Query 017099
Match_columns 377
No_of_seqs 149 out of 1400
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 1.1E-84 2.4E-89 616.2 34.9 371 7-377 5-375 (375)
2 PTZ00281 actin; Provisional 100.0 3.5E-84 7.6E-89 614.6 34.1 376 2-377 1-376 (376)
3 PTZ00466 actin-like protein; P 100.0 1.5E-83 3.2E-88 609.0 36.1 370 6-377 11-380 (380)
4 KOG0676 Actin and related prot 100.0 8E-84 1.7E-88 590.2 25.1 369 4-377 4-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 5.2E-82 1.1E-86 600.6 34.8 376 2-377 1-378 (378)
6 PTZ00280 Actin-related protein 100.0 1.2E-75 2.5E-80 563.9 35.3 370 7-376 4-409 (414)
7 PF00022 Actin: Actin; InterP 100.0 2.5E-76 5.5E-81 567.9 28.9 368 4-377 1-393 (393)
8 smart00268 ACTIN Actin. ACTIN 100.0 5.9E-75 1.3E-79 554.1 34.6 369 8-377 2-373 (373)
9 KOG0679 Actin-related protein 100.0 8.7E-75 1.9E-79 515.3 27.1 368 4-376 8-425 (426)
10 cd00012 ACTIN Actin; An ubiqui 100.0 3E-72 6.6E-77 534.8 33.9 367 9-375 1-371 (371)
11 KOG0677 Actin-related protein 100.0 8E-73 1.7E-77 478.3 21.2 371 5-375 2-386 (389)
12 COG5277 Actin and related prot 100.0 1.4E-68 3.1E-73 507.7 29.6 374 4-377 3-444 (444)
13 KOG0680 Actin-related protein 100.0 1.4E-65 3.1E-70 446.0 25.7 362 6-377 2-399 (400)
14 KOG0681 Actin-related protein 100.0 1.4E-53 2.9E-58 393.7 23.6 363 7-374 23-637 (645)
15 KOG0678 Actin-related protein 100.0 1.2E-51 2.6E-56 359.7 14.9 367 7-374 4-407 (415)
16 KOG0797 Actin-related protein 100.0 2.9E-40 6.3E-45 303.5 19.6 312 66-377 178-615 (618)
17 PRK13930 rod shape-determining 100.0 6.1E-38 1.3E-42 295.1 17.6 308 9-351 10-328 (335)
18 PRK13927 rod shape-determining 100.0 3.3E-36 7.1E-41 283.0 17.1 307 8-351 6-324 (334)
19 TIGR00904 mreB cell shape dete 100.0 1.6E-35 3.5E-40 277.9 17.4 310 10-350 5-326 (333)
20 PRK13929 rod-share determining 100.0 1.3E-34 2.7E-39 271.3 18.6 302 9-348 6-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 7.4E-33 1.6E-37 253.8 16.9 305 8-350 2-320 (326)
22 PRK13928 rod shape-determining 100.0 1.4E-31 3.1E-36 251.4 18.1 305 10-350 6-322 (336)
23 COG1077 MreB Actin-like ATPase 99.9 7E-27 1.5E-31 206.6 14.7 310 7-349 6-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.9 9.4E-22 2E-26 175.1 15.0 210 70-347 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.8 6.3E-19 1.4E-23 159.7 19.9 243 5-349 22-267 (267)
26 TIGR01991 HscA Fe-S protein as 99.8 4.5E-20 9.7E-25 185.2 12.8 300 9-351 1-360 (599)
27 CHL00094 dnaK heat shock prote 99.8 1.3E-19 2.9E-24 182.8 14.9 297 8-351 3-376 (621)
28 PTZ00400 DnaK-type molecular c 99.8 2.4E-19 5.2E-24 181.6 14.8 216 102-351 174-415 (663)
29 PRK01433 hscA chaperone protei 99.8 4.1E-19 8.8E-24 177.3 16.0 206 103-351 142-356 (595)
30 PLN03184 chloroplast Hsp70; Pr 99.8 2.7E-19 5.8E-24 181.4 14.6 297 8-351 40-413 (673)
31 PRK00290 dnaK molecular chaper 99.8 1.9E-19 4.1E-24 182.2 13.3 297 8-351 3-374 (627)
32 TIGR02350 prok_dnaK chaperone 99.8 2.7E-19 5.9E-24 180.4 13.5 296 9-351 2-372 (595)
33 PTZ00186 heat shock 70 kDa pre 99.8 5.3E-19 1.1E-23 178.0 15.4 217 103-351 161-401 (657)
34 PRK05183 hscA chaperone protei 99.8 5.8E-19 1.3E-23 177.5 14.0 296 7-351 19-376 (616)
35 PRK13410 molecular chaperone D 99.8 6.4E-19 1.4E-23 178.1 13.6 297 8-351 3-376 (668)
36 PRK13411 molecular chaperone D 99.8 5.8E-19 1.3E-23 178.7 13.1 302 8-351 3-376 (653)
37 PTZ00009 heat shock 70 kDa pro 99.8 3.8E-18 8.3E-23 172.9 17.3 214 103-351 141-381 (653)
38 PRK11678 putative chaperone; P 99.7 3E-16 6.5E-21 151.6 13.9 180 9-192 2-260 (450)
39 PF00012 HSP70: Hsp70 protein; 99.7 2.9E-16 6.3E-21 159.4 11.9 215 103-351 136-376 (602)
40 COG0443 DnaK Molecular chapero 99.7 1.9E-15 4.1E-20 150.3 17.0 311 6-351 4-357 (579)
41 KOG0100 Molecular chaperones G 99.5 9.7E-13 2.1E-17 119.7 17.8 220 103-351 173-411 (663)
42 PRK09472 ftsA cell division pr 99.5 3.1E-13 6.7E-18 130.6 13.0 202 114-351 164-388 (420)
43 TIGR01174 ftsA cell division p 99.5 7E-13 1.5E-17 126.5 12.7 174 114-321 156-340 (371)
44 KOG0101 Molecular chaperones H 99.4 3.4E-12 7.4E-17 124.3 16.5 214 103-351 144-383 (620)
45 COG0849 ftsA Cell division ATP 99.3 6E-12 1.3E-16 119.0 10.8 201 114-351 163-380 (418)
46 TIGR01175 pilM type IV pilus a 99.3 2.7E-10 5.9E-15 107.8 19.7 155 114-320 141-307 (348)
47 PRK13917 plasmid segregation p 99.2 3.4E-10 7.4E-15 106.4 17.3 184 8-197 3-232 (344)
48 KOG0104 Molecular chaperones G 99.2 1.2E-10 2.7E-15 113.5 11.1 94 103-197 159-275 (902)
49 PF11104 PilM_2: Type IV pilus 99.2 9.8E-10 2.1E-14 103.6 16.2 186 80-320 86-299 (340)
50 TIGR03739 PRTRC_D PRTRC system 99.2 9.5E-10 2.1E-14 102.7 15.8 183 12-198 2-215 (320)
51 COG4820 EutJ Ethanolamine util 99.2 1.7E-11 3.7E-16 101.6 3.5 237 5-345 27-268 (277)
52 KOG0103 Molecular chaperones H 99.0 1.4E-08 3.1E-13 98.8 15.5 240 102-375 137-407 (727)
53 COG4972 PilM Tfp pilus assembl 98.9 8.4E-08 1.8E-12 86.2 15.4 148 122-320 154-312 (354)
54 KOG0102 Molecular chaperones m 98.8 9.6E-08 2.1E-12 90.6 15.1 216 103-349 161-399 (640)
55 PF06406 StbA: StbA protein; 98.4 7.3E-07 1.6E-11 83.1 8.0 70 128-197 137-212 (318)
56 TIGR00241 CoA_E_activ CoA-subs 98.4 2.1E-05 4.5E-10 70.7 15.7 43 298-348 206-248 (248)
57 TIGR03286 methan_mark_15 putat 98.1 1.4E-05 2.9E-10 75.3 9.8 48 295-350 355-402 (404)
58 PRK10719 eutA reactivating fac 98.1 1.8E-05 3.9E-10 75.5 9.8 163 1-190 1-184 (475)
59 TIGR02261 benz_CoA_red_D benzo 98.1 3.8E-05 8.3E-10 68.5 10.9 50 297-349 213-262 (262)
60 TIGR03192 benz_CoA_bzdQ benzoy 98.1 3.2E-05 7E-10 69.9 10.3 49 294-350 238-287 (293)
61 COG1924 Activator of 2-hydroxy 98.0 0.00037 8E-09 64.3 15.3 44 299-350 346-389 (396)
62 PF06277 EutA: Ethanolamine ut 97.3 0.0015 3.2E-08 62.7 8.9 173 7-202 3-204 (473)
63 PRK13317 pantothenate kinase; 96.1 0.09 2E-06 47.9 11.5 71 275-350 201-273 (277)
64 TIGR02259 benz_CoA_red_A benzo 96.0 0.025 5.5E-07 53.2 7.4 52 295-349 381-432 (432)
65 PF01869 BcrAD_BadFG: BadF/Bad 96.0 0.011 2.4E-07 53.9 5.0 48 299-349 224-271 (271)
66 PF08841 DDR: Diol dehydratase 95.8 0.02 4.4E-07 50.9 5.6 95 114-218 93-192 (332)
67 PRK11031 guanosine pentaphosph 95.6 0.088 1.9E-06 52.3 10.1 79 110-190 85-170 (496)
68 TIGR03706 exo_poly_only exopol 95.2 0.071 1.5E-06 49.3 7.5 79 110-191 79-164 (300)
69 TIGR00555 panK_eukar pantothen 95.0 0.24 5.3E-06 45.0 10.0 68 275-347 209-278 (279)
70 COG0248 GppA Exopolyphosphatas 94.1 0.1 2.2E-06 51.4 5.9 74 116-191 88-168 (492)
71 TIGR00744 ROK_glcA_fam ROK fam 94.1 2.2 4.7E-05 39.7 14.7 52 121-174 89-147 (318)
72 PRK10854 exopolyphosphatase; P 94.0 0.14 3E-06 51.2 6.8 78 110-189 90-174 (513)
73 PRK03011 butyrate kinase; Prov 93.8 5.8 0.00013 37.6 16.8 46 297-346 297-342 (358)
74 PF14450 FtsA: Cell division p 93.7 0.31 6.7E-06 38.3 7.0 58 153-221 2-70 (120)
75 PRK09557 fructokinase; Reviewe 92.9 3.9 8.5E-05 37.7 14.1 52 122-175 89-147 (301)
76 PF01968 Hydantoinase_A: Hydan 91.9 0.15 3.4E-06 46.8 3.5 29 146-174 73-101 (290)
77 PF02541 Ppx-GppA: Ppx/GppA ph 91.5 0.38 8.3E-06 44.1 5.6 75 114-191 69-151 (285)
78 COG2441 Predicted butyrate kin 91.1 0.32 7E-06 43.4 4.4 73 276-351 257-332 (374)
79 PF07318 DUF1464: Protein of u 91.1 1.1 2.4E-05 41.7 7.9 49 298-350 263-314 (343)
80 COG4819 EutA Ethanolamine util 90.5 3.3 7.1E-05 38.2 10.1 156 4-187 2-180 (473)
81 PRK13321 pantothenate kinase; 88.6 1.6 3.5E-05 39.3 7.0 19 9-27 2-20 (256)
82 PRK13324 pantothenate kinase; 88.4 4.7 0.0001 36.3 9.8 19 9-27 2-20 (258)
83 TIGR03123 one_C_unchar_1 proba 88.4 0.48 1E-05 43.9 3.5 30 145-174 123-152 (318)
84 TIGR02707 butyr_kinase butyrat 88.0 23 0.0005 33.5 14.6 27 297-323 295-321 (351)
85 PF03309 Pan_kinase: Type III 87.9 4.3 9.3E-05 35.2 9.1 19 10-28 2-20 (206)
86 COG1521 Pantothenate kinase ty 87.7 7.9 0.00017 34.6 10.6 18 9-26 2-19 (251)
87 COG1548 Predicted transcriptio 84.7 0.66 1.4E-05 41.0 2.2 23 149-171 129-151 (330)
88 TIGR00671 baf pantothenate kin 83.3 15 0.00032 32.8 10.4 18 10-27 2-19 (243)
89 PRK13318 pantothenate kinase; 81.8 24 0.00052 31.7 11.3 18 9-26 2-19 (258)
90 KOG2708 Predicted metalloprote 80.5 3.1 6.7E-05 36.2 4.6 53 146-199 120-172 (336)
91 PRK13329 pantothenate kinase; 79.6 15 0.00033 32.9 9.1 17 9-25 3-19 (249)
92 PRK13326 pantothenate kinase; 78.6 36 0.00078 30.7 11.2 20 9-28 8-27 (262)
93 PF08735 DUF1786: Putative pyr 75.3 28 0.00061 31.1 9.2 46 127-173 138-190 (254)
94 PRK13320 pantothenate kinase; 74.2 35 0.00077 30.4 9.8 19 9-27 4-22 (244)
95 COG0145 HyuA N-methylhydantoin 69.8 4 8.6E-05 42.0 3.1 30 144-173 270-301 (674)
96 PRK13331 pantothenate kinase; 60.6 9.1 0.0002 34.3 3.2 27 1-27 1-27 (251)
97 smart00842 FtsA Cell division 58.1 25 0.00054 29.8 5.5 21 72-92 36-56 (187)
98 PRK05082 N-acetylmannosamine k 56.1 90 0.002 28.4 9.2 49 125-175 92-146 (291)
99 PRK13322 pantothenate kinase; 56.0 1.3E+02 0.0029 26.8 9.9 18 9-26 2-19 (246)
100 PF03702 UPF0075: Uncharacteri 54.6 6.1 0.00013 37.5 1.1 26 296-321 285-310 (364)
101 PRK05082 N-acetylmannosamine k 48.0 30 0.00064 31.6 4.6 66 276-349 221-286 (291)
102 smart00732 YqgFc Likely ribonu 44.9 23 0.00051 26.1 2.9 19 8-26 2-20 (99)
103 PF02782 FGGY_C: FGGY family o 44.0 30 0.00066 29.3 3.8 48 295-351 149-196 (198)
104 PTZ00340 O-sialoglycoprotein e 43.1 14 0.00031 34.8 1.7 50 296-350 264-319 (345)
105 TIGR01174 ftsA cell division p 43.1 49 0.0011 31.5 5.4 22 72-93 37-58 (371)
106 PRK09698 D-allose kinase; Prov 42.7 48 0.001 30.4 5.2 53 121-175 96-154 (302)
107 PRK13310 N-acetyl-D-glucosamin 42.1 41 0.00089 30.9 4.6 53 121-175 88-147 (303)
108 smart00732 YqgFc Likely ribonu 40.1 82 0.0018 23.1 5.2 44 152-195 3-47 (99)
109 PRK13310 N-acetyl-D-glucosamin 39.5 2.5E+02 0.0054 25.6 9.4 67 276-349 233-300 (303)
110 PRK09585 anmK anhydro-N-acetyl 39.2 25 0.00055 33.4 2.7 23 297-319 288-310 (365)
111 COG4012 Uncharacterized protei 38.6 1.5E+02 0.0033 26.8 7.1 39 135-173 208-250 (342)
112 PRK13311 N-acetyl-D-glucosamin 35.4 3.2E+02 0.0069 24.3 9.3 53 121-175 88-147 (256)
113 COG0533 QRI7 Metal-dependent p 35.4 28 0.00061 32.6 2.3 56 291-351 257-318 (342)
114 PRK09472 ftsA cell division pr 35.1 96 0.0021 30.1 6.1 21 72-92 45-65 (420)
115 TIGR03192 benz_CoA_bzdQ benzoy 34.4 69 0.0015 29.5 4.6 47 152-200 34-83 (293)
116 COG4457 SrfB Uncharacterized p 33.5 1.3E+02 0.0028 31.0 6.5 24 103-126 464-487 (1014)
117 PF03727 Hexokinase_2: Hexokin 30.8 50 0.0011 29.4 3.1 50 299-351 189-240 (243)
118 PF13941 MutL: MutL protein 30.4 31 0.00068 33.8 1.8 74 102-175 178-273 (457)
119 PRK15027 xylulokinase; Provisi 28.8 49 0.0011 32.8 3.0 48 296-351 387-434 (484)
120 TIGR01319 glmL_fam conserved h 28.6 33 0.00073 33.5 1.7 70 104-173 176-272 (463)
121 KOG1386 Nucleoside phosphatase 28.6 4.9E+02 0.011 25.8 9.4 133 10-165 12-177 (501)
122 COG0849 ftsA Cell division ATP 28.6 1.1E+02 0.0023 29.8 5.0 57 8-92 7-63 (418)
123 TIGR03286 methan_mark_15 putat 28.5 95 0.0021 29.9 4.6 50 151-200 145-194 (404)
124 cd08627 PI-PLCc_gamma1 Catalyt 28.1 97 0.0021 27.3 4.2 43 83-131 75-117 (229)
125 COG1149 MinD superfamily P-loo 27.7 77 0.0017 28.7 3.6 39 101-140 186-224 (284)
126 TIGR03367 queuosine_QueD queuo 27.7 50 0.0011 24.4 2.1 49 74-129 42-90 (92)
127 cd08626 PI-PLCc_beta4 Catalyti 26.1 1E+02 0.0022 27.7 4.2 45 82-132 76-120 (257)
128 PF00370 FGGY_N: FGGY family o 25.9 50 0.0011 29.2 2.2 19 9-27 2-20 (245)
129 cd08630 PI-PLCc_delta3 Catalyt 25.8 1.1E+02 0.0023 27.6 4.2 44 82-131 74-117 (258)
130 KOG2707 Predicted metalloprote 25.5 75 0.0016 29.9 3.2 74 276-351 288-362 (405)
131 TIGR01312 XylB D-xylulose kina 25.4 93 0.002 30.7 4.3 47 296-351 391-437 (481)
132 cd08592 PI-PLCc_gamma Catalyti 25.3 1.1E+02 0.0024 27.0 4.1 43 83-131 75-117 (229)
133 TIGR00329 gcp_kae1 metallohydr 25.1 64 0.0014 29.8 2.8 26 296-321 259-284 (305)
134 cd08596 PI-PLCc_epsilon Cataly 25.1 1.1E+02 0.0024 27.5 4.1 43 83-131 75-117 (254)
135 cd08632 PI-PLCc_eta1 Catalytic 24.6 1.2E+02 0.0026 27.2 4.2 43 83-131 75-117 (253)
136 PF13941 MutL: MutL protein 24.5 50 0.0011 32.4 2.1 22 9-30 2-25 (457)
137 PRK00976 hypothetical protein; 24.5 1E+02 0.0022 28.8 4.0 28 145-173 144-171 (326)
138 PRK00976 hypothetical protein; 24.4 1.1E+02 0.0024 28.5 4.2 44 297-350 265-310 (326)
139 PRK13321 pantothenate kinase; 24.4 2.2E+02 0.0047 25.5 6.1 47 153-199 3-51 (256)
140 cd08595 PI-PLCc_zeta Catalytic 24.4 1.1E+02 0.0025 27.4 4.1 44 82-131 74-117 (257)
141 cd08594 PI-PLCc_eta Catalytic 24.2 1.2E+02 0.0026 26.7 4.1 43 83-131 75-117 (227)
142 cd08631 PI-PLCc_delta4 Catalyt 24.0 1.2E+02 0.0025 27.4 4.1 43 83-131 75-117 (258)
143 PLN02666 5-oxoprolinase 23.9 75 0.0016 35.6 3.4 21 150-171 314-334 (1275)
144 cd08598 PI-PLC1c_yeast Catalyt 23.7 1.2E+02 0.0026 26.8 4.1 43 83-131 75-117 (231)
145 cd08629 PI-PLCc_delta1 Catalyt 23.6 1.2E+02 0.0026 27.3 4.1 43 83-131 75-117 (258)
146 PRK14878 UGMP family protein; 23.5 72 0.0016 29.8 2.9 26 296-321 242-267 (323)
147 cd08593 PI-PLCc_delta Catalyti 23.5 1.2E+02 0.0026 27.3 4.1 44 82-131 74-117 (257)
148 cd08591 PI-PLCc_beta Catalytic 23.1 1.3E+02 0.0027 27.2 4.1 43 83-131 77-119 (257)
149 KOG1794 N-Acetylglucosamine ki 22.6 1.3E+02 0.0029 27.5 4.1 91 82-173 47-143 (336)
150 cd08633 PI-PLCc_eta2 Catalytic 22.2 1.4E+02 0.003 26.9 4.2 44 82-131 74-117 (254)
151 PF07520 SrfB: Virulence facto 22.1 1.4E+02 0.003 32.4 4.7 54 116-170 216-269 (1002)
152 PRK13317 pantothenate kinase; 22.0 76 0.0016 28.9 2.6 44 148-195 94-137 (277)
153 KOG1794 N-Acetylglucosamine ki 21.4 6.6E+02 0.014 23.3 10.3 71 276-351 244-316 (336)
154 PRK00180 acetate kinase A/prop 21.3 4.2E+02 0.009 25.7 7.5 27 296-322 324-351 (402)
155 PRK13333 pantothenate kinase; 21.2 1.1E+02 0.0024 26.5 3.3 28 141-171 77-104 (206)
156 PRK13318 pantothenate kinase; 21.2 2.4E+02 0.0052 25.2 5.7 47 153-199 3-51 (258)
157 cd08558 PI-PLCc_eukaryota Cata 21.1 1.5E+02 0.0032 26.2 4.1 45 82-132 74-118 (226)
158 cd08597 PI-PLCc_PRIP_metazoa C 21.0 1.4E+02 0.0031 26.9 4.0 43 83-131 75-117 (260)
159 TIGR03722 arch_KAE1 universal 20.9 89 0.0019 29.1 2.9 26 296-321 243-268 (322)
160 PF01968 Hydantoinase_A: Hydan 20.8 54 0.0012 30.1 1.4 27 5-31 75-101 (290)
161 PF03612 EIIBC-GUT_N: Sorbitol 20.3 57 0.0012 27.5 1.3 33 3-40 59-91 (183)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.1e-84 Score=616.23 Aligned_cols=371 Identities=56% Similarity=1.022 Sum_probs=347.5
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHHH
Q 017099 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK 86 (377)
Q Consensus 7 ~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~~ 86 (377)
.++||||+||+++|+||+|++.|++++||++++++......+....+.++|+++...++...+++|+++|.+.|||.++.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 45899999999999999999999999999999987653222223557789999988878889999999999999999999
Q ss_pred HHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCceEEEE
Q 017099 87 IWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166 (377)
Q Consensus 87 ~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~p 166 (377)
+|+|+|.+.|+++++++|+++++|+++++..|+++++++||.|++|++++.+++++++|++|++||+|||+|++.|+|+|
T Consensus 85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCC
Q 017099 167 IYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD 246 (377)
Q Consensus 167 v~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd 246 (377)
|+||+++.++..++++||++++++|.++|.++++++....+.+.++++|+++||++.|+++++............|.+||
T Consensus 165 V~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD 244 (375)
T PTZ00452 165 VFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD 244 (375)
T ss_pred EECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC
Confidence 99999999999999999999999999999988888877777889999999999999999887765544444567899999
Q ss_pred CceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCC
Q 017099 247 GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS 326 (377)
Q Consensus 247 ~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~ 326 (377)
|+.+.++.+|+.++|+||+|++++.+..||+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.++|..
T Consensus 245 g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~ 324 (375)
T PTZ00452 245 GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQ 324 (375)
T ss_pred CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017099 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377 (377)
Q Consensus 327 ~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
.++++..+++|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 325 ~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 325 LKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred ceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 899999999999999999999999999999999999999999999999997
No 2
>PTZ00281 actin; Provisional
Probab=100.00 E-value=3.5e-84 Score=614.59 Aligned_cols=376 Identities=90% Similarity=1.409 Sum_probs=352.7
Q ss_pred CCCCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCH
Q 017099 2 ADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (377)
Q Consensus 2 ~~~~~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~ 81 (377)
|..|+.++||||+||+++|+||+|++.|++++||.++++++...+.+.++.+.++|+++...+....+++|+++|.+.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw 80 (376)
T PTZ00281 1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80 (376)
T ss_pred CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence 56778899999999999999999999999999999999877654444445678899998877777889999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCc
Q 017099 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
+.++.+|+++|.+.|.++++++||++++|+++++..|+++++++||.|++|++++.+++++++|++|++||+|||+|++.
T Consensus 81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (376)
T PTZ00281 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV 160 (376)
T ss_pred HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccce
Q 017099 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKS 241 (377)
Q Consensus 162 t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
|+|+||+||+++.++..++++||++++++|+++|.++++++....+.+.++++|+++|||+.+++.+++...........
T Consensus 161 t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (376)
T PTZ00281 161 SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKS 240 (376)
T ss_pred EEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence 99999999999999999999999999999999999888887777778899999999999999988777655444456678
Q ss_pred EEcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhh
Q 017099 242 YELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 242 ~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~ 321 (377)
|.+|||+.+.++.+|+.++|+||+|+..+.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.
T Consensus 241 y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~ 320 (376)
T PTZ00281 241 YELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTA 320 (376)
T ss_pred EECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017099 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377 (377)
Q Consensus 322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
++|...++++..+++|.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 321 ~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 321 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred hCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 99988899999999999999999999999999999999999999999999999997
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.5e-83 Score=609.02 Aligned_cols=370 Identities=52% Similarity=0.970 Sum_probs=345.9
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHH
Q 017099 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 6 ~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~ 85 (377)
+.++||||+||+++|+||+|++.|++++||++++++....+.+....+.++|+++...++...+++|+++|.+.|||.++
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e 90 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDME 90 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHH
Confidence 45689999999999999999999999999999998876544444456789999988777777899999999999999999
Q ss_pred HHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCceEEE
Q 017099 86 KIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 165 (377)
.+|+|+| +.|++.++++|+++++++++++..|+++++++||.|++|++++.++++||+|++|++||+|||+|++.|+|+
T Consensus 91 ~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~ 169 (380)
T PTZ00466 91 NIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCV 169 (380)
T ss_pred HHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEE
Confidence 9999998 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcC
Q 017099 166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP 245 (377)
Q Consensus 166 pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p 245 (377)
||+||+++.++..++++||++++++|+++|.+++..+....+.+.++++|+++|||+.|+.++.+... .......|.+|
T Consensus 170 PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~LP 248 (380)
T PTZ00466 170 SIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYILP 248 (380)
T ss_pred EEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEECC
Confidence 99999999999999999999999999999998888777777888999999999999999877665432 22345789999
Q ss_pred CCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCC
Q 017099 246 DGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPS 325 (377)
Q Consensus 246 d~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~ 325 (377)
||..+.++.+|++++|+||+|+.++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.+.|.
T Consensus 249 dg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~ 328 (380)
T PTZ00466 249 DGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPK 328 (380)
T ss_pred CCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017099 326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377 (377)
Q Consensus 326 ~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
..++++..+++|++++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 329 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 329 DITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 8899999999999999999999999999999999999999999999999997
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=8e-84 Score=590.16 Aligned_cols=369 Identities=81% Similarity=1.313 Sum_probs=351.3
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017099 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 4 ~~~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (377)
..+.++||||+||..+|+||+|++.|+.++||.++++++...+.++.+.+.++|+++...+ .+++|+++|.+.||++
T Consensus 4 ~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~ 80 (372)
T KOG0676|consen 4 ADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD 80 (372)
T ss_pred cCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHH
Confidence 4567999999999999999999999999999999999998888888899999999998877 6799999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCceE
Q 017099 84 MEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.||.|+|+..|.++|+++||++++|+++|+..||++++++||.|++|++++..++++ |++|++||+|||+|++.|.
