Query 017095
Match_columns 377
No_of_seqs 209 out of 472
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_B Transcription factor E2 100.0 2.7E-37 9.1E-42 259.8 10.6 102 144-252 4-105 (106)
2 1cf7_A Protein (transcription 100.0 2.2E-29 7.4E-34 200.6 6.0 74 64-137 1-75 (76)
3 1cf7_B Protein (transcription 99.3 8.4E-13 2.9E-17 109.4 4.1 67 70-139 7-92 (95)
4 2xvc_A ESCRT-III, SSO0910; cel 92.9 0.085 2.9E-06 40.2 3.6 44 80-124 13-56 (59)
5 1qgp_A Protein (double strande 92.3 0.11 3.8E-06 40.3 3.7 55 80-134 17-72 (77)
6 1oyi_A Double-stranded RNA-bin 91.9 0.16 5.6E-06 40.7 4.3 60 73-135 13-72 (82)
7 1qbj_A Protein (double-strande 91.7 0.16 5.5E-06 40.1 4.0 56 79-134 12-68 (81)
8 2heo_A Z-DNA binding protein 1 91.4 0.18 6E-06 37.9 3.9 53 78-131 11-63 (67)
9 1r7j_A Conserved hypothetical 89.9 0.62 2.1E-05 37.3 6.0 46 77-126 8-53 (95)
10 2oqg_A Possible transcriptiona 89.6 2 6.7E-05 33.6 8.7 46 81-129 25-70 (114)
11 3r0a_A Putative transcriptiona 88.7 0.59 2E-05 38.4 5.2 46 81-126 30-75 (123)
12 3deu_A Transcriptional regulat 87.9 1.6 5.5E-05 36.8 7.6 37 91-127 66-102 (166)
13 2htj_A P fimbrial regulatory p 87.4 0.57 1.9E-05 35.5 4.1 43 81-125 4-46 (81)
14 3jw4_A Transcriptional regulat 87.3 2 6.9E-05 34.8 7.6 45 82-126 46-90 (148)
15 3eco_A MEPR; mutlidrug efflux 86.9 1.5 5.1E-05 35.0 6.5 46 81-126 35-80 (139)
16 2y75_A HTH-type transcriptiona 84.0 1.1 3.8E-05 36.6 4.5 46 81-126 13-59 (129)
17 3qph_A TRMB, A global transcri 83.1 0.26 8.9E-06 47.8 0.3 51 82-135 24-74 (342)
18 1y0u_A Arsenical resistance op 82.6 0.93 3.2E-05 35.1 3.3 48 81-133 35-82 (96)
19 1ku9_A Hypothetical protein MJ 82.2 6.1 0.00021 31.3 8.1 45 81-126 30-74 (152)
20 3bro_A Transcriptional regulat 81.9 1.1 3.7E-05 35.7 3.6 46 82-127 39-84 (141)
21 2gxg_A 146AA long hypothetical 81.9 2.2 7.6E-05 34.1 5.4 36 91-126 48-83 (146)
22 2kko_A Possible transcriptiona 81.9 0.94 3.2E-05 36.2 3.2 45 82-129 30-74 (108)
23 1on2_A Transcriptional regulat 81.0 1.4 4.7E-05 36.0 3.9 37 92-128 21-57 (142)
24 3cuo_A Uncharacterized HTH-typ 80.7 1.3 4.6E-05 33.5 3.5 45 82-128 29-73 (99)
25 1sfx_A Conserved hypothetical 80.7 1 3.6E-05 34.1 2.9 45 81-127 24-68 (109)
26 2a61_A Transcriptional regulat 80.6 2.6 8.8E-05 33.7 5.4 36 91-126 45-80 (145)
27 2d1h_A ST1889, 109AA long hypo 79.8 0.92 3.2E-05 34.5 2.3 38 91-128 34-71 (109)
28 3nrv_A Putative transcriptiona 79.6 4.8 0.00016 32.4 6.7 43 82-126 45-87 (148)
29 1sfu_A 34L protein; protein/Z- 78.6 1.2 4.2E-05 35.3 2.7 59 74-134 12-70 (75)
30 3f6o_A Probable transcriptiona 78.6 2.6 9E-05 33.9 4.8 46 81-129 22-67 (118)
31 3rkx_A Biotin-[acetyl-COA-carb 77.8 2 6.9E-05 41.3 4.5 56 80-135 6-62 (323)
32 2frh_A SARA, staphylococcal ac 77.6 1.8 6.3E-05 35.0 3.6 45 82-126 42-86 (127)
33 2fu4_A Ferric uptake regulatio 76.5 1.4 4.8E-05 33.1 2.5 47 81-127 21-72 (83)
34 2pg4_A Uncharacterized protein 75.4 2 7E-05 33.0 3.2 52 72-124 8-62 (95)
35 1j5y_A Transcriptional regulat 74.8 2.9 9.8E-05 36.6 4.3 53 80-134 24-77 (187)
36 3bpv_A Transcriptional regulat 74.7 5.7 0.00019 31.3 5.8 43 82-126 34-76 (138)
37 1lj9_A Transcriptional regulat 74.7 7 0.00024 31.1 6.3 43 82-126 34-76 (144)
38 3bj6_A Transcriptional regulat 74.2 6 0.00021 31.8 5.9 35 92-126 53-87 (152)
39 2hr3_A Probable transcriptiona 73.8 3.8 0.00013 32.8 4.5 44 82-126 40-83 (147)
40 1r1u_A CZRA, repressor protein 73.6 2.1 7.1E-05 33.8 2.9 45 81-128 30-74 (106)
41 2hzt_A Putative HTH-type trans 73.3 2.6 8.8E-05 33.5 3.4 37 91-127 25-62 (107)
42 3s2w_A Transcriptional regulat 72.9 17 0.00058 29.7 8.5 36 92-127 63-98 (159)
43 3jth_A Transcription activator 72.5 2.5 8.6E-05 32.5 3.0 37 92-128 35-71 (98)
44 2dk5_A DNA-directed RNA polyme 72.4 3.7 0.00012 32.8 4.0 47 80-126 23-69 (91)
45 3mq0_A Transcriptional repress 72.4 3.6 0.00012 38.2 4.6 57 74-131 25-83 (275)
46 3mkl_A HTH-type transcriptiona 72.3 3.5 0.00012 33.0 4.0 39 78-116 8-46 (120)
47 2bv6_A MGRA, HTH-type transcri 72.3 0.98 3.3E-05 36.3 0.7 37 91-127 49-85 (142)
48 2cfx_A HTH-type transcriptiona 72.1 2.8 9.6E-05 34.8 3.4 47 78-126 6-52 (144)
49 4b8x_A SCO5413, possible MARR- 71.6 2 7E-05 35.6 2.5 45 83-127 41-85 (147)
50 3oou_A LIN2118 protein; protei 71.1 3.4 0.00012 32.4 3.6 43 78-120 6-48 (108)
51 1s3j_A YUSO protein; structura 71.1 3.2 0.00011 33.6 3.5 36 92-127 50-85 (155)
52 3pqk_A Biofilm growth-associat 71.0 3.6 0.00012 31.9 3.7 45 82-129 28-72 (102)
53 2eth_A Transcriptional regulat 70.8 3.5 0.00012 33.7 3.8 34 93-126 58-91 (154)
54 3oio_A Transcriptional regulat 70.6 4.2 0.00014 32.1 4.0 43 77-119 7-49 (113)
55 3u2r_A Regulatory protein MARR 70.5 2.6 9E-05 35.1 2.9 45 83-127 52-96 (168)
56 1a93_B MAX protein, coiled coi 70.3 5.2 0.00018 27.4 3.8 29 144-172 5-33 (34)
57 2jt1_A PEFI protein; solution 70.3 3 0.0001 32.6 3.0 47 80-126 7-57 (77)
58 2p4w_A Transcriptional regulat 69.6 28 0.00095 31.1 9.7 44 81-127 19-62 (202)
59 2x4h_A Hypothetical protein SS 69.5 3.9 0.00013 33.0 3.7 38 90-127 28-65 (139)
60 3nqo_A MARR-family transcripti 69.4 3 0.0001 36.0 3.1 45 82-126 46-90 (189)
61 3tgn_A ADC operon repressor AD 69.3 7.3 0.00025 31.1 5.2 44 81-127 42-85 (146)
62 2lkp_A Transcriptional regulat 69.1 3.6 0.00012 32.7 3.4 36 92-127 44-79 (119)
63 1i1g_A Transcriptional regulat 69.1 4 0.00014 33.2 3.7 45 80-126 7-51 (141)
64 3f6v_A Possible transcriptiona 68.3 4.8 0.00016 34.5 4.2 50 81-133 62-111 (151)
65 3pfi_A Holliday junction ATP-d 68.1 3.6 0.00012 37.8 3.6 55 75-129 261-316 (338)
66 2cg4_A Regulatory protein ASNC 68.1 3.6 0.00012 34.2 3.3 49 76-126 7-55 (152)
67 3g3z_A NMB1585, transcriptiona 68.1 3.2 0.00011 33.4 2.9 34 93-126 45-78 (145)
68 2f2e_A PA1607; transcription f 67.9 1.8 6.3E-05 36.5 1.4 57 68-127 11-71 (146)
69 3k0l_A Repressor protein; heli 67.6 3.7 0.00013 33.9 3.2 37 91-127 58-94 (162)
70 1tbx_A ORF F-93, hypothetical 67.5 4 0.00014 31.3 3.2 37 91-127 20-60 (99)
71 3mn2_A Probable ARAC family tr 67.4 4.6 0.00016 31.6 3.6 42 78-119 3-44 (108)
72 2dbb_A Putative HTH-type trans 67.2 3.7 0.00013 34.0 3.2 50 75-126 7-56 (151)
73 3fm5_A Transcriptional regulat 67.2 3.4 0.00012 33.6 2.9 35 92-126 53-87 (150)
74 1u2w_A CADC repressor, cadmium 67.2 3.8 0.00013 33.3 3.1 44 82-127 47-90 (122)
75 3oop_A LIN2960 protein; protei 67.0 3.1 0.00011 33.4 2.6 35 92-126 50-84 (143)
76 3bdd_A Regulatory protein MARR 66.6 2.7 9.1E-05 33.4 2.1 36 92-127 44-79 (142)
77 2cyy_A Putative HTH-type trans 66.4 4.5 0.00015 33.7 3.6 50 75-126 5-54 (151)
78 3ech_A MEXR, multidrug resista 66.4 5.1 0.00017 32.2 3.7 43 82-126 42-84 (142)
79 3bja_A Transcriptional regulat 66.2 4.9 0.00017 31.7 3.6 43 82-126 38-80 (139)
80 2nnn_A Probable transcriptiona 66.1 3.5 0.00012 32.5 2.7 35 92-126 51-85 (140)
81 2xrn_A HTH-type transcriptiona 66.1 16 0.00056 32.9 7.5 49 82-131 11-60 (241)
82 1ub9_A Hypothetical protein PH 66.1 2.5 8.5E-05 31.9 1.8 44 82-127 21-64 (100)
83 2fa5_A Transcriptional regulat 66.1 4.3 0.00015 33.2 3.3 37 91-127 61-97 (162)
84 1z7u_A Hypothetical protein EF 66.1 4 0.00014 32.6 3.1 36 92-127 34-70 (112)
85 1ylf_A RRF2 family protein; st 65.9 5.6 0.00019 33.5 4.1 46 81-126 18-63 (149)
86 2fsw_A PG_0823 protein; alpha- 65.7 4.4 0.00015 32.0 3.2 58 67-127 11-73 (107)
87 2w25_A Probable transcriptiona 65.6 4.6 0.00016 33.5 3.4 50 75-126 5-54 (150)
88 2fbi_A Probable transcriptiona 64.9 3.7 0.00013 32.5 2.6 36 92-127 49-84 (142)
89 2p5v_A Transcriptional regulat 64.9 4.5 0.00015 34.1 3.3 50 75-126 8-57 (162)
90 1xn7_A Hypothetical protein YH 64.2 5.4 0.00019 31.1 3.4 45 80-126 5-49 (78)
91 4ham_A LMO2241 protein; struct 64.2 23 0.0008 29.1 7.5 51 78-128 19-73 (134)
92 3f3x_A Transcriptional regulat 64.1 4.1 0.00014 32.7 2.8 43 82-127 42-84 (144)
93 3gpv_A Transcriptional regulat 64.0 11 0.00038 32.1 5.6 91 82-181 2-123 (148)
94 2fbh_A Transcriptional regulat 63.8 4.6 0.00016 32.1 3.0 38 90-127 49-86 (146)
95 3boq_A Transcriptional regulat 63.6 5.7 0.00019 32.3 3.6 36 91-126 60-95 (160)
96 3k69_A Putative transcription 63.5 6.7 0.00023 34.0 4.2 46 81-126 16-61 (162)
97 1p6r_A Penicillinase repressor 63.4 4.9 0.00017 30.1 2.9 46 80-127 12-61 (82)
98 2qww_A Transcriptional regulat 63.4 5.1 0.00018 32.4 3.3 42 82-125 46-87 (154)
99 1mkm_A ICLR transcriptional re 63.1 6.6 0.00023 35.5 4.3 45 81-126 12-56 (249)
100 3lsg_A Two-component response 62.8 6.7 0.00023 30.3 3.7 42 78-119 3-45 (103)
101 3cdh_A Transcriptional regulat 62.8 4.5 0.00015 32.9 2.8 37 90-126 54-90 (155)
102 2ip2_A Probable phenazine-spec 62.8 4.2 0.00014 37.5 2.9 43 92-134 40-82 (334)
103 1yyv_A Putative transcriptiona 62.5 3 0.0001 34.8 1.7 60 68-127 22-83 (131)
104 2jsc_A Transcriptional regulat 62.5 3.5 0.00012 33.3 2.1 44 81-127 25-68 (118)
105 2pn6_A ST1022, 150AA long hypo 62.5 5.6 0.00019 32.8 3.4 45 80-126 6-50 (150)
106 1bl0_A Protein (multiple antib 62.5 5.4 0.00018 32.4 3.2 42 77-118 11-52 (129)
107 2k02_A Ferrous iron transport 62.1 6.1 0.00021 31.7 3.4 46 80-127 5-50 (87)
108 3ihu_A Transcriptional regulat 62.0 9.8 0.00034 33.5 5.1 56 73-128 15-74 (222)
109 3hsr_A HTH-type transcriptiona 61.5 4.2 0.00014 32.7 2.4 37 90-126 47-83 (140)
110 4hbl_A Transcriptional regulat 61.4 5.6 0.00019 32.4 3.2 35 92-126 54-88 (149)
111 1v4r_A Transcriptional repress 61.0 14 0.00047 28.8 5.3 54 76-129 14-71 (102)
112 2wte_A CSA3; antiviral protein 60.6 7 0.00024 36.2 4.0 49 78-128 153-201 (244)
113 2k9s_A Arabinose operon regula 60.6 9 0.00031 29.9 4.1 40 78-117 4-44 (107)
114 3i53_A O-methyltransferase; CO 60.2 4 0.00014 37.8 2.3 50 82-134 30-79 (332)
115 2fbk_A Transcriptional regulat 59.6 7.1 0.00024 33.0 3.6 36 92-127 85-120 (181)
116 2h09_A Transcriptional regulat 59.2 9.2 0.00031 31.5 4.2 37 92-128 53-89 (155)
117 2nyx_A Probable transcriptiona 59.0 6.6 0.00023 32.8 3.2 35 92-126 58-92 (168)
118 2o0y_A Transcriptional regulat 58.5 7.5 0.00025 35.6 3.8 41 91-131 36-76 (260)
119 1r1t_A Transcriptional repress 57.7 6.7 0.00023 32.1 3.0 36 92-127 58-93 (122)
120 2ia0_A Putative HTH-type trans 57.5 7.4 0.00025 33.6 3.4 50 75-126 15-64 (171)
121 3by6_A Predicted transcription 57.3 12 0.0004 30.9 4.4 52 78-129 16-71 (126)
122 3r4k_A Transcriptional regulat 57.2 4.1 0.00014 37.4 1.8 42 91-132 19-61 (260)
123 4a5n_A Uncharacterized HTH-typ 57.0 7.8 0.00027 32.7 3.4 59 68-127 13-74 (131)
124 2e1c_A Putative HTH-type trans 57.0 8.4 0.00029 33.3 3.7 51 74-126 24-74 (171)
125 2r3s_A Uncharacterized protein 56.8 5 0.00017 36.7 2.3 42 91-133 37-78 (335)
126 3lst_A CALO1 methyltransferase 56.6 5.3 0.00018 37.5 2.5 44 90-134 52-95 (348)
127 2g7u_A Transcriptional regulat 56.4 5.4 0.00019 36.4 2.5 40 91-131 27-66 (257)
128 2vn2_A DNAD, chromosome replic 56.4 7.5 0.00026 32.1 3.1 36 93-128 51-86 (128)
129 2qlz_A Transcription factor PF 56.0 20 0.00068 33.1 6.2 42 81-125 16-57 (232)
130 2rdp_A Putative transcriptiona 55.9 6.6 0.00022 31.5 2.6 35 92-126 55-89 (150)
131 3gwz_A MMCR; methyltransferase 55.3 5.3 0.00018 38.0 2.3 44 90-133 68-112 (369)
132 3he5_B Synzip2; heterodimeric 55.1 31 0.0011 25.0 5.7 37 145-181 9-45 (52)
133 3hh0_A Transcriptional regulat 54.8 19 0.00064 30.7 5.5 35 93-133 4-42 (146)
134 4fx0_A Probable transcriptiona 54.7 11 0.00037 31.3 3.9 36 91-126 50-85 (148)
135 2pex_A Transcriptional regulat 54.7 4.4 0.00015 32.9 1.4 37 91-127 59-95 (153)
136 1fxk_C Protein (prefoldin); ar 54.4 23 0.00079 29.2 5.9 51 130-180 72-129 (133)
137 1qzz_A RDMB, aclacinomycin-10- 53.6 6.3 0.00021 36.8 2.5 43 91-133 47-91 (374)
138 3e6m_A MARR family transcripti 53.5 7.2 0.00025 32.1 2.6 36 92-127 66-101 (161)
139 1wi9_A Protein C20ORF116 homol 53.0 14 0.00048 29.1 4.0 55 78-134 8-64 (72)
140 3cjn_A Transcriptional regulat 52.9 4.9 0.00017 32.9 1.4 36 91-126 64-99 (162)
141 1jgs_A Multiple antibiotic res 52.7 4.3 0.00015 32.1 1.0 35 92-126 47-81 (138)
142 3tqn_A Transcriptional regulat 52.7 15 0.00052 29.5 4.3 52 78-129 14-69 (113)
143 3df8_A Possible HXLR family tr 51.9 9.8 0.00034 30.5 3.1 54 72-128 18-78 (111)
144 2ek5_A Predicted transcription 51.3 11 0.00037 31.4 3.3 50 80-129 11-64 (129)
145 2qko_A Possible transcriptiona 51.3 11 0.00038 31.5 3.4 42 71-112 26-67 (215)
146 3kp7_A Transcriptional regulat 51.1 7.8 0.00027 31.4 2.4 37 90-126 48-84 (151)
147 3dcf_A Transcriptional regulat 50.5 11 0.00039 30.9 3.3 41 71-111 29-69 (218)
148 3neu_A LIN1836 protein; struct 50.4 26 0.00088 28.6 5.5 52 78-129 18-73 (125)
149 3t8r_A Staphylococcus aureus C 50.3 16 0.00054 30.8 4.2 47 80-126 14-61 (143)
150 3m91_A Proteasome-associated A 49.7 42 0.0015 24.6 5.9 38 145-182 8-45 (51)
151 1q1h_A TFE, transcription fact 49.6 6.9 0.00024 30.7 1.8 37 90-126 30-66 (110)
152 1xmk_A Double-stranded RNA-spe 49.2 19 0.00066 28.2 4.3 56 77-134 11-67 (79)
153 1z91_A Organic hydroperoxide r 49.0 4.1 0.00014 32.6 0.3 36 92-127 53-88 (147)
154 1hsj_A Fusion protein consisti 49.0 9.8 0.00033 36.9 3.1 45 82-126 409-453 (487)
155 3sxy_A Transcriptional regulat 48.9 17 0.00057 31.9 4.3 41 89-129 31-71 (218)
156 1tw3_A COMT, carminomycin 4-O- 48.8 9.4 0.00032 35.5 2.8 44 91-134 50-93 (360)
157 3i4p_A Transcriptional regulat 48.5 13 0.00045 31.5 3.4 46 79-126 5-50 (162)
158 3b73_A PHIH1 repressor-like pr 48.2 13 0.00044 30.7 3.2 53 75-129 11-65 (111)
159 2v79_A DNA replication protein 48.0 10 0.00035 32.1 2.7 39 88-126 46-84 (135)
160 1x19_A CRTF-related protein; m 47.7 10 0.00036 35.4 3.0 43 91-134 62-104 (359)
161 1okr_A MECI, methicillin resis 47.4 11 0.00036 29.7 2.6 45 81-127 14-62 (123)
162 2ia2_A Putative transcriptiona 47.2 16 0.00055 33.4 4.1 41 91-132 34-74 (265)
163 2id3_A Putative transcriptiona 46.8 5.5 0.00019 34.1 0.8 42 71-112 38-79 (225)
164 4aik_A Transcriptional regulat 46.7 58 0.002 26.9 7.2 41 86-127 40-80 (151)
165 1bia_A BIRA bifunctional prote 46.4 14 0.00046 35.1 3.6 53 80-134 8-61 (321)
166 4dzo_A Mitotic spindle assembl 45.6 62 0.0021 27.3 7.2 36 146-181 4-39 (123)
167 1z4h_A TORI, TOR inhibition pr 45.6 9.9 0.00034 27.9 2.0 26 90-115 7-32 (66)
168 2b0l_A GTP-sensing transcripti 45.3 8.7 0.0003 30.9 1.7 39 89-127 38-77 (102)
169 2yy0_A C-MYC-binding protein; 45.3 39 0.0013 24.7 5.1 33 145-177 18-50 (53)
170 3k2z_A LEXA repressor; winged 45.0 10 0.00036 33.0 2.3 38 90-127 21-58 (196)
171 3dp7_A SAM-dependent methyltra 44.9 12 0.0004 35.5 2.8 40 91-131 48-87 (363)
172 1p4x_A Staphylococcal accessor 43.1 15 0.00051 33.9 3.2 44 83-126 164-207 (250)
