..| .+..+...+..+++|++|++++| .+..+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence 34445555555555544444556666666666643 44444443555666666666664 444442 3455555666666
Q ss_pred cCcccccCcccCCCCCCCCEEEccCCCCchhhH-HhcccCcccchhccccCCCCc
Q 017094 200 TTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF-EEIEQLSLLRTLLIHSYDDRK 253 (377)
Q Consensus 200 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 253 (377)
++|.+... ..+..++.|+.+++++|.....-. . +..+.+++.+.+.++....
T Consensus 148 ~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 148 SGNLISDI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCcchhc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 66666655 345556666666666655433222 1 3455566666666655443
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=2.3e-07 Score=88.71 Aligned_cols=126 Identities=25% Similarity=0.212 Sum_probs=74.9
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhh-cccccccEeeec
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDI-RYLVILRVFALT 200 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~ 200 (377)
.|...+.++|.+..+-.++..++.|+.|++++|. +.... .+..+++|++|||++| .+..+|.-- ..+ +|..|++.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeec
Confidence 3555555666665555566667777777777663 33332 4666777777777775 445554311 122 37777777
Q ss_pred CcccccCcccCCCCCCCCEEEccCCCCchh-hHHhcccCcccchhccccCCCC
Q 017094 201 TKQKSLQESGIRSLGSLRCLTISGCRDLEH-LFEEIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 201 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 252 (377)
+|.++.. .++.++.+|+.|+++.|-..+. ...-+..+..|+.|.+.+|+..
T Consensus 241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7776655 4667777777777777543221 1112345566777777777643
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=3e-06 Score=73.04 Aligned_cols=83 Identities=23% Similarity=0.225 Sum_probs=35.8
Q ss_pred hhccCcccEEEeCCCcccc---CCcCcCCCCccceEeccCCCc---ccccChhhcCCCcccEEeccCcccc-ccCchhhc
Q 017094 117 FSKSQFLRVLNLRESALEV---CPRKMGNLKHMRYLDLSRNSK---IKKLPKSICELQSLQTLDLEGCLEL-EELPKDIR 189 (377)
Q Consensus 117 ~~~~~~L~~L~L~~~~~~~---l~~~~~~l~~L~~L~l~~~~~---~~~l~~~~~~l~~L~~L~l~~~~~~-~~~p~~l~ 189 (377)
-..+..++.+||.+|.++. +...+.++|+|++|+++.|.. ++.+| ...++|++|-+.+...- ......+.
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhh
Confidence 3444555555555555442 122233455555555553311 11222 12345555555443211 11223344
Q ss_pred ccccccEeeecCc
Q 017094 190 YLVILRVFALTTK 202 (377)
Q Consensus 190 ~l~~L~~L~l~~~ 202 (377)
.+|.++.|+++.|
T Consensus 144 ~lP~vtelHmS~N 156 (418)
T KOG2982|consen 144 DLPKVTELHMSDN 156 (418)
T ss_pred cchhhhhhhhccc
Confidence 5555666666655
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=1.3e-06 Score=74.31 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=52.6
Q ss_pred hhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCccc----c-------CCcCcCCCCccceEeccCCC
Q 017094 88 SLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALE----V-------CPRKMGNLKHMRYLDLSRNS 155 (377)
Q Consensus 88 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~----~-------l~~~~~~l~~L~~L~l~~~~ 155 (377)
..+..+..+..++++||.++. ....+...+.+-.+|++.+++.-... . +.+++.+|++|+..+++.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 345557777888888887663 23334445666667777776653221 1 12345566777777777665
Q ss_pred cccccCh----hhcCCCcccEEeccCc
Q 017094 156 KIKKLPK----SICELQSLQTLDLEGC 178 (377)
Q Consensus 156 ~~~~l~~----~~~~l~~L~~L~l~~~ 178 (377)
.....|+ .+++-..|++|.+.+|
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecC
Confidence 4443332 3445566666666665
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.04 E-value=1.6e-06 Score=83.65 Aligned_cols=236 Identities=21% Similarity=0.254 Sum_probs=122.6
Q ss_pred HHHHHHHhhccCcccEEEeCCCc-ccc--CCcCcCCCCccceEeccCC-CcccccC----hhhcCCCcccEEeccCcccc
Q 017094 110 QSFVESCFSKSQFLRVLNLRESA-LEV--CPRKMGNLKHMRYLDLSRN-SKIKKLP----KSICELQSLQTLDLEGCLEL 181 (377)