T Consensus 81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH 158 (372)
T ss_pred HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999554444 9999999999999999999
Q ss_pred EEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEE
Q 017099 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 243 (377)
Q Consensus 164 v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
++||++|+++++++..+++||++++++++..|.++++.+....+.++++++|+++||++.|+++++............|.
T Consensus 159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~ 238 (372)
T KOG0676|consen 159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE 238 (372)
T ss_pred eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence 99999999999999999999999999999999999999988889999999999999999999998887444555667799
Q ss_pred cCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhC
Q 017099 244 LPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA 323 (377)
Q Consensus 244 ~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~ 323 (377)
+|||+.+.++.+|+.++|+||+|+.++.+..+|++++.++|.+|++|.|+.|+.||+|+||++.+|||.+||++|++.+.
T Consensus 239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~ 318 (372)
T KOG0676|consen 239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA 318 (372)
T ss_pred CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017099 324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377 (377)
Q Consensus 324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
|...+++++.+|++.+++|+||||+|++.+|+.+||||+||+|+|+.+++||||
T Consensus 319 P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 319 PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred CCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 998999999999999999999999999999999999999999999999999998
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=5.2e-82 Score=600.57 Aligned_cols=376 Identities=79% Similarity=1.294 Sum_probs=350.3
Q ss_pred CCCCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCH
Q 017099 2 ADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (377)
Q Consensus 2 ~~~~~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~ 81 (377)
|+-++.++||||+||+++|+||+|++.|++++||+++++++...+.+...+..++|+++....+...+++|+++|.+.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~ 80 (378)
T PTZ00004 1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNW 80 (378)
T ss_pred CCCCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCH
Confidence 46688889999999999999999999999999999999887654444445678899998877677789999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCc
Q 017099 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
+.++.+|+|+|.+.|++.+.++||++++|+++++..|+.+++++||.++++++++.+++++|+|++|.+||+|||+|++.
T Consensus 81 d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (378)
T PTZ00004 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (378)
T ss_pred HHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCC-ccc
Q 017099 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA-VEK 240 (377)
Q Consensus 162 t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~-~~~ 240 (377)
|+|+||+||+++.++..++++||++++++|+++|.+++..+....+.+.++++|+++|||+.|+++++........ ...
T Consensus 161 t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (378)
T PTZ00004 161 SHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE 240 (378)
T ss_pred EEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence 9999999999999999999999999999999999998887777677889999999999999999887764432222 367
Q ss_pred eEEcCCCceEeeCCccccccccCCCCCCCCCC-CCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHH
Q 017099 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 241 ~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el 319 (377)
.|.+|||+.+.++.+|++++|+||+|+.++.+ ..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.+||++||
T Consensus 241 ~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL 320 (378)
T PTZ00004 241 SYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKEL 320 (378)
T ss_pred EEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHH
Confidence 89999999999999999999999999998887 89999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017099 320 SALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
++++|...++++..+++|.+++|+|||++|++++|++.||||+||+|+|++++.||||
T Consensus 321 ~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 321 TTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred HHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9999988889999999999999999999999999999999999999999999999997
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.2e-75 Score=563.88 Aligned_cols=370 Identities=41% Similarity=0.749 Sum_probs=332.5
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCcc---ccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017099 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 7 ~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (377)
.++||||+||+++|+||+|++.|++++||++++++..... .+....+.++|+++........+++|+++|.+.|||.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 5689999999999999999999999999999987653211 1112336789999988877789999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhc----------CCceEE
Q 017099 84 MEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAS----------GRTTGI 153 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~~~l 153 (377)
++.+|+|+|.+.|++++.++++++++|++++...|+.+++++||.+++|++++.+++++|+|++ |.++|+
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999988899999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhc
Q 017099 154 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAK 233 (377)
Q Consensus 154 VVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~ 233 (377)
|||+|++.|+|+||++|+++.++..++++||++++++|.++|.+++..+....+.+.++++|+++||++.|+.++++...
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~ 243 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYD 243 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998888777666678899999999999999888776543
Q ss_pred cC-CCccceEEcCC---Cc--eEeeCCccccccccCCCCCCCCCC-CCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCC
Q 017099 234 TS-SAVEKSYELPD---GQ--VITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST 306 (377)
Q Consensus 234 ~~-~~~~~~~~~pd---~~--~i~i~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s 306 (377)
.. ......|.+|| |. .+.++.+|++++|+||+|+.++.+ ..+|+++|.++|.+||+|.|+.|++||+|+||+|
T Consensus 244 ~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s 323 (414)
T PTZ00280 244 SDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGST 323 (414)
T ss_pred cCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcc
Confidence 22 22345688887 33 789999999999999999887544 4599999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhhC----------------CCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCc
Q 017099 307 MFPGIADRMSKEISALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPS 370 (377)
Q Consensus 307 ~i~g~~~rl~~el~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~ 370 (377)
++|||.+||++||+.++ |...++++..++++.+++|+||||+|++++|+++||||+||+|+|++
T Consensus 324 ~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~ 403 (414)
T PTZ00280 324 MFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPS 403 (414)
T ss_pred cCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChH
Confidence 99999999999999986 34567889988899999999999999999999999999999999999
Q ss_pred cccccc
Q 017099 371 IVHRKC 376 (377)
Q Consensus 371 ~~~~k~ 376 (377)
+++|+.
T Consensus 404 i~~~~~ 409 (414)
T PTZ00280 404 ICRYNN 409 (414)
T ss_pred heeecc
Confidence 998873
No 7
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2.5e-76 Score=567.87 Aligned_cols=368 Identities=51% Similarity=0.970 Sum_probs=323.8
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017099 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 4 ~~~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (377)
.|+.++||||+||.+||+||+|++.|+.++|++++++..... ..+.++|+++........+++|+++|.+.||+.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA 75 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence 478999999999999999999999999999999998876532 226789988666666678999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCceE
Q 017099 84 MEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|+++|.+.|.+++++++|++++|+++++..|+.+++++||++++++|+++++++||+|++|.+||||||+|++.|+
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~ 155 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS 155 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCC-----------------ccChhHHHHHHHHhHhcceeecCHH
Q 017099 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS-----------------FTTTAEREIVRDMKEKLAYIALDYE 226 (377)
Q Consensus 164 v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~-----------------~~~~~~~~~~~~ik~~~~~v~~~~~ 226 (377)
|+||+||+++.++.+++++||++++++|+++|.+++.. +....+...++++|+++|+++.+..
T Consensus 156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 235 (393)
T PF00022_consen 156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD 235 (393)
T ss_dssp EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence 99999999999999999999999999999999986432 2334567889999999999999887
Q ss_pred HHHHHhccCCCccceEEcCCCceEeeCCccccccccCCCCCCCCCCCC-------ChhHHHHHHHhcCCHHHHHhhhcCe
Q 017099 227 QELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESA-------GIHETTYNSIMKCDVDIRKDLYGNI 299 (377)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~-------~l~~~I~~~i~~~~~~~r~~l~~nI 299 (377)
. .+...........|.+|||+.+.++.+|+.++|+||+|+..+.+.. +|+++|.++|.+||.|.|+.|++||
T Consensus 236 ~-~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI 314 (393)
T PF00022_consen 236 E-EQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI 314 (393)
T ss_dssp H-HHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred c-ccccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence 5 1111222456778999999999999999999999999998887766 9999999999999999999999999
Q ss_pred EEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCC-CCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017099 300 VLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377 (377)
Q Consensus 300 vl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
+||||+|++|||.+||++||..+.|...++++..++ +|.+++|.|||++|++++|+++||||+||+|+|+++++||||
T Consensus 315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred EEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999999999888899999998 999999999999999999999999999999999999999997
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=5.9e-75 Score=554.09 Aligned_cols=369 Identities=68% Similarity=1.183 Sum_probs=339.9
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHHHH
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI 87 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~ 87 (377)
++||||+||++||+||++++.|++++||+++++++.....+ ....+++|+++....+...+++|+++|.+.||+.++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999998865432111 23467899998776666689999999999999999999
Q ss_pred HHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017099 88 WHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 167 (377)
|+++|.+.|++.++++++++++|.+++...|+.+++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence 99999778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhcc---CCCccceEEc
Q 017099 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKT---SSAVEKSYEL 244 (377)
Q Consensus 168 ~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~ 244 (377)
+||.++.++.+++++||++++++|.++|++++..+....+.+.++++|+++|+++.+++++++.... .......|.+
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (373)
T smart00268 161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL 240 (373)
T ss_pred ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence 9999999999999999999999999999886666655667789999999999999998877765432 2445678999
Q ss_pred CCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCC
Q 017099 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAP 324 (377)
Q Consensus 245 pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~ 324 (377)
|||..+.++.+|+.++|+||+|+..+.+..+|+++|.++|.+||.+.|+.+++||+||||+|++|||.+||++||+.+.|
T Consensus 241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p 320 (373)
T smart00268 241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP 320 (373)
T ss_pred CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017099 325 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377 (377)
Q Consensus 325 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
...++++..+++|.+++|.|||++|++++|++.||||+||+|+|+++++||||
T Consensus 321 ~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 321 KKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 88889999889999999999999999999999999999999999999999997
No 9
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=8.7e-75 Score=515.32 Aligned_cols=368 Identities=40% Similarity=0.754 Sum_probs=318.7
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcc-cCcceeeccccCCccCCHH
Q 017099 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK-RGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 4 ~~~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~-~~~~~~~~p~~~g~i~~~~ 82 (377)
.++..+||||+||++||+||+|++.|++++||.++.....+.- ..+...++++.++... +....++.|+++|.+.|||
T Consensus 8 gdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d-~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD 86 (426)
T KOG0679|consen 8 GDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGD-AEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWD 86 (426)
T ss_pred ccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCc-cccccceEeechhccCCCCCCeeccchhcCCcccHH
Confidence 6889999999999999999999999999999999853222110 0123346888877654 5556789999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCce
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t 162 (377)
.++.+|+|.|..+|+++|.++|+++++|+.+++..|++++|++||++++|+++++.+++|++|++|+.||||||||+++|
T Consensus 87 ~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~ 166 (426)
T KOG0679|consen 87 LFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHT 166 (426)
T ss_pred HHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCc
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChh---------------------------------HHH
Q 017099 163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTA---------------------------------ERE 209 (377)
Q Consensus 163 ~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~---------------------------------~~~ 209 (377)
+|+||+||+++.+++++.++||++|+..++++|..+++++.+.. ...
T Consensus 167 svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~ 246 (426)
T KOG0679|consen 167 SVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQR 246 (426)
T ss_pred eeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876543210 012
Q ss_pred HHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCCCceEeeCCccccccccCCCCCCCC------------CCCCChh
Q 017099 210 IVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG------------MESAGIH 277 (377)
Q Consensus 210 ~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~------------~~~~~l~ 277 (377)
.++++|++++.++..+.++.. ..+-.++.|++|||....++.+||+++|.||.|+... ....|++
T Consensus 247 v~~e~ke~v~qv~dtp~de~~---~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~ 323 (426)
T KOG0679|consen 247 VYQEFKESVLQVSDTPFDEEV---AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLP 323 (426)
T ss_pred HHHHHHHHHHhccCCCCcccc---cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCch
Confidence 355566666655432222111 1124578899999999999999999999999998642 2356999
Q ss_pred HHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCC---CCccccchhhHHhhccccc
Q 017099 278 ETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTF 354 (377)
Q Consensus 278 ~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l~~~ 354 (377)
+++..+|..||+|+|..|+.|||+|||+|.|+||.+||++||+.++|.+ ++++++.. +|.+++|+||||+|+|++|
T Consensus 324 ~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtF 402 (426)
T KOG0679|consen 324 HLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTF 402 (426)
T ss_pred HHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccH
Confidence 9999999999999999999999999999999999999999999999987 99998763 7999999999999999999
Q ss_pred ccccccHHHHhhcCC-ccccccc
Q 017099 355 QQMWIAKSEYDESGP-SIVHRKC 376 (377)
Q Consensus 355 ~~~~itr~~y~e~G~-~~~~~k~ 376 (377)
+.+||||+||+|.|. +-+.|||
T Consensus 403 qq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 403 QQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred HHHhhhHHHHHHhhhHHHHhhcC
Confidence 999999999999999 8899998
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=3e-72 Score=534.83 Aligned_cols=367 Identities=70% Similarity=1.202 Sum_probs=335.4
Q ss_pred cEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCc-ceeeccccCCccCCHHHHHHH
Q 017099 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKI 87 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~~~~~~~~~ 87 (377)
+||||+||+++|+||++++.|++++||++++++......+.+....++|+++...... ..+++|+++|.+.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 6899999999999999999999999999998876543333345678899998876554 788999999999999999999
Q ss_pred HHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017099 88 WHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 167 (377)
|+++|.+.|..+++++++++++|+++++..|+.+++++||.+++++|++++++++|+|++|.++|+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHH-hccCCCccceEEcCC
Q 017099 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET-AKTSSAVEKSYELPD 246 (377)
Q Consensus 168 ~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~pd 246 (377)
+||+++.++..++++||+++++++.++|++++..+....+...++++|+++|+++.++.++... ..........|.+||
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd 240 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD 240 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence 9999999999999999999999999999988876666667889999999999999988766532 223344567899999
Q ss_pred CceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCC-
Q 017099 247 GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPS- 325 (377)
Q Consensus 247 ~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~- 325 (377)
++.+.++.+|+.++|+||+|+..+....+|+++|.++|..||.+.|+.+++||+||||+|++|||.+||++||..+.|.
T Consensus 241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~ 320 (371)
T cd00012 241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS 320 (371)
T ss_pred CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc
Confidence 9999999999999999999998888889999999999999999999999999999999999999999999999999987
Q ss_pred -CceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCcccccc
Q 017099 326 -SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRK 375 (377)
Q Consensus 326 -~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
...+++..+++|.+++|.|||++|++.+|++.||||+||+|+|+++++||
T Consensus 321 ~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 321 KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 55677878889999999999999999999999999999999999999987
No 11
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=8e-73 Score=478.31 Aligned_cols=371 Identities=50% Similarity=0.911 Sum_probs=346.0
Q ss_pred CCCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCc--cccCCCccceeccchhcccCcceeeccccCCccCCHH
Q 017099 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 5 ~~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~--~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (377)
++.++||.|.||.+.|+||+|++.|.+++|+.+++|--... .....-++..||+++...+...++.||+.+|.+.||+
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD 81 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence 45899999999999999999999999999999998753321 1122347888999999988889999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCce
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t 162 (377)
+++++|+|.|.++|++++.+.++++++||++|...|+++++..||+++|.+|++.-++++++|+.|..+|+|||.|.+.|
T Consensus 82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceE
Q 017099 163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 242 (377)
Q Consensus 163 ~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
.|+||++|..+++-..+++++|++++++|.++|..+|+.++.+++++.++++|+++||++-|.+.+-+...++..+..+|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999988888887878888999
Q ss_pred EcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhh
Q 017099 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISAL 322 (377)
Q Consensus 243 ~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~ 322 (377)
.+|||..|.++.+||.+||.||+|.++..+.+++.+++.++|+..++|.|..+.++|+|+||++..||+..||++||+++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql 321 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL 321 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC-----------CCceEEEECCCCCccccchhhHHhhcc-cccccccccHHHHhhcCCcccccc
Q 017099 323 AP-----------SSMKIKVVAPPERKYSVWIGGSILASL-STFQQMWIAKSEYDESGPSIVHRK 375 (377)
Q Consensus 323 ~~-----------~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
.- ...++++-.||.+...+|+||+++|.+ .+-+++|+||+||+|.|++.+.+.
T Consensus 322 yl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 322 YLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 41 134688888999999999999999985 677899999999999999988764
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.4e-68 Score=507.73 Aligned_cols=374 Identities=54% Similarity=0.999 Sum_probs=339.5
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeC-CCCccccCCCccceeccchhcccC--cceeeccccCCccCC
Q 017099 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSN 80 (377)
Q Consensus 4 ~~~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~-~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~~ 80 (377)
.++.++||||+||.++|+||+|++.|++++|+++++.+ +...+......+.++|+++..... ...+++|+++|.+.|
T Consensus 3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~ 82 (444)
T COG5277 3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN 82 (444)
T ss_pred CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence 44555699999999999999999999999999999886 444444556778899999887765 578899999999999
Q ss_pred HHHHHHHHHHhccc--ccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCc--eEEEEe
Q 017099 81 WDDMEKIWHHTFYN--ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRT--TGIVLD 156 (377)
Q Consensus 81 ~~~~~~~~~~~~~~--~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--~~lVVD 156 (377)
|++++++|+|+|.. .+...+.++|+++++|++++...|+.+++++||.++++++++..+++|++|+.|.. +|||||
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD 162 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID 162 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999988 68888999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHh-----cCCCccCh---hHHHHHHHHhHhcc-------ee
Q 017099 157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTT---AEREIVRDMKEKLA-------YI 221 (377)
Q Consensus 157 iG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~v 221 (377)
+|++.|+|+||+||.++.++.+++++||++++.+|.++|.. +++.+... .+.+.++.+|.++| |+
T Consensus 163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~ 242 (444)
T COG5277 163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV 242 (444)
T ss_pred cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence 99999999999999999999999999999999999999998 66666654 56889999999999 88
Q ss_pred ecCHHHHHHHhcc----------------CCCccceEEcCCCceEeeCCc-cccccccCCCCC--CCCCCCCC-------
Q 017099 222 ALDYEQELETAKT----------------SSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPS--MIGMESAG------- 275 (377)
Q Consensus 222 ~~~~~~~~~~~~~----------------~~~~~~~~~~pd~~~i~i~~~-~~~~~e~lf~p~--~~~~~~~~------- 275 (377)
..+..++.+.... .......+..|+++.+.++.+ ||++||.+|.|. ..+.+..+
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~ 322 (444)
T COG5277 243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ 322 (444)
T ss_pred hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence 8776665554332 223456789999999999998 999999999999 65555555
Q ss_pred --------------------hhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCC
Q 017099 276 --------------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP 335 (377)
Q Consensus 276 --------------------l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~ 335 (377)
|++++.++|..+|.+.|+.|++|||||||+|++|||.+||++||+.+.|...++++..++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~ 402 (444)
T COG5277 323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPP 402 (444)
T ss_pred hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCC
Confidence 999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017099 336 ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377 (377)
Q Consensus 336 ~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
+|.+.+|+|||++|++..|..+||||+||+|+|+.++++|||
T Consensus 403 ~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 403 DPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred chhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999999999999986
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=1.4e-65 Score=445.99 Aligned_cols=362 Identities=30% Similarity=0.580 Sum_probs=327.1
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCc--ceeeccccCCccCCHHH
Q 017099 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 6 ~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~p~~~g~i~~~~~ 83 (377)
+.+|||+|.|++++|+|+++.+.|. ++|||+.+.++. .++.++|++..+..+. ..+++|+++|.+.+|+.
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~-------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t 73 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG-------RRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT 73 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc-------cchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence 4679999999999999999999998 679999877653 4567899988777543 56788999999999999
Q ss_pred HHHHHHHhcccc-cccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhc---C--------Cce
Q 017099 84 MEKIWHHTFYNE-LRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAS---G--------RTT 151 (377)
Q Consensus 84 ~~~~~~~~~~~~-L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~---g--------~~~ 151 (377)
..++|+++|.+. ..++.+++.+++++|.++-+...+...+++||+++|.+|+=.+.+.++++-. + ...
T Consensus 74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c 153 (400)
T KOG0680|consen 74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC 153 (400)
T ss_pred HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence 999999999654 4566789999999999999999999999999999999999988888887751 1 237
Q ss_pred EEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHH
Q 017099 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET 231 (377)
Q Consensus 152 ~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 231 (377)
++|||.|++.|.|+|+++|.+..++++++++||+.++..|++.+..+.+++.. +...++++|+..|||++|+.+.++.
T Consensus 154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHH
Confidence 99999999999999999999999999999999999999999999988888754 7788999999999999999999987
Q ss_pred hccC---CCccceEEcCC-------------------CceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCH
Q 017099 232 AKTS---SAVEKSYELPD-------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDV 289 (377)
Q Consensus 232 ~~~~---~~~~~~~~~pd-------------------~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~ 289 (377)
.... +.....|.+|| .+.+.+..|||.+||+||+|++++.++.||+|+|.++|..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 6554 23456677776 3577889999999999999999999999999999999999999
Q ss_pred HHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCC
Q 017099 290 DIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGP 369 (377)
Q Consensus 290 ~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~ 369 (377)
++|+.|+.|||++||++++|||.+||..||++++|.++.+++..|.||..-+|.||+-++..++|...||||+||+|+|+
T Consensus 312 ~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~ 391 (400)
T KOG0680|consen 312 EVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP 391 (400)
T ss_pred HHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 017099 370 SIVHRKCF 377 (377)
Q Consensus 370 ~~~~~k~~ 377 (377)
+.+.+|+|
T Consensus 392 ~~~~~~~~ 399 (400)
T KOG0680|consen 392 SWCTKKRF 399 (400)
T ss_pred hhhhhhcc
Confidence 99998876
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=1.4e-53 Score=393.72 Aligned_cols=363 Identities=29% Similarity=0.581 Sum_probs=313.4
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCc-ceeeccccCCccCCHHHHH
Q 017099 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 7 ~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~~~~~~~ 85 (377)
..|||||+||+.+|+|++|+..|+++|++.+.++++... +....+||++.....++ ...++|+...++++|+.+|
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~----~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E 98 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKL----GASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELME 98 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhcccccccc----ccccccccchhhhhhhhhccCCCCCcCCccccHHHHH
Confidence 678999999999999999999999999999999986543 22334688776554333 3568999999999999999
Q ss_pred HHHHHhcccccccCC--CCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhh-hcCC---ceEEEEeCCC
Q 017099 86 KIWHHTFYNELRVAP--EEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLY-ASGR---TTGIVLDSGD 159 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~--~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~-~~g~---~~~lVVDiG~ 159 (377)
++++|+| .+|+.+. -+||+++|++..+|...|..+.++|||.+|+|+|.+--+++.|+| -++. .+|+||++|+
T Consensus 99 ~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~ 177 (645)
T KOG0681|consen 99 QILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGH 177 (645)
T ss_pred HHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCC
Confidence 9999998 8899987 479999999999999999999999999999999999999999999 3343 3699999999
Q ss_pred CceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCC---
Q 017099 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSS--- 236 (377)
Q Consensus 160 ~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~--- 236 (377)
+.|.|.||.||..+....+++++||.+...||.++|+.++.-+........++.++..+||++.||.+++.......
T Consensus 178 ~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d 257 (645)
T KOG0681|consen 178 SATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYD 257 (645)
T ss_pred CcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999988777666666777899999999999988777543211000
Q ss_pred --------------------------------------------Cc--------------------------cceE---E
Q 017099 237 --------------------------------------------AV--------------------------EKSY---E 243 (377)
Q Consensus 237 --------------------------------------------~~--------------------------~~~~---~ 243 (377)
.. ...| .
T Consensus 258 ~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~ 337 (645)
T KOG0681|consen 258 ENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLN 337 (645)
T ss_pred ccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhc
Confidence 00 0000 0
Q ss_pred cCC-----------------------------------------------------------------------------
Q 017099 244 LPD----------------------------------------------------------------------------- 246 (377)
Q Consensus 244 ~pd----------------------------------------------------------------------------- 246 (377)
+|+
T Consensus 338 v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r 417 (645)
T KOG0681|consen 338 VPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDR 417 (645)
T ss_pred chhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 000
Q ss_pred --------------------------------------------------------------------------------
Q 017099 247 -------------------------------------------------------------------------------- 246 (377)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (377)
T Consensus 418 ~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d 497 (645)
T KOG0681|consen 418 KSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTD 497 (645)
T ss_pred hhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccC
Confidence
Q ss_pred ------------CceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHH
Q 017099 247 ------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 247 ------------~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~r 314 (377)
...+.++.+|+++||++|+|+++|.++.||.+++..++++.|.+.+..+.+||+||||+|++||+++|
T Consensus 498 ~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeR 577 (645)
T KOG0681|consen 498 PRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKER 577 (645)
T ss_pred cccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHH
Confidence 01455788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCccccc
Q 017099 315 MSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHR 374 (377)
Q Consensus 315 l~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~ 374 (377)
|.+||..+.|...++.|+.+.||.++||+||+.+|.-.+|...|+||+||+|+|++.++.
T Consensus 578 i~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kE 637 (645)
T KOG0681|consen 578 IKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKE 637 (645)
T ss_pred HHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987654
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=1.2e-51 Score=359.65 Aligned_cols=367 Identities=40% Similarity=0.688 Sum_probs=310.9
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCc--------cccCCCccceeccchhcccCcceeeccccCCcc
Q 017099 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV 78 (377)
Q Consensus 7 ~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i 78 (377)
+.++|+|+|+.++|.||+|...|++++|++++......+ .-+..+.++++|++++. .+.+.+.+|+++|.+
T Consensus 4 ~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~v 82 (415)
T KOG0678|consen 4 NLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQV 82 (415)
T ss_pred CCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceecccc
Confidence 455999999999999999999999999999876432211 11234568899999988 557889999999999
Q ss_pred CCHHHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcC--------Cc
Q 017099 79 SNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASG--------RT 150 (377)
Q Consensus 79 ~~~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~~ 150 (377)
.||+.++++|...+.++|...|++|-.++++|++++.+.|+.+.++.||.++++.+++.-++++|+-+.- .-
T Consensus 83 e~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l 162 (415)
T KOG0678|consen 83 EDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL 162 (415)
T ss_pred ccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 9999999999999989999999999999999999999999999999999999999999999998876442 35
Q ss_pred eEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHH
Q 017099 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELE 230 (377)
Q Consensus 151 ~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~ 230 (377)
+|+|||.|.+-|.|.||.+|+++-++++.+|+.|++++..+.++|++++...+.....+.++.+|+++||+.+|.-.+..
T Consensus 163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~ 242 (415)
T KOG0678|consen 163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA 242 (415)
T ss_pred eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999988888777777788999999999999998877766
Q ss_pred HhccCCCcc-ceE---EcCCC--ceEeeCCccccccccCCCCCCCCCC-CCChhHHHHHHHhcCCHHHHHhhhcCeEEec
Q 017099 231 TAKTSSAVE-KSY---ELPDG--QVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 303 (377)
Q Consensus 231 ~~~~~~~~~-~~~---~~pd~--~~i~i~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~G 303 (377)
++...+... +.| .+-.+ ..+.++.+||..+|++|.|.....+ ...|++.+...|++||+|+|+.|++||++.|
T Consensus 243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg 322 (415)
T KOG0678|consen 243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG 322 (415)
T ss_pred HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence 544322111 111 11122 2456788999999999999876544 5579999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHhhhCC--------------CCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCC
Q 017099 304 GSTMFPGIADRMSKEISALAP--------------SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGP 369 (377)
Q Consensus 304 G~s~i~g~~~rl~~el~~~~~--------------~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~ 369 (377)
|.+...+|..|++.++..+.. ....+.++...-..+++|-||+++++...|-..+=||++|+|+|+
T Consensus 323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~ 402 (415)
T KOG0678|consen 323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGP 402 (415)
T ss_pred chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhCh
Confidence 999999999999988865431 112355555556679999999999999999999999999999999
Q ss_pred ccccc
Q 017099 370 SIVHR 374 (377)
Q Consensus 370 ~~~~~ 374 (377)
+|++.
