Query 017096
Match_columns 377
No_of_seqs 272 out of 848
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04832 SOUL: SOUL heme-bindi 100.0 5.3E-45 1.1E-49 330.5 12.2 156 215-371 1-176 (176)
2 PF10184 DUF2358: Uncharacteri 99.9 2.6E-26 5.7E-31 194.4 13.8 107 74-183 2-113 (113)
3 TIGR02096 conserved hypothetic 99.3 4.8E-11 1E-15 100.8 11.9 98 92-191 18-123 (129)
4 KOG4457 Uncharacterized conser 99.3 2.4E-11 5.3E-16 108.1 9.6 120 63-184 26-165 (202)
5 PF07366 SnoaL: SnoaL-like pol 99.1 7.7E-10 1.7E-14 93.7 10.8 110 79-191 3-121 (126)
6 cd00781 ketosteroid_isomerase 99.1 5E-10 1.1E-14 93.9 8.5 94 92-191 23-119 (122)
7 PF12680 SnoaL_2: SnoaL-like d 98.9 2.2E-08 4.7E-13 79.4 10.8 86 93-183 16-102 (102)
8 PF07858 LEH: Limonene-1,2-epo 97.9 6.3E-05 1.4E-09 65.1 9.3 113 73-191 4-118 (125)
9 TIGR02960 SigX5 RNA polymerase 97.2 0.003 6.4E-08 62.0 11.4 90 92-191 224-317 (324)
10 PRK08241 RNA polymerase factor 97.1 0.0044 9.6E-08 61.4 10.9 112 70-191 211-327 (339)
11 PRK10016 DNA gyrase inhibitor; 96.0 0.25 5.3E-06 43.5 13.8 135 229-372 2-154 (156)
12 PF06445 GyrI-like: GyrI-like 96.0 0.23 5E-06 41.7 13.2 136 229-371 2-155 (155)
13 cd00531 NTF2_like Nuclear tran 95.5 0.19 4.1E-06 40.1 10.0 107 78-188 3-124 (124)
14 COG4319 Ketosteroid isomerase 95.4 0.19 4.2E-06 44.2 10.3 100 74-175 10-116 (137)
15 PF13474 SnoaL_3: SnoaL-like d 94.5 0.44 9.6E-06 38.7 9.9 79 93-174 20-103 (121)
16 TIGR02246 conserved hypothetic 94.3 0.95 2.1E-05 37.3 11.6 80 74-153 4-90 (128)
17 COG3631 Ketosteroid isomerase- 94.2 0.43 9.2E-06 41.8 9.6 112 75-191 6-125 (133)
18 KOG2546 Abl interactor ABI-1, 94.0 0.0067 1.5E-07 61.8 -2.5 105 68-176 65-176 (483)
19 COG3449 DNA gyrase inhibitor [ 90.8 2.7 5.8E-05 37.8 10.0 132 229-369 2-148 (154)
20 COG4308 LimA Limonene-1,2-epox 90.6 0.98 2.1E-05 38.9 6.7 110 73-191 9-121 (130)
21 PF14534 DUF4440: Domain of un 90.5 1.6 3.5E-05 34.3 7.8 79 93-174 20-99 (107)
22 COG5485 Predicted ester cyclas 87.9 1.7 3.7E-05 37.6 6.3 90 97-191 30-125 (131)
23 PF03284 PHZA_PHZB: Phenazine 87.0 9.8 0.00021 34.0 10.6 96 93-191 38-143 (162)
24 smart00871 AraC_E_bind Bacteri 83.9 23 0.0005 29.3 14.6 120 250-371 26-158 (158)
25 PF13577 SnoaL_4: SnoaL-like d 79.0 17 0.00037 29.6 8.8 80 74-154 7-94 (127)
26 PRK10016 DNA gyrase inhibitor; 76.8 12 0.00027 32.6 7.7 67 303-371 6-72 (156)
27 COG4922 Uncharacterized protei 74.7 26 0.00056 30.2 8.5 72 109-191 42-114 (129)
28 PF02136 NTF2: Nuclear transpo 72.7 11 0.00024 30.8 6.0 77 77-154 4-85 (118)
29 PRK09636 RNA polymerase sigma 66.3 40 0.00086 32.7 9.2 49 92-140 191-249 (293)
30 TIGR03357 VI_zyme type VI secr 56.2 1.2E+02 0.0025 26.0 9.4 92 63-155 14-111 (133)
31 PRK15121 right oriC-binding tr 55.4 29 0.00062 33.6 6.0 67 303-371 217-288 (289)
32 COG4978 Transcriptional regula 46.3 1E+02 0.0022 27.6 7.6 136 230-372 5-153 (153)
33 PF06445 GyrI-like: GyrI-like 42.4 51 0.0011 27.1 4.9 52 303-354 6-59 (155)
34 COG3708 Uncharacterized protei 40.6 98 0.0021 27.8 6.6 67 303-372 89-156 (157)
35 COG3449 DNA gyrase inhibitor [ 39.3 1.5E+02 0.0033 26.7 7.5 66 303-370 6-72 (154)
36 KOG4631 NADH:ubiquinone oxidor 30.1 29 0.00063 28.6 1.3 15 327-341 24-38 (100)
37 PHA00159 endonuclease I 28.1 91 0.002 27.8 4.1 44 329-373 21-69 (148)
38 PF06764 DUF1223: Protein of u 24.9 75 0.0016 29.8 3.3 24 180-203 32-55 (202)
39 cd00780 NTF2 Nuclear transport 24.7 3.9E+02 0.0085 21.9 9.3 59 77-136 8-67 (119)
40 COG5429 Uncharacterized secret 24.4 30 0.00065 33.4 0.5 24 180-203 75-98 (261)
41 smart00871 AraC_E_bind Bacteri 24.3 2.3E+02 0.005 23.2 6.0 51 304-354 6-59 (158)
42 COG4978 Transcriptional regula 22.5 2.6E+02 0.0055 25.0 6.1 51 303-354 8-58 (153)
No 1
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []. It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
Probab=100.00 E-value=5.3e-45 Score=330.47 Aligned_cols=156 Identities=38% Similarity=0.565 Sum_probs=124.0
Q ss_pred CCCCCcEEEEEecCCeEEEEEcCcEEEEeecC----CcchhhHHHHHHhcccCCCCCCCCCCCCcceEEEeecC----CC
Q 017096 215 DLETPKYQILKRTANYEVRRYSPFIVVETNGD----KLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDN----EL 286 (377)
Q Consensus 215 ~~E~P~Y~Vl~~~~~yEiR~Y~~~~wa~t~~~----~~A~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~~~----~~ 286 (377)
+.|||+|+||++.++||||+|++++||+|+.. +.|+..||++|++||+|+|+++++|+||+||++++.+. ..
T Consensus 1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~~ 80 (176)
T PF04832_consen 1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESCE 80 (176)
T ss_dssp --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEETTTTTCE
T ss_pred CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEcCCCcccC
Confidence 57999999999999999999999999999976 35788999999999999999999999999999998522 23
Q ss_pred ceEEEEEEcCCCCc-CC-----------ccccCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccCceEEEEEcCC
Q 017096 287 KKVSIQIVLPQDKD-MS-----------RKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDP 354 (377)
Q Consensus 287 ~~~tmsF~lP~~~~-~~-----------~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~g~~~~~~~~~A~Yd~P 354 (377)
+.++|+|+||++++ .+ +++|+.++||++|+|+++++++.+++++|+++|+++|+...+.+++|+||+|
T Consensus 81 ~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P 160 (176)
T PF04832_consen 81 KEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLKDKGYYYVAGYDPP 160 (176)
T ss_dssp CEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHHCCCEEEEEESSSS
T ss_pred CcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCCcCCCeEEEEcCCC
Confidence 68999999999988 33 5679999999999999999999999999999999999997778999999999
Q ss_pred CCCCCCCceeeEEEEec
Q 017096 355 GQTWSFIMRNEVLIWLE 371 (377)
Q Consensus 355 ~~t~~~~RrNEV~i~v~ 371 (377)
|+++++|||||||+|+
T Consensus 161 -~~~~~~R~NEV~i~v~ 176 (176)
T PF04832_consen 161 -FTPPFNRRNEVWIPVK 176 (176)
T ss_dssp --SSSSSSCEEEEEE--
T ss_pred -CCCccCcceEEEEecC
Confidence 8999999999999986
No 2
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.94 E-value=2.6e-26 Score=194.43 Aligned_cols=107 Identities=33% Similarity=0.634 Sum_probs=98.3
Q ss_pred HHHHHHHhhccccccCCCccccccCCCcEEeCCCCcccChHHHHHH---HHHhhhcc--ccEEEEEEeEEeCCcEEEEEE
Q 017096 74 WLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFN---ISMLKMVF--RPAFQLHWVKQTGPYEITTRW 148 (377)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~~~~~iY~~dv~F~DP~~~~~Gl~~y~~~---~~~L~~~~--~~~f~i~~~~~~~~~~i~~rW 148 (377)
+++++||+||+++| .+.++.+||++||+|+||+++|+|+++|+++ +++++.++ +++++|+++.+.+++.|.+||
T Consensus 2 ~~~~~Lr~D~~~~f-~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW 80 (113)
T PF10184_consen 2 DVIRTLREDLPRFF-TGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARW 80 (113)
T ss_pred hHHHHHHHHHHHHh-cCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEE
Confidence 58999999999999 4678999999999999999999999999999 55556633 799999999998866999999
Q ss_pred EEEEEecCCCCCCcEEEEEEeEEEEeCCCCcEEEE
Q 017096 149 TMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSH 183 (377)
Q Consensus 149 ~m~~~~~~Lpw~~~i~v~G~S~l~fn~~~GkI~~H 183 (377)
+|++.+ ++||+|.+.++|+|+|++|++ |+|++|
T Consensus 81 ~~~g~~-~l~w~p~~~~~G~S~~~ln~~-g~I~~H 113 (113)
T PF10184_consen 81 RLRGVP-RLPWRPRISFDGTSTYTLNSD-GLIYRH 113 (113)
T ss_pred EEEEEe-CCCcCCcEEEEEEEEEEECCC-CcEEeC
Confidence 999987 899999999999999999999 899999
No 3
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.28 E-value=4.8e-11 Score=100.77 Aligned_cols=98 Identities=9% Similarity=0.088 Sum_probs=81.3
Q ss_pred ccccccCCCcEEeCCCC--cccChHHHHHHHHHh-hhccccEEEEEEeEEeCCcEEEEEEEEEEEecC----C-CCCCcE
Q 017096 92 IDRTAYDEQVKFRDPIT--KHDTISGYLFNISML-KMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMP----L-PWKPEL 163 (377)
Q Consensus 92 ~~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L-~~~~~~~f~i~~~~~~~~~~i~~rW~m~~~~~~----L-pw~~~i 163 (377)
...++|++|++|.||.. ...|++++++.++.+ +.+-+.+++++++...+++.+.+.|+|++.++. + +.+.++
T Consensus 18 ~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~~~g~~~g~~~~g~~~ 97 (129)
T TIGR02096 18 AVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAEWTVHGTYRTAFLGLPASGKTY 97 (129)
T ss_pred HHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEEEEEeeeeccccCCCCCCCCEE
Confidence 38899999999999975 467899999988777 444478899998877663499999999999832 2 356688
Q ss_pred EEEEEeEEEEeCCCCcEEEEeEeeeccC
Q 017096 164 VFTGTSVMGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 164 ~v~G~S~l~fn~~~GkI~~H~DyWD~~~ 191 (377)
.+.|++.++|+ + |||++|++|||...