173 2wt7_A Proto-oncogene protein 42.7 56 0.0019 24.2 5.8 34 147-180 24-57 (63)
174 2qvo_A Uncharacterized protein 42.4 12 0.0004 28.8 2.0 35 90-124 27-61 (95)
175 3gbg_A TCP pilus virulence reg 42.1 21 0.00072 31.8 3.9 38 78-115 170-207 (276)
176 3c7j_A Transcriptional regulat 41.3 17 0.00059 32.7 3.2 51 78-128 31-84 (237)
177 1uly_A Hypothetical protein PH 40.4 18 0.00063 32.0 3.3 44 80-126 23-66 (192)
178 2esh_A Conserved hypothetical 39.7 90 0.0031 24.9 7.1 44 83-126 19-68 (118)
179 2zqm_A Prefoldin beta subunit 39.3 82 0.0028 25.0 6.7 75 102-180 31-111 (117)
180 2kfs_A Conserved hypothetical 39.2 13 0.00044 32.8 2.0 26 90-115 28-53 (148)
181 2xdj_A Uncharacterized protein 39.2 54 0.0019 26.0 5.5 38 145-182 26-63 (83)
182 3lwf_A LIN1550 protein, putati 39.1 26 0.00089 30.3 3.9 46 81-126 31-77 (159)
183 3bvo_A CO-chaperone protein HS 38.9 70 0.0024 28.9 6.9 51 71-123 55-122 (207)
184 2qtq_A Transcriptional regulat 38.4 29 0.00098 28.3 3.9 43 70-112 13-55 (213)
185 1xd7_A YWNA; structural genomi 38.2 35 0.0012 28.4 4.5 48 77-126 9-56 (145)
186 1tc3_C Protein (TC3 transposas 38.1 25 0.00084 22.4 2.8 26 94-119 22-47 (51)
187 2rae_A Transcriptional regulat 37.9 30 0.001 28.4 4.0 44 69-112 13-56 (207)
188 1fp2_A Isoflavone O-methyltran 37.4 16 0.00055 34.1 2.5 50 83-133 42-96 (352)
189 3fiw_A Putative TETR-family tr 37.4 23 0.00078 30.6 3.3 45 68-112 20-64 (211)
190 3qqa_A CMER; alpha-helical, he 37.1 9.8 0.00034 31.4 0.9 45 67-111 13-57 (216)
191 1hw1_A FADR, fatty acid metabo 36.4 18 0.00062 31.8 2.5 48 80-127 14-65 (239)
192 3ic7_A Putative transcriptiona 36.3 13 0.00046 30.5 1.6 52 78-129 16-71 (126)
193 2jn6_A Protein CGL2762, transp 35.9 10 0.00035 29.1 0.8 30 93-122 23-52 (97)
194 3hrs_A Metalloregulator SCAR; 35.8 26 0.0009 31.1 3.5 40 89-128 16-55 (214)
195 2zdi_C Prefoldin subunit alpha 35.1 81 0.0028 26.7 6.4 100 81-180 13-139 (151)
196 1t2k_D Cyclic-AMP-dependent tr 34.9 89 0.0031 22.8 5.8 34 147-180 23-56 (61)
197 1fp1_D Isoliquiritigenin 2'-O- 34.8 18 0.00061 34.1 2.4 34 93-126 62-101 (372)
198 2hs5_A Putative transcriptiona 34.8 24 0.00083 31.6 3.1 41 89-129 47-87 (239)
199 1d5y_A ROB transcription facto 34.8 22 0.00074 31.9 2.8 40 78-117 4-43 (292)
200 1r8e_A Multidrug-efflux transp 34.7 1.5E+02 0.0053 26.4 8.5 89 91-184 3-117 (278)
201 3bru_A Regulatory protein, TET 34.7 33 0.0011 28.4 3.7 43 70-112 27-69 (222)
202 3mcz_A O-methyltransferase; ad 34.3 22 0.00076 32.8 2.9 39 93-132 56-94 (352)
203 3viq_B Mating-type switching p 34.3 22 0.00076 28.7 2.5 31 148-178 3-33 (85)
204 2g9w_A Conserved hypothetical 34.2 28 0.00094 28.5 3.2 46 81-127 13-62 (138)
205 1zg3_A Isoflavanone 4'-O-methy 34.2 18 0.00062 33.8 2.3 44 82-126 35-81 (358)
206 1g2h_A Transcriptional regulat 34.0 53 0.0018 23.7 4.3 38 74-115 17-55 (61)
207 2k4b_A Transcriptional regulat 33.5 22 0.00074 28.6 2.3 45 81-127 39-87 (99)
208 1fxk_A Prefoldin; archaeal pro 33.4 1E+02 0.0034 24.1 6.3 73 102-179 26-98 (107)
209 1q06_A Transcriptional regulat 33.3 72 0.0025 26.5 5.7 81 94-181 1-100 (135)
210 2di3_A Bacterial regulatory pr 33.3 22 0.00074 31.6 2.5 37 89-125 23-60 (239)
211 1mzb_A Ferric uptake regulatio 33.1 31 0.0011 28.5 3.3 47 81-127 22-73 (136)
212 2dg7_A Putative transcriptiona 32.8 41 0.0014 27.4 4.0 39 74-112 8-46 (195)
213 1j9i_A GPNU1 DBD;, terminase s 32.7 20 0.00069 26.1 1.9 40 93-135 2-43 (68)
214 1umq_A Photosynthetic apparatu 32.6 72 0.0024 24.9 5.2 40 73-115 36-76 (81)
215 2o03_A Probable zinc uptake re 32.4 35 0.0012 27.9 3.5 46 82-128 16-66 (131)
216 3ppb_A Putative TETR family tr 32.3 41 0.0014 26.8 3.9 40 72-111 8-47 (195)
217 1ci6_A Transcription factor AT 32.0 1E+02 0.0036 22.9 5.8 32 148-179 25-56 (63)
218 3kz9_A SMCR; transcriptional r 31.6 42 0.0014 27.0 3.8 39 74-112 18-56 (206)
219 2zqm_A Prefoldin beta subunit 31.3 85 0.0029 24.8 5.6 34 148-181 72-105 (117)
220 1y6u_A XIS, excisionase from t 31.3 22 0.00074 27.1 1.9 40 90-137 13-52 (70)
221 1m1j_C Fibrinogen gamma chain; 31.2 25 0.00085 35.4 2.8 13 148-160 86-98 (409)
222 3qkx_A Uncharacterized HTH-typ 30.4 32 0.0011 27.4 2.9 38 74-111 9-46 (188)
223 2pjp_A Selenocysteine-specific 30.3 43 0.0015 27.1 3.6 54 76-131 65-118 (121)
224 3uo3_A J-type CO-chaperone JAC 30.3 2.8E+02 0.0096 24.3 10.1 109 67-182 24-147 (181)
225 1jko_C HIN recombinase, DNA-in 30.2 27 0.00094 22.7 2.1 22 94-115 22-43 (52)
226 4a6d_A Hydroxyindole O-methylt 30.1 29 0.00099 32.8 3.0 44 83-127 34-77 (353)
227 2fxa_A Protease production reg 30.0 13 0.00046 32.6 0.6 36 92-127 61-96 (207)
228 2hxi_A Putative transcriptiona 29.9 40 0.0014 29.8 3.7 43 69-111 25-67 (241)
229 3col_A Putative transcription 29.8 32 0.0011 27.6 2.8 42 70-111 7-48 (196)
230 1p4x_A Staphylococcal accessor 29.7 38 0.0013 31.1 3.6 44 83-126 40-83 (250)
231 1sgm_A Putative HTH-type trans 29.6 47 0.0016 26.5 3.8 38 75-112 8-45 (191)
232 2wv0_A YVOA, HTH-type transcri 29.4 51 0.0017 29.8 4.3 50 78-127 15-68 (243)
233 3p9c_A Caffeic acid O-methyltr 29.4 31 0.0011 32.7 3.1 45 82-126 45-94 (364)
234 1hqc_A RUVB; extended AAA-ATPa 29.3 45 0.0015 30.0 3.9 51 77-127 247-299 (324)
235 2obp_A Putative DNA-binding pr 29.3 28 0.00095 28.2 2.3 38 89-126 32-69 (96)
236 2iu5_A DHAS, YCEG, HTH-type dh 29.3 46 0.0016 27.2 3.8 37 75-111 15-51 (195)
237 1gmj_A ATPase inhibitor; coile 29.2 1.1E+02 0.0038 24.6 5.7 30 153-182 51-80 (84)
238 3on4_A Transcriptional regulat 29.2 49 0.0017 26.4 3.8 41 71-111 8-48 (191)
239 1jnm_A Proto-oncogene C-JUN; B 28.9 96 0.0033 22.8 5.0 33 147-179 23-55 (62)
240 2zb9_A Putative transcriptiona 28.9 21 0.00072 29.6 1.6 43 70-112 20-62 (214)
241 3q8t_A Beclin-1; autophagy, AT 28.8 95 0.0033 25.0 5.4 35 149-183 21-55 (96)
242 3edp_A LIN2111 protein; APC883 28.8 49 0.0017 29.8 4.1 51 78-128 14-68 (236)
243 1zk8_A Transcriptional regulat 28.5 41 0.0014 27.0 3.2 42 70-111 5-46 (183)
244 1lwu_C Fibrinogen gamma chain; 28.3 29 0.00099 33.9 2.6 101 143-248 2-104 (323)
245 3gp4_A Transcriptional regulat 28.3 82 0.0028 26.5 5.2 31 147-177 89-119 (142)
246 3e6c_C CPRK, cyclic nucleotide 28.2 44 0.0015 29.0 3.6 40 93-133 177-216 (250)
247 2yve_A Transcriptional regulat 28.2 44 0.0015 27.3 3.5 37 76-112 7-43 (185)
248 1fxk_A Prefoldin; archaeal pro 28.2 83 0.0029 24.6 4.9 37 143-179 69-105 (107)
249 4dzn_A Coiled-coil peptide CC- 28.0 1.2E+02 0.0039 20.2 4.6 26 148-173 4-29 (33)
250 2aze_A Transcription factor DP 28.0 1.7E+02 0.0058 26.0 7.3 20 206-225 65-84 (155)
251 1nkp_B MAX protein, MYC proto- 28.0 86 0.0029 24.0 4.9 33 147-179 48-80 (83)
252 3bni_A Putative TETR-family tr 27.8 26 0.00089 29.8 2.0 41 72-112 42-82 (229)
253 4etp_A Kinesin-like protein KA 27.6 65 0.0022 31.9 5.1 51 147-197 4-58 (403)
254 2iai_A Putative transcriptiona 27.5 46 0.0016 28.2 3.5 37 76-112 33-69 (230)
255 3kkc_A TETR family transcripti 27.4 21 0.00073 28.5 1.3 39 73-111 12-50 (177)
256 3dkw_A DNR protein; CRP-FNR, H 27.3 49 0.0017 27.8 3.6 39 93-132 178-216 (227)
257 3mnl_A KSTR, transcriptional r 27.2 10 0.00036 30.9 -0.6 44 69-112 16-59 (203)
258 2qc0_A Uncharacterized protein 27.0 34 0.0012 33.2 2.9 45 82-128 302-346 (373)
259 1ft9_A Carbon monoxide oxidati 27.0 60 0.002 27.5 4.2 36 94-129 164-199 (222)
260 1fxk_C Protein (prefoldin); ar 26.8 1E+02 0.0035 25.2 5.5 33 149-181 91-123 (133)
261 3he0_A Transcriptional regulat 26.7 51 0.0018 26.5 3.5 41 71-111 9-49 (196)
262 3u1d_A Uncharacterized protein 26.5 52 0.0018 28.8 3.7 47 82-128 34-81 (151)
263 3on2_A Probable transcriptiona 26.1 60 0.0021 25.9 3.8 39 73-111 12-50 (199)
264 3vp5_A Transcriptional regulat 26.0 54 0.0019 27.0 3.6 36 76-111 15-50 (189)
265 2j5u_A MREC protein; bacterial 25.5 60 0.002 30.2 4.2 46 145-191 25-71 (255)
266 1r8d_A Transcription activator 25.1 1.1E+02 0.0037 24.2 5.1 36 94-133 3-40 (109)
267 3dv8_A Transcriptional regulat 25.1 21 0.00071 30.0 0.9 39 93-132 169-207 (220)
268 2hxo_A Putative TETR-family tr 24.9 80 0.0027 27.7 4.7 43 70-112 13-55 (237)
269 2dg8_A Putative TETR-family tr 24.9 48 0.0017 27.1 3.1 38 74-111 10-47 (193)
270 2yko_A LINE-1 ORF1P; RNA-bindi 24.8 72 0.0025 30.0 4.5 42 141-182 8-49 (233)
271 3knw_A Putative transcriptiona 24.6 38 0.0013 27.7 2.3 43 70-112 11-53 (212)
272 3cta_A Riboflavin kinase; stru 24.5 25 0.00087 31.2 1.3 38 90-127 24-61 (230)
273 2yua_A Williams-beuren syndrom 24.3 1.5E+02 0.0053 23.0 5.9 43 71-113 27-81 (99)
274 3bwg_A Uncharacterized HTH-typ 24.3 70 0.0024 28.7 4.3 51 78-128 10-64 (239)
275 4aci_A HTH-type transcriptiona 24.1 24 0.00082 28.5 1.0 44 69-112 10-53 (191)
276 3ghg_A Fibrinogen alpha chain; 23.9 1.7E+02 0.0057 30.8 7.4 79 143-222 114-216 (562)
277 2v7f_A RPS19, RPS19E SSU ribos 23.9 53 0.0018 28.5 3.2 46 80-128 57-116 (150)
278 1sd4_A Penicillinase repressor 23.8 50 0.0017 25.8 2.9 45 81-127 14-62 (126)
279 3m9b_A Proteasome-associated A 23.8 68 0.0023 30.5 4.2 38 145-182 53-90 (251)
280 2qlz_A Transcription factor PF 23.6 44 0.0015 30.7 2.8 43 91-133 176-218 (232)
281 4ev0_A Transcription regulator 23.5 62 0.0021 26.9 3.5 38 93-131 163-200 (216)
282 2p5k_A Arginine repressor; DNA 23.3 66 0.0022 22.3 3.1 37 84-126 12-53 (64)
283 3ke2_A Uncharacterized protein 23.2 59 0.002 27.7 3.3 33 92-124 32-64 (117)
284 3him_A Probable transcriptiona 23.0 51 0.0017 26.6 2.8 41 71-111 14-54 (211)
285 1fx7_A Iron-dependent represso 23.0 60 0.0021 28.8 3.5 34 94-127 25-58 (230)
286 3bqz_B HTH-type transcriptiona 23.0 55 0.0019 26.3 3.0 36 77-112 6-41 (194)
287 3hho_A CO-chaperone protein HS 22.9 2.1E+02 0.0072 24.8 7.0 96 75-182 20-142 (174)
288 3aqt_A Bacterial regulatory pr 22.9 31 0.0011 29.8 1.6 43 70-112 43-85 (245)
289 2np3_A Putative TETR-family re 22.8 18 0.00061 30.1 0.0 37 75-111 32-68 (212)
290 3nmd_A CGMP dependent protein 22.8 1.6E+02 0.0054 23.1 5.4 8 148-155 21-28 (72)
291 2hku_A A putative transcriptio 22.8 55 0.0019 27.1 3.1 41 70-111 17-57 (215)
292 3ra3_A P1C; coiled coil domain 22.8 60 0.002 20.9 2.4 23 157-179 4-26 (28)
293 3lwj_A Putative TETR-family tr 22.7 38 0.0013 27.5 2.0 42 71-112 10-51 (202)
294 3cwr_A Transcriptional regulat 22.6 41 0.0014 27.2 2.2 41 72-112 16-56 (208)
295 2dgc_A Protein (GCN4); basic d 22.6 1E+02 0.0035 23.0 4.2 30 147-176 31-60 (63)
296 3l7w_A Putative uncharacterize 22.5 66 0.0022 25.4 3.3 45 82-126 14-59 (108)
297 3egq_A TETR family transcripti 22.4 56 0.0019 25.9 2.9 36 77-112 8-43 (170)
298 3f8m_A GNTR-family protein tra 22.3 44 0.0015 30.4 2.5 42 88-129 30-72 (248)
299 2zcx_A SCO7815, TETR-family tr 22.2 46 0.0016 28.7 2.6 40 73-112 23-62 (231)
300 2fe3_A Peroxide operon regulat 22.1 69 0.0024 26.6 3.5 47 81-128 26-77 (145)
301 2fmy_A COOA, carbon monoxide o 21.9 55 0.0019 27.6 2.9 40 93-133 167-207 (220)
302 3ccy_A Putative TETR-family tr 21.5 1E+02 0.0036 25.1 4.5 41 72-112 13-53 (203)
303 2opt_A Actii protein; helical 21.4 68 0.0023 28.4 3.5 43 70-112 3-45 (234)
304 2fq4_A Transcriptional regulat 21.3 50 0.0017 27.0 2.5 36 76-111 15-50 (192)
305 2g7s_A Transcriptional regulat 21.1 54 0.0019 26.1 2.6 37 76-112 11-47 (194)
306 1ci6_A Transcription factor AT 21.1 1.5E+02 0.005 22.0 4.8 31 146-176 30-60 (63)
307 3f1b_A TETR-like transcription 21.0 48 0.0017 26.7 2.3 37 76-112 17-53 (203)
308 3u06_A Protein claret segregat 20.7 1.1E+02 0.0038 30.4 5.2 33 149-181 6-38 (412)
309 3q0w_A HTH-type transcriptiona 20.5 53 0.0018 27.9 2.5 42 71-112 42-83 (236)
310 1zx4_A P1 PARB, plasmid partit 20.4 3.5E+02 0.012 24.3 8.1 97 71-182 6-103 (192)
311 3nrg_A TETR family transcripti 20.4 72 0.0025 26.0 3.3 41 72-112 12-52 (217)
312 2qib_A TETR-family transcripti 20.3 49 0.0017 28.1 2.3 37 75-111 15-51 (231)
313 2gqq_A Leucine-responsive regu 20.3 11 0.00036 32.0 -2.0 49 75-125 11-59 (163)
314 3gzi_A Transcriptional regulat 20.3 64 0.0022 26.4 2.9 39 74-112 18-56 (218)
315 1fzc_C Fibrin; blood coagulati 20.0 4.7E+02 0.016 25.3 9.4 54 190-247 63-117 (319)
No 1
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=100.00 E-value=2.7e-37 Score=259.83 Aligned_cols=102 Identities=29% Similarity=0.470 Sum_probs=97.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccHHHHhhccCCCCceEEEEeCCCCceEEecCC
Q 017095 144 VDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDP 223 (377)
Q Consensus 144 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~~n~~~aYVT~~DI~~l~~f~~qTvIAIKAP~gT~LEVPdP 223 (377)
+..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|+||+++||||||||+||+||||+|
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp 83 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS 83 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCcEEEEEecCCCceEEEEecC
Q 017095 224 DEAVDYPQRRYRIILRSTMGPIDVYLVSR 252 (377)
Q Consensus 224 ~e~~~~~~~~yqI~LkS~~GPIdVyL~~~ 252 (377)
++ +|||||||++||||||||++
T Consensus 84 ~~-------~yqi~LkS~~GPIdV~L~~~ 105 (106)
T 2aze_B 84 SE-------NFQISLKSKQGPIDVFLCPE 105 (106)
T ss_dssp SS-------CEEEEEECSSSCCEEECCTT
T ss_pred Cc-------ceEEEEECCCCCEEEEEeCC
Confidence 84 69999999999999999986
No 2
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.95 E-value=2.2e-29 Score=200.59 Aligned_cols=74 Identities=66% Similarity=1.037 Sum_probs=65.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhcc-ceehhhhhHHHhhhccchhhccCCeEEEeccC
Q 017095 64 TPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGLD 137 (377)
Q Consensus 64 tp~~~~R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~ 137 (377)
+|.+.+|+++||++||++||++|++++++.++|++||++|+| +|||||||+|||||||||+|.+||.|+|+|.+
T Consensus 1 ~~~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 1 PPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp -----CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CCCCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 367899999999999999999999999999999999999999 99999999999999999999999999999975
No 3
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.31 E-value=8.4e-13 Score=109.36 Aligned_cols=67 Identities=30% Similarity=0.540 Sum_probs=47.9
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHh-------------------ccceehhhhhHHHhhhccchhhccCCe
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL-------------------EVQKRRIYDITNVLEGIGLIEKKLKNR 130 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L-------------------~VqKRRIYDItNVLEgIGLIeK~sKN~ 130 (377)
+..+.|..++.+..+.++. .+....+++|++| ..+||||||++|||+++|||+| .|+.
