Query 017094
Match_columns 377
No_of_seqs 217 out of 3245
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 6.5E-27 2.2E-31 236.3 17.8 245 93-342 393-715 (768)
2 3v47_A TOLL-like receptor 5B a 99.9 2.2E-26 7.6E-31 218.9 20.2 297 67-373 28-408 (455)
3 2id5_A Lingo-1, leucine rich r 99.9 2.6E-26 9E-31 219.8 18.4 297 66-373 29-333 (477)
4 4fcg_A Uncharacterized protein 99.9 1.5E-26 5E-31 210.5 12.9 222 93-340 80-310 (328)
5 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-26 4.8E-31 209.4 12.0 255 69-349 50-309 (313)
6 4eco_A Uncharacterized protein 99.9 4.3E-25 1.5E-29 218.4 21.3 290 69-373 249-600 (636)
7 3rgz_A Protein brassinosteroid 99.9 1.3E-25 4.6E-30 226.7 15.8 298 69-372 318-716 (768)
8 4fmz_A Internalin; leucine ric 99.9 1E-24 3.5E-29 200.1 20.2 278 69-374 66-347 (347)
9 4fcg_A Uncharacterized protein 99.9 1.3E-25 4.4E-30 204.3 12.9 222 69-317 81-311 (328)
10 4eco_A Uncharacterized protein 99.9 1.1E-25 3.6E-30 222.7 12.7 269 69-342 81-468 (636)
11 2z7x_B TOLL-like receptor 1, v 99.9 3.3E-24 1.1E-28 207.4 21.4 291 68-373 20-481 (520)
12 4ecn_A Leucine-rich repeat pro 99.9 1E-23 3.4E-28 213.0 24.0 289 69-373 491-840 (876)
13 3t6q_A CD180 antigen; protein- 99.9 3.8E-24 1.3E-28 210.8 19.5 223 118-342 275-511 (606)
14 3vq2_A TLR4, TOLL-like recepto 99.9 3.9E-24 1.3E-28 210.8 19.2 131 68-202 31-163 (606)
15 3v47_A TOLL-like receptor 5B a 99.9 2.1E-24 7.2E-29 205.3 16.2 271 94-374 30-385 (455)
16 4fmz_A Internalin; leucine ric 99.9 1.6E-23 5.4E-28 192.1 21.4 278 69-374 44-325 (347)
17 3o6n_A APL1; leucine-rich repe 99.9 6.4E-24 2.2E-28 197.9 19.0 284 69-373 45-352 (390)
18 3j0a_A TOLL-like receptor 5; m 99.9 6.2E-24 2.1E-28 216.7 20.0 270 67-341 22-348 (844)
19 2id5_A Lingo-1, leucine rich r 99.9 2.9E-24 9.8E-29 205.6 15.9 269 68-344 55-333 (477)
20 1ziw_A TOLL-like receptor 3; i 99.9 8.5E-24 2.9E-28 211.1 19.1 294 66-371 22-364 (680)
21 4ecn_A Leucine-rich repeat pro 99.9 5.8E-24 2E-28 214.7 17.5 262 69-341 448-763 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-23 9.4E-28 202.8 21.5 291 67-373 50-510 (562)
23 3t6q_A CD180 antigen; protein- 99.9 4.1E-24 1.4E-28 210.6 15.7 266 69-342 278-558 (606)
24 2z63_A TOLL-like receptor 4, v 99.9 1.3E-23 4.4E-28 205.4 18.8 109 258-373 422-531 (570)
25 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-24 4.6E-29 196.3 10.6 249 94-371 50-302 (313)
26 3o6n_A APL1; leucine-rich repe 99.9 1.4E-23 4.8E-28 195.6 17.8 257 69-343 69-351 (390)
27 1xku_A Decorin; proteoglycan, 99.9 3.8E-23 1.3E-27 188.3 19.9 269 69-370 52-329 (330)
28 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-23 4.5E-28 207.0 18.1 241 90-341 281-531 (606)
29 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-23 9.8E-28 189.3 18.0 279 70-370 34-330 (332)
30 3oja_B Anopheles plasmodium-re 99.9 3.7E-23 1.3E-27 203.2 18.8 280 69-372 51-357 (597)
31 2z81_A CD282 antigen, TOLL-lik 99.9 2E-23 6.9E-28 203.2 16.0 154 68-225 25-182 (549)
32 2z81_A CD282 antigen, TOLL-lik 99.9 7.7E-23 2.6E-27 199.1 19.6 119 68-190 49-170 (549)
33 3oja_B Anopheles plasmodium-re 99.9 4.3E-23 1.5E-27 202.8 16.7 257 69-343 75-357 (597)
34 1o6v_A Internalin A; bacterial 99.9 3.9E-22 1.3E-26 190.2 22.2 275 70-373 47-366 (466)
35 1xku_A Decorin; proteoglycan, 99.9 2.9E-22 9.8E-27 182.5 19.7 246 121-373 52-306 (330)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-21 4.7E-26 185.5 23.5 200 69-294 42-244 (457)
37 1o6v_A Internalin A; bacterial 99.9 8.4E-22 2.9E-26 187.9 21.3 276 69-374 68-389 (466)
38 2z63_A TOLL-like receptor 4, v 99.9 1.5E-22 5.2E-27 197.8 16.3 223 119-345 280-532 (570)
39 2z7x_B TOLL-like receptor 1, v 99.9 7.7E-22 2.6E-26 190.8 20.9 150 189-344 321-481 (520)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.8E-22 1.6E-26 194.0 19.2 262 69-344 76-510 (562)
41 3j0a_A TOLL-like receptor 5; m 99.9 8.9E-22 3E-26 200.8 21.8 270 68-342 47-373 (844)
42 2ft3_A Biglycan; proteoglycan, 99.9 4.2E-22 1.5E-26 181.5 17.3 265 95-373 34-307 (332)
43 2z66_A Variable lymphocyte rec 99.9 5.1E-22 1.7E-26 178.9 17.0 225 94-343 28-260 (306)
44 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-21 4.7E-26 185.5 20.0 227 69-324 64-303 (457)
45 1ziw_A TOLL-like receptor 3; i 99.9 3.4E-21 1.1E-25 192.3 21.6 267 69-341 49-363 (680)
46 2z66_A Variable lymphocyte rec 99.9 5E-22 1.7E-26 178.9 13.8 231 67-321 26-262 (306)
47 3zyi_A Leucine-rich repeat-con 99.9 2.3E-21 7.9E-26 184.2 18.7 218 121-342 75-301 (452)
48 3zyj_A Leucine-rich repeat-con 99.9 3.4E-21 1.2E-25 182.3 18.4 219 121-343 64-291 (440)
49 2z80_A TOLL-like receptor 2, v 99.9 7E-22 2.4E-26 181.6 12.6 250 69-342 52-312 (353)
50 2z80_A TOLL-like receptor 2, v 99.9 8.6E-22 3E-26 181.0 13.0 245 121-373 52-314 (353)
51 3zyi_A Leucine-rich repeat-con 99.9 2.5E-21 8.7E-26 183.9 16.4 226 67-318 73-301 (452)
52 3zyj_A Leucine-rich repeat-con 99.9 3.2E-21 1.1E-25 182.5 16.1 227 67-319 62-291 (440)
53 1wwl_A Monocyte differentiatio 99.9 8.3E-22 2.8E-26 178.0 9.3 250 90-374 39-310 (312)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-22 3.7E-27 184.2 2.9 244 88-347 28-278 (317)
55 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-20 7.9E-25 166.3 16.9 220 97-344 14-238 (285)
56 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-20 4E-25 170.8 14.3 231 96-344 12-250 (317)
57 4g8a_A TOLL-like receptor 4; l 99.8 2.7E-20 9.1E-25 184.0 17.1 137 66-207 49-188 (635)
58 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-20 5.4E-25 167.3 13.8 206 93-321 31-239 (285)
59 1z7x_W Ribonuclease inhibitor; 99.8 3.3E-22 1.1E-26 190.3 1.1 221 70-294 29-295 (461)
60 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-21 4.1E-26 186.5 4.5 271 70-342 86-409 (461)
61 3oja_A Leucine-rich immune mol 99.8 3.9E-21 1.3E-25 183.9 6.5 229 95-339 35-270 (487)
62 1wwl_A Monocyte differentiatio 99.8 4.6E-21 1.6E-25 173.1 6.6 229 118-374 40-288 (312)
63 1p9a_G Platelet glycoprotein I 99.8 1.7E-19 5.9E-24 160.9 16.6 102 122-226 32-135 (290)
64 3oja_A Leucine-rich immune mol 99.8 6.5E-20 2.2E-24 175.5 14.8 218 112-344 25-250 (487)
65 3g06_A SSPH2 (leucine-rich rep 99.8 4.8E-19 1.7E-23 173.2 21.3 234 69-343 61-296 (622)
66 1jl5_A Outer protein YOPM; leu 99.8 5.7E-19 1.9E-23 167.4 21.0 177 67-267 89-267 (454)
67 2ast_B S-phase kinase-associat 99.8 1.5E-20 5.1E-25 171.5 8.9 215 95-317 48-282 (336)
68 3g06_A SSPH2 (leucine-rich rep 99.8 8.1E-19 2.8E-23 171.6 21.7 255 70-373 41-297 (622)
69 2z62_A TOLL-like receptor 4, v 99.8 2.5E-19 8.7E-24 158.7 14.7 128 122-250 29-160 (276)
70 2o6q_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 153.8 18.5 195 123-342 18-216 (270)
71 4g8a_A TOLL-like receptor 4; l 99.8 1.2E-18 4.1E-23 172.1 20.4 108 68-179 75-184 (635)
72 1jl5_A Outer protein YOPM; leu 99.8 1.2E-18 4.1E-23 165.2 19.0 237 69-342 111-368 (454)
73 2ca6_A RAN GTPase-activating p 99.8 4.8E-21 1.6E-25 178.2 2.4 235 87-321 25-317 (386)
74 1h6u_A Internalin H; cell adhe 99.8 6.1E-19 2.1E-23 158.8 15.4 197 90-324 37-233 (308)
75 4glp_A Monocyte differentiatio 99.8 1.7E-18 5.8E-23 156.1 18.2 228 92-342 62-305 (310)
76 2xwt_C Thyrotropin receptor; s 99.8 4.6E-19 1.6E-23 153.7 13.1 199 121-344 31-239 (239)
77 3rfs_A Internalin B, repeat mo 99.8 8.7E-19 3E-23 154.9 14.2 208 90-332 37-247 (272)
78 2ast_B S-phase kinase-associat 99.8 4.9E-20 1.7E-24 168.0 5.8 244 70-328 48-314 (336)
79 2ca6_A RAN GTPase-activating p 99.8 3.8E-20 1.3E-24 172.2 4.7 247 69-316 32-339 (386)
80 3ogk_B Coronatine-insensitive 99.8 4.2E-20 1.4E-24 181.4 4.8 39 303-342 484-524 (592)
81 2z62_A TOLL-like receptor 4, v 99.8 9E-19 3.1E-23 155.2 12.3 202 94-320 28-237 (276)
82 3rfs_A Internalin B, repeat mo 99.8 1E-18 3.4E-23 154.5 10.9 203 69-308 41-247 (272)
83 1h6u_A Internalin H; cell adhe 99.8 5.2E-18 1.8E-22 152.7 14.1 164 70-249 42-205 (308)
84 2o6q_A Variable lymphocyte rec 99.8 1.4E-17 4.8E-22 147.0 15.1 197 95-320 17-218 (270)
85 1p9a_G Platelet glycoprotein I 99.8 6.6E-18 2.3E-22 150.6 13.0 129 118-250 7-135 (290)
86 3goz_A Leucine-rich repeat-con 99.7 7.6E-19 2.6E-23 161.9 6.7 241 87-342 15-295 (362)
87 4glp_A Monocyte differentiatio 99.7 3.8E-17 1.3E-21 147.2 15.5 228 121-375 64-309 (310)
88 3ogk_B Coronatine-insensitive 99.7 1.6E-18 5.4E-23 170.2 6.2 158 184-342 285-474 (592)
89 2xwt_C Thyrotropin receptor; s 99.7 1.2E-17 4E-22 144.8 9.5 198 94-319 31-238 (239)
90 3m19_A Variable lymphocyte rec 99.7 2E-16 6.8E-21 138.0 15.6 176 121-319 14-191 (251)
91 4ay9_X Follicle-stimulating ho 99.7 8.7E-17 3E-21 147.4 13.9 215 121-340 30-255 (350)
92 2p1m_B Transport inhibitor res 99.7 6.7E-19 2.3E-23 172.8 -0.5 109 69-178 105-221 (594)
93 3goz_A Leucine-rich repeat-con 99.7 6.8E-18 2.3E-22 155.5 5.7 248 111-374 12-298 (362)
94 1h6t_A Internalin B; cell adhe 99.7 2E-16 6.7E-21 141.1 13.4 168 119-318 44-211 (291)
95 3m19_A Variable lymphocyte rec 99.7 5E-16 1.7E-20 135.5 15.7 176 144-343 14-191 (251)
96 2p1m_B Transport inhibitor res 99.7 7.8E-18 2.7E-22 165.2 3.7 151 69-221 66-241 (594)
97 4ay9_X Follicle-stimulating ho 99.7 1.2E-15 4.1E-20 139.8 15.8 217 124-349 12-241 (350)
98 1m9s_A Internalin B; cell inva 99.7 8.1E-16 2.8E-20 150.2 14.4 169 119-319 41-209 (605)
99 3cvr_A Invasion plasmid antige 99.7 8.4E-16 2.9E-20 148.6 14.3 184 122-325 60-248 (571)
100 4ezg_A Putative uncharacterize 99.6 5.1E-16 1.8E-20 130.2 10.3 151 141-318 41-192 (197)
101 1h6t_A Internalin B; cell adhe 99.6 2.3E-15 7.9E-20 134.2 13.1 167 70-252 47-213 (291)
102 2o6s_A Variable lymphocyte rec 99.6 2.8E-15 9.5E-20 126.8 12.9 178 124-332 10-190 (208)
103 4ezg_A Putative uncharacterize 99.6 4.2E-15 1.5E-19 124.6 13.3 147 70-226 45-192 (197)
104 2o6s_A Variable lymphocyte rec 99.6 1.8E-15 6E-20 128.1 10.2 128 121-250 28-159 (208)
105 1m9s_A Internalin B; cell inva 99.6 4.5E-15 1.5E-19 145.0 12.8 169 69-253 43-211 (605)
106 3cvr_A Invasion plasmid antige 99.6 1.1E-15 3.8E-20 147.8 8.3 185 95-306 60-253 (571)
107 1dce_A Protein (RAB geranylger 99.6 2.8E-17 9.6E-22 159.5 -4.5 194 118-337 346-566 (567)
108 4b8c_D Glucose-repressible alc 99.6 2.8E-15 9.6E-20 149.8 9.0 195 69-267 173-369 (727)
109 1xeu_A Internalin C; cellular 99.6 4.3E-15 1.5E-19 130.4 8.9 162 124-318 22-183 (263)
110 2ell_A Acidic leucine-rich nuc 99.5 2.6E-14 8.8E-19 116.5 9.8 133 118-252 21-160 (168)
111 1xeu_A Internalin C; cellular 99.5 3.6E-14 1.2E-18 124.4 10.6 150 89-252 36-185 (263)
112 2v9t_B SLIT homolog 2 protein 99.5 9.9E-14 3.4E-18 118.3 12.4 130 121-251 32-164 (220)
113 2je0_A Acidic leucine-rich nuc 99.5 3.2E-14 1.1E-18 113.5 8.4 128 118-247 14-148 (149)
114 2v9t_B SLIT homolog 2 protein 99.5 1.5E-13 5E-18 117.2 12.4 99 147-249 14-114 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 1.7E-13 5.8E-18 116.8 12.2 130 121-251 32-165 (220)
116 2xot_A Amphoterin-induced prot 99.5 7E-14 2.4E-18 128.5 10.4 127 121-250 39-174 (361)
117 2v70_A SLIT-2, SLIT homolog 2 99.5 2E-13 6.7E-18 116.5 12.0 149 147-319 14-165 (220)
118 3e6j_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 116.0 13.0 128 121-250 40-170 (229)
119 1dce_A Protein (RAB geranylger 99.5 1.4E-15 4.7E-20 147.7 -2.7 103 145-251 442-545 (567)
120 3e6j_A Variable lymphocyte rec 99.5 1.6E-13 5.6E-18 117.7 10.5 130 94-228 40-172 (229)
121 2ell_A Acidic leucine-rich nuc 99.5 7.4E-14 2.5E-18 113.8 7.9 132 92-227 22-159 (168)
122 2xot_A Amphoterin-induced prot 99.5 1.4E-13 4.8E-18 126.5 9.6 173 72-252 21-202 (361)
123 2je0_A Acidic leucine-rich nuc 99.4 1E-13 3.5E-18 110.5 4.9 128 92-223 15-148 (149)
124 1w8a_A SLIT protein; signaling 99.4 7.3E-13 2.5E-17 110.4 9.7 126 124-252 11-139 (192)
125 1a9n_A U2A', U2A'; complex (nu 99.4 4.1E-13 1.4E-17 110.3 6.9 129 90-226 15-151 (176)
126 1a9n_A U2A', U2A'; complex (nu 99.4 4.9E-13 1.7E-17 109.8 7.0 132 117-252 15-153 (176)
127 4b8c_D Glucose-repressible alc 99.4 6.5E-14 2.2E-18 140.0 1.4 192 94-317 173-369 (727)
128 2wfh_A SLIT homolog 2 protein 99.4 3.8E-12 1.3E-16 106.1 10.7 125 124-251 13-138 (193)
129 1ds9_A Outer arm dynein; leuci 99.3 1.5E-14 5.1E-19 121.3 -4.9 128 114-245 41-180 (198)
130 3sb4_A Hypothetical leucine ri 99.3 9.2E-12 3.1E-16 112.8 11.8 80 256-341 225-307 (329)
131 1w8a_A SLIT protein; signaling 99.3 6.7E-12 2.3E-16 104.5 8.0 126 97-228 11-139 (192)
132 2wfh_A SLIT homolog 2 protein 99.3 3.3E-11 1.1E-15 100.4 10.9 106 121-227 31-138 (193)
133 2o6r_A Variable lymphocyte rec 99.2 3.8E-11 1.3E-15 98.5 10.9 104 121-226 28-135 (177)
134 1ds9_A Outer arm dynein; leuci 99.2 4E-13 1.4E-17 112.5 -1.3 146 68-221 22-180 (198)
135 2o6r_A Variable lymphocyte rec 99.1 4.4E-10 1.5E-14 92.1 11.5 125 123-252 9-137 (177)
136 3sb4_A Hypothetical leucine ri 99.1 1.1E-10 3.9E-15 105.6 8.7 101 214-338 225-328 (329)
137 3g39_A Variable lymphocyte rec 99.1 4.5E-10 1.5E-14 91.4 10.8 102 122-227 10-114 (170)
138 2r9u_A Variable lymphocyte rec 99.1 4.8E-10 1.6E-14 91.6 10.8 100 124-227 15-117 (174)
139 4fdw_A Leucine rich hypothetic 99.0 2.6E-09 9E-14 99.1 14.0 149 89-250 131-282 (401)
140 3un9_A NLR family member X1; l 99.0 2.3E-10 7.8E-15 105.2 4.4 160 93-252 71-252 (372)
141 3g39_A Variable lymphocyte rec 98.9 2.8E-09 9.5E-14 86.7 8.0 105 145-252 10-115 (170)
142 2r9u_A Variable lymphocyte rec 98.9 3E-09 1E-13 86.9 8.0 104 146-252 14-118 (174)
143 3un9_A NLR family member X1; l 98.9 5.8E-10 2E-14 102.5 3.9 167 69-237 72-261 (372)
144 4fdw_A Leucine rich hypothetic 98.9 1.6E-07 5.5E-12 87.0 18.9 233 90-341 109-355 (401)
145 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.9E-13 92.4 10.5 102 125-227 12-115 (347)
146 2ra8_A Uncharacterized protein 98.8 1.6E-08 5.4E-13 92.3 8.2 107 141-250 169-290 (362)
147 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.9E-13 93.2 6.8 182 69-252 107-320 (362)
148 2ifg_A High affinity nerve gro 98.5 1.6E-07 5.5E-12 85.3 7.3 87 117-205 27-116 (347)
149 4fs7_A Uncharacterized protein 98.5 1.9E-06 6.7E-11 79.6 14.2 129 87-224 64-217 (394)
150 4gt6_A Cell surface protein; l 98.4 1.8E-06 6E-11 80.0 12.6 80 256-342 287-368 (394)
151 1io0_A Tropomodulin; LRR prote 98.4 2.9E-07 1E-11 75.7 5.3 68 87-154 29-103 (185)
152 4fs7_A Uncharacterized protein 98.4 1.9E-06 6.5E-11 79.7 11.0 214 115-340 156-375 (394)
153 3e4g_A ATP synthase subunit S, 98.2 2.8E-07 9.4E-12 74.3 2.1 88 257-347 61-155 (176)
154 1io0_A Tropomodulin; LRR prote 98.2 6.9E-07 2.4E-11 73.4 3.6 118 109-226 24-162 (185)
155 3e4g_A ATP synthase subunit S, 98.2 2.3E-06 7.7E-11 69.0 6.2 17 211-227 81-97 (176)
156 4gt6_A Cell surface protein; l 98.1 7.4E-05 2.5E-09 68.9 16.2 76 257-339 265-342 (394)
157 3rw6_A Nuclear RNA export fact 98.1 1.9E-06 6.6E-11 74.6 4.7 80 117-198 166-257 (267)
158 4h09_A Hypothetical leucine ri 97.8 0.00068 2.3E-08 62.0 16.3 34 303-338 306-340 (379)
159 3rw6_A Nuclear RNA export fact 97.5 7.3E-05 2.5E-09 64.7 4.9 81 165-246 167-258 (267)
160 4h09_A Hypothetical leucine ri 97.4 0.0023 7.8E-08 58.4 14.2 78 256-339 239-318 (379)
161 2a5y_B CED-4; apoptosis; HET: 97.1 0.00016 5.5E-09 69.8 2.4 57 1-62 411-469 (549)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0019 6.5E-08 52.9 5.3 68 87-154 34-108 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.0 0.0094 3.2E-07 48.7 5.6 110 69-178 41-167 (197)
164 3rfe_A Platelet glycoprotein I 93.7 0.14 4.9E-06 38.6 6.1 52 125-179 12-66 (130)
165 3rfe_A Platelet glycoprotein I 88.3 0.41 1.4E-05 36.0 3.7 52 172-226 12-66 (130)
166 3sfz_A APAF-1, apoptotic pepti 81.2 1.3 4.5E-05 46.7 4.8 40 16-59 408-447 (1249)
167 1z6t_A APAF-1, apoptotic prote 71.9 3.6 0.00012 39.5 4.7 40 17-60 409-448 (591)
168 1vt4_I APAF-1 related killer D 55.0 7.8 0.00027 40.1 3.5 36 17-58 402-437 (1221)
169 2lz0_A Uncharacterized protein 21.0 97 0.0033 21.5 3.6 37 163-201 15-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=6.5e-27 Score=236.34 Aligned_cols=245 Identities=18% Similarity=0.171 Sum_probs=176.0
Q ss_pred cCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094 93 LGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171 (377)
Q Consensus 93 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 171 (377)
+++|+.|++++|... ..++..+..+++|++|++++|.+. .+|..++.+++|++|++++|.....+|..+..+++|+
T Consensus 393 ~~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 393 KNTLQELYLQNNGFT---GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp TCCCCEEECCSSEEE---EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cCCccEEECCCCccc---cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 445555555554332 123345666777777777777765 5566677777777777776655556676677777777
Q ss_pred EEeccCccccccCchhhcccccccEeeecCcccc-cCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKS-LQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD 250 (377)
Q Consensus 172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 250 (377)
+|++++|...+.+|..+..+++|++|++++|.+. ..|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|.
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 7777776555566777777777777777777766 345566777777777777777666666677777777777776664
Q ss_pred CCc----------------------------------------------------------------------------c
Q 017094 251 DRK----------------------------------------------------------------------------N 254 (377)
Q Consensus 251 ~~~----------------------------------------------------------------------------~ 254 (377)
... .
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 321 1
Q ss_pred CCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcC
Q 017094 255 TRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLK 334 (377)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 334 (377)
..++|+.|+++++.....+|..+ ..+++|+.|++++|...+.+|..++.+++|++|++++|.....+|..+..+++|+
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred ccccccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 12468888998887777888888 8889999999999887778999999999999999999877778888888899999
Q ss_pred eeeccCCC
Q 017094 335 LLAIGGCP 342 (377)
Q Consensus 335 ~L~l~~c~ 342 (377)
+|++++|+
T Consensus 708 ~L~ls~N~ 715 (768)
T 3rgz_A 708 EIDLSNNN 715 (768)
T ss_dssp EEECCSSE
T ss_pred EEECcCCc
Confidence 99887763
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.2e-26 Score=218.91 Aligned_cols=297 Identities=14% Similarity=0.064 Sum_probs=206.9
Q ss_pred CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCc
Q 017094 67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKH 145 (377)
Q Consensus 67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~ 145 (377)
.++++++|++.++.+.... +..+..+++|++|++++|... ....+..+..+++|++|++++|.+..+ |..++.+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCC-hhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 5578999999998877642 567899999999999988542 122234588899999999999998865 778999999
Q ss_pred cceEeccCCCcccccChh--hcCCCcccEEeccCccccccCchh-hcccccccEeeecCcccccCc-ccCC---------
Q 017094 146 MRYLDLSRNSKIKKLPKS--ICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFALTTKQKSLQE-SGIR--------- 212 (377)
Q Consensus 146 L~~L~l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~~~-~~l~--------- 212 (377)
|++|++++|......|.. +..+++|++|++++|......|.. +..+++|++|++++|.+.... ..+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999999987544444444 888999999999998554444655 789999999999999877542 2222
Q ss_pred -------------------------CCCCCCEEEccCCCCchhhHHhcccC-----------------------------
Q 017094 213 -------------------------SLGSLRCLTISGCRDLEHLFEEIEQL----------------------------- 238 (377)
Q Consensus 213 -------------------------~l~~L~~L~l~~~~~~~~~~~~l~~l----------------------------- 238 (377)
.+++|+.|++++|......+..+...
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 34678889998887766555544322
Q ss_pred ----------cccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCcc
Q 017094 239 ----------SLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGS 302 (377)
Q Consensus 239 ----------~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~ 302 (377)
++|+.|++++|.... ...++|++|+++++......|..+ ..+++|++|++++|......+..
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGGG
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh--cCcccCCEEECCCCccCCcChhH
Confidence 345555555554332 223467777777665443334444 56677777777776544444566
Q ss_pred CCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 303 LKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 303 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
+..+++|++|++++|......|..+..+++|++|++++|. ++..+.. .+..+..++.+.+.++++.
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDG----IFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTT----TTTTCTTCCEEECCSSCBC
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHh----HhccCCcccEEEccCCCcc
Confidence 6777778888887775444446667777888888887763 3333222 2345677777778777765
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=219.77 Aligned_cols=297 Identities=17% Similarity=0.165 Sum_probs=230.2
Q ss_pred CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCC
Q 017094 66 SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLK 144 (377)
Q Consensus 66 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~ 144 (377)
..++.++.|++.++.+.... +..|..+++|++|++++|... ...+..+..+++|++|+|++|.+..+|. .+..++
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 35678999999998887653 557899999999999998654 2334568899999999999999998875 478999
Q ss_pred ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEcc
Q 017094 145 HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTIS 223 (377)
Q Consensus 145 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~ 223 (377)
+|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.++..+ ..+..+++|+.|+++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 9999999987555556778889999999999998655555677899999999999999988765 458899999999999
Q ss_pred CCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCC
Q 017094 224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFM 297 (377)
Q Consensus 224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 297 (377)
+|......+..+..+++|+.|++++|.... ....+|++|+++++. +..+|...+ ..+++|+.|++++|....
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAV-RHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHH-TTCTTCCEEECCSSCCCE
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHh-cCccccCeeECCCCcCCc
Confidence 988766555678889999999999887655 223389999999874 556665433 678899999999887544
Q ss_pred CCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 298 ALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 298 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
..+..+..+++|++|++++|......|..+..+++|+.|++++|. ++..+.. .+..+..+..+.+.++++.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEES----VFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGG----GBSCGGGCCEEECCSSCEE
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHh----HcCCCcccCEEEccCCCcc
Confidence 445567788889999998886555556777888889999988883 4433221 2344567777777777664
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.5e-26 Score=210.54 Aligned_cols=222 Identities=25% Similarity=0.354 Sum_probs=156.5
Q ss_pred cCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccE
Q 017094 93 LGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQT 172 (377)
Q Consensus 93 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 172 (377)
.++++.|+++++.+. .++..+..+++|++|++++|.+..+|..++.+++|++|++++| .+..+|..++.+++|++
T Consensus 80 ~~~l~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCch----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCE
Confidence 366777777766543 2333455677777777777777777777777777777777765 44566777777777777
Q ss_pred EeccCccccccCchhhcc---------cccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccch
Q 017094 173 LDLEGCLELEELPKDIRY---------LVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRT 243 (377)
Q Consensus 173 L~l~~~~~~~~~p~~l~~---------l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 243 (377)
|++++|...+.+|..+.. +++|++|++++|.++..|..++.+++|++|++++|... .++..++.+++|+.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence 777776666666665543 77777777777777666666777777777777776543 34445666666666
Q ss_pred hccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCC
Q 017094 244 LLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSL 323 (377)
Q Consensus 244 L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 323 (377)
|++++|... ..+|..+ ..+++|++|++++|.....+|..+..+++|++|++++|..++.+
T Consensus 234 L~Ls~n~~~------------------~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 234 LDLRGCTAL------------------RNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp EECTTCTTC------------------CBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred EECcCCcch------------------hhhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 666655433 3566666 67788888888888888888888888888888888888888888
Q ss_pred CcCCCCCCCcCeeeccC
Q 017094 324 PEDMHHLTTLKLLAIGG 340 (377)
Q Consensus 324 ~~~l~~l~~L~~L~l~~ 340 (377)
|..+.++++|+.+++..
T Consensus 294 P~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPP 310 (328)
T ss_dssp CGGGGGSCTTCEEECCG
T ss_pred cHHHhhccCceEEeCCH
Confidence 88888888888887764
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.4e-26 Score=209.38 Aligned_cols=255 Identities=16% Similarity=0.189 Sum_probs=200.6
Q ss_pred CCCcEEEEEeccccc-cchhhhhcccCCceEEEeec-CCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCcCCCCc
Q 017094 69 KRVRHLSFAAANALR-NDFSSLLSYLGRLRTIFFST-DDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKH 145 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~ 145 (377)
.++++|.+.++.+.. ..++..+..+++|++|++++ +... ..++..+..+++|++|++++|.+. .+|..+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc---ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 578888888877664 13566788888999999884 5432 234456788888999999888887 77888888889
Q ss_pred cceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccc-cccEeeecCcccc-cCcccCCCCCCCCEEEcc
Q 017094 146 MRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLV-ILRVFALTTKQKS-LQESGIRSLGSLRCLTIS 223 (377)
Q Consensus 146 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~ 223 (377)
|++|++++|.....+|..+..+++|++|++++|...+.+|..+..++ +|++|++++|.+. ..+..+..++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999987755447888888888899999988765557888888887 8889999888887 4556677776 8888888
Q ss_pred CCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccC
Q 017094 224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSL 303 (377)
Q Consensus 224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 303 (377)
+|......+..+..+++|+.|++++|.... ..+. + ..+++|++|++++|...+.+|.++
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------~~~~-~--~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAF------------------DLGK-V--GLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECC------------------BGGG-C--CCCTTCCEEECCSSCCEECCCGGG
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceee------------------ecCc-c--cccCCCCEEECcCCcccCcCChHH
Confidence 887666667777888888888887775432 2332 3 677999999999988766899999
Q ss_pred CCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCC
Q 017094 304 KDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCK 349 (377)
Q Consensus 304 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 349 (377)
..+++|++|++++|.....+|.. ..+++|+.+++.+|+.+...+.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 99999999999999777688875 8899999999999998776543
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=4.3e-25 Score=218.36 Aligned_cols=290 Identities=13% Similarity=0.131 Sum_probs=195.3
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCC-chhhHHHHHHHhhcc------CcccEEEeCCCccccCCc--C
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDD-EKTSQSFVESCFSKS------QFLRVLNLRESALEVCPR--K 139 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~------~~L~~L~L~~~~~~~l~~--~ 139 (377)
+++++|.+.++.+.. .+|..+.++++|++|++++|. +. ...++..+..+ ++|++|++++|.+..+|. .
T Consensus 249 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~--~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 249 KDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGIS--GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp TTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSC--HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred CCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCc--cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 589999999887655 357789999999999999986 43 11345555554 899999999999999998 8
Q ss_pred cCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccc-ccEeeecCcccccCcccCCCCC--C
Q 017094 140 MGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVI-LRVFALTTKQKSLQESGIRSLG--S 216 (377)
Q Consensus 140 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~l~~l~--~ 216 (377)
++.+++|++|++++|...+.+| .++.+++|++|++++| .+..+|..+..+++ |++|++++|.++..|..+..+. +
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 9999999999999875444888 7888899999999887 45588888888888 8888888888876665555433 6
Q ss_pred CCEEEccCCCCchhhHHhcc-------cCcccchhccccCCCCccC------CC--------------------------
Q 017094 217 LRCLTISGCRDLEHLFEEIE-------QLSLLRTLLIHSYDDRKNT------RP-------------------------- 257 (377)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~------~~-------------------------- 257 (377)
|+.|++++|......|..+. .+++|+.|++++|.....+ .+
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 66666666665444444444 4444555555444333200 12
Q ss_pred -----ccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceeccc------CcccCCCCCcC
Q 017094 258 -----RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIR------GCPKLSSLPED 326 (377)
Q Consensus 258 -----~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~------~~~~~~~~~~~ 326 (377)
+|++|+++++.. ..+|..+....+++|++|++++|... .+|..+..+++|++|+++ +|...+.+|..