T Consensus 98 ~~~~~~~~~~~-~-gkI~~~~~y~D~~~ 123 (129)
T TIGR02096 98 SIRGVTFFVFD-D-GKIKRETTYYNLAT 123 (129)
T ss_pred EeeeeEEEEEe-C-CEEEEEEEEecHHH
Confidence 99999999998 5 99999999999765
No 4
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.4e-11 Score=108.11 Aligned_cols=120 Identities=23% Similarity=0.368 Sum_probs=97.8
Q ss_pred CCCCCCccCHHHHHHHHHhhccccccCCCccccccCCCcEEeCCCCcc--cChHHHHHHHHHhh---hcc--ccEEEEEE
Q 017096 63 SSPPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKH--DTISGYLFNISMLK---MVF--RPAFQLHW 135 (377)
Q Consensus 63 ~~~~~~~~~~~~~~~~L~~dy~~lf~~~~~~~~iY~~dv~F~DP~~~~--~Gl~~y~~~~~~L~---~~~--~~~f~i~~ 135 (377)
+..++...+++.+-+.|++.+|.+|- +..+.++|+.||+|.|-+..+ .|+..|...|.+++ .++ +.+|++.+
T Consensus 26 ~~~~~~pe~L~~~yerLr~tlPklF~-~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~ 104 (202)
T KOG4457|consen 26 SHEKPAPEQLEHVYERLRETLPKLFR-RRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLS 104 (202)
T ss_pred cccCCChHHHHHHHHHHHHHhHHHHh-hcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEe
Confidence 33556778899999999999999998 668999999999999999755 79999999887764 444 56888888
Q ss_pred eEE-eCCcEEEEEEEEEEEe-cCCCCCCcE-----------EEEEEeEEEEeCCCCcEEEEe
Q 017096 136 VKQ-TGPYEITTRWTMVMKF-MPLPWKPEL-----------VFTGTSVMGINPETGKFCSHL 184 (377)
Q Consensus 136 ~~~-~~~~~i~~rW~m~~~~-~~Lpw~~~i-----------~v~G~S~l~fn~~~GkI~~H~ 184 (377)
+.. .++.++..||++.+.. .++-|++.+ .++|.|++.+|.+ |.||+|+
T Consensus 105 vt~h~d~~Tvr~RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~~-GlI~kh~ 165 (202)
T KOG4457|consen 105 VTPHIDEGTVRCRWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDGN-GLIYKHT 165 (202)
T ss_pred ecccCCCceEEEEEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECCC-ceEEeee
Confidence 864 4458999999998875 233455432 4999999999988 9999996
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.10 E-value=7.7e-10 Score=93.70 Aligned_cols=110 Identities=18% Similarity=0.267 Sum_probs=90.6
Q ss_pred HHhhccccccCCC--ccccccCCCcEEeCCC-CcccChHHHHHHHHHhhhcc-ccEEEEEEeEEeCCcEEEEEEEEEEEe
Q 017096 79 LYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITTRWTMVMKF 154 (377)
Q Consensus 79 L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~~~-~~~f~i~~~~~~~~~~i~~rW~m~~~~ 154 (377)
+++.|...+..+. ...++|++|+.+.+|. ....|+++|+..+..+...| +.++++.++...| +.+.++|++++.|
T Consensus 3 v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~g-d~v~~~~~~~Gth 81 (126)
T PF07366_consen 3 VRRFYEEVWNRGDLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVAEG-DRVAVRWTFTGTH 81 (126)
T ss_dssp HHHHHHHHHHTT-GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEET-TEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CEEEEEEEEEEee
Confidence 4455555544332 4789999999999997 68899999999998886666 8999999999888 9999999999999
Q ss_pred cC-----CCCCCcEEEEEEeEEEEeCCCCcEEEEeEeeeccC
Q 017096 155 MP-----LPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 155 ~~-----Lpw~~~i~v~G~S~l~fn~~~GkI~~H~DyWD~~~ 191 (377)
.. -|-+..+.+.|++.++|++ |||++|..+||..+
T Consensus 82 ~g~~~g~~ptgk~v~~~~~~~~~~~~--gkI~e~~~~~D~~~ 121 (126)
T PF07366_consen 82 TGEFMGIPPTGKPVEFRGMSIFRFED--GKIVEEWVYFDELS 121 (126)
T ss_dssp SSEBTTBE-TTEEEEEEEEEEEEEET--TEEEEEEEEECHHH
T ss_pred cCCcCCcCCCCCEEEEEEEEEEEEEC--CEEEEEEEEECHHH
Confidence 43 1345679999999999995 89999999999755
No 6
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.07 E-value=5e-10 Score=93.94 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=74.3
Q ss_pred ccccccCCCcEEeCCCCc--ccChHHHHHHHHHh-hhccccEEEEEEeEEeCCcEEEEEEEEEEEecCCCCCCcEEEEEE
Q 017096 92 IDRTAYDEQVKFRDPITK--HDTISGYLFNISML-KMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGT 168 (377)
Q Consensus 92 ~~~~iY~~dv~F~DP~~~--~~Gl~~y~~~~~~L-~~~~~~~f~i~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~ 168 (377)
...++|++|++|.||... ++|++++++.+..+ .......+.+......+ +.+.+.|+++... -+..+.+.|+
T Consensus 23 ~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~----~g~~~~~~~~ 97 (122)
T cd00781 23 GIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKRLELTGPVRASHG-GEAAFAFRVEFEW----EGQPCVVRVI 97 (122)
T ss_pred HHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCceEEecCceeeecC-CEEEEEEEEEEEe----CCceEEEEEE
Confidence 488999999999999754 99999999988766 33334454444444455 7888899998765 2667899999
Q ss_pred eEEEEeCCCCcEEEEeEeeeccC
Q 017096 169 SVMGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 169 S~l~fn~~~GkI~~H~DyWD~~~ 191 (377)
+.++|+++ |||.++++|||...