Q Consensus 110 ~~~~~~~~~~~~~L~~L~L~~~~-~~~--l~~~~~~l~~L~~L~l~~~-~~~~~l~----~~~~~l~~L~~L~l~~~~~~ 181 (377)
..........+++|+.|.+.++. +.. +-.....+++|+.|+++++ ......+ .....+.+|+.|++++|..+
T Consensus 177 ~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 177 DKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 33344444556777777777664 332 3344556777777777652 2211111 22334577777777776543
Q ss_pred ccC--chhhcccccccEeeecCcc-cccC--cccCCCCCCCCEEEccCCCCchh--hHHhcccCcccchhccccCCCCcc
Q 017094 182 EEL--PKDIRYLVILRVFALTTKQ-KSLQ--ESGIRSLGSLRCLTISGCRDLEH--LFEEIEQLSLLRTLLIHSYDDRKN 254 (377)
Q Consensus 182 ~~~--p~~l~~l~~L~~L~l~~~~-~~~~--~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 254 (377)
... ......+++|+.|.+.+|. ++.. ......++.|++|++++|..... +......+++|+.|.+.....
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--- 333 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--- 333 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---
Confidence 322 1112337778887766665 3322 23345677788888887776422 333344566666665544432
Q ss_pred CCCccceEEeccccccc-ccchhhhhcCCCCccEEeecCCCCCCCCC--ccCCCCc--------------cCceecccCc
Q 017094 255 TRPRLRRVFIKEITQLL-ELPQWLLQCCTDTLHTLVIGDCPNFMALP--GSLKDLE--------------ALETLAIRGC 317 (377)
Q Consensus 255 ~~~~L~~L~l~~~~~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~l~--~~~~~l~--------------~L~~L~l~~~ 317 (377)
++.++.+.+.++.... +.........+++++.+.+..+. ..... ..+.+++ .++.|++..|
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccC
Confidence 3344444444443332 11111111455555555555544 22111 1222333 3677788777
Q ss_pred ccCCCCC-cCCCC-CCCcCeeeccCCCCccccCCC
Q 017094 318 PKLSSLP-EDMHH-LTTLKLLAIGGCPALSERCKP 350 (377)
Q Consensus 318 ~~~~~~~-~~l~~-l~~L~~L~l~~c~~l~~~~~~ 350 (377)
...+.-. ..... +.+++.+++.+|+.++.....
T Consensus 412 ~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 412 RLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred ccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 6555321 11111 667788888888877776544
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.93 E-value=2.5e-06 Score=82.37 Aligned_cols=227 Identities=20% Similarity=0.231 Sum_probs=133.9
Q ss_pred hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCC-ccc-c----CCcCcCCCCccceEeccCCCccccc-C
Q 017094 89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRES-ALE-V----CPRKMGNLKHMRYLDLSRNSKIKKL-P 161 (377)
Q Consensus 89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~-~----l~~~~~~l~~L~~L~l~~~~~~~~l-~ 161 (377)
....+++|+.+.+.++.. .....+......+++|+.|+++++ ... . .......+++|+.|+++++..++.. -
T Consensus 183 l~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSK-ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHhhCchhhHhhhccccc-CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 344578888888887643 333335667888999999999873 211 1 1224456788999999987644421 1
Q ss_pred hhhc-CCCcccEEeccCcccccc--CchhhcccccccEeeecCcccccC---cccCCCCCCCCEEEccCCC---Cchh--
Q 017094 162 KSIC-ELQSLQTLDLEGCLELEE--LPKDIRYLVILRVFALTTKQKSLQ---ESGIRSLGSLRCLTISGCR---DLEH-- 230 (377)
Q Consensus 162 ~~~~-~l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~---~~~~-- 230 (377)
..++ .+++|++|.+.+|..+.. +-.....+++|++|++++|..... .....++++|+.|.+.... .++.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~ 341 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLS 341 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence 1222 388999999887754322 334456788899999998765421 1223446666665544432 1211
Q ss_pred ------------hHHhcccCcccchhccccCCCCccCCCccceEEeccccccc-ccchhhhhcCCCCccEEeecCCCCCC
Q 017094 231 ------------LFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLL-ELPQWLLQCCTDTLHTLVIGDCPNFM 297 (377)
Q Consensus 231 ------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~ 297 (377)
....+..++.++.+.+..+.... ....+.+.+|+.+. .+.... ..+..++.|+++.|....