T Consensus 403 si~r~ 407 (415)
T KOG0678|consen 403 SICRT 407 (415)
T ss_pred hhhhc
Confidence 99864
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-40 Score=303.46 Aligned_cols=312 Identities=20% Similarity=0.393 Sum_probs=239.0
Q ss_pred cceeeccccCCccCC----------HHHHHHHHHHhcccccccCC---CCCcEEEEeCCCCCHHHHHHHHhhhcccCCCC
Q 017099 66 ILTLKYPIEHGIVSN----------WDDMEKIWHHTFYNELRVAP---EEHPILLTEAPLNPKANREKMTQIMFETFNAP 132 (377)
Q Consensus 66 ~~~~~~p~~~g~i~~----------~~~~~~~~~~~~~~~L~~~~---~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
.+.+++|+++|.+.- .+++.++|+|++.+.|++.+ .++.+|+++|..+.+.+.+.++.++|-+++|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 367899999998753 46789999999989999986 46899999999999999999999999999999
Q ss_pred eEEeechhhhhhhhcCCceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCc-----cChhH
Q 017099 133 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSF-----TTTAE 207 (377)
Q Consensus 133 ~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~-----~~~~~ 207 (377)
++.++.+++|++|++|.+++||||||+..|+|+||.||..+.++...+++||.+|++.|..+|++.+..+ ....+
T Consensus 258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d 337 (618)
T KOG0797|consen 258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID 337 (618)
T ss_pred eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999877654 44567
Q ss_pred HHHHHHHhHhcceeecCHHH-HHHHh--ccCCC--ccce--------------------------------EEcCCCc--
Q 017099 208 REIVRDMKEKLAYIALDYEQ-ELETA--KTSSA--VEKS--------------------------------YELPDGQ-- 248 (377)
Q Consensus 208 ~~~~~~ik~~~~~v~~~~~~-~~~~~--~~~~~--~~~~--------------------------------~~~pd~~-- 248 (377)
+.+++++|+++|........ ..... .+++. ...+ |..||.+
T Consensus 338 ~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~ 417 (618)
T KOG0797|consen 338 WLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDL 417 (618)
T ss_pred HHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccc
Confidence 89999999999987532111 00000 01000 0011 1222200
Q ss_pred ---------------------------eEeeC-CccccccccCCCCCC-----------------------------CCC
Q 017099 249 ---------------------------VITIG-AERFRCPEVLFQPSM-----------------------------IGM 271 (377)
Q Consensus 249 ---------------------------~i~i~-~~~~~~~e~lf~p~~-----------------------------~~~ 271 (377)
.+.+. ..|-..+|..-.+.+ .-.
T Consensus 418 fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~ 497 (618)
T KOG0797|consen 418 FDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYE 497 (618)
T ss_pred cchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceec
Confidence 00000 001111111111110 000
Q ss_pred C----CCChhHHHHHHHhcC-CHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCC----ceEEEECCC---CCcc
Q 017099 272 E----SAGIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS----MKIKVVAPP---ERKY 339 (377)
Q Consensus 272 ~----~~~l~~~I~~~i~~~-~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~----~~v~v~~~~---~~~~ 339 (377)
. ...+.+.|..+|..+ ..+.+++|.+.|.++||+...||+.+.|++.+....|.. ..|.|+.+| ||++
T Consensus 498 ~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~ 577 (618)
T KOG0797|consen 498 SFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQF 577 (618)
T ss_pred cccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchh
Confidence 0 124555677788776 678899999999999999999999999999988766652 146777665 7999
Q ss_pred ccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017099 340 SVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377 (377)
Q Consensus 340 ~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
-+|+||+|+|.++.-.++||++.||+-+|.++++.||.
T Consensus 578 VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 578 VAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred eEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 99999999999988899999999999999999999974
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=6.1e-38 Score=295.09 Aligned_cols=308 Identities=19% Similarity=0.242 Sum_probs=235.9
Q ss_pred cEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHHH
Q 017099 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~~~~~~ 84 (377)
.++||+||+++++|++++. +.+..||+++..+.. ++..++|++|.+.. ....+++|+++|.+.||+.+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 81 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEAT 81 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHH
Confidence 3999999999999998775 456689999876431 23568999987652 34578999999999999999
Q ss_pred HHHHHHhccccccc-CCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCC
Q 017099 85 EKIWHHTFYNELRV-APEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~-~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
+.+|++++.+.+.. .....++++++|..++...|+.+.+ +||.+|++.++++++|+||++++|. .+++|||+|
T Consensus 82 e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG 160 (335)
T PRK13930 82 EAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIG 160 (335)
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeC
Confidence 99999999444442 2336789999999999998888777 6799999999999999999999987 578999999
Q ss_pred CCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCc
Q 017099 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV 238 (377)
Q Consensus 159 ~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
+++|++++|.+|.++ .....++||+++++++.+++.++. .+.. ..+.++++|+++|++..+.+.+ .... ...
T Consensus 161 ~gttdvs~v~~g~~~--~~~~~~lGG~~id~~l~~~l~~~~-~~~~--~~~~ae~~K~~~~~~~~~~~~~--~~~~-~~~ 232 (335)
T PRK13930 161 GGTTEVAVISLGGIV--YSESIRVAGDEMDEAIVQYVRRKY-NLLI--GERTAEEIKIEIGSAYPLDEEE--SMEV-RGR 232 (335)
T ss_pred CCeEEEEEEEeCCEE--eecCcCchhHHHHHHHHHHHHHHh-CCCC--CHHHHHHHHHHhhcCcCCCCCc--eEEE-ECc
Confidence 999999999999887 456789999999999999987542 2211 2367999999999886553211 0000 000
Q ss_pred cceEEcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcC-eEEecCCCCCCChHHHHHH
Q 017099 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~n-Ivl~GG~s~i~g~~~rl~~ 317 (377)
...+.+|+ .+.++.+++ .|++|.+ ..++.+.|.++|.+++.+.+..+++| |+||||+|++|||.+||++
T Consensus 233 ~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~ 302 (335)
T PRK13930 233 DLVTGLPK--TIEISSEEV--REALAEP------LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSE 302 (335)
T ss_pred cCCCCCCe--eEEECHHHH--HHHHHHH------HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHH
Confidence 00111222 334444444 4777765 23588899999999999999899987 9999999999999999999
Q ss_pred HHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 318 EISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.. +++ ...+|..++-.||++++.-
T Consensus 303 ~~~~------~v~--~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 303 ETGL------PVH--IAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHCC------Cce--ecCCHHHHHHHHHHHHHhC
Confidence 9842 233 3456788899999998753
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.3e-36 Score=283.04 Aligned_cols=307 Identities=18% Similarity=0.247 Sum_probs=228.7
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHH
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~~~~~ 83 (377)
+.|+||+||+++|+|+++++. .+.+||+++.++.. ...+++|++|.... ....+.+|+++|.+.||+.
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~ 77 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDV 77 (334)
T ss_pred ceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHH
Confidence 359999999999999999876 56899999987542 23468999988762 4466889999999999999
Q ss_pred HHHHHHHhcccccccCCCCC-cEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeC
Q 017099 84 MEKIWHHTFYNELRVAPEEH-PILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDS 157 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~-~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 157 (377)
.+.+|++++.+.+.. ..++ .+++++|..++...| +.++.+|+.++++.+.++++|+||++++|. .+++|||+
T Consensus 78 ~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r-~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDi 155 (334)
T PRK13927 78 TEKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVER-RAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDI 155 (334)
T ss_pred HHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHH-HHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEe
Confidence 999999999776666 5545 577777766555554 557777899999999999999999999987 46799999
Q ss_pred CCCceEEEEe-eCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCC
Q 017099 158 GDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSS 236 (377)
Q Consensus 158 G~~~t~v~pv-~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~ 236 (377)
|+++|+++++ .+|....+ ..++||+++++++.+++.++. .+. .+.+.++++|+++|++..+.+.. .... .
T Consensus 156 Gggttdvs~v~~~~~~~~~---~~~lGG~~id~~l~~~l~~~~-~~~--~~~~~ae~iK~~~~~~~~~~~~~--~~~~-~ 226 (334)
T PRK13927 156 GGGTTEVAVISLGGIVYSK---SVRVGGDKFDEAIINYVRRNY-NLL--IGERTAERIKIEIGSAYPGDEVL--EMEV-R 226 (334)
T ss_pred CCCeEEEEEEecCCeEeeC---CcCChHHHHHHHHHHHHHHHh-CcC--cCHHHHHHHHHHhhccCCCCCCc--eEEE-e
Confidence 9999999999 66655433 358999999999999986432 221 13457999999999875432100 0000 0
Q ss_pred CccceEEcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhc-CeEEecCCCCCCChHHHH
Q 017099 237 AVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRM 315 (377)
Q Consensus 237 ~~~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~g~~~rl 315 (377)
.....+.+|+ .+.++.+++ .|++|.+ ..++.+.|.++|.+++.+.++.+++ +|+||||+|++|||.+||
T Consensus 227 ~~~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l 296 (334)
T PRK13927 227 GRDLVTGLPK--TITISSNEI--REALQEP------LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLL 296 (334)
T ss_pred CcccCCCCCe--EEEECHHHH--HHHHHHH------HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHH
Confidence 0000011111 344444444 4777665 2358889999999999888888887 599999999999999999
Q ss_pred HHHHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 316 SKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 316 ~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++++. .+++ ...+|..++-.||++++.-
T Consensus 297 ~~~~~------~~v~--~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 297 SEETG------LPVH--VAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHC------CCcE--ecCCHHHHHHHHHHHHHhh
Confidence 99983 1333 3456789999999998753
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.6e-35 Score=277.88 Aligned_cols=310 Identities=17% Similarity=0.217 Sum_probs=231.1
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcc----cCcceeeccccCCccCCHHHHH
Q 017099 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~~~ 85 (377)
+.||+||+++++...++ .-....||+++..++.+ +....-+++|++|... .....+++|+++|.+.||+..+
T Consensus 5 ~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECCC-CEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 99999999999865433 23345689887764321 1012346799998876 2456789999999999999999
Q ss_pred HHHHHhcccccccCCCC-CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCC
Q 017099 86 KIWHHTFYNELRVAPEE-HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 159 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~-~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~ 159 (377)
.+|++++.+.+...... .++++++|..++..+|+. ++.+|+.+|++.+.++++|+||++++|. .+++|||+|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 99999997665532222 369999999999999988 5557799999999999999999999997 6789999999
Q ss_pred CceEEEEe-eCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCc
Q 017099 160 GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV 238 (377)
Q Consensus 160 ~~t~v~pv-~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
++|++++| .+|..... ..++||+++++++.+++.++. .. ..+.+.++++|+++|++..+..+... ... ...
T Consensus 160 gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~-~~--~~~~~~ae~lK~~l~~~~~~~~~~~~-~~~-~~~ 231 (333)
T TIGR00904 160 GTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY-NL--LIGEQTAERIKIEIGSAYPLNDEPRK-MEV-RGR 231 (333)
T ss_pred CeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-cc--cCCHHHHHHHHHHHhccccccccccc-eee-cCc
Confidence 99999999 66665543 348999999999999886432 11 11346799999999987654211110 000 001
Q ss_pred cceEEcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhc-CeEEecCCCCCCChHHHHHH
Q 017099 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~g~~~rl~~ 317 (377)
...+.+|++. .++ +..+.|++|.| ..++.+.|.+++.+++.+.+..+++ +|+||||+|++|||.+||++
T Consensus 232 ~~~~~~~~~~--~i~--~~~~~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~ 301 (333)
T TIGR00904 232 DLVTGLPRTI--EIT--SVEVREALQEP------VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK 301 (333)
T ss_pred cccCCCCeEE--EEC--HHHHHHHHHHH------HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHH
Confidence 1123344443 333 22566888876 2358888999999999888888886 79999999999999999999
Q ss_pred HHhhhCCCCceEEEECCCCCccccchhhHHhhc
Q 017099 318 EISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 318 el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
++. +.+....+|..++-.||++++.
T Consensus 302 ~~~--------~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 302 ETG--------LPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHC--------CCceecCChHHHHHHHHHHHHh
Confidence 993 2334456788999999999864
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.3e-34 Score=271.29 Aligned_cols=302 Identities=17% Similarity=0.323 Sum_probs=228.3
Q ss_pred cEEEeCCCCceEEeeeCCCCCC-CCCCceEEeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHH
Q 017099 9 PLVCDNGTGMVKAGFAGDDAPR-AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~~P~-~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~~~~~ 83 (377)
.+.||+||+++++ |.. ..+. ...||+++..... ..-.+||++|.... ....+.+|+++|.+.||+.
T Consensus 6 ~~giDlGt~~~~i-~~~-~~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~ 76 (335)
T PRK13929 6 EIGIDLGTANILV-YSK-NKGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDM 76 (335)
T ss_pred eEEEEcccccEEE-EEC-CCcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHH
Confidence 5999999999998 332 2232 3468888764321 12357999998763 4466789999999999999
Q ss_pred HHHHHHHhccc---ccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcC-----CceEEEE
Q 017099 84 MEKIWHHTFYN---ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASG-----RTTGIVL 155 (377)
Q Consensus 84 ~~~~~~~~~~~---~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVV 155 (377)
.+.+|++++.+ .++......++++++|+.++..+|+.+.+ +++.+|++.+.++++|+||++++| ..+++||
T Consensus 77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvv 155 (335)
T PRK13929 77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVV 155 (335)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEE
Confidence 99999999863 46665656789999999999999999999 779999999999999999999997 4679999
Q ss_pred eCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccC
Q 017099 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS 235 (377)
Q Consensus 156 DiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|+|+++|+++++..|..+ .....++||++++++|.+++.+. +.+.. +...++++|+++|++..+..++.. ..
T Consensus 156 DiG~gtt~v~vi~~~~~~--~~~~~~~GG~~id~~l~~~l~~~-~~~~~--~~~~AE~iK~~l~~~~~~~~~~~~--~v- 227 (335)
T PRK13929 156 DIGGGTTEVAIISFGGVV--SCHSIRIGGDQLDEDIVSFVRKK-YNLLI--GERTAEQVKMEIGYALIEHEPETM--EV- 227 (335)
T ss_pred EeCCCeEEEEEEEeCCEE--EecCcCCHHHHHHHHHHHHHHHH-hCcCc--CHHHHHHHHHHHcCCCCCCCCceE--EE-
Confidence 999999999999555444 23456899999999999998653 22222 346799999999987544221100 00
Q ss_pred CCccceEEcCCCceEeeCCcccc--ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhc-CeEEecCCCCCCChH
Q 017099 236 SAVEKSYELPDGQVITIGAERFR--CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIA 312 (377)
Q Consensus 236 ~~~~~~~~~pd~~~i~i~~~~~~--~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~g~~ 312 (377)
......+.+| ..+.++.+++. +.|.+|+ +.+.|.++|.+++.+.+..+++ +|+||||+|++|||.
T Consensus 228 ~g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~ 295 (335)
T PRK13929 228 RGRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIK 295 (335)
T ss_pred eCCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHH
Confidence 0000011122 35666666665 4666654 8899999999999999988998 699999999999999
Q ss_pred HHHHHHHhhhCCCCceEEEECCCCCccccchhhHHh
Q 017099 313 DRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 313 ~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
++|++++.. +++ ...+|..++-.|+..+
T Consensus 296 e~l~~~~~~------~v~--~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 296 EWLSEEIVV------PVH--VAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHCC------Cce--eCCCHHHHHHHHHHHH
Confidence 999999942 333 3467889999998776
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=7.4e-33 Score=253.82 Aligned_cols=305 Identities=18% Similarity=0.264 Sum_probs=217.7
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcc----cCcceeeccccCCccCCHHH
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~ 83 (377)
+.+.||+||.+|++ |..+..=.+..||+++..+.. ..-..+|++|..+ .....+.+|+++|.|.|++.
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~ 73 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA 73 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence 56899999999999 444443334568888877653 3345689999876 34578999999999999999
Q ss_pred HHHHHHHhccccccc-CCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeC
Q 017099 84 MEKIWHHTFYNELRV-APEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDS 157 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~-~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 157 (377)
.+.++++++.+.++. ......++++.|...+..+|+.+.+.+ ..+|+..|+++++|+||++++|. ...+||||
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 999999999666654 345667999999999999999999999 56999999999999999999985 47899999
Q ss_pred CCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCC
Q 017099 158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA 237 (377)
Q Consensus 158 G~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
|+++|+++.+..|.++ ..+.+++||+++++.+.+++++++ ++. .....+|++|.+++++....++. ..
T Consensus 153 G~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~y-~l~--Ig~~tAE~iK~~~g~~~~~~~~~--~~----- 220 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREKY-NLL--IGERTAEKIKIEIGSASPPEEEE--SM----- 220 (326)
T ss_dssp -SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHHH-SEE----HHHHHHHHHHH-BSS--HHHH--EE-----
T ss_pred CCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHhh-Ccc--cCHHHHHHHHHhcceeeccCCCc--eE-----
Confidence 9999999999999998 678899999999999999998654 222 25678999999999875433221 10
Q ss_pred ccceEEcCCCceE--eeCC-ccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhc-CeEEecCCCCCCChHH
Q 017099 238 VEKSYELPDGQVI--TIGA-ERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIAD 313 (377)
Q Consensus 238 ~~~~~~~pd~~~i--~i~~-~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~g~~~ 313 (377)
.-....+-+|... .++. +-..+.+..+.. +.+.|.++|.++|.++...+++ +|+||||+|+++||.+
T Consensus 221 ~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~---------I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~ 291 (326)
T PF06723_consen 221 EVRGRDLITGLPKSIEITSSEVREAIEPPVDQ---------IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDE 291 (326)
T ss_dssp EEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHH
T ss_pred EEECccccCCCcEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHH
Confidence 0111122334322 2321 222333333333 8899999999999999988775 5999999999999999
Q ss_pred HHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhc
Q 017099 314 RMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 314 rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+|++++ .+.+...++|..++-.|+..+..
T Consensus 292 ~i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 292 YISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999 34555567889999999877654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.98 E-value=1.4e-31 Score=251.36 Aligned_cols=305 Identities=18% Similarity=0.284 Sum_probs=218.7
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHHHH
Q 017099 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~~~~~~~ 85 (377)
+.||+||.++++...++ .-.+..||.++..... +.-..+|++|.+.. ....+.+|+++|.+.||+..+
T Consensus 6 ~gIDlGt~~~~i~~~~~-~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~ 77 (336)
T PRK13928 6 IGIDLGTANVLVYVKGK-GIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE 77 (336)
T ss_pred eEEEcccccEEEEECCC-CEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence 99999999999965533 2333568888765332 12357899987762 345677999999999999999
Q ss_pred HHHHHhcccccccC-CCCCc-EEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCC
Q 017099 86 KIWHHTFYNELRVA-PEEHP-ILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 86 ~~~~~~~~~~L~~~-~~~~~-vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
.+|++++ +.+... ...+| +++++|..++..+|+. ++.+++.+|++.+.++++|+||++++|. .+++|||+|
T Consensus 78 ~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~~-~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG 155 (336)
T PRK13928 78 KMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKRA-VREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG 155 (336)
T ss_pred HHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHHH-HHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence 9999998 444332 34566 8899988877765555 5555699999999999999999999986 679999999
Q ss_pred CCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCc
Q 017099 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV 238 (377)
Q Consensus 159 ~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
+++|+++++..|..+. ....++||+++++.+.+++.++. .+. .....++++|++++.+..+..++ .... ...
T Consensus 156 ggttdvsvv~~g~~~~--~~~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~~~~~~--~~~v-~g~ 227 (336)
T PRK13928 156 GGTTDIAVLSLGGIVT--SSSIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFPGAREE--EMEI-RGR 227 (336)
T ss_pred CCeEEEEEEEeCCEEE--eCCcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhcccccccCCc--EEEE-ecc
Confidence 9999999999997774 34679999999999999986432 221 12356999999988764321100 0000 000
Q ss_pred cceEEcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhc-CeEEecCCCCCCChHHHHHH
Q 017099 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~g~~~rl~~ 317 (377)
.....+|. .+.++.+++. |+++.+ ...+.+.|.+++.+++.+.+...++ +|+||||+|++||+.++|++
T Consensus 228 ~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~ 297 (336)
T PRK13928 228 DLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAE 297 (336)
T ss_pred cccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHH
Confidence 00001111 2334433332 444433 1237788889999998888888887 79999999999999999999
Q ss_pred HHhhhCCCCceEEEECCCCCccccchhhHHhhc
Q 017099 318 EISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 318 el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
++.. +++ ...+|..++-.||++++.
T Consensus 298 ~~~~------~v~--~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 298 ETKV------PVY--IAEDPISCVALGTGKMLE 322 (336)
T ss_pred HHCC------Cce--ecCCHHHHHHHHHHHHHh
Confidence 9942 233 345788999999999864
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.95 E-value=7e-27 Score=206.61 Aligned_cols=310 Identities=18% Similarity=0.219 Sum_probs=226.6
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcc----cCcceeeccccCCccCCHH
Q 017099 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 7 ~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~ 82 (377)
.+.|.||+||.+|++- .-+..--...||.++...... ...-..+|++|+.+ .+.....+|+++|++.|++
T Consensus 6 s~diGIDLGTanTlV~-~k~kgIVl~ePSVVAi~~~~~-----~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~ 79 (342)
T COG1077 6 SNDIGIDLGTANTLVY-VKGKGIVLNEPSVVAIESEGK-----TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE 79 (342)
T ss_pred cccceeeecccceEEE-EcCceEEecCceEEEEeecCC-----CceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence 4589999999999994 333344446788887765311 23356799999987 3456789999999999999
Q ss_pred HHHHHHHHhcccccccC--CCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEE
Q 017099 83 DMEKIWHHTFYNELRVA--PEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVL 155 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~--~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVV 155 (377)
..+.+++|..++..+-. ...-+++++.|.-....+|+.+.+.+ +..+...|+++++|.+|++++|. +..+||
T Consensus 80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv 158 (342)
T COG1077 80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV 158 (342)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence 99999998875444222 23345899999999999999999999 77999999999999999999986 458999
Q ss_pred eCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccC
Q 017099 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS 235 (377)
Q Consensus 156 DiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|||+++|+|+.+..|-++ ...+..+||+.+++.+.+++++++.-.. ....++++|.+.+++..+...+..+..-
T Consensus 159 DIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~~nl~I---Ge~taE~iK~eiG~a~~~~~~~~~~~eV- 232 (342)
T COG1077 159 DIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKKYNLLI---GERTAEKIKIEIGSAYPEEEDEELEMEV- 232 (342)
T ss_pred EeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHHhCeee---cHHHHHHHHHHhcccccccCCccceeeE-
Confidence 999999999999999888 6678899999999999999976533322 3456999999999886532211000000
Q ss_pred CCccceEEcCCCceEeeCCc--cccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcC-eEEecCCCCCCChH
Q 017099 236 SAVEKSYELPDGQVITIGAE--RFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIA 312 (377)
Q Consensus 236 ~~~~~~~~~pd~~~i~i~~~--~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~n-Ivl~GG~s~i~g~~ 312 (377)
......--+|. .+.++.+ +....|.+ ..|.+.|...+.++|.++-....++ |++|||+|++.|++
T Consensus 233 ~Grdl~~GlPk--~i~i~s~ev~eal~~~v----------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD 300 (342)
T COG1077 233 RGRDLVTGLPK--TITINSEEIAEALEEPL----------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLD 300 (342)
T ss_pred EeeecccCCCe--eEEEcHHHHHHHHHHHH----------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCch
Confidence 00000001111 1222221 11222222 3488888899999999999999998 99999999999999
Q ss_pred HHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhh
Q 017099 313 DRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 313 ~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+.|.+|. .+.++-.++|-..+-+|+....
T Consensus 301 ~~i~~et--------~~pv~ia~~pL~~Va~G~G~~l 329 (342)
T COG1077 301 RLLSEET--------GVPVIIADDPLTCVAKGTGKAL 329 (342)
T ss_pred HhHHhcc--------CCeEEECCChHHHHHhccchhh
Confidence 9999887 4555556778777777765543
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.88 E-value=9.4e-22 Score=175.06 Aligned_cols=210 Identities=16% Similarity=0.188 Sum_probs=158.3
Q ss_pred eccccCCccCCHHHHHHHHHHhcccc-cccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcC
Q 017099 70 KYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASG 148 (377)
Q Consensus 70 ~~p~~~g~i~~~~~~~~~~~~~~~~~-L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g 148 (377)
..|+++|.|.|++..+.+++++.... -.....-..+++++|..++..+|+.+.+.+ +..|++.+.++++|+|++++++
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~ 106 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQ 106 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhc
Confidence 57899999999999999999997321 112223468999999999999999888777 8899999999999999999988
Q ss_pred CceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHH
Q 017099 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE 228 (377)
Q Consensus 149 ~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~ 228 (377)
....+|+|+|+++|+++.+.+|.++ .....++||+++++.+.+.+. .+.+.+|++|..++. . ++
T Consensus 107 ~~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~~----~-~~ 170 (239)
T TIGR02529 107 IKNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHKD----E-EE 170 (239)
T ss_pred CCCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcCC----H-HH
Confidence 8888999999999999999999888 567789999999999876652 134668888887552 1 11
Q ss_pred HHHhccCCCccceEEcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCC
Q 017099 229 LETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF 308 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i 308 (377)
.. ...+.+.. .+.+.|.+.+.+.+. +.|+||||+|++
T Consensus 171 ~~---------------------------~~i~~~~~---------~i~~~i~~~l~~~~~-------~~v~LtGG~a~i 207 (239)
T TIGR02529 171 IF---------------------------PVVKPVYQ---------KMASIVKRHIEGQGV-------KDLYLVGGACSF 207 (239)
T ss_pred HH---------------------------HHHHHHHH---------HHHHHHHHHHHhCCC-------CEEEEECchhcc
Confidence 10 00011111 144455555554433 479999999999
Q ss_pred CChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHH
Q 017099 309 PGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 309 ~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
||+.+.|++.+. +.+..+.+|.+++-.|+++
T Consensus 208 pgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 208 SGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 999999999883 2233467889999999864
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.83 E-value=6.3e-19 Score=159.67 Aligned_cols=243 Identities=15% Similarity=0.141 Sum_probs=172.4
Q ss_pred CCCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHH
Q 017099 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 5 ~~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~ 84 (377)
...-.++||+||+.+|+=.+ +..+. .++ +|. ..+.+++.|.+.|++..
T Consensus 22 ~~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a 69 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGA 69 (267)
T ss_pred CCCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHH
Confidence 34566999999999997554 32222 111 121 23567899999999998
Q ss_pred HHHHHHhcc---cccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCc
Q 017099 85 EKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 85 ~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
.+.++++.. +.++.. -..++++.|.......+..+.+++ +..|++...++.++.+++.+++...++|||+|+++
T Consensus 70 ~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~~-~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggt 146 (267)
T PRK15080 70 VTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINVV-ESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGT 146 (267)
T ss_pred HHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHHH-HHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCc
Confidence 888888763 133432 356778899888777788777555 88999999999999999998887778999999999
Q ss_pred eEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccce
Q 017099 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKS 241 (377)
Q Consensus 162 t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
|+++.+.+|.++ .....++||+++++.+.+.+. . +.+.+|++|..... . ++..
T Consensus 147 t~i~v~~~g~~~--~~~~~~~GG~~it~~Ia~~l~---i------~~~eAE~lK~~~~~----~-~~~~----------- 199 (267)
T PRK15080 147 TGISILKDGKVV--YSADEPTGGTHMSLVLAGAYG---I------SFEEAEQYKRDPKH----H-KEIF----------- 199 (267)
T ss_pred EEEEEEECCeEE--EEecccCchHHHHHHHHHHhC---C------CHHHHHHHHhccCC----H-HHHH-----------
Confidence 999999999887 456789999999999987762 1 34567888876431 0 0000
Q ss_pred EEcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhh
Q 017099 242 YELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 242 ~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~ 321 (377)
.+.+.++.. +.+.|.+.+.+. -.+.|+||||+|++||+.+.+++.+..