T Consensus 98 ~v~~~~~d-GkI~~~~~y~d~~~ 119 (122)
T cd00781 98 DVMRFDAD-GRIVSMRAYWGPVN 119 (122)
T ss_pred EEEEECCC-ccChHHHHhcCccc
Confidence 99999877 99999999999865
No 7
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=98.88 E-value=2.2e-08 Score=79.38 Aligned_cols=86 Identities=19% Similarity=0.260 Sum_probs=75.4
Q ss_pred cccccCCCcEEeCCCCcccChHHHHHHHHHh-hhccccEEEEEEeEEeCCcEEEEEEEEEEEecCCCCCCcEEEEEEeEE
Q 017096 93 DRTAYDEQVKFRDPITKHDTISGYLFNISML-KMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVM 171 (377)
Q Consensus 93 ~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~~L-~~~~~~~f~i~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l 171 (377)
..++|++||.|.||.....|.+++...++.+ ......+++++++...| +.+.++|++++.. .+-+..+.+.|++.+
T Consensus 16 i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-d~v~~~~~~~~~~--~~~g~~~~~~~~~~~ 92 (102)
T PF12680_consen 16 IAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDIFADG-DRVVVEWTVTGTT--PPTGQPISFRGCSVF 92 (102)
T ss_dssp HHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEET-TEEEEEEEEEEEE--TTTSCEEEEEEEEEE
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEEEEcC-CEEEEEEEEEEEE--cCCCCEEEEEEEEEE
Confidence 6799999999999988999999999988766 55557899999998888 9999999999974 355778899999999
Q ss_pred EEeCCCCcEEEE
Q 017096 172 GINPETGKFCSH 183 (377)
Q Consensus 172 ~fn~~~GkI~~H 183 (377)
+|. + |||++|
T Consensus 93 ~~~-d-gkI~~~ 102 (102)
T PF12680_consen 93 RFE-D-GKIVEH 102 (102)
T ss_dssp EEE-T-TEEEEE
T ss_pred EEE-C-CEEEEC
Confidence 996 5 999998
No 8
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=97.93 E-value=6.3e-05 Score=65.12 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=77.3
Q ss_pred HHHHHHHHhhccccccCCCccccccCCC-cEEeCCCCcccChHHHHHHHHHh-hhccccEEEEEEeEEeCCcEEEEEEEE
Q 017096 73 EWLVGFLYDDLPHLFDDQGIDRTAYDEQ-VKFRDPITKHDTISGYLFNISML-KMVFRPAFQLHWVKQTGPYEITTRWTM 150 (377)
Q Consensus 73 ~~~~~~L~~dy~~lf~~~~~~~~iY~~d-v~F~DP~~~~~Gl~~y~~~~~~L-~~~~~~~f~i~~~~~~~~~~i~~rW~m 150 (377)
.++++.+.+-+....... ....+.++| ++..-|+-.+.|+++..+.++.+ ..+....++||.+...| .+.+.+++
T Consensus 4 ~~vV~~F~~a~~~~D~~~-a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaadg--~~VltER~ 80 (125)
T PF07858_consen 4 EEVVRAFLAALEDRDVDA-ALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAADG--DVVLTERT 80 (125)
T ss_dssp HHHHHHHHHHHHHT-HHH-HHHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEET--TEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHH-HHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeecC--CEEEEEeE
Confidence 345555555555443211 245678899 88899999999999999988777 55667899999998876 66777777
Q ss_pred EEEecCCCCCCcEEEEEEeEEEEeCCCCcEEEEeEeeeccC
Q 017096 151 VMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 151 ~~~~~~Lpw~~~i~v~G~S~l~fn~~~GkI~~H~DyWD~~~ 191 (377)
---. ...++..+.+.-|-++.+. + |||+.-|||||+..
T Consensus 81 D~l~-~~dG~~~~~~~V~GvfEv~-d-GkI~~WRDYFD~~~ 118 (125)
T PF07858_consen 81 DVLR-FADGPLRIQFPVCGVFEVR-D-GKITLWRDYFDLAD 118 (125)
T ss_dssp EEEE-ETTTTEEEEEEEEEEEEEE-T-TEEEEEEEE--HHH
T ss_pred eeee-eecCCeEEEEEEEEEEEEE-C-CEEEEEeccCCHHH
Confidence 6654 1122234555555555666 4 99999999999876
No 9
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=97.24 E-value=0.003 Score=62.03 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=67.3
Q ss_pred ccccccCCCcEEeCCCC--cccChHHHHHHHHHh--hhccccEEEEEEeEEeCCcEEEEEEEEEEEecCCCCCCcEEEEE
Q 017096 92 IDRTAYDEQVKFRDPIT--KHDTISGYLFNISML--KMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTG 167 (377)
Q Consensus 92 ~~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L--~~~~~~~f~i~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G 167 (377)
...+++++||+|.+|.. .+.|.+++...|..+ ...+ +.+.+......| +.+.+.|... +-+..+.+.|
T Consensus 224 ~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~v~~~~~------~~~~~~~~~~ 295 (324)
T TIGR02960 224 ALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGA-AGMRLLPTIANG-QPAAAMYMRR------PDAERHTAFQ 295 (324)
T ss_pred HHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccC-CceeEEEeeecC-CceEEEEEEc------CCCCeeeeeE
Confidence 38899999999999985 499999999877766 3333 344444444566 7777777311 1244578999
Q ss_pred EeEEEEeCCCCcEEEEeEeeeccC
Q 017096 168 TSVMGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 168 ~S~l~fn~~~GkI~~H~DyWD~~~ 191 (377)
+..++|. + |||.....|||...
T Consensus 296 v~~~~~~-d-GkI~~~~~~~~~~~ 317 (324)
T TIGR02960 296 LHVLEIR-G-GRITHVTAFLDGPS 317 (324)
T ss_pred EEEEEEc-C-CcEEEEEEEcCCHH
Confidence 9999995 6 99999999999765
No 10
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=97.08 E-value=0.0044 Score=61.40 Aligned_cols=112 Identities=9% Similarity=-0.080 Sum_probs=75.2
Q ss_pred cCHHHHHHHHHhhccccccCCC--ccccccCCCcEEeCCCCc--ccChHHHHHHHHHhhhcc-ccEEEEEEeEEeCCcEE
Q 017096 70 VDVEWLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPITK--HDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEI 144 (377)
Q Consensus 70 ~~~~~~~~~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~~~--~~Gl~~y~~~~~~L~~~~-~~~f~i~~~~~~~~~~i 144 (377)
.+.+...+.+++.|..+.. +. ...+++++||++.+|-.. +.|.+++...+..+.... ...+.+......| +.+
T Consensus 211 ~~~~~~~~~v~~~~~A~~~-gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~g-~~v 288 (339)
T PRK08241 211 PDDPEERALLARYVAAFEA-YDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPTRANG-QPA 288 (339)
T ss_pred CCChHHHHHHHHHHHHHhc-CCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEeecCC-CeE
Confidence 3445555555555554433 33 378999999999999875 999999998887652222 1334444444455 666
Q ss_pred EEEEEEEEEecCCCCCCcEEEEEEeEEEEeCCCCcEEEEeEeeeccC
Q 017096 145 TTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 145 ~~rW~m~~~~~~Lpw~~~i~v~G~S~l~fn~~~GkI~~H~DyWD~~~ 191 (377)
.+.+. .. .-+..+.+.|++.+.++ + |||.+-++|||...
T Consensus 289 ~~~~~---~~---~~g~~~~~~~v~v~~v~-d-GkI~~~~~y~d~~~ 327 (339)
T PRK08241 289 FAQYM---RD---PDGGGHRPWALHVLELR-G-GRIAHVTSFLDTTL 327 (339)
T ss_pred EEEEE---Ec---CCCCeeecceEEEEEEe-C-CEEEEEEEEcChhh
Confidence 66442 11 22446788999999999 5 99999999999744
No 11
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=96.02 E-value=0.25 Score=43.48 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=88.2
Q ss_pred CeEEEEEcCcEEEEeecC---CcchhhHHHHHHhcccCCCCCCCCCCCCcceEEEeecCC---Cc--eEEEEEEcCCCCc
Q 017096 229 NYEVRRYSPFIVVETNGD---KLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDNE---LK--KVSIQIVLPQDKD 300 (377)
Q Consensus 229 ~yEiR~Y~~~~wa~t~~~---~~A~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~~~~---~~--~~tmsF~lP~~~~ 300 (377)
+++|+..++...|..... ......+|.+|+.++..+|-. .+.++...-...+ .. ++-+++.+|.+..
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~~~~~~~~~~L~~~~~~~~l~-----~~~~~~i~~D~p~~~~~~~~R~d~~i~v~~~~~ 76 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWEQTVKQGFEQLMMWVDSHNIV-----PKEWVAVYYDNPDEVPAEKLRCDTVVTVPDDFV 76 (156)
T ss_pred ceEEEEccCceEEEEEeecCchhHHHHHHHHHHHHHHHcCCC-----CCcEEEEECCCCCCCChHHceeeEEEEeCCCcc
Confidence 468888888888766532 223578999999999766542 1222222211111 12 3677888887653
Q ss_pred C-----C---ccccCeEEEEEEecCCCChHHHHHHHHH-HHHHHHhCCCcccCceEEEEEc-CCCCCCCCCceeeEEEEe
Q 017096 301 M-----S---RKVEGGIAAVLKFSGKPTEDIVHEKEKE-LHTSLIRDGLRPKIGCLLARYN-DPGQTWSFIMRNEVLIWL 370 (377)
Q Consensus 301 ~-----~---~~~p~~~vaV~~F~G~~te~~~~~~~~~-L~~~L~~~g~~~~~~~~~A~Yd-~P~~t~~~~RrNEV~i~v 370 (377)
. . ..+|++.+||..+.|. -+.+.+.... +.+||..+|.+..+.+.+-.|. .|. .+-.-.=||||+|
T Consensus 77 ~~~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~~~~~p~~E~Y~~~~~--~~~~~~tei~iPI 152 (156)
T PRK10016 77 LPENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQMAPKPCFEVYLNDGA--EDGYWDIEMYVPV 152 (156)
T ss_pred cCCCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCccCCCCCEEEeCCCCC--CCCcEEEEEEEEe
Confidence 2 2 6789999999999995 4556666656 7899999999988655555555 341 2233345999999
Q ss_pred cc
Q 017096 371 EE 372 (377)
Q Consensus 371 ~~ 372 (377)
+.
