BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017096
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 216 LETPKYQILK----RTANYEVRRYSPFIVVETNGDKL----SGSTGFNDVAGYIFGKNSK 267
+ETP ++ + + +YE+R Y P V T+ + + + TGF + YI GKN K
Sbjct: 23 VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEK 82
Query: 268 TEKIPMTTPV 277
KI MT PV
Sbjct: 83 EMKIKMTAPV 92
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 216 LETPKYQILK----RTANYEVRRYSPFIVVETNGDKL----SGSTGFNDVAGYIFGKNSK 267
+ETP ++ + + +YE+R Y P V T+ + + + TGF + YI GKN K
Sbjct: 42 VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEK 101
Query: 268 TEKIPMTTPV 277
KI MT PV
Sbjct: 102 EMKIKMTAPV 111
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 44 AVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLY----DDLPHLFDDQGIDRTAYDE 99
A KTNQ L+WA L VD + +E + +D HL +D+ ++
Sbjct: 95 AGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEK 154
Query: 100 QVKF-----RDPITKHDTISGYLFNISMLKMV-FRP 129
F D +T+ + I G L N +L+++ F P
Sbjct: 155 IWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEP 190
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 44 AVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLY----DDLPHLFDDQGIDRTAYDE 99
A KTNQ L+WA L VD + +E + +D HL +D+ ++
Sbjct: 94 AGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEK 153
Query: 100 QVKF-----RDPITKHDTISGYLFNISMLKMV-FRP 129
F D +T+ + I G L N +L+++ F P
Sbjct: 154 IWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEP 189
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 44 AVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLY----DDLPHLFDDQGIDRTAYDE 99
A KTNQ L+WA L VD + +E + +D HL +D+ ++
Sbjct: 94 AGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEK 153
Query: 100 QVKF-----RDPITKHDTISGYLFNISMLKMV-FRP 129
F D +T+ + I G L N +L+++ F P
Sbjct: 154 IWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEP 189
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 44 AVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLY----DDLPHLFDDQGIDRTAYDE 99
A KTNQ L+WA L VD + +E + +D HL +D+ ++
Sbjct: 94 AGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEK 153
Query: 100 QVKF-----RDPITKHDTISGYLFNISMLKMV-FRP 129
F D +T+ + I G L N +L+++ F P
Sbjct: 154 IWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEP 189
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 44 AVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLY----DDLPHLFDDQGIDRTAYDE 99
A KTNQ L+WA L VD + +E + +D HL +D+ ++
Sbjct: 94 AGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEK 153
Query: 100 QVKF-----RDPITKHDTISGYLFNISMLKMV-FRP 129
F D +T+ + I G L N +L+++ F P
Sbjct: 154 IWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEP 189
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 44 AVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLY----DDLPHLFDDQGIDRTAYDE 99
A KTNQ L+WA L VD + +E + +D HL +D+ ++
Sbjct: 94 AGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEK 153
Query: 100 QVKF-----RDPITKHDTISGYLFNISMLKMV-FRP 129
F D +T+ + I G L N +L+++ F P
Sbjct: 154 IWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEP 189
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 38 FKSRSIAVKTNQNLKWAVRLSLVDQSS--PPQSTVDVEWLVGFLYDDLPHLFDDQGIDRT 95
F R + +K+N++ V S+ Q + PPQ +EW G++ P +DR
Sbjct: 172 FPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP-------LDRE 224
Query: 96 AYDEQV 101
YD+ V
Sbjct: 225 EYDKYV 230
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 38 FKSRSIAVKTNQNLKWAVRLSLVDQSS--PPQSTVDVEWLVGFLYDDLPHLFDDQGIDRT 95
F R + +K+N++ V S+ Q + PPQ +EW G++ P +DR
Sbjct: 23 FPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP-------LDRE 75
Query: 96 AYDEQV 101
YD+ V
Sbjct: 76 EYDKYV 81
>pdb|3U07|A Chain A, Crystal Structure Of The Vpa0106 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr106.
pdb|3U07|B Chain B, Crystal Structure Of The Vpa0106 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr106.
pdb|3U07|C Chain C, Crystal Structure Of The Vpa0106 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr106
Length = 443
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 192 NNDYFSLEGFLDVLKQLRIYKTPDLETPKYQIL 224
NND L G+LDV + I PD + +Y IL
Sbjct: 79 NNDTLHLXGWLDVAAEPVIVSVPDXDEGRYWIL 111
>pdb|1P99|A Chain A, 1.7a Crystal Structure Of Protein Pg110 From
Staphylococcus Aureus
Length = 295
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 256 DVAGYIFGKNSKTEKIPMTTPVFTQAYDNELKKVSIQIVLPQDKDMSRKVEGGIAAVLKF 315
D+A G +K K P P+F + +++ K I IV DKD+ K I
Sbjct: 202 DIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIV----- 256
Query: 316 SGKPTEDIVHEKE--KELHTSLIRDGLRP 342
++ H KE K L ++DG +P
Sbjct: 257 ------ELYHSKEAQKALQED-VKDGEKP 278
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 42 SIAVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLY----DDLPHLFDDQGIDRTAY 97
+ A KTNQ L+WA L VD + +E + +D+ L DD+
Sbjct: 100 TTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVXAIFKXITPEDVKLLPDDENTPEKRA 159
Query: 98 DEQVKF-----RDPITKHDTISGYLFNISMLKMV-FRP 129
++ K+ D +T+ + I G L N +L+++ F P
Sbjct: 160 EKIWKYFGKNDDDKLTEKEFIEGTLANKEILRLIQFEP 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,105,349
Number of Sequences: 62578
Number of extensions: 524363
Number of successful extensions: 1044
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 23
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)