T Consensus 342 l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~----~~~~~~l~gc~~l~~~l~~~~--~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 342 LSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISD----LGLELSLRGCPNLTESLELRL--CRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred HHHhhccCchhHhHHHHhcCCCcchhhhhhhhccC----cchHHHhcCCcccchHHHHHh--ccCCccceEecccCcccc
Confidence 11223456666666666655221 11146677777663 222222 444458999999887543
Q ss_pred CCC-ccCCC-CccCceecccCcccCCC
Q 017094 298 ALP-GSLKD-LEALETLAIRGCPKLSS 322 (377)
Q Consensus 298 ~l~-~~~~~-l~~L~~L~l~~~~~~~~ 322 (377)
.-. ..... +.+++.+++.+|...+.
T Consensus 416 ~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 416 DKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ccchHHHhhhhhccccCCccCcccccc
Confidence 321 11112 77788888888877663
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.5e-05 Score=47.96 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=19.5
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCC
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRN 154 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~ 154 (377)
+|++|++++|.++.+|+.++.|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 566666666666666555666666666666654
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.68 E-value=6.4e-06 Score=62.98 Aligned_cols=110 Identities=18% Similarity=0.259 Sum_probs=76.3
Q ss_pred ceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcC-CCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094 96 LRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMG-NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD 174 (377)
Q Consensus 96 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 174 (377)
+-.++++.|...... .....+....+|+..+|++|.++.+|+.+. ..+.++.|++++ +.+..+|..++.++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~-davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIA-DAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHH-HHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 334556665443222 233456666778888888888888877655 456788888885 47778888888888888888
Q ss_pred ccCccccccCchhhcccccccEeeecCcccccCc
Q 017094 175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQE 208 (377)
Q Consensus 175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~ 208 (377)
++.| .+...|..+..+.++-.|+..++....++
T Consensus 107 l~~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFN-PLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccC-ccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 8875 56667777777777777777777666554
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=5.6e-05 Score=46.41 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=13.9
Q ss_pred cccEEeccCccccccCchhhcccccccEeeecCcccc
Q 017094 169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKS 205 (377)
Q Consensus 169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 205 (377)
+|++|++++| .+..+|..+++|++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCC
Confidence 3444444443 33334333444444444444444333
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=1.4e-06 Score=83.49 Aligned_cols=110 Identities=25% Similarity=0.290 Sum_probs=82.3
Q ss_pred HHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhh-cCCCcccEEeccCccccccCchhhccc
Q 017094 113 VESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI-CELQSLQTLDLEGCLELEELPKDIRYL 191 (377)
Q Consensus 113 ~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~p~~l~~l 191 (377)
+...+.-++.|+.|+|+.|++...- .+..|++|+.||+++| .+..+|..- ..+ +|+.|.+++| .+..+ .++.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeeccc-HHHhh-hhHHhh
Confidence 3445666788999999999987664 7788899999999986 566666421 133 4999999876 55555 468899
Q ss_pred ccccEeeecCcccccCc--ccCCCCCCCCEEEccCCCC
Q 017094 192 VILRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRD 227 (377)
Q Consensus 192 ~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~ 227 (377)
.+|+.|++++|-+.... ..+..+..|+.|++.||..
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99999999998776542 3456677788889988864
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00039 Score=56.95 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=54.9
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhc-CCCcccEEeccCccccccCc--hhhcccccccEee
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSIC-ELQSLQTLDLEGCLELEELP--KDIRYLVILRVFA 198 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~ 198 (377)
+...+||++|.+..++ .+..++.|++|.++.| .+..+.+.+. .+++|..|.+.+| .+..+. .-+..||.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 5566677777665442 4455667777777643 4454444443 3556777777665 333321 1234556666666
Q ss_pred ecCcccccCc----ccCCCCCCCCEEEccCC
Q 017094 199 LTTKQKSLQE----SGIRSLGSLRCLTISGC 225 (377)
Q Consensus 199 l~~~~~~~~~----~~l~~l~~L~~L~l~~~ 225 (377)
+-+|...... -.+..+|+|+.|+..+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6665544321 34455666666665543
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.91 E-value=0.00016 Score=55.49 Aligned_cols=94 Identities=24% Similarity=0.282 Sum_probs=72.5
Q ss_pred hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC
Q 017094 89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ 168 (377)
Q Consensus 89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~ 168 (377)
.+..-.+|..+++++|.+ .++.+.+-.+++.++.|++++|.+..+|..+..++.|+.|+++.| .+...|..+..+.