T Consensus 153 ~~ 154 (156)
T PRK10016 153 QK 154 (156)
T ss_pred EE
Confidence 74
No 12
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=96.02 E-value=0.23 Score=41.66 Aligned_cols=136 Identities=20% Similarity=0.208 Sum_probs=89.8
Q ss_pred CeEEEEEcCcEEEEeecC---Cc-c-hhhHHHHHHhcccCCCCCCCCCCCCcceEEEeecC----CC--ceEEEEEEcCC
Q 017096 229 NYEVRRYSPFIVVETNGD---KL-S-GSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDN----EL--KKVSIQIVLPQ 297 (377)
Q Consensus 229 ~yEiR~Y~~~~wa~t~~~---~~-A-~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~~~----~~--~~~tmsF~lP~ 297 (377)
+++|+.-++...+..... .. . ....+.+|..++.-.+... .+.|.+.-.... +. -.+.+.+.++.
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNITDDEEFRYDIGVEVDE 77 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSSTGCEEEEEEEEEECT
T ss_pred CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEeccccccCCcceEEEEEEEEcc
Confidence 478888888888766542 11 1 5678888888885332211 444444333221 11 45666666665
Q ss_pred CCcCC-----ccccCeEEEEEEecCCCChHHHHHHHHHHHH-HHHhCCCcccCc-eEEEEEcCCCCCCCCCceeeEEEEe
Q 017096 298 DKDMS-----RKVEGGIAAVLKFSGKPTEDIVHEKEKELHT-SLIRDGLRPKIG-CLLARYNDPGQTWSFIMRNEVLIWL 370 (377)
Q Consensus 298 ~~~~~-----~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~-~L~~~g~~~~~~-~~~A~Yd~P~~t~~~~RrNEV~i~v 370 (377)
..... ..+|++.+|+..|.|.. +.+.+....|.+ +|.++|+..... .+--..+.| ++..-.-.=||||||
T Consensus 78 ~~~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~~~~~~~~E~y~~~~-~~~~~~~~~ei~iPi 154 (155)
T PF06445_consen 78 DVPNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYERRDGPDFEIYLNDP-DTDEEEYVTEIYIPI 154 (155)
T ss_dssp TCSGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCEEESSEEEEEEESST-TTTSCGEEEEEEEEE
T ss_pred cccCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCccCCCCcEEEECCCC-CCCCCceEEEEEEEE
Confidence 43222 78899999999999987 888889999999 999999954444 444445555 333345677999998
Q ss_pred c
Q 017096 371 E 371 (377)
Q Consensus 371 ~ 371 (377)
+
T Consensus 155 k 155 (155)
T PF06445_consen 155 K 155 (155)
T ss_dssp E
T ss_pred C
Confidence 5
No 13
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=95.47 E-value=0.19 Score=40.08 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=66.3
Q ss_pred HHHhhccccccCCC--ccccccCCCcEEeCCC-----CcccChHHHHHHHHHhhh--ccccEE-EEEEeEEeCC---cEE
Q 017096 78 FLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-----TKHDTISGYLFNISMLKM--VFRPAF-QLHWVKQTGP---YEI 144 (377)
Q Consensus 78 ~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~-----~~~~Gl~~y~~~~~~L~~--~~~~~f-~i~~~~~~~~---~~i 144 (377)
.|...|...++.+. .+..+|++|++|..|. ....|++++...+..+.. .....+ .-..+...++ ..+
T Consensus 3 ~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~ 82 (124)
T cd00531 3 QFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVVV 82 (124)
T ss_pred HHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEEE
Confidence 45555666655222 4889999999999998 577999988888766632 122222 1122222322 245
Q ss_pred EEEEEEEEEecCCCCCCcEEEEEEeEEEEeC--CCCcEEEEeEeee
Q 017096 145 TTRWTMVMKFMPLPWKPELVFTGTSVMGINP--ETGKFCSHLDLWD 188 (377)
Q Consensus 145 ~~rW~m~~~~~~Lpw~~~i~v~G~S~l~fn~--~~GkI~~H~DyWD 188 (377)
...|.+..... +....+.|.-...+.. +.+||...+.+||
T Consensus 83 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~~ 124 (124)
T cd00531 83 SVFGVLRTRGD----GEQDVFAGGQTFVLRPQGGGGKIANRRFRLD 124 (124)
T ss_pred EEEEEEEEccC----CceeEEEEEEEEEEEEeCCEEEEEEEEEecC
Confidence 55666665541 3455667777766663 1278999998885
No 14
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=95.39 E-value=0.19 Score=44.18 Aligned_cols=100 Identities=8% Similarity=-0.022 Sum_probs=71.3
Q ss_pred HHHHHHHhhccccccCCC--ccccccCCCcEEeCCC-CcccChHHHHHHHHHhhhcc--ccEEEEEEeE--EeCCcEEEE
Q 017096 74 WLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKMVF--RPAFQLHWVK--QTGPYEITT 146 (377)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~~~--~~~f~i~~~~--~~~~~~i~~ 146 (377)
..++.+-.|+...+.... ...+.|+||+.|-||. -.++|.+.|++.++..-.+. ...|++.++. ..| +.+++
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~G-D~a~~ 88 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESG-DVAFV 88 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccC-CEEEE
Confidence 456666666655555444 3678899999999997 68899999999997764444 5688888877 677 78777
Q ss_pred EEEEEEEecCCCCCCcEEEEEEeEEEEeC
Q 017096 147 RWTMVMKFMPLPWKPELVFTGTSVMGINP 175 (377)
Q Consensus 147 rW~m~~~~~~Lpw~~~i~v~G~S~l~fn~ 175 (377)
.=..++.- +.+.++.....|.-++.|..
T Consensus 89 ~~~~~~~~-~~~dg~~~~~~~Rat~v~rK 116 (137)
T COG4319 89 TALLLLTG-TKKDGPPADLAGRATYVFRK 116 (137)
T ss_pred EEeeeeec-cCCCCcchhheeeeEEEEEE
Confidence 65555554 23556666677777777753
No 15
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=94.51 E-value=0.44 Score=38.74 Aligned_cols=79 Identities=8% Similarity=0.010 Sum_probs=54.1
Q ss_pred cccccCCCcEEeCCCC--cccChHHHHHHHHH-hhhccccEEEEEEeE--EeCCcEEEEEEEEEEEecCCCCCCcEEEEE
Q 017096 93 DRTAYDEQVKFRDPIT--KHDTISGYLFNISM-LKMVFRPAFQLHWVK--QTGPYEITTRWTMVMKFMPLPWKPELVFTG 167 (377)
Q Consensus 93 ~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~-L~~~~~~~f~i~~~~--~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G 167 (377)
..++|++|+.+.+|.. .+.|.++++.++.. +...-...+++.++. ..+ +.+.+.+.+++..+ .-+......|
T Consensus 20 ~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~a~~~~~~~~~~~--~~~~~~~~~~ 96 (121)
T PF13474_consen 20 LLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSG-DVAVVTGEFRLRFR--NDGEEIEMRG 96 (121)
T ss_dssp HHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEET-TEEEEEEEEEEEEE--CTTCEEEEEE
T ss_pred HHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECC-CEEEEEEEEEEEEe--cCCccceeeE
Confidence 7899999999998654 56899999998865 354445566665543 344 88999988888763 3344445555
Q ss_pred EeEEEEe
Q 017096 168 TSVMGIN 174 (377)
Q Consensus 168 ~S~l~fn 174 (377)
..++.|-
T Consensus 97 r~t~v~~ 103 (121)
T PF13474_consen 97 RATFVFR 103 (121)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5555554
No 16
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=94.33 E-value=0.95 Score=37.29 Aligned_cols=80 Identities=6% Similarity=-0.063 Sum_probs=53.0
Q ss_pred HHHHHHHhhccccccCCC--ccccccCCCcEEeCCC-CcccChHHHHHHHHHh-hhccc---cEEEEEEeEEeCCcEEEE
Q 017096 74 WLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-TKHDTISGYLFNISML-KMVFR---PAFQLHWVKQTGPYEITT 146 (377)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L-~~~~~---~~f~i~~~~~~~~~~i~~ 146 (377)
+.++.|.+.|...+..+. ...++|++|+.|.++. ..+.|.+++..++..+ ..... .++++..+...+++.+.+
T Consensus 4 ~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~ 83 (128)
T TIGR02246 4 RAIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIV 83 (128)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEE
Confidence 456666666776666454 3889999999999554 4679999999988654 33332 355556666566566666
Q ss_pred EEEEEEE
Q 017096 147 RWTMVMK 153 (377)
Q Consensus 147 rW~m~~~ 153 (377)
....++.
