Query 017098
Match_columns 377
No_of_seqs 124 out of 1093
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 08:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d7c_A General control of amin 99.7 8.7E-17 3E-21 132.7 9.1 64 1-65 48-111 (112)
2 3g0l_A Hwalp4, bromodomain adj 99.6 3.8E-16 1.3E-20 129.5 8.2 60 1-61 54-113 (117)
3 2dat_A Possible global transcr 99.6 3.7E-16 1.3E-20 131.2 8.1 61 1-62 60-120 (123)
4 2ouo_A HUNK1 protein, bromodom 99.6 3.9E-16 1.3E-20 132.6 8.2 61 1-62 68-128 (130)
5 3mb4_A Protein polybromo-1; PB 99.6 4.6E-16 1.6E-20 130.6 8.5 60 1-61 62-121 (124)
6 3tlp_A Protein polybromo-1; PB 99.6 5E-16 1.7E-20 133.9 8.6 67 1-68 72-138 (150)
7 2oss_A HUNK1 protein, bromodom 99.6 4.4E-16 1.5E-20 131.8 7.7 61 1-62 64-124 (127)
8 3jvl_A Bromodomain-containing 99.6 4.9E-16 1.7E-20 129.3 7.9 61 1-62 55-115 (120)
9 2grc_A Probable global transcr 99.6 6.1E-16 2.1E-20 131.0 8.3 61 1-62 59-119 (129)
10 3ljw_A Protein polybromo-1; al 99.6 5.1E-16 1.8E-20 129.7 7.7 61 1-62 55-115 (120)
11 4alg_A Bromodomain-containing 99.6 7.3E-16 2.5E-20 134.6 8.7 61 1-62 75-135 (154)
12 1e6i_A Transcriptional activat 99.6 5.8E-16 2E-20 129.9 7.8 63 1-64 54-116 (121)
13 2i7k_A Bromodomain-containing 99.6 7.2E-16 2.5E-20 129.2 7.8 62 1-63 49-110 (117)
14 3iu5_A Protein polybromo-1; PB 99.6 8.8E-16 3E-20 127.3 8.3 60 1-61 52-111 (116)
15 3nxb_A CAT eye syndrome critic 99.6 6.5E-16 2.2E-20 127.9 7.3 59 1-60 57-115 (116)
16 3k2j_A Protein polybromo-1; PB 99.6 1E-15 3.5E-20 130.4 8.2 61 1-62 64-124 (130)
17 3p1f_A CREB-binding protein; s 99.6 1.3E-15 4.5E-20 126.6 8.2 60 1-61 55-114 (119)
18 2d9e_A Peregrin; four-helix bu 99.6 1.7E-15 5.7E-20 127.3 8.3 60 1-61 48-107 (121)
19 3mqm_A Probable histone-lysine 99.6 1.1E-15 3.9E-20 128.3 7.2 60 1-61 56-115 (126)
20 3fkm_X Signaling protein; brom 99.6 1.3E-15 4.4E-20 134.5 7.6 62 1-63 64-125 (166)
21 2yyn_A Transcription intermedi 99.6 3E-15 1E-19 127.9 9.1 62 1-62 60-122 (135)
22 3mb3_A PH-interacting protein; 99.6 2.6E-15 8.9E-20 127.5 8.2 60 1-61 62-122 (135)
23 3q2e_A Bromodomain and WD repe 99.6 3.5E-15 1.2E-19 125.1 8.2 61 1-62 51-112 (123)
24 3rcw_A Bromodomain-containing 99.6 4.1E-15 1.4E-19 126.3 8.2 60 1-61 54-113 (135)
25 3hme_A Bromodomain-containing 99.6 3.5E-15 1.2E-19 125.5 7.1 61 1-62 54-114 (123)
26 2ri7_A Nucleosome-remodeling f 99.6 3.3E-15 1.1E-19 130.3 7.1 60 1-61 113-172 (174)
27 3uv4_A Second bromodomain of h 99.5 8.7E-15 3E-19 128.6 7.9 61 1-62 71-131 (158)
28 3o36_A Transcription intermedi 99.5 1.6E-14 5.6E-19 127.6 8.5 60 1-61 121-182 (184)
29 2ro1_A Transcription intermedi 99.5 1.1E-14 3.9E-19 130.6 7.1 62 1-63 115-178 (189)
30 3uv5_A Transcription initiatio 99.4 1.4E-13 4.9E-18 128.3 8.4 61 1-62 178-238 (265)
31 2r0y_A Chromatin structure-rem 99.4 1.3E-13 4.5E-18 132.3 7.7 60 1-61 204-263 (311)
32 2r10_A Chromatin structure-rem 99.4 1.8E-13 6.2E-18 133.3 7.7 60 1-61 254-313 (361)
33 3dai_A ATPase family AAA domai 99.4 4E-13 1.4E-17 113.7 8.3 58 1-59 51-112 (130)
34 3uv5_A Transcription initiatio 99.4 3.1E-13 1.1E-17 126.1 7.9 60 1-61 55-114 (265)
35 2dkw_A Hypothetical protein KI 99.4 3.9E-13 1.3E-17 114.9 7.8 58 1-59 48-109 (131)
36 3aad_A Transcription initiatio 99.4 3.2E-13 1.1E-17 128.1 7.7 60 1-61 211-270 (292)
37 3u5n_A E3 ubiquitin-protein li 99.4 3.3E-13 1.1E-17 121.6 7.0 61 1-62 121-201 (207)
38 3aad_A Transcription initiatio 99.3 7.9E-13 2.7E-17 125.4 4.2 60 1-61 88-147 (292)
