BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017098
         (377 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
 pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
           Complex With Histone H3-K(Ac)14
 pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
           Histone H3- K(Prop)23
 pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
           Histone H3- K(Buty)14
          Length = 131

 Score = 37.4 bits (85), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD GTI   LEN   Y N+++  +D   ++ NC  YN  GD I+ + + ++K F++
Sbjct: 68  MDMGTIKKRLENNY-YWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQ 122


>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
           Bromodomain Containing Protein 4 (Brd4)
 pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With The Inhibitor Jq1
 pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With Ibet Inhibitor
 pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           With The Inhibitor Gw841819x
 pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Dihydro-Quinazolin Ligand
 pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A 3,5-Dimethylisoxazol Ligand
 pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With I-Bet151(Gsk1210151a)
 pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With I-Bet151(Gsk1210151a)
 pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With Alprazolam
 pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With Midazolam
 pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With Midazolam
 pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With Midazolam
 pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With Midazolam
 pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Benzo-Triazepine Ligand (Bzt-7)
 pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
           Morpholine-4-Sulfonyl)-1,2,3,
           4-Tetrahydroquinazolin-2-One
 pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Diacetylated Histone 4 Peptide
           (H4k5ack8ac)
 pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Diacetylated Histone 4 Peptide
           (H4k16ack20ac)
 pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Diacetylated Histone 4 Peptide
           (H4k12ack16ac)
 pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Diacetylated Histone 4 Peptide
           (H4k8ack12ac)
 pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Diacetylated Histone 4 Peptide
           (H4k8ack12ac)
 pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Diacetylated Histone 4 Peptide
           (H4k8ack12ac)
 pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Diacetylated Histone 4 Peptide
           (H4k8ack12ac)
 pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With The Inhibitor Pfi-1
 pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With Ms417 Inhibitor
 pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Isoxazolylbenzimidazole Ligand
 pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Quinazolin Ligand
 pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Quinazolin Ligand
 pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Quinazolin Ligand
 pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A 3,5-dimethylisoxazol Ligand
 pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A 3,5-dimethylisoxazol Ligand
          Length = 127

 Score = 37.0 bits (84), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD GTI   LEN   Y N+++  +D   ++ NC  YN  GD I+ + + ++K F++
Sbjct: 64  MDMGTIKKRLENNY-YWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQ 118


>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
           In Complex With A Quinazoline Ligand
          Length = 127

 Score = 37.0 bits (84), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD GTI   LEN   Y N+++  +D   ++ NC  YN  GD I+ + + ++K F++
Sbjct: 64  MDMGTIKKRLENNY-YWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQ 118


>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
           3,4-dihydro-3-methyl-2(1h)- Quinazolinon
          Length = 145

 Score = 37.0 bits (84), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD GTI   LEN   Y N+++  +D   ++ NC  YN  GD I+ + + ++K F++
Sbjct: 84  MDMGTIKKRLENN-YYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQ 138


>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
 pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
 pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
 pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
 pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
 pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
 pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
 pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
          Length = 135

 Score = 34.7 bits (78), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 1  MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSK 39
          MDF T+   LE  G Y N  +  +D + I +NC KYN++
Sbjct: 54 MDFATMRKRLEAQG-YKNLHEFEEDFDLIIDNCMKYNAR 91


>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
           Bromodomain Adjacent To Zinc Finger Domain 2b
          Length = 112

 Score = 34.7 bits (78), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLW 58
           MDF TI   L +G +Y N E    DV  +++NC  +N     I      ++K F K W
Sbjct: 51  MDFSTIREKLSSG-QYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 107


>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
 pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
           Complex With Histone H4k5ac Peptide
          Length = 121

 Score = 34.7 bits (78), Expect = 0.096,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 16/86 (18%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMA 60
           MDF T+  NLE   +Y+N +D  +D   I  NC KYN+K                 ++  
Sbjct: 48  MDFFTMKQNLE-AYRYLNFDDFEEDFNLIVSNCLKYNAKD---------------TIFYR 91