T Consensus 7 k~~~GLr~fS~kVcekVk~--k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K-~k~~ 83 (95)
T 1cf7_B 7 KNGKGLRHFSMKVCEKVQR--KGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISK-EKKE 83 (95)
T ss_dssp --CCHHHHHHHHHHHHHHH--HSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCC-CSSC
T ss_pred ccCccHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceec-CCCE
Confidence 3345566666666666544 3344566666555 4599999999999999999999 7999
Q ss_pred EEEeccCCC
Q 017095 131 IRWKGLDNS 139 (377)
Q Consensus 131 i~W~G~~~s 139 (377)
|+|+|++.+
T Consensus 84 i~W~g~~~~ 92 (95)
T 1cf7_B 84 IKWIGLPTN 92 (95)
T ss_dssp EEBCCCC--
T ss_pred EEEecCCcc
Confidence 999998754
No 4
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=92.87 E-value=0.085 Score=40.21 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchh
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIE 124 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 124 (377)
.+.++++++ .+|.+|+..+|.+++|.|--+||+.+=||.=|||.
T Consensus 13 ~~lL~yIr~-sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVN-NGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHH-TTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH-cCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 467788876 59999999999999999999999999999999985
No 5
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.27 E-value=0.11 Score=40.26 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=47.0
Q ss_pred HHHHHHHhhCC-CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEe
Q 017095 80 KKFINLIKHAE-DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (377)
Q Consensus 80 kkFi~ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (377)
++.+.+|.+.+ +..+...++|++|+|.|+.+.-.+.-||.-|+|.+...+.=.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 67778776655 66899999999999999999999999999999999866556664
No 6
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=91.90 E-value=0.16 Score=40.69 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEec
Q 017095 73 SSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 135 (377)
Q Consensus 73 ~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G 135 (377)
-.-..+.++.+.+|+. ++ +...++|++||+.|.-++=.++-||.=|+|.+...+--+|.=
T Consensus 13 ~~~~~~~~~IL~lL~~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~ 72 (82)
T 1oyi_A 13 RSNAEIVCEAIKTIGI--EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFM 72 (82)
T ss_dssp CCSHHHHHHHHHHHSS--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEES
T ss_pred cchHHHHHHHHHHHHH--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCccee
Confidence 3556777899999984 44 999999999999999999999999999999999999999974
No 7
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.68 E-value=0.16 Score=40.13 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=47.2
Q ss_pred HHHHHHHHhhC-CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEe
Q 017095 79 TKKFINLIKHA-EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (377)
Q Consensus 79 TkkFi~ll~~a-p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (377)
-++.+.+|.+. |+..+...++|++|+|.|+-+.-.+.-||.-|+|.+...+.=.|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~ 68 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 68 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeE
Confidence 46677777654 466899999999999999999999999999999998766666775
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.41 E-value=0.18 Score=37.86 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeE
Q 017095 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (377)
Q Consensus 78 LTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (377)
.-.+.+++|.. .+..+.+.++|+.|++.|--++-+++.|+.-|+|....+..|
T Consensus 11 ~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y 63 (67)
T 2heo_A 11 LEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYW 63 (67)
T ss_dssp HHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceE
Confidence 34567888865 345699999999999999999999999999999987544443
No 9
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=89.89 E-value=0.62 Score=37.27 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 77 lLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+....+..+. .+ +....+|..+++..|++-.+++.|+.-|||++.
T Consensus 8 eIi~~IL~~i~---~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 8 EIIQAILEACK---SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHHHHT---TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34455555554 34 889999999999999999999999999999998
No 10
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=89.60 E-value=2 Score=33.62 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
+.+.++. .+.+.+.++|+.|++.+--++-.++.|+.-|+|++....
T Consensus 25 ~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~g 70 (114)
T 2oqg_A 25 EILTELG---RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVG 70 (114)
T ss_dssp HHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecC
Confidence 3455553 245899999999999999999999999999999876433
No 11
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=88.67 E-value=0.59 Score=38.43 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=38.8
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+..+...++.-+...++|+.|++.|-.+|-.++.|+..|+|.|.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4556665554433999999999999999999999999999999986
No 12
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=87.93 E-value=1.6 Score=36.76 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
++.+.+.++|+.|++.+-.+.-+++-||.-|+|+|..
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 3458999999999999999999999999999999873
No 13
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.43 E-value=0.57 Score=35.52 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhh
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (377)
+.+.++... +.+...++|+.|+|.+.-++-.++.|+.-|+|++
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 456666553 4589999999999999999999999999999984
No 14
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=87.32 E-value=2 Score=34.84 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=33.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.++...+++.+...++|+.|++.+=.+.-+++-||.-|+|+|.
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 444455556678999999999999999999999999999999988
No 15
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=86.94 E-value=1.5 Score=35.04 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
..+.++...+++.+.+.++|+.+++.+-.+.-+++-||.-|+|+|.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3455566677678999999999999999999999999999999987
No 16
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=84.04 E-value=1.1 Score=36.58 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHhhC-CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 81 KFINLIKHA-EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 81 kFi~ll~~a-p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+.++... +++.+...++|++++|.++-++.|++.|+..|+|+..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 444455443 4678999999999999999999999999999999876
No 17
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=83.08 E-value=0.26 Score=47.85 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=41.6
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEec
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 135 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G 135 (377)
++.|+. .|.....++|+.+++.|.++|++++.|+.-|||++...+..+|.-
T Consensus 24 Y~~Ll~---~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~a 74 (342)
T 3qph_A 24 YWTLLV---YGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAA 74 (342)
T ss_dssp SHHHHH---HHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEE
T ss_pred HHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEE
Confidence 555654 345777889999999999999999999999999988666666663
No 18
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=82.62 E-value=0.93 Score=35.14 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEE
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (377)
+.+.++ .+.+.+.++|+.|++.+--++-.++.|+..|+|++.. ..|..
T Consensus 35 ~Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 35 KILRML----DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 344555 3558999999999999999999999999999999876 54444
No 19
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=82.21 E-value=6.1 Score=31.31 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=37.5
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+.++... ++.+.+.++|+.|++.|=.++-+++.|+.-|+|++.
T Consensus 30 ~il~~L~~~-~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLS-DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHC-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 345555323 356999999999999999999999999999999986
No 20
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=81.93 E-value=1.1 Score=35.73 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=39.6
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
++.++...+++.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 4555556665579999999999999999999999999999999873
No 21
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=81.91 E-value=2.2 Score=34.10 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 677999999999999999999999999999999986
No 22
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=81.87 E-value=0.94 Score=36.20 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
.+.++. .+.+.+.++|+.|++.+.-++-.++.|+..|+|++...+
T Consensus 30 IL~~L~---~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 74 (108)
T 2kko_A 30 ILDLLA---QGERAVEAIATATGMNLTTASANLQALKSGGLVEARREG 74 (108)
T ss_dssp HHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEET
T ss_pred HHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 444553 367899999999999999999999999999999876443
No 23
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=81.00 E-value=1.4 Score=35.98 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=34.1
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
+.+.+.++|+.|+|.+--+.-+++.||.-|+|++...
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 4589999999999999999999999999999998743
No 24
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=80.70 E-value=1.3 Score=33.52 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=37.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
.+.++. .++.+.+.++|+.|++.+--++-.++.|+..|+|++...
T Consensus 29 il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 29 ILCMLS--GSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 344443 355789999999999999999999999999999988743
No 25
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=80.67 E-value=1 Score=34.13 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=37.6
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+.++.. .+.+...++|+.|++.+--+|-+++.|+.-|+|++..
T Consensus 24 ~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34555544 3458999999999999999999999999999999863
No 26
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.56 E-value=2.6 Score=33.68 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 346899999999999999999999999999999987
No 27
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=79.77 E-value=0.92 Score=34.54 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
++.+...++|+.|++.+--+|-+++.|+.-|+|++...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 45689999999999999999999999999999998743
No 28
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=79.65 E-value=4.8 Score=32.36 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.++... +.+.+.++|+.|++.+=.+.-+++-||.-|+|++.
T Consensus 45 iL~~l~~~--~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 45 IISVLSSA--SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHS--SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHcC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 34444443 47899999999999999999999999999999987
No 29
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=78.62 E-value=1.2 Score=35.27 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEe
Q 017095 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (377)
Q Consensus 74 SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (377)
....+.+++|..|. +++.+..+.+|.+||+.|+-|==++.-|+.=|.+.+...+.-+|.
T Consensus 12 ~~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 12 EIFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp HHHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred HHHHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 44556666776542 455599999999999999999999999999999999999999995
No 30
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=78.62 E-value=2.6 Score=33.93 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=38.5
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
+.+.++. ++.+.+.++|+.|++.+--+.-.+++|+..|||++....
T Consensus 22 ~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 22 AVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp HHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC
Confidence 4555554 466899999999999999999999999999999876443
No 31
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=77.78 E-value=2 Score=41.31 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=48.1
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccc-hhhccCCeEEEec
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGL-IEKKLKNRIRWKG 135 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~sKN~i~W~G 135 (377)
++.+++|..+.+..+.-.++|++|+|+|+-|+--++.|+..|+ |+...+.-|+...
T Consensus 6 ~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~ 62 (323)
T 3rkx_A 6 QDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEE
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEec
Confidence 5788888877788999999999999999999999999999998 6655556788775
No 32
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=77.61 E-value=1.8 Score=34.97 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=39.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
++.++...+++.+...++|+.|++.+=-+.-+++-||.-|+|+|.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 444555555678999999999999999999999999999999986
No 33
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=76.53 E-value=1.4 Score=33.09 Aligned_cols=47 Identities=13% Similarity=0.386 Sum_probs=39.6
Q ss_pred HHHHHHhhCCCCcccHHHHHHHh-----ccceehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
..++++...+++.+.+.++++.| +|.+=-+|=.++.|+..|+|.+..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35566655443689999999999 999999999999999999999863
No 34
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=75.38 E-value=2 Score=33.03 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=40.7
Q ss_pred CCcHHHHHHHHHHH--HhhCCCCcccHHHHHHHhccceeh-hhhhHHHhhhccchh
Q 017095 72 DSSLGLLTKKFINL--IKHAEDGILDLNKAAETLEVQKRR-IYDITNVLEGIGLIE 124 (377)
Q Consensus 72 d~SLglLTkkFi~l--l~~ap~g~ldLn~aA~~L~VqKRR-IYDItNVLEgIGLIe 124 (377)
...++.+.+-|.-| +... ++.+.+.++|+.|++.+-- ++-+++.||.-|+|+
T Consensus 8 ~~~~g~~~~~l~~L~~l~~~-~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 8 RLQFGHLIRILPTLLEFEKK-GYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GSBHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 34557666655443 3332 2368999999999999999 999999999999999
No 35
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=74.79 E-value=2.9 Score=36.55 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccc-hhhccCCeEEEe
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGL-IEKKLKNRIRWK 134 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~sKN~i~W~ 134 (377)
.+.+.++++. ++.+...++|++|+|++|-||-=++.|+..|+ |.+. ..-|.+.
T Consensus 24 ~~Il~~L~~~-~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~ 77 (187)
T 1j5y_A 24 KSIVRILERS-KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-PRGYVLA 77 (187)
T ss_dssp HHHHHHHHHC-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-TTEEECC
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-CCEEEEC
Confidence 3456666653 34589999999999999999999999999999 8764 3344443
No 36
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=74.71 E-value=5.7 Score=31.33 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.++.. .+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 34 iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444444 366899999999999999999999999999999985
No 37
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=74.71 E-value=7 Score=31.13 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=36.4
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.++... +.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 34 iL~~l~~~--~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 34 YLVRVCEN--PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHC--cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 34444443 46899999999999999999999999999999986
No 38
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=74.23 E-value=6 Score=31.83 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=33.2
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+...++|+.|++.+--+.-+++-||.-|+|++.
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 46899999999999999999999999999999986
No 39
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.83 E-value=3.8 Score=32.85 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=37.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.++... .+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 40 iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 40 VLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 34444442 456899999999999999999999999999999987
No 40
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=73.63 E-value=2.1 Score=33.80 Aligned_cols=45 Identities=11% Similarity=0.289 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
+.+.++. ++.+.+.++|+.|++.+--++-.++.|+..|+|.+...
T Consensus 30 ~IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 30 RIMELLS---VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp HHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3445554 35589999999999999999999999999999987643
No 41
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=73.28 E-value=2.6 Score=33.48 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHh-ccceehhhhhHHHhhhccchhhcc
Q 017095 91 DGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 91 ~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.+...++|+.+ ++.+..++..++.||.-|||+|..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 5778999999999 999999999999999999999874
No 42
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=72.92 E-value=17 Score=29.65 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=33.7
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+...++|+.+++.+=-+.-+++-||.-|+|+|..
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 568999999999999999999999999999999873
No 43
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=72.52 E-value=2.5 Score=32.52 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=34.4
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
+.+...++|+.|++.+.-++--++.|+..|+|++...
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999999999999999987643
No 44
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=72.41 E-value=3.7 Score=32.81 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
..++.++.++.+.-++..++|+++++.+.-+-=|+.-||.-|||.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45677777766667999999999999999999999999999999943
No 45
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=72.35 E-value=3.6 Score=38.19 Aligned_cols=57 Identities=12% Similarity=0.280 Sum_probs=42.1
Q ss_pred cHHHHHH--HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeE
Q 017095 74 SLGLLTK--KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (377)
Q Consensus 74 SLglLTk--kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (377)
....+.| ..++++...+ +.+.+.++|++|++.|=-+|-+++.|+..|++++.....|
T Consensus 25 ~v~sl~Ral~IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y 83 (275)
T 3mq0_A 25 TVPALRRAVRILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTL 83 (275)
T ss_dssp GHHHHHHHHHHHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEE
T ss_pred cchHHHHHHHHHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcE
Confidence 3444443 3455565544 5799999999999999999999999999999999864444
No 46
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=72.34 E-value=3.5 Score=33.01 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHH
Q 017095 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNV 116 (377)
Q Consensus 78 LTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV 116 (377)
+..+++.++.......++|.++|+.+++.+|.|.-+..-
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 567899999999888999999999999999999877654
No 47
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=72.33 E-value=0.98 Score=36.28 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=34.0
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 3468999999999999999999999999999999874
No 48
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=72.09 E-value=2.8 Score=34.78 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 78 LTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+-++.+.+++. ++.+...++|+.||+.+..+...++-|+.-|+|.+.