T Consensus 48 ~l~~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLI 123 (177)
T ss_pred HHhCCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHH
Confidence 445556777888888754 445556667778889999999999999999999999999999965 6677788888888
Q ss_pred cccEEeccCccccccCchh
Q 017094 169 SLQTLDLEGCLELEELPKD 187 (377)
Q Consensus 169 ~L~~L~l~~~~~~~~~p~~ 187 (377)
++-.|+..++ -...+|.+
T Consensus 124 ~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred hHHHhcCCCC-ccccCcHH
Confidence 8888888775 34445544
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.002 Score=52.95 Aligned_cols=123 Identities=25% Similarity=0.298 Sum_probs=73.4
Q ss_pred cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhh-cccccccEeeecCc
Q 017094 124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDI-RYLVILRVFALTTK 202 (377)
Q Consensus 124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~ 202 (377)
+.++|.+.++..+...-.-+.....++++.| .+..++. +-.+++|.+|.+..| .+..+.+.+ ..+++|..|.+++|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhccccccccceeccccc-chhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCc
Confidence 4555665555433221112345667777754 4444443 556778888888765 444444444 44567888888887
Q ss_pred ccccC--cccCCCCCCCCEEEccCCCCchh---hHHhcccCcccchhccccC
Q 017094 203 QKSLQ--ESGIRSLGSLRCLTISGCRDLEH---LFEEIEQLSLLRTLLIHSY 249 (377)
Q Consensus 203 ~~~~~--~~~l~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~ 249 (377)
.+... ...+..||.|+.|.+-+|+.... -...+..+|+|+.|++..-
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 76643 25677788888888777663221 1123556778888877654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0014 Score=55.96 Aligned_cols=83 Identities=18% Similarity=0.108 Sum_probs=45.4
Q ss_pred CCCcccEEeccCc--cccccCchhhcccccccEeeecCcccccC--cccCCCCCCCCEEEccCCCCch---hhHHhcccC
Q 017094 166 ELQSLQTLDLEGC--LELEELPKDIRYLVILRVFALTTKQKSLQ--ESGIRSLGSLRCLTISGCRDLE---HLFEEIEQL 238 (377)
Q Consensus 166 ~l~~L~~L~l~~~--~~~~~~p~~l~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~---~~~~~l~~l 238 (377)
.+++|++|.++.| .....++.-...+++|+++++++|++... ...+..+.+|..|++.+|.... .--..+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4566777777665 23333444445557777777777766642 1445566667777777665332 111223345
Q ss_pred cccchhcccc
Q 017094 239 SLLRTLLIHS 248 (377)
Q Consensus 239 ~~L~~L~l~~ 248 (377)
++|+.|+=.+
T Consensus 143 ~~L~~LD~~d 152 (260)
T KOG2739|consen 143 PSLKYLDGCD 152 (260)
T ss_pred hhhccccccc
Confidence 5566555433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.00025 Score=61.00 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=63.8
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC--cCcCCCCccc
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP--RKMGNLKHMR 147 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~~~~~l~~L~ 147 (377)
+++.|.+.++.+.+.+ ...+|+.|++|.++-|.... ...+..|++|+.|.|..|.+..+- ..+.++++|+
T Consensus 20 ~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIss-----L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISS-----LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccHHH---HHHhcccceeEEeecccccc-----chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 5666777777777655 56678888888888765432 134677788888888888776553 2456777888
Q ss_pred eEeccCCCcccccCh-----hhcCCCcccEEe
Q 017094 148 YLDLSRNSKIKKLPK-----SICELQSLQTLD 174 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~-----~~~~l~~L~~L~ 174 (377)
.|+|..|...+.-+. .+.-+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888776654443322 344567777775
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.0013 Score=56.14 Aligned_cols=102 Identities=22% Similarity=0.194 Sum_probs=45.9
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCC--CcccccChhhcCCCcccEEeccCccc--cccCchhhcccccccEe
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRN--SKIKKLPKSICELQSLQTLDLEGCLE--LEELPKDIRYLVILRVF 197 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~l~~~~~--~~~~p~~l~~l~~L~~L 197 (377)
.|+.|++.++.++.+ ..+-.+++|+.|.++.| .....++.....+++|++|++++|.. +.+++ .+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhh
Confidence 344444444443322 12334456666666644 22223333344456666666665521 11221 23445555555
Q ss_pred eecCcccccCc----ccCCCCCCCCEEEccCC
Q 017094 198 ALTTKQKSLQE----SGIRSLGSLRCLTISGC 225 (377)
Q Consensus 198 ~l~~~~~~~~~----~~l~~l~~L~~L~l~~~ 225 (377)
++.+|..+... ..+.-+++|+.|+-...
