BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017095
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric
Cell Cycle Transcription Factor E2f-Dp
Length = 76
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Query: 65 PAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLI 123
P R++ SLGLLT KF++L++ A+DG+LDL AA+TL V QKRRIYDITNVLEGIGLI
Sbjct: 2 PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLI 61
Query: 124 EKKLKNRIRWKGL 136
EKK KN I+WKG+
Sbjct: 62 EKKSKNSIQWKGV 74
>pdb|2AZE|B Chain B, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1
Heterodimer
Length = 106
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 187 KWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPID 246
+ +VT +D++++ Q ++ IKAP T L+ D E ++I L+S GPID
Sbjct: 47 RLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSE-------NFQISLKSKQGPID 99
Query: 247 VYLV 250
V+L
Sbjct: 100 VFLC 103
>pdb|3KWV|C Chain C, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|F Chain F, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
Length = 263
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 282 VKEIINVDRAGNET---EAQAQQAHQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSD 338
+K I+ ++ G E EA + ++ SD+ + +GG + IV D+ LS+
Sbjct: 40 MKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMYKAIGGKIYIVDGDITKHISLEALSE 99
Query: 339 ADVSITDMWKTDCILH 354
I D++ D +LH
Sbjct: 100 DKKKIKDIYGKDALLH 115
>pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
pdb|1PWP|A Chain A, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWP|B Chain B, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWQ|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWQ|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWV|A Chain A, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1PWV|B Chain B, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1ZXV|A Chain A, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid.
pdb|1ZXV|B Chain B, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid
Length = 776
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 282 VKEIINVDRAGNET---EAQAQQAHQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSD 338
+K I+ ++ G E EA + ++ SD+ + +GG + IV D+ LS+
Sbjct: 40 MKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMYKAIGGKIYIVDGDITKHISLEALSE 99
Query: 339 ADVSITDMWKTDCILH 354
I D++ D +LH
Sbjct: 100 DKKKIKDIYGKDALLH 115
>pdb|1PWU|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWU|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWW|A Chain A, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc.
pdb|1PWW|B Chain B, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc
Length = 776
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 282 VKEIINVDRAGNET---EAQAQQAHQIYSDLNSSQEVVGGMMKIVPSDVDNDADYWLLSD 338
+K I+ ++ G E EA + ++ SD+ + +GG + IV D+ LS+
Sbjct: 40 MKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMYKAIGGKIYIVDGDITKHISLEALSE 99
Query: 339 ADVSITDMWKTDCILH 354
I D++ D +LH
Sbjct: 100 DKKKIKDIYGKDALLH 115
>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric
Cell Cycle Transcription Factor E2f-Dp
Length = 95
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 107 KRRIYDITNVLEGIGLIEKKLKNRIRWKGL 136
+RR+YD NVL + +I K+ K I+W GL
Sbjct: 61 RRRVYDALNVLMAMNIISKE-KKEIKWIGL 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,856,588
Number of Sequences: 62578
Number of extensions: 383065
Number of successful extensions: 649
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 7
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)