Query: 61  AGLYTEQSSGSAVYQKFQRSKKMPDG 86
           A +   +  G+ + Q  ++++KM  G
Sbjct: 92  AAVRLREQGGAVLRQARRQAEKMGSG 117


>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
           Histone H4 Peptide.
 pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
           Histone H4 Peptide
          Length = 120

 Score = 34.3 bits (77), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD  TI   LEN   Y  + +  +D   ++ NC  YN  GD I+ + + ++K FM+
Sbjct: 57  MDLNTIKKRLENK-YYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLFMQ 111


>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
           Bromodomain Containing Protein, Testis Specific (Brdt)
 pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
           Bromodomain Containing Protein, Testis Specific (Brdt)
 pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
           Bromodomain Containing Protein, Testis Specific (Brdt)
 pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
           In Complex With The Inhibitor Jq1
 pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
           In Complex With The Inhibitor Jq1
          Length = 119

 Score = 34.3 bits (77), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD  TI   LEN   Y  + +  +D   ++ NC  YN  GD I+ + + ++K FM+
Sbjct: 56  MDLNTIKKRLENK-YYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLFMQ 110


>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
           Finger Domain 2b (Baz2b)
 pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
           Complex With A Triazolo Ligand
 pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
           Complex With 1-
           [7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
           (gsk2833282a)
 pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
           Complex With 1-
           [7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
           yl]ethanone (gsk2834113a)
 pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
           Complex With 1-
           {1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
           yl}ethanone (gsk2847449a)
 pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
           Complex With 1-
           {1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
           yl}ethanone (gsk2838097a)
          Length = 117

 Score = 33.9 bits (76), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLW 58
           MDF TI   L +G +Y N E    DV  +++NC  +N     I      ++K F K W
Sbjct: 54  MDFSTIREKLSSG-QYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 110


>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
           3 (Brd3)
 pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
           3 (Brd3)
 pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
           In Complex With The Inhibitor Jq1
          Length = 123

 Score = 33.1 bits (74), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD GTI   LEN   Y ++ +  +D   ++ NC  YN   D I+ + + ++K F++
Sbjct: 60  MDMGTIKKRLENN-YYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQ 114


>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
           Nf-Kb-K310ac Peptide
          Length = 128

 Score = 32.7 bits (73), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           MD  TI S LE   +Y ++++   DV  ++ NC KYN     ++ + ++++  F
Sbjct: 66  MDMSTIKSKLE-AREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 118


>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
           Bromodomain Containing Protein 4 (Brd4)
 pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
           With The Inhibitor Gw841819x
 pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
           With The Inhibitor Gw841819x
          Length = 130

 Score = 32.7 bits (73), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           MD  TI S LE   +Y ++++   DV  ++ NC KYN     ++ + ++++  F
Sbjct: 68  MDMSTIKSKLE-AREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 120


>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
           With The Inhibitor Gw841819x
 pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
           With The Inhibitor Gw841819x
 pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
           With The Inhibitor Gw841819x
 pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
           With The Inhibitor Gsk525762 (Ibet)
 pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
           With The Inhibitor Gsk525762 (Ibet)
 pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
           With The Inhibitor Gsk525762 (Ibet)
 pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
           Tbutyl-Phenyl-Amino-
           Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
 pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
           Tbutyl-Phenyl-Amino-
           Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
 pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
           Tbutyl-Phenyl-Amino-
           Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
          Length = 153

 Score = 32.7 bits (73), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD GTI   LEN   Y  + +  +D   ++ NC  YN   D I+ + + ++K F++
Sbjct: 75  MDMGTIKRRLENN-YYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQ 129