39 3iu6_A Protein polybromo-1; PB 99.2 1.4E-11 4.9E-16 108.6 8.3 60 1-61 50-109 (147)
40 2r0y_A Chromatin structure-rem 99.2 6.4E-12 2.2E-16 120.7 6.4 58 1-61 71-129 (311)
41 2r10_A Chromatin structure-rem 99.2 7.8E-12 2.7E-16 121.8 5.8 59 1-61 121-179 (361)
42 3lqh_A Histone-lysine N-methyl 99.2 3.6E-11 1.2E-15 108.6 8.2 64 1-65 105-168 (183)
No 1
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.68 E-value=8.7e-17 Score=132.67 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=62.5
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAGLYT 65 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkigL~~ 65 (377)
|||+||++||.+| .|.++.+|..||+|||.||++||++++.++.+|..|++.|++.|.+++++.
T Consensus 48 mdL~tI~~kl~~~-~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~~ 111 (112)
T 3d7c_A 48 IDLKTMTERLRSR-YYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKEGGLID 111 (112)
T ss_dssp CCHHHHHHHHHTT-CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCHHHHHHHHcCC-CCcCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCcC
Confidence 8999999999998 999999999999999999999999999999999999999999999999874
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.64 E-value=3.8e-16 Score=129.51 Aligned_cols=60 Identities=33% Similarity=0.582 Sum_probs=58.6
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|++.|.++
T Consensus 54 mdl~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 113 (117)
T 3g0l_A 54 MDFSTIREKLSSG-QYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDT 113 (117)
T ss_dssp CCHHHHHHHHHTT-CCCSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 99999999999999999999999999999999999999999999875
No 3
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=131.20 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=59.2
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||.+++.|+.+|..|+++|+++|++++
T Consensus 60 mdL~tI~~kl~~~-~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 60 VDFKKIKERIRNH-KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp CCHHHHHHHHTTT-CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999998 999999999999999999999999999999999999999999999764
No 4
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.63 E-value=3.9e-16 Score=132.56 Aligned_cols=61 Identities=26% Similarity=0.499 Sum_probs=59.3
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|++.|.+++
T Consensus 68 mDL~tI~~kl~~~-~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 68 MDMSTIKSKLEAR-EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999998 999999999999999999999999999999999999999999999764
No 5
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.63 E-value=4.6e-16 Score=130.61 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||..+ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|++.|.++
T Consensus 62 mdL~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 121 (124)
T 3mb4_A 62 MDMEKIRSHMMAN-KYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDL 121 (124)
T ss_dssp CCHHHHHHHHHTT-CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 99999999999999999999999999999999999999999999976
No 6
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=133.94 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=61.8
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAGLYTEQS 68 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkigL~~Eq~ 68 (377)
|||+||++||..+ .|.++.+|+.||+|||.||++||++++.||.+|..|+++|+++|.++...++..