T Consensus 84 ~~~~~~~ 90 (128)
T TIGR02246 84 HAIQTIT 90 (128)
T ss_pred EEEEEEE
Confidence 5554444
No 17
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=94.25 E-value=0.43 Score=41.79 Aligned_cols=112 Identities=13% Similarity=-0.020 Sum_probs=79.8
Q ss_pred HHHHHHhhcccccc-CCCccccccCCCcEEeCCCC-----c-ccChHHHHHHHHHhhhcc-ccEEEEEEeEEeCCcEEEE
Q 017096 75 LVGFLYDDLPHLFD-DQGIDRTAYDEQVKFRDPIT-----K-HDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITT 146 (377)
Q Consensus 75 ~~~~L~~dy~~lf~-~~~~~~~iY~~dv~F~DP~~-----~-~~Gl~~y~~~~~~L~~~~-~~~f~i~~~~~~~~~~i~~ 146 (377)
..+.++.-|..+.. +..-+.+++++|+++.=|.. . ..|.+.....+..+...+ .+++++..+..+|+..+.+
T Consensus 6 ~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~gD~~~~v 85 (133)
T COG3631 6 NTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSGDPVGAV 85 (133)
T ss_pred hhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEcCCceEEE
Confidence 34455555555544 12248899999999984432 2 346666677777776666 8999999999988677767
Q ss_pred EEEEEEEecCCCCCCcEEEEEEeEEEEeCCCCcEEEEeEeeeccC
Q 017096 147 RWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 147 rW~m~~~~~~Lpw~~~i~v~G~S~l~fn~~~GkI~~H~DyWD~~~ 191 (377)
.|.-.... .-++.+.-.=+..+++.+ |||.+-++|||...
T Consensus 86 ~~~~~~~~---~~G~~~~~~~~~v~~vrd--GrI~~~~~y~D~~~ 125 (133)
T COG3631 86 FRTRGRVS---RTGKPYENRYAFVIRVRD--GRITRYREYVDTLA 125 (133)
T ss_pred EEecCccc---ccCceeecceEEEEEEeC--CEEEEEEEEechHh
Confidence 77665332 235566777788899984 99999999999877
No 18
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=94.01 E-value=0.0067 Score=61.77 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=87.6
Q ss_pred CccC--HHHHHHHHHhhccccccCCCccccccCCCcEEeCCCCcccChHHHHHHHHHhh---hcc--ccEEEEEEeEEeC
Q 017096 68 STVD--VEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLK---MVF--RPAFQLHWVKQTG 140 (377)
Q Consensus 68 ~~~~--~~~~~~~L~~dy~~lf~~~~~~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~~L~---~~~--~~~f~i~~~~~~~ 140 (377)
+.+| +..+++.|+...+.|+. ....-++|+.+|.|.|+.+.+.+|..|..|+..++ .++ .+...+.-++..=
T Consensus 65 YqIN~la~~~l~mL~lQ~~~L~~-mEs~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkPi 143 (483)
T KOG2546|consen 65 YQINTLAGHALRMLDLQAPQLRY-MESQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKPI 143 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceeccc
Confidence 7888 88999999999999887 44567999999999999999999999999886663 233 3445555666665
Q ss_pred CcEEEEEEEEEEEecCCCCCCcEEEEEEeEEEEeCC
Q 017096 141 PYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPE 176 (377)
Q Consensus 141 ~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l~fn~~ 176 (377)
+..+++|+-||. +.+|.++-.++|+++..|+..
T Consensus 144 -d~~mLd~igHGI--r~~~~~rg~~~g~~t~~l~rs 176 (483)
T KOG2546|consen 144 -DYSMLDDIGHGI--RGSWETRGRFDGTSTGKLSRS 176 (483)
T ss_pred -cceeeecccccc--ccccccccCcCcccccccCCC
Confidence 699999999998 678999999999999999965
No 19
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=90.76 E-value=2.7 Score=37.82 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=87.0
Q ss_pred CeEEEEEcCcEEEEee--cCCcchhhHHHHHHhcccCCCCCCCCCCCCcceEEEee--cC----CCceEEEEEEcCCCCc
Q 017096 229 NYEVRRYSPFIVVETN--GDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAY--DN----ELKKVSIQIVLPQDKD 300 (377)
Q Consensus 229 ~yEiR~Y~~~~wa~t~--~~~~A~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~--~~----~~~~~tmsF~lP~~~~ 300 (377)
++||+.-++..+|.-. +...-..++|.+|+.+-.-+|--.. +..-+.-.. +. +.-.+-.+..+|...+
T Consensus 2 dv~I~e~p~~~VA~~rh~G~~~~~~~~~~~l~~W~~~~~l~p~----~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~~~~~ 77 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVGDPATLKQTFEQLIAWRRENGLLPE----QSETLGIYQDDPDTTPAEKCRYDACVVVPEPIP 77 (154)
T ss_pred CceEEecCCceEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCCC----CceEEEEecCCCCCCCHHHceeeEEEEcCCccC
Confidence 7899999999988654 3334467899999999875543221 222222111 11 1245677777875555
Q ss_pred CC------ccccCeEEEEEEecCCCChHHHHHH-HHHHHHHHHhCCCcccCceEEEEEcCCCCCCCCCceeeEEEE
Q 017096 301 MS------RKVEGGIAAVLKFSGKPTEDIVHEK-EKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMRNEVLIW 369 (377)
Q Consensus 301 ~~------~~~p~~~vaV~~F~G~~te~~~~~~-~~~L~~~L~~~g~~~~~~~~~A~Yd~P~~t~~~~RrNEV~i~ 369 (377)
.+ .++|++..||.+|.|.. +++.+- ......||.+.|..+.+.+.+.+|=+.+ ...---|+.++
T Consensus 78 ~n~~~v~~~~i~GG~YAV~r~~~~~--d~~~~aw~~if~ewlp~Sg~~~~d~P~~e~y~n~~---~~~~~~e~~vd 148 (154)
T COG3449 78 ENSEGVQLGEIPGGLYAVARFRGTA--DDLAKAWGYIFGEWLPASGYEPRDRPILERYLNFP---AEDPEHEIEVD 148 (154)
T ss_pred CCCCceeEeeecCCceEEEEEeccH--HHHHHHHHHHHhhhccccCcccCCCchHHHHhccC---CCCcceeEEEE
Confidence 44 67899999999999974 444444 5557888999999999888888885552 33344455444
No 20
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.56 E-value=0.98 Score=38.91 Aligned_cols=110 Identities=13% Similarity=0.065 Sum_probs=68.9
Q ss_pred HHHHHHHHhhccccccCCCccccccCCCcEEeC-CCCcccChHHHHHHHH-HhhhccccEEEEEEeEEeCCcEEEEEEEE
Q 017096 73 EWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRD-PITKHDTISGYLFNIS-MLKMVFRPAFQLHWVKQTGPYEITTRWTM 150 (377)
Q Consensus 73 ~~~~~~L~~dy~~lf~~~~~~~~iY~~dv~F~D-P~~~~~Gl~~y~~~~~-~L~~~~~~~f~i~~~~~~~~~~i~~rW~m 150 (377)
-++++.+..-+++...+. ....+..+|-++.+ |+.+++|.+.-...+. .+.....-.|+|+.+...| +.+.. =+.
T Consensus 9 i~~V~aF~aA~~~~d~~~-avr~~~~~d~v~~n~gis~i~G~~~~ia~l~~~~~~~~~~ef~I~riAadg-~~Vlt-ER~ 85 (130)
T COG4308 9 IRTVEAFLAALQEDDGDA-AVRRLGTPDTVYNNVGISTIHGPAETIALLRPRMAGILGFEFKILRIAADG-GAVLT-ERL 85 (130)
T ss_pred HHHHHHHHHHHHhcCccH-HHHHhcCCCeeeccCCcccccchhhhhhhhccccCCcceeEEEEEEEeccc-ceehh-hhh
Confidence 356666666676655422 46677777777775 5679999987666443 3333445689999998777 33322 222
Q ss_pred EEEecCCCCCCc-EEEEEEeEEEEeCCCCcEEEEeEeeeccC
Q 017096 151 VMKFMPLPWKPE-LVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 151 ~~~~~~Lpw~~~-i~v~G~S~l~fn~~~GkI~~H~DyWD~~~ 191 (377)
- .+ .-|+. ..+.-|-.|...+ |||..-|||+|+..
T Consensus 86 D-~~---~~g~~~~~~~V~GvfEV~~--~rI~~WRDYFDv~~ 121 (130)
T COG4308 86 D-AR---IDGPLWVQFWVCGVFEVED--GRIVLWRDYFDVND 121 (130)
T ss_pred h-hh---ccCCcEEEEEEEEEEEEeC--CEEEeehhhhhHHH
Confidence 2 11 11222 3344555677763 89999999999876
No 21
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=90.51 E-value=1.6 Score=34.26 Aligned_cols=79 Identities=11% Similarity=-0.047 Sum_probs=52.0
Q ss_pred cccccCCCcEEeCCCCcccChHHHHHHHHHh-hhccccEEEEEEeEEeCCcEEEEEEEEEEEecCCCCCCcEEEEEEeEE
Q 017096 93 DRTAYDEQVKFRDPITKHDTISGYLFNISML-KMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVM 171 (377)
Q Consensus 93 ~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~~L-~~~~~~~f~i~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l 171 (377)
..++|++|+.|..|.....|.+.+...+..- ......+++...+...+ +.+.+.=+.+.... - .+..+.+.|....