T Consensus 200 ----------------~ii~~~~~~---------i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~ 247 (267)
T PRK15080 200 ----------------PVVKPVVEK---------MASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL 247 (267)
T ss_pred ----------------HHHHHHHHH---------HHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC
Confidence 000111111 334444444432 346899999999999999999999832
Q ss_pred hCCCCceEEEECCCCCccccchhhHHhh
Q 017099 322 LAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+++ .+++|.+++-.|+++|+
T Consensus 248 ------~v~--~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 ------PVH--KPQHPLFVTPLGIALSC 267 (267)
T ss_pred ------Ccc--cCCCchHHHHHHHHhhC
Confidence 222 35788999999998874
No 26
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.82 E-value=4.5e-20 Score=185.18 Aligned_cols=300 Identities=21% Similarity=0.218 Sum_probs=180.1
Q ss_pred cEEEeCCCCceEEeeeCCCCCC--------CCCCceEEeeCCCCccccCCCccceeccchhcc------cCcceeec---
Q 017099 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY--- 71 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~--- 71 (377)
+|.||+||+++.+++..+..|. ..+||+++...+ ....||..|... .....+++
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG 71 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD---------GGVEVGKEALAAAAEDPKNTISSVKRLMG 71 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence 4899999999999987655444 345666655322 245677766432 01111111
Q ss_pred ------------cc--------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEEeCCCCCHHHHHHHH
Q 017099 72 ------------PI--------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMT 122 (377)
Q Consensus 72 ------------p~--------------~~g~i~~~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~~l~ 122 (377)
|+ ..+.+.-.+....+++++.. ..++. .-..+|+++|..++..+|+.+.
T Consensus 72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~--~v~~~VItVPa~f~~~qR~a~~ 149 (599)
T TIGR01991 72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGG--DLVGAVITVPAYFDDAQRQATK 149 (599)
T ss_pred CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHH
Confidence 11 11222223334445544421 23332 2357999999999999999988
Q ss_pred hhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cCCceEEEcccHHHHHHHHHHH
Q 017099 123 QIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKI 194 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--~g~~-l~~~~~~~~~GG~~l~~~l~~~ 194 (377)
+.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.++
T Consensus 150 ~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 150 DAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 887 88999999999999999998863 4689999999999998774 3322 1122234589999999999998
Q ss_pred HHhc-CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCCCceEeeCCccccccccCCCCCC
Q 017099 195 LTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSM 268 (377)
Q Consensus 195 l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~ 268 (377)
+.++ +.+...... ...++..|+.++. .......+.. +|..+.+.-.|..+ |-++.|-
T Consensus 229 l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~--------------~~~~~i~i~~-~g~~~~~~itr~ef-e~l~~~l- 291 (599)
T TIGR01991 229 ILKQLGISADLNPEDQRLLLQAARAAKEALTD--------------AESVEVDFTL-DGKDFKGKLTRDEF-EALIQPL- 291 (599)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCC--------------CceEEEEEEE-CCcEEEEEEeHHHH-HHHHHHH-
Confidence 8654 332211111 1123444444331 1111122222 33333332222222 2222220
Q ss_pred CCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHh
Q 017099 269 IGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 269 ~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
...+.+.|.+++.... +...-++.|+||||+|++|++++.+++.+.. .+....+|+.++-.||+++
T Consensus 292 ----l~~i~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~ 357 (599)
T TIGR01991 292 ----VQKTLSICRRALRDAG--LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQ 357 (599)
T ss_pred ----HHHHHHHHHHHHHHcC--CChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHH
Confidence 0014445555554432 2234468899999999999999999877632 1223467899999999999
Q ss_pred hcc
Q 017099 349 ASL 351 (377)
Q Consensus 349 a~l 351 (377)
|..
T Consensus 358 a~~ 360 (599)
T TIGR01991 358 ADL 360 (599)
T ss_pred HHH
Confidence 875
No 27
>CHL00094 dnaK heat shock protein 70
Probab=99.82 E-value=1.3e-19 Score=182.84 Aligned_cols=297 Identities=19% Similarity=0.220 Sum_probs=179.1
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceEEeeCCCCccccCCCccceeccchhcc------cCcceeeccc
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPI 73 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~ 73 (377)
..|.||+||+++++++..+..|. ..+||+++... +...++|+.|.+. .....+++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli 73 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTK---------KGDLLVGQIAKRQAVINPENTFYSVKRFI 73 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcC---------CCCEEECHHHHHhHHhCccceehhhHHhc
Confidence 58999999999999998666554 23455554422 1235566655431 0111111111
Q ss_pred c-------------------------------CC-ccCCHHHHHHHHHHhcc---cccccCCCCCcEEEEeCCCCCHHHH
Q 017099 74 E-------------------------------HG-IVSNWDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANR 118 (377)
Q Consensus 74 ~-------------------------------~g-~i~~~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~ 118 (377)
. .| .+...+....+++++.. ..++. .-..+|+++|..++..+|
T Consensus 74 G~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR 151 (621)
T CHL00094 74 GRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQR 151 (621)
T ss_pred CCChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence 1 11 12223334455555432 22322 235699999999999999
Q ss_pred HHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCee---cCCceEEEcccHHHHHHH
Q 017099 119 EKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~~g~~---l~~~~~~~~~GG~~l~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+..+.. +..+....++||.++++.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~ 230 (621)
T CHL00094 152 QATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK 230 (621)
T ss_pred HHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence 9988877 88999999999999999999874 46899999999999998754422 122233568999999999
Q ss_pred HHHHHHhc-----CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcC------CC-ceEe--
Q 017099 191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP------DG-QVIT-- 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p------d~-~~i~-- 251 (377)
|.+++.++ +.+...... ...++.+|..++... ...+.+| +| ..+.
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 294 (621)
T CHL00094 231 IVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT----------------QTEINLPFITATQTGPKHIEKT 294 (621)
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeecccCCCCCeeEEEE
Confidence 99877543 222211100 133555666554210 1112111 01 1222
Q ss_pred eCCcccc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEE
Q 017099 252 IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~ 330 (377)
+...+|. ..+.++.. +...|.+++.+.. +...-++.|+||||+|++|++++.|++.+.. .
T Consensus 295 itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~ 355 (621)
T CHL00094 295 LTRAKFEELCSDLINR---------CRIPVENALKDAK--LDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------K 355 (621)
T ss_pred EcHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCcEEEEECCccCChHHHHHHHHHhCC--------C
Confidence 3333222 11222211 3334445554432 2334558899999999999999999887642 1
Q ss_pred EECCCCCccccchhhHHhhcc
Q 017099 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++..||+++|..
T Consensus 356 ~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 356 PNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred cCcCCCchhHHHhhhHHHHHH
Confidence 233457789999999999874
No 28
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.81 E-value=2.4e-19 Score=181.60 Aligned_cols=216 Identities=18% Similarity=0.239 Sum_probs=141.4
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-c
Q 017099 102 EHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 102 ~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--~g~~-l 173 (377)
-..+|+++|.+++..+|+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 357999999999999999988877 88999999999999999999875 4789999999999998764 5533 2
Q ss_pred CCceEEEcccHHHHHHHHHHHHHhc-----CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccce--
Q 017099 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKS-- 241 (377)
Q Consensus 174 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~-- 241 (377)
..+....++||.++++.|.+++.++ +.+...... ...++..|+.++.- ......
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~--------------~~~~i~i~ 318 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSK--------------TQTEINLP 318 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCC--------------CceEEEEE
Confidence 2233456899999999999887643 222211100 12345555554321 001111
Q ss_pred EEcCC--C-c--eEeeCCcccc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHH
Q 017099 242 YELPD--G-Q--VITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM 315 (377)
Q Consensus 242 ~~~pd--~-~--~i~i~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl 315 (377)
+...| | . .+.++.+.|. ..+.+|.. +.+.|.+++.+.. +.+.-++.|+||||+|++|++++.|
T Consensus 319 ~~~~d~~g~~~~~~~itR~efe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l 387 (663)
T PTZ00400 319 FITADQSGPKHLQIKLSRAKLEELTHDLLKK---------TIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSETV 387 (663)
T ss_pred eeccCCCCceEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHHHH
Confidence 11111 1 1 2233333332 22223322 4455556665543 2234468899999999999999998
Q ss_pred HHHHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 316 SKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 316 ~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.+.. .+....+|+.++-.||+++|..
T Consensus 388 ~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 388 KKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 877632 1223457889999999999864
No 29
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.81 E-value=4.1e-19 Score=177.27 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=140.0
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cC
Q 017099 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP 174 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--~g~~-l~ 174 (377)
..+|+++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +.
T Consensus 142 ~~aVITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~ 220 (595)
T PRK01433 142 TKAVITVPAHFNDAARGEVMLAA-KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVI 220 (595)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence 57999999999999999988877 88999999999999999999874 4579999999999998764 4422 22
Q ss_pred CceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCCCceEeeCC
Q 017099 175 HAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGA 254 (377)
Q Consensus 175 ~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd~~~i~i~~ 254 (377)
.+.....+||.+++..|.+++..+............++..|+.++.-. .+.. ..+.++.
T Consensus 221 at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~------------------~~~~---~~~~itr 279 (595)
T PRK01433 221 ATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD------------------SFNN---DNISINK 279 (595)
T ss_pred EEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc------------------cccc---ceEEEcH
Confidence 222345799999999999988754211111112234555565543210 0111 1344444
Q ss_pred cccc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEEC
Q 017099 255 ERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA 333 (377)
Q Consensus 255 ~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~ 333 (377)
+.|. ..+.+|.. +.+.|.+++.... ..-++.|+||||+|++|.+++.|.+.+.. .+..
T Consensus 280 ~efe~l~~~l~~~---------~~~~i~~~L~~a~----~~~Id~ViLvGGssriP~v~~~l~~~f~~--------~~~~ 338 (595)
T PRK01433 280 QTLEQLILPLVER---------TINIAQECLEQAG----NPNIDGVILVGGATRIPLIKDELYKAFKV--------DILS 338 (595)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHhhcC----cccCcEEEEECCcccChhHHHHHHHHhCC--------Ccee
Confidence 4432 22333322 4445555555443 23358899999999999999888877631 2334
Q ss_pred CCCCccccchhhHHhhcc
Q 017099 334 PPERKYSVWIGGSILASL 351 (377)
Q Consensus 334 ~~~~~~~~w~Gasi~a~l 351 (377)
+.+|..++-.||+++|..
T Consensus 339 ~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 339 DIDPDKAVVWGAALQAEN 356 (595)
T ss_pred cCCchHHHHHHHHHHHHH
Confidence 567899999999999875
No 30
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.81 E-value=2.7e-19 Score=181.38 Aligned_cols=297 Identities=18% Similarity=0.213 Sum_probs=179.5
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceEEeeCCCCccccCCCccceeccchhcc------cCcceeeccc
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPI 73 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~ 73 (377)
.+|.||+||+++++++..+..|. ..+||+++... +...++|+.|... +..+.+++.+
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli 110 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK---------NGDRLVGQIAKRQAVVNPENTFFSVKRFI 110 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcC---------CCCEEECHHHHHhhhhCchhhhHHHHHhh
Confidence 57999999999999998666554 23455554422 1235566665432 0111111111
Q ss_pred c-------------------------------CC-ccCCHHHHHHHHHHhcc---cccccCCCCCcEEEEeCCCCCHHHH
Q 017099 74 E-------------------------------HG-IVSNWDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANR 118 (377)
Q Consensus 74 ~-------------------------------~g-~i~~~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~ 118 (377)
. .| .+...+....+++++.. ..++. .-..+||++|..++..+|
T Consensus 111 G~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR 188 (673)
T PLN03184 111 GRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQR 188 (673)
T ss_pred CCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence 1 11 12223344555555532 22332 235799999999999999
Q ss_pred HHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCC--ee-cCCceEEEcccHHHHHHH
Q 017099 119 EKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEG--YA-LPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~~g--~~-l~~~~~~~~~GG~~l~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+.-+ .. +..+....++||.++++.
T Consensus 189 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~ 267 (673)
T PLN03184 189 TATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 267 (673)
T ss_pred HHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence 9988777 88999999999999999998874 468999999999999876433 21 122223468999999999
Q ss_pred HHHHHHhc-----CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcC------CC-ceEe--
Q 017099 191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP------DG-QVIT-- 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p------d~-~~i~-- 251 (377)
|.+++.++ +.+...... ...++..|+.++... ...+.++ ++ ..+.
T Consensus 268 L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 331 (673)
T PLN03184 268 IVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT----------------QTSISLPFITATADGPKHIDTT 331 (673)
T ss_pred HHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------cceEEEEeeeccCCCCceEEEE
Confidence 99887543 111111100 223445555544211 1111111 11 2233
Q ss_pred eCCcccc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEE
Q 017099 252 IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~ 330 (377)
+..+.|. ..+.++.. +.+.|.+++.....+ ..-++.|+||||+|++|.++++|++.+.. .
T Consensus 332 itR~~fe~l~~~l~~r---------~~~~i~~~L~~a~~~--~~dId~ViLvGGssriP~V~~~i~~~fg~--------~ 392 (673)
T PLN03184 332 LTRAKFEELCSDLLDR---------CKTPVENALRDAKLS--FKDIDEVILVGGSTRIPAVQELVKKLTGK--------D 392 (673)
T ss_pred ECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCC--hhHccEEEEECCccccHHHHHHHHHHhCC--------C
Confidence 3333332 22222222 444555555544322 23458899999999999999999877732 1
Q ss_pred EECCCCCccccchhhHHhhcc
Q 017099 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++-.||+++|..
T Consensus 393 ~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 393 PNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred cccccCcchHHHHHHHHHHHH
Confidence 122346789999999999874
No 31
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.81 E-value=1.9e-19 Score=182.23 Aligned_cols=297 Identities=17% Similarity=0.205 Sum_probs=178.7
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceEEeeCCCCccccCCCccceeccchhcc------cCcceeeccc
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPI 73 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~ 73 (377)
.+|.||+||+++++++..+..|. ..+||+++... +...++|++|... +..+.+++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~~i~~~Kr~i 73 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTK---------DGERLVGQPAKRQAVTNPENTIFSIKRLM 73 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeC---------CCCEEEcHHHHHhhhhCchhhHHHHHHHh
Confidence 57999999999999998655443 34566665432 2245677665432 0111122222
Q ss_pred cC-----------------------------CccCCH-HHHHHHHHHhc---ccccccCCCCCcEEEEeCCCCCHHHHHH
Q 017099 74 EH-----------------------------GIVSNW-DDMEKIWHHTF---YNELRVAPEEHPILLTEAPLNPKANREK 120 (377)
Q Consensus 74 ~~-----------------------------g~i~~~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~ 120 (377)
.. |..... +....+++++. ...++. .-..+|+++|..++..+|+.
T Consensus 74 G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~--~v~~~VItVPa~f~~~qR~a 151 (627)
T PRK00290 74 GRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGE--KVTEAVITVPAYFNDAQRQA 151 (627)
T ss_pred CCCchHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CCceEEEEECCCCCHHHHHH
Confidence 11 111222 22334444432 122332 23579999999999999999
Q ss_pred HHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCe--e-cCCceEEEcccHHHHHHHHH
Q 017099 121 MTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGY--A-LPHAILRLDLAGRDLTDALM 192 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~~g~--~-l~~~~~~~~~GG~~l~~~l~ 192 (377)
+.+.+ +..|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+.-+. . +..+....++||.+++..|.
T Consensus 152 ~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 230 (627)
T PRK00290 152 TKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRII 230 (627)
T ss_pred HHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHH
Confidence 88777 88999999999999999998864 5689999999999998764431 1 12222346899999999999
Q ss_pred HHHHhc-----CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEc----CC--C-ce--EeeC
Q 017099 193 KILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYEL----PD--G-QV--ITIG 253 (377)
Q Consensus 193 ~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----pd--~-~~--i~i~ 253 (377)
+++.++ +.++..... ...++..|+.++.- ....+.+ .| | .. +.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~----------------~~~~i~i~~~~~d~~g~~~~~~~it 294 (627)
T PRK00290 231 DYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSA----------------QQTEINLPFITADASGPKHLEIKLT 294 (627)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CeEEEEEeecccCCCCCeEEEEEEC
Confidence 887542 222211100 12344455544321 1111211 11 1 22 2333
Q ss_pred Ccccc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEE
Q 017099 254 AERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVV 332 (377)
Q Consensus 254 ~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~ 332 (377)
.+.|. ..+.++.. +.+.|.+++..... ...-++.|+||||+|++|.++++|++.+.. .+.
T Consensus 295 R~~fe~l~~~l~~~---------~~~~i~~~l~~a~~--~~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~ 355 (627)
T PRK00290 295 RAKFEELTEDLVER---------TIEPCKQALKDAGL--SVSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPN 355 (627)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCC
Confidence 33332 22222222 44555555554432 233468899999999999999999887632 123
Q ss_pred CCCCCccccchhhHHhhcc
Q 017099 333 APPERKYSVWIGGSILASL 351 (377)
Q Consensus 333 ~~~~~~~~~w~Gasi~a~l 351 (377)
...+|+.++..||+++|..
T Consensus 356 ~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 356 KGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred cCcCChHHHHHhHHHHHHH
Confidence 3457889999999999864
No 32
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.80 E-value=2.7e-19 Score=180.40 Aligned_cols=296 Identities=17% Similarity=0.220 Sum_probs=177.9
Q ss_pred cEEEeCCCCceEEeeeCCCCCC--------CCCCceEEeeCCCCccccCCCccceeccchhcc------cCcceeecccc
Q 017099 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPIE 74 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~~ 74 (377)
+|.||+||+++++++..+..|. ..+||+++... +...++|+.|... .....+++.+.
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~---------~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG 72 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTK---------NGERLVGQPAKRQAVTNPENTIYSIKRFMG 72 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeC---------CCCEEECHHHHHhhhhCchhhhHHHHHHhC
Confidence 6899999999999998666554 24455554432 2245677766542 11112222221
Q ss_pred C----------------------------CccCCH-HHHHHHHHHhc---ccccccCCCCCcEEEEeCCCCCHHHHHHHH
Q 017099 75 H----------------------------GIVSNW-DDMEKIWHHTF---YNELRVAPEEHPILLTEAPLNPKANREKMT 122 (377)
Q Consensus 75 ~----------------------------g~i~~~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~ 122 (377)
. |..... +....+++++. ...++. .-..+++++|..++..+|+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~--~v~~~VItVPa~f~~~qR~a~~ 150 (595)
T TIGR02350 73 RRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGE--KVTEAVITVPAYFNDAQRQATK 150 (595)
T ss_pred CCchHHHHHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHH
Confidence 1 111122 22334444432 122332 2256999999999999999988
Q ss_pred hhhcccCCCCeEEeechhhhhhhhcCC------ceEEEEeCCCCceEEEEeeC--Cee-cCCceEEEcccHHHHHHHHHH
Q 017099 123 QIMFETFNAPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDALMK 193 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~pv~~--g~~-l~~~~~~~~~GG~~l~~~l~~ 193 (377)
+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+.- |.. +..+.....+||.++++.|.+
T Consensus 151 ~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 151 DAG-KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HHH-HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 877 88999999999999999998763 46899999999999987643 322 122223458999999999998
Q ss_pred HHHhc-----CCCccChh-H----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcC----C--C-ce--EeeCC
Q 017099 194 ILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP----D--G-QV--ITIGA 254 (377)
Q Consensus 194 ~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p----d--~-~~--i~i~~ 254 (377)
++.++ +.++.... . ...++..|..++.. ....+.+| | | .. +.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~~~~~g~~~~~~~itr 293 (595)
T TIGR02350 230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSV----------------LSTEINLPFITADASGPKHLEMTLTR 293 (595)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CceEEEeeecccCCCCCeeEEEEEeH
Confidence 87532 22221110 0 12345555554421 11111111 1 1 22 23333
Q ss_pred cccc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEEC
Q 017099 255 ERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA 333 (377)
Q Consensus 255 ~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~ 333 (377)
+.|. ..+.++.. +.+.|.+++.+.. +...-++.|+|+||+|++|.+++.+++.+.. .+..
T Consensus 294 ~~fe~l~~~l~~~---------~~~~i~~~l~~a~--~~~~~i~~V~LvGGssriP~v~~~i~~~f~~--------~~~~ 354 (595)
T TIGR02350 294 AKFEELTADLVER---------TKEPVRQALKDAG--LSASDIDEVILVGGSTRIPAVQELVKDFFGK--------EPNK 354 (595)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHhHCcEEEEECCcccChHHHHHHHHHhCC--------cccC
Confidence 3332 22222222 4445555555442 2234468899999999999999998876632 2334
Q ss_pred CCCCccccchhhHHhhcc
Q 017099 334 PPERKYSVWIGGSILASL 351 (377)
Q Consensus 334 ~~~~~~~~w~Gasi~a~l 351 (377)
..+|+.++..||+++|..
T Consensus 355 ~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 355 SVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred CcCcHHHHHHHHHHHHHH
Confidence 567889999999999864
No 33
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.80 E-value=5.3e-19 Score=177.97 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=140.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cC
Q 017099 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP 174 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--~g~~-l~ 174 (377)
..+||++|.+++..+|+.+.+.+ +.+|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +.
T Consensus 161 ~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 57999999999999999988777 88999999999999999999874 4689999999999998775 5643 22
Q ss_pred CceEEEcccHHHHHHHHHHHHHhc-----CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEc
Q 017099 175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYEL 244 (377)
Q Consensus 175 ~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 244 (377)
.+....++||.++++.|.+++.++ +.+...... ...+++.|..++.... ......+..
T Consensus 240 at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~------------~~i~i~~i~ 307 (657)
T PTZ00186 240 ATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME------------TEVNLPFIT 307 (657)
T ss_pred EecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc------------eEEEEeeec
Confidence 223356899999999999877542 222211000 1235555555543110 000111111
Q ss_pred C--CC---ceEeeCCcccc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHH
Q 017099 245 P--DG---QVITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKE 318 (377)
Q Consensus 245 p--d~---~~i~i~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~e 318 (377)
. +| ..+.++.+.|. ..+.|+.. +.+.+.+++.... +...-++.|+||||+|+||.+++.+.+.
T Consensus 308 ~~~~g~~~~~~~ItR~efe~l~~~l~~r---------~~~~v~~~L~~a~--~~~~dId~VvLVGGssriP~V~~~l~~~ 376 (657)
T PTZ00186 308 ANADGAQHIQMHISRSKFEGITQRLIER---------SIAPCKQCMKDAG--VELKEINDVVLVGGMTRMPKVVEEVKKF 376 (657)
T ss_pred cCCCCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCCEEEEECCcccChHHHHHHHHH
Confidence 1 11 12333433332 22223322 3444445554432 2234567899999999999999999877
Q ss_pred HhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 319 ISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 319 l~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+... .....+|+.++..||+++|..
T Consensus 377 fg~~--------~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 377 FQKD--------PFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred hCCC--------ccccCCCchHHHHhHHHHHHH
Confidence 6421 123457789999999999874
No 34
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.79 E-value=5.8e-19 Score=177.54 Aligned_cols=296 Identities=20% Similarity=0.169 Sum_probs=176.0
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCC--------CCCCceEEeeCCCCccccCCCccceeccchhcc------cCcceeec-
Q 017099 7 IQPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY- 71 (377)
Q Consensus 7 ~~~vvID~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~- 71 (377)
..+|.||+||+++.+++..+..|. ..+||+++... ....+|.+|... +....+++
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~----------~~~~vG~~A~~~~~~~p~~ti~~~Krl 88 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLE----------DGIEVGYEARANAAQDPKNTISSVKRF 88 (616)
T ss_pred CeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcC----------CCEEEcHHHHHhhHhCchhhHHHHHHH
Confidence 357999999999999998655554 23555554422 235677665432 00011111
Q ss_pred ---------------cc--------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEEeCCCCCHHHHH
Q 017099 72 ---------------PI--------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANRE 119 (377)
Q Consensus 72 ---------------p~--------------~~g~i~~~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~ 119 (377)
|+ ..+.+.-.+....+++++.. ..++. .-..+|+++|..++..+|+
T Consensus 89 iG~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~ 166 (616)
T PRK05183 89 MGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQ 166 (616)
T ss_pred hCCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHH
Confidence 11 11222222333445544431 22332 2357999999999999999
Q ss_pred HHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cCCceEEEcccHHHHHHHH
Q 017099 120 KMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDAL 191 (377)
Q Consensus 120 ~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--~g~~-l~~~~~~~~~GG~~l~~~l 191 (377)
.+.+.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+. .|.. +..+.....+||.++++.|
T Consensus 167 a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l 245 (616)
T PRK05183 167 ATKDAA-RLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLL 245 (616)
T ss_pred HHHHHH-HHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHH
Confidence 987776 89999999999999999988764 4579999999999998774 3322 1222334689999999999
Q ss_pred HHHHHhc-CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCCCceEeeCCcccc-ccccCC
Q 017099 192 MKILTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFR-CPEVLF 264 (377)
Q Consensus 192 ~~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd~~~i~i~~~~~~-~~e~lf 264 (377)
.+++.++ +........ ...++..|+.++. .....+.+++-. -.++.+.|. ..+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~----------------~~~~~i~i~~~~-~~itr~efe~l~~~l~ 308 (616)
T PRK05183 246 ADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSD----------------ADSVEVSVALWQ-GEITREQFNALIAPLV 308 (616)
T ss_pred HHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCC----------------CceEEEEEecCC-CeEcHHHHHHHHHHHH
Confidence 9988654 222211100 1223444444331 111222222210 012222221 112222
Q ss_pred CCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchh
Q 017099 265 QPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIG 344 (377)
Q Consensus 265 ~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~G 344 (377)
.. +.+.|.+++.+.. +...-++.|+||||+|++|.+++.|.+.+... +..+.+|+.++-.|
T Consensus 309 ~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~--------~~~~~npdeaVA~G 369 (616)
T PRK05183 309 KR---------TLLACRRALRDAG--VEADEVKEVVMVGGSTRVPLVREAVGEFFGRT--------PLTSIDPDKVVAIG 369 (616)
T ss_pred HH---------HHHHHHHHHHHcC--CCcccCCEEEEECCcccChHHHHHHHHHhccC--------cCcCCCchHHHHHH
Confidence 21 3444445554432 22334578999999999999999988766421 22345788999999
Q ss_pred hHHhhcc
Q 017099 345 GSILASL 351 (377)
Q Consensus 345 asi~a~l 351 (377)
|+++|..