T Consensus 484 ~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCC-CBCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcC-CccChhhhhccCCCcCEEECCCCCCC-CcChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 566666666533 35665551126667777777766533 366666667777777773 34445566666
Q ss_pred CCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 327 MHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 327 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
+..+++|++|++++|.- +.++.. + ...+..+.+.++++.
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~-----~--~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEK-----I--TPNISVLDIKDNPNI 600 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSC-----C--CTTCCEEECCSCTTC
T ss_pred HhcCCCCCEEECCCCcC-CccCHh-----H--hCcCCEEECcCCCCc
Confidence 66777777777777654 443332 1 145666666666554
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.3e-25 Score=226.74 Aligned_cols=298 Identities=16% Similarity=0.169 Sum_probs=214.8
Q ss_pred CCCcEEEEEeccccccchh-hhhcccCCceEEEeecCCchh-hHHHH---------------------HHHhhc--cCcc
Q 017094 69 KRVRHLSFAAANALRNDFS-SLLSYLGRLRTIFFSTDDEKT-SQSFV---------------------ESCFSK--SQFL 123 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~---------------------~~~~~~--~~~L 123 (377)
+++++|.+.++.+... ++ ..+..+++|++|++++|.... ....+ +..+.. +++|
T Consensus 318 ~~L~~L~L~~n~l~~~-ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 318 SLLESLALSSNNFSGE-LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp TTCCEEECCSSEEEEE-CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCccEEECCCCcccCc-CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 4677777777655421 22 236677777777777765431 11111 011111 4567
Q ss_pred cEEEeCCCccc-cCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCc
Q 017094 124 RVLNLRESALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTK 202 (377)
Q Consensus 124 ~~L~L~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 202 (377)
++|++++|.+. .+|..+..+++|++|++++|.....+|..++.+++|++|++++|...+.+|..+..+++|+.|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 77777777765 56777788888888888877555577777888888888888887666678888888888888888888
Q ss_pred ccc-cCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccch
Q 017094 203 QKS-LQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQ 275 (377)
Q Consensus 203 ~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~ 275 (377)
.+. ..|..+..+++|+.|++++|+....+|..++.+++|+.|++++|.... ...++|+.|+++++.....+|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 887 446678888888899988888777788888888899999998887653 3356889999988876656665
Q ss_pred hhhh--------------------------------------------------------------------cCCCCccE
Q 017094 276 WLLQ--------------------------------------------------------------------CCTDTLHT 287 (377)
Q Consensus 276 ~~~~--------------------------------------------------------------------~~~~~L~~ 287 (377)
+++. ..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 4421 12467889
Q ss_pred EeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEe
Q 017094 288 LVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIEL 367 (377)
Q Consensus 288 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~ 367 (377)
|++++|...+.+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.--...+.. +..+..+..+.+
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-----l~~l~~L~~L~l 711 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-----MSALTMLTEIDL 711 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-----GGGCCCCSEEEC
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-----HhCCCCCCEEEC
Confidence 999998877789999999999999999999877789999999999999999998644333322 344556666666
Q ss_pred CCCcc
Q 017094 368 DDEII 372 (377)
Q Consensus 368 ~~~~~ 372 (377)
.++.+
T Consensus 712 s~N~l 716 (768)
T 3rgz_A 712 SNNNL 716 (768)
T ss_dssp CSSEE
T ss_pred cCCcc
Confidence 55543
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1e-24 Score=200.09 Aligned_cols=278 Identities=18% Similarity=0.216 Sum_probs=169.9
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
+++++|.+.++.+.... . +..+++|++|++++|..... ..+..+++|++|++++|.+..++. +..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDIS--P-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCccEEEccCCccccch--h-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 35666666655544432 1 55666666666666544321 135566666666666666655544 556666666
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL 228 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 228 (377)
|++++|.....++. +..+++|++|++++| .+..++. +..+++|+.|++++|.+...+. +..+++|+.+++++|...
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC
Confidence 66665544444333 566666666666665 3333333 5666677777777766665533 666677777777766543
Q ss_pred hhhHHhcccCcccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCC
Q 017094 229 EHLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLK 304 (377)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~ 304 (377)
...+ +..+++|+.|++++|.... ...++|++|+++++. +..++ .+ ..+++|++|++++|. +..++ .+.
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~--~~l~~L~~L~l~~n~-l~~~~-~~~ 284 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDIN-AV--KDLTKLKMLNVGSNQ-ISDIS-VLN 284 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCG-GG--TTCTTCCEEECCSSC-CCCCG-GGG
T ss_pred CCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCCh-hH--hcCCCcCEEEccCCc-cCCCh-hhc
Confidence 3222 6677778888887776554 234678888887763 33443 33 677888888888774 44443 467
Q ss_pred CCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094 305 DLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS 374 (377)
Q Consensus 305 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (377)
.+++|++|++++|......+..+..+++|+.|++++|+ ++..+. +..+.+++.+.+.++.+++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~------~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP------LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG------GGGCTTCSEESSSCC----
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC------hhhhhccceeehhhhcccC
Confidence 78888888888886555555667778888888888886 333321 3456778888888887753
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.3e-25 Score=204.29 Aligned_cols=222 Identities=21% Similarity=0.288 Sum_probs=196.7
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
..++.|++.++.+. .++..+..+++|++|++++|.+. .++..+..+++|++|++++|.+..+|..+..+++|++
T Consensus 81 ~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~----~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM----ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC----CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc----chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 58999999998877 45667888999999999998754 3456688999999999999999999999999999999
Q ss_pred EeccCCCcccccChhhcC---------CCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCE
Q 017094 149 LDLSRNSKIKKLPKSICE---------LQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRC 219 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~---------l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~ 219 (377)
|++++|...+.+|..+.. +++|++|++++| .+..+|..++.+++|++|++++|.+...+..++.+++|+.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence 999998888888887664 999999999997 5668999999999999999999999988888999999999
Q ss_pred EEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCC
Q 017094 220 LTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL 299 (377)
Q Consensus 220 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l 299 (377)
|++++|...+.+|..++.+++|+.|++++|... ..+|.++ ..+++|++|++++|...+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~------------------~~~p~~~--~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL------------------LTLPLDI--HRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC------------------CBCCTTG--GGCTTCCEEECTTCTTCCCC
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCch------------------hhcchhh--hcCCCCCEEeCCCCCchhhc
Confidence 999999988888888888888888888777644 3777777 88999999999999999999
Q ss_pred CccCCCCccCceecccCc
Q 017094 300 PGSLKDLEALETLAIRGC 317 (377)
Q Consensus 300 ~~~~~~l~~L~~L~l~~~ 317 (377)
|.++..+++|+.+++..+
T Consensus 294 P~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CGGGGGSCTTCEEECCGG
T ss_pred cHHHhhccCceEEeCCHH
Confidence 999999999999999865
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.1e-25 Score=222.70 Aligned_cols=269 Identities=13% Similarity=0.103 Sum_probs=205.7
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCch-----------------------------------------
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEK----------------------------------------- 107 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------------------------- 107 (377)
.+++.|++.++.+.. .+++.+.++++|++|++++|...
T Consensus 81 ~~V~~L~L~~~~l~g-~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEE-EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCC-cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 488999999887653 46788999999999999988430
Q ss_pred ----------------------------------hhHHHHHHHhhccCcccEEEeCCCcccc------------------
Q 017094 108 ----------------------------------TSQSFVESCFSKSQFLRVLNLRESALEV------------------ 135 (377)
Q Consensus 108 ----------------------------------~~~~~~~~~~~~~~~L~~L~L~~~~~~~------------------ 135 (377)
.... ++..+..+++|++|+|++|.+..
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 0011 45668899999999999999987
Q ss_pred CCcCcC--CCCccceEeccCCCcccccChhhcCCCcccEEeccCcc-ccc-cCchhhccc------ccccEeeecCcccc
Q 017094 136 CPRKMG--NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCL-ELE-ELPKDIRYL------VILRVFALTTKQKS 205 (377)
Q Consensus 136 l~~~~~--~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~-~~p~~l~~l------~~L~~L~l~~~~~~ 205 (377)
+|..++ .+++|++|++++|.....+|..++++++|++|++++|. ..+ .+|..++.+ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 999999 99999999999988788999999999999999999986 444 688888877 99999999999999
Q ss_pred cCcc--cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-----cCCCc-cceEEecccccccccchhh
Q 017094 206 LQES--GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-----NTRPR-LRRVFIKEITQLLELPQWL 277 (377)
Q Consensus 206 ~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~-L~~L~l~~~~~~~~l~~~~ 277 (377)
..|. .++.+++|+.|++++|...+.+| .++.+++|+.|++++|.... ...++ |++|+++++.. ..+|.++
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l-~~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC-SSCCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC-cccchhh
Confidence 8777 79999999999999998766777 78888899999998886543 12335 88888888753 3677655
Q ss_pred hhcCCCCccEEeecCCCCCCCCCccCC-------CCccCceecccCcccCCCCCcCC-CCCCCcCeeeccCCC
Q 017094 278 LQCCTDTLHTLVIGDCPNFMALPGSLK-------DLEALETLAIRGCPKLSSLPEDM-HHLTTLKLLAIGGCP 342 (377)
Q Consensus 278 ~~~~~~~L~~L~l~~~~~~~~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~c~ 342 (377)
....+++|++|++++|......|..+. .+++|++|++++|. ++.+|..+ ..+++|++|++++|.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC
Confidence 222334777777777766555565555 55667777776663 33454332 345666666666553
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=207.39 Aligned_cols=291 Identities=17% Similarity=0.166 Sum_probs=173.8
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR 147 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~ 147 (377)
++++++|++.++.+.... +..+..+++|++|++++|... ...+..+..+++|++|++++|.+..+|.. .+++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccccEEECCCCcccccC-hhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 367888888887766542 456778888888888887653 22345577788888888888888777766 678888
Q ss_pred eEeccCCCccc-ccChhhcCCCcccEEeccCccccc-------------------------cCchhhccc----------
Q 017094 148 YLDLSRNSKIK-KLPKSICELQSLQTLDLEGCLELE-------------------------ELPKDIRYL---------- 191 (377)
Q Consensus 148 ~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~-------------------------~~p~~l~~l---------- 191 (377)
+|++++|.... .+|..++.+++|++|++++|.... ..|..+..+
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 88888764333 356677777777777777653211 111111111
Q ss_pred -------------------------------------------------------------------------ccccEee
Q 017094 192 -------------------------------------------------------------------------VILRVFA 198 (377)
Q Consensus 192 -------------------------------------------------------------------------~~L~~L~ 198 (377)
++|++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 1344444
Q ss_pred ecCcccc-cCcccC-----------------------------------------------------CCCCCCCEEEccC
Q 017094 199 LTTKQKS-LQESGI-----------------------------------------------------RSLGSLRCLTISG 224 (377)
Q Consensus 199 l~~~~~~-~~~~~l-----------------------------------------------------~~l~~L~~L~l~~ 224 (377)
+++|.+. ..|..+ ..+++|+.|++++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 4444433 222222 3445555555555
Q ss_pred CCCchhhHHhcccCcccchhccccCCCCc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCC
Q 017094 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF 296 (377)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 296 (377)
|......+..++.+++|+.|++++|.... ...++|++|+++++.....+|...+ ..+++|++|++++|...
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~-~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-SWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC-CCCTTCCEEECCSSCCC
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh-ccCccCCEEECcCCCCC
Confidence 55444445555556666666666555442 2334566666665543333444311 34556666666665543
Q ss_pred CCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 297 MALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 297 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
+.+|..+. ++|++|++++| .++.+|..+..+++|++|++++|. ++..+.. .+..+.++..+.+.++++.
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~----~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDG----IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTT----TTTTCTTCCEEECCSSCBC
T ss_pred cchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHH----HhccCCcccEEECcCCCCc
Confidence 44443332 57777777776 455777766788888888888873 4444332 2455677888888888775
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1e-23 Score=213.00 Aligned_cols=289 Identities=13% Similarity=0.150 Sum_probs=201.5
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCC-chhhHHHHHHHhhcc-------CcccEEEeCCCccccCCc--
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDD-EKTSQSFVESCFSKS-------QFLRVLNLRESALEVCPR-- 138 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~-------~~L~~L~L~~~~~~~l~~-- 138 (377)
+++++|.+.++.+.. .+|..+.++++|+.|++++|. +.. ..++..+..+ ++|++|++++|.+..+|.
T Consensus 491 ~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg--~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 491 KDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISA--AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp TTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCH--HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred CCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCccc--ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 589999999887654 357789999999999999986 431 1344444444 499999999999999998
Q ss_pred CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccc-ccEeeecCcccccCcccCCCCCC-
Q 017094 139 KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVI-LRVFALTTKQKSLQESGIRSLGS- 216 (377)
Q Consensus 139 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~l~~l~~- 216 (377)
.++.+++|++|++++| .+..+| .++.+++|++|++++|. +..+|..+..+++ |+.|++++|.+...|..+..++.
T Consensus 568 ~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 8999999999999976 455888 78899999999999874 4588888888988 99999999888766655544432
Q ss_pred -CCEEEccCCCCch----------------------------hhHHhc-ccCcccchhccccCCCCccC-----------
Q 017094 217 -LRCLTISGCRDLE----------------------------HLFEEI-EQLSLLRTLLIHSYDDRKNT----------- 255 (377)
Q Consensus 217 -L~~L~l~~~~~~~----------------------------~~~~~l-~~l~~L~~L~l~~~~~~~~~----------- 255 (377)
|+.|++++|.... .+|..+ ..+++|+.|++++|.....+
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 5555555554322 233332 35566666766666544311
Q ss_pred --CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccC------cccCCCCCcCC
Q 017094 256 --RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRG------CPKLSSLPEDM 327 (377)
Q Consensus 256 --~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~------~~~~~~~~~~l 327 (377)
.++|+.|+|+++. +..+|..+....+++|+.|++++|.. ..+|..+..+++|+.|+|++ |.....+|..+
T Consensus 725 ~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp TTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 0167777777763 34677666212677788888877653 34777777777888887765 44455667777
Q ss_pred CCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 328 HHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 328 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
..+++|+.|++++|.- +.++... ...+..+.+.++++.
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l-------~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKL-------TPQLYILDIADNPNI 840 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCC-------CSSSCEEECCSCTTC
T ss_pred hcCCCCCEEECCCCCC-CccCHhh-------cCCCCEEECCCCCCC
Confidence 7778888888887754 4443331 146677777776664
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.8e-24 Score=210.81 Aligned_cols=223 Identities=19% Similarity=0.136 Sum_probs=109.9
Q ss_pred hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchh-hcccccccE
Q 017094 118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRV 196 (377)
Q Consensus 118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~ 196 (377)
..+++|++|++++|.+..+|..+..+++|++|++++|......|..+..+++|++|++++|.....+|.. +..+++|++
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 3344455555555554444444555555555555544222222334444555555555544333233322 445555555
Q ss_pred eeecCcccccC---cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-------cCCCccceEEecc
Q 017094 197 FALTTKQKSLQ---ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-------NTRPRLRRVFIKE 266 (377)
Q Consensus 197 L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~L~~L~l~~ 266 (377)
|++++|.+... +..+..+++|+.|++++|......+..+..+++|+.|++++|.... ...++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 55555554432 2344555555555555554443334445555555555555554322 1224566666665
Q ss_pred cccccccchhhhhcCCCCccEEeecCCCCCC---CCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 267 ITQLLELPQWLLQCCTDTLHTLVIGDCPNFM---ALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
+......|..+ ..+++|++|++++|...+ ..+..+..+++|++|++++|...+..|..+..+++|++|++++|.
T Consensus 435 n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 435 SLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 54333334344 455666666666554322 112335556666666666664433445556666666666666663
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=3.9e-24 Score=210.77 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCcc
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHM 146 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L 146 (377)
++.+++|++.++.+.... +..+.++++|++|++++|... ...+..+..+++|++|++++|.+..+ |..++.+++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 345666666655554432 234555566666666555432 11223345555555555555555544 4455555555
Q ss_pred ceEeccCCCcccccChhhcCCCcccEEeccCccccc-cCchhhcccccccEeeecCc
Q 017094 147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE-ELPKDIRYLVILRVFALTTK 202 (377)
Q Consensus 147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~ 202 (377)
++|++++|......+..++++++|++|++++|.... .+|..++++++|++|++++|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 555555442211112334444444444444442221 23444444444444444443
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.1e-24 Score=205.28 Aligned_cols=271 Identities=14% Similarity=0.128 Sum_probs=205.7
Q ss_pred CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cC-CcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094 94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VC-PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171 (377)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 171 (377)
++|++|++++|... ...+..+..+++|++|++++|.+. .+ +..+..+++|++|++++|......|..++.+++|+
T Consensus 30 ~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CccCEEEecCCccC---cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 78999999998654 233456889999999999999885 44 56799999999999998755555588899999999
Q ss_pred EEeccCccccccCchh--hcccccccEeeecCcccccCc-cc-CCCCCCCCEEEccCCCCchhhHHhccc----------
Q 017094 172 TLDLEGCLELEELPKD--IRYLVILRVFALTTKQKSLQE-SG-IRSLGSLRCLTISGCRDLEHLFEEIEQ---------- 237 (377)
Q Consensus 172 ~L~l~~~~~~~~~p~~--l~~l~~L~~L~l~~~~~~~~~-~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~---------- 237 (377)
+|++++|...+..|.. +..+++|++|++++|.+.... .. +..+++|++|++++|......+..+..
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 9999998654445554 889999999999999998763 33 789999999999998765444433333
Q ss_pred ------------------------CcccchhccccCCCCc----------------------------------------
Q 017094 238 ------------------------LSLLRTLLIHSYDDRK---------------------------------------- 253 (377)
Q Consensus 238 ------------------------l~~L~~L~l~~~~~~~---------------------------------------- 253 (377)
+++|+.|++++|....
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 3567788887775432
Q ss_pred -----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCC
Q 017094 254 -----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMH 328 (377)
Q Consensus 254 -----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 328 (377)
...++|++|+++++......|.++ ..+++|++|++++|......|..+..+++|++|++++|...+..|..+.
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccccccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 011467777777765554555566 7788999999998876655677888899999999999865444467778
Q ss_pred CCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094 329 HLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS 374 (377)
Q Consensus 329 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (377)
.+++|++|++++|. ++.... ..+..+.+++.+.+.++.+++
T Consensus 345 ~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 345 NLDKLEVLDLSYNH-IRALGD----QSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TCTTCCEEECCSSC-CCEECT----TTTTTCTTCCEEECCSSCCSC
T ss_pred CcccCCEEECCCCc-ccccCh----hhccccccccEEECCCCcccc
Confidence 89999999999985 333322 235567888888888887764
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.6e-23 Score=192.10 Aligned_cols=278 Identities=18% Similarity=0.228 Sum_probs=222.6
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
+.+++|.+.++.+.... .+..+++|++|++++|...... . +..+++|++|++++|.+..++ .+..+++|++
T Consensus 44 ~~L~~L~l~~~~i~~~~---~~~~~~~L~~L~l~~n~i~~~~----~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDIS----P-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCCCT---TGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccccEEEEeCCccccch---hhhhcCCccEEEccCCccccch----h-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 48999999988776643 5888999999999998764322 2 889999999999999998875 6899999999
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL 228 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 228 (377)
|++++| .+..++. +..+++|++|++++|.....++. +..+++|++|++++|.+...+. +..+++|+.|++++|...
T Consensus 115 L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred EECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence 999976 5666666 88999999999999866666554 8999999999999999887754 889999999999998754
Q ss_pred hhhHHhcccCcccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCC
Q 017094 229 EHLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLK 304 (377)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~ 304 (377)
. ++. +..+++|+.|++++|.... ...++|++|+++++. +..++. + ..+++|++|++++|. +..+ ..+.
T Consensus 191 ~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~n~-l~~~-~~~~ 262 (347)
T 4fmz_A 191 D-ISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP-L--ANLSQLTWLEIGTNQ-ISDI-NAVK 262 (347)
T ss_dssp C-CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-G--TTCTTCCEEECCSSC-CCCC-GGGT
T ss_pred c-ccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc-h--hcCCCCCEEECCCCc-cCCC-hhHh
Confidence 3 333 7889999999999987665 345789999999985 445555 4 788999999999985 4455 4578
Q ss_pred CCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094 305 DLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS 374 (377)
Q Consensus 305 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (377)
.+++|++|++++| .++.++ .+..+++|+.|++++|+--...+. .+..+..++.+.+.++.+..
T Consensus 263 ~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 263 DLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDME-----VIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp TCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHH-----HHHTCTTCSEEECCSSSCCC
T ss_pred cCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChh-----HhhccccCCEEEccCCcccc
Confidence 9999999999998 456565 478899999999999963222211 13346778888888887764
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.4e-24 Score=197.95 Aligned_cols=284 Identities=13% Similarity=0.104 Sum_probs=186.4
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~ 147 (377)
++++++.+.++.+.... +..+..+++|++|++++|... ...+..+..+++|++|++++|.+..++ ..++.+++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchhhCC-hhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 57889999888766643 335788999999999987653 223345788899999999999988764 4578899999
Q ss_pred eEeccCCCcccccChh-hcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094 148 YLDLSRNSKIKKLPKS-ICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 226 (377)
+|++++| .+..+|.. +..+++|++|++++|......|..+..+++|+.|++++|.++.. .+..+++|+.|++++|.
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc
Confidence 9999976 56677765 47899999999998754444455688899999999999988765 35556667776666654
Q ss_pred Cch------------------hhHHhcccCcccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcCCCC
Q 017094 227 DLE------------------HLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDT 284 (377)
Q Consensus 227 ~~~------------------~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~ 284 (377)
... .++. ...++|+.|++++|.... ...++|++|+++++......|..+ ..+++
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~ 273 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQR 273 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG--TTCSS
T ss_pred ccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHc--ccccc
Confidence 321 0100 112345555555554433 223466666666654333334444 55666
Q ss_pred ccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccce
Q 017094 285 LHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQ 364 (377)
Q Consensus 285 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~ 364 (377)
|++|++++|. +..+|..+..+++|++|++++| .++.+|..+..+++|+.|++++|+ ++.. .......++.
T Consensus 274 L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~-------~~~~~~~L~~ 343 (390)
T 3o6n_A 274 LERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTL-------KLSTHHTLKN 343 (390)
T ss_dssp CCEEECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCC-------CCCTTCCCSE
T ss_pred CCEEECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-ccee-------CchhhccCCE
Confidence 6666666654 3445555556667777777666 344556555666677777777665 2222 1334566777
Q ss_pred EEeCCCccC
Q 017094 365 IELDDEIIK 373 (377)
Q Consensus 365 ~~~~~~~~~ 373 (377)
+.+.++++.
T Consensus 344 L~l~~N~~~ 352 (390)
T 3o6n_A 344 LTLSHNDWD 352 (390)
T ss_dssp EECCSSCEE
T ss_pred EEcCCCCcc
Confidence 777777654
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=6.2e-24 Score=216.74 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=173.6
Q ss_pred CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCc
Q 017094 67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKH 145 (377)
Q Consensus 67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~ 145 (377)
.++.+++|++.++.+.... +..+..+++|++|++++|... ....+..+..+++|++|+|++|.+..+ |..++.+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 6679999999998877643 557899999999999987432 222245688999999999999998865 788999999
Q ss_pred cceEeccCCCcccccChh--hcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccC-cccCCCC--CCCCE
Q 017094 146 MRYLDLSRNSKIKKLPKS--ICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQ-ESGIRSL--GSLRC 219 (377)
Q Consensus 146 L~~L~l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l--~~L~~ 219 (377)
|++|++++|.....+|.. ++.+++|++|++++|...... +..++++++|+.|++++|.+... +..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 999999987554445554 889999999999998544433 35789999999999999887643 2344433 55666
Q ss_pred EEccCCCCchhhHHhcccCcc------cchhccccCCCCc----------------------------------------
Q 017094 220 LTISGCRDLEHLFEEIEQLSL------LRTLLIHSYDDRK---------------------------------------- 253 (377)
Q Consensus 220 L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~---------------------------------------- 253 (377)
|++++|......+..++.+++ |+.|++++|....
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 666555544433333333332 5555555442110
Q ss_pred ----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCC
Q 017094 254 ----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHH 329 (377)
Q Consensus 254 ----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 329 (377)
..+++|+.|+++++......+..+ ..+++|+.|++++|......+..+.++++|++|++++|......|..+..
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred hhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 002355666665554332223333 45556666666665543344445555666666666655433333445555
Q ss_pred CCCcCeeeccCC
Q 017094 330 LTTLKLLAIGGC 341 (377)
Q Consensus 330 l~~L~~L~l~~c 341 (377)
+++|+.|++++|
T Consensus 337 l~~L~~L~L~~N 348 (844)
T 3j0a_A 337 LPKVAYIDLQKN 348 (844)
T ss_dssp CTTCCEEECCSC
T ss_pred CCCCCEEECCCC
Confidence 566666666555
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.9e-24 Score=205.62 Aligned_cols=269 Identities=19% Similarity=0.188 Sum_probs=218.1
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCcc
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHM 146 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L 146 (377)
.+++++|.+.++.+.... +..+.++++|++|++++|.... .....+..+++|++|++++|.+..+ +..+..+++|
T Consensus 55 l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 55 FPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKL---IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCS---CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcCCc---cCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 358999999988776643 5679999999999999986542 2234578899999999999998865 6678999999
Q ss_pred ceEeccCCCcccccChhhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccC
Q 017094 147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISG 224 (377)
Q Consensus 147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~ 224 (377)
++|++++|......+..+..+++|++|++++|. +..+| ..+..+++|+.|++++|.+...+ ..+..+++|+.|++++
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 999999875444556678899999999999984 45554 46899999999999999888654 5788999999999999
Q ss_pred CCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCC
Q 017094 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMA 298 (377)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~ 298 (377)
|.....++.......+|+.|++++|.... ...++|+.|+++++.. ..++...+ ..+++|++|++++|.....
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSML-HELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC-CEECTTSC-TTCTTCCEEECCSSCCSEE
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC-CccChhhc-cccccCCEEECCCCccceE
Confidence 98887777776667799999999987655 3357899999999864 44444322 6789999999999876666
Q ss_pred CCccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeeeccCCCCc
Q 017094 299 LPGSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAIGGCPAL 344 (377)
Q Consensus 299 l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~c~~l 344 (377)
.|..+..+++|++|++++|. ++.++ ..+..+++|+.|++.+|+--
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCcc
Confidence 68889999999999999985 55555 45688999999999998743
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=8.5e-24 Score=211.12 Aligned_cols=294 Identities=16% Similarity=0.137 Sum_probs=195.6
Q ss_pred CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCC
Q 017094 66 SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLK 144 (377)
Q Consensus 66 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~ 144 (377)
..++++++|++.++.+.... +..+.++++|++|++++|... ...+..+..+++|++|++++|.+..+|. .++.++
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 34578999999998877643 456899999999999988654 2334568899999999999999998886 589999
Q ss_pred ccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcc-c--CCCCCCCCEE
Q 017094 145 HMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-G--IRSLGSLRCL 220 (377)
Q Consensus 145 ~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~--l~~l~~L~~L 220 (377)
+|++|++++|. +..++ ..++.+++|++|++++|......|..+.++++|++|++++|.++..+. . ...+++|+.|
T Consensus 98 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 98 NLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 99999999874 45554 678999999999999986655567778899999999999998876542 2 3356889999
Q ss_pred EccCCCCchhhHHhcccCcccchhcc---------------------------ccCCCCccC------C--CccceEEec
Q 017094 221 TISGCRDLEHLFEEIEQLSLLRTLLI---------------------------HSYDDRKNT------R--PRLRRVFIK 265 (377)
Q Consensus 221 ~l~~~~~~~~~~~~l~~l~~L~~L~l---------------------------~~~~~~~~~------~--~~L~~L~l~ 265 (377)
++++|......+..+..+++|+.|.+ ++|...... . ++|++|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 99998765544555555555554444 444322210 1 236666666
Q ss_pred ccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCC-----CCCc----CCCCCCCcCee
Q 017094 266 EITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLS-----SLPE----DMHHLTTLKLL 336 (377)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----~~~~----~l~~l~~L~~L 336 (377)
++......+.++ ..+++|++|++++|......|..+.++++|++|++++|.... .+|. .+..+++|+.|
T Consensus 257 ~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 257 YNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp TSCCCEECTTTT--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCcCccCcccc--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 554332223333 555666666666655444445556666666666666542211 2222 34556666666
Q ss_pred eccCCCCccccCCCCCCCCCCCCCccceEEeCCCc
Q 017094 337 AIGGCPALSERCKPPTGEDWPKIAHITQIELDDEI 371 (377)
Q Consensus 337 ~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~ 371 (377)
++++|. ++.. ....+..+..++.+.+.++.
T Consensus 335 ~l~~n~-l~~~----~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 335 NMEDND-IPGI----KSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp ECCSCC-BCCC----CTTTTTTCTTCCEEECTTCB
T ss_pred ECCCCc-cCCC----ChhHhccccCCcEEECCCCc
Confidence 666663 2221 11224455667777766543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=5.8e-24 Score=214.71 Aligned_cols=262 Identities=15% Similarity=0.132 Sum_probs=185.3
Q ss_pred CCCcEEEEEecccccc----------------chhhhhc--ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCC
Q 017094 69 KRVRHLSFAAANALRN----------------DFSSLLS--YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRE 130 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 130 (377)
++++.|.+.++.+... .+|..+. ++++|+.|++++|... ..++..+..+++|++|++++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~---~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM---TQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC---CSCCGGGGGCSSCCEEECTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC---ccChHHHhCCCCCCEEECcC
Confidence 4899999999887662 2677766 9999999999998643 34457789999999999999
Q ss_pred Cc-ccc--CCcCcCCCC-------ccceEeccCCCcccccCh--hhcCCCcccEEeccCccccccCchhhcccccccEee
Q 017094 131 SA-LEV--CPRKMGNLK-------HMRYLDLSRNSKIKKLPK--SICELQSLQTLDLEGCLELEELPKDIRYLVILRVFA 198 (377)
Q Consensus 131 ~~-~~~--l~~~~~~l~-------~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 198 (377)
|. +.. +|..++.++ +|++|++++| .+..+|. .++.+++|++|++++|. +..+| .++.+++|+.|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEE
Confidence 98 764 776655554 9999999987 5569998 89999999999999985 55888 899999999999
Q ss_pred ecCcccccCcccCCCCCC-CCEEEccCCCCchhhHHhcccCc--ccchhccccCCCCcc-----------CCCccceEEe
Q 017094 199 LTTKQKSLQESGIRSLGS-LRCLTISGCRDLEHLFEEIEQLS--LLRTLLIHSYDDRKN-----------TRPRLRRVFI 264 (377)
Q Consensus 199 l~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~-----------~~~~L~~L~l 264 (377)
+++|.+...|..+..+++ |+.|++++|... .+|..+..++ +|+.|++++|..... ..++|+.|++
T Consensus 602 Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred CcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 999999988888999999 999999998855 6776666554 388888888765331 1236777777
Q ss_pred cccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCC--------CccCceecccCcccCCCCCcCCC--CCCCcC
Q 017094 265 KEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKD--------LEALETLAIRGCPKLSSLPEDMH--HLTTLK 334 (377)
Q Consensus 265 ~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~--------l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~ 334 (377)
+++.. ..+|..++ ..+++|+.|++++|. +..+|..+.. +++|+.|+|++| .++.+|..+. .+++|+
T Consensus 681 s~N~L-~~lp~~~~-~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 681 SYNEI-QKFPTELF-ATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLS 756 (876)
T ss_dssp CSSCC-CSCCHHHH-HTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCC
T ss_pred cCCcC-CccCHHHH-ccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcC
Confidence 66533 35555442 245555555555543 2244433221 124555555544 2234444443 444444
Q ss_pred eeeccCC
Q 017094 335 LLAIGGC 341 (377)
Q Consensus 335 ~L~l~~c 341 (377)
.|++++|
T Consensus 757 ~L~Ls~N 763 (876)
T 4ecn_A 757 NMDVSYN 763 (876)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 4444444
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=2.8e-23 Score=202.82 Aligned_cols=291 Identities=17% Similarity=0.180 Sum_probs=190.5
Q ss_pred CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCcc
Q 017094 67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM 146 (377)
Q Consensus 67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L 146 (377)
.++.+++|++.++.+.... +..+..+++|++|++++|... ...+..+..+++|++|++++|.+..+|.. .+++|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp SCTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 4478999999998877643 457899999999999998654 23345688899999999999999888877 78999
Q ss_pred ceEeccCCCcccc--cChhhcCCCcccEEeccCcccccc-------------------------Cchhhcc---------
Q 017094 147 RYLDLSRNSKIKK--LPKSICELQSLQTLDLEGCLELEE-------------------------LPKDIRY--------- 190 (377)
Q Consensus 147 ~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~-------------------------~p~~l~~--------- 190 (377)
++|++++|. +.. .|..++++++|++|++++|..... .|..+..
T Consensus 124 ~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 124 RHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp SEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred CEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 999999774 444 346788888888888887642210 0111111
Q ss_pred -----------------cc-------------------------------------------------------cccEee
Q 017094 191 -----------------LV-------------------------------------------------------ILRVFA 198 (377)
Q Consensus 191 -----------------l~-------------------------------------------------------~L~~L~ 198 (377)
++ +|++|+
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 11 344444
Q ss_pred ecCcccc-cCcccC-----------------------------------------------------CCCCCCCEEEccC
Q 017094 199 LTTKQKS-LQESGI-----------------------------------------------------RSLGSLRCLTISG 224 (377)
Q Consensus 199 l~~~~~~-~~~~~l-----------------------------------------------------~~l~~L~~L~l~~ 224 (377)
+++|.+. ..|..+ ..+++|+.|++++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence 4444433 222222 4556677777777
Q ss_pred CCCchhhHHhcccCcccchhccccCCCCc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCC
Q 017094 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF 296 (377)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 296 (377)
|......+..++.+++|+.|++++|.... ...++|++|+++++.....+|...+ ..+++|++|++++|...