T Consensus 6 ~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKK--DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHH--CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 44577888865 366999999999999999999999999999999874
No 49
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=71.58 E-value=2 Score=35.58 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=40.2
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 83 i~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.++...+++.+...++|+.|++.|=.+--+++-||.-|+|+|..
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 444566788899999999999999999999999999999999873
No 50
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=71.11 E-value=3.4 Score=32.39 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhc
Q 017095 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGI 120 (377)
Q Consensus 78 LTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgI 120 (377)
+..+++.++.......++|.++|+.+++.+|.|+-+..-.-|+
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 48 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGE 48 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 5678888988888889999999999999999999887654433
No 51
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=71.08 E-value=3.2 Score=33.58 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+.+.++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 468999999999999999999999999999999873
No 52
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=71.01 E-value=3.6 Score=31.90 Aligned_cols=45 Identities=11% Similarity=0.277 Sum_probs=37.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
.+.++.. +.+.+.++|+.|++.+-.++-.+..|+..|+|++....
T Consensus 28 Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 28 LVCTLVE---GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp HHHHHHT---CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4445533 55899999999999999999999999999999876433
No 53
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.80 E-value=3.5 Score=33.67 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=32.7
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+.++|+.|++.+--++-+++.||.-|+|++.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 5899999999999999999999999999999986
No 54
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=70.57 E-value=4.2 Score=32.15 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhh
Q 017095 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEG 119 (377)
Q Consensus 77 lLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEg 119 (377)
.+..+++.++.......++|.++|+.+++.+|.|+-+..-.-|
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 49 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLG 49 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 3567889999998888899999999999999999887765433
No 55
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=70.45 E-value=2.6 Score=35.07 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=35.2
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 83 i~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.++....++.+.+.++|+.|++.+=-+.-+++-||.-|+|+|..
T Consensus 52 L~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 52 LRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 334444445689999999999999999999999999999999873
No 56
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=70.34 E-value=5.2 Score=27.43 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 144 VDADASILQADIDNLSMEELRVDEQTREL 172 (377)
Q Consensus 144 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~ 172 (377)
+-.+....++++++|+.+...|+++|+++
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 45667889999999999999999999864
No 57
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=70.32 E-value=3 Score=32.55 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=38.9
Q ss_pred HHHHHHHhhC----CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 80 KKFINLIKHA----EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 80 kkFi~ll~~a----p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
++.+++++.. .++.+.+.++|+.|+|+.--+..=++.||.-|+|.+.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 3445555443 4688999999999999988899999999999999887
No 58
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=69.56 E-value=28 Score=31.14 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+.++. .+.+...++|+.|++.+--+|-.++.|+.-|||++..
T Consensus 19 ~IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 19 RILFLLT---KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 3455554 3568999999999999999999999999999999853
No 59
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=69.48 E-value=3.9 Score=33.03 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.++.+.+.++|+.|++.+--++-+++.||.-|+|++..
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 46779999999999999999999999999999999875
No 60
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=69.40 E-value=3 Score=35.96 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=40.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.++...+++.+.+.++|+.|++.+=.+.-+++-||.-|+|+|.
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 445566667889999999999999999999999999999999986
No 61
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=69.26 E-value=7.3 Score=31.11 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=36.0
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
..+.++.. .+ +...++|+.|++.|=-+.-+++.||.-|+|++..
T Consensus 42 ~iL~~l~~--~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSE--ES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTT--CC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHh--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 34444443 44 9999999999999999999999999999999863
No 62
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=69.14 E-value=3.6 Score=32.66 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=33.1
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+...+.++|+.|++.+--++-.++.||..|+|.+..
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 468999999999999999999999999999998763
No 63
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=69.09 E-value=4 Score=33.20 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=38.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+.+++. ++.+...++|+.||+.+.-++..++-|+.-|+|.+.
T Consensus 7 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 456777754 456799999999999999999999999999999876
No 64
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=68.29 E-value=4.8 Score=34.47 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=40.0
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEE
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (377)
+.+.+|. .+.+.+.++|+.|++.+--++--+.+|+..|||++....+..+
T Consensus 62 ~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~ 111 (151)
T 3f6v_A 62 RLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRY 111 (151)
T ss_dssp HHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 3455554 4668999999999999999999999999999999764443333
No 65
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=68.12 E-value=3.6 Score=37.85 Aligned_cols=55 Identities=22% Similarity=0.365 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHH-HhhhccchhhccCC
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITN-VLEGIGLIEKKLKN 129 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN-VLEgIGLIeK~sKN 129 (377)
|..+-++++..+-...+..+++..+|+.|++.++.+|+.+. .|...|+|.+..+.
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 33455677776655566789999999999999999999999 99999999877543
No 66
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=68.06 E-value=3.6 Score=34.22 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 76 glLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
..+-++.+.+++.. +.+...++|+.||+.+..+...++-|+.-|+|.+.
T Consensus 7 d~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 7 DNLDRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp CHHHHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 34456788888664 67999999999999999999999999999999974
No 67
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=68.05 E-value=3.2 Score=33.38 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=32.5
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+.++|+.+++.+-.++-+++-||.-|+|+|.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 3999999999999999999999999999999986
No 68
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=67.92 E-value=1.8 Score=36.54 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=44.5
Q ss_pred CCCCCCcHHHHHHHH----HHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 68 SCRYDSSLGLLTKKF----INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 68 ~~R~d~SLglLTkkF----i~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.|.....|..+..+. +..+. .+.+...++++.|++.+.-+...++.||.-|||+|..
T Consensus 11 ~c~~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 11 SCPVARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 344556677765432 23332 4678999999999999999999999999999999874
No 69
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=67.62 E-value=3.7 Score=33.93 Aligned_cols=37 Identities=27% Similarity=0.147 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.+...++|+.|++.+=-+.-+++-||.-|+|+|..
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 3468999999999999999999999999999999873
No 70
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=67.51 E-value=4 Score=31.32 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=33.5
Q ss_pred CCcccHHHH----HHHhccceehhhhhHHHhhhccchhhcc
Q 017095 91 DGILDLNKA----AETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 91 ~g~ldLn~a----A~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.+...++ |+.|++.+--++-+++-||.-|+|+|..
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 456788888 9999999999999999999999999864
No 71
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=67.40 E-value=4.6 Score=31.57 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhh
Q 017095 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEG 119 (377)
Q Consensus 78 LTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEg 119 (377)
+..+.++++.......++|.++|+.+++.+|.|.-+..-.-|
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G 44 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRG 44 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 456788888888888899999999999999999888765443
No 72
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=67.24 E-value=3.7 Score=34.05 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
|..+-++.+.+++. ++.+...++|+.||+.+..+...++-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44455678888865 467999999999999999999999999999999864
No 73
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=67.22 E-value=3.4 Score=33.55 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=32.2
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+.+.++|+.|++.+=-+.-+++-||.-|+|+|.
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 34899999999999999999999999999999986
No 74
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=67.16 E-value=3.8 Score=33.33 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.++.. .+.+.+.++|+.|++.+--++-.++.|+..|+|.+..
T Consensus 47 IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 47 ITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp HHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 4455543 4568999999999999999999999999999998753
No 75
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=67.03 E-value=3.1 Score=33.42 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+.+.++|+.+++.+--+.-+++-||.-|+|+|.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 67899999999999999999999999999999987
No 76
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=66.57 E-value=2.7 Score=33.38 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 458999999999999999999999999999999874
No 77
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=66.44 E-value=4.5 Score=33.68 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
|..+-++.+.+++.. +.+...++|++||+.+..+...++-|+.-|+|.+.
T Consensus 5 ld~~~~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 5 LDEIDKKIIKILQND--GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 334456788888664 57999999999999999999999999999999874
No 78
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=66.38 E-value=5.1 Score=32.17 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=32.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.++... +.+...++|+.|++.+=-+.-+++-||.-|+|+|.
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 34444443 36899999999999999999999999999999987
No 79
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=66.19 E-value=4.9 Score=31.68 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.++.. .+.+.+.++|+.+++.+--++-+++-||.-|+|++.
T Consensus 38 iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 4444444 346899999999999999999999999999999986
No 80
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=66.14 E-value=3.5 Score=32.54 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999986
No 81
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=66.12 E-value=16 Score=32.87 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=40.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC-CeE
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK-NRI 131 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK-N~i 131 (377)
.++++... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++... ..|
T Consensus 11 iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y 60 (241)
T 2xrn_A 11 IMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGF 60 (241)
T ss_dssp HHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeE
Confidence 45555443 34689999999999999999999999999999999754 344
No 82
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=66.10 E-value=2.5 Score=31.92 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=36.6
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.++.. .+.+.+.++|+.|++.+-.+|-.++.||.-|+|++..
T Consensus 21 iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 21 IMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4444433 3468999999999999999999999999999999753
No 83
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=66.08 E-value=4.3 Score=33.19 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 4578999999999999999999999999999999863
No 84
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=66.05 E-value=4 Score=32.59 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=33.8
Q ss_pred CcccHHHHHHHh-ccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+...++|+.| ++.+--++.+++.||.-|||++..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 568999999999 999999999999999999999873
No 85
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=65.87 E-value=5.6 Score=33.55 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=38.5
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+-++-..+++.+.+.++|++++|.++-+..|+..|...|||+..
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 3344444446778999999999999999999999999999999854
No 86
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=65.68 E-value=4.4 Score=32.01 Aligned_cols=58 Identities=24% Similarity=0.407 Sum_probs=43.7
Q ss_pred CCCCCCCcHHHHHHHH----HHHHhhCCCCcccHHHHHHHhc-cceehhhhhHHHhhhccchhhcc
Q 017095 67 GSCRYDSSLGLLTKKF----INLIKHAEDGILDLNKAAETLE-VQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 67 ~~~R~d~SLglLTkkF----i~ll~~ap~g~ldLn~aA~~L~-VqKRRIYDItNVLEgIGLIeK~s 127 (377)
..|.....|..+..++ +.++ . .+.+...++++.++ +.+..++-.++.||.-|||+|..
T Consensus 11 ~~c~~~~~l~~l~~~~~~~IL~~L--~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 11 EECPVRKSMQIFAGKWTLLIIFQI--N-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TTCHHHHHHHHHTSSSHHHHHHHH--T-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHcCccHHHHHHHH--H-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 3455555566555432 2233 2 57799999999995 99999999999999999999874
No 87
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=65.58 E-value=4.6 Score=33.54 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
|...-.+.+.++.. ++.+...++|+.||+.+.-++..++-|+.-|+|.+.
T Consensus 5 ld~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 5 LDDIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33344577787765 467999999999999999999999999999999753
No 88
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=64.93 E-value=3.7 Score=32.50 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=33.4
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+.+.++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 348999999999999999999999999999999873
No 89
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=64.92 E-value=4.5 Score=34.07 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
|...-++.+.+++. ++.+...++|+.||+.+..++..++-|+.-|+|.+.
T Consensus 8 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 44455678888866 456899999999999999999999999999999864
No 90
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=64.24 E-value=5.4 Score=31.08 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=38.5
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+++++. .+.+.+.++|+.|+|+.=-|--.++.||.-|+|.|.
T Consensus 5 ~~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 456667755 578999999999999888888889999999999987
No 91
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=64.20 E-value=23 Score=29.06 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=40.9
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 78 LTkkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
+...+...+.. .|+..+ ...++|+.|+|+|=-+-.....|+.-|||+....
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 44455555433 477778 8999999999999999999999999999987643
No 92
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=64.08 E-value=4.1 Score=32.69 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=36.4
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.++...++ ...++|+.|++.+=-+.-+++-||.-|+|+|..
T Consensus 42 iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 42 ILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 4444555444 999999999999999999999999999999873
No 93
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=63.98 E-value=11 Score=32.13 Aligned_cols=91 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCc---ccHHHHHHHhcccee--hhhhhHHHhhhccch--hhccCCeEEEeccCCCCCCcchhHHHHHH--
Q 017095 82 FINLIKHAEDGI---LDLNKAAETLEVQKR--RIYDITNVLEGIGLI--EKKLKNRIRWKGLDNSIPGEVDADASILQ-- 152 (377)
Q Consensus 82 Fi~ll~~ap~g~---ldLn~aA~~L~VqKR--RIYDItNVLEgIGLI--eK~sKN~i~W~G~~~s~~~~~~~~~~~Lk-- 152 (377)
|+..+...+.-. +.+.++|+.+||..| |.| |..||+ .+...|.++.-..+.. ..-..+..|+
T Consensus 2 ~~~~~~~~k~M~~~~~~I~evA~~~gvs~~tLR~Y------e~~Gll~p~~r~~~g~R~Y~~~dl---~~l~~I~~lr~~ 72 (148)
T 3gpv_A 2 SLALYLGNKRMNDMYYTIGQVAKMQHLTISQIRYY------DKQGLFPFLQRNEKGDRIFNEEAL---KYLEMILCLKNT 72 (148)
T ss_dssp -------------CCBCHHHHHHHTTCCHHHHHHH------HHTTCCTTCEECTTCCEEBCHHHH---HHHHHHHHHHTT
T ss_pred CCcccCCCCccccCceeHHHHHHHHCcCHHHHHHH------HHCCCCCCCcCCCCCCeecCHHHH---HHHHHHHHHHHc
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017095 153 ----------------------ADIDNLSMEELRVDEQTRELRERLRELIE 181 (377)
Q Consensus 153 ----------------------~El~~L~~~E~~LD~lI~~~~q~L~~Lte 181 (377)
+-.+-|..+.+.|++.|..+++.+..|..
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 123 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQ 123 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 94
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.79 E-value=4.6 Score=32.13 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
..+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 45678999999999999999999999999999999863
No 95
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=63.63 E-value=5.7 Score=32.35 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=33.8
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+.+.++|+.|++.+--+.-+++-||.-|+|+|.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 456899999999999999999999999999999986
No 96
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=63.49 E-value=6.7 Score=33.96 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+.++...+++.+...++|+.+++.+.-+.-|+..|..-|+|+-.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4455555566788999999999999999999999999999999754
No 97
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=63.45 E-value=4.9 Score=30.06 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhc----cceehhhhhHHHhhhccchhhcc
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLE----VQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~s 127 (377)
..++.++.. .+.+...++++.|+ +.+--+|-+++.|+.-|+|++..
T Consensus 12 ~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 455666655 56799999999998 46778999999999999999874
No 98
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=63.37 E-value=5.1 Score=32.41 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhh
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (377)
.+.++... +.+...++|+.|++.+-.+.-+++-||.-|+|++
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34444443 4599999999999999999999999999999998
No 99
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=63.13 E-value=6.6 Score=35.53 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.++++... ++.+.+.++|+.|++.|=-+|-+++.|+..|+|++.
T Consensus 12 ~iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 12 EILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 345555543 346899999999999999999999999999999987
No 100
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=62.84 E-value=6.7 Score=30.33 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCC-cccHHHHHHHhccceehhhhhHHHhhh
Q 017095 78 LTKKFINLIKHAEDG-ILDLNKAAETLEVQKRRIYDITNVLEG 119 (377)
Q Consensus 78 LTkkFi~ll~~ap~g-~ldLn~aA~~L~VqKRRIYDItNVLEg 119 (377)
+..+++.++.+.... .+++.++|+.+++.+|.|+-+..-.-|
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g 45 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFG 45 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 456778888777655 899999999999999999887765443
No 101
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=62.82 E-value=4.5 Score=32.89 Aligned_cols=37 Identities=14% Similarity=0.350 Sum_probs=34.3
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
..+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 54 ~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp SCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3457899999999999999999999999999999986
No 102
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=62.78 E-value=4.2 Score=37.50 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=38.6
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEe
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (377)
+.+++.++|+++++..|+++-+..+|.++|++++...+.|.-.
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t 82 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANT 82 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEecC
Confidence 6799999999999999999999999999999998876666553
No 103
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=62.53 E-value=3 Score=34.77 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=45.5
Q ss_pred CCCCCCcHHHHHHHHH-HHHhhCCCCcccHHHHHHHh-ccceehhhhhHHHhhhccchhhcc
Q 017095 68 SCRYDSSLGLLTKKFI-NLIKHAEDGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 68 ~~R~d~SLglLTkkFi-~ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.|.....|..+..++- .++..-..+.+...++++.| ++.+.-+...++.||.-|||+|..
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 4555666777775542 11211115779999999999 799999999999999999999874
No 104
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=62.48 E-value=3.5 Score=33.30 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+.++.. +.+.+.++|+.|++.+--++-.++.|+..|+|++..
T Consensus 25 ~IL~~L~~---~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 25 RILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 45555543 447888999999999999999999999999998763
No 105
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=62.46 E-value=5.6 Score=32.81 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+.+++. ++.+...++|+.||+.+-.+...++.|+.-|+|.+.
T Consensus 6 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQY--NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHTT--CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 456777754 567999999999999999999999999999999873
No 106
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=62.46 E-value=5.4 Score=32.41 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhh
Q 017095 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLE 118 (377)
Q Consensus 77 lLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLE 118 (377)
.+..++++++.+.....++|.++|+.+++.+|.|.-+..-.-
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKET 52 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467789999999888889999999999999999988775443
No 107
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=62.11 E-value=6.1 Score=31.67 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.+++++. .|.+.+.++|+.|+|+.=-|-=.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 355667755 5889999999999998888888899999999999984
No 108
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=62.02 E-value=9.8 Score=33.48 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=43.1
Q ss_pred CcHHHHH-HHHHHHHh---hCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 73 SSLGLLT-KKFINLIK---HAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 73 ~SLglLT-kkFi~ll~---~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
.++.... ....+.+. -.|+..+...++|++|||+|=-+=+.+..|+.-|||+....
T Consensus 15 ~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 15 GSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp -CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 4555433 44444443 35788999999999999999999999999999999997643
No 109
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=61.55 E-value=4.2 Score=32.74 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
..+.+...++|+.|++.+-.+.-+++-||.-|+|+|.
T Consensus 47 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp TTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 4678999999999999999999999999999999987
No 110
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=61.38 E-value=5.6 Score=32.36 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=32.8
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+...++|+.|++.+--+.-+++-||.-|+|+|.
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 66899999999999999999999999999999987
No 111
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=61.02 E-value=14 Score=28.81 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 76 GLLTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 76 glLTkkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
..+...+...+.. .++..+ ...++|+.|+|++=-+...++.|+.-|+|++....
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~ 71 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 71 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 4455555554433 356677 99999999999999999999999999999887543
No 112
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=60.61 E-value=7 Score=36.16 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 78 LTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
...+.+.++... +.+.+.++|+.|++.|.-++-+++.|+.-|+|++...