T Consensus 370 AAi~a~~ 376 (616)
T PRK05183 370 AAIQADI 376 (616)
T ss_pred HHHHHHH
Confidence 9999874
No 35
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.79 E-value=6.4e-19 Score=178.09 Aligned_cols=297 Identities=18% Similarity=0.198 Sum_probs=176.7
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceEEeeCCCCccccCCCccceeccchhcc------cCcceeeccc
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPI 73 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~ 73 (377)
.+|.||+||+++++++..+..|. ..+||+++...+ ...++|..|... .....+++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~KRli 73 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKD---------GELLVGQLARRQLVLNPQNTFYNLKRFI 73 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCC---------CCEEECHHHHHhhHhCccceehHHhhhh
Confidence 57999999999999998655554 345666655322 235677665432 1111222222
Q ss_pred cC---------------------C----------ccCCH-HHHHHHHHHhc---ccccccCCCCCcEEEEeCCCCCHHHH
Q 017099 74 EH---------------------G----------IVSNW-DDMEKIWHHTF---YNELRVAPEEHPILLTEAPLNPKANR 118 (377)
Q Consensus 74 ~~---------------------g----------~i~~~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~ 118 (377)
.. | ..... +....+++++. ...++. .-..+||++|..++..+|
T Consensus 74 G~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR 151 (668)
T PRK13410 74 GRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGE--PVTGAVITVPAYFNDSQR 151 (668)
T ss_pred CCCchhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHH
Confidence 11 1 11111 22233444332 123332 224699999999999999
Q ss_pred HHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cCCceEEEcccHHHHHHH
Q 017099 119 EKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--~g~~-l~~~~~~~~~GG~~l~~~ 190 (377)
+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~ 230 (668)
T PRK13410 152 QATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230 (668)
T ss_pred HHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence 9888777 88999999999999999999874 4689999999999998764 3322 222233458999999999
Q ss_pred HHHHHHhc-----CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcC----C--C-ceE--e
Q 017099 191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP----D--G-QVI--T 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p----d--~-~~i--~ 251 (377)
|.+++.++ +.++..... ...++.+|..++.. ....+.+| + + ..+ .
T Consensus 231 l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~----------------~~~~i~i~~~~~~~~g~~~~~~~ 294 (668)
T PRK13410 231 IVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGV----------------SVTDISLPFITATEDGPKHIETR 294 (668)
T ss_pred HHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEEEeeeecCCCCCeeEEEE
Confidence 98877543 222211100 12344455544321 11122221 1 1 122 2
Q ss_pred eCCcccc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEE
Q 017099 252 IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~ 330 (377)
+....|. ..+.++.. +.+.|.+++.... +.+.-++.|+||||+|++|.+++.+++.+.. .
T Consensus 295 itR~~FE~l~~~l~~r---------~~~~i~~~L~~ag--~~~~dId~VvLVGGssRiP~V~~~l~~~fg~--------~ 355 (668)
T PRK13410 295 LDRKQFESLCGDLLDR---------LLRPVKRALKDAG--LSPEDIDEVVLVGGSTRMPMVQQLVRTLIPR--------E 355 (668)
T ss_pred ECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCcEEEEECCccccHHHHHHHHHHcCC--------C
Confidence 3333221 22222222 4444455554332 2334567899999999999988888765532 1
Q ss_pred EECCCCCccccchhhHHhhcc
Q 017099 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++-.||+++|..
T Consensus 356 ~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 356 PNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred cccCCCCchHHHHhHHHHHHh
Confidence 223456789999999999875
No 36
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.79 E-value=5.8e-19 Score=178.70 Aligned_cols=302 Identities=17% Similarity=0.210 Sum_probs=177.3
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceEEeeCCCCccccCCCccceeccchhcc------cCcceeeccc
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPI 73 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~ 73 (377)
.+|.||+||+++++++..+..|. ..+||+++... ....+||..|... +..+.+++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli 73 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGK---------SGDRLVGQLAKRQAVTNAENTVYSIKRFI 73 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeC---------CCCEEEcHHHHHhhhhCcccchHHHHHHh
Confidence 58999999999999997665554 23566665432 1235677665432 1111222222
Q ss_pred cC---------------------C--------ccCCH-HHHHHHHHHhc---ccccccCCCCCcEEEEeCCCCCHHHHHH
Q 017099 74 EH---------------------G--------IVSNW-DDMEKIWHHTF---YNELRVAPEEHPILLTEAPLNPKANREK 120 (377)
Q Consensus 74 ~~---------------------g--------~i~~~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~ 120 (377)
.. | ..... +....+++++. ...++. .-..+||++|..++..+|+.
T Consensus 74 G~~~~d~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a 151 (653)
T PRK13411 74 GRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGE--PVTQAVITVPAYFTDAQRQA 151 (653)
T ss_pred CCCccchhHHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCcHHHHH
Confidence 11 1 11122 22233343332 123332 23579999999999999999
Q ss_pred HHhhhcccCCCCeEEeechhhhhhhhcCC------ceEEEEeCCCCceEEEEee--CCee-cCCceEEEcccHHHHHHHH
Q 017099 121 MTQIMFETFNAPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDAL 191 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~pv~--~g~~-l~~~~~~~~~GG~~l~~~l 191 (377)
+.+.+ +..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|
T Consensus 152 ~~~Aa-~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 152 TKDAG-TIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHHHH-HHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 88877 88999999999999999998874 3579999999999998663 2322 2222234589999999999
Q ss_pred HHHHHhc-----CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCC---CceE--eeCCcc
Q 017099 192 MKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD---GQVI--TIGAER 256 (377)
Q Consensus 192 ~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd---~~~i--~i~~~~ 256 (377)
.+++.++ +.++..... ...+++.|+.++.-. .......+...| +..+ .++.+.
T Consensus 231 ~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~------------~~~i~i~~~~~d~~~~~~~~~~itR~~ 298 (653)
T PRK13411 231 VDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSML------------TTSINLPFITADETGPKHLEMELTRAK 298 (653)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC------------ceEEEEeeeccCCCCCeeEEEEEcHHH
Confidence 8887543 222211100 123444444443210 000011111111 1222 333333
Q ss_pred cc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCC
Q 017099 257 FR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP 335 (377)
Q Consensus 257 ~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~ 335 (377)
|. ..+.++.. +.+.|.+++.+.. +...-++.|+||||+|++|.+++.|++.+... .+....
T Consensus 299 fe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~~~f~~~-------~~~~~~ 360 (653)
T PRK13411 299 FEELTKDLVEA---------TIEPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQKFFGGK-------QPDRSV 360 (653)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHHHHcCCc-------CcCCCC
Confidence 32 22222222 4445555555442 33445688999999999999999998776321 122345
Q ss_pred CCccccchhhHHhhcc
Q 017099 336 ERKYSVWIGGSILASL 351 (377)
Q Consensus 336 ~~~~~~w~Gasi~a~l 351 (377)
+|+.++-.||+++|..
T Consensus 361 npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 361 NPDEAVALGAAIQAGV 376 (653)
T ss_pred CchHHHHHHHHHHHHh
Confidence 7789999999999864
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.78 E-value=3.8e-18 Score=172.94 Aligned_cols=214 Identities=15% Similarity=0.203 Sum_probs=139.9
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--CCee-
Q 017099 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA- 172 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~pv~--~g~~- 172 (377)
..+||++|.+++..+|+.+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|..
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 57999999999999999988877 88999999999999999998863 4689999999999998764 4432
Q ss_pred cCCceEEEcccHHHHHHHHHHHHHhcC------CCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccce
Q 017099 173 LPHAILRLDLAGRDLTDALMKILTERG------YSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKS 241 (377)
Q Consensus 173 l~~~~~~~~~GG~~l~~~l~~~l~~~~------~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
+..+.....+||.+++..|.+++.++. .++..... ...++.+|+.++.. ....
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~~ 283 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQAT 283 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceEE
Confidence 112222458999999999998875421 11111000 12344455444321 1122
Q ss_pred EEc---CCCceEe--eCCcccc-ccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHH
Q 017099 242 YEL---PDGQVIT--IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM 315 (377)
Q Consensus 242 ~~~---pd~~~i~--i~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl 315 (377)
+.+ -++..+. ++.+.|. ..+.+|.. +.+.|.++|.....+ ..-++.|+|+||+|++|.+++.|
T Consensus 284 i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~i 352 (653)
T PTZ00009 284 IEIDSLFEGIDYNVTISRARFEELCGDYFRN---------TLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSLI 352 (653)
T ss_pred EEEEeccCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHHH
Confidence 222 2333333 3333332 22233322 445566666655432 23457899999999999999998
Q ss_pred HHHHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 316 SKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 316 ~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.+... .+....+|+.++-.||+++|..
T Consensus 353 ~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 353 KDFFNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 8766321 1223457789999999999764
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.69 E-value=3e-16 Score=151.57 Aligned_cols=180 Identities=18% Similarity=0.205 Sum_probs=112.2
Q ss_pred cEEEeCCCCceEEeeeCCCCC--------CCCCCceEEeeCCCCc-------------------------------cccC
Q 017099 9 PLVCDNGTGMVKAGFAGDDAP--------RAVFPSIVGRPRHTGV-------------------------------MVGM 49 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~~P--------~~~~ps~~~~~~~~~~-------------------------------~~~~ 49 (377)
.+.||+||+++-+++..+..| ...+||.++....... ....
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 489999999999999965433 3466777755321000 0011
Q ss_pred CCccceeccchhccc----C----cceeeccc-----cCCccCCHHH-HHHHHHHhc---ccccccCCCCCcEEEEeCCC
Q 017099 50 GQKDAYVGDEAQSKR----G----ILTLKYPI-----EHGIVSNWDD-MEKIWHHTF---YNELRVAPEEHPILLTEAPL 112 (377)
Q Consensus 50 ~~~~~~vg~~~~~~~----~----~~~~~~p~-----~~g~i~~~~~-~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~ 112 (377)
......+|.+|.+.. + ...+++-+ ..+.+...+. +..+|.++- ...++ ..-..+||+.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g--~~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQ--AAITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhC--CCCCcEEEEECCc
Confidence 234567888876541 1 11234333 2222222332 234444442 11222 1235799999998
Q ss_pred CC-----HHHHHH--HHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCC----------
Q 017099 113 NP-----KANREK--MTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEG---------- 170 (377)
Q Consensus 113 ~~-----~~~~~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~~g---------- 170 (377)
+. ..+|+. .+.-+.+..|++.+.++++|+||+++++. .+.+|+|+|+++++++.|.-+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS 239 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence 76 555543 24444488999999999999999999873 578999999999999877422
Q ss_pred -eecCCceEEEcccHHHHHHHHH
Q 017099 171 -YALPHAILRLDLAGRDLTDALM 192 (377)
Q Consensus 171 -~~l~~~~~~~~~GG~~l~~~l~ 192 (377)
.++.++ -..+||+++|+.|.
T Consensus 240 ~~vla~~--G~~lGG~DfD~~L~ 260 (450)
T PRK11678 240 ASLLGHS--GQRIGGNDLDIALA 260 (450)
T ss_pred eeEEecC--CCCCChHHHHHHHH
Confidence 122222 13799999999996
No 39
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.67 E-value=2.9e-16 Score=159.42 Aligned_cols=215 Identities=20% Similarity=0.268 Sum_probs=134.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC------ceEEEEeCCCCceEEEEee--CCee-c
Q 017099 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~pv~--~g~~-l 173 (377)
..+++++|..++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46999999999999999988888 88999999999999999987763 4789999999999988764 4432 2
Q ss_pred CCceEEEcccHHHHHHHHHHHHHhc-----CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEE
Q 017099 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
........+||.++++.|.+++.++ +.+...... ...++.+|+.++.. ......+.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~--------------~~~~~~~~ 280 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSN--------------DNTEITIS 280 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTS--------------SSSEEEEE
T ss_pred cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccc--------------cccccccc
Confidence 2233456899999999999988642 222211100 12244444443321 01111221
Q ss_pred ----cCCCceEeeCCccccc---cccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHH
Q 017099 244 ----LPDGQVITIGAERFRC---PEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 244 ----~pd~~~i~i~~~~~~~---~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~ 316 (377)
.+++..+.+.-.|-.+ .+.++.. +.+.|.+++..... ...-++.|+|+||+|++|-+.+.|+
T Consensus 281 ~~~~~~~~~~~~~~itr~~fe~l~~~~~~~---------~~~~i~~~l~~~~~--~~~~i~~V~lvGG~sr~p~v~~~l~ 349 (602)
T PF00012_consen 281 IESLYDDGEDFSITITREEFEELCEPLLER---------IIEPIEKALKDAGL--KKEDIDSVLLVGGSSRIPYVQEALK 349 (602)
T ss_dssp EEEEETTTEEEEEEEEHHHHHHHTHHHHHH---------THHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHH
T ss_pred cccccccccccccccccceecccccccccc---------cccccccccccccc--cccccceeEEecCcccchhhhhhhh
Confidence 2224444433333222 2222222 55566666665432 2444578999999999998887777
Q ss_pred HHHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 317 KEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.+. . .+....+|..++..||+++|..
T Consensus 350 ~~f~----~----~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 350 ELFG----K----KISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp HHTT----S----EEB-SS-TTTHHHHHHHHHHHH
T ss_pred hccc----c----ccccccccccccccccccchhh
Confidence 6553 1 3344567889999999999864
No 40
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.9e-15 Score=150.27 Aligned_cols=311 Identities=17% Similarity=0.166 Sum_probs=178.6
Q ss_pred CCCcEEEeCCCCceEEeeeCCC-CCCCCCCceEEeeCCCCccccCCCccceeccchhcc------cCcceeeccccCCc-
Q 017099 6 DIQPLVCDNGTGMVKAGFAGDD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPIEHGI- 77 (377)
Q Consensus 6 ~~~~vvID~Gs~~~k~G~~~~~-~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~~~g~- 77 (377)
...+|.||+||+++.+++.... .|. ++++..+....+...........++|..|.+. ...+.+++.+..+.
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~ 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence 4568999999999999998766 454 33333333222222111122257888877653 22345566665331
Q ss_pred -----------cCCH-HHHHHHHHHhc---ccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhh
Q 017099 78 -----------VSNW-DDMEKIWHHTF---YNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVL 142 (377)
Q Consensus 78 -----------i~~~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
.... +....++.++- ...|+ ..-..+++++|.+++..+|..+.+.+ ...|++.+.++++|.|
T Consensus 83 ~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtA 159 (579)
T COG0443 83 GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTA 159 (579)
T ss_pred CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHH
Confidence 1112 22233333321 12222 23367999999999999998877776 8899999999999999
Q ss_pred hhhhcCC-----ceEEEEeCCCCceEEEEeeC--Ce-ecCCceEEEcccHHHHHHHHHHHHHhcC-----CCccChhH--
Q 017099 143 SLYASGR-----TTGIVLDSGDGVSHTVPIYE--GY-ALPHAILRLDLAGRDLTDALMKILTERG-----YSFTTTAE-- 207 (377)
Q Consensus 143 a~~~~g~-----~~~lVVDiG~~~t~v~pv~~--g~-~l~~~~~~~~~GG~~l~~~l~~~l~~~~-----~~~~~~~~-- 207 (377)
|++++|. .+-+|+|+|+++++++.|.= |. .+........+||++++..|...+..+- .++.....
T Consensus 160 AAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~ 239 (579)
T COG0443 160 AALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAAL 239 (579)
T ss_pred HHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHH
Confidence 9999985 47899999999999997754 32 2233445679999999999998775431 22222111
Q ss_pred ---HHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCCCceEee--CCccccccccCCCCCCCCCCCCChhHHHHH
Q 017099 208 ---REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITI--GAERFRCPEVLFQPSMIGMESAGIHETTYN 282 (377)
Q Consensus 208 ---~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd~~~i~i--~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~ 282 (377)
...++..|..++... .....+..-++. +.+ .-.|..+ |-+..+. ...+.+.+.+
T Consensus 240 ~rL~~~ae~aK~~LS~~~--------------~~~i~~~~~~~~-~~~~~~ltR~~~-E~l~~dl-----l~r~~~~~~~ 298 (579)
T COG0443 240 QRLREAAEKAKIELSSAT--------------QTSINLPSIGGD-IDLLKELTRAKF-EELILDL-----LERTIEPVEQ 298 (579)
T ss_pred HHHHHHHHHHHHHccccc--------------ccccchhhcccc-chhhhhhhHHHH-HHHHHHH-----HHHHHHHHHH
Confidence 123444444443221 111111111111 111 1112111 1111110 0001122222
Q ss_pred HHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 283 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 283 ~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+++. ..+...-++-|+++||.|+||=+.+.+.+.+. . ......+|+.++-.||++.|..
T Consensus 299 al~~--a~l~~~~I~~VilvGGstriP~V~~~v~~~f~----~----~~~~~inpdeava~GAa~qa~~ 357 (579)
T COG0443 299 ALKD--AGLEKSDIDLVILVGGSTRIPAVQELVKEFFG----K----EPEKSINPDEAVALGAAIQAAV 357 (579)
T ss_pred HHHH--cCCChhhCceEEEccceeccHHHHHHHHHHhC----c----cccccCCccHHHHHHHHHHHHh
Confidence 2222 22333555779999999999966666665554 1 2334457889999999998875
No 41
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.7e-13 Score=119.65 Aligned_cols=220 Identities=18% Similarity=0.219 Sum_probs=128.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC------ceEEEEeCCCCceEEE--EeeCCee-c
Q 017099 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTV--PIYEGYA-L 173 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~--pv~~g~~-l 173 (377)
...|+++|.+++..+|+..- -+--..|.+.+.++++|.+|++++|. .+-+|.|+|+++-+|+ -|-+|.- +
T Consensus 173 ~~AVvTvPAYFNDAQrQATK-DAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATK-DAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhc-ccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 45789999999999998744 44467889999999999999999985 5889999999997766 5666743 2
Q ss_pred CCceEEEcccHHHHHHHHHHHHHh-----cCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEc---C
Q 017099 174 PHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYEL---P 245 (377)
Q Consensus 174 ~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---p 245 (377)
........+||.++++...+++-+ .|.++. .+...+..+++..- .....+ ++......++ -
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~--kdnkA~~KLrRe~E-------kAKRaL--Ssqhq~riEIeS~f 320 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVR--KDNKAVQKLRREVE-------KAKRAL--SSQHQVRIEIESLF 320 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCccc--hhhHHHHHHHHHHH-------HHHhhh--ccccceEEeeeecc
Confidence 333446789999999988776632 233332 23444444444311 000111 1111111111 2
Q ss_pred CCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcC--CHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhC
Q 017099 246 DGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA 323 (377)
Q Consensus 246 d~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~--~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~ 323 (377)
||..++-.-.|..+.|+ ...|...-.+-+++. +.++++.-+.-|||+||+++||- +++-|.+.+
T Consensus 321 dG~DfSEtLtRAkFEEl----------NmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPK----vQqllk~fF 386 (663)
T KOG0100|consen 321 DGVDFSETLTRAKFEEL----------NMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPK----VQQLLKDFF 386 (663)
T ss_pred ccccccchhhhhHHHHh----------hhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChh----HHHHHHHHh
Confidence 22222211122222221 011222222222332 55677777889999999999994 455555544
Q ss_pred CCCceEEEECCCCCccccchhhHHhhcc
Q 017099 324 PSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.-.. ...--+|+-++..||++-|-.
T Consensus 387 ~GKe---pskGinPdEAVAYGAAVQaGv 411 (663)
T KOG0100|consen 387 NGKE---PSKGINPDEAVAYGAAVQAGV 411 (663)
T ss_pred CCCC---ccCCCChHHHHHhhhhhhhcc
Confidence 2110 111235677888888876653
No 42
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.48 E-value=3.1e-13 Score=130.58 Aligned_cols=202 Identities=18% Similarity=0.201 Sum_probs=134.6
Q ss_pred CHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHH
Q 017099 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~ 188 (377)
+....+.+.+ +++..|+....++.+|+|+++++.. ...+|||+|+++|+++.+.+|.++ ....+++||++++
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence 4455566666 4589999999999999999998753 358999999999999999999888 7788999999999
Q ss_pred HHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCC--C-ceEeeCCccccccccCCC
Q 017099 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD--G-QVITIGAERFRCPEVLFQ 265 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd--~-~~i~i~~~~~~~~e~lf~ 265 (377)
+.+...|. ...+.+|++|.+++....+.. .....+.+++ + ....++ +..+.+++..
T Consensus 241 ~dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~----------~~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFG---------TPPSDAEAIKVRHGCALGSIV----------GKDESVEVPSVGGRPPRSLQ--RQTLAEVIEP 299 (420)
T ss_pred HHHHHHhC---------cCHHHHHHHHHhcceeccccC----------CCCceeEecCCCCCCCeEEc--HHHHHHHHHH
Confidence 99987662 134679999998876432210 0011222221 1 111111 1111122111
Q ss_pred CCCCCCCCCChhHHHHHHHhcCCHHHHH-----hhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECC------
Q 017099 266 PSMIGMESAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP------ 334 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~r~-----~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~------ 334 (377)
. ...|.+.|.+++..++..++. .+...|+||||+|+|||+.+.+++.+.. ++++..|
T Consensus 300 r------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~ 367 (420)
T PRK09472 300 R------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGL 367 (420)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCC
Confidence 0 011344555666555544443 3556799999999999999999988842 3444332
Q ss_pred ----CCCccccchhhHHhhcc
Q 017099 335 ----PERKYSVWIGGSILASL 351 (377)
Q Consensus 335 ----~~~~~~~w~Gasi~a~l 351 (377)
.+|.|++-.|...|+.-
T Consensus 368 ~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 368 TDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred hhhcCCcHHHHHHHHHHHhhh
Confidence 36889999999888763
No 43
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.45 E-value=7e-13 Score=126.45 Aligned_cols=174 Identities=16% Similarity=0.207 Sum_probs=115.6
Q ss_pred CHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHH
Q 017099 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~ 188 (377)
++...+.+.+++ +.+|+..+.+..+|+|+++++.. ...+|||+|+++|+++.+.+|.+. ....+++||++++
T Consensus 156 ~~~~v~~~~~~~-~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~--~~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVKCV-ERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR--YTKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHHHH-HHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE--EEeeecchHHHHH
Confidence 566667777666 88999999999999999987643 357999999999999999999877 4678899999999
Q ss_pred HHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCC---CceEeeCCcccc-ccccCC
Q 017099 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD---GQVITIGAERFR-CPEVLF 264 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd---~~~i~i~~~~~~-~~e~lf 264 (377)
+.+.+.+. .....+|++|.+++....+. ......+.++. +....++...+. +.+..+
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPL----------EGPDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccC----------CCCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 99887652 13567999999998753221 00011222211 112222221111 111111
Q ss_pred CCCCCCCCCCChhHHHH-HHHhcCCHHHHHhhhcC-eEEecCCCCCCChHHHHHHHHhh
Q 017099 265 QPSMIGMESAGIHETTY-NSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 265 ~p~~~~~~~~~l~~~I~-~~i~~~~~~~r~~l~~n-Ivl~GG~s~i~g~~~rl~~el~~ 321 (377)
. .+.+.|. +.+.+...+ . -+.+ |+||||+|++||+.+.+.+.+..
T Consensus 294 ~---------ei~~~i~~~~L~~~~~~--~-~i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 294 E---------EILEIVKQKELRKSGFK--E-ELNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred H---------HHHHHHHHHHHHhcCCc--c-cCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 1 1444554 555544322 2 2345 99999999999999999998843
No 44
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.4e-12 Score=124.29 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=133.4
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--CCe-e
Q 017099 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGY-A 172 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~pv~--~g~-~ 172 (377)
..++++.|..++..+|+..-+.. ..+|++.+.++++|.||++++|. .+-+|.|+|+++.+|+++. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 45899999999999999877777 77999999999999999999873 4669999999998888663 342 2
Q ss_pred cCCceEEEcccHHHHHHHHHHHHHhc-----CCCccChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCCCccceE
Q 017099 173 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 242 (377)
Q Consensus 173 l~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
+.......++||.++++.|.+++... +.+...... ...+|+.|+.+... ...+.
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~----------------~~~~i 286 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSS----------------TQASI 286 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccc----------------cccee
Confidence 23344467999999999998877421 111111000 11122233322111 11111
Q ss_pred ---EcCCCceEeeCCccccc---cccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHH
Q 017099 243 ---ELPDGQVITIGAERFRC---PEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 243 ---~~pd~~~i~i~~~~~~~---~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~ 316 (377)
.+-+|..+...-.|.++ ..-||.. ..+.+..+|...- +-+..++.||||||.+++|.++.-++
T Consensus 287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~ 355 (620)
T KOG0101|consen 287 EIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLE 355 (620)
T ss_pred ccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHH
Confidence 12234444333333332 2334433 3344445554432 23445678999999999997766665
Q ss_pred HHHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 317 KEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.-+.. -++..+-+|+.++..||++.|.+
T Consensus 356 d~f~~-------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 356 DFFNG-------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred HHhcc-------cccccCCCHHHHHHhhHHHHhhh
Confidence 44422 12234457899999999999876
No 45
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.34 E-value=6e-12 Score=119.03 Aligned_cols=201 Identities=19% Similarity=0.259 Sum_probs=136.3
Q ss_pred CHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcC-----CceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHH
Q 017099 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~ 188 (377)
+....++|.+++ |+.+..-..++-+|+|++.+.= .-++++||+|+++|+|+.+.+|.+. +...+|+||++++
T Consensus 163 ~~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT 239 (418)
T COG0849 163 PKNILENLEKCV-ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVT 239 (418)
T ss_pred chHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHH
Confidence 566667777766 8899999999999999987663 2579999999999999999999999 7788999999999
Q ss_pred HHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCC--CceEeeCCccccccccCCCC
Q 017099 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD--GQVITIGAERFRCPEVLFQP 266 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd--~~~i~i~~~~~~~~e~lf~p 266 (377)
..+...|. .+.+.+|++|.+++....+.. .....+.+|. +.. ...-.+....++.=
T Consensus 240 ~DIa~~l~---------t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~-~~~~t~~~ls~II~-- 297 (418)
T COG0849 240 KDIAKGLK---------TPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDI-PRQVTRSELSEIIE-- 297 (418)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcc-cchhhHHHHHHHHH--
Confidence 99998882 245779999999986543321 1122222221 111 00001111111110
Q ss_pred CCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECC----------CC
Q 017099 267 SMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP----------PE 336 (377)
Q Consensus 267 ~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~----------~~ 336 (377)
.....+.+++...|++.-.. ..+...|+||||++++||+.+-.+.-+.. ++|+..| .+
T Consensus 298 ----aR~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~ 365 (418)
T COG0849 298 ----ARVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARN 365 (418)
T ss_pred ----hhHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccC
Confidence 00111334555566554322 56778899999999999999887766643 3444333 35
Q ss_pred CccccchhhHHhhcc
Q 017099 337 RKYSVWIGGSILASL 351 (377)
Q Consensus 337 ~~~~~w~Gasi~a~l 351 (377)
|.|++-.|.-.++..
T Consensus 366 p~fs~avGl~~~~~~ 380 (418)
T COG0849 366 PAFSTAVGLLLYGAL 380 (418)
T ss_pred chhhhhHHHHHHHhh
Confidence 899999999888875
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.30 E-value=2.7e-10 Score=107.84 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=106.5
Q ss_pred CHHHHHHHHhhhcccCCCCeEEeechhhhhhhhc----------C-Cc-eEEEEeCCCCceEEEEeeCCeecCCceEEEc
Q 017099 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYAS----------G-RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~ 181 (377)
++...+.+.+++ +..|+.-..+..+++|..-+. . .. +.++||+|+++|+++.+.+|.++ ....++
T Consensus 141 ~~~~v~~~~~~~-~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHAL-KLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP 217 (348)
T ss_pred cHHHHHHHHHHH-HHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence 777788888776 889999888888888764322 1 22 48999999999999999999998 778999
Q ss_pred ccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCCCceEeeCCccccccc
Q 017099 182 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPE 261 (377)
Q Consensus 182 ~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd~~~i~i~~~~~~~~e 261 (377)
+||.++++.+.+.+ +. +.+.++++|.+.++.... ..+ ..+
T Consensus 218 ~G~~~i~~~i~~~~---~~------~~~~Ae~~k~~~~~~~~~-~~~------------------------------~~~ 257 (348)
T TIGR01175 218 FGTRQLTSELSRAY---GL------NPEEAGEAKQQGGLPLLY-DPE------------------------------VLR 257 (348)
T ss_pred chHHHHHHHHHHHc---CC------CHHHHHHHHhcCCCCCch-hHH------------------------------HHH
Confidence 99999999987665 11 345688888765532110 000 000
Q ss_pred cCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHh
Q 017099 262 VLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIS 320 (377)
Q Consensus 262 ~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~ 320 (377)
..++ .+..-|.+++.-.-........+.|+||||+++++||.+.|++++.