T Consensus 72 mdL~tI~~kl~~~-~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d 138 (150)
T 3tlp_A 72 MDLKIIEHNIRND-KYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDD 138 (150)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChh
Confidence 9999999999998 999999999999999999999999999999999999999999999998777643
No 7
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.63 E-value=4.4e-16 Score=131.82 Aligned_cols=61 Identities=33% Similarity=0.543 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.|+.+|..|++.|++.|.+++
T Consensus 64 mdL~tI~~kl~~~-~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 64 MDMGTIKKRLENN-YYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 8999999999998 999999999999999999999999999999999999999999998764
No 8
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.63 E-value=4.9e-16 Score=129.33 Aligned_cols=61 Identities=26% Similarity=0.505 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|++.|.++.
T Consensus 55 mdl~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 55 MDMSTIKSKLESR-EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp CCHHHHHHHHHTT-CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 8999999999998 999999999999999999999999999999999999999999999775
No 9
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.62 E-value=6.1e-16 Score=131.03 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=59.3
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|++.|.++.
T Consensus 59 mdL~tI~~kl~~~-~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 119 (129)
T 2grc_A 59 VDFKKIKERIRNH-KYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIE 119 (129)
T ss_dssp CCHHHHHHHHHTT-CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999998 999999999999999999999999999999999999999999999764
No 10
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.62 E-value=5.1e-16 Score=129.66 Aligned_cols=61 Identities=25% Similarity=0.423 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||..+ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|++.|.++.
T Consensus 55 mdL~tI~~kl~~~-~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 55 IDLKTIAQRIQNG-SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp CCHHHHHHHHHHT-CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999998 999999999999999999999999999999999999999999999864
No 11
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.62 E-value=7.3e-16 Score=134.60 Aligned_cols=61 Identities=30% Similarity=0.489 Sum_probs=59.5
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||.++ .|.++.+|+.||+|||.||++||.+++.|+.+|..|+++|++.|.++.
T Consensus 75 MDL~tI~~kl~~~-~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 75 MDMGTIKRRLENN-YYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999998 999999999999999999999999999999999999999999999875
No 12
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.62 E-value=5.8e-16 Score=129.91 Aligned_cols=63 Identities=29% Similarity=0.450 Sum_probs=60.6
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAGLY 64 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkigL~ 64 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|++.|..++-|
T Consensus 54 mdL~tI~~kl~~~-~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p~~ 116 (121)
T 1e6i_A 54 MDLSTMEIKLESN-KYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEY 116 (121)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 8999999999998 99999999999999999999999999999999999999999999987544
No 13
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.61 E-value=7.2e-16 Score=129.22 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=59.9
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAGL 63 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkigL 63 (377)
|||+||++||.+| .|.++.+|..||+|||.||++||+++|.|+.+|..|++.|+++|....+
T Consensus 49 MDL~tI~~kl~~~-~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 49 MDFSTMKEKIKNN-DYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp CCHHHHHHHHTTT-SCCSHHHHHHHHHHHHHHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 9999999999999999999999999999999999999999999997654
No 14
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.61 E-value=8.8e-16 Score=127.35 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=58.6
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|++.+.++
T Consensus 52 mdL~tI~~kl~~~-~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l 111 (116)
T 3iu5_A 52 IDLMKIQQKLKME-EYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEF 111 (116)
T ss_dssp CCHHHHHHHHHTT-CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 99999999999999999999999999999999999999999999876
No 15
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.61 E-value=6.5e-16 Score=127.94 Aligned_cols=59 Identities=24% Similarity=0.524 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMA 60 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kk 60 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|++.|.+
T Consensus 57 mdl~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 57 MDISSMEKKLNGG-LYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 8999999999998 9999999999999999999999999999999999999999999874
No 16
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=130.38 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||+++|.|+.+|..|+++|++.|.++.