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 65555433221 23344556666654443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.00066 Score=58.44 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=46.5
Q ss_pred CcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch-hhHHhcccCcccchhcc
Q 017094 168 QSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLI 246 (377)
Q Consensus 168 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l 246 (377)
.+.+.|+..||. +..+ .....|+.|+.|.++-|.++.. ..+..|++|++|.|..|.+.. .....+..+++|+.|.|
T Consensus 19 ~~vkKLNcwg~~-L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCC-ccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 345566666653 3322 2345666777777777766655 456667777777766654322 12234556666777766
Q ss_pred ccCCC
Q 017094 247 HSYDD 251 (377)
Q Consensus 247 ~~~~~ 251 (377)
..|+-
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 66553
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.93 E-value=0.018 Score=44.47 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=20.0
Q ss_pred hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEecc
Q 017094 89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLS 152 (377)
Q Consensus 89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~ 152 (377)
+|.++++|+.+.+... . ...-...+..+.+|+.+.+.++ +..++ ..+..+++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~~-~---~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-I---KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETST------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECCC-e---eEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 3455555555554421 1 1111223444445555555442 32222 233444445555543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.56 E-value=0.0088 Score=30.47 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=11.5
Q ss_pred cccEEEeCCCccccCCcCcC
Q 017094 122 FLRVLNLRESALEVCPRKMG 141 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~ 141 (377)
+|++|++++|.++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666655555544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.55 E-value=0.073 Score=41.02 Aligned_cols=102 Identities=10% Similarity=0.245 Sum_probs=54.4
Q ss_pred HhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCc-hhhcccc
Q 017094 116 CFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELP-KDIRYLV 192 (377)
Q Consensus 116 ~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~ 192 (377)
.|..+.+|+.+.+.. .+..++ ..+..+++|+.+.+.. .+..++. ++..+++|+.+.+.. .+..++ ..+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccc
Confidence 467778888888875 455443 4577888889888874 2555443 466677888888864 333333 3456688
Q ss_pred cccEeeecCcccccC-cccCCCCCCCCEEEccC
Q 017094 193 ILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISG 224 (377)
Q Consensus 193 ~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~ 224 (377)
+|+.+.+..+ +... ...+..+ +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8888888765 3322 2455665 788887764
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.0099 Score=48.94 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=41.4
Q ss_pred CCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCC
Q 017094 217 LRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF 296 (377)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 296 (377)
++.++-+++.+..+-...+..++.++.|.+.+|.... +.....+..-.++|+.|++++|..+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d------------------D~~L~~l~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD------------------DWCLERLGGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchh------------------hHHHHHhcccccchheeeccCCCee
Confidence 4556666655555555556666666666666655433 2222222233455555555555544
Q ss_pred CCC-CccCCCCccCceecccCc
Q 017094 297 MAL-PGSLKDLEALETLAIRGC 317 (377)
Q Consensus 297 ~~l-~~~~~~l~~L~~L~l~~~ 317 (377)
+.- -.++..+++|+.|.+.+-
T Consensus 165 T~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 165 TDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred chhHHHHHHHhhhhHHHHhcCc
Confidence 332 223445555555555543
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.0044 Score=50.98 Aligned_cols=87 Identities=18% Similarity=0.293 Sum_probs=58.9
Q ss_pred ccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cC-CCCccCceecccCcccCCCCC-cCCCCCCCcC
Q 017094 258 RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SL-KDLEALETLAIRGCPKLSSLP-EDMHHLTTLK 334 (377)
Q Consensus 258 ~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~-~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~ 334 (377)
.++.++-+++.....--..+ ..++.++.|.+.+|..++..-- .+ +..++|+.|+|++|+.+++-. ..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L--~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL--RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHH--hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 34555555543222222333 5778888999999887665311 11 368899999999999988543 4567899999
Q ss_pred eeeccCCCCccc
Q 017094 335 LLAIGGCPALSE 346 (377)
Q Consensus 335 ~L~l~~c~~l~~ 346 (377)
.|.+.+.|.+..