T Consensus 258 ~~~~---------~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 258 RFKG---------ELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHH---------HHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 0000 1334445555332111122346789999999999999999999995
No 47
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.25 E-value=3.4e-10 Score=106.39 Aligned_cols=184 Identities=13% Similarity=0.142 Sum_probs=107.1
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCC-c------------cccCCCcc---ceeccchhcccCcceeec
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-V------------MVGMGQKD---AYVGDEAQSKRGILTLKY 71 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~-~------------~~~~~~~~---~~vg~~~~~~~~~~~~~~ 71 (377)
.++.||+|-.+||+-.... ...+|+.++...... . .+..++.. +++|+++...... ...
T Consensus 3 ~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~--~~~ 77 (344)
T PRK13917 3 YVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNT--GKD 77 (344)
T ss_pred eEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccc--cCC
Confidence 4899999999999866422 235576654332111 1 11122333 6777765322110 000
Q ss_pred ccc-CCccCCHHHHHHHHHHhcccccccC--CCCCcEEE--EeCCCCCHHH-HHHHHhhhccc-----------CCCCeE
Q 017099 72 PIE-HGIVSNWDDMEKIWHHTFYNELRVA--PEEHPILL--TEAPLNPKAN-REKMTQIMFET-----------FNAPAM 134 (377)
Q Consensus 72 p~~-~g~i~~~~~~~~~~~~~~~~~L~~~--~~~~~vvl--~~p~~~~~~~-~~~l~~~lfe~-----------~~~~~v 134 (377)
+.. ++.. .-+.++.++..++...+... .+...++| -.|...-... ++.+.+.+-.. ..+..|
T Consensus 78 ~~~~~~~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V 156 (344)
T PRK13917 78 TYSTNDRY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV 156 (344)
T ss_pred cccccccc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence 110 1111 12345666555542222211 11223333 3554432222 24555444221 346789
Q ss_pred EeechhhhhhhhcCC-------------ceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHh
Q 017099 135 YVAIQAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 135 ~~~~~~~~a~~~~g~-------------~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~ 197 (377)
.++|+|++|++.... ...+|||+|+.+|+++.+.++.+.......++.|..++.+.+.+.+..
T Consensus 157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~ 232 (344)
T PRK13917 157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISK 232 (344)
T ss_pred EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHh
Confidence 999999999865422 356999999999999999999998877778999999999999999853
No 48
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.2e-10 Score=113.46 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=77.4
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC----------ceEEEEeCCCCceEEEEeeCCee
Q 017099 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIYEGYA 172 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~v~pv~~g~~ 172 (377)
..+++++|+++.+.+|+.+++.+ +.+|...++++++..++++.+|. +.-++.|+|+++|+++.|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 56999999999999999999999 88999999999999999999884 46799999999999998843222
Q ss_pred cCCc-------------eEEEcccHHHHHHHHHHHHHh
Q 017099 173 LPHA-------------ILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 173 l~~~-------------~~~~~~GG~~l~~~l~~~l~~ 197 (377)
-... .-...+||..++..|+.+|..
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 1111 112378999999999999865
No 49
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.17 E-value=9.8e-10 Score=103.55 Aligned_cols=186 Identities=20% Similarity=0.300 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHhcccccccCCCC-----------------CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhh
Q 017099 80 NWDDMEKIWHHTFYNELRVAPEE-----------------HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVL 142 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~L~~~~~~-----------------~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
+.+.++..+++=..+++..+.++ ..|+++.- ++...+.+++++ +.+|.+-..+=-++.|
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~~~-~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVELF-EEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHHHH-HHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHHHH-HHcCCceEEEeehHHH
Confidence 44667777777665666654322 33444432 677777777666 8888876555444443
Q ss_pred --hhhhc---------CCceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHH
Q 017099 143 --SLYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIV 211 (377)
Q Consensus 143 --a~~~~---------g~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~ 211 (377)
-+|.. ...+-++||+|+..|.++.+.+|.++ ..+.+++||+++++.+.+.+ ..+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~---------~i~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIAREL---------GIDFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHT---------T--HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhc---------CCCHHHH
Confidence 33332 12356999999999999999999999 77889999999999998775 2244567
Q ss_pred HHHhHhcceeecCHHHHHHHhccCCCccceEEcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHH
Q 017099 212 RDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDI 291 (377)
Q Consensus 212 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~ 291 (377)
+++|.+... ..+...+ +.+.+++. |..-|.+++.-.-...
T Consensus 231 e~~k~~~~l-~~~~~~~------------------------------~l~~~~~~---------l~~EI~rsl~~y~~~~ 270 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQD------------------------------ALRPFLEE---------LAREIRRSLDFYQSQS 270 (340)
T ss_dssp HHHHHHT-------HHH------------------------------HHHHHHHH---------HHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCC-CcchHHH------------------------------HHHHHHHH---------HHHHHHHHHHHHHhcC
Confidence 777765432 1111000 00011111 4455555555433333
Q ss_pred HHhhhcCeEEecCCCCCCChHHHHHHHHh
Q 017099 292 RKDLYGNIVLSGGSTMFPGIADRMSKEIS 320 (377)
Q Consensus 292 r~~l~~nIvl~GG~s~i~g~~~rl~~el~ 320 (377)
...-++.|+||||+|+++|+.+.|.++|.
T Consensus 271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 271 GGESIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp -----SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred CCCCCCEEEEECCccchhhHHHHHHHHHC
Confidence 34456889999999999999999999993
No 50
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.17 E-value=9.5e-10 Score=102.68 Aligned_cols=183 Identities=12% Similarity=0.061 Sum_probs=114.3
Q ss_pred EeCCCCceEEeeeC-CCCC-CCCCCceEEeeCCCC------------ccccCCCccceeccchhcccCcceeeccccCCc
Q 017099 12 CDNGTGMVKAGFAG-DDAP-RAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77 (377)
Q Consensus 12 ID~Gs~~~k~G~~~-~~~P-~~~~ps~~~~~~~~~------------~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~ 77 (377)
||+|-.++|+-+.. +..+ ...+||.++...... ..+..++..++||+.+..... ....+.+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~-~~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAAD-TNRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhccc-Cccceeccccc
Confidence 89999999987653 2232 346787764322111 111134566678876633211 01111222222
Q ss_pred cCCHHHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhccc--------CCCCeEEeechhhhhhhhc--
Q 017099 78 VSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFET--------FNAPAMYVAIQAVLSLYAS-- 147 (377)
Q Consensus 78 i~~~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~-- 147 (377)
..+ +....++.+++.. ... .....+++-.|...-..+++.+.+.+-.. ..+..|.++|+++.|.+..
T Consensus 81 ~~~-~~~~~L~~~Al~~-~~~-~~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 TET-PEYMALLRGALAL-SKV-REIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred cCC-HHHHHHHHHHHHH-hcC-CCCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 222 3445555555422 222 11123555567666566777777766432 4677899999999887653
Q ss_pred -------CCceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhc
Q 017099 148 -------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (377)
Q Consensus 148 -------g~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~ 198 (377)
...+.+|||+|+.+|+++.+.++.+..+...+.+.|...+.+.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 235679999999999999888888887777788999999999999988644
No 51
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.17 E-value=1.7e-11 Score=101.59 Aligned_cols=237 Identities=18% Similarity=0.191 Sum_probs=146.9
Q ss_pred CCCCcEEEeCCCCceEEeeeC-CCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHH-
Q 017099 5 EDIQPLVCDNGTGMVKAGFAG-DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD- 82 (377)
Q Consensus 5 ~~~~~vvID~Gs~~~k~G~~~-~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~- 82 (377)
+..-.|.+|+||..+..=.-. +..|-.. .++.-+-+++|.+.|+-
T Consensus 27 ~sk~~vGVDLGT~~iV~~vlD~d~~Pvag---------------------------------~~~~advVRDGiVvdf~e 73 (277)
T COG4820 27 ESKLWVGVDLGTCDIVSMVLDRDGQPVAG---------------------------------CLDWADVVRDGIVVDFFE 73 (277)
T ss_pred cCceEEEeecccceEEEEEEcCCCCeEEE---------------------------------EehhhhhhccceEEehhh
Confidence 345678999999998864443 3344211 01122334667776653
Q ss_pred ---HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCC
Q 017099 83 ---DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGD 159 (377)
Q Consensus 83 ---~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~ 159 (377)
.++++.+.+ .+.|++... ..--..||-+.....+....+ .|..|....+.+++|.++++-.+..+|-|||+|+
T Consensus 74 aveiVrrlkd~l-Ek~lGi~~t--ha~taiPPGt~~~~~ri~iNV-iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGG 149 (277)
T COG4820 74 AVEIVRRLKDTL-EKQLGIRFT--HAATAIPPGTEQGDPRISINV-IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHH-HHhhCeEee--eccccCCCCccCCCceEEEEe-ecccCceeeeecCCchhHHHHhccCCCcEEEeCC
Confidence 233444444 466776432 112223444433333333333 4899999999999999999999999999999999
Q ss_pred CceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCcc
Q 017099 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVE 239 (377)
Q Consensus 160 ~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 239 (377)
++|-|+.+-+|.++ ....-+.||.+++-.|.-. +++ +.+.+|+.|+..--
T Consensus 150 GTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG~---ygi------~~EeAE~~Kr~~k~------------------- 199 (277)
T COG4820 150 GTTGISIVKKGKVI--YSADEPTGGTHMTLVLAGN---YGI------SLEEAEQYKRGHKK------------------- 199 (277)
T ss_pred CcceeEEEEcCcEE--EeccCCCCceeEEEEEecc---cCc------CHhHHHHhhhcccc-------------------
Confidence 99999999999999 5566788998877655421 222 33456766664210
Q ss_pred ceEEcCCCceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHH
Q 017099 240 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 240 ~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el 319 (377)
++ |-|......++. +.+.+.+-|...++ ..+.|+||.+..||+++-++++|
T Consensus 200 -------~~------Eif~~v~PV~eK---------MAeIv~~hie~~~i-------~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 200 -------GE------EIFPVVKPVYEK---------MAEIVARHIEGQGI-------TDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred -------ch------hcccchhHHHHH---------HHHHHHHHhccCCC-------cceEEecccccCccHHHHHHHHh
Confidence 00 001100111111 44555555555544 46999999999999999999998
Q ss_pred hhhCCCCceEEEECCCCCccccchhh
Q 017099 320 SALAPSSMKIKVVAPPERKYSVWIGG 345 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~Ga 345 (377)
+..++.|..|.|..-+|-
T Consensus 251 --------~l~v~~P~~p~y~TPLgI 268 (277)
T COG4820 251 --------ALQVHLPQHPLYMTPLGI 268 (277)
T ss_pred --------ccccccCCCcceechhhh
Confidence 345555555566555553
No 52
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.4e-08 Score=98.80 Aligned_cols=240 Identities=13% Similarity=0.154 Sum_probs=138.3
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCC------------ceEEEEeCCCCceEEEEe--
Q 017099 102 EHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPI-- 167 (377)
Q Consensus 102 ~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~pv-- 167 (377)
-..++|.+|.++...+|..+++++ ...|++-+.++++..|+++++|. .+-..||+||+.++++.+
T Consensus 137 v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF 215 (727)
T KOG0103|consen 137 VSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAF 215 (727)
T ss_pred CCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeee
Confidence 457999999999999999999999 88999999999999999999983 357899999999887754
Q ss_pred eCCeec-CCceEEEcccHHHHHHHHHHHHHhcC---CCc--cChhH-----HHHHHHHhHhcceeecCHHHHHHHhccCC
Q 017099 168 YEGYAL-PHAILRLDLAGRDLTDALMKILTERG---YSF--TTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSS 236 (377)
Q Consensus 168 ~~g~~l-~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~--~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~ 236 (377)
--|..- ..+...-.+||+++++.|.+++.... +.+ .+... ...++.+|+.+..- .
T Consensus 216 ~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN--------------~ 281 (727)
T KOG0103|consen 216 TKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSAN--------------T 281 (727)
T ss_pred ccCcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcC--------------c
Confidence 334321 22233448999999999999886531 111 11111 22345555544321 0
Q ss_pred CccceEEc-CCCceEeeCCccccccc---cCCCCCCCCCCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChH
Q 017099 237 AVEKSYEL-PDGQVITIGAERFRCPE---VLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA 312 (377)
Q Consensus 237 ~~~~~~~~-pd~~~i~i~~~~~~~~e---~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~ 312 (377)
..+-..+. =+...+.-.-.|..+.| .+++. +..-+.+++.. ..+...-++-|=++||+|+||-++
T Consensus 282 ~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~r---------v~~p~~~~l~d--~~l~~edi~~VEiVGg~sripaik 350 (727)
T KOG0103|consen 282 ELPLNIECFMNDKDVSSKIKREEFEELSAPLLER---------VEVPLLKALAD--AKLKVEDIHAVEIVGGLSRIPAIK 350 (727)
T ss_pred CCCcchhheeecchhhhhccHHHHHHHHHHHHHh---------hhHHHHHHHHH--hcCccccceeEEEecCcccchHHH
Confidence 00000000 00001110011111111 11110 11111222221 112222335689999999999888
Q ss_pred HHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhcc--cccccccccHHHHhhcCCcccccc
Q 017099 313 DRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL--STFQQMWIAKSEYDESGPSIVHRK 375 (377)
Q Consensus 313 ~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l--~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
+.|..-...... . ..+.+.++-+|+++-... +.|.-.|.+.+|-..+-.++-|++
T Consensus 351 e~Is~~Fgke~s----~----TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pysIs~~w~~ 407 (727)
T KOG0103|consen 351 EMISDFFGKELS----R----TLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYSISLRWVK 407 (727)
T ss_pred HHHHHHhCCccc----c----cccHHHHHHHhHHHHHHhcCccccceecceecccceeEEEEecc
Confidence 877754433221 1 123467788888776664 346666666666655555554443
No 53
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=8.4e-08 Score=86.15 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=92.4
Q ss_pred HhhhcccCCCCeEEeechhhhhh--hh-----cC-Cc---eEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHH
Q 017099 122 TQIMFETFNAPAMYVAIQAVLSL--YA-----SG-RT---TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 122 ~~~lfe~~~~~~v~~~~~~~~a~--~~-----~g-~~---~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~ 190 (377)
..-+|+..|.....+=-++.+.. |. .+ .. ..+|+|||++.|.+..+.+|+++ ..+..++||+.++..
T Consensus 154 ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~~ 231 (354)
T COG4972 154 RIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQE 231 (354)
T ss_pred HHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee--eEeeccCcHHHHHHH
Confidence 33455777776554444444332 21 11 12 24699999999999999999999 778999999999999
Q ss_pred HHHHHHhcCCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccCCCccceEEcCCCceEeeCCccccccccCCCCCCCC
Q 017099 191 LMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG 270 (377)
Q Consensus 191 l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pd~~~i~i~~~~~~~~e~lf~p~~~~ 270 (377)
+.+.. ++ +...++++|.....- .++..+.-. .+
T Consensus 232 i~r~~-----~L----~~~~a~~~k~~~~~P-~~y~~~vl~------------------------------~f------- 264 (354)
T COG4972 232 IQRAY-----SL----TEEKAEEIKRGGTLP-TDYGSEVLR------------------------------PF------- 264 (354)
T ss_pred HHHHh-----CC----ChhHhHHHHhCCCCC-CchhHHHHH------------------------------HH-------
Confidence 88765 11 234577777665432 122211100 00
Q ss_pred CCCCChhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHh
Q 017099 271 MESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIS 320 (377)
Q Consensus 271 ~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~ 320 (377)
...|.+-|.++|+-.-.--...-+..|+|+||++.+.|+.+.+.+.|+
T Consensus 265 --~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 265 --LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred --HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 001445555565432110011234679999999999999999999984
No 54
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=9.6e-08 Score=90.65 Aligned_cols=216 Identities=18% Similarity=0.230 Sum_probs=131.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCc-----eEEEEeCCCCceEEE--EeeCCeec-C
Q 017099 103 HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTV--PIYEGYAL-P 174 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~--pv~~g~~l-~ 174 (377)
...++++|.+++..+|+..-... .-++...+..+++|.+|++++|.. .-.|.|+|+++..|+ -+.+|.-. .
T Consensus 161 ~~avvtvpAyfndsqRqaTkdag-~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDAG-QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhhh-hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 46789999999999988755444 889999999999999999999863 568999999987665 56777543 3
Q ss_pred CceEEEcccHHHHHHHHHHHHHhc---CCCccChhHHHHHHHHhHhcceeecCHHHHHHHhccC----CCccceEEcCCC
Q 017099 175 HAILRLDLAGRDLTDALMKILTER---GYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS----SAVEKSYELPDG 247 (377)
Q Consensus 175 ~~~~~~~~GG~~l~~~l~~~l~~~---~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~----~~~~~~~~~pd~ 247 (377)
........||.+++..+.+++-.. +..+.-..+...+.++++.- |..+...+ .....+|..-|.
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaa---------EkaKielSs~~~tei~lp~iTada 310 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAA---------EKAKIELSSRQQTEINLPFITADA 310 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHH---------HhhhhhhhhcccceeccceeeccC
Confidence 344567889999999998877432 11122122333344443321 00000011 112233444343
Q ss_pred ---ceEeeCCccccccccCCCCCCCCCCCCChhHHHHHHHhcCCHHHHH-----hhhcCeEEecCCCCCCChHHHHHHHH
Q 017099 248 ---QVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 248 ---~~i~i~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~r~-----~l~~nIvl~GG~s~i~g~~~rl~~el 319 (377)
+-+.+...|-.+.|+ +..+|.+.|.-|-.++|. .-++-|+|+||.+++|-..+.+++-+
T Consensus 311 ~gpkh~~i~~tr~efe~~-------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f 377 (640)
T KOG0102|consen 311 SGPKHLNIELTRGEFEEL-------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF 377 (640)
T ss_pred CCCeeEEEeecHHHHHHh-------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh
Confidence 444555455444333 455666666655444443 44567999999999996666555333
Q ss_pred hhhCCCCceEEEECCCCCccccchhhHHhh
Q 017099 320 SALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
. .-|. ...+|+-++-.||++-+
T Consensus 378 g-k~p~-------~~vnPdeava~GAaiqg 399 (640)
T KOG0102|consen 378 G-KGPS-------KGVNPDEAVAGGAAIQG 399 (640)
T ss_pred C-CCCC-------CCcCCcchhccchhhcc
Confidence 2 2222 11245566666665543
No 55
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.42 E-value=7.3e-07 Score=83.14 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=50.7
Q ss_pred cCCCCeEEeechhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCCeecC-CceEEEcccHHHHHHHHHHHHHh
Q 017099 128 TFNAPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALP-HAILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 128 ~~~~~~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~pv~~g~~l~-~~~~~~~~GG~~l~~~l~~~l~~ 197 (377)
.+.+..|.+.|++++|.|.. ...+.+|||||+.+|+++.|.++.... .+....++|-..+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 34477999999999998864 236789999999999999988765443 33345688999999999988855
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.36 E-value=2.1e-05 Score=70.74 Aligned_cols=43 Identities=30% Similarity=0.623 Sum_probs=35.6
Q ss_pred CeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHh
Q 017099 298 NIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
.|+++||.++.+++.+.+.+.|. ..+..++++.+..-.||+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence 79999999999999999998882 34555677888888998863
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.14 E-value=1.4e-05 Score=75.25 Aligned_cols=48 Identities=27% Similarity=0.557 Sum_probs=40.7
Q ss_pred hhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhc
Q 017099 295 LYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 295 l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+-+.|+++||.++.+|+.+.+.+.|. .+++-|++|++....||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 33569999999999999999999883 3566688999999999999984
No 58
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.10 E-value=1.8e-05 Score=75.47 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=95.8
Q ss_pred CCCCCCCCcEEEeCCCCceEEeeeCCC----CCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCC
Q 017099 1 MADTEDIQPLVCDNGTGMVKAGFAGDD----APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHG 76 (377)
Q Consensus 1 ~~~~~~~~~vvID~Gs~~~k~G~~~~~----~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g 76 (377)
||+ ++-..|.||+||+||.+=|+.-. .+....|...-. +++++.- . .-..-|+...
T Consensus 1 ~~~-~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~-----------dkev~yr------S--~i~fTPl~~~ 60 (475)
T PRK10719 1 MMT-EELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEII-----------DKEIIYR------S--PIYFTPLLKQ 60 (475)
T ss_pred CCc-cEEEEEEEeccCceEEEEEEEEEEecccccccCceEEEe-----------eeEEEEe------c--CceecCCCCC
Confidence 454 66778999999999998888422 222233322110 1111110 0 1134577777
Q ss_pred ccCCHHHHHHHHHHhcccccccCCCC--CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEee-------ch----hhhh
Q 017099 77 IVSNWDDMEKIWHHTFYNELRVAPEE--HPILLTEAPLNPKANREKMTQIMFETFNAPAMYVA-------IQ----AVLS 143 (377)
Q Consensus 77 ~i~~~~~~~~~~~~~~~~~L~~~~~~--~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~-------~~----~~~a 143 (377)
..-|-+.++.+.+.=| +.-++.+++ ..+.++.-..... +++.+++ +.++...=-|+ -+ ++++
T Consensus 61 ~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~---~Nl~~~v-~~~~~~~gdfVVA~AG~~le~iva~~AS 135 (475)
T PRK10719 61 GEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARK---ENAREVV-MALSGSAGDFVVATAGPDLESIIAGKGA 135 (475)
T ss_pred ccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHH---HHHHHHH-HHhcccccceeeeccCccHHHhhhHHHh
Confidence 7778999999999887 666766543 3344443322233 3333333 33221111111 11 3332
Q ss_pred hh---hcC-CceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHH
Q 017099 144 LY---ASG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 144 ~~---~~g-~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~ 190 (377)
+. +-- ....++||||+++|+++.+.+|.++ +...+++||++++..
T Consensus 136 g~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D 184 (475)
T PRK10719 136 GAQTLSEERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETD 184 (475)
T ss_pred hHHHhhhhccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEEC
Confidence 22 211 2578999999999999999999998 778899999877654
No 59
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.08 E-value=3.8e-05 Score=68.51 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=40.7
Q ss_pred cCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhh
Q 017099 297 GNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
.+|+++||.++-+++.+.|+++|... ...+.+..+++|++....||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999999532 124556667889999999999875
No 60
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.06 E-value=3.2e-05 Score=69.95 Aligned_cols=49 Identities=16% Similarity=0.378 Sum_probs=40.0
Q ss_pred hhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEE-CCCCCccccchhhHHhhc
Q 017099 294 DLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVV-APPERKYSVWIGGSILAS 350 (377)
Q Consensus 294 ~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~-~~~~~~~~~w~Gasi~a~ 350 (377)
.+-+.|+++||.++.+|+.+.|+++|.. ++. .+++|++..-.||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 3446799999999999999999998842 333 356789999999999984
No 61
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.97 E-value=0.00037 Score=64.34 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=39.9
Q ss_pred eEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhc
Q 017099 299 IVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 299 Ivl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
||++||+++..++.+.+.+.+ ..+|..||+|++.-..||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHh
Confidence 999999999999999999888 45778899999999999999885
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.25 E-value=0.0015 Score=62.71 Aligned_cols=173 Identities=18% Similarity=0.268 Sum_probs=106.9
Q ss_pred CCcEEEeCCCCceEEeeeC---CC-CCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHH
Q 017099 7 IQPLVCDNGTGMVKAGFAG---DD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 7 ~~~vvID~Gs~~~k~G~~~---~~-~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (377)
...|.||+||+||.+=|+. ++ .+.+..|...- ++.+..=+. .-..-|+.+...-|-+
T Consensus 3 i~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I-----------------~dkeViYrS--~I~fTPl~~~~~ID~~ 63 (473)
T PF06277_consen 3 ILSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI-----------------VDKEVIYRS--PIYFTPLLSQTEIDAE 63 (473)
T ss_pred eEEEEEeecCCceeEEEEEeEEEeccCCCccceEEE-----------------eccEEEecC--CccccCCCCCCccCHH
Confidence 4579999999999988885 22 23333333211 111110000 1134578877777999
Q ss_pred HHHHHHHHhcccccccCCCC--C-cEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEe---echhhhhhhhcCC-------
Q 017099 83 DMEKIWHHTFYNELRVAPEE--H-PILLTEAPLNPKANREKMTQIMFETFNAPAMYV---AIQAVLSLYASGR------- 149 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~--~-~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g~------- 149 (377)
+++++++.=| +.-++.+++ . -|+++-... .++.-+.+.+.|-+.+|==.|.- --+++.|..++|.
T Consensus 64 al~~iv~~eY-~~Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~ 141 (473)
T PF06277_consen 64 ALKEIVEEEY-RKAGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEH 141 (473)
T ss_pred HHHHHHHHHH-HHcCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhh
Confidence 9999999997 667776653 3 355554333 44444455555545444211111 2366677777763
Q ss_pred -ceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHH-----------HHHHHHHHHHhcCCCc
Q 017099 150 -TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-----------LTDALMKILTERGYSF 202 (377)
Q Consensus 150 -~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~-----------l~~~l~~~l~~~~~~~ 202 (377)
..-+=+|||+++|.++.+.+|.++ ...-+++||+. +....+.++.+.+.+.
T Consensus 142 ~~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 142 HTVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CCeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 345668999999999999999999 66678999963 4455566666655543
No 63
>PRK13317 pantothenate kinase; Provisional
Probab=96.09 E-value=0.09 Score=47.90 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=48.8
Q ss_pred ChhHHHHHHHhcCCHH-HHHhhhcCeEEec-CCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhc
Q 017099 275 GIHETTYNSIMKCDVD-IRKDLYGNIVLSG-GSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 275 ~l~~~I~~~i~~~~~~-~r~~l~~nIvl~G-G~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+|..+|.+.|..+-.- .|..-.++|+++| |.++.|++.+.|.+.++-. ..++.-+++|++...+||++++.