T Consensus 64 MdL~tI~~kL~~~-~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 124 (130)
T 3k2j_A 64 ISLQQIRTKLKNQ-EYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELA 124 (130)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 999999999999999999999999999999999999999999998763
No 17
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.60 E-value=1.3e-15 Score=126.58 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=58.2
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||..+ .|.++.+|..||+|||.||++||++++.|+.+|..|++.|++.|..+
T Consensus 55 mdl~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 114 (119)
T 3p1f_A 55 MDLSTIKRKLDTG-QYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPV 114 (119)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 99999999999999999999999999999999999999999999764
No 18
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=127.33 Aligned_cols=60 Identities=33% Similarity=0.442 Sum_probs=58.2
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.++.+|..|++.|+++|.++
T Consensus 48 mdL~tI~~kl~~~-~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 48 MDFFTMKQNLEAY-RYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp CCHHHHHHHHHTT-CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999865
No 19
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=128.33 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.++.+|..|+++|++.|.++
T Consensus 56 mdL~tI~~kl~~~-~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 115 (126)
T 3mqm_A 56 LDLITIEKQILTG-YYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEA 115 (126)
T ss_dssp CCHHHHHHHHHHT-CCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 99999999999999999999999999999999999999999999865
No 20
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.59 E-value=1.3e-15 Score=134.45 Aligned_cols=62 Identities=27% Similarity=0.535 Sum_probs=60.1
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAGL 63 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkigL 63 (377)
|||+||++||..+ .|.++.+|+.||+|||.||++||++++.|+.+|..|+++|++.|.++++
T Consensus 64 mDL~tI~~kL~~~-~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~ 125 (166)
T 3fkm_X 64 MSFSCIKTKLKKG-QYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGY 125 (166)
T ss_dssp CCHHHHHHHHHHT-CCCSHHHHHHHHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999998 9999999999999999999999999999999999999999999998763
No 21
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=127.91 Aligned_cols=62 Identities=24% Similarity=0.419 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhCC-CCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENG-GKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G-~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||..+ ..|.++.+|..||+|||.||++||.+++.|+.+|..|+++|+++|.++.
T Consensus 60 mDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 60 MDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp CCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999982 2899999999999999999999999999999999999999999999874
No 22
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=127.46 Aligned_cols=60 Identities=28% Similarity=0.467 Sum_probs=58.2
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCC-CCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSK-GDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~p-gS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||..+ .|.++.+|..||+|||.||++||++ ++.||.+|..|+++|++.|..+
T Consensus 62 mdl~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~ 122 (135)
T 3mb3_A 62 MDFATVRETLEAG-NYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSV 122 (135)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 9999999999999999999999998 9999999999999999999865
No 23
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=125.11 Aligned_cols=61 Identities=26% Similarity=0.469 Sum_probs=58.6
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCC-CCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSK-GDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~p-gS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||..+ .|.++.+|+.||+|||.||++||++ ++.|+.+|..|+++|++.|.++.
T Consensus 51 mdL~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~ 112 (123)
T 3q2e_A 51 MDFGTVRETLDAG-NYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKIS 112 (123)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 9999999999999999999999996 99999999999999999999763
No 24
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=126.27 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=58.2
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.+|.+|..|++.|.+.|..+
T Consensus 54 mdL~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 54 MDFATMRKRLEAQ-GYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 99999999999999999999999999999999999999999999865
No 25
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.56 E-value=3.5e-15 Score=125.45 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||++++.|+.+|..|.+.|.+.|.+..
T Consensus 54 mdL~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 54 MDFGTMKDKIVAN-EYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp CCHHHHHHHHHTT-CCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 999999999999999999999999999999999999999999987654
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.56 E-value=3.3e-15 Score=130.25 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=58.2
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||+++ .|.++.+|..||+|||.||++||++++.|+.+|..|+++|+++|.++
T Consensus 113 mdL~tI~~kl~~~-~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 113 MDLATMEERVQRR-YYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp CCHHHHHHHHHTT-CCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999998 99999999999999999999999999999999999999999998765
No 27
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.54 E-value=8.7e-15 Score=128.61 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||..+ .|.++.+|+.||+|||.||++||++++.|+.+|..|.+.|.+.|.++.