T Consensus 180 ~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 180 RLHLYDLPYVAN 191 (221)
T ss_pred HHHhcCchhhhc
Confidence 999998876554
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.18 E-value=0.062 Score=25.34 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=6.0
Q ss_pred cccEEEeCCCccccC
Q 017094 122 FLRVLNLRESALEVC 136 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l 136 (377)
+|+.|++++|.+..+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555554433
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.15 E-value=0.055 Score=27.45 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=9.7
Q ss_pred cccEEeccCccccccCchhh
Q 017094 169 SLQTLDLEGCLELEELPKDI 188 (377)
Q Consensus 169 ~L~~L~l~~~~~~~~~p~~l 188 (377)
+|++|++++| .+..+|..+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 3555666555 344555443
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.14 E-value=0.099 Score=27.73 Aligned_cols=18 Identities=22% Similarity=0.652 Sum_probs=15.1
Q ss_pred CCCcCeeeccCCCCcccc
Q 017094 330 LTTLKLLAIGGCPALSER 347 (377)
Q Consensus 330 l~~L~~L~l~~c~~l~~~ 347 (377)
+++|++|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 478899999999988875
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.66 E-value=0.0058 Score=58.40 Aligned_cols=84 Identities=21% Similarity=0.235 Sum_probs=37.1
Q ss_pred CcEEEEEecccccc---chhhhhcccCCceEEEeecCCchh-hHHHHHHHhhcc-CcccEEEeCCCccc-----cCCcCc
Q 017094 71 VRHLSFAAANALRN---DFSSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKS-QFLRVLNLRESALE-----VCPRKM 140 (377)
Q Consensus 71 l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~-~~L~~L~L~~~~~~-----~l~~~~ 140 (377)
+..+.+.++.+... .+...+...+.|..|++++|..+. ....+...+... ..+++|++..|.+. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 44555555544332 123445555666666666665441 111122222222 34455555555443 122333
Q ss_pred CCCCccceEeccCC
Q 017094 141 GNLKHMRYLDLSRN 154 (377)
Q Consensus 141 ~~l~~L~~L~l~~~ 154 (377)
....+++.++++.|
T Consensus 169 ~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 169 EKNEHLTELDLSLN 182 (478)
T ss_pred hcccchhHHHHHhc
Confidence 33445555555544
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.28 E-value=0.015 Score=55.56 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=18.3
Q ss_pred ceEEEeecCCch-hhHHHHHHHhhccCcccEEEeCCCccc
Q 017094 96 LRTIFFSTDDEK-TSQSFVESCFSKSQFLRVLNLRESALE 134 (377)
Q Consensus 96 L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~ 134 (377)
+..|.+.+|... .....+...+.-...|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 444444444333 223333444555555555555555543
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.12 E-value=0.04 Score=46.58 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=65.4
Q ss_pred hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCc
Q 017094 90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS 169 (377)
Q Consensus 90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~ 169 (377)
+......+.|+++.+.. ......++.+..|..|+++.+.+..+|..++....+..++.. ++..+..|.++++.++
T Consensus 38 i~~~kr~tvld~~s~r~----vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~-~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL----VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASH-KNNHSQQPKSQKKEPH 112 (326)
T ss_pred hhccceeeeehhhhhHH----HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhh-ccchhhCCccccccCC
Confidence 45567778888776532 233345667778888899988888888888888888888887 4578888888888999
Q ss_pred ccEEeccCccc
Q 017094 170 LQTLDLEGCLE 180 (377)
Q Consensus 170 L~~L~l~~~~~ 180 (377)
+++++..++..