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC-----CceEEecCCCchhHHHHHHHHhh
Confidence 3444444444433211 2334448999999 7999999999999877421 24566678899999999998874
No 64
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.97 E-value=0.025 Score=53.23 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=42.4
Q ss_pred hhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhh
Q 017099 295 LYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 295 l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+-..|+++||.++-+++.+.|++.|....+ ..+++.|++|++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 346899999999999999999999965432 2356668899999999999875
No 65
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.96 E-value=0.011 Score=53.88 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=34.1
Q ss_pred eEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhh
Q 017099 299 IVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 299 Ivl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|+++||..+-+.+.+.|++.|.+..+.. .+..+.+|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999988777777765555544432 23344567899999999886
No 66
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.78 E-value=0.02 Score=50.93 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=65.2
Q ss_pred CHHHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCc-----eEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHH
Q 017099 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~ 188 (377)
.+..-+.+++.+-++++++.-.---++-||..++-.+ --.|+|+|+++|+.+-+-....+ ....+-=.|+.++
T Consensus 93 ~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v--~~iHlAGAG~mVT 170 (332)
T PF08841_consen 93 DKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV--TAIHLAGAGNMVT 170 (332)
T ss_dssp SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E--EEEEEE-SHHHHH
T ss_pred ccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE--EEEEecCCchhhH
Confidence 4445567788888889999888888999988876432 34788999999999888655444 3344555789999
Q ss_pred HHHHHHHHhcCCCccChhHHHHHHHHhHhc
Q 017099 189 DALMKILTERGYSFTTTAEREIVRDMKEKL 218 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~ 218 (377)
-.+..-| |. .+.+++|++|+.-
T Consensus 171 mlI~sEL---Gl-----~d~~lAE~IKkyP 192 (332)
T PF08841_consen 171 MLINSEL---GL-----EDRELAEDIKKYP 192 (332)
T ss_dssp HHHHHHC---T------S-HHHHHHHHHS-
T ss_pred HHHHHhh---CC-----CCHHHHHHhhhcc
Confidence 8887766 22 2678899998743
No 67
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.59 E-value=0.088 Score=52.30 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=51.8
Q ss_pred CCCCCHHHHHHHHhhhcccCCCC--eEEeechhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCCeecCCceEEEcc
Q 017099 110 APLNPKANREKMTQIMFETFNAP--AMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182 (377)
Q Consensus 110 p~~~~~~~~~~l~~~lfe~~~~~--~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~ 182 (377)
...-.-..++.+++.+.+..|++ .+.=-.++.++.++. ...+++|+|||+++|.++.+-+|.+. ...++|+
T Consensus 85 sAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~l 162 (496)
T PRK11031 85 ATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SLFSLSM 162 (496)
T ss_pred HHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--eeeEEec
Confidence 33434455666777776777765 222233333333221 12358999999999999999888877 6678999
Q ss_pred cHHHHHHH
Q 017099 183 AGRDLTDA 190 (377)
Q Consensus 183 GG~~l~~~ 190 (377)
|.-.+++.
T Consensus 163 G~vrl~e~ 170 (496)
T PRK11031 163 GCVTWLER 170 (496)
T ss_pred cchHHHHH
Confidence 98776544
No 68
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.19 E-value=0.071 Score=49.32 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=51.9
Q ss_pred CCCCCHHHHHHHHhhhcccCCCCeEEeec---hhhhhhhhc----CCceEEEEeCCCCceEEEEeeCCeecCCceEEEcc
Q 017099 110 APLNPKANREKMTQIMFETFNAPAMYVAI---QAVLSLYAS----GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182 (377)
Q Consensus 110 p~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~----g~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~ 182 (377)
..+-.-..++.+++.+.+..|++ +.++. ++.+...+. ...+++|+|+|+++|.++.+.++.+. ...++|+
T Consensus 79 sa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~l 155 (300)
T TIGR03706 79 AALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGVSLPL 155 (300)
T ss_pred HHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEEEEcc
Confidence 33334455666777776666654 23444 333322221 22457999999999999999888877 6678999
Q ss_pred cHHHHHHHH
Q 017099 183 AGRDLTDAL 191 (377)
Q Consensus 183 GG~~l~~~l 191 (377)
|.-.+++.+
T Consensus 156 G~vrl~e~f 164 (300)
T TIGR03706 156 GCVRLTEQF 164 (300)
T ss_pred ceEEhHHhh
Confidence 987777664
No 69
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=94.97 E-value=0.24 Score=44.96 Aligned_cols=68 Identities=16% Similarity=0.013 Sum_probs=44.2
Q ss_pred ChhHHHHHHHhcCCH-HHHHhhhcCeEEecC-CCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHH
Q 017099 275 GIHETTYNSIMKCDV-DIRKDLYGNIVLSGG-STMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 275 ~l~~~I~~~i~~~~~-~~r~~l~~nIvl~GG-~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
+|..+|.+.|..+.. .-+..-.++|+++|| .+..|.+.+++..-+.- . ..++.-+.+..+....||.+
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-~----~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-W----SKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-c----CceEEEECCcchHHHhhhcc
Confidence 455555555544321 124455789999999 78889899888876642 1 24555566667777777764
No 70
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.1 Score=51.38 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=47.2
Q ss_pred HHHHHHHhhhcccCCCC--eEEeechhhhhhhhc----C-CceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHH
Q 017099 116 ANREKMTQIMFETFNAP--AMYVAIQAVLSLYAS----G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 116 ~~~~~l~~~lfe~~~~~--~v~~~~~~~~a~~~~----g-~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~ 188 (377)
.....+.+.+-+.+|++ .+.=-.++-.+.++. + ...++|+|+|+++|.++-+-+..+. ...++|+|.-.++
T Consensus 88 ~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt 165 (492)
T COG0248 88 PNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLT 165 (492)
T ss_pred CCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEee
Confidence 33444555555566665 223333444444432 3 5689999999999999988877766 6677888865544
Q ss_pred HHH
Q 017099 189 DAL 191 (377)
Q Consensus 189 ~~l 191 (377)
+.+
T Consensus 166 ~~~ 168 (492)
T COG0248 166 ERF 168 (492)
T ss_pred hhh
Confidence 443
No 71
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.07 E-value=2.2 Score=39.70 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=38.4
Q ss_pred HHhhhcccCCCCeEEeechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 017099 121 MTQIMFETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~~g~~l~ 174 (377)
+.+.+-+.+++| |++.++.-+++++. +..+.++|.+|.+- -...|.+|+++.
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 444554667887 77899888887732 45789999999874 677788998764
No 72
>PRK10854 exopolyphosphatase; Provisional
Probab=94.00 E-value=0.14 Score=51.16 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHhhhcccCCCCe--EEeechhhhhhhhcC-----CceEEEEeCCCCceEEEEeeCCeecCCceEEEcc
Q 017099 110 APLNPKANREKMTQIMFETFNAPA--MYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182 (377)
Q Consensus 110 p~~~~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~ 182 (377)
...-....+..+++.+.+..|++- +.=-.++.+..++.- ..+++|||||+++|.++.+-+|.+. ...+.++
T Consensus 90 sAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~S~~l 167 (513)
T PRK10854 90 HTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRM 167 (513)
T ss_pred HHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--EeEEEec
Confidence 333344556667777767777652 222223333322211 2458999999999999999988766 4556688
Q ss_pred cHHHHHH
Q 017099 183 AGRDLTD 189 (377)
Q Consensus 183 GG~~l~~ 189 (377)
|.-.+++
T Consensus 168 G~vrl~e 174 (513)
T PRK10854 168 GCVSFAQ 174 (513)
T ss_pred ceeeHHh
Confidence 8765555
No 73
>PRK03011 butyrate kinase; Provisional
Probab=93.76 E-value=5.8 Score=37.65 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=31.8
Q ss_pred cCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhH
Q 017099 297 GNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGS 346 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gas 346 (377)
+-|||+||.+.-+-|.+++++.+..+. ++.+....+-..+.-.||.
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHH
Confidence 569999999987777788888777653 4566655544445555553
No 74
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.66 E-value=0.31 Score=38.34 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=41.1
Q ss_pred EEEeCCCCceEEEEeeCCeecCCceEEEccc--------HHHHH--HHHHHHHHhcCCCccChhHHHHHHHH-hHhccee
Q 017099 153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DALMKILTERGYSFTTTAEREIVRDM-KEKLAYI 221 (377)
Q Consensus 153 lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~G--------G~~l~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~v 221 (377)
++||+|++.|.++....+... ....+++| |.+++ +.+.+.++. ..+.+|++ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 689999999999999888776 57788999 99999 888877732 34557777 7666543
No 75
>PRK09557 fructokinase; Reviewed
Probab=92.86 E-value=3.9 Score=37.68 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=35.5
Q ss_pred HhhhcccCCCCeEEeechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecCC
Q 017099 122 TQIMFETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 122 ~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~~g~~l~~ 175 (377)
.+.+-+.+++| |.+.++.-|++++. +..+.+.+.+|. .+-...|.+|.++..
T Consensus 89 ~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igt-GiG~giv~~G~l~~G 147 (301)
T PRK09557 89 DKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGT-GCGAGVAINGRVHIG 147 (301)
T ss_pred HHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEcc-ceEEEEEECCEEEec
Confidence 33444556887 77889888887653 235677888874 466777789987643
No 76
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=91.95 E-value=0.15 Score=46.81 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=22.0
Q ss_pred hcCCceEEEEeCCCCceEEEEeeCCeecC
Q 017099 146 ASGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 146 ~~g~~~~lVVDiG~~~t~v~pv~~g~~l~ 174 (377)
..+..+++++|+|+++|+|++|.||.+..
T Consensus 73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 73 LTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp -HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred cCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 55888999999999999999999999863
No 77
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.53 E-value=0.38 Score=44.08 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=50.0
Q ss_pred CHHHHHHHHhhhcccCCCCeEEeec---hhhhhh----hhc-CCceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHH
Q 017099 114 PKANREKMTQIMFETFNAPAMYVAI---QAVLSL----YAS-GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~----~~~-g~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~ 185 (377)
.-..+..+++.+.+..|++- .+++ ++.++. .+. ...+++|+|+|+++|.++.+.+|.+. ...++|+|.-
T Consensus 69 ~A~N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~v 145 (285)
T PF02541_consen 69 EAKNSDEFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FSQSLPLGAV 145 (285)
T ss_dssp HSTTHHHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EEEEES--HH
T ss_pred hCcCHHHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--EeeeeehHHH
Confidence 33455666777767777653 2333 222222 223 56889999999999999999999988 7788999987
Q ss_pred HHHHHH
Q 017099 186 DLTDAL 191 (377)
Q Consensus 186 ~l~~~l 191 (377)
.+.+.+
T Consensus 146 rl~e~~ 151 (285)
T PF02541_consen 146 RLTERF 151 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776665
No 78
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=91.14 E-value=0.32 Score=43.36 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=44.2
Q ss_pred hhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCC---CceEEEECCCCCccccchhhHHhhcc
Q 017099 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPS---SMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~---~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.+.+.+.+...-.+.++ .-|.++|-.++||-|-.-+++.|+..+.. ...++.....-..-.+..||+++|+-
T Consensus 257 l~e~vvK~v~tllps~~p---d~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAna 332 (374)
T COG2441 257 LIEGVVKDVFTLLPSTYP---DAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANA 332 (374)
T ss_pred HHHHHHHHHHHhccccCc---ceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhh
Confidence 556666666555333333 24999999999998877777777654432 11233332222234477888888864
No 79
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=91.08 E-value=1.1 Score=41.73 Aligned_cols=49 Identities=22% Similarity=0.370 Sum_probs=36.9
Q ss_pred CeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCC---CCccccchhhHHhhc
Q 017099 298 NIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILAS 350 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~ 350 (377)
-|+|+|-.+.++.|.+.+...|...++- ++.... -..-.+-.|++++|+
T Consensus 263 ~IilSGr~~~~~~~~~~l~~~l~~~~~~----~v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 263 EIILSGRFSRIPEFRKKLEDRLEDYFPV----KVRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred EEEEeccccccHHHHHHHHHHHHhhccc----ceeecccccccchhhhhhHHHHhh
Confidence 4999999999999999999999988762 222211 112448899999987
No 80
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=90.46 E-value=3.3 Score=38.19 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=82.8
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCC---------CCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeecccc
Q 017099 4 TEDIQPLVCDNGTGMVKAGFAGDD---------APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIE 74 (377)
Q Consensus 4 ~~~~~~vvID~Gs~~~k~G~~~~~---------~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~ 74 (377)
++....|.||+||++|.+=|+.-+ .|++.|-. ++ . . +...-+..|+.
T Consensus 2 te~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~-----kd-----------i-------~-~rS~i~FTPv~ 57 (473)
T COG4819 2 TEQILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIK-----KD-----------I-------S-WRSPIFFTPVD 57 (473)
T ss_pred cceeeeeeeeccCceeeeeeeeeEEeecccccccceEEEEe-----cc-----------e-------e-eecceeeeeec
Confidence 567788999999999999887532 23222110 00 0 0 00011334554
Q ss_pred CCccCCHHHHHHHHHHhcccccccCCCC---CcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEe---echhhhhhhhcC
Q 017099 75 HGIVSNWDDMEKIWHHTFYNELRVAPEE---HPILLTEAPLNPKANREKMTQIMFETFNAPAMYV---AIQAVLSLYASG 148 (377)
Q Consensus 75 ~g~i~~~~~~~~~~~~~~~~~L~~~~~~---~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g 148 (377)
..--.|.++++.+...=| ..-++.++. -.|+++-...-.+.-|.. +..+-..+|-=.|.- --+++.|--++|
T Consensus 58 ~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~v-l~alSg~aGDFVVAtAGPdLESiIAGkGaG 135 (473)
T COG4819 58 KQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARPV-LMALSGSAGDFVVATAGPDLESIIAGKGAG 135 (473)
T ss_pred ccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchHH-HHHhhhcccceEEEecCCCHHHHhccCCcc
Confidence 444446677887776665 455665543 346666443332222222 222222232111111 113333333333
Q ss_pred C------ceE--EEEeCCCCceEEEEeeCCeecCCceEEEcccHHHH
Q 017099 149 R------TTG--IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187 (377)
Q Consensus 149 ~------~~~--lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l 187 (377)
. .++ +=+|||+++|..+-+-.|++. ...-+++||+.+
T Consensus 136 A~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~--dTaCLdiGGRLi 180 (473)
T COG4819 136 AQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVS--DTACLDIGGRLI 180 (473)
T ss_pred ccchhhhhceEEEEEeccCCccceeeecccccc--cceeeecCcEEE
Confidence 2 233 447999999999999889888 444568888644
No 81
>PRK13321 pantothenate kinase; Reviewed
Probab=88.64 E-value=1.6 Score=39.35 Aligned_cols=19 Identities=32% Similarity=0.407 Sum_probs=16.4
Q ss_pred cEEEeCCCCceEEeeeCCC
Q 017099 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~ 27 (377)
.+.||+|.+++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4789999999999998654
No 82
>PRK13324 pantothenate kinase; Reviewed
Probab=88.38 E-value=4.7 Score=36.32 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.1
Q ss_pred cEEEeCCCCceEEeeeCCC
Q 017099 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~ 27 (377)
.+.||+|-+++|.|+..++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 4789999999999988643
No 83
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=88.38 E-value=0.48 Score=43.94 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=26.1
Q ss_pred hhcCCceEEEEeCCCCceEEEEeeCCeecC
Q 017099 145 YASGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 145 ~~~g~~~~lVVDiG~~~t~v~pv~~g~~l~ 174 (377)
++....+++.+|+|+++|+|+||.+|.+..
T Consensus 123 la~~~~~~I~~DmGGTTtDi~~i~~G~p~~ 152 (318)
T TIGR03123 123 IAKRIPECLFVDMGSTTTDIIPIIDGEVAA 152 (318)
T ss_pred HHhcCCCEEEEEcCccceeeEEecCCEeee
Confidence 334578999999999999999999999884
No 84
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=88.00 E-value=23 Score=33.54 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=21.3
Q ss_pred cCeEEecCCCCCCChHHHHHHHHhhhC
Q 017099 297 GNIVLSGGSTMFPGIADRMSKEISALA 323 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~el~~~~ 323 (377)
+-|||+||.+.-+-+.+++++.+..+.
T Consensus 295 D~IV~gGGI~e~~~l~~~I~~~l~~~a 321 (351)
T TIGR02707 295 DAIVLTGGLAYSKYFVSEIIKRVSFIA 321 (351)
T ss_pred CEEEEcchhhcCHHHHHHHHHHHHhhC
Confidence 569999999987777777777777664
No 85
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=87.95 E-value=4.3 Score=35.22 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.6
Q ss_pred EEEeCCCCceEEeeeCCCC
Q 017099 10 LVCDNGTGMVKAGFAGDDA 28 (377)
Q Consensus 10 vvID~Gs~~~k~G~~~~~~ 28 (377)
++||+|-+++|+|+..++.
T Consensus 2 L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEE-SSEEEEEEEETTE
T ss_pred EEEEECCCeEEEEEEECCE
Confidence 7899999999999987653
No 86
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=87.71 E-value=7.9 Score=34.63 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.9
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017099 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~ 26 (377)
-++||+|.++++.|...+
T Consensus 2 ~L~iDiGNT~~~~a~~~~ 19 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG 19 (251)
T ss_pred eEEEEeCCCeEEEEEecC
Confidence 479999999999998874
No 87
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=84.66 E-value=0.66 Score=41.04 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.3
Q ss_pred CceEEEEeCCCCceEEEEeeCCe
Q 017099 149 RTTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 149 ~~~~lVVDiG~~~t~v~pv~~g~ 171 (377)
..+|+.||+|+++|+|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46799999999999999999996
No 88
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=83.34 E-value=15 Score=32.81 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.7
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017099 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 vvID~Gs~~~k~G~~~~~ 27 (377)
++||+|-+++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999988654
No 89
>PRK13318 pantothenate kinase; Reviewed
Probab=81.75 E-value=24 Score=31.70 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.8
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017099 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~ 26 (377)
.+.||+|.+++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999998863
No 90
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=80.45 E-value=3.1 Score=36.23 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=34.9
Q ss_pred hcCCceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcC
Q 017099 146 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG 199 (377)
Q Consensus 146 ~~g~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~ 199 (377)
-+|..+..|+-+.++.|.|+.+.+.+--- ...++++.=-.+...+.+.|.-.+
T Consensus 120 iTgA~nPvvLYvSGGNTQvIAYse~rYrI-FGETlDIAvGNClDRFAR~lklsN 172 (336)
T KOG2708|consen 120 ITGAQNPVVLYVSGGNTQVIAYSEKRYRI-FGETLDIAVGNCLDRFARVLKLSN 172 (336)
T ss_pred eccCCCCEEEEEeCCceEEEEEccceeee-ecceehhhhhhhHHHHHHHhcCCC
Confidence 34567889999999999999998874321 224555553355556666665443
No 91
>PRK13329 pantothenate kinase; Reviewed
Probab=79.57 E-value=15 Score=32.87 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=15.8
Q ss_pred cEEEeCCCCceEEeeeC
Q 017099 9 PLVCDNGTGMVKAGFAG 25 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~ 25 (377)
.++||.|.+.+|.++..
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 89999999999999875
No 92
>PRK13326 pantothenate kinase; Reviewed
Probab=78.60 E-value=36 Score=30.75 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.3
Q ss_pred cEEEeCCCCceEEeeeCCCC
Q 017099 9 PLVCDNGTGMVKAGFAGDDA 28 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~~ 28 (377)
-++||+|-+++|+|+..++.
T Consensus 8 ~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEeCCCeEEEEEEECCE
Confidence 48999999999999987653
No 93
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=75.34 E-value=28 Score=31.14 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=35.3
Q ss_pred ccCCCCeEEeechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeec
Q 017099 127 ETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~~g~~l 173 (377)
...+... .+.+...||.+++ .....+|||+|.++|-.+.|.+|++.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 3344444 6777777777654 34688999999999999999999876
No 94
>PRK13320 pantothenate kinase; Reviewed
Probab=74.17 E-value=35 Score=30.43 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.6
Q ss_pred cEEEeCCCCceEEeeeCCC
Q 017099 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~ 27 (377)
.+.||+|.+++|.|+..++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEEeCCCcEEEEEEECC
Confidence 6899999999999988643
No 95
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.79 E-value=4 Score=42.04 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=24.5
Q ss_pred hhhcCCce--EEEEeCCCCceEEEEeeCCeec
Q 017099 144 LYASGRTT--GIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 144 ~~~~g~~~--~lVVDiG~~~t~v~pv~~g~~l 173 (377)
+|-+|..+ ++++|+|+++|+++-+.+|.+.
T Consensus 270 a~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 270 AYLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred HHhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 33346666 9999999999999999988665
No 96
>PRK13331 pantothenate kinase; Reviewed
Probab=60.55 E-value=9.1 Score=34.32 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=24.8
Q ss_pred CCCCCCCCcEEEeCCCCceEEeeeCCC
Q 017099 1 MADTEDIQPLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 1 ~~~~~~~~~vvID~Gs~~~k~G~~~~~ 27 (377)
||+...+.-++||+|.+++++|+..++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECC
Confidence 889999999999999999999998754
No 97
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=58.14 E-value=25 Score=29.78 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=17.3
Q ss_pred cccCCccCCHHHHHHHHHHhc
Q 017099 72 PIEHGIVSNWDDMEKIWHHTF 92 (377)
Q Consensus 72 p~~~g~i~~~~~~~~~~~~~~ 92 (377)
-+++|.+.|.+.+.+.++.++
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai 56 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAV 56 (187)
T ss_pred CccCcEEECHHHHHHHHHHHH
Confidence 468899999998887777776
No 98
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=56.08 E-value=90 Score=28.38 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=34.6
Q ss_pred hcccCCCCeEEeechhhhhhhhc------CCceEEEEeCCCCceEEEEeeCCeecCC
Q 017099 125 MFETFNAPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 125 lfe~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~v~pv~~g~~l~~ 175 (377)
+-+.+++| |++.++.-+++++- +..+.+.|.+|.+ +-...|.||+++..
T Consensus 92 l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G-iG~giv~~G~~~~G 146 (291)
T PRK05082 92 LEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG-VGGGIVLNGKLLTG 146 (291)
T ss_pred HHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC-cceEEEECCEEeeC
Confidence 33556887 77899888887642 3467888999855 55666779887643
No 99
>PRK13322 pantothenate kinase; Reviewed
Probab=56.01 E-value=1.3e+02 Score=26.80 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=16.0
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017099 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~ 26 (377)
.++||+|-+++|.|+..+
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 589999999999999864
No 100
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=54.62 E-value=6.1 Score=37.52 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=20.4
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHhh
Q 017099 296 YGNIVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~el~~ 321 (377)
...|++|||+++-+-|.++|++.+..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 35799999999999999999988744
No 101
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=48.02 E-value=30 Score=31.61 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=38.9
Q ss_pred hhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhh
Q 017099 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|...+.+.+.-++. +.|||.|+.+..+-|.+++++.+..... ...+.+..+.....++-.||+.++
T Consensus 221 la~~l~~l~~~~dp-------e~IvlgG~~~~~~~~~~~i~~~l~~~~~-~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 221 IARLIADLKATLDC-------QCVVLGGSVGLAEGYLELVQAYLAQEPA-IYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHhCC-------CEEEEcCccccHHHHHHHHHHHHHhccc-ccCCeEEECccCCchhhhhHHHHh
Confidence 44444444444443 3578877777666677777777766421 113445444444566777888765
No 102
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=44.94 E-value=23 Score=26.10 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.3
Q ss_pred CcEEEeCCCCceEEeeeCC
Q 017099 8 QPLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~ 26 (377)
..+.||+|.+.+++|+..+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 3789999999999998754
No 103
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=44.04 E-value=30 Score=29.28 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=35.0
Q ss_pred hhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 295 LYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 295 l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
-.+.|+++||.++-+-+.+.+..-+. .+|.+... ..++-.||+++|..
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHHh
Confidence 45779999999999877777776663 25555443 46688899988753
No 104
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=43.13 E-value=14 Score=34.76 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=34.2
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCC------CCccccchhhHHhhc
Q 017099 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP------ERKYSVWIGGSILAS 350 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~ 350 (377)
.++++++||.+.-.-|+++|++..... .++++.|+ +.-.-+|.|...+..
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~~-----~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKER-----GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-----CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 467999999999998888888766542 34555443 223447888766544
No 105
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=43.10 E-value=49 Score=31.45 Aligned_cols=22 Identities=9% Similarity=0.216 Sum_probs=17.5
Q ss_pred cccCCccCCHHHHHHHHHHhcc
Q 017099 72 PIEHGIVSNWDDMEKIWHHTFY 93 (377)
Q Consensus 72 p~~~g~i~~~~~~~~~~~~~~~ 93 (377)
-+++|.|.|.+.+.+.++.++.
T Consensus 37 gi~~G~I~d~~~~~~~i~~al~ 58 (371)
T TIGR01174 37 GIKKGVINDIEAAVGSIQRAIE 58 (371)
T ss_pred CccCcEEEcHHHHHHHHHHHHH
Confidence 3688999999888777777763
No 106
>PRK09698 D-allose kinase; Provisional
Probab=42.75 E-value=48 Score=30.37 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=35.5
Q ss_pred HHhhhcccCCCCeEEeechhhhhhhhc------CCceEEEEeCCCCceEEEEeeCCeecCC
Q 017099 121 MTQIMFETFNAPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~v~pv~~g~~l~~ 175 (377)
+.+.+-+.+++| |.+.++.-|++++- +..+.+.|.+|.+ +-...|.+|+++..
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv~~G~~~~G 154 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVWMNGAPWTG 154 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEEECCEEeeC
Confidence 334443557887 77888888776531 3457888999866 55666789987643
No 107
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=42.13 E-value=41 Score=30.89 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=37.2
Q ss_pred HHhhhcccCCCCeEEeechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecCC
Q 017099 121 MTQIMFETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~~g~~l~~ 175 (377)
+.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|.+ +-...|.+|+++..
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 334444567887 77889888877542 3467888899865 67777889987644
No 108
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=40.13 E-value=82 Score=23.05 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=25.6
Q ss_pred EEEEeCCCCceEEEEe-eCCeecCCceEEEcccHHHHHHHHHHHH
Q 017099 152 GIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKIL 195 (377)
Q Consensus 152 ~lVVDiG~~~t~v~pv-~~g~~l~~~~~~~~~GG~~l~~~l~~~l 195 (377)
.+.||+|.+.+.++.+ .+|..+........-+...+-+.+.+++
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i 47 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLI 47 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHH
Confidence 5789999999988877 4666664333222223334444444444
No 109
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=39.50 E-value=2.5e+02 Score=25.62 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=39.0
Q ss_pred hhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhC-CCCceEEEECCCCCccccchhhHHhh
Q 017099 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA-PSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~-~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|...|.+.+.-++.+ .|||-||.+..+-|.+.+++.+.+.. +...++.+..+.....+.-.||+.++
T Consensus 233 la~~l~n~~~~ldP~-------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIVDPH-------LVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHcCCC-------EEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 344444444444433 57777777776777788888887543 22123444444444566677887765
No 110
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=39.16 E-value=25 Score=33.39 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.9
Q ss_pred cCeEEecCCCCCCChHHHHHHHH
Q 017099 297 GNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~el 319 (377)
+.|++|||++.-|-|.+||++.|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999999887
No 111
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.55 E-value=1.5e+02 Score=26.78 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=27.3
Q ss_pred EeechhhhhhhhcC----CceEEEEeCCCCceEEEEeeCCeec
Q 017099 135 YVAIQAVLSLYASG----RTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 135 ~~~~~~~~a~~~~g----~~~~lVVDiG~~~t~v~pv~~g~~l 173 (377)
.+.++-.++.+++- ..-++|||+|.++|..+.|.++++.