T Consensus 153 ~~~~IL~~L~~~--~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r 201 (244)
T 2wte_A 153 EEMKLLNVLYET--KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGK 201 (244)
T ss_dssp HHHHHHHHHHHH--TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 445566666443 4589999999999999999999999999999999743
No 113
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=60.60 E-value=9 Score=29.88 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCC-CcccHHHHHHHhccceehhhhhHHHh
Q 017095 78 LTKKFINLIKHAED-GILDLNKAAETLEVQKRRIYDITNVL 117 (377)
Q Consensus 78 LTkkFi~ll~~ap~-g~ldLn~aA~~L~VqKRRIYDItNVL 117 (377)
...+.++++.+... ..++|.++|+.+++.+|.|.-+..-.
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 35678888888887 89999999999999999998776543
No 114
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=60.19 E-value=4 Score=37.79 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=42.5
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEe
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (377)
..+.+. ++.+++.++|+++++..|.++-+..+|.++|++++..++.|.-.
T Consensus 30 lf~~l~---~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t 79 (332)
T 3i53_A 30 VADHIA---AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLT 79 (332)
T ss_dssp HHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEEC
T ss_pred hHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcC
Confidence 444553 36899999999999999999999999999999999877777653
No 115
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=59.61 E-value=7.1 Score=32.98 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+.+.++|+.|++.+--++-+++-||.-|+|++..
T Consensus 85 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 85 EGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp SCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 358999999999999999999999999999999873
No 116
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=59.24 E-value=9.2 Score=31.51 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
+.+...++|+.|+|.+=-+--+++.||.-|+|++...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 4578999999999999999999999999999998743
No 117
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=58.97 E-value=6.6 Score=32.76 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=32.9
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+.+.++|+.|++.+--++-+++-||.-|+|+|.
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 45899999999999999999999999999999986
No 118
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=58.52 E-value=7.5 Score=35.57 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=36.4
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeE
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (377)
++.+.+.++|+.+++.|--+|-+++.|+..|+|++.....|
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y 76 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSY 76 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeE
Confidence 46799999999999999999999999999999999754433
No 119
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=57.71 E-value=6.7 Score=32.10 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=33.4
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+...+.++|+.|++.+--++-.++.|+..|+|.+..
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 568999999999999999999999999999998754
No 120
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=57.45 E-value=7.4 Score=33.62 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
|..+-++.+.+++. ++.+...++|++|++.+--+...++-|+.-|+|.+.
T Consensus 15 ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 44555688888876 356999999999999999999999999999999864
No 121
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=57.26 E-value=12 Score=30.94 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=41.6
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 78 LTkkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
+...+...+.. .|+..+ ...++|+.|+|+|--+-..++.|+.-|+|++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 33444444433 467788 99999999999999999999999999999987544
No 122
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=57.20 E-value=4.1 Score=37.36 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC-CeEE
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK-NRIR 132 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK-N~i~ 132 (377)
++.+.+.++|+++++.|=-+|-+++.|+..|++++... ..|+
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~ 61 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYR 61 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEE
Confidence 57899999999999999999999999999999999865 4553
No 123
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=57.01 E-value=7.8 Score=32.75 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=44.8
Q ss_pred CCCCCCcHHHHHHH--HHHHHhhCCCCcccHHHHHHHh-ccceehhhhhHHHhhhccchhhcc
Q 017095 68 SCRYDSSLGLLTKK--FINLIKHAEDGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 68 ~~R~d~SLglLTkk--Fi~ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.|-....|..|..| ++-|..-. .|....+++++.| ++.++-+...+..||.-|||+|..
T Consensus 13 ~Cpi~~~l~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 13 GSPVEFTLDVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp CCHHHHHHHHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 34445556666544 22222223 6889999999999 999999999999999999999984
No 124
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=56.98 E-value=8.4 Score=33.33 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 74 SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.|..+-++.+.+++. ++.+...++|++||+.+..+..-++-|+.-|+|.+.
T Consensus 24 ~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 355566788888876 467999999999999999999999999999999874
No 125
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=56.77 E-value=5 Score=36.75 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=37.0
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEE
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (377)
++.+++.++|+++++..|+++-+..+|.+.|++++. .+.|.-
T Consensus 37 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y~~ 78 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGYRL 78 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEEec
Confidence 478999999999999999999999999999999874 455554
No 126
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=56.57 E-value=5.3 Score=37.46 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=38.6
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEe
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (377)
.++.+++.++|+++++..|.++-+..+|.++|++++ ..+.|.=.
T Consensus 52 ~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~~t 95 (348)
T 3lst_A 52 VDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFALT 95 (348)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEEC
T ss_pred hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEecC
Confidence 457899999999999999999999999999999999 56665443
No 127
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=56.45 E-value=5.4 Score=36.36 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=36.0
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeE
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (377)
++.+.+.++|+.+++.|=-+|-+++.|+..|+|++.. ..|
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~-~~Y 66 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-GRW 66 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-CEE
Confidence 4678999999999999999999999999999999874 444
No 128
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=56.36 E-value=7.5 Score=32.13 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=33.0
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
-.+..++|+++++.++-+..+++-|+.-|+|++...
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 379999999999999999999999999999999743
No 129
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=55.98 E-value=20 Score=33.07 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhh
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (377)
+.+.++.. +.+...++|+.|++.+--++-.+++|+.-|||+.
T Consensus 16 ~IL~~L~~---g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLTC---MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHTT---TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35556643 5688889999999999999999999999999997
No 130
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=55.87 E-value=6.6 Score=31.51 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+...++|+.|++.+--++-+++.||.-|+|++.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 46899999999999999999999999999999986
No 131
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=55.30 E-value=5.3 Score=37.96 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=39.1
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCe-EEE
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR-IRW 133 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~-i~W 133 (377)
+++.+++.++|+++++..|.++-+..+|.++|++++...+. |.-
T Consensus 68 ~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 68 QEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 46789999999999999999999999999999999976665 543
No 132
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.07 E-value=31 Score=24.95 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017095 145 DADASILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (377)
Q Consensus 145 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lte 181 (377)
..++..|+.+--+|+..|+.|+..|..++..+..|-.
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3567888888888999999999999999999877744
No 133
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=54.78 E-value=19 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=23.4
Q ss_pred cccHHHHHHHhcccee--hhhhhHHHhhhccchhh--ccCCeEEE
Q 017095 93 ILDLNKAAETLEVQKR--RIYDITNVLEGIGLIEK--KLKNRIRW 133 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKR--RIYDItNVLEgIGLIeK--~sKN~i~W 133 (377)
.+.+.++|+.+||..+ |.| |..|||.- ...|.++.
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~y------e~~GLl~p~~r~~~g~R~ 42 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYY------DKINLLKPSDYTEGGHRL 42 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHH------HHTTSSCCSEECTTSCEE
T ss_pred CCcHHHHHHHHCcCHHHHHHH------HHCCCCCCCeECCCCCEe
Confidence 4778899999998877 455 55677742 33455554
No 134
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=54.66 E-value=11 Score=31.27 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
++.+...++|+.+++.+=-+--+++-||.-|||.+.
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 467999999999999999999999999999999554
No 135
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=54.66 E-value=4.4 Score=32.87 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=33.9
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.+...++|+.|++.+--+.-+++-||.-|+|++..
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 3568999999999999999999999999999999873
No 136
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=54.44 E-value=23 Score=29.23 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=29.8
Q ss_pred eEEEeccCCCCCC-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017095 130 RIRWKGLDNSIPG-------EVDADASILQADIDNLSMEELRVDEQTRELRERLRELI 180 (377)
Q Consensus 130 ~i~W~G~~~s~~~-------~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lt 180 (377)
-+.|.|.+-.-.. .+.+++..|+..++.|......+.+.|..+.+.|+++.
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789996532111 12344555566666666666666666666666666553
No 137
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=53.61 E-value=6.3 Score=36.83 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=36.8
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCC--eEEE
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN--RIRW 133 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN--~i~W 133 (377)
++.+++.++|+++++..++++-+..+|..+|++++...+ .|.-
T Consensus 47 ~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 47 AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 367999999999999999999999999999999986555 5544
No 138
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=53.50 E-value=7.2 Score=32.11 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=33.7
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+.+.++|+.|++.+=-+.-+++-||.-|+|+|..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 478999999999999999999999999999999873
No 139
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=53.02 E-value=14 Score=29.05 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc--cCCeEEEe
Q 017095 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK--LKNRIRWK 134 (377)
Q Consensus 78 LTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~--sKN~i~W~ 134 (377)
+.+.||++++.+ .++.|.++|..|++..--.-|=++-||.-|.|.=. .+.+|.++
T Consensus 8 ll~~Fi~yIk~~--Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyI 64 (72)
T 1wi9_A 8 FLTEFINYIKKS--KVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYI 64 (72)
T ss_dssp HHHHHHHHHHHC--SEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEEC
T ss_pred HHHHHHHHHHHc--CeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEe
Confidence 448999999884 68999999999999766666777778887776533 23444444
No 140
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=52.94 E-value=4.9 Score=32.92 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 356899999999999999999999999999999986
No 141
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=52.68 E-value=4.3 Score=32.15 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=32.8
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+...++|+.+++.+-.++-+++-||.-|+|++.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 45789999999999999999999999999999986
No 142
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=52.66 E-value=15 Score=29.46 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=41.6
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 78 LTkkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
+...+...+.. .|+..+ ...++|+.|+|+|--+-..++.|+.-|+|++....
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 44455555543 467777 89999999999999999999999999999877543
No 143
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=51.86 E-value=9.8 Score=30.50 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=41.2
Q ss_pred CCcHHHHHHH----HHHHHhhCCCCccc--HHHHHHHh-ccceehhhhhHHHhhhccchhhccC
Q 017095 72 DSSLGLLTKK----FINLIKHAEDGILD--LNKAAETL-EVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 72 d~SLglLTkk----Fi~ll~~ap~g~ld--Ln~aA~~L-~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
...|..|..+ .+.++. .|... ..++++.| ++.+..+.-.+..||.-|||+|...
T Consensus 18 ~~~l~~l~~~wrl~IL~~L~---~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVLG---NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHHT---SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHcCccHHHHHHHHh---cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4456666533 222332 45556 99999999 9999999999999999999998754
No 144
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=51.33 E-value=11 Score=31.39 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=40.3
Q ss_pred HHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 80 KKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 80 kkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
..+...+.. .|+..+ ...++|+.|+|+|--+-..++.|+.-|+|++....
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 344444433 467778 89999999999999999999999999999987543
No 145
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=51.32 E-value=11 Score=31.51 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.+..=..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred cHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 444456688889999988777789999999999999999984
No 146
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=51.06 E-value=7.8 Score=31.36 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
..+.+...++|+.|++.+=.+.-+++-||.-|+|++.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4567999999999999999999999999999999984
No 147
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=50.46 E-value=11 Score=30.93 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
.+..=..|...+++++.+..-..+.+.++|++.||.|.-||
T Consensus 29 ~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 69 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIY 69 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHH
Confidence 34445678888999998887778999999999999999999
No 148
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=50.41 E-value=26 Score=28.63 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 78 LTkkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
+...+...+.. .|+..+ ...++|+.|+|.|--+-..+..|+.-|+|++....
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 73 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC
Confidence 44555555543 467777 59999999999999999999999999999987543
No 149
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=50.34 E-value=16 Score=30.75 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=38.1
Q ss_pred HHHHHHHhhCC-CCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 80 KKFINLIKHAE-DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 80 kkFi~ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
-+.+.++-..+ ++.+.+.++|+.+++.++-+.-|+..|..-|||+-.
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 34444454444 458999999999999999999999999999999843
No 150
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=49.72 E-value=42 Score=24.57 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017095 145 DADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 182 (377)
Q Consensus 145 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted 182 (377)
..+...|+.++..|..+..+|-+.++...++|..|.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999988764
No 151
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=49.58 E-value=6.9 Score=30.69 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
++..+...++|+.|||.+=-+...++.|+.-|+|++.
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445899999999999999999999999999999876
No 152
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=49.18 E-value=19 Score=28.17 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhcccee-hhhhhHHHhhhccchhhccCCeEEEe
Q 017095 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKR-RIYDITNVLEGIGLIEKKLKNRIRWK 134 (377)
Q Consensus 77 lLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKR-RIYDItNVLEgIGLIeK~sKN~i~W~ 134 (377)
..-.+.+.+++.. |.....++|+.|++.+= -+==..+.||.=|+|++...+.-.|.
T Consensus 11 ~~~~~IL~~Lk~~--g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 11 EIKEKICDYLFNV--SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHT--CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hHHHHHHHHHHHc--CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 4557888888775 45789999999999774 66777888999999998866666774
No 153
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=49.04 E-value=4.1 Score=32.65 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 468999999999999999999999999999999863
No 154
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=49.03 E-value=9.8 Score=36.88 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=39.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
++.+|.+.+++.+.+.++|++|++.+=.+==+++-||.-|||+|.
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 344445556688999999999999999999999999999999997
No 155
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=48.91 E-value=17 Score=31.92 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 89 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 89 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
.|+..+.-.++|++|||+|=-+=+.+..|+.-|||+.....
T Consensus 31 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 71 (218)
T 3sxy_A 31 KLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRV 71 (218)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTT
T ss_pred CCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 57888999999999999999999999999999999976443
No 156
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=48.76 E-value=9.4 Score=35.52 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEe
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (377)
++.+.+.++|+++++..+.++-+..+|...|++++.....|.-.
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t 93 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPT 93 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 46789999999999999999999999999999998666666543
No 157
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=48.46 E-value=13 Score=31.47 Aligned_cols=46 Identities=15% Similarity=0.370 Sum_probs=40.2
Q ss_pred HHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 79 TKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 79 TkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
-++.+.+++. ++.+...++|++||+++--+..-++-|+.-|+|.+.
T Consensus 5 d~~il~~L~~--~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQE--DSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHTT--CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH--CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 4567777754 677899999999999999999999999999999864
No 158
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=48.22 E-value=13 Score=30.74 Aligned_cols=53 Identities=9% Similarity=0.189 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHh--ccceehhhhhHHHhhhccchhhccCC
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETL--EVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L--~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
+...-++.+.+|+. +|.+...++|+.+ ++++-.+-.-+.+|+.-|||++....
T Consensus 11 md~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CCHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 33444788888865 3579999999999 99999999999999999999987444
No 159
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=47.95 E-value=10 Score=32.10 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=34.4
Q ss_pred hCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 88 HAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 88 ~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.....-.+..++|+++++..+-|+.+++-|+.=|+|++.
T Consensus 46 ~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 46 EKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp TTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred hcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 333455799999999999999999999999999999985
No 160
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=47.68 E-value=10 Score=35.43 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEe
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (377)
++.+.+.++|+++++..|+++-+..+|.++|++++.. +.|.-.
T Consensus 62 ~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~t 104 (359)
T 1x19_A 62 EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSLT 104 (359)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEC
T ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEecC
Confidence 4789999999999999999999999999999999874 455443
No 161
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=47.42 E-value=11 Score=29.71 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhc----cceehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLE----VQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~s 127 (377)
..+.++.. .+.+...++|+.|+ +.+=.+|-+++.|+.-|+|+|..
T Consensus 14 ~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 14 EVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 44555544 45689999999999 67999999999999999999874
No 162
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=47.21 E-value=16 Score=33.41 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=36.4
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEE
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (377)
.+.+.+.++|+.+++.|--+|-+++.|+..|++++.. ..|.
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y~ 74 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAFW 74 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 4679999999999999999999999999999999973 4553
No 163
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=46.80 E-value=5.5 Score=34.07 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.+..-..|....++++.+..-.-+.+.++|++.||.|.-||=
T Consensus 38 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 79 (225)
T 2id3_A 38 TARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYR 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 344445677778888888766789999999999999999984
No 164
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=46.69 E-value=58 Score=26.85 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=34.1
Q ss_pred HhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 86 IKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 86 l~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+...++ .+...++|+.|++.+=.+--+++-||.-|+|+|..
T Consensus 40 L~~~~~-~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 40 INRLPP-EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HHHSCT-TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHcCC-CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 334433 35678999999999999999999999999999873
No 165
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=46.45 E-value=14 Score=35.14 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc-cCCeEEEe
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK-LKNRIRWK 134 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-sKN~i~W~ 134 (377)
.+.+.+++ .++.+...++|++|+|+++-|+--++.|+..|++... ...-|+..
T Consensus 8 ~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~ 61 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLP 61 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred HHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCCCcEEe
Confidence 45666774 5678999999999999999999999999999998533 22245444
No 166
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=45.57 E-value=62 Score=27.30 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017095 146 ADASILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (377)
Q Consensus 146 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lte 181 (377)
.++..||+|+++++.+.++|-+.-..-.+.+|+...
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~ 39 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACY 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999988887776666666543
No 167
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=45.56 E-value=9.9 Score=27.91 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.9
Q ss_pred CCCcccHHHHHHHhccceehhhhhHH
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITN 115 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItN 115 (377)
++..+.+.++|+.|+|.|..||..++
T Consensus 7 ~~~~l~~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp SSSEECHHHHHHHHSSCHHHHHHHHH
T ss_pred cccccCHHHHHHHHCcCHHHHHHHHH
Confidence 46689999999999999999999987
No 168
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=45.34 E-value=8.7 Score=30.87 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=35.2
Q ss_pred CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 89 AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 89 ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+++.+ ...++|+.|+|+|=-+-..+..|+.-|+|++..
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356666 999999999999999999999999999999875
No 169
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.27 E-value=39 Score=24.71 Aligned_cols=33 Identities=12% Similarity=0.370 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 145 DADASILQADIDNLSMEELRVDEQTRELRERLR 177 (377)
Q Consensus 145 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~ 177 (377)
..++..|+.|++.|+.+-..|-+.+.+++.+|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346889999999999999888888888887774
No 170
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=45.02 E-value=10 Score=33.04 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+....+.++|+.|++.+--++..++.||.-|+|.+..
T Consensus 21 ~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 21 NGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred hCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 45578999999999998889999999999999998863
No 171
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=44.94 E-value=12 Score=35.48 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=35.6
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeE
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (377)
++.+.+.++|+++++..|.++-+..+|.++|++++. .+.|
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~-~~~y 87 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE-EDRY 87 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec-CCEE
Confidence 478999999999999999999999999999999875 4443
No 172
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=43.06 E-value=15 Score=33.88 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=37.8
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 83 i~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+..+...+++.+...++|+.+++.+=.+--+++-||.-|+|+|.
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 33444555557999999999999999999999999999999997
No 173
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.70 E-value=56 Score=24.22 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017095 147 DASILQADIDNLSMEELRVDEQTRELRERLRELI 180 (377)
Q Consensus 147 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lt 180 (377)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888888888887776664
No 174
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=42.40 E-value=12 Score=28.77 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=32.0
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchh
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIE 124 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 124 (377)
+++.+.+.++|+.|++.|=.++-+++.||.-|+|.