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 99998887653
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.00 E-value=0.58 Score=24.62 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=7.9
Q ss_pred cccEEEeCCCccccCC
Q 017094 122 FLRVLNLRESALEVCP 137 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~ 137 (377)
+|+.|+|++|.+..+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00370 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 4455555555544444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.00 E-value=0.58 Score=24.62 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=7.9
Q ss_pred cccEEEeCCCccccCC
Q 017094 122 FLRVLNLRESALEVCP 137 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~ 137 (377)
+|+.|+|++|.+..+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00369 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 4455555555544444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.64 E-value=0.072 Score=45.06 Aligned_cols=63 Identities=19% Similarity=0.059 Sum_probs=31.3
Q ss_pred hcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCC
Q 017094 164 ICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRD 227 (377)
Q Consensus 164 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 227 (377)
+..++.|..|+++.+ .+..+|.+++....++++++..|.....|..++..+.++.++.-++..
T Consensus 61 ~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 334444555555442 344445555555555555555555444445555555555555554443
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.79 E-value=1.7 Score=22.23 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=7.7
Q ss_pred CCCCEEEccCCCCchh
Q 017094 215 GSLRCLTISGCRDLEH 230 (377)
Q Consensus 215 ~~L~~L~l~~~~~~~~ 230 (377)
++|++|++++|+....
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4566666666654333
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.13 E-value=4.6 Score=21.41 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=9.7
Q ss_pred cccEEEeCCCccccCCc
Q 017094 122 FLRVLNLRESALEVCPR 138 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~ 138 (377)
+|+.|++++|.+..+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666555553
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.19 E-value=12 Score=19.86 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=7.4
Q ss_pred CcccEEEeCCCccc
Q 017094 121 QFLRVLNLRESALE 134 (377)
Q Consensus 121 ~~L~~L~L~~~~~~ 134 (377)
.+|+.|+++.|.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.30 E-value=14 Score=35.65 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=32.8
Q ss_pred cccccccEeeecCcccccCc---ccCCCCCCCCEEEccCCCCchhhHHhccc--CcccchhccccCCCCc
Q 017094 189 RYLVILRVFALTTKQKSLQE---SGIRSLGSLRCLTISGCRDLEHLFEEIEQ--LSLLRTLLIHSYDDRK 253 (377)
Q Consensus 189 ~~l~~L~~L~l~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~ 253 (377)
.+.+.+..+++++|++.... .-....|+|+.|+|++|........++.+ ...|++|-+.+|+..+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34556666677777655331 22234567777777776322211122222 1245666666665443
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.11 E-value=14 Score=19.77 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=6.2
Q ss_pred cccEEEeCCCcc
Q 017094 122 FLRVLNLRESAL 133 (377)
Q Consensus 122 ~L~~L~L~~~~~ 133 (377)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.05 E-value=13 Score=35.87 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=39.1
Q ss_pred CCCcccEEeccCccc--cccCchhhcccccccEeeecCc--ccccCcccCCC--CCCCCEEEccCCCCch
Q 017094 166 ELQSLQTLDLEGCLE--LEELPKDIRYLVILRVFALTTK--QKSLQESGIRS--LGSLRCLTISGCRDLE 229 (377)
Q Consensus 166 ~l~~L~~L~l~~~~~--~~~~p~~l~~l~~L~~L~l~~~--~~~~~~~~l~~--l~~L~~L~l~~~~~~~ 229 (377)
+.+.+..+.+++|.. +..+...-...|+|+.|+|++| .+... ..+.+ ...|++|.+.||...+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCcccc
Confidence 567777888887642 2233333456788999999998 33322 22222 2348889999987543
No 89
>PF14162 YozD: YozD-like protein
Probab=35.85 E-value=52 Score=20.54 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHhCCCCcccc
Q 017094 14 DLEDIGMRYLKELLSRSFFQDLT 36 (377)
Q Consensus 14 ~~~~~~~~~~~~L~~~~l~~~~~ 36 (377)
..+++|+=++.+|+.|+.+-.-.
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcHH
Confidence 46899999999999999986643
Done!