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-AWAESILVLNLSSNMLT 441 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-CCCTTCCEEECCSSCCC
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-cCcccCCEEECCCCCCC
Confidence 66655556666677777777777765543 2235677777777654433554322 45567777777776544
Q ss_pred CCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 297 MALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 297 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
...|..+. ++|++|++++| .++.+|..+..+++|++|++++|. ++.++.. .+..+.++..+.+.++++.
T Consensus 442 ~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~----~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 442 GSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDG----VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTT----STTTCTTCCCEECCSCCBC
T ss_pred cchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHH----HHhcCCCCCEEEecCCCcC
Confidence 44443322 67888888877 566778777788888888888874 4443322 2445677777888777765
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=4.1e-24 Score=210.60 Aligned_cols=266 Identities=17% Similarity=0.135 Sum_probs=145.8
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCc-CcCCCCcc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPR-KMGNLKHM 146 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~-~~~~l~~L 146 (377)
+++++|.+.++.+.. +|..+..+++|++|++++|... ...+..+..+++|++|++++|.+. .+|. .+..+++|
T Consensus 278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFE---NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCS---BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred cCCCEEeccCCccCC--CChhhcccccCCEEECccCCcC---cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 355555555554442 3444555566666666655432 122234555566666666666544 3332 35556666
Q ss_pred ceEeccCCCccccc--ChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCc--ccCCCCCCCCEEEc
Q 017094 147 RYLDLSRNSKIKKL--PKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE--SGIRSLGSLRCLTI 222 (377)
Q Consensus 147 ~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l 222 (377)
++|++++|...... +..+..+++|++|++++|......|..+..+++|+.|++++|.+.... ..+..+++|+.|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 66666654322211 445556666666666665444444555666666666666666655332 23556666666666
Q ss_pred cCCCCchhhHHhcccCcccchhccccCCCCc---------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCC
Q 017094 223 SGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK---------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDC 293 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~ 293 (377)
++|......+..++.+++|+.|++++|.... ...++|++|+++++......|..+ ..+++|++|++++|
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF--TSLKMMNHVDLSHN 510 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSS
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh--ccccCCCEEECCCC
Confidence 6665544445555666666666666665432 123456666666654333334444 55666666666666
Q ss_pred CCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 294 PNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 294 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
......|+.+..+++| +|++++|......|..+..+++|+.|++++||
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 5444455566666666 66666664443334445556666666666665
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=205.43 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=57.6
Q ss_pred ccceEEecccccccccchhhhhcCCCCccEEeecCCCCC-CCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCee
Q 017094 258 RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF-MALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLL 336 (377)
Q Consensus 258 ~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 336 (377)
+|++|+++++......|..+ ..+++|++|++++|... ..+|..+..+++|++|++++|......|..+..+++|+.|
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 44444444443333333333 44555555555555432 2355556666666666666664433445556666667777
Q ss_pred eccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 337 AIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 337 ~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
++++|. ++..+. ..+..+.++..+.+.++++.
T Consensus 500 ~l~~n~-l~~~~~----~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 500 NMASNQ-LKSVPD----GIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp ECCSSC-CSCCCT----TTTTTCTTCCEEECCSSCBC
T ss_pred eCCCCc-CCCCCH----HHhhcccCCcEEEecCCccc
Confidence 776662 333322 12445566777777777665
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.3e-24 Score=196.34 Aligned_cols=249 Identities=15% Similarity=0.150 Sum_probs=190.6
Q ss_pred CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCC-Cccc-cCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094 94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRE-SALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171 (377)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 171 (377)
.+++.|+++++..... ..++..+..+++|++|++++ +.+. .+|..++.+++|++|++++|.....+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~-~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSC-EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCC-cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 5788999988765310 03445688889999999984 7766 6788888999999999987755457888888899999
Q ss_pred EEeccCccccccCchhhcccccccEeeecCcccc-cCcccCCCCC-CCCEEEccCCCCchhhHHhcccCcccchhccccC
Q 017094 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKS-LQESGIRSLG-SLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSY 249 (377)
Q Consensus 172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 249 (377)
+|++++|.....+|..+..+++|++|++++|.+. ..+..++.++ +|+.|++++|......+..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999988655578888889999999999999887 5667788887 899999998877666677777665 777777766
Q ss_pred CCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCC
Q 017094 250 DDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHH 329 (377)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 329 (377)
... ...|..+ ..+++|++|++++|......| .+..+++|++|++++|.....+|..+..
T Consensus 208 ~l~------------------~~~~~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 208 MLE------------------GDASVLF--GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp EEE------------------ECCGGGC--CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ccc------------------CcCCHHH--hcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhc
Confidence 432 2455555 788999999999987544444 4788999999999999776688999999
Q ss_pred CCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCc
Q 017094 330 LTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEI 371 (377)
Q Consensus 330 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~ 371 (377)
+++|++|++++|+--...+.. ..+..+..+.+.+++
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~~------~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQG------GNLQRFDVSAYANNK 302 (313)
T ss_dssp CTTCCEEECCSSEEEEECCCS------TTGGGSCGGGTCSSS
T ss_pred CcCCCEEECcCCcccccCCCC------ccccccChHHhcCCC
Confidence 999999999999643343332 235556666665554
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.4e-23 Score=195.62 Aligned_cols=257 Identities=17% Similarity=0.193 Sum_probs=197.9
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~ 147 (377)
+++++|.+.++.+.... +..+..+++|++|++++|... ...+..+..+++|++|++++|.+..+|.. +..+++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCC---cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 48999999988776543 447889999999999998654 23345578899999999999999988876 58899999
Q ss_pred eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee-------------------cCcccccCc
Q 017094 148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL-------------------TTKQKSLQE 208 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-------------------~~~~~~~~~ 208 (377)
+|++++|......|..+..+++|++|++++|. +..++ +..+++|+.|++ ++|.+...+
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 99999875444445668899999999999874 44332 344455555544 444444332
Q ss_pred ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCC
Q 017094 209 SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCT 282 (377)
Q Consensus 209 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 282 (377)
. ...++|+.|++++|..... ..++.+++|+.|++++|.... ...++|++|+++++ .+..++... ..+
T Consensus 222 ~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l 294 (390)
T 3o6n_A 222 G--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYG--QPI 294 (390)
T ss_dssp C--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSS--SCC
T ss_pred c--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCccc--CCC
Confidence 2 2346899999999876542 568899999999999997655 34568999999997 455677665 778
Q ss_pred CCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094 283 DTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA 343 (377)
Q Consensus 283 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 343 (377)
++|++|++++|. +..+|..+..+++|++|++++|. ++.++ +..+++|+.|++++|+-
T Consensus 295 ~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 295 PTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp TTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 999999999985 66788888899999999999985 55555 67899999999999863
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=3.8e-23 Score=188.29 Aligned_cols=269 Identities=15% Similarity=0.137 Sum_probs=133.5
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
+.++.|.+.++.+.... +..+..+++|++|++++|... ...+..+..+++|++|++++|.+..+|..+. ++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCC---eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccE
Confidence 34455555544443321 223444555555555544332 1112334445555555555555544444332 44555
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCcccc--ccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLEL--EELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 226 (377)
|++++|......+..+..+++|++|++++|... ...+..+..+++|++|++++|.+...+..+. ++|+.|++++|.
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCc
Confidence 555543222122223444555555555544221 1233344455555555555555444433222 445555555544
Q ss_pred CchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCC
Q 017094 227 DLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL 306 (377)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l 306 (377)
.....+..+..+++|+.|++++|.. ....+..+ ..+++|++|++++|. +..+|.++..+
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l------------------~~~~~~~~--~~l~~L~~L~L~~N~-l~~lp~~l~~l 262 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSI------------------SAVDNGSL--ANTPHLRELHLNNNK-LVKVPGGLADH 262 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCC------------------CEECTTTG--GGSTTCCEEECCSSC-CSSCCTTTTTC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcC------------------ceeChhhc--cCCCCCCEEECCCCc-CccCChhhccC
Confidence 3333333444444444444444432 22222344 667888999998875 55788888888
Q ss_pred ccCceecccCcccCCCCCc-CCC------CCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCC
Q 017094 307 EALETLAIRGCPKLSSLPE-DMH------HLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDE 370 (377)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~-~l~------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 370 (377)
++|++|++++|. ++.++. .+. ..++|+.|++.++|--.....+ ..+.....+..+.+.++
T Consensus 263 ~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~---~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 263 KYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP---STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG---GGGTTCCCGGGEEC---
T ss_pred CCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCc---cccccccceeEEEeccc
Confidence 899999998874 444442 221 2477888888888743222111 23444566666666554
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.3e-23 Score=206.97 Aligned_cols=241 Identities=17% Similarity=0.078 Sum_probs=108.4
Q ss_pred hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCc
Q 017094 90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS 169 (377)
Q Consensus 90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~ 169 (377)
+..+++|+.|+++++..... + .+..+++|++|++++|.+..+| .+ .+++|++|++++|...... .+..+++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l----~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~ 351 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYL----E-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPS 351 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCC----C-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTT
T ss_pred cccCCCCCEEEecCccchhh----h-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCC
Confidence 55556666666665543211 1 3455555666666666555555 22 5555555555544333322 2334555
Q ss_pred ccEEeccCcccccc--CchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhH-HhcccCcccchhcc
Q 017094 170 LQTLDLEGCLELEE--LPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF-EEIEQLSLLRTLLI 246 (377)
Q Consensus 170 L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 246 (377)
|++|++++|..... .|..+..+++|+.|++++|.+...+..+..+++|+.|++++|......+ ..+..+++|+.|++
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 55555554422111 2444444555555555555444443444444555555554444333222 23444444455544
Q ss_pred ccCCCCc------cCCCccceEEecccccccc-cchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094 247 HSYDDRK------NTRPRLRRVFIKEITQLLE-LPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK 319 (377)
Q Consensus 247 ~~~~~~~------~~~~~L~~L~l~~~~~~~~-l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 319 (377)
++|.... ...++|++|+++++..... +|..+ ..+++|++|++++|......|.++..+++|++|++++|..
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 4444322 1123444444444432221 23333 3444444444444433333344444444444444444433
Q ss_pred CCCCCcCCCCCCCcCeeeccCC
Q 017094 320 LSSLPEDMHHLTTLKLLAIGGC 341 (377)
Q Consensus 320 ~~~~~~~l~~l~~L~~L~l~~c 341 (377)
.+..|..+..+++|+.|++++|
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTS
T ss_pred CCcCHHHccCCCcCCEEECCCC
Confidence 3333444444444444444444
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=2.9e-23 Score=189.28 Aligned_cols=279 Identities=14% Similarity=0.176 Sum_probs=155.8
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccce
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMRY 148 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~ 148 (377)
+++.+.+.++.+.. +|..+ .+++++|++++|... ...+..+..+++|++|++++|.+..+ |..++.+++|++
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCccc--cCCCC--CCCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 45555555544432 22222 256666666666433 12223456666666777766666644 455666666777
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCcccc---cCcccCCCCCCCCEEEccC
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQKS---LQESGIRSLGSLRCLTISG 224 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~---~~~~~l~~l~~L~~L~l~~ 224 (377)
|++++| .+..+|..+. ++|++|++++|. +..+| ..+..+++|+.|++++|.+. ..+..+..+ +|+.|++++
T Consensus 107 L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 107 LYISKN-HLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EECCSS-CCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EECCCC-cCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 776654 4455555443 566666666653 33343 33566666666666666654 223344444 666666666
Q ss_pred CCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCC
Q 017094 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMA 298 (377)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~ 298 (377)
|... .+|..+. ++|+.|++++|.... ...++|++|+++++......+.++ ..+++|++|++++|. +..
T Consensus 182 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~ 255 (332)
T 2ft3_A 182 AKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNK-LSR 255 (332)
T ss_dssp SBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSSC-CCB
T ss_pred CCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--hCCCCCCEEECCCCc-Cee
Confidence 5532 2333222 466666666665443 223466666666653332223344 677888888888865 557
Q ss_pred CCccCCCCccCceecccCcccCCCCC-cCCCC------CCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCC
Q 017094 299 LPGSLKDLEALETLAIRGCPKLSSLP-EDMHH------LTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDE 370 (377)
Q Consensus 299 l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~------l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 370 (377)
+|.++..+++|++|++++|. ++.++ ..+.. .++|+.|++.+||.......+ ..+..+.++..+.+.++
T Consensus 256 lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC---
T ss_pred cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCc---ccccccchhhhhhcccc
Confidence 78778888888888888874 44443 22222 467888888888743222111 12334555666665543
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.7e-23 Score=203.19 Aligned_cols=280 Identities=14% Similarity=0.105 Sum_probs=178.8
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~ 147 (377)
..++.+.+.++.+.... +..+..+++|++|++++|... ...+..+..+++|++|+|++|.+..+|. .++.+++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEESEEC-THHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCCCCCcC-HHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 46777888777665543 345778888999998887653 2233457788888999998888886654 468888899
Q ss_pred eEeccCCCcccccChh-hcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094 148 YLDLSRNSKIKKLPKS-ICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 226 (377)
+|++++| .+..+|.. ++.+++|++|++++|......|..+..+++|+.|++++|.+... .++.+++|+.|++++|.
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSC
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCc
Confidence 9999876 55666655 47888899999988755444555688888889999888887765 34556667777666654
Q ss_pred CchhhHHhcccCc---------------------ccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcC
Q 017094 227 DLEHLFEEIEQLS---------------------LLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCC 281 (377)
Q Consensus 227 ~~~~~~~~l~~l~---------------------~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 281 (377)
... +...+ +|+.|++++|.... ...++|+.|+++++......|..+ ..
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~ 276 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF--VK 276 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG--TT
T ss_pred ccc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHh--cC
Confidence 321 12223 44445554444332 223456666666654443344444 55
Q ss_pred CCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCc
Q 017094 282 TDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAH 361 (377)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ 361 (377)
+++|+.|++++|. +..+|..+..+++|+.|++++|. ++.+|..+..+++|+.|++++|+- +.. .+..+..
T Consensus 277 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l-~~~-------~~~~~~~ 346 (597)
T 3oja_B 277 MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI-VTL-------KLSTHHT 346 (597)
T ss_dssp CSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC-CCC-------CCCTTCC
T ss_pred ccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCC-CCc-------ChhhcCC
Confidence 6666666666654 33455555566666666666663 345665556666677777766652 222 1334566
Q ss_pred cceEEeCCCcc
Q 017094 362 ITQIELDDEII 372 (377)
Q Consensus 362 ~~~~~~~~~~~ 372 (377)
+..+.+.++++
T Consensus 347 L~~L~l~~N~~ 357 (597)
T 3oja_B 347 LKNLTLSHNDW 357 (597)
T ss_dssp CSEEECCSSCE
T ss_pred CCEEEeeCCCC
Confidence 77777777665
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2e-23 Score=203.22 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=95.4
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCcc
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHM 146 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L 146 (377)
++.+++|++.++.+.... +..+..+++|++|++++|... ...+..+..+++|++|++++|.+..++.. ++.+++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 357777777777665432 445677777777777776543 22234466777777777777777665543 6777777
Q ss_pred ceEeccCCCccc-ccChhhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCccccc-CcccCCCCCCCCEEEcc
Q 017094 147 RYLDLSRNSKIK-KLPKSICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTIS 223 (377)
Q Consensus 147 ~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~ 223 (377)
++|++++|.... ..|..++.+++|++|++++|.....+| ..+..+++|++|++++|.+.. .+..++.+++|+.|++.
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 777777653222 335556677777777777765455554 356677777777777766654 33445544444444444
Q ss_pred CC
Q 017094 224 GC 225 (377)
Q Consensus 224 ~~ 225 (377)
+|
T Consensus 181 ~n 182 (549)
T 2z81_A 181 LS 182 (549)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=7.7e-23 Score=199.10 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=90.6
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc--CCcCcCCCCc
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV--CPRKMGNLKH 145 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~l~~ 145 (377)
.+++++|.+.++.+.... +..+..+++|++|++++|... ...+..+..+++|++|++++|.+.. .|..++.+++
T Consensus 49 l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 49 CANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLS---SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCC---SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred CCcccEEECCCCCcCccC-hhhccccccCCEEECCCCccC---ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 358999999988776543 457889999999999998654 3344568889999999999999874 4678889999
Q ss_pred cceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcc
Q 017094 146 MRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRY 190 (377)
Q Consensus 146 L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 190 (377)
|++|++++|...+.+| ..+..+++|++|++++|......|..+..
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 9999999876566665 46778888888888877544444544433
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.3e-23 Score=202.78 Aligned_cols=257 Identities=17% Similarity=0.185 Sum_probs=199.2
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~ 147 (377)
+++++|.+.++.+.... +..+..+++|++|++++|.+. ...+..+..+++|++|+|++|.+..+|.. ++.+++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCC---CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 48999999988776643 457899999999999998654 23345578899999999999999988776 58999999
Q ss_pred eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcc-------------------cccCc
Q 017094 148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ-------------------KSLQE 208 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-------------------~~~~~ 208 (377)
+|++++|......|..++.+++|++|++++|. +..++ ++.+++|+.|++++|. +...+
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 99999875544556678899999999999874 44443 3445555555555544 43332
Q ss_pred ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCC
Q 017094 209 SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCT 282 (377)
Q Consensus 209 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 282 (377)
.. ..++|+.|++++|.... +..++.+++|+.|++++|.... ...++|+.|+|+++ .+..+|... ..+
T Consensus 228 ~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l 300 (597)
T 3oja_B 228 GP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYG--QPI 300 (597)
T ss_dssp CS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSS--SCC
T ss_pred cc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCccc--ccC
Confidence 21 23578889998887654 3668899999999999998755 34568999999997 455677666 778
Q ss_pred CCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094 283 DTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA 343 (377)
Q Consensus 283 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 343 (377)
++|+.|++++|. +..+|.++..+++|+.|++++|. +..++ +..+++|+.|++++|+-
T Consensus 301 ~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 301 PTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp TTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 999999999986 55788888899999999999986 45554 67889999999999973
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=3.9e-22 Score=190.22 Aligned_cols=275 Identities=16% Similarity=0.198 Sum_probs=117.1
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL 149 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 149 (377)
++++|.+.++.+... + .+..+++|++|++++|...... . +..+++|++|++++|.+..++. +..+++|++|
T Consensus 47 ~l~~L~l~~~~i~~l--~-~~~~l~~L~~L~Ls~n~l~~~~----~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 47 QVTTLQADRLGIKSI--D-GVEYLNNLTQINFSNNQLTDIT----P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp TCCEEECCSSCCCCC--T-TGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred cccEEecCCCCCccC--c-chhhhcCCCEEECCCCccCCch----h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 445555544443332 1 2444555555555554432111 1 4445555555555555444433 4445555555
Q ss_pred eccCCCcccccChhhcCCCcccEEeccCccccccCch--------------------hhcccccccEeeecCcccccCcc
Q 017094 150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPK--------------------DIRYLVILRVFALTTKQKSLQES 209 (377)
Q Consensus 150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~--------------------~l~~l~~L~~L~l~~~~~~~~~~ 209 (377)
++++| .+..++. +..+++|++|++++|. +..++. .+.++++|+.|++++|.+... .
T Consensus 118 ~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~ 193 (466)
T 1o6v_A 118 TLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S 193 (466)
T ss_dssp ECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G
T ss_pred ECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h
Confidence 55543 3333332 4444444444444431 222211 134444455555555444433 2
Q ss_pred cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc----cCCCccceEEeccccc----------------
Q 017094 210 GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQ---------------- 269 (377)
Q Consensus 210 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~---------------- 269 (377)
.+..+++|+.|++++|......+ ++.+++|+.|++++|.... ...++|++|+++++..
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 271 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence 34444445555554443322111 3334444444444443222 1123344444444321
Q ss_pred -----ccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCc
Q 017094 270 -----LLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL 344 (377)
Q Consensus 270 -----~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 344 (377)
+..++. + ..+++|+.|++++|. +..++. +..+++|++|++++|. ++.++. +..+++|+.|++++|+ +
T Consensus 272 l~~n~l~~~~~-~--~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l 343 (466)
T 1o6v_A 272 LGANQISNISP-L--AGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNK-V 343 (466)
T ss_dssp CCSSCCCCCGG-G--TTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSC-C
T ss_pred CCCCccCcccc-c--cCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCc-c
Confidence 112222 2 344444555554443 222222 3445555555555553 222222 3455555555555552 2
Q ss_pred cccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 345 SERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 345 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
+.. ..+..+.++..+.+.++.+.
T Consensus 344 ~~~------~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 344 SDV------SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCC------GGGTTCTTCCEEECCSSCCC
T ss_pred CCc------hhhccCCCCCEEeCCCCccC
Confidence 222 12334455666666665553
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.9e-22 Score=182.49 Aligned_cols=246 Identities=16% Similarity=0.132 Sum_probs=161.0
Q ss_pred CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094 121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL 199 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 199 (377)
+.+++|++++|.+..++. .+..+++|++|++++|......|..++.+++|++|++++| .+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 466667777766665544 5666677777777655333233556666677777777665 3445555443 56677777
Q ss_pred cCcccccCc-ccCCCCCCCCEEEccCCCCch--hhHHhcccCcccchhccccCCCCc---cCCCccceEEeccccccccc
Q 017094 200 TTKQKSLQE-SGIRSLGSLRCLTISGCRDLE--HLFEEIEQLSLLRTLLIHSYDDRK---NTRPRLRRVFIKEITQLLEL 273 (377)
Q Consensus 200 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~L~~L~l~~~~~~~~l 273 (377)
++|.+...+ ..+..+++|+.|++++|.... ..+..+..+++|+.|++++|.... ..+++|++|+++++......
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 208 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccC
Confidence 766666443 345666777777776665432 334456666777777776665443 22357888888877543333
Q ss_pred chhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCC
Q 017094 274 PQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTG 353 (377)
Q Consensus 274 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 353 (377)
+..+ ..+++|++|++++|......+..+..+++|++|++++| .++.+|..+..+++|++|++++|+ ++..+...-.
T Consensus 209 ~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~ 284 (330)
T 1xku_A 209 AASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFC 284 (330)
T ss_dssp TGGG--TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSS
T ss_pred HHHh--cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcC
Confidence 5556 78899999999998755555567889999999999998 566899889999999999999985 4444322111
Q ss_pred -CC-CCCCCccceEEeCCCccC
Q 017094 354 -ED-WPKIAHITQIELDDEIIK 373 (377)
Q Consensus 354 -~~-~~~i~~~~~~~~~~~~~~ 373 (377)
.. ......+..+.+.++++.
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSC
T ss_pred CcccccccccccceEeecCccc
Confidence 00 112356777888887764
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.4e-21 Score=185.50 Aligned_cols=200 Identities=19% Similarity=0.146 Sum_probs=130.9
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
+++++|++.++.+... + .+..+++|++|++++|.+... .+..+++|++|++++|.+..++ ++.+++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~------~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL------DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE------ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 4788888887766653 3 577888888888888765432 1677788888888888877764 777888888
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL 228 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 228 (377)
|++++| .+..+| ++.+++|++|++++| .+..++ ++.+++|++|++++|...... .++.+++|+.|++++|+..
T Consensus 111 L~L~~N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 111 LNCDTN-KLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EECCSS-CCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCC
T ss_pred EECCCC-cCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccc
Confidence 888865 455554 677788888888776 344443 667777777777777433221 4666777777777776543
Q ss_pred hhhHHhcccCcccchhccccCCCCc---cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCC
Q 017094 229 EHLFEEIEQLSLLRTLLIHSYDDRK---NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCP 294 (377)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~ 294 (377)
. ++ ++.+++|+.|++++|.... ...++|++|+++++. +..+| + ..+++|++|++++|.
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~-l~~ip--~--~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK-LTEID--V--TPLTQLTYFDCSVNP 244 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCC--C--TTCTTCSEEECCSSC
T ss_pred e-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCc-ccccC--c--cccCCCCEEEeeCCc
Confidence 3 32 5566677777776665443 234566666666653 33344 2 456666666666654
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=8.4e-22 Score=187.90 Aligned_cols=276 Identities=18% Similarity=0.231 Sum_probs=164.8
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
+++++|++.++.+.... + +..+++|+.|++++|...... . +..+++|++|++++|.+..++. +..+++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADIT----P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred cCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccCh----h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 46777777766555432 2 566666666666665443211 1 4555566666666555554433 444555555
Q ss_pred EeccCCCcccccCh--------------------hhcCCCcccEEeccCccccccCchhhcc------------------
Q 017094 149 LDLSRNSKIKKLPK--------------------SICELQSLQTLDLEGCLELEELPKDIRY------------------ 190 (377)
Q Consensus 149 L~l~~~~~~~~l~~--------------------~~~~l~~L~~L~l~~~~~~~~~p~~l~~------------------ 190 (377)
|++++|. +..++. .+..+++|++|++++|. +..++ .+..
T Consensus 139 L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 139 LELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred EECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCcccccc
Confidence 5554431 221111 13444555555555542 22222 2444
Q ss_pred ----cccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc----cCCCccceE
Q 017094 191 ----LVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRV 262 (377)
Q Consensus 191 ----l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L 262 (377)
+++|+.|++++|.+... ..+..+++|+.|++++|......+ +..+++|+.|++++|.... ...++|++|
T Consensus 216 ~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 292 (466)
T 1o6v_A 216 PLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL 292 (466)
T ss_dssp GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred cccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeE
Confidence 44555555555544443 245556666666666655433222 6667777777777776544 345689999
Q ss_pred EecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 263 FIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 263 ~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
+++++. +..++. + ..+++|+.|++++|... .++. +..+++|++|++++| .++.++ .+..+++|+.|++++|+
T Consensus 293 ~L~~n~-l~~~~~-~--~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 293 ELNENQ-LEDISP-I--SNLKNLTYLTLYFNNIS-DISP-VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ECCSSC-CSCCGG-G--GGCTTCSEEECCSSCCS-CCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred EcCCCc-ccCchh-h--cCCCCCCEEECcCCcCC-Cchh-hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 999875 444544 3 78899999999998644 4433 678999999999998 455554 57899999999999996
Q ss_pred CccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094 343 ALSERCKPPTGEDWPKIAHITQIELDDEIIKS 374 (377)
Q Consensus 343 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (377)
- ++... +..+..+..+.+.++.+..
T Consensus 365 l-~~~~~------~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 365 I-SDLTP------LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp C-CBCGG------GTTCTTCCEEECCCEEEEC
T ss_pred c-Cccch------hhcCCCCCEEeccCCcccC
Confidence 4 33321 3346677777777766543
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=197.85 Aligned_cols=223 Identities=18% Similarity=0.077 Sum_probs=162.0
Q ss_pred ccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChh--------------------hcCCCcccEEeccCc
Q 017094 119 KSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKS--------------------ICELQSLQTLDLEGC 178 (377)
Q Consensus 119 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~--------------------~~~l~~L~~L~l~~~ 178 (377)
.+++|+.|+++++.+..+|..+..+ +|++|++++| .+..+|.. ...+++|++|++++|
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESC-BCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred CcCcccEEEecCccchhhhhhhccC-CccEEeeccC-cccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 3455566666666655555555555 5555555544 22333321 035567777777766
Q ss_pred ccccc--CchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhH-HhcccCcccchhccccCCCCc--
Q 017094 179 LELEE--LPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF-EEIEQLSLLRTLLIHSYDDRK-- 253 (377)
Q Consensus 179 ~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~-- 253 (377)
..... .|..+..+++|++|++++|.+...+..+..+++|+.|++++|......+ ..+..+++|+.|++++|....
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 32222 2567788888999999988888776668889999999999887554433 357789999999999987654
Q ss_pred ----cCCCccceEEecccccc-cccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCC
Q 017094 254 ----NTRPRLRRVFIKEITQL-LELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMH 328 (377)
Q Consensus 254 ----~~~~~L~~L~l~~~~~~-~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 328 (377)
...++|++|+++++... ..+|..+ ..+++|++|++++|......|.++..+++|++|++++|......+..+.
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 33568999999998754 3577776 8899999999999986666688899999999999999965444456688
Q ss_pred CCCCcCeeeccCCCCcc
Q 017094 329 HLTTLKLLAIGGCPALS 345 (377)
Q Consensus 329 ~l~~L~~L~l~~c~~l~ 345 (377)
.+++|+.|++++|+--.
T Consensus 516 ~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 516 RLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TCTTCCEEECCSSCBCC
T ss_pred cccCCcEEEecCCcccC
Confidence 99999999999987443
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=7.7e-22 Score=190.78 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=125.9
Q ss_pred cccccccEeeecCccccc-CcccCCCCCCCCEEEccCCCCch--hhHHhcccCcccchhccccCCCCc-------cCCCc
Q 017094 189 RYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTISGCRDLE--HLFEEIEQLSLLRTLLIHSYDDRK-------NTRPR 258 (377)
Q Consensus 189 ~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~ 258 (377)
..+++|++|++++|.+.. .+..++.+++|+.|++++|+... .++..++.+++|+.|++++|.... ...++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 578899999999999886 56788999999999999998765 677789999999999999998765 22468
Q ss_pred cceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcC-CCCCCCcCeee
Q 017094 259 LRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPED-MHHLTTLKLLA 337 (377)
Q Consensus 259 L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~ 337 (377)
|++|+++++......|..+ .++|++|++++|. +..+|..+..+++|++|++++| .++.+|.. +..+++|+.|+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCEEECCSSCCCGGGGGSC----CTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECcCCCCCcchhhhh----cccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 9999999986555555433 2799999999986 5689988889999999999998 56678876 88999999999
Q ss_pred ccCCCCc
Q 017094 338 IGGCPAL 344 (377)
Q Consensus 338 l~~c~~l 344 (377)
+++|+--
T Consensus 475 l~~N~~~ 481 (520)
T 2z7x_B 475 LHTNPWD 481 (520)
T ss_dssp CCSSCBC
T ss_pred CcCCCCc
Confidence 9999744
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=4.8e-22 Score=194.03 Aligned_cols=262 Identities=18% Similarity=0.214 Sum_probs=195.5
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC--cCcCCCCcc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP--RKMGNLKHM 146 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~~~~~l~~L 146 (377)
+++++|.+.++.+.... +..+..+++|++|++++|.... ++.. .+++|++|++++|.+..++ ..++.+++|
T Consensus 76 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~----lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRLQN----ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCCCE----ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred CCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcCCc----cCcc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 58999999988777643 5578889999999999887642 2222 6788888888888887653 678888888
Q ss_pred ceEeccCCCccc-------------------------ccChhhcC--------------------------CC-------
Q 017094 147 RYLDLSRNSKIK-------------------------KLPKSICE--------------------------LQ------- 168 (377)
Q Consensus 147 ~~L~l~~~~~~~-------------------------~l~~~~~~--------------------------l~------- 168 (377)
++|++++|.... ..|..+.. ++
T Consensus 149 ~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 228 (562)
T 3a79_B 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228 (562)
T ss_dssp CEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred cEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecc
Confidence 888887653211 01111111 11
Q ss_pred ------------------------------------------------cccEEeccCccccccCchhh------------
Q 017094 169 ------------------------------------------------SLQTLDLEGCLELEELPKDI------------ 188 (377)
Q Consensus 169 ------------------------------------------------~L~~L~l~~~~~~~~~p~~l------------ 188 (377)
+|++|++++|...+.+|..+
T Consensus 229 ~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp ECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred cccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 45555555543323444433
Q ss_pred -----------------------------------------cccccccEeeecCccccc-CcccCCCCCCCCEEEccCCC
Q 017094 189 -----------------------------------------RYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 189 -----------------------------------------~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 226 (377)
..+++|++|++++|.+.. .+..++.+++|+.|++++|+
T Consensus 309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred hhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 567899999999999886 45788999999999999988
Q ss_pred Cch--hhHHhcccCcccchhccccCCCCc-------cCCCccceEEecccccccccchhhhhcCC-CCccEEeecCCCCC
Q 017094 227 DLE--HLFEEIEQLSLLRTLLIHSYDDRK-------NTRPRLRRVFIKEITQLLELPQWLLQCCT-DTLHTLVIGDCPNF 296 (377)
Q Consensus 227 ~~~--~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~ 296 (377)
... .++..++.+++|+.|++++|.... ...++|++|+++++......|. .+ ++|++|++++|. +
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~N~-l 462 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHNNR-I 462 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCSSC-C
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCCCc-C
Confidence 654 566778999999999999998754 2246899999999865444443 33 699999999985 6
Q ss_pred CCCCccCCCCccCceecccCcccCCCCCcC-CCCCCCcCeeeccCCCCc
Q 017094 297 MALPGSLKDLEALETLAIRGCPKLSSLPED-MHHLTTLKLLAIGGCPAL 344 (377)
Q Consensus 297 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~c~~l 344 (377)
..+|..+..+++|++|++++|. ++.+|.. +..+++|+.|++++|+--
T Consensus 463 ~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 463 MSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred cccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 7899888899999999999984 5678876 889999999999999743
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=8.9e-22 Score=200.83 Aligned_cols=270 Identities=16% Similarity=0.074 Sum_probs=205.8
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc-CCcC--cCCCC
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV-CPRK--MGNLK 144 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-l~~~--~~~l~ 144 (377)
-+++++|++.++.....--+..+.++++|++|++++|... ...+..+..+++|++|+|++|.+.. .|.. ++.++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY---FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC---EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc---ccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 3689999999885433212567999999999999998654 2345678899999999999999874 4544 89999
Q ss_pred ccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCchhhccc--ccccEeeecCcccccC-cccCCCCCC----
Q 017094 145 HMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPKDIRYL--VILRVFALTTKQKSLQ-ESGIRSLGS---- 216 (377)
Q Consensus 145 ~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l--~~L~~L~l~~~~~~~~-~~~l~~l~~---- 216 (377)
+|++|++++|...... +..++++++|++|++++|......+..+..+ ++|+.|++++|.+... +..++.+++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 9999999987544332 3578999999999999986656667778777 8999999999988753 345555554
Q ss_pred --CCEEEccCCCCchhhHHhc------------------------------------cc--CcccchhccccCCCCc---
Q 017094 217 --LRCLTISGCRDLEHLFEEI------------------------------------EQ--LSLLRTLLIHSYDDRK--- 253 (377)
Q Consensus 217 --L~~L~l~~~~~~~~~~~~l------------------------------------~~--l~~L~~L~l~~~~~~~--- 253 (377)
|+.|++++|......+..+ .. .++|+.|++++|....