T Consensus 20 ~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~g-d~a~~~~~~~~~~~-~-~g~~~~~~~~~~~ 96 (107)
T PF14534_consen 20 LASLYADDFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVLG-DTAVVRGRWTFTWR-G-DGEPVTIRGRFTS 96 (107)
T ss_dssp HHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEET-TEEEEEEEEEEEET-T-TTEEEEEEEEEEE
T ss_pred HHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEEC-CEEEEEEEEEEEEe-c-CCceEEEEEEEEE
Confidence 7899999999999999888998887766431 11123355556666666 67666655555542 2 3455667776666
Q ss_pred EEe
Q 017096 172 GIN 174 (377)
Q Consensus 172 ~fn 174 (377)
.|-
T Consensus 97 v~~ 99 (107)
T PF14534_consen 97 VWK 99 (107)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 22
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=87.94 E-value=1.7 Score=37.62 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=63.6
Q ss_pred cCCCcEEeCCCCcccChHHHHHHHHHhh-hccccEEEEEEeEEeCCcEEEEEEEEEEEecC----C-CCCCcEEEEEEeE
Q 017096 97 YDEQVKFRDPITKHDTISGYLFNISMLK-MVFRPAFQLHWVKQTGPYEITTRWTMVMKFMP----L-PWKPELVFTGTSV 170 (377)
Q Consensus 97 Y~~dv~F~DP~~~~~Gl~~y~~~~~~L~-~~~~~~f~i~~~~~~~~~~i~~rW~m~~~~~~----L-pw~~~i~v~G~S~ 170 (377)
+-+|+++-. +...|+++|..++-..- .+-+-+|++..+...+ +.+..|=+|.|.++. + |-|+++.+.-.--
T Consensus 30 fv~~~v~~n--g~~~glsgyr~ml~~df~aiPdl~f~ie~lvae~-~~vaarl~Fdctp~G~i~Gip~nGkrV~Fse~vf 106 (131)
T COG5485 30 FVDGNVMHN--GRLQGLSGYREMLVRDFSAIPDLSFEIERLVAEG-DRVAARLTFDCTPSGEIMGIPPNGKRVRFSENVF 106 (131)
T ss_pred CCcCeeeeC--CceechHHHHHHHHhhHhhCCCcceEEEEEeecC-CceEEEEEEccCcCceEeccCCCCcEEEeehhhh
Confidence 444555432 46789999998765543 3337899999987777 899999999987643 2 4666777776666
Q ss_pred EEEeCCCCcEEEEeEeeeccC
Q 017096 171 MGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 171 l~fn~~~GkI~~H~DyWD~~~ 191 (377)
|.|- + |||++|.-..|..+
T Consensus 107 y~f~-~-~KI~~vwsv~Dk~a 125 (131)
T COG5485 107 YEFE-N-GKIVEVWSVIDKMA 125 (131)
T ss_pred hhhc-C-CeEEeeehhccHHH
Confidence 7775 3 89999876666554
No 23
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=86.95 E-value=9.8 Score=34.01 Aligned_cols=96 Identities=10% Similarity=0.027 Sum_probs=61.7
Q ss_pred cccccCCCcEEeCCCC------cccChHHHHHHHHHhhhcc-c-cEEEEEEeEEeCCcEEEEEEEEEEEecCCCCCCcEE
Q 017096 93 DRTAYDEQVKFRDPIT------KHDTISGYLFNISMLKMVF-R-PAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELV 164 (377)
Q Consensus 93 ~~~iY~~dv~F~DP~~------~~~Gl~~y~~~~~~L~~~~-~-~~f~i~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~ 164 (377)
-.++|++|=.=--+.+ -++|.+++.+.-..+-.+| + -+..|.-...++++.+.+.-+=++.. .+|+-|+..
T Consensus 38 Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFPDWeW~nv~ifeT~DP~~fwVEcdG~G~i-~fpGypeg~ 116 (162)
T PF03284_consen 38 RHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFPDWEWYNVRIFETQDPNHFWVECDGRGKI-LFPGYPEGY 116 (162)
T ss_dssp GGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHSTT-EEEEEEEEEBSSTTEEEEEEEEEEEE---TTS--EE
T ss_pred hheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCCCcEEEEEEeecccCCCEEEEEecCccce-ecCCCCccc
Confidence 3466777655444443 4799999998655555555 3 24444444456679999999999998 788888766
Q ss_pred EEEEe--EEEEeCCCCcEEEEeEeeeccC
Q 017096 165 FTGTS--VMGINPETGKFCSHLDLWDSIK 191 (377)
Q Consensus 165 v~G~S--~l~fn~~~GkI~~H~DyWD~~~ 191 (377)
++-.= -+.|+ + |||...|+|.|..+
T Consensus 117 y~NHfiHsFel~-n-GkI~~~REFmNp~q 143 (162)
T PF03284_consen 117 YENHFIHSFELE-N-GKIKRNREFMNPFQ 143 (162)
T ss_dssp EEEEEEEEEEEE-T-TEEEEEEEEE-HHH
T ss_pred ceeeeEEEEEee-C-CEEEeehhhcCHHH
Confidence 55433 34555 3 99999999987666
No 24
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=83.94 E-value=23 Score=29.34 Aligned_cols=120 Identities=11% Similarity=0.037 Sum_probs=69.7
Q ss_pred hhhHHHHHHhcccCCCCCCCCCCCCcceEEEee-cCC----CceEEEEEEcCCCCcCC-----ccccCeEEEEEEecCCC
Q 017096 250 GSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAY-DNE----LKKVSIQIVLPQDKDMS-----RKVEGGIAAVLKFSGKP 319 (377)
Q Consensus 250 ~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~-~~~----~~~~tmsF~lP~~~~~~-----~~~p~~~vaV~~F~G~~ 319 (377)
....|.+|+.++...+....... ..+...... +.. .-++.+.+.++...... ..+|++.+++..|.|-
T Consensus 26 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~p~~~y~~~~~~g~- 103 (158)
T smart00871 26 IPELWQRLIAWAKELGLLPIGPS-GPPYGVYYDDPDDTPEGEFRYDAGVEVSDEVENPEGVETKEIPAGKYAVFTHKGG- 103 (158)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCC-ccEEEEECCCCCCCChhHeEEEEEEEeCCCCCCCCCceEEEECCCcEEEEEEcCC-
Confidence 46678888888765443222211 122222211 111 13456666666554322 6789999999999993
Q ss_pred ChHHHHHHHHHHHHHHHhCCCccc---CceEEEEEcCCCCCCCCCceeeEEEEec
Q 017096 320 TEDIVHEKEKELHTSLIRDGLRPK---IGCLLARYNDPGQTWSFIMRNEVLIWLE 371 (377)
Q Consensus 320 te~~~~~~~~~L~~~L~~~g~~~~---~~~~~A~Yd~P~~t~~~~RrNEV~i~v~ 371 (377)
..+.+.+...+|..++..+|.... +..+--.++.|.-+.+....=|++|+|+
T Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~E~y~~~~~~~~~~~~~~ei~ipv~ 158 (158)
T smart00871 104 SYDEIQETWEAIYGEWLPNSGYELRDAGPDFEIYLNDPADTDPEELVTEIYIPIK 158 (158)
T ss_pred CHHHHHHHHHHHHHhhcccCCCccCcCCceEEEEeCCCCCCChhHeEEEEEEEcC
Confidence 477789999999999888775432 2222233444511222345778998874
No 25
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=78.98 E-value=17 Score=29.60 Aligned_cols=80 Identities=11% Similarity=-0.038 Sum_probs=53.0
Q ss_pred HHHHHHHhhccccccCCC--ccccccCCCcEEeCCC---CcccChHHHHHHHHHh-hhccc-cEEEE-EEeEEeCCcEEE
Q 017096 74 WLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI---TKHDTISGYLFNISML-KMVFR-PAFQL-HWVKQTGPYEIT 145 (377)
Q Consensus 74 ~~~~~L~~dy~~lf~~~~--~~~~iY~~dv~F~DP~---~~~~Gl~~y~~~~~~L-~~~~~-~~f~i-~~~~~~~~~~i~ 145 (377)
+.|+.|...|....+... ...++|++|+.|.=+- ..+.|++++.+.+... ..... .++.. ..+...+ +.+.
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dg-d~A~ 85 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDG-DTAT 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcC-CEEE
Confidence 355666666666666454 4889999999997663 5899999999988654 21111 11111 1223356 7999
Q ss_pred EEEEEEEEe
Q 017096 146 TRWTMVMKF 154 (377)
Q Consensus 146 ~rW~m~~~~ 154 (377)
++|.+...+
T Consensus 86 ~~~~~~~~~ 94 (127)
T PF13577_consen 86 VRSYVLATH 94 (127)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999886
No 26
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=76.79 E-value=12 Score=32.58 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=49.3
Q ss_pred ccccCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccCceEEEEEcCCCCCCCCCceeeEEEEec
Q 017096 303 RKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMRNEVLIWLE 371 (377)
Q Consensus 303 ~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~g~~~~~~~~~A~Yd~P~~t~~~~RrNEV~i~v~ 371 (377)
+.+|+..++.++..|...+ .+.+...+|.+++.++|+... .++.-.||.|.-+++-.-|=.|.|-+.