>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
           3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
 pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
           3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
 pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
           3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
 pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
           1-Methylpyrrolidin-2-One
 pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
           1-Methylpyrrolidin-2-One
 pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
           1-Methylpyrrolidin-2-One
 pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
           1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
 pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
           1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
 pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
           1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
 pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
           3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
 pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
           3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
 pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
           3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
 pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
           Hydroxyphenyl)acetamide
 pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
           Hydroxyphenyl)acetamide
 pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
           Hydroxyphenyl)acetamide
 pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
           N-Cyclopentyl-5-(
           3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
           Sulfonamide
 pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
           N-Cyclopentyl-5-(
           3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
           Sulfonamide
 pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
           N-Cyclopentyl-5-(
           3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
           Sulfonamide
 pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
           N-Cyclopropyl-5-(
           3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
           Sulfonamide
 pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
           N-Cyclopropyl-5-(
           3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
           Sulfonamide
 pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
           N-Cyclopropyl-5-(
           3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
           Sulfonamide
 pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
           Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
 pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
           Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
 pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
           Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
 pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With  3,5 Dimethyl-4-
           Phenyl-1,2-Oxazole
 pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With  3,5 Dimethyl-4-
           Phenyl-1,2-Oxazole
 pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With  3,5 Dimethyl-4-
           Phenyl-1,2-Oxazole
 pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
          Length = 154

 Score = 32.3 bits (72), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD GTI   LEN   Y  + +  +D   ++ NC  YN   D I+ + + ++K F++
Sbjct: 75  MDMGTIKRRLENN-YYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQ 129


>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
           Bromodomain Containing Protein 3
          Length = 138

 Score = 32.0 bits (71), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD GTI   LEN   Y ++ +  +D   ++ NC  YN   D I+ + + ++K F++
Sbjct: 64  MDMGTIKKRLENNY-YWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQ 118


>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
          Length = 128

 Score = 32.0 bits (71), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMK 56
           MD GTI   LEN   Y ++ +  +D   ++ NC  YN   D I+ + + ++K F++
Sbjct: 62  MDMGTIKKRLENN-YYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQ 116


>pdb|1EJ6|B Chain B, Reovirus Core
 pdb|1EJ6|C Chain C, Reovirus Core
 pdb|2CSE|V Chain V, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|W Chain W, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1275

 Score = 32.0 bits (71), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 263 GLAQSKIGERLGEESMRQSEPGKPENSGG-----IQTHSDEHDEEAVAVQKQAHKNSQEW 317
           G+A  +      E  M+ ++ G P+  G      +  HS+  DE   A QKQA    +  
Sbjct: 58  GIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSK 117

Query: 318 AEKAKLYSSFNSENPM 333
           A+     +  N+ N +
Sbjct: 118 AQVTYSDTGINNANEL 133


>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
 pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
          Length = 120

 Score = 32.0 bits (71), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           MD  TI S LE+  +Y ++++   DV  ++ NC KYN     ++ + ++++  F
Sbjct: 55  MDMSTIKSKLESR-EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 107


>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
          Length = 114

 Score = 31.2 bits (69), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1  MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
          MD  TI S LE   +Y ++++   DV  ++ NC KYN     ++ + ++++  F
Sbjct: 47 MDMSTIKSKLE-AREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 99


>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
           In Complex With The Inhibitor Jq1
          Length = 114

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           MD  T+   +EN   Y ++++   DV  ++ NC KYN     ++ + ++++  F
Sbjct: 53  MDLSTVKRKMENRD-YRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVF 105


>pdb|3O6X|A Chain A, Crystal Structure Of The Type Iii Glutamine Synthetase
           From Bacteroides Fragilis
 pdb|3O6X|B Chain B, Crystal Structure Of The Type Iii Glutamine Synthetase
           From Bacteroides Fragilis
 pdb|3O6X|C Chain C, Crystal Structure Of The Type Iii Glutamine Synthetase
           From Bacteroides Fragilis
 pdb|3O6X|D Chain D, Crystal Structure Of The Type Iii Glutamine Synthetase
           From Bacteroides Fragilis
 pdb|3O6X|E Chain E, Crystal Structure Of The Type Iii Glutamine Synthetase
           From Bacteroides Fragilis
 pdb|3O6X|F Chain F, Crystal Structure Of The Type Iii Glutamine Synthetase
           From Bacteroides Fragilis
          Length = 729