T Consensus 208 v~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 208 VAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 34444444444332 2468999999999999999888764
No 112
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=35.42 E-value=3.2e+02 Score=24.25 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=36.6
Q ss_pred HHhhhcccCCCCeEEeechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecCC
Q 017099 121 MTQIMFETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~~g~~l~~ 175 (377)
+.+.+=+.+++| |.+.++.-+++++. +..+.+.|-+|.+ +-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG-iG~giv~~G~l~~G 147 (256)
T PRK13311 88 LQADLSRLIQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG-VGGGLIVNGSIVSG 147 (256)
T ss_pred hHHHHHHHHCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC-eEEEEEECCEEecC
Confidence 334443556777 77888888877643 3467888888855 67777889987753
No 113
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=35.37 E-value=28 Score=32.56 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCC------CCccccchhhHHhhcc
Q 017099 291 IRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP------ERKYSVWIGGSILASL 351 (377)
Q Consensus 291 ~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~l 351 (377)
++..=.+.++++||.+.-..|++++++.... ..++++.|| +.-+-+|.|...|.+-
T Consensus 257 l~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~-----~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~g 318 (342)
T COG0533 257 LKHTGKKELVIAGGVAANSRLREMLEEMCKE-----RGAEVYIPPLELCTDNAAMIAYAGLLRYKAG 318 (342)
T ss_pred HHHhCCCEEEEeccHHHhHHHHHHHHHHHHh-----cCCEEEcCChHhccchHHHHHHHHHHHHHcC
Confidence 3334446799999999998888888766642 134554443 2334578888887763
No 114
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=35.06 E-value=96 Score=30.14 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=16.7
Q ss_pred cccCCccCCHHHHHHHHHHhc
Q 017099 72 PIEHGIVSNWDDMEKIWHHTF 92 (377)
Q Consensus 72 p~~~g~i~~~~~~~~~~~~~~ 92 (377)
-+++|.|.|.+.+.+-++.++
T Consensus 45 gi~~G~I~d~~~~~~aI~~av 65 (420)
T PRK09472 45 GMDKGGVNDLESVVKCVQRAI 65 (420)
T ss_pred CccCCEEEcHHHHHHHHHHHH
Confidence 457899999988877777776
No 115
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=34.44 E-value=69 Score=29.46 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=31.6
Q ss_pred EEEEeCCCCceEEEEeeCCeecCCceEEEcccHH---HHHHHHHHHHHhcCC
Q 017099 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR---DLTDALMKILTERGY 200 (377)
Q Consensus 152 ~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~---~l~~~l~~~l~~~~~ 200 (377)
.+=||+|+.+|.++.+.++.++ .....+-|++ ...+.|.+++.+.+.
T Consensus 34 ~~GIDiGStt~K~Vlld~~~i~--~~~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGELY--GYNSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEEeCchhEEEEEEeCCEEE--EEEeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 3457999999999999877655 3344566653 555566666665543
No 116
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=33.54 E-value=1.3e+02 Score=30.96 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=20.0
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhhc
Q 017099 103 HPILLTEAPLNPKANREKMTQIMF 126 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lf 126 (377)
+.++++.|+.+|+.+|+.+.+-++
T Consensus 464 RsiILTlPsAmPk~EreIfr~r~~ 487 (1014)
T COG4457 464 RSIILTLPSAMPKQEREIFRQRME 487 (1014)
T ss_pred hhheeeCCccCCchHHHHHHHHHH
Confidence 459999999999998887776665
No 117
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=30.78 E-value=50 Score=29.41 Aligned_cols=50 Identities=20% Similarity=0.469 Sum_probs=36.9
Q ss_pred eEEecCC-CCCCChHHHHHHHHhhhCCC-CceEEEECCCCCccccchhhHHhhcc
Q 017099 299 IVLSGGS-TMFPGIADRMSKEISALAPS-SMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Ivl~GG~-s~i~g~~~rl~~el~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|-+.|+. -+.|+|++++++.|..+.+. ..++.+.... -++=.||+|.|..
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-S---STHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEec---CchHHHHHHHHHH
Confidence 4444444 67899999999999999987 4466666553 5588999998864
No 118
>PF13941 MutL: MutL protein
Probab=30.42 E-value=31 Score=33.80 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=45.6
Q ss_pred CCcEEEEeCCCC------CHHHHHHHHhhhcccC-CCC---------eEEeechhhhhh-----hhc-CCceEEEEeCCC
Q 017099 102 EHPILLTEAPLN------PKANREKMTQIMFETF-NAP---------AMYVAIQAVLSL-----YAS-GRTTGIVLDSGD 159 (377)
Q Consensus 102 ~~~vvl~~p~~~------~~~~~~~l~~~lfe~~-~~~---------~v~~~~~~~~a~-----~~~-g~~~~lVVDiG~ 159 (377)
..+++++++.+. ...-|+.|.+++.++- +.| .-.+.|.|-+.. ++- +...-+|||+|+
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 356777775542 3455666665554311 111 223555555443 344 567889999999
Q ss_pred CceEEEEeeCCeecCC
Q 017099 160 GVSHTVPIYEGYALPH 175 (377)
Q Consensus 160 ~~t~v~pv~~g~~l~~ 175 (377)
.+|+|-.|.+|.+...
T Consensus 258 ATTDVhSv~~~~~~~~ 273 (457)
T PF13941_consen 258 ATTDVHSVAEGSPEIP 273 (457)
T ss_pred cccchhhhccCCcccc
Confidence 9999999997765533
No 119
>PRK15027 xylulokinase; Provisional
Probab=28.81 E-value=49 Score=32.78 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=31.1
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||+++-+-+.+-+..-+ +.+|.+. .+...++-.||+++|..
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~------g~pv~~~--~~~~~~~a~GaA~lA~~ 434 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADIS------GQQLDYR--TGGDVGPALGAARLAQI 434 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHh------CCeEEee--cCCCcchHHHHHHHHHH
Confidence 467999999999876655555444 1244332 22334678999999864
No 120
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=28.64 E-value=33 Score=33.50 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=42.5
Q ss_pred cEEEEeCCC------CCHHHHHHHHhhhcccC----C------CCeEEeechhhhhh-----hhcC------CceEEEEe
Q 017099 104 PILLTEAPL------NPKANREKMTQIMFETF----N------APAMYVAIQAVLSL-----YASG------RTTGIVLD 156 (377)
Q Consensus 104 ~vvl~~p~~------~~~~~~~~l~~~lfe~~----~------~~~v~~~~~~~~a~-----~~~g------~~~~lVVD 156 (377)
++.++++.+ +...-|+.|.+++.++. | +..-.+.|.|.+.. ++-+ ...-++||
T Consensus 176 ~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VD 255 (463)
T TIGR01319 176 FYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILID 255 (463)
T ss_pred eEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEE
Confidence 445665443 34677777777765432 1 12223444444432 2332 24579999
Q ss_pred CCCCceEEEEeeCCeec
Q 017099 157 SGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 157 iG~~~t~v~pv~~g~~l 173 (377)
||+.+|+|-.+.+|.+-
T Consensus 256 IGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 256 IGGATTDVHSAAAGELS 272 (463)
T ss_pred cCccccchhhccCCCcc
Confidence 99999999999999554
No 121
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=28.59 E-value=4.9e+02 Score=25.82 Aligned_cols=133 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred EEEeCCCCceEEeeeC----CCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHH
Q 017099 10 LVCDNGTGMVKAGFAG----DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vvID~Gs~~~k~G~~~----~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~ 85 (377)
||||-||+-+++=..+ ++.|..-+...+.......-.++...++ ..|.- +.++
T Consensus 12 iviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~n--------------------P~~a~---~~l~ 68 (501)
T KOG1386|consen 12 IVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADN--------------------PEGAS---VYLT 68 (501)
T ss_pred EEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccC--------------------hhhhH---HHHH
Q ss_pred HHHHHhcccccccCCCCCcEEEEeCCCC---CHHHHHHHHhhhcccCCCCeEEeec--------------------hhhh
Q 017099 86 KIWHHTFYNELRVAPEEHPILLTEAPLN---PKANREKMTQIMFETFNAPAMYVAI--------------------QAVL 142 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~~~vvl~~p~~~---~~~~~~~l~~~lfe~~~~~~v~~~~--------------------~~~~ 142 (377)
.+++.+-...=.-..++.||.|---.-+ +....+++++.+-..+...+=+.++ .-++
T Consensus 69 pLlefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~L 148 (501)
T KOG1386|consen 69 PLLEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLL 148 (501)
T ss_pred HHHHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHH
Q ss_pred hhhhc------CCceEEEEeCCCCceEEE
Q 017099 143 SLYAS------GRTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 143 a~~~~------g~~~~lVVDiG~~~t~v~ 165 (377)
..|.. ...|.=.+|+|+.+|.|+
T Consensus 149 G~f~~~~~~~~~~~T~G~lDlGGAS~QIt 177 (501)
T KOG1386|consen 149 GRFGKKNRWDSRKETFGALDLGGASTQIT 177 (501)
T ss_pred HhccccCcccCCcceeeeEecCCceeEEE
No 122
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=28.58 E-value=1.1e+02 Score=29.85 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=37.0
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceEEeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHHHH
Q 017099 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI 87 (377)
Q Consensus 8 ~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~ 87 (377)
..+.+|+||..+++ +.++-.|...+ +.++. |. .-.+-+++|.|.|.+...+.
T Consensus 7 ~iv~LDIGTskV~~-lVge~~~~g~i-~iig~-----------------g~---------~~SrGik~G~I~di~~~~~s 58 (418)
T COG0849 7 LIVGLDIGTSKVKA-LVGELRPDGRL-NIIGV-----------------GS---------HPSRGIKKGVIVDLDAAAQS 58 (418)
T ss_pred eEEEEEccCcEEEE-EEEEEcCCCeE-EEEee-----------------ec---------ccCcccccceEEcHHHHHHH
Confidence 68999999999997 44455554210 11221 11 12345789999999988777
Q ss_pred HHHhc
Q 017099 88 WHHTF 92 (377)
Q Consensus 88 ~~~~~ 92 (377)
++.+.
T Consensus 59 I~~av 63 (418)
T COG0849 59 IKKAV 63 (418)
T ss_pred HHHHH
Confidence 77765
No 123
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=28.48 E-value=95 Score=29.94 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=32.1
Q ss_pred eEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHHHhcCC
Q 017099 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 200 (377)
Q Consensus 151 ~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l~~~~~ 200 (377)
..+=||+|+++|.++.+.++.++.........--....+.+.+++.+.+.
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl 194 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGV 194 (404)
T ss_pred EEEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcCC
Confidence 35668999999999998888776444433222234555566666655443
No 124
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=28.12 E-value=97 Score=27.32 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 75 v~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 75 VLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 3455555555 257899999999888999999999999887765
No 125
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=27.74 E-value=77 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhhcccCCCCeEEeechh
Q 017099 101 EEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQA 140 (377)
Q Consensus 101 ~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~ 140 (377)
.+.-+++++|+-+..+..+++.+.+ +.|++|...+++..
T Consensus 186 aD~ai~VTEPTp~glhD~kr~~el~-~~f~ip~~iViNr~ 224 (284)
T COG1149 186 ADLAILVTEPTPFGLHDLKRALELV-EHFGIPTGIVINRY 224 (284)
T ss_pred CCEEEEEecCCccchhHHHHHHHHH-HHhCCceEEEEecC
Confidence 3567899999999999999999998 99999988777764
No 126
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=27.73 E-value=50 Score=24.42 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=34.2
Q ss_pred cCCccCCHHHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccC
Q 017099 74 EHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETF 129 (377)
Q Consensus 74 ~~g~i~~~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~ 129 (377)
..|.+.|+..++.+++.+. +.| ++..+.-.+++. ...-|.+++++++.+
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l 90 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRL 90 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHH
Confidence 4788999999999988865 333 355555555553 446688888888765
No 127
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=26.13 E-value=1e+02 Score=27.69 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCC
Q 017099 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|=+++|. .+++||+|+.....+.++++.+++++-+.||-.
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 345566566662 468999999998889999999999988777643
No 128
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=25.87 E-value=50 Score=29.18 Aligned_cols=19 Identities=42% Similarity=0.316 Sum_probs=15.9
Q ss_pred cEEEeCCCCceEEeeeCCC
Q 017099 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~~~ 27 (377)
.++||+||+.+|+....++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4799999999999887644
No 129
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=25.79 E-value=1.1e+02 Score=27.62 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 34455555555 257899999999888999999999998887764
No 130
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=25.48 E-value=75 Score=29.88 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=45.0
Q ss_pred hhHHHHHHHhcCCHHHHHhhhcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEE-EECCCCCccccchhhHHhhcc
Q 017099 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIK-VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~-v~~~~~~~~~~w~Gasi~a~l 351 (377)
|.+-...+|..|+ ++.+.....|+.||.+.-.-++.+|............+.. -..+++..+-+|.|--++-+.
T Consensus 288 i~~Kt~~ai~~~~--l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiMIaw~Gie~l~~~ 362 (405)
T KOG2707|consen 288 ISSKTHRAIKSLL--LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIMIAWTGIEMLRNG 362 (405)
T ss_pred HHHHHHHHHHHhh--hcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchhhhhHHHHHHhcc
Confidence 3344445555555 4455556689999999998888888876665544322200 011234566789997776544
No 131
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=25.35 E-value=93 Score=30.65 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=32.0
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||.|+-+-+.+.+..-+. .++.+.. ...++-.||+++|..
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~g------~pv~~~~---~~e~~a~GaA~~a~~ 437 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIFG------TPVDVPE---GEEGPALGAAILAAW 437 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHhC------CceeecC---CCcchHHHHHHHHHH
Confidence 4679999999999877666555542 2444332 234678999999865
No 132
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=25.31 E-value=1.1e+02 Score=27.03 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=32.9
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 75 v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 75 VLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 4455555555 357899999998888999999999888877764
No 133
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=25.13 E-value=64 Score=29.85 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.8
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHhh
Q 017099 296 YGNIVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~el~~ 321 (377)
.++|+++||.+.-.-+.++|.+.+..
T Consensus 259 ~~~vvlsGGVa~N~~L~~~l~~~~~~ 284 (305)
T TIGR00329 259 PKELVLVGGVSANKRLREMLETLCQE 284 (305)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35899999999998888888887754
No 134
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=25.06 E-value=1.1e+02 Score=27.47 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=32.9
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 75 v~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 75 VVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 4455555555 257899999999888999999999998877653
No 135
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=24.62 E-value=1.2e+02 Score=27.23 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=33.0
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 75 v~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 75 VIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 4455555555 257899999999888999999999888877663
No 136
>PF13941 MutL: MutL protein
Probab=24.54 E-value=50 Score=32.42 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=18.0
Q ss_pred cEEEeCCCCceEEeeeC--CCCCC
Q 017099 9 PLVCDNGTGMVKAGFAG--DDAPR 30 (377)
Q Consensus 9 ~vvID~Gs~~~k~G~~~--~~~P~ 30 (377)
.+++|+||++||+-... ++.++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~ 25 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPR 25 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccE
Confidence 68999999999988776 55555
No 137
>PRK00976 hypothetical protein; Provisional
Probab=24.51 E-value=1e+02 Score=28.77 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=24.4
Q ss_pred hhcCCceEEEEeCCCCceEEEEeeCCeec
Q 017099 145 YASGRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 145 ~~~g~~~~lVVDiG~~~t~v~pv~~g~~l 173 (377)
+-++..+-+|+|+|+ .|....|.+|+++
T Consensus 144 ~~~~~~~fi~~diss-ntv~~~V~~gkIv 171 (326)
T PRK00976 144 KLFGFENFIVSDISS-NTVTLLVKDGKIV 171 (326)
T ss_pred hhcCCCcEEEEeccc-cEEEEEEECCEEE
Confidence 346889999999999 8888899999887
No 138
>PRK00976 hypothetical protein; Provisional
Probab=24.43 E-value=1.1e+02 Score=28.54 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=28.4
Q ss_pred cCeEEecCCCCCC--ChHHHHHHHHhhhCCCCceEEEECCCCCccccchhhHHhhc
Q 017099 297 GNIVLSGGSTMFP--GIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 297 ~nIvl~GG~s~i~--g~~~rl~~el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+.|+|.||.|..+ .+.+++++.+.. . + ..-.+.+.-+||+.+|.
T Consensus 265 e~IVLGGGVS~~~e~~L~~~I~e~l~~------~--~--a~LG~dAGaiGAA~iA~ 310 (326)
T PRK00976 265 DNVVLAGSVGEMDEPDVSERIKELLDK------K--V--LVLGKESAAIGLALIAR 310 (326)
T ss_pred CEEEEcCccccCchhHHHHHHHHHhcc------c--c--cccCCchHHHHHHHHHH
Confidence 4699999999998 455555555532 1 1 11124778888888774
No 139
>PRK13321 pantothenate kinase; Reviewed
Probab=24.41 E-value=2.2e+02 Score=25.51 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=31.5
Q ss_pred EEEeCCCCceEEEEeeCCeecCCceEEE--cccHHHHHHHHHHHHHhcC
Q 017099 153 IVLDSGDGVSHTVPIYEGYALPHAILRL--DLAGRDLTDALMKILTERG 199 (377)
Q Consensus 153 lVVDiG~~~t~v~pv~~g~~l~~~~~~~--~~GG~~l~~~l~~~l~~~~ 199 (377)
+.||+|.+.+.+..+-++..+....... .-+.+.+...+.+++.+.+
T Consensus 3 L~IDIGnT~ik~gl~~~~~i~~~~~~~T~~~~~~~~~~~~l~~l~~~~~ 51 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGDRLLRSFRLPTDKSRTSDELGILLLSLFRHAG 51 (256)
T ss_pred EEEEECCCeEEEEEEECCEEEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999998777665553222212 2356777777888776543
No 140
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=24.40 E-value=1.1e+02 Score=27.43 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|=+++| ..+++||+|+.....+..++..+++++-|.||-
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34555555555 267899999999888999999999988877764
No 141
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=24.19 E-value=1.2e+02 Score=26.70 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=32.6
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++|. .+++||+|+.....+.++++.+++++-+.||-
T Consensus 75 v~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 75 VIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 34555555552 57899999998888999999999888776653
No 142
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=24.00 E-value=1.2e+02 Score=27.41 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=32.8
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++| ..+++||+|+.....+.++++.+++++-|.||-
T Consensus 75 v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 75 VVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 3455555555 257899999998888999999999988877663
No 143
>PLN02666 5-oxoprolinase
Probab=23.87 E-value=75 Score=35.64 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.1
Q ss_pred ceEEEEeCCCCceEEEEeeCCe
Q 017099 150 TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~pv~~g~ 171 (377)
.+.+++|+|+++|+|+.| +|.
T Consensus 314 ~~~I~~DmGGTTtDv~li-~g~ 334 (1275)
T PLN02666 314 KPVIGFDMGGTSTDVSRY-DGS 334 (1275)
T ss_pred CCEEEEecCCceeeeEEE-cCc
Confidence 468999999999999988 554
No 144
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=23.65 E-value=1.2e+02 Score=26.81 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=32.6
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 75 v~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 75 VCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 4455555555 256899999988888999999988888777764
No 145
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=23.58 E-value=1.2e+02 Score=27.28 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=33.1
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 75 v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 75 VLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 4455555555 257899999998888999999999998877764
No 146
>PRK14878 UGMP family protein; Provisional
Probab=23.51 E-value=72 Score=29.79 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=22.6
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHhh
Q 017099 296 YGNIVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~el~~ 321 (377)
.++|+++||.+.-.-+.+++.+.+..
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~ 267 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAED 267 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999888765
No 147
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=23.50 E-value=1.2e+02 Score=27.34 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|=+++| ..+++||+|+.....+.++++.+++++-|.||-
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34455555555 256899999999888999999999988877764
No 148
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=23.12 E-value=1.3e+02 Score=27.17 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=33.0
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 77 v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 77 VIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred HHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 3455545555 257899999999888999999999998877664
No 149
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=22.58 E-value=1.3e+02 Score=27.54 Aligned_cols=91 Identities=21% Similarity=0.231 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcccccccCCCC--CcEEEEeCCCCCHHHHHHHHhhhcccCC--CCeEEeechhhhhhhhc--CCceEEEE
Q 017099 82 DDMEKIWHHTFYNELRVAPEE--HPILLTEAPLNPKANREKMTQIMFETFN--APAMYVAIQAVLSLYAS--GRTTGIVL 155 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~--~~vvl~~p~~~~~~~~~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~--g~~~~lVV 155 (377)
+.+++.++.++ .+-+.+.+. +.+.|..+-...+...+.+.+.+-..|. ...+++..++.+++++. |...|+|+
T Consensus 47 ~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 46777778876 555555544 6788887777777777777777766554 23577778887777765 45899999
Q ss_pred eCCCCceEEEEeeCCeec
Q 017099 156 DSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 156 DiG~~~t~v~pv~~g~~l 173 (377)
=-|.++.+-...-||..-
T Consensus 126 iaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred EecCCceeEEECCCCCcc
Confidence 999998888777787543
No 150
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=22.25 E-value=1.4e+02 Score=26.85 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|=+++| ..+++||+|+.....+.++++.+++++-|.||-
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 34455555555 257899999998888999999999988777653
No 151
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=22.08 E-value=1.4e+02 Score=32.40 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcccCCCCeEEeechhhhhhhhcCCceEEEEeCCCCceEEEEeeCC
Q 017099 116 ANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 170 (377)
Q Consensus 116 ~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~g 170 (377)
..--.+++++-+.+.+|.|.++....-. ...-..--+|+|+|.+.|+=+.|.|-
T Consensus 216 AhYLnlL~~L~~~~~~P~ikl~~~~~~~-~~~~i~VDLVLDVGNSrTCGILIEdh 269 (1002)
T PF07520_consen 216 AHYLNLLDLLGQQLQVPEIKLVDNTLDD-IVPPIDVDLVLDVGNSRTCGILIEDH 269 (1002)
T ss_pred HHHHHHHHHHHhccCCceEEEecCCccc-cCCccceeEEEecCCcceeeEEEecC
Confidence 3334567777788999999998876655 33445778999999999987777553
No 152
>PRK13317 pantothenate kinase; Provisional
Probab=22.02 E-value=76 Score=28.94 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=25.8
Q ss_pred CCceEEEEeCCCCceEEEEeeCCeecCCceEEEcccHHHHHHHHHHHH
Q 017099 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKIL 195 (377)
Q Consensus 148 g~~~~lVVDiG~~~t~v~pv~~g~~l~~~~~~~~~GG~~l~~~l~~~l 195 (377)
.....+++++|.+.. +.-+.++ ......-+.+||-.+.. |.++|
T Consensus 94 ~~~~~~i~~iG~g~s-i~~~~g~--~~~r~~Gt~iGGgt~~g-L~~lL 137 (277)
T PRK13317 94 DLNDYIFTNIGTGTS-IHYVDGN--SQRRVGGTGIGGGTIQG-LSKLL 137 (277)
T ss_pred CCCcEEEEEecCceE-EEEEeCC--ceEEEccccccHHHHHH-HHHHH
Confidence 556778888888855 6666555 22234455788854433 33344
No 153
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=21.40 E-value=6.6e+02 Score=23.26 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=45.4
Q ss_pred hhHHHHHHHhcCCHHHHHhhhcCeEEecCC-CCCCChHHHHHHHHhhh-CCCCceEEEECCCCCccccchhhHHhhcc
Q 017099 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGS-TMFPGIADRMSKEISAL-APSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~-s~i~g~~~rl~~el~~~-~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|...|..++.+++.+.++---=.|+.+||. .....+.+-+..+|+.. .- .++....+ ..++..||+++|.-
T Consensus 244 Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f--~~~~l~~~---k~ssAvgAA~laa~ 316 (336)
T KOG1794|consen 244 LGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGF--ERVELYRP---KESSAVGAAILAAS 316 (336)
T ss_pred HHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCc--cceEEEee---cccchHHHHHHhhh
Confidence 667888888899877776322259999997 44555555555666542 11 13444443 46678888888653
No 154
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=21.30 E-value=4.2e+02 Score=25.70 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.7
Q ss_pred hcCeEEecCCC-CCCChHHHHHHHHhhh
Q 017099 296 YGNIVLSGGST-MFPGIADRMSKEISAL 322 (377)
Q Consensus 296 ~~nIvl~GG~s-~i~g~~~rl~~el~~~ 322 (377)
++-||+|||.. +=+-+++++.+.|.-+
T Consensus 324 vDaiVfTGGIgE~s~~lr~~I~~~l~~l 351 (402)
T PRK00180 324 LDAIVFTAGIGENSALVREKVLEGLEFL 351 (402)
T ss_pred CCEEEEcCccccCCHHHHHHHHhhhhhc
Confidence 57899999998 8888999998888543
No 155
>PRK13333 pantothenate kinase; Reviewed
Probab=21.23 E-value=1.1e+02 Score=26.54 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=18.0
Q ss_pred hhhhhhcCCceEEEEeCCCCceEEEEeeCCe
Q 017099 141 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 141 ~~a~~~~g~~~~lVVDiG~~~t~v~pv~~g~ 171 (377)
.+++++. ..++|||+|...| +-.+.+|.
T Consensus 77 ~~a~~aa--~~~lVIDaGTAiT-iDvv~~g~ 104 (206)
T PRK13333 77 IAACYAI--EDGVVVDAGSAIT-VDIMSNGI 104 (206)
T ss_pred HHHhccC--CCeEEEEcCCceE-EEEEcCCc
Confidence 3445543 5799999998865 44445553
No 156
>PRK13318 pantothenate kinase; Reviewed
Probab=21.23 E-value=2.4e+02 Score=25.19 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=31.0
Q ss_pred EEEeCCCCceEEEEeeCCeecCCceEEE--cccHHHHHHHHHHHHHhcC
Q 017099 153 IVLDSGDGVSHTVPIYEGYALPHAILRL--DLAGRDLTDALMKILTERG 199 (377)
Q Consensus 153 lVVDiG~~~t~v~pv~~g~~l~~~~~~~--~~GG~~l~~~l~~~l~~~~ 199 (377)
+.||+|.+.+.+..+-+|..+.+..... .-+..++...+.+++...+
T Consensus 3 L~IDIGnT~iK~al~d~g~i~~~~~~~t~~~~~~~~~~~~l~~l~~~~~ 51 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEGGKLVAHWRISTDSRRTADEYGVWLKQLLGLSG 51 (258)
T ss_pred EEEEECCCcEEEEEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999888777664322211 1245666666777665443
No 157
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=21.14 E-value=1.5e+02 Score=26.16 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCCC
Q 017099 82 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|=+++|. .+++||+|+.....+.++++.+++++-+.||-.
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (226)
T cd08558 74 DVIEAIKEYAFV------TSPYPVILSLENHCSLEQQKKMAQILKEIFGDK 118 (226)
T ss_pred HHHHHHHHHhcc------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 345555555552 468999999988889999999888887777643
No 158
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=20.97 E-value=1.4e+02 Score=26.91 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=32.8
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEEeCCCCCHHHHHHHHhhhcccCCC
Q 017099 83 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 75 v~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 75 VIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 4455555555 256899999998888999999999888777764
No 159
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=20.94 E-value=89 Score=29.12 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.0
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHhh
Q 017099 296 YGNIVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~el~~ 321 (377)
..+|+|+||.+.-.-+.++|.+.+..
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~ 268 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAED 268 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 35899999999999888888887755
No 160
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=20.76 E-value=54 Score=30.09 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCCcEEEeCCCCceEEeeeCCCCCCC
Q 017099 5 EDIQPLVCDNGTGMVKAGFAGDDAPRA 31 (377)
Q Consensus 5 ~~~~~vvID~Gs~~~k~G~~~~~~P~~ 31 (377)
...+.|++|+|+++|.++.-.+-.|..
T Consensus 75 g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 75 GLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp T-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred CCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 346789999999999999998888863
No 161
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=20.33 E-value=57 Score=27.48 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=25.5
Q ss_pred CCCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceEEee
Q 017099 3 DTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP 40 (377)
Q Consensus 3 ~~~~~~~vvID~Gs~~~k~G~~~~~~P~~~~ps~~~~~ 40 (377)
++++.-.+|||+|. +.|+|.. |+..||+.--.|
T Consensus 59 PdeEi~~vVIDCGG-TlRCGiY----PkK~IpTINi~p 91 (183)
T PF03612_consen 59 PDEEIACVVIDCGG-TLRCGIY----PKKRIPTINIHP 91 (183)
T ss_pred ChHHeEEEEEecCC-ceeeccc----cccCCceeeeee
Confidence 46777889999996 6899876 888888864433
Done!