T Consensus 71 MDL~tI~~kl~~~-~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 71 MDLETIRKNISKH-KYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred cCHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 999999999999999999999999999999999999999999998753
No 28
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.53 E-value=1.6e-14 Score=127.56 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=58.1
Q ss_pred CCHHHHHHHhhC--CCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLEN--GGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~--G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||.. + .|.++.+|+.||+|||.||++||++++.|+.+|..|+++|+++|.++
T Consensus 121 mdL~tI~~kl~~~~~-~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 121 MDLSTIKKRLQEDYS-MYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp CCHHHHHHHHHSTTC-SCCSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 5 89999999999999999999999999999999999999999999876
No 29
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=130.62 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhCCC--CCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 017098 1 MDFGTICSNLENGG--KYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAGL 63 (377)
Q Consensus 1 MDLsTIKkKLe~G~--kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkigL 63 (377)
|||+||++||.++. .|.++.+|+.||+|||.||++|| +++.|+.+|..|+++|+++|.++..
T Consensus 115 MDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 115 LDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFG 178 (189)
T ss_dssp CCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999942 89999999999999999999999 5888899999999999999998753
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.44 E-value=1.4e-13 Score=128.32 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAG 62 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkig 62 (377)
|||+||++||..+ .|.++.+|..||+|||.||++||++++.||.+|..|++.|.+.|.++.
T Consensus 178 mdl~tI~~kl~~~-~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 178 MDLETIRKNISKH-KYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred ccHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 999999999999999999999999999999999999999999998753
No 31
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.43 E-value=1.3e-13 Score=132.31 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||.++ .|.++.+|..||+|||.||++||.++|.||.+|..|+++|+++|.+.
T Consensus 204 MDL~tI~~kl~~~-~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 263 (311)
T 2r0y_A 204 MALSIVKQNLEIG-QYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 263 (311)
T ss_dssp CCHHHHHHHHHHT-CCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 99999999999999999999999999999999999999999999874
No 32
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.42 E-value=1.8e-13 Score=133.31 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||..+ .|.++.+|..||+|||.||++||.+++.||.+|..|+++|+++|.+.
T Consensus 254 mDL~tI~~kl~~~-~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 313 (361)
T 2r10_A 254 MALSIVKQNLEIG-QYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 313 (361)
T ss_dssp CCHHHHHHHHHHT-CCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 99999999999999999999999999999999999999999999874
No 33
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.41 E-value=4e-13 Score=113.70 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=53.9
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHH----HHHHHHHHHHHHHHHH
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYI----LDLMKRVKKNFMKLWM 59 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~I----y~~Ak~LEk~FeK~~k 59 (377)
|||+||++||..+ .|.++.+|..||+|||.||++||++++.+ +..|..|+..|...+.