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 61 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVE 61 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc
Confidence 34468999999999999999999999999999993
No 175
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=42.13 E-value=21 Score=31.80 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHH
Q 017095 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITN 115 (377)
Q Consensus 78 LTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN 115 (377)
+..+|++++.+.....++|.++|+.+++.+|.+.-+.-
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 57889999999998999999999999999999988763
No 176
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=41.34 E-value=17 Score=32.73 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=42.1
Q ss_pred HHHHHHHHHhh---CCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 78 LTKKFINLIKH---AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 78 LTkkFi~ll~~---ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
+...+...+.. .|+..+...++|+.|||+|=-|-.-++.|+.-|||+....
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44455544433 5888999999999999999999999999999999998744
No 177
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=40.44 E-value=18 Score=31.95 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=38.6
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.+.++. ++.+...++|+.|++.+--++-.++.||.-|+|++.
T Consensus 23 ~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45666665 367999999999999999999999999999999987
No 178
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=39.74 E-value=90 Score=24.94 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=29.7
Q ss_pred HHHHhhCCCCcccHHHHHHHh---c--cce-ehhhhhHHHhhhccchhhc
Q 017095 83 INLIKHAEDGILDLNKAAETL---E--VQK-RRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 83 i~ll~~ap~g~ldLn~aA~~L---~--VqK-RRIYDItNVLEgIGLIeK~ 126 (377)
+.++...|....+|....... . +.. --||-+++-||.-|+|++.
T Consensus 19 L~~L~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~ 68 (118)
T 2esh_A 19 LLLVAEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEE
Confidence 344555444444443333322 2 788 9999999999999999876
No 179
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=39.29 E-value=82 Score=24.95 Aligned_cols=75 Identities=12% Similarity=0.191 Sum_probs=36.0
Q ss_pred HhccceehhhhhHHHhhhccchhhccCCeEEEeccCCCCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 102 TLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPG------EVDADASILQADIDNLSMEELRVDEQTRELRER 175 (377)
Q Consensus 102 ~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~~s~~~------~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~ 175 (377)
.|..+++++-++.+=|+.+ . ...+.|+=+|.-..... .+..++..+..+++.|..+...+...+..++..
T Consensus 31 ~l~~~~~e~~~~~~eL~~l---~-~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 31 KVQLELTEAKKALDEIESL---P-DDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTS---C-TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC---C-CCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544 3 23445666663222110 122334444455555555555555555555555
Q ss_pred HHHHh
Q 017095 176 LRELI 180 (377)
Q Consensus 176 L~~Lt 180 (377)
|+.+.
T Consensus 107 l~~~~ 111 (117)
T 2zqm_A 107 IQSAL 111 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 180
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=39.21 E-value=13 Score=32.79 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHhccceehhhhhHH
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITN 115 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItN 115 (377)
.+..+.+.++|+.|+|.+.|+|+.+.
T Consensus 28 ~~~~LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 28 DEPTYDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp TSCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCceEcHHHHHHHhCCCHHHHHHHHH
Confidence 34789999999999999999999765
No 181
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.18 E-value=54 Score=26.05 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017095 145 DADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 182 (377)
Q Consensus 145 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted 182 (377)
...+..|+.|+..|..+-+.+.-.|..++++-+++-.|
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776666666666666666666443
No 182
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=39.07 E-value=26 Score=30.33 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHHHHHh-hCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 81 KFINLIK-HAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 81 kFi~ll~-~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+.+-++- ...++.+.+.++|+.+++.++-+.-|+..|..-|||+-.
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 3444443 334568999999999999999999999999999999854
No 183
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=38.91 E-value=70 Score=28.92 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHHHHH-hhCCCCc---------------ccHHHHHHHhcc-ceehhhhhHHHhhhccch
Q 017095 71 YDSSLGLLTKKFINLI-KHAEDGI---------------LDLNKAAETLEV-QKRRIYDITNVLEGIGLI 123 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll-~~ap~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLI 123 (377)
++.+...|-+.|..|. +-+||.. ..||+|=+.|.- .||+.||. -|.|+.+-
T Consensus 55 ~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~--~l~G~~~~ 122 (207)
T 3bvo_A 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL--KLHGIEIP 122 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HhcCCCcc
Confidence 4567889999999986 4466543 356777777764 78889997 45565543
No 184
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=38.36 E-value=29 Score=28.32 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
|.+..-..|....++++.+..-..+.+.++|++.||.|.-||=
T Consensus 13 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 55 (213)
T 2qtq_A 13 ETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKY 55 (213)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhH
Confidence 3445556788889999988777789999999999999999883
No 185
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=38.22 E-value=35 Score=28.41 Aligned_cols=48 Identities=10% Similarity=0.231 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 77 lLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
...-+.+-+|-..+++ .+.++|+++++..+-+..|+.-|..-|||+-.
T Consensus 9 ~yAl~~L~~La~~~~~--s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 9 AVAIHILSLISMDEKT--SSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHHHTCSCC--CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHhCCCC--CHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 3344444455444553 99999999999999999999999999999755
No 186
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=38.09 E-value=25 Score=22.37 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=22.3
Q ss_pred ccHHHHHHHhccceehhhhhHHHhhh
Q 017095 94 LDLNKAAETLEVQKRRIYDITNVLEG 119 (377)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEg 119 (377)
+...++|+.|+|.+.-||-+++-++.
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 67999999999999999998875544
No 187
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=37.87 E-value=30 Score=28.36 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 69 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 69 ~R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.|....=..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 13 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (207)
T 2rae_A 13 RRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred cchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhh
Confidence 34455556788889999988777789999999999999999984
No 188
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=37.39 E-value=16 Score=34.11 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=39.0
Q ss_pred HHHHhhCCCCcccHHHHHHHhcc---ceehhhhhHHHhhhccchhhc--cCCeEEE
Q 017095 83 INLIKHAEDGILDLNKAAETLEV---QKRRIYDITNVLEGIGLIEKK--LKNRIRW 133 (377)
Q Consensus 83 i~ll~~ap~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~--sKN~i~W 133 (377)
.+.+... ++.+++.++|+++++ ..|+++-+..+|.++|++++. ..+.|.-
T Consensus 42 f~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 42 PNIIQNH-GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp HHHHHHH-TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred hhhhhhc-CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 3444332 357999999999999 588999999999999999987 3455554
No 189
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=37.36 E-value=23 Score=30.61 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=34.9
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 68 SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 68 ~~R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
..|...+=..|..-.++++.+..-.-+.+.++|+++||.|.-||=
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 64 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred ccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 344455567788888999988766779999999999999999984
No 190
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=37.12 E-value=9.8 Score=31.37 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=37.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 67 GSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 67 ~~~R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
...|.+..-..|....++++.+..-.-+.+.++|++.||.|.-||
T Consensus 13 ~~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY 57 (216)
T 3qqa_A 13 PSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIY 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSS
T ss_pred CCcccHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHH
Confidence 345556666778888899998887788999999999999998887
No 191
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=36.41 E-value=18 Score=31.82 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 80 KKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 80 kkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
....+.+.. .|+..+ .-.++|++|||+|=-+=..+..|+.-|||++..
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 14 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 344444433 478889 799999999999999999999999999999774
No 192
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=36.25 E-value=13 Score=30.47 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 78 LTkkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
+...+...+.. .|+..+ ...++|+.|+|+|--+-..++.|+.-|+|++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~ 71 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGI 71 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 44445555533 467777 89999999999999999999999999999987544
No 193
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=35.93 E-value=10 Score=29.13 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=25.4
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccc
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGL 122 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGL 122 (377)
-..+.++|..+||.+.-||-++.-+..-|.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 368999999999999999999987766444
No 194
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=35.75 E-value=26 Score=31.10 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 89 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 89 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
..++.+...++|+.|+|.+-.+-.+++-||.-|||++...
T Consensus 16 ~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 16 TRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred hcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 3577899999999999999999999999999999999854
No 195
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=35.12 E-value=81 Score=26.66 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=48.1
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc--------------------CCeEEEeccCCCC
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL--------------------KNRIRWKGLDNSI 140 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s--------------------KN~i~W~G~~~s~ 140 (377)
+|..+++.-....-.|..--..|..-+-+|=|+..+++.|..+.+.+ .+-+.|.|.+..-
T Consensus 13 ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~v 92 (151)
T 2zdi_C 13 KLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAV 92 (151)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEE
Confidence 44444444333333444444444333555556666666665554211 2346778855321
Q ss_pred CCc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017095 141 PGE-------VDADASILQADIDNLSMEELRVDEQTRELRERLRELI 180 (377)
Q Consensus 141 ~~~-------~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lt 180 (377)
... +.+++..|+..++.|......+.+.|..+...|+.+.
T Consensus 93 E~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 93 ERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2234444555555555555555555555555555543
No 196
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.88 E-value=89 Score=22.79 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017095 147 DASILQADIDNLSMEELRVDEQTRELRERLRELI 180 (377)
Q Consensus 147 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lt 180 (377)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888887776664
No 197
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=34.84 E-value=18 Score=34.15 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=32.0
Q ss_pred cccHHHHHHHhcc------ceehhhhhHHHhhhccchhhc
Q 017095 93 ILDLNKAAETLEV------QKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 93 ~ldLn~aA~~L~V------qKRRIYDItNVLEgIGLIeK~ 126 (377)
.+++.++|+++++ ..|+++-+..+|.++|++++.
T Consensus 62 ~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 62 FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3999999999999 789999999999999999986
No 198
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=34.79 E-value=24 Score=31.64 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=37.4
Q ss_pred CCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 89 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 89 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
.|+..+.-.++|++|||+|=-+=+.+..|+.-|||+.....
T Consensus 47 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 87 (239)
T 2hs5_A 47 RPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNR 87 (239)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 47888999999999999999999999999999999977543
No 199
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=34.79 E-value=22 Score=31.92 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHh
Q 017095 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVL 117 (377)
Q Consensus 78 LTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVL 117 (377)
+..++++++.++.+..++|.++|+.+++++|.|.-+..-.
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~ 43 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDV 43 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5678899999999999999999999999999998875433
No 200
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=34.67 E-value=1.5e+02 Score=26.36 Aligned_cols=89 Identities=4% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccch--hhc-cCCeEEEeccCC-----------------------CCCCcc
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLI--EKK-LKNRIRWKGLDN-----------------------SIPGEV 144 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLI--eK~-sKN~i~W~G~~~-----------------------s~~~~~ 144 (377)
...+.+.++|+.+||.+|-|- -.|.+||+ .+. ..|.++.-..+. .... .
T Consensus 3 ~~~~~i~e~a~~~gvs~~tlr----~y~~~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g~~l~~i~~~~~~~-~ 77 (278)
T 1r8e_A 3 ESYYSIGEVSKLANVSIKALR----YYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLE-M 77 (278)
T ss_dssp CCEEEHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHHHHTTSC-H
T ss_pred CCcEeHHHHHHHHCcCHHHHH----HHHHCCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhC-h
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 017095 145 DADASILQADIDNLSMEELRVDEQTRELRERLRELIENEN 184 (377)
Q Consensus 145 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~~ 184 (377)
......|++.++.|.++.++|.+++..++..+..+.....
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~~ 117 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQME 117 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 201
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=34.66 E-value=33 Score=28.37 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=36.0
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
|.+..=..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 27 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 27 DASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp CGGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 3445556788889999988877789999999999999999983
No 202
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=34.31 E-value=22 Score=32.84 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=35.6
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEE
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (377)
.+++.++|+++++..|.++-+..+|.++|++++.. +.|.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 89999999999999999999999999999999875 5554
No 203
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.28 E-value=22 Score=28.72 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 148 ASILQADIDNLSMEELRVDEQTRELRERLRE 178 (377)
Q Consensus 148 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~ 178 (377)
...|+++++.|+.+...|+..|..+..+|++
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577888888888888888888887766653
No 204
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=34.21 E-value=28 Score=28.49 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhc----cceehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLE----VQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.++.++... .+.+...++++.|+ +.+=-+|-+++-||.-|+|+|..
T Consensus 13 ~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 13 AVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455555543 35689999999998 78889999999999999999874
No 205
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=34.17 E-value=18 Score=33.83 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=36.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHhcc---ceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEV---QKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~ 126 (377)
..+.+... ++.+++.++|+++++ ..|+++-+..+|.++|++++.
T Consensus 35 if~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 35 IADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred hHhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 34444432 357999999999999 588999999999999999887
No 206
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=34.01 E-value=53 Score=23.68 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=27.7
Q ss_pred cHHHHHHHHHH-HHhhCCCCcccHHHHHHHhccceehhhhhHH
Q 017095 74 SLGLLTKKFIN-LIKHAEDGILDLNKAAETLEVQKRRIYDITN 115 (377)
Q Consensus 74 SLglLTkkFi~-ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN 115 (377)
.+..+-+.+|. .+... | +...+|+.||+.|+-||.-+.
T Consensus 17 ~l~~~Er~~I~~aL~~~--g--n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--P--STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--C--SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--C--CHHHHHHHhCCCHHHHHHHHH
Confidence 34556666665 45555 3 678999999999999997654
No 207
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=33.45 E-value=22 Score=28.55 Aligned_cols=45 Identities=7% Similarity=0.055 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccc----eehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEVQ----KRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~Vq----KRRIYDItNVLEgIGLIeK~s 127 (377)
.++.++.. .+.+...++++.|+.. +=-+|-+++-||.-|+|+|..
T Consensus 39 ~VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 39 IVMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 45555554 3468999999999864 567999999999999999874
No 208
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.40 E-value=1e+02 Score=24.09 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=33.2
Q ss_pred HhccceehhhhhHHHhhhccchhhccCCeEEEeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 102 TLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRVDEQTRELRERLREL 179 (377)
Q Consensus 102 ~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~~s~~~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~L 179 (377)
.|.-+++..-++.+=|+.+ .- ....|+=+|.-... .....-...|...++.+...-..|+..+..++.++.++
T Consensus 26 ~l~~~~~e~~~~~~EL~~l---~~-d~~vy~~iG~vfv~-~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 26 TVEMQINETQKALEELSRA---AD-DAEVYKSSGNILIR-VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHS---CT-TCCEEEEETTEEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC---CC-CchHHHHHhHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544 32 33456666633221 12223334444444444444444444444444444444
No 209
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=33.31 E-value=72 Score=26.48 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred ccHHHHHHHhccceehhhhhHHHhhhccchh--hccCCeEEEeccCCCCCCcchhHHHHHH------HHHHHHH------
Q 017095 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KKLKNRIRWKGLDNSIPGEVDADASILQ------ADIDNLS------ 159 (377)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~sKN~i~W~G~~~s~~~~~~~~~~~Lk------~El~~L~------ 159 (377)
+.+.++|+.+||..|-|- -.|..||+. +...|.++.-..+.. ..-..+..|+ +|+..+-
T Consensus 1 ~~I~e~A~~~gvs~~tLR----~ye~~Gll~p~~r~~~g~R~Y~~~dl---~~l~~I~~lr~~G~sl~eI~~~l~~~~~~ 73 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIR----FYEEKGLVTPPMRSENGYRTYTQQHL---NELTLLRQARQVGFNLEESGELVNLFNDP 73 (135)
T ss_dssp CCHHHHHHHHTCCHHHHH----HHHHTTCSCCCEECTTSCEECCHHHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHCcCHHHHH----HHHHCCCCCCCccCCCCCeeeCHHHH---HHHHHHHHHHHCCCCHHHHHHHHHhhhcC
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHhh
Q 017095 160 -----MEELRVDEQTRELRERLRELIE 181 (377)
Q Consensus 160 -----~~E~~LD~lI~~~~q~L~~Lte 181 (377)
.....|.+++..+.+++..|..
T Consensus 74 ~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 74 QRHSADVKRRTLEKVAEIERHIEELQS 100 (135)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
No 210
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=33.31 E-value=22 Score=31.60 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=34.4
Q ss_pred CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhh
Q 017095 89 AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (377)
Q Consensus 89 ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (377)
.|+..+ .-.++|++|||+|=-+=+.+..|+.-|||+.
T Consensus 23 ~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 477788 5889999999999999999999999999997
No 211
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.07 E-value=31 Score=28.45 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=39.1
Q ss_pred HHHHHHhhCCCCcccHHHHHHHh-----ccceehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
..++++.+++++.++..++.+.| .+.+=-+|-.++.|+..|+|.|..
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 35667766554789999999999 788889999999999999999874
No 212
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=32.82 E-value=41 Score=27.38 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 74 SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.=..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 46 (195)
T 2dg7_A 8 AEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFR 46 (195)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHH
Confidence 335677788889988777789999999999999999984
No 213
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.71 E-value=20 Score=26.14 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=28.6
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhccC--CeEEEec
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK--NRIRWKG 135 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK--N~i~W~G 135 (377)
.++..++|+.|||+++-||..+.- |+ -+.+... .++.|.-
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~--G~-P~~~~~g~~~~~~y~~ 43 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ--GM-PVLRGGGKGNEVLYDS 43 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT--TC-CCSSCCCSSSCCEEEH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC--CC-CeEeeCCCcceEEECH
Confidence 367899999999999999999864 55 3333333 3666653
No 214
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=32.63 E-value=72 Score=24.92 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHH-HhhCCCCcccHHHHHHHhccceehhhhhHH
Q 017095 73 SSLGLLTKKFINL-IKHAEDGILDLNKAAETLEVQKRRIYDITN 115 (377)
Q Consensus 73 ~SLglLTkkFi~l-l~~ap~g~ldLn~aA~~L~VqKRRIYDItN 115 (377)
..|..+-+.+|.. +... +| +..+||+.|||.|+.||--+.
T Consensus 36 ~~l~~~Er~~I~~aL~~~-~G--N~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 36 MSADRVRWEHIQRIYEMC-DR--NVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHT-TS--CHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHh-CC--CHHHHHHHhCCCHHHHHHHHH
Confidence 4577777777764 4443 33 467999999999999997643
No 215
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.39 E-value=35 Score=27.92 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=39.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceehhhhhHHHhhhccchhhccC
Q 017095 82 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
.++++.++ ++.++..++.+.| ++.+=-+|-.++.|+..|+|.|..-
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 56666654 5679999999999 7899999999999999999998753
No 216
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=32.26 E-value=41 Score=26.84 Aligned_cols=40 Identities=8% Similarity=0.005 Sum_probs=34.4
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 72 d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
+..-..|....++++.+..-..+.+.++|++.||.|.-||
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 47 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLF 47 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHH
Confidence 3444678888999998877788999999999999999999
No 217
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.02 E-value=1e+02 Score=22.85 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 148 ASILQADIDNLSMEELRVDEQTRELRERLREL 179 (377)
Q Consensus 148 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~L 179 (377)
...|+.+++.|..+-..|...|..++..+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776665444
No 218
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=31.59 E-value=42 Score=27.03 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 74 SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.=..|....++++.+..-..+.+.++|++.||.|.-||=
T Consensus 18 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 56 (206)
T 3kz9_A 18 RKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFN 56 (206)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHH
Confidence 345677788889988877889999999999999999983
No 219
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.34 E-value=85 Score=24.85 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017095 148 ASILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (377)
Q Consensus 148 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lte 181 (377)
...|...++.+...-..|+..+..++.++.++..
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666677777777777666643
No 220
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=31.33 E-value=22 Score=27.14 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=29.5
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEEeccC
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLD 137 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~ 137 (377)
....+.+.+||+-|++.+..+|.+++- +.....+.|.|..