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 9999999885433222211 11 2678999998887544
Q ss_pred ---cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCC
Q 017094 254 ---NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHL 330 (377)
Q Consensus 254 ---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 330 (377)
...++|+.|+++++......+..+ ..+++|++|++++|......+..+..+++|++|++++|......+..+..+
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 335689999999986554445555 788999999999987655567889999999999999985433334567889
Q ss_pred CCcCeeeccCCC
Q 017094 331 TTLKLLAIGGCP 342 (377)
Q Consensus 331 ~~L~~L~l~~c~ 342 (377)
++|+.|++++|.
T Consensus 362 ~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 362 EKLQTLDLRDNA 373 (844)
T ss_dssp CCCCEEEEETCC
T ss_pred CCCCEEECCCCC
Confidence 999999999985
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=4.2e-22 Score=181.51 Aligned_cols=265 Identities=19% Similarity=0.155 Sum_probs=203.2
Q ss_pred CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCCCcccEE
Q 017094 95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTL 173 (377)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 173 (377)
+++.++++++..... +..+ .++|++|++++|.+..++ ..+..+++|++|++++|......|..++.+++|++|
T Consensus 34 ~l~~l~~~~~~l~~i----p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV----PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSSC----CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCcccc----CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 688899888755321 2212 368999999999998774 579999999999999875443447789999999999
Q ss_pred eccCccccccCchhhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccCCCCch--hhHHhcccCcccchhccccCC
Q 017094 174 DLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISGCRDLE--HLFEEIEQLSLLRTLLIHSYD 250 (377)
Q Consensus 174 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~ 250 (377)
++++| .+..+|..+. ++|++|++++|.+...+. .+..+++|+.|++++|.... ..+..+..+ +|+.|++++|.
T Consensus 108 ~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 99997 5667877665 899999999999987754 58899999999999988642 445566667 99999999987
Q ss_pred CCcc---CCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCC
Q 017094 251 DRKN---TRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM 327 (377)
Q Consensus 251 ~~~~---~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l 327 (377)
.... .+++|++|+++++......+..+ ..+++|++|++++|......+.++..+++|++|++++| .++.+|..+
T Consensus 184 l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l 260 (332)
T 2ft3_A 184 LTGIPKDLPETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL 260 (332)
T ss_dssp CSSCCSSSCSSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTG
T ss_pred CCccCccccCCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhh
Confidence 6552 23689999999985443333455 78899999999998755555567889999999999998 566899889
Q ss_pred CCCCCcCeeeccCCCCccccCCCCCC-CCC-CCCCccceEEeCCCccC
Q 017094 328 HHLTTLKLLAIGGCPALSERCKPPTG-EDW-PKIAHITQIELDDEIIK 373 (377)
Q Consensus 328 ~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~-~~i~~~~~~~~~~~~~~ 373 (377)
..+++|++|++++|+ ++..+...-. ..+ .....+..+.+.++++.
T Consensus 261 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccc
Confidence 999999999999985 4444332211 111 11355778888887765
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=5.1e-22 Score=178.88 Aligned_cols=225 Identities=19% Similarity=0.205 Sum_probs=129.8
Q ss_pred CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC---CcCcCCCCccceEeccCCCcccccChhhcCCCcc
Q 017094 94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC---PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL 170 (377)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L 170 (377)
+++++|++++|... ......+..+++|++|++++|.+... +..+..+++|++|++++| .+..+|..+..+++|
T Consensus 28 ~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTC
T ss_pred CCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCC
Confidence 45556665555432 11112345555566666655555422 334444555566666544 344455555555556
Q ss_pred cEEeccCccccccCc--hhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCch-hhHHhcccCcccchhcc
Q 017094 171 QTLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLI 246 (377)
Q Consensus 171 ~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l 246 (377)
++|++++| .+..++ ..+..+++|++|++++|.+... +..+..+++|++|++++|.... ..+..+..+++|+.|++
T Consensus 104 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 66665554 233332 2455555555555555555433 2334555555555555554332 23344445555555555
Q ss_pred ccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcC
Q 017094 247 HSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPED 326 (377)
Q Consensus 247 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 326 (377)
++|.. ....|..+ ..+++|++|++++|......+..+..+++|++|++++|......|..
T Consensus 183 s~n~l------------------~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 183 SQCQL------------------EQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp TTSCC------------------CEECTTTT--TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred CCCCc------------------CCcCHHHh--cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 54432 22334455 67889999999998754444446788999999999999766667777
Q ss_pred CCCCC-CcCeeeccCCCC
Q 017094 327 MHHLT-TLKLLAIGGCPA 343 (377)
Q Consensus 327 l~~l~-~L~~L~l~~c~~ 343 (377)
+..++ +|+.|++++|+-
T Consensus 243 ~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCCCTTCCEEECTTCCE
T ss_pred HHhhhccCCEEEccCCCe
Confidence 88874 899999999863
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.4e-21 Score=185.52 Aligned_cols=227 Identities=15% Similarity=0.111 Sum_probs=155.7
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
+++++|.+.++.+.... +..+++|++|++++|.+... .+..+++|++|++++|.+..+| ++.+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCcee------ecCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 58889999888776642 77888999999998876532 1778889999999999888775 788888999
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL 228 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 228 (377)
|++++| .+..++ ++.+++|++|++++|..++.+ .+..+++|+.|++++|.++..+ +..+++|+.|++++|...
T Consensus 132 L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 132 LNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred EECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence 999876 455554 677888888888887666665 3677788888888888777763 777777888888777644
Q ss_pred hhhHHhcccCcccchhccccCCCCc---cCCCccceEEecccccccccchhhhhcCCCCccE----------EeecCCCC
Q 017094 229 EHLFEEIEQLSLLRTLLIHSYDDRK---NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHT----------LVIGDCPN 295 (377)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~----------L~l~~~~~ 295 (377)
.. .++.+++|+.|++++|.... ...++|+.|+++++. +..+|. ..+++|+. |++++|..
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~-l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP-LTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred ee---ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc-CCCcCH----HHCCCCCEEeccCCCCCEEECCCCcc
Confidence 32 36677777777777776544 234567777777663 223331 33444443 34444433
Q ss_pred CCCCCccCCCCccCceecccCcccCCCCC
Q 017094 296 FMALPGSLKDLEALETLAIRGCPKLSSLP 324 (377)
Q Consensus 296 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 324 (377)
...+| +..+++|+.|++++|..++.+|
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCccc--ccccccCCEEECCCCcccceec
Confidence 33333 3456777777777776555444
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=3.4e-21 Score=192.32 Aligned_cols=267 Identities=17% Similarity=0.137 Sum_probs=171.1
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~ 147 (377)
+++++|.+.++.+.... +..+.++++|++|++++|... ......+..+++|++|++++|.+..++ ..++.+++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELS---QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp TTCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred CcCcEEECCCCccCccC-HHHHhcccCcCEEECCCCccC---ccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 58999999988776542 567889999999999988654 222335788999999999999988775 5788999999
Q ss_pred eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhc--ccccccEeeecCcccccCc-ccCCCC----------
Q 017094 148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIR--YLVILRVFALTTKQKSLQE-SGIRSL---------- 214 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~--~l~~L~~L~l~~~~~~~~~-~~l~~l---------- 214 (377)
+|++++|......|..++++++|++|++++|......+..+. .+++|+.|++++|.+...+ ..+..+
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 999998755555566788899999999998744333344443 4578899999888776542 223222
Q ss_pred -----------------CCCCEEEccCCCCchhhHHhcccCcc--cchhccccCCCCc------cCCCccceEEeccccc
Q 017094 215 -----------------GSLRCLTISGCRDLEHLFEEIEQLSL--LRTLLIHSYDDRK------NTRPRLRRVFIKEITQ 269 (377)
Q Consensus 215 -----------------~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~ 269 (377)
++|+.|++++|......+..+..++. |+.|++++|.... ...++|++|+++++..
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 44556666665544444444555543 7777777765433 2235677777776644
Q ss_pred ccccchhhhhcCCCCccEEeecCCCCCC-----CCCc----cCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccC
Q 017094 270 LLELPQWLLQCCTDTLHTLVIGDCPNFM-----ALPG----SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGG 340 (377)
Q Consensus 270 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~-----~l~~----~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 340 (377)
....|..+ ..+++|++|++++|.... .+|. .+..+++|++|++++|......+..+..+++|++|++++
T Consensus 285 ~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 285 QHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp SEECTTTT--TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred CccChhhh--cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 43344444 555666666665542111 2222 344555666666665543333334455555555555555
Q ss_pred C
Q 017094 341 C 341 (377)
Q Consensus 341 c 341 (377)
|
T Consensus 363 n 363 (680)
T 1ziw_A 363 S 363 (680)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=5e-22 Score=178.89 Aligned_cols=231 Identities=16% Similarity=0.146 Sum_probs=186.2
Q ss_pred CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCcc
Q 017094 67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM 146 (377)
Q Consensus 67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L 146 (377)
.++.+++|.+.++.+.... ...+..+++|++|++++|..... ...+..+..+++|++|++++|.+..+|..+..+++|
T Consensus 26 ~~~~l~~L~L~~n~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCEE-EEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCCEEECCCCccCccC-HhHhhccccCCEEECCCCccCcc-cCcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 4568999999998877533 33578999999999999875421 111233557899999999999999998889999999
Q ss_pred ceEeccCCCcccccC--hhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc--CcccCCCCCCCCEEEc
Q 017094 147 RYLDLSRNSKIKKLP--KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL--QESGIRSLGSLRCLTI 222 (377)
Q Consensus 147 ~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l 222 (377)
++|++++| .+..++ ..+..+++|++|++++|......+..+..+++|+.|++++|.+.. .+..+..+++|+.|++
T Consensus 104 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 99999976 555555 468899999999999986666667778999999999999999875 5678899999999999
Q ss_pred cCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccch-hhhhcCCCCccEEeecCCCCCCCCCc
Q 017094 223 SGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQ-WLLQCCTDTLHTLVIGDCPNFMALPG 301 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~~l~~ 301 (377)
++|......+..+..+++|+.|++++|.... ++. .+ ..+++|++|++++|......+.
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------------~~~~~~--~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-------------------LDTFPY--KCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCSB-------------------CCSGGG--TTCTTCCEEECTTSCCCBCSSS
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccCc-------------------cChhhc--cCcccCCEeECCCCCCcccCHH
Confidence 9998766556778888999999998876432 222 33 6789999999999987777777
Q ss_pred cCCCCc-cCceecccCcccCC
Q 017094 302 SLKDLE-ALETLAIRGCPKLS 321 (377)
Q Consensus 302 ~~~~l~-~L~~L~l~~~~~~~ 321 (377)
.+..++ +|++|++++|+...
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEEC
T ss_pred HHHhhhccCCEEEccCCCeec
Confidence 888885 99999999986544
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=2.3e-21 Score=184.16 Aligned_cols=218 Identities=23% Similarity=0.222 Sum_probs=129.8
Q ss_pred CcccEEEeCCCccccC-CcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCch-hhcccccccEee
Q 017094 121 QFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFA 198 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~ 198 (377)
+++++|+|++|.+..+ +..+..+++|++|++++|......+..+..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence 3555555555555543 3445555555555555442222223445555555555555542 333332 245555555555
Q ss_pred ecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHH-hcccCcccchhccccCCCCc----cCCCccceEEecccccccc
Q 017094 199 LTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFE-EIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLE 272 (377)
Q Consensus 199 l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~ 272 (377)
+++|.+...+ ..+..+++|+.|++++|+....++. .+..+++|+.|++++|.... ...++|++|+++++.....
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence 5555555432 2445555555555555444443332 24455555555555554433 2234666666666544434
Q ss_pred cchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeeeccCCC
Q 017094 273 LPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 273 l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~c~ 342 (377)
.|..+ ..+++|++|++++|......+..+..+++|+.|+|++|. ++.+| ..+..+++|+.|++.+||
T Consensus 234 ~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 234 RPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred Ccccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 45556 788999999999987665667778899999999999985 45554 556789999999998886
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=3.4e-21 Score=182.31 Aligned_cols=219 Identities=21% Similarity=0.224 Sum_probs=124.5
Q ss_pred CcccEEEeCCCccccCC-cCcCCCCccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCch-hhcccccccEe
Q 017094 121 QFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVF 197 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L 197 (377)
.+++.|+|++|.+..++ ..+..+++|++|++++|. +..+ +..+..+++|++|++++| .+..+|. .+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 34555555555554332 345555555555555442 2222 234445555555555554 2333332 34555555555
Q ss_pred eecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHH-hcccCcccchhccccCCCCc----cCCCccceEEeccccccc
Q 017094 198 ALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFE-EIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLL 271 (377)
Q Consensus 198 ~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~ 271 (377)
++++|.+...+ ..+..+++|+.|++++|+....++. .+..+++|+.|++++|.... ...++|++|+++++....
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence 55555554332 2445555555555555444333332 34455555555555554333 223456666666653332
Q ss_pred ccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094 272 ELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA 343 (377)
Q Consensus 272 ~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 343 (377)
..|..+ ..+++|++|++++|......+..+..+++|++|+|++|......+..+..+++|+.|++.+||-
T Consensus 222 ~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 222 IRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred cChhhh--ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 334455 7788999999999876555677788899999999999854433335567889999999988863
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=7e-22 Score=181.62 Aligned_cols=250 Identities=18% Similarity=0.209 Sum_probs=127.6
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~ 147 (377)
+.+++|.+.++.+.... +..+.++++|++|++++|... ...+..+..+++|++|++++|.+..+|.. ++.+++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 45666666655554422 224556666666666655432 11223355556666666666666555543 55566666
Q ss_pred eEeccCCCcccccCh--hhcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccC-cccCCCCCCCCEEEcc
Q 017094 148 YLDLSRNSKIKKLPK--SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTIS 223 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~ 223 (377)
+|++++| .+..+|. .+..+++|++|++++|..+..+ +..+..+++|+.|++++|.+... +..+..+++|++|+++
T Consensus 128 ~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 128 FLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 6666654 3444444 4555666666666655333333 34455666666666666655533 3455556666666666
Q ss_pred CCCCchhhHHh-cccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCC----C
Q 017094 224 GCRDLEHLFEE-IEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFM----A 298 (377)
Q Consensus 224 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~----~ 298 (377)
+|.. ..++.. +..+++|+.|++++|........ .++. . ...+.++.++++++.... .
T Consensus 207 ~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------~l~~-~--~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 207 MKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS--------------ELST-G--ETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp CSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred CCcc-ccchhhhhhhcccccEEECCCCcccccccc--------------cccc-c--cccchhhccccccccccCcchhh
Confidence 6553 233322 23455666666655544331110 0000 0 223445555555543211 2
Q ss_pred CCccCCCCccCceecccCcccCCCCCcCC-CCCCCcCeeeccCCC
Q 017094 299 LPGSLKDLEALETLAIRGCPKLSSLPEDM-HHLTTLKLLAIGGCP 342 (377)
Q Consensus 299 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~c~ 342 (377)
+|.++..+++|++|++++| .++.+|..+ ..+++|++|++++|+
T Consensus 269 l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 4445556666666666665 334555443 566666666666664
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=8.6e-22 Score=181.02 Aligned_cols=245 Identities=14% Similarity=0.147 Sum_probs=152.3
Q ss_pred CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchh-hcccccccEee
Q 017094 121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFA 198 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~ 198 (377)
++|++|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 366666666666665544 5666666777777655322223445666666777777665 34444443 56666677777
Q ss_pred ecCcccccCcc--cCCCCCCCCEEEccCCCCchhh-HHhcccCcccchhccccCCCCc------cCCCccceEEeccccc
Q 017094 199 LTTKQKSLQES--GIRSLGSLRCLTISGCRDLEHL-FEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQ 269 (377)
Q Consensus 199 l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~ 269 (377)
+++|.+...+. .+..+++|+.|++++|+....+ +..++.+++|+.|++++|.... ...++|++|+++++.
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~- 209 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ- 209 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-
Confidence 77666665543 4566667777777666433333 3445666667777766665433 223466667776654
Q ss_pred ccccchhhhhcCCCCccEEeecCCCCCCCCCcc---CCCCccCceecccCcccCC----CCCcCCCCCCCcCeeeccCCC
Q 017094 270 LLELPQWLLQCCTDTLHTLVIGDCPNFMALPGS---LKDLEALETLAIRGCPKLS----SLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 270 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~---~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~c~ 342 (377)
+..++...+ ..+++|++|++++|......+.. ......++.+++.++.... .+|..+..+++|+.|++++|.
T Consensus 210 l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 210 HILLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp STTHHHHHH-HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred cccchhhhh-hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 345665443 45799999999998643322222 2246677888887764322 456677889999999999994
Q ss_pred CccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 343 ALSERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 343 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
++..+.. -+..+.++..+.+.++++.
T Consensus 289 -l~~i~~~----~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 289 -LKSVPDG----IFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp -CCCCCTT----TTTTCTTCCEEECCSSCBC
T ss_pred -CCccCHH----HHhcCCCCCEEEeeCCCcc
Confidence 4444332 1356788899999998876
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=2.5e-21 Score=183.86 Aligned_cols=226 Identities=21% Similarity=0.184 Sum_probs=160.1
Q ss_pred CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCc
Q 017094 67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKH 145 (377)
Q Consensus 67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~ 145 (377)
.++.+++|.+.++.+.... +..|..+++|+.|++++|.+. ...+..+..+++|++|+|++|.+..+|. .+..+++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCCCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCccC---CcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 4457888888877766543 456778888888888877553 2223457778888888888888877654 3777888
Q ss_pred cceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEeeecCcccccCcccCCCCCCCCEEEcc
Q 017094 146 MRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTIS 223 (377)
Q Consensus 146 L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~ 223 (377)
|++|++++| .+..+|. .+..+++|++|++++|..+..++. .+..+++|++|++++|.+... +.+..+++|+.|+++
T Consensus 149 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 149 LRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMS 226 (452)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECT
T ss_pred CCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECc
Confidence 888888866 4444443 577788888888887766666654 467788888888888887766 367778888888888
Q ss_pred CCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccC
Q 017094 224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSL 303 (377)
Q Consensus 224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 303 (377)
+|......+..+..+++|+.|++++|.... ..+..+ ..+++|+.|++++|......+..+
T Consensus 227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSL------------------IERNAF--DGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp TSCCSEECGGGGTTCTTCCEEECTTSCCCE------------------ECTTTT--TTCTTCCEEECCSSCCSCCCTTSS
T ss_pred CCcCcccCcccccCccCCCEEEeCCCcCce------------------ECHHHh--cCCCCCCEEECCCCcCCccChHHh
Confidence 877666556677777788888877765432 223333 667888888888875433333456
Q ss_pred CCCccCceecccCcc
Q 017094 304 KDLEALETLAIRGCP 318 (377)
Q Consensus 304 ~~l~~L~~L~l~~~~ 318 (377)
..+++|+.|++++|+
T Consensus 287 ~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 287 TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEccCCC
Confidence 778888888888875
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=182.53 Aligned_cols=227 Identities=19% Similarity=0.156 Sum_probs=168.0
Q ss_pred CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCc
Q 017094 67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKH 145 (377)
Q Consensus 67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~ 145 (377)
.++.++.|.+.++.+.... +..+..+++|++|++++|.... ..+..+..+++|++|+|++|.+..++. .+..+++
T Consensus 62 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp CCTTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSCCCE---ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCcCCc---cChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 4467888888888776653 4568888999999998886542 223457788899999999998887765 5788899
Q ss_pred cceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCch-hhcccccccEeeecCcccccCcccCCCCCCCCEEEcc
Q 017094 146 MRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTIS 223 (377)
Q Consensus 146 L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~ 223 (377)
|++|++++| .+..++ ..+..+++|++|++++|..+..++. .+..+++|++|++++|.++..+ .+..+++|+.|+++
T Consensus 138 L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 138 LKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLS 215 (440)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECT
T ss_pred CceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECC
Confidence 999999876 455544 4677888999999988767776655 5788889999999998888774 68888899999999
Q ss_pred CCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccC
Q 017094 224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSL 303 (377)
Q Consensus 224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 303 (377)
+|......+..+..+++|+.|++++|.... ..+..+ ..+++|+.|++++|.....-+..+
T Consensus 216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQV------------------IERNAF--DNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCE------------------ECTTSS--TTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCccCccChhhhccCccCCEEECCCCceeE------------------EChhhh--cCCCCCCEEECCCCCCCccChhHh
Confidence 887666556677888888888888775432 112223 566778888888765433334456
Q ss_pred CCCccCceecccCccc
Q 017094 304 KDLEALETLAIRGCPK 319 (377)
Q Consensus 304 ~~l~~L~~L~l~~~~~ 319 (377)
..+++|+.|++++|+.
T Consensus 276 ~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSCTTCCEEECCSSCE
T ss_pred ccccCCCEEEcCCCCc
Confidence 6778888888877753
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=8.3e-22 Score=177.98 Aligned_cols=250 Identities=15% Similarity=0.150 Sum_probs=151.1
Q ss_pred hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc--cCCcCcC-------CCCccceEeccCCCccccc
Q 017094 90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE--VCPRKMG-------NLKHMRYLDLSRNSKIKKL 160 (377)
Q Consensus 90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~l~~~~~-------~l~~L~~L~l~~~~~~~~l 160 (377)
+...++|+.|++++|.. ..... +... |+.|+++++.+. .+|..+. .+++|++|++++|.....+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~----~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQ----FTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHH----HHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred EccCCCceeEeeccccc-ccHHH----HHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 34455666666666654 11111 2211 777778777774 3455444 6788888888876544466
Q ss_pred Chhh--cCCCcccEEeccCccccccCchhhccc-----ccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchh--
Q 017094 161 PKSI--CELQSLQTLDLEGCLELEELPKDIRYL-----VILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEH-- 230 (377)
Q Consensus 161 ~~~~--~~l~~L~~L~l~~~~~~~~~p~~l~~l-----~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~-- 230 (377)
|..+ ..+++|++|++++|. +...|..+..+ ++|++|++++|.+...+ ..++.+++|+.|++++|+..+.
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 7665 778888888888864 44447666666 78888888888887665 6778888888888888876544
Q ss_pred hHHhc--ccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCCc
Q 017094 231 LFEEI--EQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDLE 307 (377)
Q Consensus 231 ~~~~l--~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~ 307 (377)
.+..+ +.+++|+.|++++|.... +..++..++ ..+++|++|++++|......| ..+..++
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~----------------~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMET----------------PSGVCSALA-AARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCC----------------HHHHHHHHH-HTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred HHHHHHhccCCCCCEEECCCCcCcc----------------hHHHHHHHH-hcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 34444 677778888877765431 112222221 345666666666655333332 2334556
Q ss_pred cCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094 308 ALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS 374 (377)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (377)
+|++|++++|. ++.+|..+. ++|++|++++|. ++..+. +..+.+++.+.+.++.++.
T Consensus 254 ~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~------~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-LDRNPS------PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC-CCSCCC------TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCc-cChhhhhcc--CCceEEECCCCC-CCCChh------HhhCCCCCEEeccCCCCCC
Confidence 66666666653 345565544 566666666663 333211 3345556666666666654
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.1e-22 Score=184.23 Aligned_cols=244 Identities=14% Similarity=0.088 Sum_probs=159.2
Q ss_pred hhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCC
Q 017094 88 SLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICEL 167 (377)
Q Consensus 88 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l 167 (377)
..+..+++|++|++++|... ...+..+..+++|++|++++|.+...++ +..+++|++|++++| .+..++ ..
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~ 98 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VG 98 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----EC
T ss_pred HHhccCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CC
Confidence 34455567777777776543 2233456777777777777777765543 667777777777765 444443 23
Q ss_pred CcccEEeccCccccccCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhc-ccCcccchhc
Q 017094 168 QSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEI-EQLSLLRTLL 245 (377)
Q Consensus 168 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~ 245 (377)
++|++|++++|. +..++. ..+++|+.|++++|.++..+ ..+..+++|+.|++++|......+..+ ..+++|+.|+
T Consensus 99 ~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 677777777763 333332 23566777777777776553 356667777777777776554444444 3567777777
Q ss_pred cccCCCCc----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccC-
Q 017094 246 IHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL- 320 (377)
Q Consensus 246 l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~- 320 (377)
+++|.... ...++|++|+++++. +..+|..+ ..+++|++|++++|. +..+|..+..+++|+.|++++|+..
T Consensus 176 L~~N~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~--~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSC-CCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred CCCCcCcccccccccccCCEEECCCCc-CCcchhhh--cccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccC
Confidence 77776543 225567777777763 44566555 667888888888875 5567777778888888888888655
Q ss_pred CCCCcCCCCCCCcCeeeccCCCCcccc
Q 017094 321 SSLPEDMHHLTTLKLLAIGGCPALSER 347 (377)
Q Consensus 321 ~~~~~~l~~l~~L~~L~l~~c~~l~~~ 347 (377)
..+|..+..+++|+.+++.+|+.++..
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cCHHHHHhccccceEEECCCchhccCC
Confidence 355666677788888888776666554
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.3e-20 Score=166.25 Aligned_cols=220 Identities=19% Similarity=0.190 Sum_probs=166.0
Q ss_pred eEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCCCcccEEec
Q 017094 97 RTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDL 175 (377)
Q Consensus 97 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 175 (377)
++++.+++..... + ....++|++|+++++.+..++ ..+..+++|++|++++|......|..+..+++|++|++
T Consensus 14 ~~~~c~~~~l~~i----p--~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAV----P--VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSC----C--TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccC----C--cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 5667666543321 1 123468999999999998776 46889999999999977433344778889999999999
Q ss_pred cCccccccC-chhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc
Q 017094 176 EGCLELEEL-PKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK 253 (377)
Q Consensus 176 ~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 253 (377)
++|..+..+ |..+..+++|++|++++|.+... +..+..+++|+.|++++|......+..++.+++|+.|++++|...
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 166 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS- 166 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-
Confidence 998646665 67788999999999999988866 456788999999999998765444445777888888888876532
Q ss_pred cCCCccceEEecccccccccchh-hhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCC-cCCCCCC
Q 017094 254 NTRPRLRRVFIKEITQLLELPQW-LLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLP-EDMHHLT 331 (377)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~ 331 (377)
.++.. + ..+++|++|++++|......|..+..+++|++|++++|.. +.++ ..+..++
T Consensus 167 ------------------~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~ 225 (285)
T 1ozn_A 167 ------------------SVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLR 225 (285)
T ss_dssp ------------------EECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCHHHHTTCT
T ss_pred ------------------ccCHHHh--cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC-CcCCHHHcccCc
Confidence 34432 3 5678899999998876555678888899999999998854 4444 4578889
Q ss_pred CcCeeeccCCCCc
Q 017094 332 TLKLLAIGGCPAL 344 (377)
Q Consensus 332 ~L~~L~l~~c~~l 344 (377)
+|+.|++++|+-.
T Consensus 226 ~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 226 ALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCEE
T ss_pred ccCEEeccCCCcc
Confidence 9999999888743
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.2e-20 Score=170.81 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=181.8
Q ss_pred ceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094 96 LRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD 174 (377)
Q Consensus 96 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 174 (377)
++..+++.+ .........+..+++|++|++++|.+..++ ..+..+++|++|++++| .+...++ +..+++|++|+
T Consensus 12 l~i~~ls~~---~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~ 86 (317)
T 3o53_A 12 YKIEKVTDS---SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLD 86 (317)
T ss_dssp EEEESCCTT---THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEE
T ss_pred eeEeecccc---chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEE
Confidence 334444544 334555566778889999999999998775 57899999999999987 4554444 88999999999
Q ss_pred ccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-
Q 017094 175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK- 253 (377)
Q Consensus 175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~- 253 (377)
+++| .+..++ .+++|+.|++++|.+...+. ..+++|+.|++++|......+..++.+++|+.|++++|....
T Consensus 87 Ls~n-~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 87 LNNN-YVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CCSS-EEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CcCC-cccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 9997 455444 45899999999999887643 347889999999998766555678889999999999987665
Q ss_pred ------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCC
Q 017094 254 ------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM 327 (377)
Q Consensus 254 ------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l 327 (377)
...++|++|+++++. +..++.. ..+++|++|++++|. +..+|..+..+++|++|++++| .++.+|..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 233 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNF-IYDVKGQ---VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL 233 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSC-CCEEECC---CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTC
T ss_pred cHHHHhhccCcCCEEECCCCc-Ccccccc---cccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHh
Confidence 134789999999875 4455443 347899999999976 5566767888999999999998 566788888
Q ss_pred CCCCCcCeeeccCCCCc
Q 017094 328 HHLTTLKLLAIGGCPAL 344 (377)
Q Consensus 328 ~~l~~L~~L~l~~c~~l 344 (377)
..+++|+.|++++|+-.
T Consensus 234 ~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCTTCCEEECTTCCCB
T ss_pred hcCCCCCEEEccCCCcc
Confidence 89999999999998754
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.7e-20 Score=184.00 Aligned_cols=137 Identities=16% Similarity=0.209 Sum_probs=112.0
Q ss_pred CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCC
Q 017094 66 SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLK 144 (377)
Q Consensus 66 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~ 144 (377)
..|+.+++|+++++.+.... +..|.++++|++|++++|.+.. ..+.+|..+++|++|+|++|.+..+|. .+.+++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~---i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCcCCC---cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 45678999999999887653 4579999999999999986542 233468899999999999999998875 589999
Q ss_pred ccceEeccCCCcccccCh-hhcCCCcccEEeccCccccc-cCchhhcccccccEeeecCcccccC
Q 017094 145 HMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELE-ELPKDIRYLVILRVFALTTKQKSLQ 207 (377)
Q Consensus 145 ~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~ 207 (377)
+|++|++++| .+..+|+ .++++++|++|++++|.... ..|..+..+++|++|++++|.++..
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 9999999987 5666654 58899999999999985333 3578889999999999999877643
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=1.6e-20 Score=167.35 Aligned_cols=206 Identities=23% Similarity=0.241 Sum_probs=150.3
Q ss_pred cCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccceEeccCCCccccc-ChhhcCCCcc
Q 017094 93 LGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSL 170 (377)
Q Consensus 93 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L 170 (377)
.+++++|+++++.... ..+..+..+++|++|++++|.+..+ |..+..+++|++|++++|..+..+ |..+..+++|
T Consensus 31 ~~~l~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCcCCc---cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 4688999998876542 2234577888999999999988866 677888999999999977546655 6678888999
Q ss_pred cEEeccCccccccCchhhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccC
Q 017094 171 QTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSY 249 (377)
Q Consensus 171 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 249 (377)
++|++++|......|..+..+++|++|++++|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 999999875444446678889999999999998887653 4788899999999988754433345777888888888777
Q ss_pred CCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCC
Q 017094 250 DDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLS 321 (377)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 321 (377)
.... ..|..+ ..+++|++|++++|......+..+..+++|++|++++|+...
T Consensus 188 ~l~~------------------~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 188 RVAH------------------VHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCCE------------------ECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccc------------------cCHhHc--cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 5432 224444 566778888888765433333456777888888888775543
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=3.3e-22 Score=190.34 Aligned_cols=221 Identities=19% Similarity=0.197 Sum_probs=123.2
Q ss_pred CCcEEEEEecccccc---chhhhhcccCCceEEEeecCCchhhHHHHHHHhhccC----cccEEEeCCCccc-----cCC
Q 017094 70 RVRHLSFAAANALRN---DFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQ----FLRVLNLRESALE-----VCP 137 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~~~-----~l~ 137 (377)
++++|.+.++.+... .++..+..+++|++|++++|... ..........+. +|++|++++|.+. .++
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 677777777765542 34555666777777777776543 222223333344 5777777777765 345
Q ss_pred cCcCCCCccceEeccCCCcccccChhhc-----CCCcccEEeccCccccc----cCchhhcccccccEeeecCcccccCc
Q 017094 138 RKMGNLKHMRYLDLSRNSKIKKLPKSIC-----ELQSLQTLDLEGCLELE----ELPKDIRYLVILRVFALTTKQKSLQE 208 (377)
Q Consensus 138 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~-----~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~ 208 (377)
..+..+++|++|++++|......+..+. ..++|++|++++|.... .++..+..+++|++|++++|.+....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 6667777777777776542222122121 23467777777663322 23444556677777777776654321
Q ss_pred -ccCC-----CCCCCCEEEccCCCCch----hhHHhcccCcccchhccccCCCCc-----------cCCCccceEEeccc
Q 017094 209 -SGIR-----SLGSLRCLTISGCRDLE----HLFEEIEQLSLLRTLLIHSYDDRK-----------NTRPRLRRVFIKEI 267 (377)
Q Consensus 209 -~~l~-----~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~-----------~~~~~L~~L~l~~~ 267 (377)
..+. ..++|+.|++++|.... .++..+..+++|+.|++++|.... ...++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 1111 24467777777665443 245555666677777776665433 12456667776666
Q ss_pred ccccc----cchhhhhcCCCCccEEeecCCC
Q 017094 268 TQLLE----LPQWLLQCCTDTLHTLVIGDCP 294 (377)
Q Consensus 268 ~~~~~----l~~~~~~~~~~~L~~L~l~~~~ 294 (377)
..... ++..+ ..+++|++|++++|.