T Consensus 51 mdL~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 51 MDLSSVISKIDLH-KYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 99999999999999999999999999866 6888899988888775
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.40 E-value=3.1e-13 Score=126.07 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||..+ .|.++.+|+.||+|||.||++||++++.|+.+|..|.++|.+.|.++
T Consensus 55 mdL~tI~~kl~~~-~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~ 114 (265)
T 3uv5_A 55 MDLQTLRENVRKR-LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEK 114 (265)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHcC-CCCCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 99999999999999999999999999999999999999999999875
No 35
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=114.87 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=54.1
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCH----HHHHHHHHHHHHHHHHH
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDY----ILDLMKRVKKNFMKLWM 59 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~----Iy~~Ak~LEk~FeK~~k 59 (377)
|||+||++||..+ .|.++.+|..||+|||.||++||+++|. |+..|..|+..|...++
T Consensus 48 mDL~tI~~kl~~~-~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 48 MDLSTVITKIDKH-NYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCHHHHHHHHHTT-CCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 9999999999999999999999999984 57889999999988775
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=128.05 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=58.3
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||..+ .|.++.+|..||+|||.||++||++++.||.+|..|++.|.+.|..+
T Consensus 211 mdL~tI~~kl~~~-~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 270 (292)
T 3aad_A 211 MDLETIRKNISKH-KYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 270 (292)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999998865
No 37
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.39 E-value=3.3e-13 Score=121.58 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhC---CCCCCCHHHHHHHHHHHHhhhhccCC-----------------CCCHHHHHHHHHHHHHHHHHHH
Q 017098 1 MDFGTICSNLEN---GGKYMNSEDVYKDVEYIWENCNKYNS-----------------KGDYILDLMKRVKKNFMKLWMA 60 (377)
Q Consensus 1 MDLsTIKkKLe~---G~kYkSveEF~sDVrLIFsNC~kYN~-----------------pgS~Iy~~Ak~LEk~FeK~~kk 60 (377)
|||+||++||.+ + .|.++.+|..||+|||.||++||. +++.|+.+|..|+.+|+++|.+
T Consensus 121 mdL~tI~~kl~~~~~~-~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~ 199 (207)
T 3u5n_A 121 MDLSTVKKKLQKKHSQ-HYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTE 199 (207)
T ss_dssp CCHHHHHHHHSTTSTT-CCSSHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcccCC-CcCCHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 5 999999999999999999999999 9999999999999999999997
Q ss_pred cC
Q 017098 61 AG 62 (377)
Q Consensus 61 ig 62 (377)
+-
T Consensus 200 ~~ 201 (207)
T 3u5n_A 200 IY 201 (207)
T ss_dssp HS
T ss_pred hC
Confidence 63
No 38
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.31 E-value=7.9e-13 Score=125.37 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++||+++ .|.++.+|..||+|||.||++||++++.|+.+|..|.++|.+.|.++
T Consensus 88 mDL~tIk~kl~~~-~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 88 MDLQTLRENVRKR-LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp CCHHHHHHHHHTT-CCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred CCHHHHHHHhhCC-CcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999998 99999999999999999999999999999999999999999887654
No 39
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=108.60 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=57.9
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|+|.+|++||..+ .|.++++|..||.|||.||++||.+||.||..|..|+++|.+.+.++
T Consensus 50 i~l~~Ikkri~~~-~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL 109 (147)
T 3iu6_A 50 LTFDIIRKNVENN-RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDEL 109 (147)
T ss_dssp CCHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999998 99999999999999999999999999999999999999999988765
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.24 E-value=6.4e-12 Score=120.67 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=54.2
Q ss_pred CCHHHHHHHhhCCCCCC-CHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYM-NSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYk-SveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++|| + .|. ++.+|..||+|||.||++||.+++.|+.+|..|+++|.+.|.+.
T Consensus 71 mDL~tI~~kl--~-~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 71 MSINEIKSRD--Y-EYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp CCHHHHHHSC--C-CSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--h-cccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999 3 444 89999999999999999999999999999999999999999865
No 41
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.21 E-value=7.8e-12 Score=121.82 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAA 61 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kki 61 (377)
|||+||++|| +.+|.++.+|..||+|||.||++||.+++.|+.+|..|+++|.+.|.+.
T Consensus 121 mdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 121 MSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp CCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999 3134489999999999999999999999999999999999999999865
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.18 E-value=3.6e-11 Score=108.64 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=60.9
Q ss_pred CCHHHHHHHhhCCCCCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 017098 1 MDFGTICSNLENGGKYMNSEDVYKDVEYIWENCNKYNSKGDYILDLMKRVKKNFMKLWMAAGLYT 65 (377)
Q Consensus 1 MDLsTIKkKLe~G~kYkSveEF~sDVrLIFsNC~kYN~pgS~Iy~~Ak~LEk~FeK~~kkigL~~ 65 (377)
|||.||++||+.+ .|.++.+|+.||.|||.||.+||.+.+.+..++..|+.+|.+++.++-+|-
T Consensus 105 mDL~~i~kKl~~~-~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 105 LDLEGVKRKMDQG-NYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp CSHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred ccHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCC
Confidence 9999999999998 999999999999999999999999999999999999999999999875554
Done!