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 29  IWENCNKYNSKGDYILDLMKRVKK 52
           I+ENCN  N     ++DLMKR+ +
Sbjct: 297 IFENCNLANDHNQLVMDLMKRIAR 320


>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
          Length = 116

 Score = 30.0 bits (66), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 1  MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
          MD  T+   +EN   Y ++++   DV  ++ NC KYN     ++ + ++++  F
Sbjct: 47 MDLSTVKRKMENR-DYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVF 99


>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
           Brd2 Protein
 pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
           Complexed With The Acetylated Histone H4 Peptide
 pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
           Complexed With The Acetylated Histone H4 Peptide
 pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
           Complexed With The Acetylated Histone H4 Peptide
 pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
           Complexed With The Acetylated Histone H4 Peptide
          Length = 112

 Score = 29.6 bits (65), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           MD  T+   +EN   Y ++++   DV  ++ NC KYN     ++ + ++++  F
Sbjct: 51  MDLSTVKRKMENR-DYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVF 103


>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
           Histone H3 Peptide
 pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
           Histone H3 Peptide
          Length = 126

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           MD GTI   ++N  +Y ++ +   DV  ++ NC KYN     ++ + + ++  F
Sbjct: 60  MDLGTIKGKMDNQ-EYKDAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVF 112


>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
          Length = 121

 Score = 29.3 bits (64), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           MD  T+   LE+  KY   ED   D   ++ NC  YN +         R++K F
Sbjct: 54  MDLSTMEIKLESN-KYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFF 106


>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
           Poly-Bromodomain Containing Protein 1 (Pb1)
          Length = 116

 Score = 28.9 bits (63), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           +D  TI   ++NG  Y +   + KD++ + +N   YN  G  +      +KK F
Sbjct: 53  IDLKTIAQRIQNG-SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 105


>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
 pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
          Length = 116

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 1  MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYN 37
          MD  ++   L NGG Y   E+   D++ ++ NC KYN
Sbjct: 57 MDISSMEKKL-NGGLYCTKEEFVNDMKTMFRNCRKYN 92


>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
           Polybromo
 pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
           Polybromo
          Length = 120

 Score = 28.5 bits (62), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           +D  TI   ++NG  Y +   + KD++ + +N   YN  G  +      +KK F
Sbjct: 55  IDLKTIAQRIQNG-SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 107


>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
           Polybr Complex With An Acetylated Peptide From Histone 3
          Length = 121

 Score = 28.5 bits (62), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           +D  TI   ++NG  Y +   + KD++ + +N   YN  G  +      +KK F
Sbjct: 56  IDLKTIAQRIQNG-SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 108


>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
           Bromodomain Containing Protein 3 (Brd3)
 pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
           Bromodomain Containing Protein 3 (Brd3)
 pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
           Bromodomain Containing Protein 3 (Brd3)
 pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
           Bromodomain Containing Protein 3 (Brd3)
 pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
           In Complex With The Inhibitor Jq1
          Length = 113

 Score = 28.1 bits (61), Expect = 8.5,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           MD  T+   ++ G +Y +++    DV  ++ NC KYN     ++ + ++++  F
Sbjct: 53  MDLSTVKRKMD-GREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 105


>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
           Bromodomain-Containing Protein 3
          Length = 117

 Score = 28.1 bits (61), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 1   MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNF 54
           MD  T+   ++ G +Y +++    DV  ++ NC KYN     ++ + ++++  F
Sbjct: 58  MDLSTVKRKMD-GREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,667,399
Number of Sequences: 62578
Number of extensions: 345645
Number of successful extensions: 563
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 40
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)