T Consensus 13 ~K~~LTi~EaAeylgIg~~~l~~L~~~--------~~~~~~~~~iG~~ 52 (70)
T 1y6u_A 13 ERYTLTIEEASKYFRIGENKLRRLAEE--------NKNANWLIMNGNR 52 (70)
T ss_dssp TSSEEEHHHHHHHTCSCHHHHHHHHHH--------CTTCSSEEEETTE
T ss_pred ccceeCHHHHHHHHCcCHHHHHHHHHc--------CCCCCcEEEeCCE
Confidence 356799999999999999999998742 1123445677743
No 221
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.16 E-value=25 Score=35.43 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 017095 148 ASILQADIDNLSM 160 (377)
Q Consensus 148 ~~~Lk~El~~L~~ 160 (377)
.+++.+|+..|+.
T Consensus 86 skkml~~~~~~e~ 98 (409)
T 1m1j_C 86 SKKIIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 222
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=30.41 E-value=32 Score=27.44 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 74 SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
.=..|....++++.+..-..+.+.++|++.||.|.-||
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 46 (188)
T 3qkx_A 9 LAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIY 46 (188)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 33457778889998887778999999999999999999
No 223
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=30.28 E-value=43 Score=27.14 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeE
Q 017095 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (377)
Q Consensus 76 glLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (377)
..+...+.++++. .+.+++.++-+.||++|+..-=|..-|..+|+..|++-.++
T Consensus 65 ~~~~~~l~~~~~~--~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R~ 118 (121)
T 2pjp_A 65 VEFANMIRDLDQE--CGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHL 118 (121)
T ss_dssp HHHHHHHHHHHHH--HSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HHHHHHHHHHHHH--CCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEee
Confidence 3444555555554 37899999999999999999999999999999988754443
No 224
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=30.25 E-value=2.8e+02 Score=24.33 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHh-hCCCCc-------ccHHHHHHHhcc-ceehhhhhHHHhhhccchhhccCCeEEEeccC
Q 017095 67 GSCRYDSSLGLLTKKFINLIK-HAEDGI-------LDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGLD 137 (377)
Q Consensus 67 ~~~R~d~SLglLTkkFi~ll~-~ap~g~-------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~ 137 (377)
+..+++.+...|-+.|..+.. -+||.. .-|++|=+.|.= .+|+.||..= +.|+.+-.-.... +..
T Consensus 24 ~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l-~~g~~~~~e~~~~-----~~~ 97 (181)
T 3uo3_A 24 KLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL-LRNIDLTQEQTSN-----EVT 97 (181)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH-HHCCCTTSHHHHH-----HHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH-HhCCCcccccccc-----ccc
Confidence 344478899999999999875 467753 468888888876 8999999731 1455443311000 000
Q ss_pred CCCCCcchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 017095 138 NSIPGEVDADASILQADIDN------LSMEELRVDEQTRELRERLRELIEN 182 (377)
Q Consensus 138 ~s~~~~~~~~~~~Lk~El~~------L~~~E~~LD~lI~~~~q~L~~Lted 182 (377)
...+ ++--.+-.++++++. |..-..++++.|..|.++|....+.
T Consensus 98 ~~d~-~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 147 (181)
T 3uo3_A 98 TSDP-QLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYND 147 (181)
T ss_dssp HTCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0111 222233344455543 3444455666677777777766654
No 225
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=30.19 E-value=27 Score=22.65 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=19.9
Q ss_pred ccHHHHHHHhccceehhhhhHH
Q 017095 94 LDLNKAAETLEVQKRRIYDITN 115 (377)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItN 115 (377)
+.+.++|+.|+|.+.-||-+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999998764
No 226
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=30.14 E-value=29 Score=32.79 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 83 i~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
.+.|.+. .+.+++.++|+++++..|.++-+..+|.++|++++..
T Consensus 34 fd~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~ 77 (353)
T 4a6d_A 34 FDLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVET 77 (353)
T ss_dssp HHHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 4444443 4689999999999999999999999999999998653
No 227
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=30.02 E-value=13 Score=32.61 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+.+...++|+.|++.+=-+.-+++-||.-|+|+|..
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 458999999999999999999999999999999873
No 228
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=29.94 E-value=40 Score=29.83 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=34.8
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 69 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 69 ~R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
.|...+-..|..--++++.+..-.-+.+.++|+++||.+.-||
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY 67 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLY 67 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHH
Confidence 4445566778888999997776678999999999999999999
No 229
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=29.83 E-value=32 Score=27.56 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=33.6
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
|.+..-..|....++++....-..+.+.++|++.||.|.-||
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 48 (196)
T 3col_A 7 KDMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVY 48 (196)
T ss_dssp ---CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHH
Confidence 344455677888889998877778999999999999999998
No 230
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=29.74 E-value=38 Score=31.11 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 83 i~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
+..+.....+.+...++|+.|++.+--+-=+++=||.-|+|+|.
T Consensus 40 L~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 40 LTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 33444444567899999999999999999999999999999987
No 231
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.64 E-value=47 Score=26.48 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
=..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 8 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 45 (191)
T 1sgm_A 8 REKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYH 45 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHH
Confidence 35677888899988777889999999999999999883
No 232
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=29.43 E-value=51 Score=29.77 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=40.7
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 78 LTkkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
+...+.+.+.. .++..+ ...++|++|+|+|=-+-..++.|+.-|+|.+..
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 34445555544 467788 899999999999999999999999999999763
No 233
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=29.43 E-value=31 Score=32.69 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=37.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhcc--cee---hhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDLNKAAETLEV--QKR---RIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~V--qKR---RIYDItNVLEgIGLIeK~ 126 (377)
..+.+..+.++.+.+.++|+++++ ..| .++-|..+|-++|++++.
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 445555555578999999999998 777 899999999999999986
No 234
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=29.33 E-value=45 Score=30.00 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=37.8
Q ss_pred HHHHHHHH-HHhhCCCCcccHHHHHHHhccceehhhhhHHH-hhhccchhhcc
Q 017095 77 LLTKKFIN-LIKHAEDGILDLNKAAETLEVQKRRIYDITNV-LEGIGLIEKKL 127 (377)
Q Consensus 77 lLTkkFi~-ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV-LEgIGLIeK~s 127 (377)
..-++++. +++...+..+.+..+|+.||+.+..+|..+.- |...|+|++..
T Consensus 247 ~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~ 299 (324)
T 1hqc_A 247 KRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTP 299 (324)
T ss_dssp HHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCC
Confidence 34445555 44565667789999999999999999995544 67788887654
No 235
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=29.32 E-value=28 Score=28.23 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=35.6
Q ss_pred CCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 89 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 89 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
++++.+.+.++|+.+++.+=++-=.+..||.-|||++.
T Consensus 32 ~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 32 NGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp TTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 48888999999999999999999999999999999975
No 236
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=29.29 E-value=46 Score=27.24 Aligned_cols=37 Identities=14% Similarity=0.374 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
=..|...+++++.+..-..+.+.++|++.||.|.-||
T Consensus 15 r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 15 QKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 3567788899998877778999999999999999998
No 237
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.19 E-value=1.1e+02 Score=24.62 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017095 153 ADIDNLSMEELRVDEQTRELRERLRELIEN 182 (377)
Q Consensus 153 ~El~~L~~~E~~LD~lI~~~~q~L~~Lted 182 (377)
.|++.-..+-+.|.+.|...++.|++|..+
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444445555566666677777777554
No 238
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=29.17 E-value=49 Score=26.36 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
.+..=..|....++++.+..-..+.+.++|++.||.|.-||
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y 48 (191)
T 3on4_A 8 ISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIH 48 (191)
T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhh
Confidence 34455678888889988877778999999999999999998
No 239
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.86 E-value=96 Score=22.75 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 147 DASILQADIDNLSMEELRVDEQTRELRERLREL 179 (377)
Q Consensus 147 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~L 179 (377)
.+..|+.+++.|..+-..|...|..+++++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888887777665
No 240
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=28.86 E-value=21 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=34.2
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
|.+..-..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 20 r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 62 (214)
T 2zb9_A 20 PAEEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 3333445677778888888777789999999999999999984
No 241
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.84 E-value=95 Score=24.99 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017095 149 SILQADIDNLSMEELRVDEQTRELRERLRELIENE 183 (377)
Q Consensus 149 ~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~ 183 (377)
..|.+|+..|..++..||..|..++...+.|-..+
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 45567788888899999999999988888876543
No 242
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=28.81 E-value=49 Score=29.82 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=40.9
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 78 LTkkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
+...+.+.+.. .++..+ ...++|++++|+|=-+-..++.|+.-|+|++...
T Consensus 14 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 14 IASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp HHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 55566666654 567778 8999999999999999999999999999998743
No 243
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=28.52 E-value=41 Score=26.99 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=34.6
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
|....=..|....++++.+..-..+.+.++|++.||.|.-||
T Consensus 5 r~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 46 (183)
T 1zk8_A 5 RIGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLY 46 (183)
T ss_dssp -CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHH
Confidence 334445678888999998877778999999999999999998
No 244
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.28 E-value=29 Score=33.92 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccHHHHhhccCCCCc--eEEEEeCCCCceEEe
Q 017095 143 EVDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQ--TLIAIKAPQGTTLEV 220 (377)
Q Consensus 143 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~~n~~~aYVT~~DI~~l~~f~~q--TvIAIKAP~gT~LEV 220 (377)
.+.++..+|.+|+..|+..-...+..|+.++..|..+...-...+-.....+.....+|+... .+.. .++....++
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~dC~~i 79 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTTANKISP--ITGKDCQQV 79 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEHHHHTBCS--CCCSSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCCcCHHHH
Q ss_pred cCCCcccCCCCCcEEEEEecCCCceEEE
Q 017095 221 PDPDEAVDYPQRRYRIILRSTMGPIDVY 248 (377)
Q Consensus 221 PdP~e~~~~~~~~yqI~LkS~~GPIdVy 248 (377)
........ .-|.|+......|+.||
T Consensus 80 ~~~g~~~S---GvY~I~p~~~~~pf~V~ 104 (323)
T 1lwu_C 80 VDNGGKDS---GLYYIKPLKAKQPFLVF 104 (323)
T ss_dssp HTTTCCSS---EEEEECCTTCSSCEEEE
T ss_pred HhcCCCCC---eEEEEecCCCCCcEEEE
No 245
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.26 E-value=82 Score=26.53 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 147 DASILQADIDNLSMEELRVDEQTRELRERLR 177 (377)
Q Consensus 147 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~ 177 (377)
++..|.++++.|+...+.|+..|..+++.+.
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666665555443
No 246
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=28.24 E-value=44 Score=28.99 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=34.5
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEE
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (377)
.+...++|..||+.|..+.=+.+-|+.-|+|++.. +.|.-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~-~~i~i 216 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-NKIIV 216 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC-CEEEE
Confidence 46889999999999999999999999999999874 44443
No 247
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=28.21 E-value=44 Score=27.35 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 76 glLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
..|....++++.+..-.-+.+.++|++.||.|.-||=
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 4577788999988887889999999999999999983
No 248
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.20 E-value=83 Score=24.56 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 143 EVDADASILQADIDNLSMEELRVDEQTRELRERLREL 179 (377)
Q Consensus 143 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~L 179 (377)
.+..++..+..+++.|..+...+...+..++..|+.+
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999999999998865
No 249
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=28.05 E-value=1.2e+02 Score=20.22 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 148 ASILQADIDNLSMEELRVDEQTRELR 173 (377)
Q Consensus 148 ~~~Lk~El~~L~~~E~~LD~lI~~~~ 173 (377)
+..|+.|+..|..+-..|.-.|..+.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777776666665555443
No 250
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=28.02 E-value=1.7e+02 Score=25.96 Aligned_cols=20 Identities=10% Similarity=0.343 Sum_probs=16.9
Q ss_pred eEEEEeCCCCceEEecCCCc
Q 017095 206 TLIAIKAPQGTTLEVPDPDE 225 (377)
Q Consensus 206 TvIAIKAP~gT~LEVPdP~e 225 (377)
.+|.|+.-+.|+|++-..++
T Consensus 65 PFIlV~T~k~t~I~ceISeD 84 (155)
T 2aze_A 65 PFIIVNTSKKTVIDCSISND 84 (155)
T ss_dssp SCEEEEEESSCCEEEEECTT
T ss_pred CEEEEEcCCCCEEEEEEecC
Confidence 36999999999999987664
No 251
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.98 E-value=86 Score=24.03 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 147 DASILQADIDNLSMEELRVDEQTRELRERLREL 179 (377)
Q Consensus 147 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~L 179 (377)
.+..|+.++..|..+-..|.+.+..++++|..|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777777777777777777655
No 252
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=27.83 E-value=26 Score=29.84 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 72 d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
+..-..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 42 ~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~ 82 (229)
T 3bni_A 42 AERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHH
Confidence 34445677888999988777789999999999999999984
No 253
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.61 E-value=65 Score=31.90 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hcccccccccHHHHh
Q 017095 147 DASILQADIDNLSMEELRVDEQTRELRERLRELIEN----ENNRKWLFVTEEDIK 197 (377)
Q Consensus 147 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted----~~n~~~aYVT~~DI~ 197 (377)
++..|+.|++.|+++-.+|++.|+.++.+++++.+. +.-++-+|-.-+|++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677777777777777777777777777665442 222344444455554
No 254
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=27.46 E-value=46 Score=28.20 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 76 glLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 33 ~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 69 (230)
T 2iai_A 33 ETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYH 69 (230)
T ss_dssp SCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHH
Confidence 3477788888888777789999999999999999983
No 255
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=27.40 E-value=21 Score=28.45 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 73 SSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 73 ~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
..-..|..-+++++.+..-..+.+.++|++.||.|.-||
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 50 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFY 50 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHH
Confidence 344567777888988877778999999999999999998
No 256
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=27.35 E-value=49 Score=27.80 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=33.6
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEE
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (377)
.+...++|..||+.|..+.-+.+-|+.-|+|++. ++.|.
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 216 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD-GREIS 216 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES-SSCEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 3566899999999999999999999999999886 44443
No 257
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=27.15 E-value=10 Score=30.88 Aligned_cols=44 Identities=7% Similarity=0.086 Sum_probs=34.2
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 69 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 69 ~R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.|.+..=..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 16 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 59 (203)
T 3mnl_A 16 EAQRERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYR 59 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHH
Confidence 33444445677778888877655679999999999999999984
No 258
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=27.04 E-value=34 Score=33.18 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
.++++... ..+.+..+++.++|+++-+.-.++-|+..|+|++.++
T Consensus 302 ll~~l~~~--p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~ 346 (373)
T 2qc0_A 302 LVQVIFEQ--PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS 346 (373)
T ss_dssp HHHHHHHC--SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--
T ss_pred HHHHHHhC--CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 34444333 3578889999999999999999999999999998753
No 259
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=26.95 E-value=60 Score=27.47 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=32.7
Q ss_pred ccHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
+...++|..||+.|..+.=+.+-|+.-|+|++..+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 678999999999999999999999999999887443
No 260
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.83 E-value=1e+02 Score=25.21 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017095 149 SILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (377)
Q Consensus 149 ~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lte 181 (377)
.-|+..++.|...-+.|.+.+..+++++..+.+
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666665543
No 261
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=26.69 E-value=51 Score=26.46 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
.+..=..|....++++....-..+.+.++|++.||.|.-||
T Consensus 9 ~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 9 AVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp --CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHH
Confidence 34445678888999998877778999999999999999999
No 262
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=26.47 E-value=52 Score=28.77 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhc-cceehhhhhHHHhhhccchhhccC
Q 017095 82 FINLIKHAEDGILDLNKAAETLE-VQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 82 Fi~ll~~ap~g~ldLn~aA~~L~-VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
.+.++...+.+...+.++++.++ +.+=-||--++.|+..|||++...
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~ 81 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPV 81 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeec
Confidence 34456677888899999999999 999999999999999999998743
No 263
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=26.10 E-value=60 Score=25.94 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 73 SSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 73 ~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
..=..|....++++.+..-..+.+.++|++.||.|.-||
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y 50 (199)
T 3on2_A 12 SLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPS 50 (199)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CC
T ss_pred HHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHH
Confidence 333567788888888777778999999999999998888
No 264
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=25.96 E-value=54 Score=26.97 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 76 glLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
..+...+++++....-..+.+.++|++.||.|.-||
T Consensus 15 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 50 (189)
T 3vp5_A 15 NRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFY 50 (189)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHH
Confidence 467778899998887778999999999999999998
No 265
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=25.54 E-value=60 Score=30.15 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccc
Q 017095 145 DADASILQADIDNLSMEELRVDEQTRELRERLRELIENENN-RKWLFV 191 (377)
Q Consensus 145 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~~n-~~~aYV 191 (377)
.++.++|++|+..|+.+..+++++..+ .++|+.|.+-... ..|-|+
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~~~l~~E-n~rLr~lL~~~~~~~~~~~i 71 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEVADLKKE-NKDLKESLDITDSIRDYDPL 71 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCCSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCccccccCceE
Confidence 345668889999998888888887654 4567777665443 344444
No 266
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=25.09 E-value=1.1e+02 Score=24.22 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=23.5
Q ss_pred ccHHHHHHHhccceehhhhhHHHhhhccchhh--ccCCeEEE
Q 017095 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEK--KLKNRIRW 133 (377)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK--~sKN~i~W 133 (377)
+.+.++|+.+||..+-|-=. |..|++.- ...|.+++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~~~~~g~R~ 40 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHY----DNIELLNPSALTDAGYRL 40 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHH----HHTTSSCCSEECTTCCEE
T ss_pred ccHHHHHHHHCcCHHHHHHH----HHCCCCCCCeECCCCCee
Confidence 67889999999988866322 44677643 23455554
No 267
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=25.08 E-value=21 Score=29.99 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=33.9
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEE
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (377)
.+...++|..||+.|..+.=+.+-|+.-|+|+.. +++|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5678999999999999999999999999999865 45443
No 268
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=24.91 E-value=80 Score=27.69 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=35.3
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
|...+-..|....++++....-.-+.+..+|+++||.|.-||=
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 55 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYW 55 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGG
T ss_pred CCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHH
Confidence 3445567788999999988877889999999999999999994
No 269
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=24.87 E-value=48 Score=27.06 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 74 SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
.=..|....++++.+..-.-+.+.++|++.||.|.-||
T Consensus 10 ~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 47 (193)
T 2dg8_A 10 RRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMT 47 (193)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhh
Confidence 34567888999998877778999999999999999999
No 270
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.80 E-value=72 Score=30.00 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017095 141 PGEVDADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 182 (377)
Q Consensus 141 ~~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted 182 (377)
..++++.+..|...++.+.+.|+.....|+...++|++|-+.
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999999999999999999999999999765
No 271
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=24.60 E-value=38 Score=27.67 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=34.8
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
|.+..-..|....++++....-..+.+.++|++.||.|.-||=
T Consensus 11 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 11 KSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHH
Confidence 4444556777888888888777789999999999999999983
No 272
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=24.47 E-value=25 Score=31.18 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=34.5
Q ss_pred CCCcccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
..+.+.+.+||++|++.+=-+--.+.-||..||++|..