T Consensus 267 ~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 267 GITAKGCGDLCRVL--RAKESLKELSLAGNE 295 (461)
T ss_dssp CCCHHHHHHHHHHH--HHCTTCCEEECTTCC
T ss_pred CCCHHHHHHHHHHH--hhCCCcceEECCCCC
Confidence 32211 34443 445666666666653
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=1.2e-21 Score=186.50 Aligned_cols=271 Identities=18% Similarity=0.152 Sum_probs=190.0
Q ss_pred CCcEEEEEecccccc---chhhhhcccCCceEEEeecCCchhh-HHHHHHH-hhccCcccEEEeCCCcccc-----CCcC
Q 017094 70 RVRHLSFAAANALRN---DFSSLLSYLGRLRTIFFSTDDEKTS-QSFVESC-FSKSQFLRVLNLRESALEV-----CPRK 139 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~-~~~~~~L~~L~L~~~~~~~-----l~~~ 139 (377)
++++|.+.++.+... .++..+..+++|++|++++|..... ...+... ....++|++|++++|.+.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 688888888876642 3466778888899999888865421 1112222 2235678999998888763 3555
Q ss_pred cCCCCccceEeccCCCcccccChhhc-----CCCcccEEeccCccccc----cCchhhcccccccEeeecCcccccC---
Q 017094 140 MGNLKHMRYLDLSRNSKIKKLPKSIC-----ELQSLQTLDLEGCLELE----ELPKDIRYLVILRVFALTTKQKSLQ--- 207 (377)
Q Consensus 140 ~~~l~~L~~L~l~~~~~~~~l~~~~~-----~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~--- 207 (377)
+..+++|++|++++|......+..+. ..++|++|++++|.... .++..+..+++|++|++++|.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 66778999999987743222222232 25689999999874333 2566778889999999999977643
Q ss_pred ---cccCCCCCCCCEEEccCCCCchh----hHHhcccCcccchhccccCCCCc-----------cCCCccceEEeccccc
Q 017094 208 ---ESGIRSLGSLRCLTISGCRDLEH----LFEEIEQLSLLRTLLIHSYDDRK-----------NTRPRLRRVFIKEITQ 269 (377)
Q Consensus 208 ---~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~-----------~~~~~L~~L~l~~~~~ 269 (377)
+.....+++|+.|++++|..... ++..+..+++|++|++++|.... ...++|++|++++|..
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 12234688999999999876543 56677789999999999987643 2336899999999864
Q ss_pred ccc----cchhhhhcCCCCccEEeecCCCCCCCCCcc----CC-CCccCceecccCcccCC----CCCcCCCCCCCcCee
Q 017094 270 LLE----LPQWLLQCCTDTLHTLVIGDCPNFMALPGS----LK-DLEALETLAIRGCPKLS----SLPEDMHHLTTLKLL 336 (377)
Q Consensus 270 ~~~----l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~----~~-~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L 336 (377)
... ++.++ ..+++|++|++++|...+..+.. +. ..++|++|++++|.... .+|..+..+++|++|
T Consensus 326 ~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 326 TAACCSHFSSVL--AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp BGGGHHHHHHHH--HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred chHHHHHHHHHH--hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 332 45555 67799999999998532221222 22 26799999999995443 567777788999999
Q ss_pred eccCCC
Q 017094 337 AIGGCP 342 (377)
Q Consensus 337 ~l~~c~ 342 (377)
++++|+
T Consensus 404 ~l~~N~ 409 (461)
T 1z7x_W 404 DLSNNC 409 (461)
T ss_dssp ECCSSS
T ss_pred ECCCCC
Confidence 999985
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3.9e-21 Score=183.95 Aligned_cols=229 Identities=14% Similarity=0.095 Sum_probs=134.5
Q ss_pred CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094 95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD 174 (377)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 174 (377)
+|++|++++|.+.. ..+..+..+++|++|+|++|.+...++ +..+++|++|++++| .+..+|. .++|++|+
T Consensus 35 ~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 66666666664431 223345666666666666666654443 666666666666654 3444432 25666666
Q ss_pred ccCccccccCchhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcc-cCcccchhccccCCCC
Q 017094 175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIE-QLSLLRTLLIHSYDDR 252 (377)
Q Consensus 175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~ 252 (377)
+++|. +..++. ..+++|+.|++++|.++.. +..++.+++|+.|++++|......+..+. .+++|+.|++++|...
T Consensus 106 L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 66653 333322 2345666666666666654 33556666666666666665554454443 5666666666666543
Q ss_pred c----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccC-CCCCcCC
Q 017094 253 K----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL-SSLPEDM 327 (377)
Q Consensus 253 ~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~l 327 (377)
. ...++|+.|+++++. +..+|..+ ..+++|+.|++++|. +..+|..+..+++|+.|++++|+.. ..+|..+
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVKGQVVFAKLKTLDLSSNK-LAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEECCCCCTTCCEEECCSSC-CCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccccccCCCCCEEECCCCC-CCCCCHhH--cCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 3 224456666666553 33455554 566777777777755 4456666777777777777777554 2445555
Q ss_pred CCCCCcCeeecc
Q 017094 328 HHLTTLKLLAIG 339 (377)
Q Consensus 328 ~~l~~L~~L~l~ 339 (377)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 666666666664
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=4.6e-21 Score=173.10 Aligned_cols=229 Identities=17% Similarity=0.153 Sum_probs=162.0
Q ss_pred hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCc-ccccChhhc-------CCCcccEEeccCccccccCchhh-
Q 017094 118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSK-IKKLPKSIC-------ELQSLQTLDLEGCLELEELPKDI- 188 (377)
Q Consensus 118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~l~~~~~-------~l~~L~~L~l~~~~~~~~~p~~l- 188 (377)
...++|++|++++|.+ .+|..+... |+.|++++|.. ...+|..+. .+++|++|++++|...+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3456788888888888 777655543 88888887643 124565554 68899999999886555777766
Q ss_pred -cccccccEeeecCcccccCcccCCCC-----CCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceE
Q 017094 189 -RYLVILRVFALTTKQKSLQESGIRSL-----GSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRV 262 (377)
Q Consensus 189 -~~l~~L~~L~l~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L 262 (377)
..+++|++|++++|.++..+..++.+ ++|++|++++|......+..++.+++|+.|++++|....
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------- 187 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--------- 187 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH---------
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc---------
Confidence 88899999999999888766555555 889999999888765555678888888888888775322
Q ss_pred EecccccccccchhhhhcCCCCccEEeecCCCCCCCC---C-ccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeee
Q 017094 263 FIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL---P-GSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLA 337 (377)
Q Consensus 263 ~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l---~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ 337 (377)
...++..+....+++|++|++++|. +..+ + ..+..+++|++|++++|......| ..+..+++|++|+
T Consensus 188 -------~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 188 -------ERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259 (312)
T ss_dssp -------HHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred -------chHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence 0012222222578999999999986 4432 2 223578999999999996555443 4456789999999
Q ss_pred ccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094 338 IGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS 374 (377)
Q Consensus 338 l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (377)
+++|. ++.++.. +. .+++.+.+.++.+..
T Consensus 260 Ls~N~-l~~ip~~-----~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 260 LSFTG-LKQVPKG-----LP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp CTTSC-CSSCCSS-----CC--SEEEEEECCSSCCCS
T ss_pred CCCCc-cChhhhh-----cc--CCceEEECCCCCCCC
Confidence 99995 4444332 11 678888888877764
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.7e-19 Score=160.87 Aligned_cols=102 Identities=26% Similarity=0.320 Sum_probs=46.9
Q ss_pred cccEEEeCCCccccC-CcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeec
Q 017094 122 FLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT 200 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 200 (377)
.++.|++++|.+..+ +..+..+++|++|++++| .+..++.. +.+++|++|++++| .+..+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence 445555555554433 233444555555555543 33333332 34445555555543 333444444445555555555
Q ss_pred CcccccCc-ccCCCCCCCCEEEccCCC
Q 017094 201 TKQKSLQE-SGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 201 ~~~~~~~~-~~l~~l~~L~~L~l~~~~ 226 (377)
+|.++..+ ..+..+++|+.|++++|+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 55444433 234444455555554443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=6.5e-20 Score=175.47 Aligned_cols=218 Identities=12% Similarity=0.098 Sum_probs=176.4
Q ss_pred HHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcc
Q 017094 112 FVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRY 190 (377)
Q Consensus 112 ~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 190 (377)
.+......+++|++|+|++|.+..++ ..+..+++|++|++++|. +...++ +..+++|++|++++| .+..+| .
T Consensus 25 ~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~----~ 97 (487)
T 3oja_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELL----V 97 (487)
T ss_dssp HHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEE----E
T ss_pred HHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCC----C
Confidence 33334455669999999999998764 689999999999999874 554444 889999999999998 455554 3
Q ss_pred cccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-------cCCCccceEE
Q 017094 191 LVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-------NTRPRLRRVF 263 (377)
Q Consensus 191 l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~L~~L~ 263 (377)
.++|+.|++++|.+...+. ..+++|+.|++++|......+..++.+++|+.|++++|.... ...++|++|+
T Consensus 98 ~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4899999999999987643 356899999999998777667778899999999999997665 1357899999
Q ss_pred ecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094 264 IKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA 343 (377)
Q Consensus 264 l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 343 (377)
++++. +..++.. ..+++|++|++++|. +..+|..+..+++|+.|++++|. ++.+|..+..+++|+.|++++|+-
T Consensus 176 Ls~N~-l~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 176 LQYNF-IYDVKGQ---VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CTTSC-CCEEECC---CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCB
T ss_pred cCCCc-ccccccc---ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCC
Confidence 99985 4455443 358999999999976 55677678899999999999984 566888889999999999999975
Q ss_pred c
Q 017094 344 L 344 (377)
Q Consensus 344 l 344 (377)
.
T Consensus 250 ~ 250 (487)
T 3oja_A 250 H 250 (487)
T ss_dssp C
T ss_pred c
Confidence 5
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=4.8e-19 Score=173.23 Aligned_cols=234 Identities=20% Similarity=0.180 Sum_probs=148.0
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
++++.|.+.++.+... +. .+++|++|++++|.+... +. .+++|++|++++|.+..+|. .+++|++
T Consensus 61 ~~L~~L~L~~N~l~~l--p~---~l~~L~~L~Ls~N~l~~l----p~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL--PA---LPPELRTLEVSGNQLTSL----PV---LPPGLLELSIFSNPLTHLPA---LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSCC--CC---CCTTCCEEEECSCCCSCC----CC---CCTTCCEEEECSCCCCCCCC---CCTTCCE
T ss_pred CCCcEEEecCCCCCCC--CC---cCCCCCEEEcCCCcCCcC----CC---CCCCCCEEECcCCcCCCCCC---CCCCcCE
Confidence 5667777776655532 22 456677777776654321 11 45667777777776666655 4566777
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL 228 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 228 (377)
|++++| .+..+|.. +++|++|++++| .+..+|. .+++|+.|++++|.++..+ ..+++|+.|++++|...
T Consensus 126 L~L~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 126 LWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp EECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred EECCCC-CCCcCCCC---CCCCCEEECcCC-cCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC
Confidence 777654 45555543 366777777765 4444543 2456677777777766654 44577777777776643
Q ss_pred hhhHHhcccCcccchhccccCCCCc--cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCC
Q 017094 229 EHLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL 306 (377)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l 306 (377)
.++. .+++|+.|++++|.... ..+++|+.|+++++ .+..+| ..+++|++|++++|. +..+|. .+
T Consensus 195 -~l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N~-L~~lp~---~~ 260 (622)
T 3g06_A 195 -SLPT---LPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGNR-LTSLPM---LP 260 (622)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC---CC
T ss_pred -CCCC---ccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCCC-CCcCCc---cc
Confidence 2322 24567777777776544 22357888888776 444555 445778888888764 556665 56
Q ss_pred ccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094 307 EALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA 343 (377)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 343 (377)
++|++|++++| .++.+|..+..+++|+.|++++|+-
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 77888888877 4557777777788888888888763
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=5.7e-19 Score=167.36 Aligned_cols=177 Identities=19% Similarity=0.285 Sum_probs=99.2
Q ss_pred CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCcc
Q 017094 67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM 146 (377)
Q Consensus 67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L 146 (377)
.++++++|.+.++.+.. ++. ..++|++|++++|...... ...++|++|++++|.+..+| .++.+++|
T Consensus 89 ~~~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~~l~-------~~~~~L~~L~L~~n~l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQLEKLP-ELQNSSFL 155 (454)
T ss_dssp CCTTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSCCC-------SCCTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred CcCCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccCccc-------CCCCCCCEEECcCCCCCCCc-ccCCCCCC
Confidence 34577777777766554 222 2367777777766543211 01156777777777777666 46777777
Q ss_pred ceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094 147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 226 (377)
++|++++| .+..+|..+ .+|++|++++| .+..+| .++.+++|++|++++|.+...+.. .++|+.|++++|.
T Consensus 156 ~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 156 KIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNI 226 (454)
T ss_dssp CEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC
T ss_pred CEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCc
Confidence 77777765 444555432 46677777665 344455 466666666666666666554321 1355666665554
Q ss_pred CchhhHHhcccCcccchhccccCCCCc--cCCCccceEEeccc
Q 017094 227 DLEHLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEI 267 (377)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~ 267 (377)
.. .+| .++.+++|+.|++++|.... ..+++|++|+++++
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 267 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSS
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCC
Confidence 32 333 25555556666555554333 12234455554443
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.5e-20 Score=171.47 Aligned_cols=215 Identities=17% Similarity=0.145 Sum_probs=130.6
Q ss_pred CceEEEeecCCchhhHHHHHHHhhcc--CcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccc-cChhhcCCCccc
Q 017094 95 RLRTIFFSTDDEKTSQSFVESCFSKS--QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKK-LPKSICELQSLQ 171 (377)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~ 171 (377)
.+++++++++... +..+..+ ++++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 3566666665432 1223333 567777777777665555566677777777776542222 566666777777
Q ss_pred EEeccCccccccCchhhcccccccEeeecCc-cccc--CcccCCCCCCCCEEEccCC-CCchh-hHHhcccCc-ccchhc
Q 017094 172 TLDLEGCLELEELPKDIRYLVILRVFALTTK-QKSL--QESGIRSLGSLRCLTISGC-RDLEH-LFEEIEQLS-LLRTLL 245 (377)
Q Consensus 172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~-~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~ 245 (377)
+|++++|......+..+..+++|++|++++| .++. .+..+..+++|++|++++| ..... ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 7777776444455666667777777777776 4442 2334566777777777777 44332 455566677 777777
Q ss_pred cccCCC-Cc--------cCCCccceEEecccccc-cccchhhhhcCCCCccEEeecCCCCCC-CCCccCCCCccCceecc
Q 017094 246 IHSYDD-RK--------NTRPRLRRVFIKEITQL-LELPQWLLQCCTDTLHTLVIGDCPNFM-ALPGSLKDLEALETLAI 314 (377)
Q Consensus 246 l~~~~~-~~--------~~~~~L~~L~l~~~~~~-~~l~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l 314 (377)
+++|.. .. ...++|++|++++|..+ ...+..+ ..+++|++|++++|..+. .....+..+++|++|++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 777631 11 23456666666666533 2344444 566888888888875221 11124567888888888
Q ss_pred cCc
Q 017094 315 RGC 317 (377)
Q Consensus 315 ~~~ 317 (377)
++|
T Consensus 280 ~~~ 282 (336)
T 2ast_B 280 FGI 282 (336)
T ss_dssp TTS
T ss_pred cCc
Confidence 887
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=8.1e-19 Score=171.64 Aligned_cols=255 Identities=18% Similarity=0.175 Sum_probs=199.7
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL 149 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 149 (377)
.++.|.+.++.+.. +|..+. ++|+.|++++|.+... +. .+++|++|++++|.++.+|. .+++|++|
T Consensus 41 ~l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~~l----p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTSL----PA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCSCC----CC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCCCC----CC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 58889998887764 343343 8999999999876522 11 57899999999999998887 67999999
Q ss_pred eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094 150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE 229 (377)
Q Consensus 150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 229 (377)
++++| .+..+|. .+++|++|++++| .+..+|.. +++|++|++++|.++..+. .+++|+.|++++|....
T Consensus 107 ~Ls~N-~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 107 SIFSN-PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp EECSC-CCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred ECcCC-cCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC
Confidence 99976 6777776 6789999999987 56777764 4899999999999887654 35789999999987543
Q ss_pred hhHHhcccCcccchhccccCCCCc--cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCc
Q 017094 230 HLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLE 307 (377)
Q Consensus 230 ~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~ 307 (377)
++ ..+++|+.|++++|.... ...++|+.|+++++ .+..+| ..+++|++|++++|. +..+| ..++
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N-~l~~l~-----~~~~~L~~L~Ls~N~-L~~lp---~~l~ 241 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSLP-----ALPSGLKELIVSGNR-LTSLP---VLPS 241 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCC-----CCCTTCCEEECCSSC-CSCCC---CCCT
T ss_pred -Cc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCC-cccccC-----CCCCCCCEEEccCCc-cCcCC---CCCC
Confidence 44 457899999999998765 34578999999987 444666 345899999999975 56677 4678
Q ss_pred cCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094 308 ALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK 373 (377)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (377)
+|++|++++| .++.+|. .+++|+.|++++| .++.++ ..+..+.++..+.+.++.+.
T Consensus 242 ~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp-----~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 242 ELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLP-----ESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCC-----GGGGGSCTTCEEECCSCCCC
T ss_pred cCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCC-----HHHhhccccCEEEecCCCCC
Confidence 9999999998 5667886 6789999999998 455443 23556788888888888775
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=2.5e-19 Score=158.74 Aligned_cols=128 Identities=22% Similarity=0.147 Sum_probs=55.0
Q ss_pred cccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094 122 FLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL 199 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 199 (377)
+|++|++++|.+..++. .+..+++|++|++++| .+..++ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34444444444443332 3444444444444443 222222 23444444455554444222222233444444555555
Q ss_pred cCcccccCc-ccCCCCCCCCEEEccCCCCch-hhHHhcccCcccchhccccCC
Q 017094 200 TTKQKSLQE-SGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLIHSYD 250 (377)
Q Consensus 200 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~ 250 (377)
++|.+...+ ..++.+++|++|++++|.... .++..++.+++|+.|++++|.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 444444332 134444555555555444322 123444444445555444443
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.2e-18 Score=153.79 Aligned_cols=195 Identities=22% Similarity=0.270 Sum_probs=86.5
Q ss_pred ccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchh-hcccccccEeeec
Q 017094 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFALT 200 (377)
Q Consensus 123 L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~ 200 (377)
.+.++++++.+..+|..+. ++|++|++++| .+..++ ..+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 3444555544444444332 34555555543 233332 23444555555555544 23333322 2445555555555
Q ss_pred CcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhh
Q 017094 201 TKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQ 279 (377)
Q Consensus 201 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~ 279 (377)
+|.+...+ ..+..+++|+.|++++|......+..++.+++|+.|++++|... .++...+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~~~~~- 153 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------------------SLPKGVF- 153 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTT-
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-------------------ccCHhHc-
Confidence 55544433 23344555555555554433322233444444555544444321 2222111
Q ss_pred cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCc-CCCCCCCcCeeeccCCC
Q 017094 280 CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPE-DMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~c~ 342 (377)
..+++|++|++++|......+..+..+++|++|++++|. ++.+|. .+..+++|+.|++.+||
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 344555555555543222222234555556666665552 333332 34455556666655554
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.2e-18 Score=172.10 Aligned_cols=108 Identities=21% Similarity=0.295 Sum_probs=87.6
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCcc
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHM 146 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L 146 (377)
-+++++|++.++.+.... +.+|.++++|++|++++|.... ..+..|..+++|++|++++|.+..++. .++.+++|
T Consensus 75 l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~---l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQS---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp CTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCE---ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred CCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcCCC---CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 368999999998877643 4578999999999999987642 233468899999999999999998865 58999999
Q ss_pred ceEeccCCCccc-ccChhhcCCCcccEEeccCcc
Q 017094 147 RYLDLSRNSKIK-KLPKSICELQSLQTLDLEGCL 179 (377)
Q Consensus 147 ~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~ 179 (377)
++|++++|.... .+|..++.+++|++|++++|.
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 999999874332 457778889999999998764
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.2e-18 Score=165.16 Aligned_cols=237 Identities=19% Similarity=0.203 Sum_probs=114.9
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
+.+++|.+.++.+.... . ..++|++|++++|.... ++ .+..+++|++|++++|.+..+|..+ .+|++
T Consensus 111 ~~L~~L~l~~n~l~~l~--~---~~~~L~~L~L~~n~l~~----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~ 177 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALS--D---LPPLLEYLGVSNNQLEK----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEF 177 (454)
T ss_dssp TTCCEEECCSSCCSCCC--S---CCTTCCEEECCSSCCSS----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCE
T ss_pred CCCcEEECCCCccCccc--C---CCCCCCEEECcCCCCCC----Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccE
Confidence 45566666555443311 0 01455566665554331 11 2555555566666555555544332 35555
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCcc-------------------ccccCchhhcccccccEeeecCcccccCcc
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCL-------------------ELEELPKDIRYLVILRVFALTTKQKSLQES 209 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------------~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~ 209 (377)
|++++| .+..+| .++.+++|++|++++|. .+..+| .++.+++|++|++++|.+...+.
T Consensus 178 L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 178 IAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp EECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred EECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccc
Confidence 555544 333344 34555555555555542 222333 24444444444444444443322
Q ss_pred cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc--cCCCccceEEecccccccccchhhhhcCCCCccE
Q 017094 210 GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHT 287 (377)
Q Consensus 210 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~ 287 (377)
. +++|+.|++++|.... ++. .+++|+.|++++|.... ..+++|+.|+++++. +..++ ...++|++
T Consensus 255 ~---~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~-l~~i~-----~~~~~L~~ 321 (454)
T 1jl5_A 255 L---PPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE-IRSLC-----DLPPSLEE 321 (454)
T ss_dssp C---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSC-CSEEC-----CCCTTCCE
T ss_pred c---ccccCEEECCCCcccc-cCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCc-CCccc-----CCcCcCCE
Confidence 1 2344444444443221 211 12445555555554433 223455555555542 11221 11246777
Q ss_pred EeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 288 LVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 288 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
|++++|. +..+|.. +++|++|++++| .++.+|. .+++|+.|++++|+
T Consensus 322 L~Ls~N~-l~~lp~~---~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 322 LNVSNNK-LIELPAL---PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp EECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred EECCCCc-ccccccc---CCcCCEEECCCC-ccccccc---hhhhccEEECCCCC
Confidence 7777754 3345543 467777777776 4455665 35777777777764
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=4.8e-21 Score=178.22 Aligned_cols=235 Identities=13% Similarity=0.080 Sum_probs=119.9
Q ss_pred hhhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCcccc----CCcC-------cCCCCccceEeccCC
Q 017094 87 SSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALEV----CPRK-------MGNLKHMRYLDLSRN 154 (377)
Q Consensus 87 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~----l~~~-------~~~l~~L~~L~l~~~ 154 (377)
...+..+++|++|++++|.+.. ....+...+..+++|++|+|++|.+.. +|.. +..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3445566666666666664431 122233345566666666666654331 2222 245666666666655
Q ss_pred Cccc----ccChhhcCCCcccEEeccCcccccc----Cchhhccc---------ccccEeeecCccccc--Cc---ccCC
Q 017094 155 SKIK----KLPKSICELQSLQTLDLEGCLELEE----LPKDIRYL---------VILRVFALTTKQKSL--QE---SGIR 212 (377)
Q Consensus 155 ~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l---------~~L~~L~l~~~~~~~--~~---~~l~ 212 (377)
.... .+|..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+.. .+ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 3322 2455566666666666666543211 22223333 566666666666541 11 2344
Q ss_pred CCCCCCEEEccCCCCchh----hHH-hcccCcccchhccccCCCCc----------cCCCccceEEecccccccc----c
Q 017094 213 SLGSLRCLTISGCRDLEH----LFE-EIEQLSLLRTLLIHSYDDRK----------NTRPRLRRVFIKEITQLLE----L 273 (377)
Q Consensus 213 ~l~~L~~L~l~~~~~~~~----~~~-~l~~l~~L~~L~l~~~~~~~----------~~~~~L~~L~l~~~~~~~~----l 273 (377)
.+++|+.|++++|..... +.. .+..+++|+.|++++|.... ...++|++|+|++|..... +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 556666666666654321 222 45566666666666655421 1223444444444432111 3
Q ss_pred chhhhhcCCCCccEEeecCCCCCC----CCCccC-CCCccCceecccCcccCC
Q 017094 274 PQWLLQCCTDTLHTLVIGDCPNFM----ALPGSL-KDLEALETLAIRGCPKLS 321 (377)
Q Consensus 274 ~~~~~~~~~~~L~~L~l~~~~~~~----~l~~~~-~~l~~L~~L~l~~~~~~~ 321 (377)
+..+....+++|++|++++|.... .+|..+ ..+++|++|++++|....
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 333311236677777777765333 255555 446777777777765443
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=6.1e-19 Score=158.78 Aligned_cols=197 Identities=21% Similarity=0.253 Sum_probs=135.7
Q ss_pred hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCc
Q 017094 90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS 169 (377)
Q Consensus 90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~ 169 (377)
...+++|++|+++++..... + .+..+++|++|++++|.+..++. +..+++|++|++++| .+..++ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l----~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI----E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccCc----h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCC
Confidence 44567788888877754321 1 36677888888888888777766 777888888888865 455554 4777888
Q ss_pred ccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccC
Q 017094 170 LQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSY 249 (377)
Q Consensus 170 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 249 (377)
|++|++++| .+..++. +..+++|++|++++|.+...+. +..+++|+.|++++|.... ++. +..+++|+.|++++|
T Consensus 109 L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 109 IKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred CCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCC
Confidence 888888876 4555554 7778888888888887776643 7777888888888776433 322 666677777777666
Q ss_pred CCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCC
Q 017094 250 DDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLP 324 (377)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 324 (377)
... .++. + ..+++|++|++++|. +..++ .+..+++|+.|++++|+. +..|
T Consensus 184 ~l~-------------------~~~~-l--~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~l~~N~i-~~~~ 233 (308)
T 1h6u_A 184 KIS-------------------DISP-L--ASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQTI-TNQP 233 (308)
T ss_dssp CCC-------------------CCGG-G--GGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEEEEEE-ECCC
T ss_pred ccC-------------------cChh-h--cCCCCCCEEEccCCc-cCccc-cccCCCCCCEEEccCCee-ecCC
Confidence 432 3332 3 667888888888875 44555 367888888888888753 4444
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.7e-18 Score=156.06 Aligned_cols=228 Identities=13% Similarity=0.070 Sum_probs=147.6
Q ss_pred ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCc--CCCCccceEeccCCCcccccC----hhh
Q 017094 92 YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKM--GNLKHMRYLDLSRNSKIKKLP----KSI 164 (377)
Q Consensus 92 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~l~----~~~ 164 (377)
....++.+.+..+......-.....+..+++|++|++++|.+. ..|..+ ..+++|++|++++|......+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3345778888776543211111112334567999999999987 456666 889999999999875443333 234
Q ss_pred cCCCcccEEeccCccccccCchhhcccccccEeeecCccccc---Cc--ccCCCCCCCCEEEccCCCCc--hhhHHh-cc
Q 017094 165 CELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL---QE--SGIRSLGSLRCLTISGCRDL--EHLFEE-IE 236 (377)
Q Consensus 165 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~---~~--~~l~~l~~L~~L~l~~~~~~--~~~~~~-l~ 236 (377)
..+++|++|++++|......|..+..+++|++|++++|.+.. .+ ..+..+++|++|++++|... ...+.. ++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 568889999998875544445677888888888888887643 11 23367788888888887653 222222 45
Q ss_pred cCcccchhccccCCCCccCCCccceEEecccccccccchhhhh-cCCCCccEEeecCCCCCCCCCccCCCCccCceeccc
Q 017094 237 QLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQ-CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIR 315 (377)
Q Consensus 237 ~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 315 (377)
.+++|++|++++|.... ..|..+.. ..+++|++|++++|. +..+|..+. ++|++|+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~------------------~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRA------------------TVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp HTCCCSSEECTTSCCCC------------------CCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECC
T ss_pred cCCCCCEEECCCCCCCc------------------cchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECC
Confidence 67788888887776443 11222200 123678888888765 446776653 788888888
Q ss_pred CcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 316 GCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 316 ~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
+| .++.+|. +..+++|+.|++++++
T Consensus 281 ~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 281 SN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CC-cCCCCch-hhhCCCccEEECcCCC
Confidence 87 4555554 5677888888888775
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=4.6e-19 Score=153.66 Aligned_cols=199 Identities=15% Similarity=0.211 Sum_probs=147.2
Q ss_pred CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCc-hhhcccccccEe
Q 017094 121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELP-KDIRYLVILRVF 197 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L 197 (377)
.+|++|++++|.+..+|. .+..+++|++|++++|..++.++. .+..+++|++|++++|..+..+| ..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378888898888887765 678889999999987644666654 67888999999998733555555 457888999999
Q ss_pred eecCcccccCcccCCCCCCCC---EEEccCCCCchhhH-HhcccCcccc-hhccccCCCCccCCCccceEEecccccccc
Q 017094 198 ALTTKQKSLQESGIRSLGSLR---CLTISGCRDLEHLF-EEIEQLSLLR-TLLIHSYDDRKNTRPRLRRVFIKEITQLLE 272 (377)
Q Consensus 198 ~l~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~-~~l~~l~~L~-~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (377)
++++|.++..+. +..+++|+ .|++++|..+..++ ..+..+++|+ .|++++|.. ..
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-------------------~~ 170 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-------------------TS 170 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-------------------CE
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-------------------cc
Confidence 999998887754 78888888 99999883334443 3467778888 888877643 24
Q ss_pred cchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCC-ccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCc
Q 017094 273 LPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDL-EALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL 344 (377)
Q Consensus 273 l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l 344 (377)
+|...+ ..++|++|++++|..+..++ ..+..+ ++|++|++++| .++.+|.. .+++|+.|++.++..|
T Consensus 171 i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 171 VQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp ECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred cCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 555443 22789999999986455654 457788 99999999987 45667754 7889999999988653
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=8.7e-19 Score=154.95 Aligned_cols=208 Identities=17% Similarity=0.116 Sum_probs=126.3
Q ss_pred hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCC
Q 017094 90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQ 168 (377)
Q Consensus 90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~ 168 (377)
...+++|+.|.+.++..... ..+..+++|++|++++|.+..++ .+..+++|++|++++| .+..++ ..+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~-----~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV-----QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCT
T ss_pred cccccceeeeeeCCCCcccc-----cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCc
Confidence 44566777777766644321 12566777777777777766543 5666777777777765 334333 3356677
Q ss_pred cccEEeccCccccccCchhhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccc
Q 017094 169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIH 247 (377)
Q Consensus 169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 247 (377)
+|++|++++|......+..+..+++|++|++++|.++..+. .+..+++|+.|++++|......+..++.+++|+.|+++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 77777777764332233345667777777777776665543 35667777777777766443333335566666666666
Q ss_pred cCCCCccCCCccceEEecccccccccch-hhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcC
Q 017094 248 SYDDRKNTRPRLRRVFIKEITQLLELPQ-WLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPED 326 (377)
Q Consensus 248 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 326 (377)
+|... .++. .+ ..+++|++|++++|.. .+.+++|+.|+++.|.....+|..
T Consensus 190 ~N~l~-------------------~~~~~~~--~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 190 QNQLK-------------------SVPDGVF--DRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SSCCS-------------------CCCTTTT--TTCTTCCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCcCC-------------------ccCHHHH--hCCcCCCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCc
Confidence 65432 2222 23 5667788888877642 245667777877777666677766
Q ss_pred CCCCCC
Q 017094 327 MHHLTT 332 (377)
Q Consensus 327 l~~l~~ 332 (377)
+..++.
T Consensus 242 ~~~~~~ 247 (272)
T 3rfs_A 242 AGSVAP 247 (272)
T ss_dssp TSCBCG
T ss_pred ccccCC
Confidence 655444
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=4.9e-20 Score=168.05 Aligned_cols=244 Identities=16% Similarity=0.119 Sum_probs=160.0
Q ss_pred CCcEEEEEeccccccchhhhhccc--CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc--CCcCcCCCCc
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYL--GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV--CPRKMGNLKH 145 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~l~~ 145 (377)
..+++++.++.+. +..+..+ ++++.|++.++...... ..+..+++|++|++++|.+.. ++..+..+++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~----~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPL----AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCC----CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccc----hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 4667777665544 2234555 77888888776543211 114467788888888887652 6666777888
Q ss_pred cceEeccCCCcccccChhhcCCCcccEEeccCccccc--cCchhhcccccccEeeecCc-cccc--CcccCCCCC-CCCE
Q 017094 146 MRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE--ELPKDIRYLVILRVFALTTK-QKSL--QESGIRSLG-SLRC 219 (377)
Q Consensus 146 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~-~~~~--~~~~l~~l~-~L~~ 219 (377)
|++|++++|......+..++.+++|++|++++|..+. .++..+..+++|++|++++| .++. .+..+..++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 8888888764443566677778888888888774444 25666777888888888887 6663 234566677 8888
Q ss_pred EEccCCC--Cc-hhhHHhcccCcccchhccccCCCCc-------cCCCccceEEecccccccccc-hhhhhcCCCCccEE
Q 017094 220 LTISGCR--DL-EHLFEEIEQLSLLRTLLIHSYDDRK-------NTRPRLRRVFIKEITQLLELP-QWLLQCCTDTLHTL 288 (377)
Q Consensus 220 L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~~~L~~L 288 (377)
|++++|. .. ..++..+..+++|+.|++++|...+ ...++|++|++++|..+.... ..+ ..+++|++|
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L 277 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTL 277 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG--GGCTTCCEE
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH--hcCCCCCEE
Confidence 8888873 32 4456666778888888888877322 234678888888876332221 133 578999999
Q ss_pred eecCCCCCCCCCc-cCCCC-ccCceecccCcccCCCCCcCCC
Q 017094 289 VIGDCPNFMALPG-SLKDL-EALETLAIRGCPKLSSLPEDMH 328 (377)
Q Consensus 289 ~l~~~~~~~~l~~-~~~~l-~~L~~L~l~~~~~~~~~~~~l~ 328 (377)
++++| +++ .+..+ .+|+.|++++|...+..|..+.