T Consensus 6 ~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~~~-~~~~i~~D~p~~~~~~~~R~d~~i~v~ 72 (156)
T PRK10016 6 KQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIVPK-EWVAVYYDNPDEVPAEKLRCDTVVTVP 72 (156)
T ss_pred EEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCCCC-cEEEEECCCCCCCChHHceeeEEEEeC
Confidence 4678899999999998753 467888999999999999864 478888999943344443555555443
No 27
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.67 E-value=26 Score=30.23 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=41.5
Q ss_pred cccChHHHHHHHHHh-hhccccEEEEEEeEEeCCcEEEEEEEEEEEecCCCCCCcEEEEEEeEEEEeCCCCcEEEEeEee
Q 017096 109 KHDTISGYLFNISML-KMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLW 187 (377)
Q Consensus 109 ~~~Gl~~y~~~~~~L-~~~~~~~f~i~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l~fn~~~GkI~~H~DyW 187 (377)
--.|.+++.++|..+ +.--..+..|......| +-+++.--=+.. -|+ .-...-+-++++++ |||.+| |
T Consensus 42 vpdGk~~fv~fFt~ffk~~P~~~~kiVr~iadG-dLV~vh~hqt~~---~pg--~~~~v~~DtfR~dd--gkivEH---W 110 (129)
T COG4922 42 VPDGKDGFVRFFTEFFKEKPRISTKIVRVIADG-DLVTVHYHQTVS---EPG--SYTTVTFDTFRIDD--GKIVEH---W 110 (129)
T ss_pred CCCchHHHHHHHHHHHHhCccccceeeEEeccC-CEEEEEEeeeeC---CCC--cceeEEEEEEEeeC--Cceeec---c
Confidence 347999999988543 33223445555555566 666554322221 121 12344466788885 899877 7
Q ss_pred eccC
Q 017096 188 DSIK 191 (377)
Q Consensus 188 D~~~ 191 (377)
|+..
T Consensus 111 Dviq 114 (129)
T COG4922 111 DVIQ 114 (129)
T ss_pred chhh
Confidence 7776
No 28
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=72.70 E-value=11 Score=30.81 Aligned_cols=77 Identities=10% Similarity=-0.049 Sum_probs=50.3
Q ss_pred HHHHhhcccccc-CCCccccccCCCcEEeCCCCc--ccChHHHHHHHHHhhhccccEEEEEEeEEe--CCcEEEEEEEEE
Q 017096 77 GFLYDDLPHLFD-DQGIDRTAYDEQVKFRDPITK--HDTISGYLFNISMLKMVFRPAFQLHWVKQT--GPYEITTRWTMV 151 (377)
Q Consensus 77 ~~L~~dy~~lf~-~~~~~~~iY~~dv~F~DP~~~--~~Gl~~y~~~~~~L~~~~~~~f~i~~~~~~--~~~~i~~rW~m~ 151 (377)
.++++-|..+.. +...+..+|++|..+.++... +.|.++..+.+..|..-. +++.+..+... +.....+-+..+
T Consensus 4 ~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~-~~~~i~~~d~qp~~~~~~~i~i~v~ 82 (118)
T PF02136_consen 4 SFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATG-VQHRITSVDCQPSPSSDGSILITVT 82 (118)
T ss_dssp HHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSS-EEEEEEEEEEEEEEECCSEEEEEEE
T ss_pred HHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcc-cEEEecccccccccccCCcEEEEEE
Confidence 344444554444 223488999999999999887 999999998777662222 36667666544 223445566667
Q ss_pred EEe
Q 017096 152 MKF 154 (377)
Q Consensus 152 ~~~ 154 (377)
|..
T Consensus 83 G~~ 85 (118)
T PF02136_consen 83 GQF 85 (118)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
No 29
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=66.35 E-value=40 Score=32.71 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=32.4
Q ss_pred ccccccCCCcEEe-CC-------CCcccChHHHHHHHHHhhhcccc--EEEEEEeEEeC
Q 017096 92 IDRTAYDEQVKFR-DP-------ITKHDTISGYLFNISMLKMVFRP--AFQLHWVKQTG 140 (377)
Q Consensus 92 ~~~~iY~~dv~F~-DP-------~~~~~Gl~~y~~~~~~L~~~~~~--~f~i~~~~~~~ 140 (377)
.+.+++++||.|. |. +..+.|.+...+.|..+...+.+ .+.+.-+...|
T Consensus 191 ~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~~~~vnG 249 (293)
T PRK09636 191 ALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVRLALVNG 249 (293)
T ss_pred HHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEEEEEECC
Confidence 4889999999999 54 24578999988887666443332 23333334455
No 30
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=56.19 E-value=1.2e+02 Score=26.00 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCCCCCccCHHHHHHHHHhhccccccCCCccccccCCCc---EEeC-CCCcccChHHHHHHHHHhhhccccEEEEEEeEE
Q 017096 63 SSPPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQV---KFRD-PITKHDTISGYLFNISMLKMVFRPAFQLHWVKQ 138 (377)
Q Consensus 63 ~~~~~~~~~~~~~~~~L~~dy~~lf~~~~~~~~iY~~dv---~F~D-P~~~~~Gl~~y~~~~~~L~~~~~~~f~i~~~~~ 138 (377)
+.+....++..++.+-+++++..++.+.. -.....+|. .|.| ++..-.....+.+.+...=.-++||+...++..
T Consensus 14 ~~~~~~~~~~~~l~~sI~~~L~~LLnTr~-g~~~~~~~yGl~d~~~~~~~~~~~~~~i~~~I~~aI~r~EPRl~~~~V~~ 92 (133)
T TIGR03357 14 ESPSTRRSSAEQLRESIRRHLERLLNTRR-GSCASLPDYGLPDLNDLSLSSADDRRRIRRAIEQAIERYEPRLSSVRVTA 92 (133)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHccCC-CccccccccCCcccccccccCHHHHHHHHHHHHHHHHhcCCCcCceEEEE
Confidence 33445677889999999999999988642 111122222 3333 333322233344433333344589988877765
Q ss_pred eC--CcEEEEEEEEEEEec
Q 017096 139 TG--PYEITTRWTMVMKFM 155 (377)
Q Consensus 139 ~~--~~~i~~rW~m~~~~~ 155 (377)
.. .....+++.+.+.+.
T Consensus 93 ~~~~~~~~~l~f~I~~~l~ 111 (133)
T TIGR03357 93 LEDEEDPLALRFRIEAELD 111 (133)
T ss_pred ecCCCCccEEEEEEEEEEE
Confidence 32 345678888888873
No 31
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=55.44 E-value=29 Score=33.59 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=46.1
Q ss_pred ccccCeEEEEEEecCCCChHHHHHHHHH-HHHHHHhCCCcccCceEEEEEcC----CCCCCCCCceeeEEEEec
Q 017096 303 RKVEGGIAAVLKFSGKPTEDIVHEKEKE-LHTSLIRDGLRPKIGCLLARYND----PGQTWSFIMRNEVLIWLE 371 (377)
Q Consensus 303 ~~~p~~~vaV~~F~G~~te~~~~~~~~~-L~~~L~~~g~~~~~~~~~A~Yd~----P~~t~~~~RrNEV~i~v~ 371 (377)
..+|+++.||.+|.|-..+ +.+-... +..||-..|+...+.+-+-.|.. |..+..-.-.=||||||+
T Consensus 217 ~~Ip~G~YAvF~~~G~~~~--l~~~~~~Iy~~WLP~sg~~~~~~p~~e~y~~~~~~~~~~~~~~~~~ei~iPi~ 288 (289)
T PRK15121 217 VMLQGGEYVMFTYEGLGTG--LQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEYLIPIR 288 (289)
T ss_pred EeeCCCCEEEEEEeCCHHH--HHHHHHHHHHHHCCCCCccccCCCCEEEEecccCccccCCCceEEEEEEEEec
Confidence 5779999999999999743 6666555 46799999999887665556633 211212223349999986
No 32
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=46.32 E-value=1e+02 Score=27.61 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=76.9
Q ss_pred eEEEEEcCcEEEEeec---CCcchhhHHHHHHhcccCCCCCCCCCCCCcceEEEee--c--CCCceEEEEEEcCCCCc--
Q 017096 230 YEVRRYSPFIVVETNG---DKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAY--D--NELKKVSIQIVLPQDKD-- 300 (377)
Q Consensus 230 yEiR~Y~~~~wa~t~~---~~~A~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~--~--~~~~~~tmsF~lP~~~~-- 300 (377)
..+...++...+.... ........+..|.+++.-++. +.++ |+..... + ...-..-+++++=...+
T Consensus 5 ~~~~~~~~~~v~~ir~~~~~~~~~~~~~~el~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~ 79 (153)
T COG4978 5 VVIKKLEEIKVVGIRFTGIPERLIEQVYSELCNFLKSNGI----IPIG-PYGATIFHEPLKEEDVDIEVSIPISGEVEGD 79 (153)
T ss_pred cEEEeecceeEEEEEEecCcHHHHHHHHHHHHHHHhhcCc----cccC-CceEEEEeeeecccccccceeEEEEEecCCC
Confidence 3455666666654442 233456778888888764431 1111 2211111 1 00001223333222222
Q ss_pred --CC-ccccCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccCceEEEEEcCCC-CCCCCCceeeEEEEecc
Q 017096 301 --MS-RKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPG-QTWSFIMRNEVLIWLEE 372 (377)
Q Consensus 301 --~~-~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~g~~~~~~~~~A~Yd~P~-~t~~~~RrNEV~i~v~~ 372 (377)
.. ..+|+++++...|.|.. +.+.+..++|..+++++|++..|..+=---.+|. -..+..=.-||.|++++
T Consensus 80 ~~~~~~~~P~g~~a~~~~~G~~--~~~~~~y~rli~~iee~g~~i~g~~~E~y~~d~~~~~~~~e~~tei~i~v~~ 153 (153)
T COG4978 80 IDIKIKTLPKGKYACIIHKGSY--EEVEQAYKRLIEYIEENGLEIIGPSREVYLIDPATEVNPEEYLTEIQIPVKE 153 (153)
T ss_pred CcceeEEccCceEEEEEEEcCc--ccHHHHHHHHHHHHHHhCCcccCceEEEEecCCccccChhHeEEEEEEEeeC
Confidence 11 67899999999999985 5578899999999999999998864433344442 01122356788887753
No 33
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=42.38 E-value=51 Score=27.11 Aligned_cols=52 Identities=19% Similarity=0.112 Sum_probs=43.1
Q ss_pred ccccCeEEEEEEecCCCChHH-HHHHHHHHHHHHHhCCCc-ccCceEEEEEcCC
Q 017096 303 RKVEGGIAAVLKFSGKPTEDI-VHEKEKELHTSLIRDGLR-PKIGCLLARYNDP 354 (377)
Q Consensus 303 ~~~p~~~vaV~~F~G~~te~~-~~~~~~~L~~~L~~~g~~-~~~~~~~A~Yd~P 354 (377)
+++|+.+++..+..|...+.. +.+...+|.+++...++. ....+....||.|
T Consensus 6 ~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 59 (155)
T PF06445_consen 6 VTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLSTDPGPIIGIYYDNP 59 (155)
T ss_dssp EEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCSSSSEEEEEEECC
T ss_pred EEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcccCCCcceeEEeccc
Confidence 467899999999999988777 899999999999998876 4446677778877
No 34
>COG3708 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.63 E-value=98 Score=27.78 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=48.3
Q ss_pred ccccCeEEEEEEecCCCChHHHHHHHHH-HHHHHHhCCCcccCceEEEEEcCCCCCCCCCceeeEEEEecc
Q 017096 303 RKVEGGIAAVLKFSGKPTEDIVHEKEKE-LHTSLIRDGLRPKIGCLLARYNDPGQTWSFIMRNEVLIWLEE 372 (377)
Q Consensus 303 ~~~p~~~vaV~~F~G~~te~~~~~~~~~-L~~~L~~~g~~~~~~~~~A~Yd~P~~t~~~~RrNEV~i~v~~ 372 (377)
.++|+.+.||-..-|...+ +.+.-.. ...++...+....+...+=.||+= -.-.-+=.=||||+|..