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34568899999999999999999999999999999973
No 273
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.32 E-value=1.5e+02 Score=23.03 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=32.0
Q ss_pred CCCcHHHHHHHHHHHH-hhCCCCcc----------cHHHHHHHhcc-ceehhhhh
Q 017095 71 YDSSLGLLTKKFINLI-KHAEDGIL----------DLNKAAETLEV-QKRRIYDI 113 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll-~~ap~g~l----------dLn~aA~~L~V-qKRRIYDI 113 (377)
.+.+...|-+.|..+. +-+||..- .|++|=+.|.- .+|+.||-
T Consensus 27 ~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 81 (99)
T 2yua_A 27 STATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDR 81 (99)
T ss_dssp TTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4568888999999987 44676543 36777777765 88999995
No 274
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=24.27 E-value=70 Score=28.67 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccC
Q 017095 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 78 LTkkFi~ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
+...+.+.+.. .++..+ ...++|++++|+|=-+-..++.|+.-|+|.+...
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g 64 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 33444444433 467788 8999999999999999999999999999998643
No 275
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=24.11 E-value=24 Score=28.55 Aligned_cols=44 Identities=7% Similarity=-0.042 Sum_probs=33.3
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 69 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 69 ~R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.|.+..=..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 10 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 53 (191)
T 4aci_A 10 DKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFH 53 (191)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHH
Confidence 34455556778888888877655679999999999999999994
No 276
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.92 E-value=1.7e+02 Score=30.81 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=37.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----------ccccccc----cHHHHhh----------
Q 017095 143 EVDADASILQADIDNLSMEELRVDEQTRELRERLRELIENEN----------NRKWLFV----TEEDIKN---------- 198 (377)
Q Consensus 143 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~~----------n~~~aYV----T~~DI~~---------- 198 (377)
++++++..||++|..-....+.|...|+++..+|+.|--|-+ .+.++|- .|+++..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
Confidence 566777788888876666677777777777777766654422 1223332 3444332
Q ss_pred ccCCCCceEEEEeCCCCceEEecC
Q 017095 199 LHCFQNQTLIAIKAPQGTTLEVPD 222 (377)
Q Consensus 199 l~~f~~qTvIAIKAP~gT~LEVPd 222 (377)
+|...-|+|-+||.-|=.-+ ||.
T Consensus 194 ~p~~~~q~Lp~lKmrP~kD~-Vp~ 216 (562)
T 3ghg_A 194 LPSRDRQHLPLIKMKPVPDL-VPG 216 (562)
T ss_dssp CCSCCCC-----------------
T ss_pred CCccccccchhccccccccc-Cch
Confidence 24556788888888765555 654
No 277
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=23.87 E-value=53 Score=28.46 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhc--------------cceehhhhhHHHhhhccchhhccC
Q 017095 80 KKFINLIKHAEDGILDLNKAAETLE--------------VQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 80 kkFi~ll~~ap~g~ldLn~aA~~L~--------------VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
..+.+++...+.|. .++|+.+| |+|=-|-.++..||..|||++..+
T Consensus 57 ~~lr~~i~~g~~G~---~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~ 116 (150)
T 2v7f_A 57 SILRRVYLDGPVGI---ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 116 (150)
T ss_dssp HHHHHHHHHCSBCH---HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHhCCCCH---HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC
Confidence 33444454445444 99999999 777779999999999999998743
No 278
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=23.84 E-value=50 Score=25.82 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=37.0
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhcc----ceehhhhhHHHhhhccchhhcc
Q 017095 81 KFINLIKHAEDGILDLNKAAETLEV----QKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L~V----qKRRIYDItNVLEgIGLIeK~s 127 (377)
.++.++-.. +.+...++|+.|++ .+--++-+++-||.-|+|+|..
T Consensus 14 ~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 14 DVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 455556553 45899999999985 6888999999999999999874
No 279
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.82 E-value=68 Score=30.50 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017095 145 DADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 182 (377)
Q Consensus 145 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted 182 (377)
+.++..|+.++..|..+..+|-+.++.++++|..|.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999998888888888888888654
No 280
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.59 E-value=44 Score=30.75 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=38.7
Q ss_pred CCcccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeEEE
Q 017095 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (377)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (377)
.+..+..++|+.+++..+-+-..++-|...|+|++...+.|.-
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVVL 218 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEEe
Confidence 5788999999999999999999999999999999887776653
No 281
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.51 E-value=62 Score=26.94 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=33.4
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhccCCeE
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (377)
.+...++|..||+.|..+.=+.+-|+.-|+|++. ++.|
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i 200 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG-PGTV 200 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEE
Confidence 4678999999999999999999999999999875 4444
No 282
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=23.27 E-value=66 Score=22.29 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHhhCCCCcccHHHHHHHh-----ccceehhhhhHHHhhhccchhhc
Q 017095 84 NLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 84 ~ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.++.. ++.+...++++.| +|.++-||-.++ .+|++ |.
T Consensus 12 ~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 12 EIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EE
T ss_pred HHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EE
Confidence 34444 4579999999999 999999997777 56777 54
No 283
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=23.15 E-value=59 Score=27.70 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=29.5
Q ss_pred CcccHHHHHHHhccceehhhhhHHHhhhccchh
Q 017095 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIE 124 (377)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 124 (377)
+.-+|..+.+.-|..||-|.|.+..|..+|+.-
T Consensus 32 ~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~ 64 (117)
T 3ke2_A 32 ARHNLLSLGKLTGMPRRTLQDAIASFADIGIEV 64 (117)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEE
Confidence 444999999999999999999999999999854
No 284
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=23.03 E-value=51 Score=26.65 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
.+..-..|....++++.+..-.-+.+.++|++.||.|.-||
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVY 54 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSST
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhh
Confidence 34444578888899998877778999999999999999988
No 285
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=22.97 E-value=60 Score=28.83 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=31.3
Q ss_pred ccHHHHHHHhccceehhhhhHHHhhhccchhhcc
Q 017095 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (377)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (377)
....++|+.|++.+--+..+++-||.-|||++..
T Consensus 25 ~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 25 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 3459999999999999999999999999999975
No 286
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=22.96 E-value=55 Score=26.25 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 77 lLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHH
Confidence 466778888887777789999999999999999984
No 287
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=22.92 E-value=2.1e+02 Score=24.84 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHh-hCCCCc---------------ccHHHHHHHhcc-ceehhhhhHHHhhhccchhhccCCeEEEeccC
Q 017095 75 LGLLTKKFINLIK-HAEDGI---------------LDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGLD 137 (377)
Q Consensus 75 LglLTkkFi~ll~-~ap~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~ 137 (377)
...|-+.|..+.. -+||.. .-||+|=+.|.= .+|+.||.. |.|+.+-.-. + .
T Consensus 20 ~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~--~-------~ 88 (174)
T 3hho_A 20 GSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS--LQGIEMNAEQ--Q-------T 88 (174)
T ss_dssp HHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--HTTCCCC-------------C
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH--ccCCCccccc--C-------C
Confidence 6788888988864 466542 236666667765 899999974 4566553321 0 0
Q ss_pred CCCCCcchhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 017095 138 NSIPGEVDADASILQADIDN----------LSMEELRVDEQTRELRERLRELIEN 182 (377)
Q Consensus 138 ~s~~~~~~~~~~~Lk~El~~----------L~~~E~~LD~lI~~~~q~L~~Lted 182 (377)
...+ ++--.+-.+.++++. |..-...+++.++.+.++|....++
T Consensus 89 ~~d~-~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 142 (174)
T 3hho_A 89 LQDP-MFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQ 142 (174)
T ss_dssp CCCH-HHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 222223344444443 4445556667777777777776654
No 288
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=22.91 E-value=31 Score=29.79 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=34.5
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
|....=..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 43 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~ 85 (245)
T 3aqt_A 43 KREQTRARLITSARTLMAERGVDNVGIAEITEGANIGTGTFYN 85 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHH
Confidence 3344445677778899988766789999999999999999983
No 289
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.81 E-value=18 Score=30.13 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
-..|...+++++.+..-.-+.+.++|++.||.|.-||
T Consensus 32 r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 68 (212)
T 2np3_A 32 REAILTAARVCFAERGFDATSLRRIAETAGVDQSLVH 68 (212)
T ss_dssp ---CHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHH
Confidence 3456778888888877778999999999999999888
No 290
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.79 E-value=1.6e+02 Score=23.07 Aligned_cols=8 Identities=25% Similarity=0.077 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 017095 148 ASILQADI 155 (377)
Q Consensus 148 ~~~Lk~El 155 (377)
+..||..+
T Consensus 21 i~eLq~~L 28 (72)
T 3nmd_A 21 LRDLQYAL 28 (72)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444333
No 291
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.77 E-value=55 Score=27.14 Aligned_cols=41 Identities=5% Similarity=-0.016 Sum_probs=33.2
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
|.+..=..|....++++.+.. .-+.+.++|++.||.|.-||
T Consensus 17 ~~~~~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY 57 (215)
T 2hku_A 17 SGRQTRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVT 57 (215)
T ss_dssp ---CHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHH
Confidence 334444667788889888888 99999999999999999999
No 292
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.77 E-value=60 Score=20.90 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017095 157 NLSMEELRVDEQTRELRERLREL 179 (377)
Q Consensus 157 ~L~~~E~~LD~lI~~~~q~L~~L 179 (377)
.|+-+.+.|++.|..+.|.+..|
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 44445555556666665555444
No 293
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=22.68 E-value=38 Score=27.46 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=34.1
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.+..=..|....++++.+..-..+.+.++|++.||.|.-||=
T Consensus 10 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 10 NKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHH
Confidence 334445677788889888777789999999999999999883
No 294
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=22.58 E-value=41 Score=27.16 Aligned_cols=41 Identities=10% Similarity=0.170 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 72 d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
+..-..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYR 56 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHH
Confidence 34456677888888888777789999999999999999984
No 295
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.56 E-value=1e+02 Score=23.05 Aligned_cols=30 Identities=10% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 147 DASILQADIDNLSMEELRVDEQTRELRERL 176 (377)
Q Consensus 147 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L 176 (377)
.+..|+.+++.|..+-..|...|..+++++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777766666665544
No 296
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=22.45 E-value=66 Score=25.42 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=32.7
Q ss_pred HHHHHhhCCCCcccH-HHHHHHhccceehhhhhHHHhhhccchhhc
Q 017095 82 FINLIKHAEDGILDL-NKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (377)
Q Consensus 82 Fi~ll~~ap~g~ldL-n~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (377)
.+.++...|..-.+| ..+++.+++..--||-++.-||.-|+|++.
T Consensus 14 IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~ 59 (108)
T 3l7w_A 14 ILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTY 59 (108)
T ss_dssp HHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEE
Confidence 444555555444444 334455789999999999999999999986
No 297
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=22.43 E-value=56 Score=25.91 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 77 lLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFY 43 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHH
Confidence 466677888877666689999999999999999994
No 298
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=22.28 E-value=44 Score=30.35 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=36.3
Q ss_pred hCCCCcc-cHHHHHHHhccceehhhhhHHHhhhccchhhccCC
Q 017095 88 HAEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (377)
Q Consensus 88 ~ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (377)
-.++..+ .-.++|++++|+|=-+-..++.|+.-|+|.+.++.
T Consensus 30 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~g~G 72 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRT 72 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCE
Confidence 3466677 89999999999999999999999999999994444
No 299
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=22.18 E-value=46 Score=28.68 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 73 SSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 73 ~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
..-..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 62 (231)
T 2zcx_A 23 QREEAILDAARELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHH
Confidence 3345577778888877766789999999999999999984
No 300
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.15 E-value=69 Score=26.64 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=39.0
Q ss_pred HHHHHHhhCCCCcccHHHHHHHh-----ccceehhhhhHHHhhhccchhhccC
Q 017095 81 KFINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKLK 128 (377)
Q Consensus 81 kFi~ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~sK 128 (377)
..++++..+ ++.++..++.+.| ++.+=-+|-.++.|+..|||.|..-
T Consensus 26 ~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 26 AILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 356666654 5678999999999 7888999999999999999998753
No 301
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=21.87 E-value=55 Score=27.59 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=34.6
Q ss_pred cccHHHHHHHhccceehhhhhHHHhhhccchhhc-cCCeEEE
Q 017095 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK-LKNRIRW 133 (377)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-sKN~i~W 133 (377)
.+...++|..||+.|..+.=+.+-|+.-|+|++. .+ .|.-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~-~i~i 207 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR-TLLL 207 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSS-EEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCC-EEEE
Confidence 4678999999999999999999999999999986 44 5543
No 302
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.46 E-value=1e+02 Score=25.15 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 72 d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
+..=..|....++++.+..-.-+.++++|++.||.|.-||-
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 13 ENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp TTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeee
Confidence 33345677788889988777789999999999999999983
No 303
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=21.36 E-value=68 Score=28.35 Aligned_cols=43 Identities=9% Similarity=0.160 Sum_probs=35.5
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 70 R~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
|...+-..|....++++....-.-+.+..+|+++||.+.-||=
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~ 45 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYA 45 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHH
Confidence 3344556788889999988766789999999999999999994
No 304
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=21.34 E-value=50 Score=27.03 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 76 glLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
..+....++++.+..-..+.++++|++.||.|.-||
T Consensus 15 ~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY 50 (192)
T 2fq4_A 15 KAILSASYELLLESGFKAVTVDKIAERAKVSKATIY 50 (192)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHH
Confidence 456677888888877778999999999999999999
No 305
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=21.10 E-value=54 Score=26.08 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 76 glLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 11 DDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 4566778888888777789999999999999999983
No 306
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.10 E-value=1.5e+02 Score=22.01 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017095 146 ADASILQADIDNLSMEELRVDEQTRELRERL 176 (377)
Q Consensus 146 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L 176 (377)
.....|+.+-..|..+-..|...+.++.+-|
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 307
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=21.00 E-value=48 Score=26.70 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 76 glLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
..|...+++++.+..-..+.+.++|++.||.|.-||-
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (203)
T 3f1b_A 17 QQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHH
Confidence 4577788899988777789999999999999999984
No 308
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.68 E-value=1.1e+02 Score=30.45 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017095 149 SILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (377)
Q Consensus 149 ~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lte 181 (377)
..|++|+..|.++..+|++.|+.++..++.+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777766666544
No 309
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=20.50 E-value=53 Score=27.92 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=34.2
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.+..-..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 42 ~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~ 83 (236)
T 3q0w_A 42 GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 83 (236)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHH
Confidence 333445677888889988777789999999999999999984
No 310
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=20.45 E-value=3.5e+02 Score=24.28 Aligned_cols=97 Identities=10% Similarity=0.154 Sum_probs=59.4
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhh-hccchhhccCCeEEEeccCCCCCCcchhHHH
Q 017095 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLE-GIGLIEKKLKNRIRWKGLDNSIPGEVDADAS 149 (377)
Q Consensus 71 ~d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLE-gIGLIeK~sKN~i~W~G~~~s~~~~~~~~~~ 149 (377)
++.||..+-.+...++.. | +.-.++|++|||+|-.+--.+..-. -.|+|+=- +..+ +.....+.
T Consensus 6 ke~sl~eiG~ria~~y~~---g-~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lf--------p~~~---~ls~p~~~ 70 (192)
T 1zx4_A 6 LQHSIREIGLRLMRMKND---G-MSQKDIAAKEGLSQAKVTRALQAASAPEELVALF--------PVQS---ELTFSDYK 70 (192)
T ss_dssp CSSCHHHHHHHHHHHHHT---T-CCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTC--------SCGG---GCCHHHHH
T ss_pred ccccHHHHHHHHHHHHHc---C-CCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHc--------CCcc---cCccchHH
Confidence 467899999999888532 2 8999999999998876655432211 11111110 1100 01112455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017095 150 ILQADIDNLSMEELRVDEQTRELRERLRELIEN 182 (377)
Q Consensus 150 ~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted 182 (377)
.|..=-+.|..+...+|++|..+.+++..+.++
T Consensus 71 ~L~k~~~~l~~~~~~l~eLi~~~~~~i~~~~~~ 103 (192)
T 1zx4_A 71 TLCAVGDEMGNKNLEFDQLIQNISPEINDILSI 103 (192)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhhc
Confidence 555444555555667899999999998887543
No 311
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=20.44 E-value=72 Score=26.04 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 72 d~SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
+..=..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 12 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 52 (217)
T 3nrg_A 12 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 52 (217)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 33445677888889988777789999999999999999984
No 312
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=20.34 E-value=49 Score=28.10 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhh
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (377)
=..|....++++.+..-..+.+.++|++.||.|.-||
T Consensus 15 r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y 51 (231)
T 2qib_A 15 RQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVY 51 (231)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHH
Confidence 3567788899998877778999999999999999999
No 313
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=20.27 E-value=11 Score=31.95 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhhhHHHhhhccchhh
Q 017095 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (377)
Q Consensus 75 LglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (377)
+..+-++.+..++ +++.+...++|++|||+|--+...+..|+.-|+|++
T Consensus 11 ~d~l~~~Il~~l~--~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQ--KDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHH--HCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHH--hCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3345556666443 466789999999999999999999999999999986
No 314
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=20.26 E-value=64 Score=26.45 Aligned_cols=39 Identities=13% Similarity=-0.029 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceehhhh
Q 017095 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (377)
Q Consensus 74 SLglLTkkFi~ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (377)
.-..|....++++....-.-+.+.++|++.||.|.-||-
T Consensus 18 ~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 56 (218)
T 3gzi_A 18 NRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRY 56 (218)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHH
Confidence 345567778888887777789999999999999999984
No 315
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=20.05 E-value=4.7e+02 Score=25.32 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=23.5
Q ss_pred cccHHHHhhccCCCCceEEEEeCCC-CceEEecCCCcccCCCCCcEEEEEecCCCceEE
Q 017095 190 FVTEEDIKNLHCFQNQTLIAIKAPQ-GTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDV 247 (377)
Q Consensus 190 YVT~~DI~~l~~f~~qTvIAIKAP~-gT~LEVPdP~e~~~~~~~~yqI~LkS~~GPIdV 247 (377)
+-+..||... .....-|.-|+-+. ...++|-= +|+....-+.|+.|=..|.+|.
T Consensus 63 ~~sC~~i~~~-g~~~SGvY~I~p~~~~~pf~VyC---Dm~t~ggGWtviqrR~dGsv~F 117 (319)
T 1fzc_C 63 GKDCQDIANK-GAKQSGLYFIKPLKANQQFLVYC---EIDGSGNGWTVFQKRLDGSVDF 117 (319)
T ss_dssp BSSHHHHHTT-TCCCCEEEEECCTTCSSCEEEEE---EECTTSCEEEEEEEESSSCSCC
T ss_pred CcCHHHHHhc-CCCCCeEEEEecCCCCCcEEEEE---eeecCCCCEEEEEEecCCCcce
Confidence 4566666542 12344556666332 22344431 0111112455555555565553
Done!