T Consensus 278 ~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc-----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 99998 332 22333 3477778887765555565443
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=3.8e-20 Score=172.16 Aligned_cols=247 Identities=12% Similarity=0.033 Sum_probs=182.7
Q ss_pred CCCcEEEEEeccccccc---hhhhhcccCCceEEEeecCCchh-------hHHHHHHHhhccCcccEEEeCCCcccc---
Q 017094 69 KRVRHLSFAAANALRND---FSSLLSYLGRLRTIFFSTDDEKT-------SQSFVESCFSKSQFLRVLNLRESALEV--- 135 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~~~~L~~L~L~~~~~~~--- 135 (377)
+.+++|.+.++.+.... +...+..+++|++|++++|.... ....+...+..+++|++|+|++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 47999999988776532 33457789999999999875432 223344456889999999999999875
Q ss_pred --CCcCcCCCCccceEeccCCCccc----ccChhhcCC---------CcccEEeccCcccc-ccCc---hhhcccccccE
Q 017094 136 --CPRKMGNLKHMRYLDLSRNSKIK----KLPKSICEL---------QSLQTLDLEGCLEL-EELP---KDIRYLVILRV 196 (377)
Q Consensus 136 --l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l---------~~L~~L~l~~~~~~-~~~p---~~l~~l~~L~~ 196 (377)
+|..+..+++|++|++++|.... .++..+..+ ++|++|++++|... ..+| ..+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 67788899999999999875432 233344444 89999999998543 2344 46778999999
Q ss_pred eeecCccccc------CcccCCCCCCCCEEEccCCCCc----hhhHHhcccCcccchhccccCCCCc------------c
Q 017094 197 FALTTKQKSL------QESGIRSLGSLRCLTISGCRDL----EHLFEEIEQLSLLRTLLIHSYDDRK------------N 254 (377)
Q Consensus 197 L~l~~~~~~~------~~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~------------~ 254 (377)
|++++|.+.. .+..+..+++|+.|++++|... ..++..+..+++|+.|++++|.... .
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999998872 2237888999999999999864 6678888999999999999998754 1
Q ss_pred CCCccceEEeccccccc----ccchhhhhcCCCCccEEeecCCCCCCCCC--ccC-CCCccCceecccC
Q 017094 255 TRPRLRRVFIKEITQLL----ELPQWLLQCCTDTLHTLVIGDCPNFMALP--GSL-KDLEALETLAIRG 316 (377)
Q Consensus 255 ~~~~L~~L~l~~~~~~~----~l~~~~~~~~~~~L~~L~l~~~~~~~~l~--~~~-~~l~~L~~L~l~~ 316 (377)
..++|++|+|+++.... .+|..+. ..+++|++|++++|......+ ..+ ..+++++.+.+..
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 26889999999986554 3766653 457999999999987544332 222 2355555555543
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=4.2e-20 Score=181.36 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=19.6
Q ss_pred CCCCccCceecccCcccCC--CCCcCCCCCCCcCeeeccCCC
Q 017094 303 LKDLEALETLAIRGCPKLS--SLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 303 ~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~c~ 342 (377)
+.++++|++|++++|. ++ .++.....+++|++|++++|+
T Consensus 484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 3455556666666554 22 122223345566666666665
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=9e-19 Score=155.17 Aligned_cols=202 Identities=15% Similarity=0.081 Sum_probs=145.4
Q ss_pred CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccE
Q 017094 94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQT 172 (377)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 172 (377)
+++++|++++|.... .....+..+++|++|++++|.+..++. .+..+++|++|++++|......+..+..+++|++
T Consensus 28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 579999999886542 222357889999999999999887654 7889999999999987444344467889999999
Q ss_pred EeccCccccccCchhhcccccccEeeecCccccc--CcccCCCCCCCCEEEccCCCCchhhHHhcccCcccc----hhcc
Q 017094 173 LDLEGCLELEELPKDIRYLVILRVFALTTKQKSL--QESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR----TLLI 246 (377)
Q Consensus 173 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l 246 (377)
|++++|......+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|......+..+..+++|+ .|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 9999874433333368899999999999999886 467888999999999999876554444555555555 4555
Q ss_pred ccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccC
Q 017094 247 HSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKL 320 (377)
Q Consensus 247 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~ 320 (377)
++|.. ..++... ....+|++|++++|. +..+|. .+..+++|++|++++|+..
T Consensus 185 s~n~l-------------------~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPM-------------------NFIQPGA--FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCC-------------------CEECTTS--SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcc-------------------cccCccc--cCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccc
Confidence 55432 2344333 233478888888766 444444 3567888888888877543
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=1e-18 Score=154.53 Aligned_cols=203 Identities=18% Similarity=0.182 Sum_probs=157.7
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~ 147 (377)
+.++.|.+.++.+.... .+..+++|+.|++++|..... ..+..+++|++|++++|.+..++.. +..+++|+
T Consensus 41 ~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHDI-----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp TTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCCC-----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCCc-----hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 47899999888766543 588899999999999876532 3588999999999999999977654 68999999
Q ss_pred eEeccCCCcccccC-hhhcCCCcccEEeccCccccccCch-hhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccC
Q 017094 148 YLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISG 224 (377)
Q Consensus 148 ~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~ 224 (377)
+|++++|. +..++ ..+..+++|++|++++| .+..+|. .+..+++|+.|++++|.++..+. .+..+++|+.|++++
T Consensus 113 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 113 ELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 99999874 55554 45788999999999998 4555554 46899999999999999987654 468899999999999
Q ss_pred CCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCC
Q 017094 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLK 304 (377)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~ 304 (377)
|......+..+..+++|+.|++++|+.. +.+++|+.|+++.|...+.+|.+++
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------------------~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------------------CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBC---------------------------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcc---------------------------ccCcHHHHHHHHHHhCCCcccCccc
Confidence 9876555555788999999999888643 3345566666665555556666665
Q ss_pred CCcc
Q 017094 305 DLEA 308 (377)
Q Consensus 305 ~l~~ 308 (377)
.++.
T Consensus 244 ~~~~ 247 (272)
T 3rfs_A 244 SVAP 247 (272)
T ss_dssp CBCG
T ss_pred ccCC
Confidence 5543
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=5.2e-18 Score=152.70 Aligned_cols=164 Identities=16% Similarity=0.223 Sum_probs=75.7
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL 149 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 149 (377)
++++|.+.++.+.... .+..+++|+.|++++|...... . +..+++|++|++++|.+..++ .+..+++|++|
T Consensus 42 ~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~~----~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLA----P-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp TCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG----G-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred CcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCCh----h-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 4555555544443321 3444555555555554432111 1 445555555555555554443 34455555555
Q ss_pred eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094 150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE 229 (377)
Q Consensus 150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 229 (377)
++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+...+. +..+++|+.|++++|....
T Consensus 113 ~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred ECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence 55543 3333333 445555555555554 2333332 4455555555555555544432 4555555555555544322
Q ss_pred hhHHhcccCcccchhccccC
Q 017094 230 HLFEEIEQLSLLRTLLIHSY 249 (377)
Q Consensus 230 ~~~~~l~~l~~L~~L~l~~~ 249 (377)
++. +..+++|+.|++++|
T Consensus 188 -~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 188 -ISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp -CGG-GGGCTTCCEEECTTS
T ss_pred -Chh-hcCCCCCCEEEccCC
Confidence 111 344444444444444
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.4e-17 Score=147.02 Aligned_cols=197 Identities=22% Similarity=0.247 Sum_probs=136.4
Q ss_pred CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChh-hcCCCcccE
Q 017094 95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKS-ICELQSLQT 172 (377)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~ 172 (377)
..++++++++..... +..+ ..+++.|++++|.+..++. .+..+++|++|++++| .+..+|.. +..+++|++
T Consensus 17 ~~~~l~~~~~~l~~i----p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI----PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSSC----CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCcc----CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCE
Confidence 466777776654321 1111 2578888888888887764 6788888888888875 45566554 467888888
Q ss_pred EeccCccccccCc-hhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094 173 LDLEGCLELEELP-KDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD 250 (377)
Q Consensus 173 L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 250 (377)
|++++|. +..+| ..+..+++|++|++++|.+...+ ..+..+++|+.|++++|......+..++.+++|+.|++++|.
T Consensus 90 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 90 LWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp EECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 8888874 44554 44678888888888888887664 446788889999988886544333346677788888877765
Q ss_pred CCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccC
Q 017094 251 DRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKL 320 (377)
Q Consensus 251 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~ 320 (377)
.. .++...+ ..+++|++|++++|. +..+|. .+..+++|+.|++++|+..
T Consensus 169 l~-------------------~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 169 LK-------------------RVPEGAF-DKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CS-------------------CCCTTTT-TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-------------------EeChhHh-ccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCCee
Confidence 32 3333211 567888999998875 444544 4678888999999888643
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=6.6e-18 Score=150.59 Aligned_cols=129 Identities=22% Similarity=0.197 Sum_probs=62.4
Q ss_pred hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEe
Q 017094 118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVF 197 (377)
Q Consensus 118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 197 (377)
.++++++.++++++.+..+|..+. +++++|++++|......+..+..+++|++|++++| .+..++.. ..+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 344455555555555555554432 45555555544322222344555555555555554 23333322 445555555
Q ss_pred eecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094 198 ALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD 250 (377)
Q Consensus 198 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 250 (377)
++++|.+...+..+..+++|+.|++++|+.....+..+..+++|+.|++++|.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 55555555544445555555555555554332222334455555555555543
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=7.6e-19 Score=161.89 Aligned_cols=241 Identities=12% Similarity=0.067 Sum_probs=128.1
Q ss_pred hhhhcccCCceEEEeecCCchh-hHHHHHHHhhccC-cccEEEeCCCccccC-CcCcCCC-----CccceEeccCCCccc
Q 017094 87 SSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQ-FLRVLNLRESALEVC-PRKMGNL-----KHMRYLDLSRNSKIK 158 (377)
Q Consensus 87 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~-~L~~L~L~~~~~~~l-~~~~~~l-----~~L~~L~l~~~~~~~ 158 (377)
+..+...++|++|++++|.+.. ....+...+..++ +|++|++++|.+... +..+..+ ++|++|++++|....
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 4334444557777777776542 2233335566666 777777777776643 3333333 677777777664322
Q ss_pred ccChh----hcCC-CcccEEeccCccccccCchhh----cc-cccccEeeecCcccccC-----cccCCCCC-CCCEEEc
Q 017094 159 KLPKS----ICEL-QSLQTLDLEGCLELEELPKDI----RY-LVILRVFALTTKQKSLQ-----ESGIRSLG-SLRCLTI 222 (377)
Q Consensus 159 ~l~~~----~~~l-~~L~~L~l~~~~~~~~~p~~l----~~-l~~L~~L~l~~~~~~~~-----~~~l~~l~-~L~~L~l 222 (377)
..+.. +..+ ++|++|++++|......+..+ .. .++|++|++++|.+... +..+..++ +|++|++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 33332 3333 677777777764322222222 23 24777777777766632 12233443 7777777
Q ss_pred cCCCCchhhHH----hcccC-cccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCC
Q 017094 223 SGCRDLEHLFE----EIEQL-SLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFM 297 (377)
Q Consensus 223 ~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 297 (377)
++|......+. .+..+ ++|+.|++++|.... .+...++..+. ...++|++|++++|....
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~--------------~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL--------------KSYAELAYIFS-SIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG--------------SCHHHHHHHHH-HSCTTCCEEECCSSCCCC
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh--------------hHHHHHHHHHh-cCCCCceEEECcCCCCCc
Confidence 77765433332 33344 366666666665432 11112343331 123467777777664322
Q ss_pred CC----CccCCCCccCceecccCccc-------CCCCCcCCCCCCCcCeeeccCCC
Q 017094 298 AL----PGSLKDLEALETLAIRGCPK-------LSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 298 ~l----~~~~~~l~~L~~L~l~~~~~-------~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
.- ...+..+++|++|++++|.. ...++..+..+++|++|++++++
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 11 22345666677777776641 11233345566667777776664
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=3.8e-17 Score=147.23 Aligned_cols=228 Identities=14% Similarity=0.140 Sum_probs=165.7
Q ss_pred CcccEEEeCCCcccc--CCc--CcCCCCccceEeccCCCcccccChhh--cCCCcccEEeccCccccccCc----hhhcc
Q 017094 121 QFLRVLNLRESALEV--CPR--KMGNLKHMRYLDLSRNSKIKKLPKSI--CELQSLQTLDLEGCLELEELP----KDIRY 190 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~--l~~--~~~~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~p----~~l~~ 190 (377)
..++.+.+.++.+.. +.. ....+++|++|++++|......|..+ ..+++|++|++++|......+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 457888888877641 111 12234679999999886666777776 889999999999985444333 34467
Q ss_pred cccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchh--hHHh--cccCcccchhccccCCCCccCCCccceEEec
Q 017094 191 LVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEH--LFEE--IEQLSLLRTLLIHSYDDRKNTRPRLRRVFIK 265 (377)
Q Consensus 191 l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--~~~~--l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~ 265 (377)
+++|++|++++|.+...+ ..++.+++|++|++++|+.... ++.. ++.+++|++|++++|....
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------ 211 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET------------ 211 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC------------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc------------
Confidence 899999999999998664 6788999999999999986543 3322 3678889999998875421
Q ss_pred ccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCC---ccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094 266 EITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL---EALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342 (377)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 342 (377)
+...+.+++ ..+++|++|++++|......|..+..+ ++|++|++++|. ++.+|..+. ++|++|++++|.
T Consensus 212 ----l~~~~~~l~-~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 212 ----PTGVCAALA-AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp ----HHHHHHHHH-HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCC
T ss_pred ----hHHHHHHHH-hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCc
Confidence 112222222 567999999999988655557777665 799999999984 568887664 899999999995
Q ss_pred CccccCCCCCCCCCCCCCccceEEeCCCccCCC
Q 017094 343 ALSERCKPPTGEDWPKIAHITQIELDDEIIKSS 375 (377)
Q Consensus 343 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 375 (377)
++..+. ...+.+++.+.+.++++...
T Consensus 284 -l~~~~~------~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 284 -LNRAPQ------PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp -CCSCCC------TTSCCCCSCEECSSTTTSCC
T ss_pred -CCCCch------hhhCCCccEEECcCCCCCCC
Confidence 343322 33568889999999998764
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=1.6e-18 Score=170.16 Aligned_cols=158 Identities=12% Similarity=0.029 Sum_probs=77.2
Q ss_pred CchhhcccccccEeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhcccc----------CCC
Q 017094 184 LPKDIRYLVILRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHS----------YDD 251 (377)
Q Consensus 184 ~p~~l~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~ 251 (377)
+|..+..+++|++|++++|.++... ..+..+++|+.|++.++.....++.....+++|++|++++ |..
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 3444455556666666655533211 2235566666666653222222233334556666666663 333
Q ss_pred Cc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecC---CCCCCCCC------ccCCCCccCceecc
Q 017094 252 RK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGD---CPNFMALP------GSLKDLEALETLAI 314 (377)
Q Consensus 252 ~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~---~~~~~~l~------~~~~~l~~L~~L~l 314 (377)
.+ ..+++|++|++. +..+.......+...+++|++|++++ |..+...| ..+.++++|++|++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 22 224566666663 23332222112223466777777763 33343322 12345777777777
Q ss_pred cCccc-CC-CCCcC-CCCCCCcCeeeccCCC
Q 017094 315 RGCPK-LS-SLPED-MHHLTTLKLLAIGGCP 342 (377)
Q Consensus 315 ~~~~~-~~-~~~~~-l~~l~~L~~L~l~~c~ 342 (377)
+.|.. ++ ..+.. ...+++|+.|++++|.
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 65542 22 11111 1346778888888775
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=1.2e-17 Score=144.76 Aligned_cols=198 Identities=14% Similarity=0.132 Sum_probs=142.7
Q ss_pred CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCc-cccCCc-CcCCCCccceEeccCCCcccccC-hhhcCCCcc
Q 017094 94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESA-LEVCPR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSL 170 (377)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L 170 (377)
++++.|++++|.... ..+..+..+++|++|++++|. +..++. .+..+++|++|++++|..+..+| ..+..+++|
T Consensus 31 ~~l~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 478889988886542 223357788899999999996 877765 67889999999998734666665 467789999
Q ss_pred cEEeccCccccccCchhhccccccc---EeeecCc-ccccCc-ccCCCCCCCC-EEEccCCCCchhhHHhcccCcccchh
Q 017094 171 QTLDLEGCLELEELPKDIRYLVILR---VFALTTK-QKSLQE-SGIRSLGSLR-CLTISGCRDLEHLFEEIEQLSLLRTL 244 (377)
Q Consensus 171 ~~L~l~~~~~~~~~p~~l~~l~~L~---~L~l~~~-~~~~~~-~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L 244 (377)
++|++++| .+..+|. +..+++|+ .|++++| .+...+ ..+..+++|+ .|++++|... .++......++|+.|
T Consensus 108 ~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L 184 (239)
T 2xwt_C 108 KFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184 (239)
T ss_dssp CEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE
T ss_pred CEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE
Confidence 99999987 4566776 77788887 9999998 777654 4578899999 9999887654 444332223566666
Q ss_pred ccccCCCCccCCCccceEEecccccccccchhhhhcCC-CCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094 245 LIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCT-DTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK 319 (377)
Q Consensus 245 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 319 (377)
++++|. .+..++...+ ..+ ++|++|++++|. +..+|.. .+++|+.|++.++..
T Consensus 185 ~L~~n~------------------~l~~i~~~~~-~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 185 YLNKNK------------------YLTVIDKDAF-GGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp ECTTCT------------------TCCEECTTTT-TTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC--
T ss_pred EcCCCC------------------CcccCCHHHh-hccccCCcEEECCCCc-cccCChh--HhccCceeeccCccC
Confidence 666553 2335554333 566 899999999865 5567754 788999999988753
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2e-16 Score=138.01 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=110.2
Q ss_pred CcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeec
Q 017094 121 QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT 200 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 200 (377)
...+.++++++.+..+|..+. ++++.|++++|......+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 346777788877777776654 577888888664333344457777888888888764433344456777788888888
Q ss_pred CcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccch-hhh
Q 017094 201 TKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQ-WLL 278 (377)
Q Consensus 201 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~ 278 (377)
+|.++..+ ..+..+++|+.|++++|......+..+..+++|+.|++++|... .++. .+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------~~~~~~~- 151 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------------------SIPAGAF- 151 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTT-
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-------------------ccCHHHc-
Confidence 87777654 34567777777777777544322233455666666666655322 2333 22
Q ss_pred hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094 279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK 319 (377)
Q Consensus 279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 319 (377)
..+++|++|++++|......+..+..+++|++|++++|+.
T Consensus 152 -~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 152 -DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp -TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred -CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 4556677777776653333333566677777777776654
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=8.7e-17 Score=147.36 Aligned_cols=215 Identities=16% Similarity=0.172 Sum_probs=155.5
Q ss_pred CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccC-chhhcccccccEe
Q 017094 121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVF 197 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L 197 (377)
.++++|+|++|.++.+|. ++.++++|++|++++|...+.+|. ++..++++.++...++..+..+ |..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578888888888888775 578888888888887755565654 4567777776544443455555 4557888888888
Q ss_pred eecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHH-hcccC-cccchhccccCCCCc-----cCCCccceEEeccccc
Q 017094 198 ALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFE-EIEQL-SLLRTLLIHSYDDRK-----NTRPRLRRVFIKEITQ 269 (377)
Q Consensus 198 ~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l-~~L~~L~l~~~~~~~-----~~~~~L~~L~l~~~~~ 269 (377)
++++|.+...+ ..+....++..+++.++..+..++. .+..+ ..++.|++++|.... +...++++|.+.++..
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 88888887654 2344566677788777655554443 34444 357788888876544 2345788888888888
Q ss_pred ccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccC
Q 017094 270 LLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGG 340 (377)
Q Consensus 270 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 340 (377)
+..+|...+ ..+++|++|++++|. +..+|. ..+.+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 190 l~~i~~~~f-~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPNDVF-HGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTTTT-TTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccCCCHHHh-ccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 889987554 678999999999975 677775 3467788888888888888885 78899999998864
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=6.7e-19 Score=172.82 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=72.3
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc-----CCcCcCCC
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV-----CPRKMGNL 143 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~l 143 (377)
+++++|.+.++.+....+......+++|++|++.+|.. .....+...+..+++|++|++++|.+.. ++.....+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 48899999988765544333333689999999988732 2344466667788999999999988653 33344467
Q ss_pred CccceEeccCCC-ccc--ccChhhcCCCcccEEeccCc
Q 017094 144 KHMRYLDLSRNS-KIK--KLPKSICELQSLQTLDLEGC 178 (377)
Q Consensus 144 ~~L~~L~l~~~~-~~~--~l~~~~~~l~~L~~L~l~~~ 178 (377)
++|++|++++|. .+. .++..+..+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 788888888764 111 22222344677777777766
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=6.8e-18 Score=155.51 Aligned_cols=248 Identities=16% Similarity=0.138 Sum_probs=164.4
Q ss_pred HHHHHHhhccCcccEEEeCCCccccCC-----cCcCCCC-ccceEeccCCCcccccChhhcCC-----CcccEEeccCcc
Q 017094 111 SFVESCFSKSQFLRVLNLRESALEVCP-----RKMGNLK-HMRYLDLSRNSKIKKLPKSICEL-----QSLQTLDLEGCL 179 (377)
Q Consensus 111 ~~~~~~~~~~~~L~~L~L~~~~~~~l~-----~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~ 179 (377)
..++.++...++|++|++++|.+...+ ..+..++ +|++|++++|......+..+..+ ++|++|++++|.
T Consensus 12 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 12 NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 345566667777999999999988665 5677788 89999999875444445555554 899999999985
Q ss_pred ccccCchh----hccc-ccccEeeecCcccccCcc-----cCCC-CCCCCEEEccCCCCch----hhHHhcccCc-ccch
Q 017094 180 ELEELPKD----IRYL-VILRVFALTTKQKSLQES-----GIRS-LGSLRCLTISGCRDLE----HLFEEIEQLS-LLRT 243 (377)
Q Consensus 180 ~~~~~p~~----l~~l-~~L~~L~l~~~~~~~~~~-----~l~~-l~~L~~L~l~~~~~~~----~~~~~l~~l~-~L~~ 243 (377)
.....+.. +..+ ++|+.|++++|.++..+. .+.. .++|++|++++|.... .++..+..++ +|++
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 44444443 3444 899999999998876532 2344 4689999999987653 4455556665 7888
Q ss_pred hccccCCCCccCCCccceEEecccccccccchhhhhcCC-CCccEEeecCCCCCCC----CCccCCC-CccCceecccCc
Q 017094 244 LLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCT-DTLHTLVIGDCPNFMA----LPGSLKD-LEALETLAIRGC 317 (377)
Q Consensus 244 L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~----l~~~~~~-l~~L~~L~l~~~ 317 (377)
|++++|.... .....+...+ ..+ ++|++|++++|..... ++..+.. .++|++|++++|
T Consensus 172 L~Ls~n~l~~--------------~~~~~l~~~l--~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 172 LNLRGNNLAS--------------KNCAELAKFL--ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp EECTTSCGGG--------------SCHHHHHHHH--HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred eeecCCCCch--------------hhHHHHHHHH--HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 8887775432 1111222233 345 5999999999863321 4444544 459999999998
Q ss_pred ccCCCC----CcCCCCCCCcCeeeccCCC--CccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094 318 PKLSSL----PEDMHHLTTLKLLAIGGCP--ALSERCKPPTGEDWPKIAHITQIELDDEIIKS 374 (377)
Q Consensus 318 ~~~~~~----~~~l~~l~~L~~L~l~~c~--~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (377)
.....- ...+..+++|+.|++++|. .++..........+....++..+.+.++.+..
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 543322 2445788999999999986 22222111122234456667777777777764
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2e-16 Score=141.12 Aligned_cols=168 Identities=18% Similarity=0.249 Sum_probs=91.9
Q ss_pred ccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEee
Q 017094 119 KSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFA 198 (377)
Q Consensus 119 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 198 (377)
.+++|+.|++++|.+..++ .+..+++|++|++++| .+..++. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEE
Confidence 3455666666666555553 3555566666666654 3444444 556666666666654 333333 255666666666
Q ss_pred ecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhh
Q 017094 199 LTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLL 278 (377)
Q Consensus 199 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~ 278 (377)
+++|.+... +.+..+++|+.|++++|.... + ..+..+++|+.|++++|... .++. +
T Consensus 119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~-------------------~~~~-l- 174 (291)
T 1h6t_A 119 LEHNGISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQIS-------------------DIVP-L- 174 (291)
T ss_dssp CTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC-------------------CCGG-G-
T ss_pred CCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccc-------------------cchh-h-
Confidence 666665554 345556666666666655332 2 34555555555555554322 2222 2
Q ss_pred hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcc
Q 017094 279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCP 318 (377)
Q Consensus 279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 318 (377)
..+++|+.|++++|. +..++. +..+++|+.|++++|+
T Consensus 175 -~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 175 -AGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -TTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEEE
T ss_pred -cCCCccCEEECCCCc-CCCChh-hccCCCCCEEECcCCc
Confidence 455666666666653 344443 5666667777766664
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=5e-16 Score=135.46 Aligned_cols=176 Identities=17% Similarity=0.182 Sum_probs=137.6
Q ss_pred CccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEc
Q 017094 144 KHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTI 222 (377)
Q Consensus 144 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l 222 (377)
...+++++++ ..+..+|..+. +++++|++++|......+..+..+++|++|++++|.+...+ ..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4678899986 47888887654 68999999998555555567899999999999999998765 45789999999999
Q ss_pred cCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-
Q 017094 223 SGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG- 301 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~- 301 (377)
++|......+..+..+++|+.|++++|... .++...+ ..+++|++|++++|. +..++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~ 149 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-------------------SLPSGVF-DRLTKLKELRLNTNQ-LQSIPAG 149 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTT-TTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCC-------------------CcChhHh-ccCCcccEEECcCCc-CCccCHH
Confidence 998866544455778888888888887543 3443322 678999999999986 445554
Q ss_pred cCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094 302 SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA 343 (377)
Q Consensus 302 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 343 (377)
.+..+++|++|++++|......+..+..+++|+.|++.+|+-
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 688999999999999855444345688999999999999874
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=7.8e-18 Score=165.25 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=95.5
Q ss_pred CCCcEEEEEeccccc-c-------------chhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCC-cc
Q 017094 69 KRVRHLSFAAANALR-N-------------DFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRES-AL 133 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~-~-------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~ 133 (377)
+++++|.+.++.... . .+......+++|++|+++++... ...+......+++|++|++++| .+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--HHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 478999998864221 1 12334567899999999988643 3334444447899999999998 45
Q ss_pred cc--CCcCcCCCCccceEeccCCCccc----ccChhhcCCCcccEEeccCcc-cc--ccCchhhcccccccEeeecCc-c
Q 017094 134 EV--CPRKMGNLKHMRYLDLSRNSKIK----KLPKSICELQSLQTLDLEGCL-EL--EELPKDIRYLVILRVFALTTK-Q 203 (377)
Q Consensus 134 ~~--l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~-~~--~~~p~~l~~l~~L~~L~l~~~-~ 203 (377)
.. ++..+..+++|++|++++|.... .++.....+++|++|++++|. .+ ..++..+..+++|+.|++++| .
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 55555678999999999875222 233333467899999999874 11 112233456788999999877 2
Q ss_pred cccCcccCCCCCCCCEEE
Q 017094 204 KSLQESGIRSLGSLRCLT 221 (377)
Q Consensus 204 ~~~~~~~l~~l~~L~~L~ 221 (377)
....+..+..+++|+.|+
T Consensus 224 ~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELG 241 (594)
T ss_dssp HHHHHHHHHHCTTCSEEE
T ss_pred HHHHHHHHhcCCcceEcc
Confidence 222223333444444444
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.2e-15 Score=139.79 Aligned_cols=217 Identities=17% Similarity=0.117 Sum_probs=164.8
Q ss_pred cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccE-eeec
Q 017094 124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRV-FALT 200 (377)
Q Consensus 124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~-L~l~ 200 (377)
+.++-+++.++.+|..+ .+++++|++++| .++.+|. +|..+++|++|++++|...+.+|. .+.++++++. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777888888898776 368999999976 6788875 588999999999999866666665 4678888765 5666
Q ss_pred CcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc--------cCCCccceEEeccccccc
Q 017094 201 TKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK--------NTRPRLRRVFIKEITQLL 271 (377)
Q Consensus 201 ~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~ 271 (377)
+|.+... +..+..+++|+.|++++|......+..+....++..+++.++.... .....++.|+++++ .+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-ccc
Confidence 7777765 4678899999999999987544333334455567777776654333 12246888999886 556
Q ss_pred ccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCC
Q 017094 272 ELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCK 349 (377)
Q Consensus 272 ~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 349 (377)
.++... ....+|++|++.++..++.+|. .+..+++|++|++++| .++.+|.. .+.+|+.|.+.+|..++..+.
T Consensus 168 ~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 EIHNSA--FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp EECTTS--STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred CCChhh--ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 777766 4557899999998888888886 5689999999999998 67778853 467888888888888887764
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=8.1e-16 Score=150.22 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=90.2
Q ss_pred ccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEee
Q 017094 119 KSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFA 198 (377)
Q Consensus 119 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 198 (377)
.+.+|+.|+++++.+..++ .+..+++|+.|++++| .+..+++ +..+++|+.|++++| .+..+| .+..+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 4455566666666555554 3555566666666644 3444443 555666666666654 333333 455566666666
Q ss_pred ecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhh
Q 017094 199 LTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLL 278 (377)
Q Consensus 199 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~ 278 (377)
+++|.+... +.+..+++|+.|++++|.... + ..+..+++|+.|++++|... .++. +
T Consensus 116 Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-------------------~~~~-l- 171 (605)
T 1m9s_A 116 LEHNGISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQIS-------------------DIVP-L- 171 (605)
T ss_dssp CTTSCCCCC-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCC-------------------CCGG-G-
T ss_pred ecCCCCCCC-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCC-------------------Cchh-h-
Confidence 666655554 345556666666666654332 1 34455555555555554322 2222 2
Q ss_pred hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094 279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK 319 (377)
Q Consensus 279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 319 (377)
..+++|+.|++++|. +..++ .+..+++|+.|+|++|..
T Consensus 172 -~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 172 -AGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp -TTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSEEE
T ss_pred -ccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCCcC
Confidence 455666666666653 33343 355666666666666643
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=8.4e-16 Score=148.63 Aligned_cols=184 Identities=18% Similarity=0.183 Sum_probs=91.2
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT 201 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 201 (377)
+|+.|+++++.+..+|..+. ++|++|++++| .+..+| ..+++|++|++++| .+..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 56666666666665555442 55666666654 444555 34566666666665 3344554 433 566666666
Q ss_pred cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCcc--CCCccceEEecccccccccchhhhh
Q 017094 202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKN--TRPRLRRVFIKEITQLLELPQWLLQ 279 (377)
Q Consensus 202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~L~~L~l~~~~~~~~l~~~~~~ 279 (377)
|.++.+|. .+++|+.|++++|.... +|. .+++|+.|++++|..... ..++|+.|+++++ .+..+|. +..
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N-~L~~lp~-~~~ 200 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTN-LLESLPA-VPV 200 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-CC-
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCC-CCCchhh-HHH
Confidence 66665543 45666666666655322 322 344555555555432210 0123333444333 2223433 200
Q ss_pred ---cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCc
Q 017094 280 ---CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPE 325 (377)
Q Consensus 280 ---~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 325 (377)
...+.|+.|++++|. +..+|..+..+++|+.|++++|+..+.+|.
T Consensus 201 ~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 011122666666653 445666555566666666666654444333
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=5.1e-16 Score=130.22 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=97.9
Q ss_pred CCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc-CcccCCCCCCCCE
Q 017094 141 GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL-QESGIRSLGSLRC 219 (377)
Q Consensus 141 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~ 219 (377)
..+++|++|++++| .+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .+..++.+++|+.
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56678888888865 556666 5778888888888877 444443 57778888888888887774 3466777788888
Q ss_pred EEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCC
Q 017094 220 LTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL 299 (377)
Q Consensus 220 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l 299 (377)
|++++|......+..++.+++|+.|++++|... .+++ .+ ..+++|++|++++|. +..+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i------------------~~~~-~l--~~l~~L~~L~l~~n~-i~~~ 174 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAI------------------TDIM-PL--KTLPELKSLNIQFDG-VHDY 174 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC------------------CCCG-GG--GGCSSCCEEECTTBC-CCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCc------------------cccH-hh--cCCCCCCEEECCCCC-CcCh
Confidence 888877766656666666666666666665421 1333 22 455666666666654 3333
Q ss_pred CccCCCCccCceecccCcc
Q 017094 300 PGSLKDLEALETLAIRGCP 318 (377)
Q Consensus 300 ~~~~~~l~~L~~L~l~~~~ 318 (377)
+ .+..+++|++|++++|.