T Consensus 89 i~iPa~~YavFt~~G~~~~--i~etw~~I~~~~~~~~~~~~~~~~~fE~Yd~~-~~~~~~~~veIyIpV~k 156 (157)
T COG3708 89 IEIPASTYAVFTHKGPIEE--IQETWQEIWKEWFPSSGYRHAEGPEFEVYDER-DPDSGNGKVEIYIPVKK 156 (157)
T ss_pred EEeccceEEEEEecCCHHH--HHHHHHHHHHhhcccccccccCCCceEEecCC-CCCCCCceEEEEEEEec
Confidence 5889999999999998766 5555444 555678888887765577778652 00234568899999863
No 35
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=39.26 E-value=1.5e+02 Score=26.73 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=50.8
Q ss_pred ccccCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccC-ceEEEEEcCCCCCCCCCceeeEEEEe
Q 017096 303 RKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKI-GCLLARYNDPGQTWSFIMRNEVLIWL 370 (377)
Q Consensus 303 ~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~g~~~~~-~~~~A~Yd~P~~t~~~~RrNEV~i~v 370 (377)
+++|...||..+=.| .+..+.+-.++|.+|.+++|+-+.. ...--.||+|--|++..=|=-+.+-+
T Consensus 6 ~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v 72 (154)
T COG3449 6 IELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLPEQSETLGIYQDDPDTTPAEKCRYDACVVV 72 (154)
T ss_pred EecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCCCCHHHceeeEEEEc
Confidence 467889999999999 7889999999999999999999875 45666788884444444444454444
No 36
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=30.12 E-value=29 Score=28.56 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCCc
Q 017096 327 KEKELHTSLIRDGLR 341 (377)
Q Consensus 327 ~~~~L~~~L~~~g~~ 341 (377)
+..+..+.|.+.|++
T Consensus 24 qL~~~~k~La~~GLk 38 (100)
T KOG4631|consen 24 QLETIQKKLAAKGLK 38 (100)
T ss_pred cHHHHHHHHHHcccc
Confidence 456667788888887
No 37
>PHA00159 endonuclease I
Probab=28.13 E-value=91 Score=27.75 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCcccCceEEEEE-----cCCCCCCCCCceeeEEEEeccc
Q 017096 329 KELHTSLIRDGLRPKIGCLLARY-----NDPGQTWSFIMRNEVLIWLEEF 373 (377)
Q Consensus 329 ~~L~~~L~~~g~~~~~~~~~A~Y-----d~P~~t~~~~RrNEV~i~v~~~ 373 (377)
++-.+.|+..|+.+.=+...-.| +.. +||.|.+.|.|+|+++.+
T Consensus 21 ~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~-YTPDF~LpnGiiiEvKG~ 69 (148)
T PHA00159 21 DKVSKQLEKKGVKFDYELWKIPYVIPASDHK-YTPDFLLPNGIIIETKGL 69 (148)
T ss_pred HHHHHHHHhcCCCeEeeeeeeeeeccCCCCe-eCCceecCCCCEEEeccc
Confidence 44567788888876533333334 344 788888999999999876
No 38
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=24.94 E-value=75 Score=29.78 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=14.0
Q ss_pred EEEEeEeeeccCCCCccchhhHHH
Q 017096 180 FCSHLDLWDSIKNNDYFSLEGFLD 203 (377)
Q Consensus 180 I~~H~DyWD~~~~~~~~s~~~~~~ 203 (377)
..+|+||||-..=...|+-+++.+
T Consensus 32 LafHVDYWDylGWkD~fa~~~~t~ 55 (202)
T PF06764_consen 32 LAFHVDYWDYLGWKDPFASPEFTQ 55 (202)
T ss_dssp EEEE-STT-SSSS--TT--HHHHH
T ss_pred EEecCCcccCCCCCCccCChhHHH
Confidence 468999999988777777666665
No 39
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=24.72 E-value=3.9e+02 Score=21.89 Aligned_cols=59 Identities=8% Similarity=0.054 Sum_probs=38.9
Q ss_pred HHHHhhccccccCCCccccccCCCcEEeCCC-CcccChHHHHHHHHHhhhccccEEEEEEe
Q 017096 77 GFLYDDLPHLFDDQGIDRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKMVFRPAFQLHWV 136 (377)
Q Consensus 77 ~~L~~dy~~lf~~~~~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~~~~~~f~i~~~ 136 (377)
+++++-|..+..+...+..+|+++..|.=+- +.+.|.++....+..|.. ..+..++.++
T Consensus 8 ~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~-~~~~~~i~~~ 67 (119)
T cd00780 8 AFVQQYYSIFDNNREGLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPF-QKTKHKITTV 67 (119)
T ss_pred HHHHHHHHHHhcCHHHHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCC-cceEEEEEEE
Confidence 3444444544433335889999999999777 889999988887655532 1455555554
No 40
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=24.44 E-value=30 Score=33.39 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=15.7
Q ss_pred EEEEeEeeeccCCCCccchhhHHH
Q 017096 180 FCSHLDLWDSIKNNDYFSLEGFLD 203 (377)
Q Consensus 180 I~~H~DyWD~~~~~~~~s~~~~~~ 203 (377)
..+|+||||--.=..-|+=.++.+
T Consensus 75 LsyhVdYWdYlGWkDtlar~enTe 98 (261)
T COG5429 75 LSYHVDYWDYLGWKDTLARKENTE 98 (261)
T ss_pred EEEeecccccCCccccccchhhhH
Confidence 358999999877444444444444
No 41
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=24.31 E-value=2.3e+02 Score=23.15 Aligned_cols=51 Identities=24% Similarity=0.149 Sum_probs=39.7
Q ss_pred cccCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCccc---CceEEEEEcCC
Q 017096 304 KVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPK---IGCLLARYNDP 354 (377)
Q Consensus 304 ~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~g~~~~---~~~~~A~Yd~P 354 (377)
.+|+..++..+..|...++.+.+...+|.+++...+.... +..+...|+.|
T Consensus 6 ~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (158)
T smart00871 6 ELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLPIGPSGPPYGVYYDDP 59 (158)
T ss_pred EcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCCCCCCccEEEEECCCC
Confidence 5678889999999998765677888889999988886543 35677777887
No 42
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=22.55 E-value=2.6e+02 Score=25.04 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=41.2
Q ss_pred ccccCeEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCcccCceEEEEEcCC
Q 017096 303 RKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDP 354 (377)
Q Consensus 303 ~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~g~~~~~~~~~A~Yd~P 354 (377)
.++++..|+..++-|- .+..+.+-..+|.+.|...|..+.+.+.+-.|-.|
T Consensus 8 ~~~~~~~v~~ir~~~~-~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 58 (153)
T COG4978 8 KKLEEIKVVGIRFTGI-PERLIEQVYSELCNFLKSNGIIPIGPYGATIFHEP 58 (153)
T ss_pred EeecceeEEEEEEecC-cHHHHHHHHHHHHHHHhhcCccccCCceEEEEeee
Confidence 3678899999999998 78999999999999999999877765544444444
Done!