BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017098
         (377 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q28139|NCKX1_BOVIN Sodium/potassium/calcium exchanger 1 OS=Bos taurus GN=SLC24A1 PE=1
           SV=2
          Length = 1216

 Score = 36.6 bits (83), Expect = 0.36,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 19/141 (13%)

Query: 146 RRKREREENARI--AQGQTDVVETQEPNQEESSLGE----SARGDDSSSDMGE---SQNL 196
           R  +++EE   I  A+         +P +E + L E     A   D   D  E   SQ +
Sbjct: 680 RPSKDKEEETLIPEAKATPQAKAESKPEEEPAKLPEVTVTPAPAPDVKGDQEEDPGSQGV 739

Query: 197 DADAEVEGKRE----EVKGESAKQEYSHMEVKHEEEQEEEEDDEEDEEEEDEEGGDEENE 252
            A+AE  G+R     E   E    E S  +     E E + ++E + +   E  GD+E+E
Sbjct: 740 GAEAENTGERTGGEAEAPAEGENGERSGGDAALGGESEGKAENESEGDIPAERRGDDEDE 799

Query: 253 IDMQKKG------EGEGLAQS 267
            ++Q +G      E EG  Q+
Sbjct: 800 GEIQAEGGEVKGDEDEGEIQA 820


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.126    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,353,663
Number of Sequences: 539616
Number of extensions: 7297786
Number of successful extensions: 172624
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2532
Number of HSP's successfully gapped in prelim test: 2414
Number of HSP's that attempted gapping in prelim test: 69461
Number of HSP's gapped (non-prelim): 35720
length of query: 377
length of database: 191,569,459
effective HSP length: 119
effective length of query: 258
effective length of database: 127,355,155
effective search space: 32857629990
effective search space used: 32857629990
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)