T Consensus 175 ~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp T-TGGGCSSCCEEEECBC-
T ss_pred H-HhccCCCCCEEEeeCcc
Confidence 3 44556666666666553
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=2.3e-15 Score=134.17 Aligned_cols=167 Identities=19% Similarity=0.240 Sum_probs=114.4
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL 149 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 149 (377)
++++|.+.++.+.... .+..+++|++|++++|...... . +..+++|++|++++|.+..++. +..+++|++|
T Consensus 47 ~L~~L~l~~~~i~~~~---~~~~l~~L~~L~L~~n~l~~~~----~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIK----P-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp TCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred cccEEEccCCCcccCh---hHhcCCCCCEEEccCCccCCCc----c-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 6777777776665532 4677788888888777654221 1 6777788888888887776543 7777888888
Q ss_pred eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094 150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE 229 (377)
Q Consensus 150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 229 (377)
++++| .+..++ .+..+++|++|++++| .+..+ ..+..+++|+.|++++|.+...+. +..+++|+.|++++|....
T Consensus 118 ~L~~n-~i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTS-CCCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred ECCCC-cCCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence 88765 455553 4677788888888776 44444 457777888888888887776644 7777888888887776433
Q ss_pred hhHHhcccCcccchhccccCCCC
Q 017094 230 HLFEEIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 230 ~~~~~l~~l~~L~~L~l~~~~~~ 252 (377)
++ .+..+++|+.|++++|...
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEE
T ss_pred -Ch-hhccCCCCCEEECcCCccc
Confidence 32 3666777777777766543
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=2.8e-15 Score=126.84 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=105.9
Q ss_pred cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEeeecC
Q 017094 124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTT 201 (377)
Q Consensus 124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~ 201 (377)
+.++.+++.+..+|..+ .++|++|++++| .+..++. .+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 45555666666665443 346777777755 3344433 3556677777777765 3344443 346677777777777
Q ss_pred cccccCcc-cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhc
Q 017094 202 KQKSLQES-GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQC 280 (377)
Q Consensus 202 ~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~ 280 (377)
|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|... .++...+ .
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------------------~~~~~~~-~ 145 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------------------SVPDGVF-D 145 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------------------CCCTTTT-T
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------------------eeCHHHh-c
Confidence 76665543 3566777777777776544322333556666666666665432 2332211 5
Q ss_pred CCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCC
Q 017094 281 CTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTT 332 (377)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 332 (377)
.+++|++|++++|. +.+.+++|+.|+++.|.....+|..++.++.
T Consensus 146 ~l~~L~~L~l~~N~-------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 146 RLTSLQYIWLHDNP-------WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCTTCCEEECCSCC-------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCccEEEecCCC-------eecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 56778888887764 2345667888888887766677776655544
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=4.2e-15 Score=124.59 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=84.7
Q ss_pred CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc-CCcCcCCCCccce
Q 017094 70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV-CPRKMGNLKHMRY 148 (377)
Q Consensus 70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~l~~L~~ 148 (377)
++++|.+.++.+... + .+..+++|++|++++|..... ..+..+++|++|++++|.+.. .+..++.+++|++
T Consensus 45 ~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 45 SLTYITLANINVTDL--T-GIEYAHNIKDLTINNIHATNY-----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp TCCEEEEESSCCSCC--T-TGGGCTTCSEEEEESCCCSCC-----GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred CccEEeccCCCccCh--H-HHhcCCCCCEEEccCCCCCcc-----hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 566666666555532 2 355666666666666533211 135556666666666666653 4555666666666
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 226 (377)
|++++|......|..++.+++|++|++++|..+..+| .+..+++|+.|++++|.+...+ .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 6666553333445556666666666666654355554 4566666666666666665543 55556666666666654
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.8e-15 Score=128.06 Aligned_cols=128 Identities=24% Similarity=0.281 Sum_probs=67.8
Q ss_pred CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEe
Q 017094 121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVF 197 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L 197 (377)
++|++|+++++.+..++. .+..+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|. .+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence 355666666666554443 2455666666666654 3333333 24556666666666552 333333 34556666666
Q ss_pred eecCcccccCcc-cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094 198 ALTTKQKSLQES-GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD 250 (377)
Q Consensus 198 ~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 250 (377)
++++|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 666666554432 24556666666666655432222234555566666665553
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=4.5e-15 Score=144.97 Aligned_cols=169 Identities=18% Similarity=0.250 Sum_probs=136.3
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY 148 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 148 (377)
+.++.|.+.++.+.... .+..+++|+.|++++|.+..... +..+++|+.|+|++|.+..+| .+..+++|++
T Consensus 43 ~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp TTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred CCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh-----hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 37788888877766543 58889999999999987653221 788999999999999998776 7888999999
Q ss_pred EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094 149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL 228 (377)
Q Consensus 149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 228 (377)
|++++| .+..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++++|.+...++ +..+++|+.|++++|...
T Consensus 114 L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTS-CCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EEecCC-CCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 999976 556654 4888999999999987 45555 568899999999999999887755 889999999999998754
Q ss_pred hhhHHhcccCcccchhccccCCCCc
Q 017094 229 EHLFEEIEQLSLLRTLLIHSYDDRK 253 (377)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~~~~~~ 253 (377)
. + ..+..+++|+.|++++|....
T Consensus 189 ~-l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 189 D-L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp B-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred C-C-hHHccCCCCCEEEccCCcCcC
Confidence 4 3 457888999999999887655
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1.1e-15 Score=147.79 Aligned_cols=185 Identities=19% Similarity=0.242 Sum_probs=110.5
Q ss_pred CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094 95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD 174 (377)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 174 (377)
+++.|++++|.+.. ++..+ +++|++|++++|.+..+| ..+++|++|++++| .+..+|. +.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~----lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS----LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC----CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc----cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEE
Confidence 66666666654432 11111 255666666666666665 34566666666654 4444555 433 666666
Q ss_pred ccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCcc
Q 017094 175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKN 254 (377)
Q Consensus 175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 254 (377)
+++| .+..+|. .+++|+.|++++|.++.++. .+++|+.|++++|.... +|. +. ++|+.|++++|.....
T Consensus 127 Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 127 VDNN-QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CCCC-cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 6665 3444554 45666666666666665543 45666666666665332 444 33 5666666666654321
Q ss_pred --CCCcc-------ceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCC
Q 017094 255 --TRPRL-------RRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL 306 (377)
Q Consensus 255 --~~~~L-------~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l 306 (377)
.+.+| +.|+++++ .+..+|..+ ..+++|+.|++++|......|..+..+
T Consensus 196 p~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PAVPVRNHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCCC--------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhHHHhhhcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 11245 88888876 455788888 569999999999998766666655443
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2.8e-17 Score=159.54 Aligned_cols=194 Identities=14% Similarity=0.113 Sum_probs=117.6
Q ss_pred hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCC-------------cccccChhhcCCCcccEEe-ccCcccccc
Q 017094 118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNS-------------KIKKLPKSICELQSLQTLD-LEGCLELEE 183 (377)
Q Consensus 118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------~~~~l~~~~~~l~~L~~L~-l~~~~~~~~ 183 (377)
..+++|+.|+|++|.+..+|..++.+++|+.|++++|. .....|..++.+++|+.|+ ++.+ .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 34566777777777777777777777777777775432 2234455566677777776 4332 2222
Q ss_pred Cch------hhcc--cccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccC
Q 017094 184 LPK------DIRY--LVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNT 255 (377)
Q Consensus 184 ~p~------~l~~--l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 255 (377)
++. .+.. ...|+.|++++|.++..|. ++.+++|+.|++++|... .+|..++.+++|+.|++++|...
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--- 499 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--- 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC---
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC---
Confidence 211 1111 1246777777777776654 777777777777776544 56666777777777777665432
Q ss_pred CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCC-CccCCCCccCceecccCcccCCCCCcCC----CCC
Q 017094 256 RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL-PGSLKDLEALETLAIRGCPKLSSLPEDM----HHL 330 (377)
Q Consensus 256 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l 330 (377)
.+| .+ ..+++|+.|++++|...... |..+..+++|+.|++++|.. +.+|... ..+
T Consensus 500 ----------------~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~l 559 (567)
T 1dce_A 500 ----------------NVD-GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEML 559 (567)
T ss_dssp ----------------CCG-GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHC
T ss_pred ----------------CCc-cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHC
Confidence 344 33 66777777777776533332 67777777777777777743 3333322 226
Q ss_pred CCcCeee
Q 017094 331 TTLKLLA 337 (377)
Q Consensus 331 ~~L~~L~ 337 (377)
|+|+.|+
T Consensus 560 p~L~~L~ 566 (567)
T 1dce_A 560 PSVSSIL 566 (567)
T ss_dssp TTCSEEE
T ss_pred cccCccC
Confidence 6777665
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=2.8e-15 Score=149.85 Aligned_cols=195 Identities=16% Similarity=0.153 Sum_probs=121.2
Q ss_pred CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCch-hhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094 69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEK-TSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR 147 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~ 147 (377)
+.+++|++..+.+... +........|+.+.+...... ......+..+..+..|+.|+|++|.+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcc--hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 4577777776655442 223334444444444332111 1112445678899999999999999999998888999999
Q ss_pred eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCC
Q 017094 148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRD 227 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 227 (377)
+|+|++| .+..+|..++.+++|++|+|++| .+..+|..++.+++|++|++++|.+..+|..++.+++|+.|++++|..
T Consensus 251 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred EEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 9999986 66699999999999999999998 466899999999999999999999998888899999999999999998
Q ss_pred chhhHHhcccCc-ccchhccccCCCCccCCCccceEEeccc
Q 017094 228 LEHLFEEIEQLS-LLRTLLIHSYDDRKNTRPRLRRVFIKEI 267 (377)
Q Consensus 228 ~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~L~~L~l~~~ 267 (377)
....+..+..+. .+..+++++|......+..|+.|++..+
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD 369 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence 777777665543 2234778888777667778888888765
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=4.3e-15 Score=130.38 Aligned_cols=162 Identities=16% Similarity=0.189 Sum_probs=70.0
Q ss_pred cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcc
Q 017094 124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ 203 (377)
Q Consensus 124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 203 (377)
..++++++.+..++ .+..+++|++|++++| .+..++ .+..+++|++|++++| .+..++. +..+++|++|++++|.
T Consensus 22 ~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc
Confidence 33344444444333 3344444444444433 333333 3444444455554443 2333333 4444445555555544
Q ss_pred cccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCC
Q 017094 204 KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTD 283 (377)
Q Consensus 204 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~ 283 (377)
+...+. +.. ++|+.|++++|.... + ..+..+++|+.|++++|... .++ .+ ..++
T Consensus 97 l~~l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~-------------------~~~-~l--~~l~ 150 (263)
T 1xeu_A 97 LKNLNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLK-------------------SIV-ML--GFLS 150 (263)
T ss_dssp CSCCTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCC-------------------BCG-GG--GGCT
T ss_pred cCCcCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCC-------------------CCh-HH--ccCC
Confidence 444321 222 445555555544322 1 22444444444444444321 111 12 3445
Q ss_pred CccEEeecCCCCCCCCCccCCCCccCceecccCcc
Q 017094 284 TLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCP 318 (377)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 318 (377)
+|++|++++|.. ..+ ..+..+++|+.|++++|.
T Consensus 151 ~L~~L~L~~N~i-~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 151 KLEVLDLHGNEI-TNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCEEECTTSCC-CBC-TTSTTCCCCCEEEEEEEE
T ss_pred CCCEEECCCCcC-cch-HHhccCCCCCEEeCCCCc
Confidence 555555555432 222 344555555555555553
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=2.6e-14 Score=116.54 Aligned_cols=133 Identities=16% Similarity=0.138 Sum_probs=103.9
Q ss_pred hccCcccEEEeCCCccc--cCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccccc
Q 017094 118 SKSQFLRVLNLRESALE--VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR 195 (377)
Q Consensus 118 ~~~~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 195 (377)
...++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 44578889999988887 788888888999999998764 5555 5678888999999988754444777777789999
Q ss_pred EeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhhH---HhcccCcccchhccccCCCC
Q 017094 196 VFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLF---EEIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 196 ~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~ 252 (377)
+|++++|.++..+ ..+..+++|+.|++++|......+ ..+..+++|+.|++++|...
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999888764 678888999999998887543222 36778888999888887653
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=3.6e-14 Score=124.44 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=103.7
Q ss_pred hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC
Q 017094 89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ 168 (377)
Q Consensus 89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~ 168 (377)
.+..+++|+.|++++|..... + .+..+++|++|++++|.+..++. +..+++|++|++++| .+..+|.. .. +
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l----~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~ 106 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSL----A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-A 106 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-S
T ss_pred chhhcCcCcEEECcCCCcccc----h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-C
Confidence 356677788888877755422 1 46677788888888887777765 777788888888865 55556543 33 7
Q ss_pred cccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhcccc
Q 017094 169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHS 248 (377)
Q Consensus 169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 248 (377)
+|++|++++| .+..++ .+..+++|+.|++++|.++..+ .+..+++|+.|++++|..... ..+..+++|+.|++++
T Consensus 107 ~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred cccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 7888888876 445554 4777788888888888777663 677778888888887765443 4566677777777776
Q ss_pred CCCC
Q 017094 249 YDDR 252 (377)
Q Consensus 249 ~~~~ 252 (377)
|...
T Consensus 182 N~~~ 185 (263)
T 1xeu_A 182 QKCV 185 (263)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 6543
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=9.9e-14 Score=118.30 Aligned_cols=130 Identities=22% Similarity=0.302 Sum_probs=78.9
Q ss_pred CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchh-hcccccccEee
Q 017094 121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFA 198 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~ 198 (377)
+.|+.|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++++| .+..+|.. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 466777777777665543 5666677777777765333233556666777777777765 34455443 45666777777
Q ss_pred ecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094 199 LTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD 251 (377)
Q Consensus 199 l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 251 (377)
+++|.+... +..+..+++|+.|++++|......+..+..+++|+.|++++|+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 777766654 34566666777777766654433333455566666666666553
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=3.2e-14 Score=113.52 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=102.6
Q ss_pred hccCcccEEEeCCCccc--cCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccccc
Q 017094 118 SKSQFLRVLNLRESALE--VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR 195 (377)
Q Consensus 118 ~~~~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 195 (377)
...++|+.|++++|.+. .+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34578999999999987 78888889999999999976 55555 6688899999999998854444788788899999
Q ss_pred EeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhhH---HhcccCcccchhccc
Q 017094 196 VFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLF---EEIEQLSLLRTLLIH 247 (377)
Q Consensus 196 ~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 247 (377)
+|++++|.++..+ ..+..+++|+.|++++|......+ ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999888753 678889999999999987543322 357788888888875
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=1.5e-13 Score=117.23 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=51.4
Q ss_pred ceEeccCCCcccccChhhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccC
Q 017094 147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISG 224 (377)
Q Consensus 147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~ 224 (377)
+.++.++ ..+..+|..+. ++|++|++++|. +..++ ..+..+++|+.|++++|.+... +..+..+++|+.|++++
T Consensus 14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCC-CCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4556654 35556665432 566677776653 33333 3456666666666666666543 34556666666666666
Q ss_pred CCCchhhHHhcccCcccchhccccC
Q 017094 225 CRDLEHLFEEIEQLSLLRTLLIHSY 249 (377)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~l~~~ 249 (377)
|.....-+..+..+++|+.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCHhHccCCCCCCEEECCCC
Confidence 5433211112334444444444443
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=116.85 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=82.2
Q ss_pred CcccEEEeCCCccccCC--cCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEe
Q 017094 121 QFLRVLNLRESALEVCP--RKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVF 197 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 197 (377)
..+++|++++|.+..++ ..+..+++|++|++++| .+..++ ..+..+++|++|++++|......+..+..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 34567777777776553 23667777777777765 344443 356677777777777764333334446677777777
Q ss_pred eecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094 198 ALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD 251 (377)
Q Consensus 198 ~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 251 (377)
++++|.+... +..+..+++|+.|++++|......+..+..+++|+.|++++|+.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 7777776654 35566677777777777665544455666666677776666653
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=7e-14 Score=128.52 Aligned_cols=127 Identities=21% Similarity=0.235 Sum_probs=72.2
Q ss_pred CcccEEEeCCCccccCCcC-cC-CCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccC-chhhcccccccE
Q 017094 121 QFLRVLNLRESALEVCPRK-MG-NLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEEL-PKDIRYLVILRV 196 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~~-~~-~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~ 196 (377)
..++.|+|++|.+..++.. +. .+++|++|++++| .+..++ ..+..+++|++|++++|. +..+ +..+..+++|+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCE
Confidence 3466777777776655433 43 6677777777655 344443 346666777777777653 3333 334566677777
Q ss_pred eeecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHh-c---ccCcccchhccccCC
Q 017094 197 FALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEE-I---EQLSLLRTLLIHSYD 250 (377)
Q Consensus 197 L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-l---~~l~~L~~L~l~~~~ 250 (377)
|++++|.+... +..+..+++|+.|++++|.... ++.. + ..+++|+.|++++|.
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSC
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCC
Confidence 77777666643 3456666677777776665332 2222 2 345555555555543
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=2e-13 Score=116.45 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=92.7
Q ss_pred ceEeccCCCcccccChhhcCCCcccEEeccCccccccC-c-hhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEcc
Q 017094 147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEEL-P-KDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTIS 223 (377)
Q Consensus 147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-p-~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~ 223 (377)
+.++++++ .++.+|..+ .+.+++|++++|. +..+ | ..+..+++|+.|++++|.++..+ ..+..+++|++|+++
T Consensus 14 ~~l~~s~n-~l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCC-CcccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57788754 566777654 3456788888864 4444 3 23677888888888888777654 367778888888888
Q ss_pred CCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccC
Q 017094 224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSL 303 (377)
Q Consensus 224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 303 (377)
+|......+..+..+++|+.|++++|.... -.|..+ ..+++|++|++++|......|..+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITC------------------VGNDSF--IGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCC------------------BCTTSS--TTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCe------------------ECHhHc--CCCccCCEEECCCCcCCEECHHHh
Confidence 776544444446666666666666654322 112223 455666666666655443345566
Q ss_pred CCCccCceecccCccc
Q 017094 304 KDLEALETLAIRGCPK 319 (377)
Q Consensus 304 ~~l~~L~~L~l~~~~~ 319 (377)
..+++|++|++++|+.
T Consensus 150 ~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 150 DTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTCTTCCEEECCSCCE
T ss_pred cCCCCCCEEEecCcCC
Confidence 6666666666666643
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=3.1e-13 Score=115.97 Aligned_cols=128 Identities=22% Similarity=0.271 Sum_probs=55.4
Q ss_pred CcccEEEeCCCccccC-CcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEe
Q 017094 121 QFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVF 197 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L 197 (377)
++|++|++++|.+..+ |..+..+++|++|++++| .+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 3445555555554433 333444455555555543 2333332 2344455555555544 2223322 23444455555
Q ss_pred eecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094 198 ALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD 250 (377)
Q Consensus 198 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 250 (377)
++++|.+...+..+..+++|+.|++++|+.....+..+..+++|+.|++++|+
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 55555444444444444445555544443322111223344444444444443
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.4e-15 Score=147.66 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=76.0
Q ss_pred ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccC
Q 017094 145 HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISG 224 (377)
Q Consensus 145 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 224 (377)
.|+.|++++| .+..+|. ++.+++|++|++++| .+..+|..++.+++|+.|++++|.++..| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 4777888765 5666776 777888888888876 45577777888888888888888777765 777788888888887
Q ss_pred CCCchhh-HHhcccCcccchhccccCCC
Q 017094 225 CRDLEHL-FEEIEQLSLLRTLLIHSYDD 251 (377)
Q Consensus 225 ~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 251 (377)
|...... |..++.+++|+.|++++|..
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 7654443 67777777788877777654
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=1.6e-13 Score=117.69 Aligned_cols=130 Identities=23% Similarity=0.269 Sum_probs=107.5
Q ss_pred CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCccc
Q 017094 94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQ 171 (377)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~ 171 (377)
++|+.|++++|.+.. ..+..+..+++|++|+|++|.+..+|. .+..+++|++|++++| .+..++. .+..+++|+
T Consensus 40 ~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhC
Confidence 889999999987642 334567889999999999999988875 4688999999999976 5566654 467899999
Q ss_pred EEeccCccccccCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCc
Q 017094 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDL 228 (377)
Q Consensus 172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 228 (377)
+|++++| .+..+|..+..+++|+.|++++|.+...+ ..+..+++|+.|++.+|...
T Consensus 116 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 116 ELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999987 56788999999999999999999998765 45788999999999998743
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=7.4e-14 Score=113.82 Aligned_cols=132 Identities=19% Similarity=0.219 Sum_probs=92.0
Q ss_pred ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094 92 YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171 (377)
Q Consensus 92 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 171 (377)
..++|++|++++|... ...++..+..+++|++|++++|.+..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~--~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCB--TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCC--hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3466777777776542 122333456777788888888777766 6777788888888887643333666666688888
Q ss_pred EEeccCccccccCc--hhhcccccccEeeecCcccccCcc----cCCCCCCCCEEEccCCCC
Q 017094 172 TLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQES----GIRSLGSLRCLTISGCRD 227 (377)
Q Consensus 172 ~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~~~~~ 227 (377)
+|++++| .+..+| ..+..+++|+.|++++|.+...+. .+..+++|+.|++.+|..
T Consensus 99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 8888876 455554 567778888888888888776654 677788888888877753
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=1.4e-13 Score=126.49 Aligned_cols=173 Identities=18% Similarity=0.161 Sum_probs=126.0
Q ss_pred cEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhh-ccCcccEEEeCCCccccCC-cCcCCCCccceE
Q 017094 72 RHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFS-KSQFLRVLNLRESALEVCP-RKMGNLKHMRYL 149 (377)
Q Consensus 72 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L 149 (377)
+.+.+.+..+.. +|..+ .+.++.|++++|.+.. .....+. .+++|++|+|++|.+..++ ..+..+++|++|
T Consensus 21 ~~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQSL--PSYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCSS--CCSSC--CTTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCc--cCccC--CCCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 455555554443 23222 3468899999986642 2223355 7899999999999998776 468899999999
Q ss_pred eccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccC----CCCCCCCEEEccC
Q 017094 150 DLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGI----RSLGSLRCLTISG 224 (377)
Q Consensus 150 ~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l----~~l~~L~~L~l~~ 224 (377)
++++| .+..++ ..+..+++|++|++++|......|..+..+++|+.|++++|.+...+..+ ..+++|+.|++++
T Consensus 94 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 94 DLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp ECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred ECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 99987 455554 46788999999999998554445777899999999999999998876544 5789999999999
Q ss_pred CCCchhhHHhcccCcc--cchhccccCCCC
Q 017094 225 CRDLEHLFEEIEQLSL--LRTLLIHSYDDR 252 (377)
Q Consensus 225 ~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 252 (377)
|.....-+..+..++. ++.|++.+|+..
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8765444455667776 478888887753
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1e-13 Score=110.55 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=91.8
Q ss_pred ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094 92 YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171 (377)
Q Consensus 92 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 171 (377)
..++++.|++++|... ...++..+..+++|++|++++|.+..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCB--TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCC--hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3467777777776543 123334467778888888888887766 6777888888888887643333777676788888
Q ss_pred EEeccCccccccCc--hhhcccccccEeeecCcccccCcc----cCCCCCCCCEEEcc
Q 017094 172 TLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQES----GIRSLGSLRCLTIS 223 (377)
Q Consensus 172 ~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~ 223 (377)
+|++++|. +..+| ..+..+++|++|++++|.++..+. .+..+++|+.|+++
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888874 45443 677888888888888888876654 57778888888775
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=7.3e-13 Score=110.40 Aligned_cols=126 Identities=17% Similarity=0.132 Sum_probs=87.0
Q ss_pred cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh--hhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094 124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK--SICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT 201 (377)
Q Consensus 124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 201 (377)
++++++++.+..+|..+.. +|++|++++| .+..++. .+..+++|++|++++|......|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5677777777777765543 7777777765 4555544 267777788888877644444466777777788888887
Q ss_pred cccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCC
Q 017094 202 KQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 202 ~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 252 (377)
|.++..+ ..+..+++|+.|++++|+.....+..+..+++|+.|++++|+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7777554 34677778888888777766555666777777777777777643
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=4.1e-13 Score=110.29 Aligned_cols=129 Identities=15% Similarity=0.182 Sum_probs=77.5
Q ss_pred hcccCCceEEEeecCCchhhHHHHHHHhhccC-cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhh-cCC
Q 017094 90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQ-FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI-CEL 167 (377)
Q Consensus 90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l 167 (377)
+.++++|++|++++|.+... +. +..+. +|++|++++|.+..+ ..+..+++|++|++++| .+..+|+.+ ..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i----~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI----EN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC----CC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred cCCcCCceEEEeeCCCCchh----HH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcC
Confidence 55566777777776654321 12 23333 677777777776665 46666677777777755 444555333 666
Q ss_pred CcccEEeccCccccccCch--hhcccccccEeeecCcccccCccc----CCCCCCCCEEEccCCC
Q 017094 168 QSLQTLDLEGCLELEELPK--DIRYLVILRVFALTTKQKSLQESG----IRSLGSLRCLTISGCR 226 (377)
Q Consensus 168 ~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~l~~~~ 226 (377)
++|++|++++| .+..+|. .+..+++|+.|++++|.+...+.. +..+++|+.|++++|.
T Consensus 88 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 77777777765 3455554 566666666777766666655432 5556666666666554
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=4.9e-13 Score=109.83 Aligned_cols=132 Identities=22% Similarity=0.204 Sum_probs=106.0
Q ss_pred hhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhh-ccccccc
Q 017094 117 FSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDI-RYLVILR 195 (377)
Q Consensus 117 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~ 195 (377)
+..+.+|+.|++++|.+..+|......++|++|++++| .+..+ ..+..+++|++|++++| .+..+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 55678999999999999888653333459999999986 56666 56889999999999997 456666554 8999999
Q ss_pred EeeecCcccccCcc--cCCCCCCCCEEEccCCCCchhhHH----hcccCcccchhccccCCCC
Q 017094 196 VFALTTKQKSLQES--GIRSLGSLRCLTISGCRDLEHLFE----EIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 196 ~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~ 252 (377)
+|++++|.+...+. .+..+++|+.|++++|... .++. .+..+++|+.|+++.+...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999987665 7889999999999998754 3443 3788999999999988653
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=6.5e-14 Score=140.00 Aligned_cols=192 Identities=19% Similarity=0.135 Sum_probs=109.4
Q ss_pred CCceEEEeecCCchhhHHHHHHHhhccCcccEEE-----eCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC
Q 017094 94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLN-----LRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ 168 (377)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~-----L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~ 168 (377)
+.++.|.+.++.... .+..+.....|..+. +..+.+...+..+..+++|+.|++++| .+..+|..+..++
T Consensus 173 ~~~~~l~L~~n~~~~----~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE----ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCC
T ss_pred CccceEEeeCCCCCc----chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCC
Confidence 567788887654322 122222222333333 333344445677889999999999976 5678888888999
Q ss_pred cccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhcccc
Q 017094 169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHS 248 (377)
Q Consensus 169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 248 (377)
+|++|+|++| .+..+|..+..+++|+.|++++|.++.+|..++.+++|+.|++++|.. ..+|..++.+++|+.|++++
T Consensus 248 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 248 FLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCC
Confidence 9999999997 556899999999999999999999998888899999999999999865 57787888999999999988
Q ss_pred CCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCc
Q 017094 249 YDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGC 317 (377)
Q Consensus 249 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 317 (377)
|.... .+|..+.... ..+..+++++|.....+|. .|+.|+++.|
T Consensus 326 N~l~~------------------~~p~~~~~~~-~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEK------------------QFLKILTEKS-VTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SCCCS------------------HHHHHHHHHH-HHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CccCC------------------CChHHHhhcc-hhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 87543 3444431111 1123356777765555554 4556666665
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=3.8e-12 Score=106.06 Aligned_cols=125 Identities=20% Similarity=0.204 Sum_probs=71.3
Q ss_pred cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcc
Q 017094 124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ 203 (377)
Q Consensus 124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 203 (377)
++++++++.+..+|..+. ++|++|++++| .+..+|..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 455666666666655432 46666666654 455566666666666666666653222223446666666666666666
Q ss_pred cccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094 204 KSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD 251 (377)
Q Consensus 204 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 251 (377)
++..+ ..+..+++|+.|++++|......+..+..+++|+.|++++|+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66543 3456666666666666654332223355566666666666553
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=1.5e-14 Score=121.35 Aligned_cols=128 Identities=23% Similarity=0.294 Sum_probs=100.9
Q ss_pred HHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccc
Q 017094 114 ESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVI 193 (377)
Q Consensus 114 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 193 (377)
+..+..+++|++|++++|.+..+| .+..+++|++|++++| .+..+|..+..+++|++|++++| .+..+| .+..+++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC
Confidence 346778889999999999888887 8888899999999876 56678887777889999999987 555566 6888899
Q ss_pred ccEeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhhHH----------hcccCcccchhc
Q 017094 194 LRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLFE----------EIEQLSLLRTLL 245 (377)
Q Consensus 194 L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L~ 245 (377)
|++|++++|.+...+ ..+..+++|+.|++++|......+. .+..+++|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999999888654 3688899999999998875443332 266778888776
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=9.2e-12 Score=112.83 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=52.1
Q ss_pred CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCc-eecccCcccCCCCC-cCCCCCCC
Q 017094 256 RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALE-TLAIRGCPKLSSLP-EDMHHLTT 332 (377)
Q Consensus 256 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~-~L~l~~~~~~~~~~-~~l~~l~~ 332 (377)
+++|++++|.++ .+..++...+ ..+++|+.+++.++ +..++. .|.++++|+ .+++.+ .++.++ ..+.+|++
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF-~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTF-AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCC-CcceecHhhh-hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence 456777777654 3556666554 56777888888764 444443 466777887 887776 344443 55677788
Q ss_pred cCeeeccCC
Q 017094 333 LKLLAIGGC 341 (377)
Q Consensus 333 L~~L~l~~c 341 (377)
|+.|++.++
T Consensus 299 L~~l~l~~n 307 (329)
T 3sb4_A 299 LRYVLATGD 307 (329)
T ss_dssp EEEEEECSS
T ss_pred CCEEEeCCC
Confidence 888877543
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=6.7e-12 Score=104.49 Aligned_cols=126 Identities=21% Similarity=0.141 Sum_probs=96.3
Q ss_pred eEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC--cCCCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094 97 RTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK--MGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD 174 (377)
Q Consensus 97 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 174 (377)
++++++++.+... +..+ ..+|++|++++|.+..++.. +..+++|++|++++|......|..+..+++|++|+
T Consensus 11 ~~l~~s~~~l~~i----p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKEI----PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSSC----CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcCcC----ccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 5677777654321 1111 23889999999999877653 88899999999998754444477888999999999
Q ss_pred ccCccccccCchhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCc
Q 017094 175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDL 228 (377)
Q Consensus 175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 228 (377)
+++|......+..+..+++|++|++++|.++.. +..+..+++|+.|++++|...
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999854444455688899999999999998854 567888999999999998754
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.3e-11 Score=100.35 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=87.2
Q ss_pred CcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094 121 QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL 199 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 199 (377)
++|++|++++|.+..+|..+..+++|++|++++| .+..++ ..+..+++|++|++++|......|..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 5789999999999988888999999999999976 455444 56888999999999987543334456889999999999
Q ss_pred cCcccccCcc-cCCCCCCCCEEEccCCCC
Q 017094 200 TTKQKSLQES-GIRSLGSLRCLTISGCRD 227 (377)
Q Consensus 200 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 227 (377)
++|.++..+. .+..+++|+.|++.+|..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999987764 578899999999998864
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=3.8e-11 Score=98.47 Aligned_cols=104 Identities=28% Similarity=0.353 Sum_probs=50.9
Q ss_pred CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEe
Q 017094 121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVF 197 (377)
Q Consensus 121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L 197 (377)
++|+.|++++|.+..++. .+..+++|++|++++| .+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 355555555555554433 2345555555555544 3333332 2345555555555554 2333332 24455555555
Q ss_pred eecCcccccCccc-CCCCCCCCEEEccCCC
Q 017094 198 ALTTKQKSLQESG-IRSLGSLRCLTISGCR 226 (377)
Q Consensus 198 ~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 226 (377)
++++|.++..+.. +..+++|+.|++++|.
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 5555555544332 3445555555555554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=4e-13 Score=112.54 Aligned_cols=146 Identities=17% Similarity=0.190 Sum_probs=116.3
Q ss_pred CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094 68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR 147 (377)
Q Consensus 68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~ 147 (377)
.-.++...+.+....-..++..+..+++|++|++++|.... ++ .+..+++|++|++++|.+..+|..+..+++|+
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLE 96 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCS
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc----cc-ccccCCCCCEEECCCCCcccccchhhcCCcCC
Confidence 34666666665533333445588999999999999986543 23 67889999999999999999998888889999
Q ss_pred eEeccCCCcccccChhhcCCCcccEEeccCccccccCch--hhcccccccEeeecCcccccCccc-----------CCCC
Q 017094 148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPK--DIRYLVILRVFALTTKQKSLQESG-----------IRSL 214 (377)
Q Consensus 148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~-----------l~~l 214 (377)
+|++++| .+..+| .+..+++|++|++++| .+..++. .+..+++|++|++++|.+...++. +..+
T Consensus 97 ~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 97 ELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp EEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred EEECcCC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 9999986 666676 5889999999999987 4555543 688999999999999988754322 6789
Q ss_pred CCCCEEE
Q 017094 215 GSLRCLT 221 (377)
Q Consensus 215 ~~L~~L~ 221 (377)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 9999997
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=4.4e-10 Score=92.08 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=96.0
Q ss_pred ccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEeeec
Q 017094 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALT 200 (377)
Q Consensus 123 L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~ 200 (377)
.+.++++++.+..+|..+. ++|++|++++|. +..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECC
Confidence 4678888888888875543 789999999764 555554 4678899999999987 4555554 46889999999999
Q ss_pred CcccccCcc-cCCCCCCCCEEEccCCCCchhhHH-hcccCcccchhccccCCCC
Q 017094 201 TKQKSLQES-GIRSLGSLRCLTISGCRDLEHLFE-EIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 201 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~ 252 (377)
+|.++..+. .+..+++|+.|++++|... .++. .+..+++|+.|++++|+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 998887654 4678999999999988754 3443 4577889999999988754
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=1.1e-10 Score=105.59 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCcc-EEeecC
Q 017094 214 LGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLH-TLVIGD 292 (377)
Q Consensus 214 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~-~L~l~~ 292 (377)
+++|+.+++.+|+...--..++..|++|+.+.+.++ +..++...+ ..+++|+ .+.+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--------------------i~~I~~~aF-~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--------------------LKTIGQRVF-SNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--------------------CCEECTTTT-TTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--------------------cceehHHHh-hCChhccEEEEEcc
Confidence 789999999987643322345778888888888664 235555444 6778898 999987
Q ss_pred CCCCCCC-CccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeeec
Q 017094 293 CPNFMAL-PGSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAI 338 (377)
Q Consensus 293 ~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 338 (377)
.+..+ +..|.++++|+.+++..+ .++.++ ..+.++++|+.|+.
T Consensus 284 --~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 --SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred --cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 34455 456889999999999876 455554 46788889988864
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=4.5e-10 Score=91.42 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=81.5
Q ss_pred cccEEEeCCCccccCCcCcCCCCccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCchh-hcccccccEeee
Q 017094 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFAL 199 (377)
Q Consensus 122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l 199 (377)
..+.++++++.+..+|..+. ++|++|++++| .+..+ |..+..+++|++|++++| .+..+|.. +..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 35788999999988887664 88999999976 45544 667888999999999987 45566554 588999999999
Q ss_pred cCcccccCcc-cCCCCCCCCEEEccCCCC
Q 017094 200 TTKQKSLQES-GIRSLGSLRCLTISGCRD 227 (377)
Q Consensus 200 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 227 (377)
++|.++..+. .+..+++|+.|++++|..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 9999887764 478889999999988864
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=4.8e-10 Score=91.58 Aligned_cols=100 Identities=23% Similarity=0.270 Sum_probs=78.9
Q ss_pred cEEEeCCCccccCCcCcCCCCccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCchh-hcccccccEeeecC
Q 017094 124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFALTT 201 (377)
Q Consensus 124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~ 201 (377)
+.++++++.+..+|..+. ++|++|++++|. +..+ |..+..+++|++|++++| .+..+|.. +..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 678888888888887664 788999998764 4444 667888899999999887 56666654 57888999999999
Q ss_pred cccccCccc-CCCCCCCCEEEccCCCC
Q 017094 202 KQKSLQESG-IRSLGSLRCLTISGCRD 227 (377)
Q Consensus 202 ~~~~~~~~~-l~~l~~L~~L~l~~~~~ 227 (377)
|.+...+.. +..+++|+.|++++|..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCc
Confidence 888877654 78888899999888764
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=2.6e-09 Score=99.06 Aligned_cols=149 Identities=14% Similarity=0.184 Sum_probs=92.3
Q ss_pred hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCC
Q 017094 89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICEL 167 (377)
Q Consensus 89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l 167 (377)
+|.++ +|+.+.+..+ .. ..-..+|..+ +|+.+.+.. .+..++ .++..|++|+.+++..+ .+..++.....+
T Consensus 131 aF~~~-~L~~i~l~~~-i~---~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~ 202 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LK---SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVY 202 (401)
T ss_dssp TTTTC-CCSEEECCTT-CC---EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTT
T ss_pred hcccC-CccEEEeCCC-cc---EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEee
Confidence 56665 6888887654 11 1112234443 588888876 455443 56778888888888754 566666655556
Q ss_pred CcccEEeccCccccccC-chhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhh-HHhcccCcccchhc
Q 017094 168 QSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHL-FEEIEQLSLLRTLL 245 (377)
Q Consensus 168 ~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~ 245 (377)
.+|+.+.+..+ +..+ ...+.++++|+.+.+..+-.......+.. .+|+.+.+..+ +..+ ..++..|++|+.+.
T Consensus 203 ~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEE
Confidence 78888888643 4444 34567788888888876532222234444 67888887542 2223 34566777888887
Q ss_pred cccCC
Q 017094 246 IHSYD 250 (377)
Q Consensus 246 l~~~~ 250 (377)
+.++.
T Consensus 278 l~~~~ 282 (401)
T 4fdw_A 278 TYGST 282 (401)
T ss_dssp EESSC
T ss_pred eCCcc
Confidence 76654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=2.3e-10 Score=105.18 Aligned_cols=160 Identities=15% Similarity=0.062 Sum_probs=87.7
Q ss_pred cCCceEEEeecCCchhh-HHHHHHHhh-ccCcccEEEeCCCcccc--CCcCcCCCCccceEeccCCCcccccCh----hh
Q 017094 93 LGRLRTIFFSTDDEKTS-QSFVESCFS-KSQFLRVLNLRESALEV--CPRKMGNLKHMRYLDLSRNSKIKKLPK----SI 164 (377)
Q Consensus 93 ~~~L~~L~l~~~~~~~~-~~~~~~~~~-~~~~L~~L~L~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~l~~----~~ 164 (377)
+++|+.|++++|.+... ...+...+. ...+|++|+|++|.+.. .......+++|++|++++|........ .+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45677777777655421 122222233 22577777777776642 222223455677777776532221111 12
Q ss_pred -cCCCcccEEeccCccccc----cCchhhcccccccEeeecCcccccC-----cccCCCCCCCCEEEccCCCCchh----
Q 017094 165 -CELQSLQTLDLEGCLELE----ELPKDIRYLVILRVFALTTKQKSLQ-----ESGIRSLGSLRCLTISGCRDLEH---- 230 (377)
Q Consensus 165 -~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~---- 230 (377)
...++|++|++++|.... .++..+..+++|++|++++|.+... ...+..+++|++|++++|.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234667777777763221 2344456667777777777766532 23445566777777777765432
Q ss_pred hHHhcccCcccchhccccCCCC
Q 017094 231 LFEEIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 231 ~~~~l~~l~~L~~L~l~~~~~~ 252 (377)
+...+..+++|++|++++|...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 3334445667777777776543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=2.8e-09 Score=86.67 Aligned_cols=105 Identities=17% Similarity=0.123 Sum_probs=85.3
Q ss_pred ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCccc-CCCCCCCCEEEcc
Q 017094 145 HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESG-IRSLGSLRCLTIS 223 (377)
Q Consensus 145 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~ 223 (377)
..+.++++++ .+..+|..+ .++|++|++++|......|..+..+++|++|++++|.++..+.. +..+++|+.|+++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999965 778888765 48999999999844444477789999999999999999987654 6899999999999
Q ss_pred CCCCchhhHHhcccCcccchhccccCCCC
Q 017094 224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 252 (377)
+|+.....+..+..+++|+.|++++|+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 98765444445888999999999998754
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=3e-09 Score=86.85 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=84.4
Q ss_pred cceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCccc-CCCCCCCCEEEccC
Q 017094 146 MRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESG-IRSLGSLRCLTISG 224 (377)
Q Consensus 146 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~ 224 (377)
-+.++++++ .+..+|..+. ++|++|++++|......|..+..+++|++|++++|.++..+.. +..+++|+.|++++
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378899864 6788887664 8999999999854444477889999999999999999988654 58999999999999
Q ss_pred CCCchhhHHhcccCcccchhccccCCCC
Q 017094 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 252 (377)
|+.....+..+..+++|+.|++++|+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8765433334888999999999998754
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.90 E-value=5.8e-10 Score=102.48 Aligned_cols=167 Identities=14% Similarity=0.038 Sum_probs=118.1
Q ss_pred CCCcEEEEEeccccccc---hhhhhc-ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-----CcC
Q 017094 69 KRVRHLSFAAANALRND---FSSLLS-YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-----PRK 139 (377)
Q Consensus 69 ~~l~~L~l~~~~~~~~~---~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-----~~~ 139 (377)
+.++.|++.++.+.... +...+. ..++|++|++++|.+. ..........+++|+.|+|++|.+... ...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 47889999988876533 222232 2379999999998754 344444455667899999999988632 222
Q ss_pred c-CCCCccceEeccCCCccc----ccChhhcCCCcccEEeccCccccc----cCchhhcccccccEeeecCcccccCc--
Q 017094 140 M-GNLKHMRYLDLSRNSKIK----KLPKSICELQSLQTLDLEGCLELE----ELPKDIRYLVILRVFALTTKQKSLQE-- 208 (377)
Q Consensus 140 ~-~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~-- 208 (377)
+ ...++|++|++++|.... .++..+..+++|++|++++|.... .++..+..+++|+.|++++|.++...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2 346789999999874322 355566788999999999985322 23556778889999999999887431
Q ss_pred ---ccCCCCCCCCEEEccCCCCchhhHHhccc
Q 017094 209 ---SGIRSLGSLRCLTISGCRDLEHLFEEIEQ 237 (377)
Q Consensus 209 ---~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 237 (377)
..+...++|++|++++|.........+..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 34556789999999999876655444433
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=1.6e-07 Score=87.00 Aligned_cols=233 Identities=15% Similarity=0.157 Sum_probs=137.1
Q ss_pred hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccC-hhhcCC
Q 017094 90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLP-KSICEL 167 (377)
Q Consensus 90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l 167 (377)
+..+..++.+.+...-. ..-..+|..+ +|+.+.+..+ +..++ .++.++ +|+.+.+.. .+..++ .+|..|
T Consensus 109 ~~~~~~l~~i~ip~~i~----~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c 179 (401)
T 4fdw_A 109 TEILKGYNEIILPNSVK----SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYC 179 (401)
T ss_dssp EEECSSCSEEECCTTCC----EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTC
T ss_pred EEecCCccEEEECCccC----EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCc
Confidence 34456777777664311 1112335554 6888887765 44443 345554 588888873 455444 467778
Q ss_pred CcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhH-HhcccCcccchhcc
Q 017094 168 QSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF-EEIEQLSLLRTLLI 246 (377)
Q Consensus 168 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 246 (377)
++|+.+++.++ .+..++.....+.+|+.+.+..+-.......+..+++|+.+.+..+ +..+. .++.. .+|+.+.+
T Consensus 180 ~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE
T ss_pred ccCCeeecCCC-cceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe
Confidence 88888888765 5666665554567888888876533333456777888888888653 22222 22333 56777766
Q ss_pred ccCCC-Cc----cCCCccceEEeccccc----ccccchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCCccCceecccC
Q 017094 247 HSYDD-RK----NTRPRLRRVFIKEITQ----LLELPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDLEALETLAIRG 316 (377)
Q Consensus 247 ~~~~~-~~----~~~~~L~~L~l~~~~~----~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~ 316 (377)
..+-. .. ..+++|+.+.+.+... ...++...+ ..|++|+.+.+.+ .+..++ ..|.++.+|+.+.|..
T Consensus 256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL-EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT
T ss_pred CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc
Confidence 43210 00 3355777777765321 123444433 5667788887774 244443 3466778888888854
Q ss_pred cccCCCCC-cCCCCCCCcCeeeccCC
Q 017094 317 CPKLSSLP-EDMHHLTTLKLLAIGGC 341 (377)
Q Consensus 317 ~~~~~~~~-~~l~~l~~L~~L~l~~c 341 (377)
+ ++.++ ..+..+ +|+.+++.++
T Consensus 333 ~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 333 N--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp T--CCEECTTSSSSS-CCCEEEECCS
T ss_pred c--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 3 44443 445666 8888888776
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=1.4e-08 Score=92.37 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=75.5
Q ss_pred EEEeCCC-ccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeeecCc
Q 017094 125 VLNLRES-ALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTK 202 (377)
Q Consensus 125 ~L~L~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 202 (377)
.++.+++ .+..+|. +..+++|++|+|++++.+..+| ..+..+++|++|+|++|......|..+.++++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577776 7888888 8888888888888523566555 56778888888888887544444556788888888888888
Q ss_pred ccccCcccCCCCCCCCEEEccCCCC
Q 017094 203 QKSLQESGIRSLGSLRCLTISGCRD 227 (377)
Q Consensus 203 ~~~~~~~~l~~l~~L~~L~l~~~~~ 227 (377)
.+...+..+.....|+.|++.+|..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 8887765544444488888888764
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=1.6e-08 Score=92.26 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=51.1
Q ss_pred CCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhc--ccccccEeeecCc--c------cccCccc
Q 017094 141 GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIR--YLVILRVFALTTK--Q------KSLQESG 210 (377)
Q Consensus 141 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~--~l~~L~~L~l~~~--~------~~~~~~~ 210 (377)
..+++|+.|++++|... .++. + .+++|++|++..|.........+. .+++|++|+++.+ . .......
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 44455555555543211 2222 2 255566666654432111111222 4566666665421 1 1011111
Q ss_pred C--CCCCCCCEEEccCCCCchhhHHhc---ccCcccchhccccCC
Q 017094 211 I--RSLGSLRCLTISGCRDLEHLFEEI---EQLSLLRTLLIHSYD 250 (377)
Q Consensus 211 l--~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~ 250 (377)
+ ..+++|+.|++.+|......+..+ ..+++|++|+++.|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 2 347788888888777654433333 246677777776554
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=1.1e-08 Score=93.20 Aligned_cols=182 Identities=10% Similarity=0.114 Sum_probs=115.5
Q ss_pred CCCcEEEEEecccc--c-----cchhhhhcccCCceEEEeecCCchh-----h-HHHHHHHhhccCcccEEEeCCCcccc
Q 017094 69 KRVRHLSFAAANAL--R-----NDFSSLLSYLGRLRTIFFSTDDEKT-----S-QSFVESCFSKSQFLRVLNLRESALEV 135 (377)
Q Consensus 69 ~~l~~L~l~~~~~~--~-----~~~~~~~~~~~~L~~L~l~~~~~~~-----~-~~~~~~~~~~~~~L~~L~L~~~~~~~ 135 (377)
..++.|.+...... . ..+..+...+++|+.|.+.+..... . ...+...+..+++|+.|+|+++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 46778877754332 1 1123446678999999987642210 0 11345667889999999999874334
Q ss_pred CCcCcCCCCccceEeccCCCcccccChhhc--CCCcccEEeccCccc-------cccCchhh--cccccccEeeecCccc
Q 017094 136 CPRKMGNLKHMRYLDLSRNSKIKKLPKSIC--ELQSLQTLDLEGCLE-------LEELPKDI--RYLVILRVFALTTKQK 204 (377)
Q Consensus 136 l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~--~l~~L~~L~l~~~~~-------~~~~p~~l--~~l~~L~~L~l~~~~~ 204 (377)
++. + .+++|+.|++..|.........+. .+++|++|+|+.+.. +..+...+ ..+++|++|++.+|.+
T Consensus 187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 544 3 388999999986642222222333 789999999863211 22222223 3589999999999887
Q ss_pred ccCc----ccCCCCCCCCEEEccCCCCchh----hHHhcccCcccchhccccCCCC
Q 017094 205 SLQE----SGIRSLGSLRCLTISGCRDLEH----LFEEIEQLSLLRTLLIHSYDDR 252 (377)
Q Consensus 205 ~~~~----~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 252 (377)
.... .....+++|++|+++.|..... ++..+..+++|+.|+++.|...
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 6321 1224688999999998876553 3333456678888888776543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=1.6e-07 Score=85.34 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=40.5
Q ss_pred hhccCcccEEEeCC-CccccCC-cCcCCCCccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCchhhccccc
Q 017094 117 FSKSQFLRVLNLRE-SALEVCP-RKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPKDIRYLVI 193 (377)
Q Consensus 117 ~~~~~~L~~L~L~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 193 (377)
+..+.+|+.|+|++ |.+..++ ..+..+++|++|+|++| .+..+ |..|..+++|++|+|++| .+..+|..+.....
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC
Confidence 44445555555553 5555443 34555555555555544 23322 234455555555555554 33344333222222
Q ss_pred ccEeeecCcccc
Q 017094 194 LRVFALTTKQKS 205 (377)
Q Consensus 194 L~~L~l~~~~~~ 205 (377)
|+.|++.+|.+.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 555555555443
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=1.9e-06 Score=79.65 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=72.6
Q ss_pred hhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccceEeccCCCccccc-----
Q 017094 87 SSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKL----- 160 (377)
Q Consensus 87 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l----- 160 (377)
..+|.+|.+|+++.+..+ . ...-..+|..|.+|+.+++..+ +..+ ..++..+.+|+.+.+.. .+..+
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~aF 136 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIGVEAF 136 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred HHHhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeecceee
Confidence 347888899999988643 2 1122346888889999988654 3333 23566667776666542 11111
Q ss_pred ------------------ChhhcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccCcccCCCCCCCCEEE
Q 017094 161 ------------------PKSICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLT 221 (377)
Q Consensus 161 ------------------~~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 221 (377)
..+|..+++|+.+.+..+ +..+ ...+.++.+|+.+.+..+-.......+..+..|+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeCchhhccccccceee
Confidence 123555666666666542 2222 2345566667766666543222234555566666555
Q ss_pred ccC
Q 017094 222 ISG 224 (377)
Q Consensus 222 l~~ 224 (377)
+..
T Consensus 215 ~~~ 217 (394)
T 4fs7_A 215 FPN 217 (394)
T ss_dssp CCT
T ss_pred cCC
Confidence 443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=1.8e-06 Score=79.96 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=49.6
Q ss_pred CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCCccCceecccCcccCCCCC-cCCCCCCCc
Q 017094 256 RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTL 333 (377)
Q Consensus 256 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L 333 (377)
+..|+.+.+. ..+..++...+ ..|.+|+.+.+..+ +..+. .+|.++.+|+.+.+-. .++.+. ..+.+|++|
T Consensus 287 c~~L~~i~l~--~~i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 287 CPALQDIEFS--SRITELPESVF-AGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTAL 359 (394)
T ss_dssp CTTCCEEECC--TTCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTC
T ss_pred ccccccccCC--CcccccCceee-cCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCC
Confidence 4456666664 24455655544 56677888887642 33443 3466788888888854 245554 346778888
Q ss_pred CeeeccCCC
Q 017094 334 KLLAIGGCP 342 (377)
Q Consensus 334 ~~L~l~~c~ 342 (377)
+.+++.+..
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 888877653
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=2.9e-07 Score=75.69 Aligned_cols=68 Identities=4% Similarity=0.085 Sum_probs=33.3
Q ss_pred hhhhcccCCceEEEeecC-Cchh-hHHHHHHHhhccCcccEEEeCCCcccc-----CCcCcCCCCccceEeccCC
Q 017094 87 SSLLSYLGRLRTIFFSTD-DEKT-SQSFVESCFSKSQFLRVLNLRESALEV-----CPRKMGNLKHMRYLDLSRN 154 (377)
Q Consensus 87 ~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~l~~L~~L~l~~~ 154 (377)
...+...+.|++|++++| .++. ....+...+...++|++|+|++|.+.. +...+...++|++|++++|
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 344555666666666665 4431 222333445555566666666665531 2222333344555555543
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.37 E-value=1.9e-06 Score=79.74 Aligned_cols=214 Identities=13% Similarity=0.087 Sum_probs=127.4
Q ss_pred HHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhccccc
Q 017094 115 SCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVI 193 (377)
Q Consensus 115 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 193 (377)
.+|..+.+|+.+.+.++...--...+..+.+|+.+.+..+ +..++ .++..+..|+.+.+..+ ...+.........
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCC
Confidence 3577888888888876543322346777888888888642 44433 35666777777776543 2223333344556
Q ss_pred ccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc---cCCCccceEEecccccc
Q 017094 194 LRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK---NTRPRLRRVFIKEITQL 270 (377)
Q Consensus 194 L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~L~~L~l~~~~~~ 270 (377)
|+.+.+..+........+..+..|+.+.+..+.. .-....+..+..++........... ..+.+|+.+.+.+ .+
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~--~i 308 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD--SV 308 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT--TC
T ss_pred CceEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecccccccccccccccccc--cc
Confidence 7777666543333334566677777777655321 1111233445555555443332221 2345677776653 35
Q ss_pred cccchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeeeccC
Q 017094 271 LELPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAIGG 340 (377)
Q Consensus 271 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~ 340 (377)
..++...+ ..+.+|+.+++.++ +..++ .+|.++.+|+.+.+..+ ++.++ ..+.+|++|+.+++..
T Consensus 309 ~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 309 KFIGEEAF-ESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECTTTT-TTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred ceechhhh-cCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 55655544 56788999988642 44443 45778899999988654 45444 4567888999988854
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=2.8e-07 Score=74.32 Aligned_cols=88 Identities=13% Similarity=0.262 Sum_probs=62.1
Q ss_pred CccceEEeccccccccc-chhhhhcCCCCccEEeecCCCCCCCC-CccCCC----CccCceecccCcccCCCCC-cCCCC
Q 017094 257 PRLRRVFIKEITQLLEL-PQWLLQCCTDTLHTLVIGDCPNFMAL-PGSLKD----LEALETLAIRGCPKLSSLP-EDMHH 329 (377)
Q Consensus 257 ~~L~~L~l~~~~~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~----l~~L~~L~l~~~~~~~~~~-~~l~~ 329 (377)
..|++|++++|. +++. -..+ ..+++|++|++++|..++.- -..+.. .++|++|+|++|..+++-. ..+..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM--EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG--TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCC-ccHHHHHHh--cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 356777777765 3332 2233 67899999999999865532 112333 3579999999998887421 23567
Q ss_pred CCCcCeeeccCCCCcccc
Q 017094 330 LTTLKLLAIGGCPALSER 347 (377)
Q Consensus 330 l~~L~~L~l~~c~~l~~~ 347 (377)
+++|+.|++++|+.+++.
T Consensus 138 ~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CTTCCEEEEESCTTCCCH
T ss_pred CCCCCEEECCCCCCCCch
Confidence 899999999999999985
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=6.9e-07 Score=73.42 Aligned_cols=118 Identities=9% Similarity=0.094 Sum_probs=73.6
Q ss_pred hHHHHHHHhhccCcccEEEeCCC-ccc-----cCCcCcCCCCccceEeccCCCccc----ccChhhcCCCcccEEeccCc
Q 017094 109 SQSFVESCFSKSQFLRVLNLRES-ALE-----VCPRKMGNLKHMRYLDLSRNSKIK----KLPKSICELQSLQTLDLEGC 178 (377)
Q Consensus 109 ~~~~~~~~~~~~~~L~~L~L~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~ 178 (377)
....+...+...+.|+.|+|++| .+. .+...+...++|++|++++|.... .+...+...++|++|++++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 35566677888999999999998 765 344556667888888888764322 23444555677888888876
Q ss_pred ccccc----CchhhcccccccEeee--cCcccccC-----cccCCCCCCCCEEEccCCC
Q 017094 179 LELEE----LPKDIRYLVILRVFAL--TTKQKSLQ-----ESGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 179 ~~~~~----~p~~l~~l~~L~~L~l--~~~~~~~~-----~~~l~~l~~L~~L~l~~~~ 226 (377)
..-.. +...+...++|++|++ ++|.+... ...+...++|++|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 32221 3344555666777777 55655432 1233444566666666654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=2.3e-06 Score=68.97 Aligned_cols=17 Identities=12% Similarity=0.344 Sum_probs=9.6
Q ss_pred CCCCCCCCEEEccCCCC
Q 017094 211 IRSLGSLRCLTISGCRD 227 (377)
Q Consensus 211 l~~l~~L~~L~l~~~~~ 227 (377)
+..+++|+.|++++|..
T Consensus 81 L~~~~~L~~L~L~~C~~ 97 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHY 97 (176)
T ss_dssp GTTCSCCCEEEEESCTT
T ss_pred hcCCCCCCEEEeCCCCc
Confidence 44555666666666643
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.13 E-value=7.4e-05 Score=68.93 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=45.3
Q ss_pred CccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccCCCCC-cCCCCCCCcC
Q 017094 257 PRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLK 334 (377)
Q Consensus 257 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~ 334 (377)
..|+.+.+.+ ....+....+ ..+++|+.+.+.. .+..+++ .|.++.+|+.+.|..+ ++.+. ..+..|.+|+
T Consensus 265 ~~L~~i~lp~--~~~~I~~~aF-~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 265 AYLASVKMPD--SVVSIGTGAF-MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLE 337 (394)
T ss_dssp SSCCEEECCT--TCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred ccccEEeccc--ccceecCccc-ccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCC
Confidence 4455555533 1223333333 4567778777753 2444443 4667888998888643 45443 4467788888
Q ss_pred eeecc
Q 017094 335 LLAIG 339 (377)
Q Consensus 335 ~L~l~ 339 (377)
.+.+-
T Consensus 338 ~i~ip 342 (394)
T 4gt6_A 338 RIAIP 342 (394)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88873
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=1.9e-06 Score=74.61 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=46.8
Q ss_pred hhccCcccEEEeCCCccccC---CcCcCCCCccceEeccCCCcccccChhhcCCC--cccEEeccCccccccCc------
Q 017094 117 FSKSQFLRVLNLRESALEVC---PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ--SLQTLDLEGCLELEELP------ 185 (377)
Q Consensus 117 ~~~~~~L~~L~L~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~~~~~~p------ 185 (377)
...+++|+.|+|++|.+..+ |..+..+++|+.|++++| .+..+. .+..++ +|++|++++|.....+|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 35677777777777776643 344556777777777755 444332 233333 67777777765444333
Q ss_pred -hhhcccccccEee
Q 017094 186 -KDIRYLVILRVFA 198 (377)
Q Consensus 186 -~~l~~l~~L~~L~ 198 (377)
..+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2245556666554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.82 E-value=0.00068 Score=62.00 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=14.1
Q ss_pred CCCCccCceecccCcccCCCCC-cCCCCCCCcCeeec
Q 017094 303 LKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAI 338 (377)
Q Consensus 303 ~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 338 (377)
|.++.+|+.+.|.. .++.+. ..+.+|++|+.+.+
T Consensus 306 F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 306 FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 44445555555432 123222 22344444544444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=7.3e-05 Score=64.67 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=52.5
Q ss_pred cCCCcccEEeccCccccc--cCchhhcccccccEeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhh-------HH
Q 017094 165 CELQSLQTLDLEGCLELE--ELPKDIRYLVILRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHL-------FE 233 (377)
Q Consensus 165 ~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~-------~~ 233 (377)
..+++|+.|+|++|.... .+|..+..+++|+.|++++|.+.... ..+..+ +|++|++.+|.....+ ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 357788888888764322 34455667888888888888777542 233333 8888888888765422 23
Q ss_pred hcccCcccchhcc
Q 017094 234 EIEQLSLLRTLLI 246 (377)
Q Consensus 234 ~l~~l~~L~~L~l 246 (377)
.+..+++|+.|+=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4566777777753
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.45 E-value=0.0023 Score=58.44 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=47.2
Q ss_pred CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccCCCCC-cCCCCCCCc
Q 017094 256 RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKLSSLP-EDMHHLTTL 333 (377)
Q Consensus 256 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L 333 (377)
+..|+.+.+.. .+..+....+ ..+.+|+.+.+... +..++. .+.++.+|+.+.+.++ .++.++ ..+.+|++|
T Consensus 239 ~~~L~~i~lp~--~v~~I~~~aF-~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 239 MKALDEIAIPK--NVTSIGSFLL-QNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKL 312 (379)
T ss_dssp CSSCCEEEECT--TCCEECTTTT-TTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTC
T ss_pred CccceEEEcCC--CccEeCcccc-ceeehhcccccccc--ceecccccccccccccccccccc-ccceehhhhhcCCCCC
Confidence 34566666543 2444444333 55677888887642 344433 4667888888888754 344443 446677888
Q ss_pred Ceeecc
Q 017094 334 KLLAIG 339 (377)
Q Consensus 334 ~~L~l~ 339 (377)
+.+.+.
T Consensus 313 ~~i~lp 318 (379)
T 4h09_A 313 SSVTLP 318 (379)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 888773
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.10 E-value=0.00016 Score=69.75 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=41.5
Q ss_pred Ccc--cccccCCCCCCHHHHHHHHHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHHHhhc
Q 017094 1 MAH--GLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNS 62 (377)
Q Consensus 1 iae--g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~ 62 (377)
+|| |||...+.+...+++++ ||++|++++|++....+ ....|+|||++|++++++..
T Consensus 411 ~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~----~~~~~~mHdlv~~~a~~~~~ 469 (549)
T 2a5y_B 411 SCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM----PVLTFKIDHIIHMFLKHVVD 469 (549)
T ss_dssp HHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS----SSCEEECCHHHHHHHHTTSC
T ss_pred eeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC----CceEEEeChHHHHHHHHHHH
Confidence 467 99988754778899998 99999999999987532 34689999999999987554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.71 E-value=0.0019 Score=52.86 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=35.2
Q ss_pred hhhhcccCCceEEEeecC-Cch-hhHHHHHHHhhccCcccEEEeCCCcccc-----CCcCcCCCCccceEeccCC
Q 017094 87 SSLLSYLGRLRTIFFSTD-DEK-TSQSFVESCFSKSQFLRVLNLRESALEV-----CPRKMGNLKHMRYLDLSRN 154 (377)
Q Consensus 87 ~~~~~~~~~L~~L~l~~~-~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~l~~L~~L~l~~~ 154 (377)
......-+.|++|+++++ ..+ .....+...+..-..|+.|+|++|.+.. +...+..-+.|+.|+|++|
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 334455566777776653 433 1223344455566666777776666541 1222233345566666544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.02 E-value=0.0094 Score=48.70 Aligned_cols=110 Identities=11% Similarity=0.078 Sum_probs=76.9
Q ss_pred CCCcEEEEEec-cccc---cchhhhhcccCCceEEEeecCCch-hhHHHHHHHhhccCcccEEEeCCCccc-----cCCc
Q 017094 69 KRVRHLSFAAA-NALR---NDFSSLLSYLGRLRTIFFSTDDEK-TSQSFVESCFSKSQFLRVLNLRESALE-----VCPR 138 (377)
Q Consensus 69 ~~l~~L~l~~~-~~~~---~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~ 138 (377)
+.+++|.+..+ .+.. ..+..++..-+.|+.|++++|.++ .....+...+..-+.|+.|+|++|.+. .+-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 48899999864 5543 234567778899999999999876 234456667888899999999999986 3344
Q ss_pred CcCCCCccceEeccCCC--ccc-----ccChhhcCCCcccEEeccCc
Q 017094 139 KMGNLKHMRYLDLSRNS--KIK-----KLPKSICELQSLQTLDLEGC 178 (377)
Q Consensus 139 ~~~~l~~L~~L~l~~~~--~~~-----~l~~~~~~l~~L~~L~l~~~ 178 (377)
.+..-+.|++|+++++. .++ .+...+..-+.|+.|+++.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 55556678999997432 122 23334455567777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.68 E-value=0.14 Score=38.60 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=29.6
Q ss_pred EEEeCCCccc--cCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCcc
Q 017094 125 VLNLRESALE--VCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCL 179 (377)
Q Consensus 125 ~L~L~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 179 (377)
.++-++..++ .+|..+. ++|++|+|++| .+..+|. .+..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 5556666665 5654432 35667777654 4555544 34556666666666653
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.28 E-value=0.41 Score=36.03 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=35.1
Q ss_pred EEeccCccccc--cCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccCCC
Q 017094 172 TLDLEGCLELE--ELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCR 226 (377)
Q Consensus 172 ~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~ 226 (377)
.++-++. .+. .+|..+ .++|+.|++++|.++.++ ..+..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5566653 445 677543 246888888888888765 345667788888887775
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=81.15 E-value=1.3 Score=46.66 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHHH
Q 017094 16 EDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALL 59 (377)
Q Consensus 16 ~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~~ 59 (377)
++.++.++++|++++|++... . +....|+|||++|++++.
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~-~---~~~~~~~~h~l~~~~~~~ 447 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR-N---GKSFCYYLHDLQVDFLTE 447 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE-S---SSSEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccceEEec-C---CCceEEEecHHHHHHHHh
Confidence 577899999999999999653 3 455679999999999987
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=71.95 E-value=3.6 Score=39.51 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHHHh
Q 017094 17 DIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60 (377)
Q Consensus 17 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~~~ 60 (377)
+.+..++++|++++|++... + +....|.||+++++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~-~---~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDR-N---GKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEE-E---TTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCeEEec-C---CCccEEEEcHHHHHHHHhh
Confidence 45788999999999999643 2 4456899999999999774
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=54.99 E-value=7.8 Score=40.06 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHH
Q 017094 17 DIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLAL 58 (377)
Q Consensus 17 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~ 58 (377)
+.++.+|++|++++|++.. +....|+|||+++++..
T Consensus 402 edAe~~L~eLvdRSLLq~d------~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQ------PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBC------SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEe------CCCCEEEehHHHHHHhc
Confidence 4688999999999999984 22357999999998653
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.98 E-value=97 Score=21.50 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=17.6
Q ss_pred hhcCCCcccEEeccCccccccC-chhhcccccccEeeecC
Q 017094 163 SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTT 201 (377)
Q Consensus 163 ~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~ 201 (377)
+|..|.+|+.+.|-. .+..+ ...+.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 355556666665543 23333 22344555555555543
Done!