Query 017100
Match_columns 377
No_of_seqs 447 out of 3945
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09563 rbgA GTPase YlqF; Rev 100.0 1E-55 2.2E-60 422.1 31.3 275 99-376 3-283 (287)
2 TIGR03596 GTPase_YlqF ribosome 100.0 1.5E-54 3.2E-59 412.1 30.9 270 100-372 1-276 (276)
3 COG1161 Predicted GTPases [Gen 100.0 4.5E-47 9.8E-52 367.0 24.7 278 98-376 12-300 (322)
4 KOG2484 GTPase [General functi 100.0 1.2E-45 2.7E-50 351.4 20.3 276 88-375 113-405 (435)
5 KOG2485 Conserved ATP/GTP bind 100.0 5E-41 1.1E-45 311.9 23.6 278 90-373 16-322 (335)
6 KOG2423 Nucleolar GTPase [Gene 100.0 2.7E-40 6E-45 313.2 18.4 253 105-376 198-461 (572)
7 KOG1424 Predicted GTP-binding 100.0 3.1E-40 6.6E-45 322.9 19.0 302 63-376 110-477 (562)
8 COG2262 HflX GTPases [General 100.0 3.2E-40 6.9E-45 317.6 3.3 309 42-375 19-368 (411)
9 cd01856 YlqF YlqF. Proteins o 100.0 1.4E-32 3E-37 243.3 19.1 171 102-273 1-171 (171)
10 TIGR03156 GTP_HflX GTP-binding 100.0 1.4E-32 3.1E-37 268.9 8.3 218 43-285 17-260 (351)
11 PRK11058 GTPase HflX; Provisio 100.0 2.7E-32 5.8E-37 272.9 6.5 218 43-285 25-268 (426)
12 cd01858 NGP_1 NGP-1. Autoanti 100.0 2.3E-29 5.1E-34 219.5 15.9 151 114-272 2-157 (157)
13 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 9E-28 2E-32 205.9 16.1 136 111-275 2-141 (141)
14 cd04178 Nucleostemin_like Nucl 100.0 1.2E-27 2.5E-32 211.8 16.0 143 122-272 1-172 (172)
15 cd01849 YlqF_related_GTPase Yl 99.9 4.2E-27 9.2E-32 204.8 16.2 151 122-272 1-155 (155)
16 cd01859 MJ1464 MJ1464. This f 99.9 8.6E-25 1.9E-29 190.2 16.9 149 114-272 6-156 (156)
17 cd01855 YqeH YqeH. YqeH is an 99.9 2.8E-25 6.1E-30 199.6 14.2 150 110-272 24-190 (190)
18 COG1160 Predicted GTPases [Gen 99.9 1.9E-24 4.2E-29 211.5 16.4 164 107-275 70-239 (444)
19 PRK12289 GTPase RsgA; Reviewed 99.9 8.7E-24 1.9E-28 206.3 14.9 144 116-278 85-240 (352)
20 PRK13796 GTPase YqeH; Provisio 99.9 1.7E-23 3.6E-28 206.3 16.0 147 115-275 63-223 (365)
21 TIGR03597 GTPase_YqeH ribosome 99.9 1.6E-23 3.5E-28 206.0 15.5 154 108-275 51-217 (360)
22 TIGR00157 ribosome small subun 99.9 4.8E-23 1E-27 192.5 12.5 144 116-279 32-188 (245)
23 PRK12288 GTPase RsgA; Reviewed 99.9 2.8E-21 6E-26 188.6 14.1 142 117-278 117-273 (347)
24 PRK00098 GTPase RsgA; Reviewed 99.8 1E-20 2.2E-25 181.8 12.8 143 116-277 76-231 (298)
25 cd01854 YjeQ_engC YjeQ/EngC. 99.8 2.2E-20 4.9E-25 178.5 13.1 142 116-276 74-227 (287)
26 PRK03003 GTP-binding protein D 99.8 1.9E-19 4.1E-24 183.5 17.2 181 87-274 85-271 (472)
27 PRK00093 GTP-binding protein D 99.8 3.3E-19 7.2E-24 180.0 17.9 182 86-276 47-235 (435)
28 KOG0410 Predicted GTP binding 99.8 1.7E-21 3.7E-26 182.0 0.3 247 44-314 7-287 (410)
29 TIGR03594 GTPase_EngA ribosome 99.8 5E-19 1.1E-23 178.3 17.5 181 87-275 46-233 (429)
30 PRK09518 bifunctional cytidyla 99.8 1.6E-18 3.6E-23 184.6 17.6 184 87-275 322-511 (712)
31 COG1162 Predicted GTPases [Gen 99.8 1.4E-18 3E-23 163.6 13.4 142 117-277 76-231 (301)
32 PF13167 GTP-bdg_N: GTP-bindin 99.7 4.8E-19 1E-23 139.8 1.2 82 42-128 7-94 (95)
33 PRK01889 GTPase RsgA; Reviewed 99.7 9.1E-17 2E-21 157.9 11.0 146 118-283 110-268 (356)
34 PF03193 DUF258: Protein of un 99.6 3.2E-15 7E-20 129.9 7.0 95 166-278 2-103 (161)
35 PF02421 FeoB_N: Ferrous iron 99.5 5.1E-14 1.1E-18 122.1 5.8 62 218-280 1-65 (156)
36 COG1159 Era GTPase [General fu 99.5 6.1E-14 1.3E-18 131.2 6.3 65 219-284 8-75 (298)
37 COG1084 Predicted GTPase [Gene 99.5 1.2E-13 2.6E-18 130.5 7.8 66 213-279 164-232 (346)
38 COG0486 ThdF Predicted GTPase 99.4 1.2E-13 2.7E-18 136.2 6.5 60 215-274 215-277 (454)
39 COG1160 Predicted GTPases [Gen 99.4 3.5E-13 7.6E-18 132.7 5.1 59 218-276 4-65 (444)
40 PF01926 MMR_HSR1: 50S ribosom 99.4 6.5E-13 1.4E-17 109.5 5.1 58 219-276 1-61 (116)
41 COG0218 Predicted GTPase [Gene 99.3 1.1E-12 2.3E-17 116.8 5.9 60 217-276 24-84 (200)
42 KOG1191 Mitochondrial GTPase [ 99.3 3E-12 6.6E-17 126.3 6.2 59 216-274 267-328 (531)
43 TIGR00436 era GTP-binding prot 99.2 2.3E-11 5.1E-16 115.4 5.3 57 219-275 2-61 (270)
44 PRK12298 obgE GTPase CgtA; Rev 99.2 2.4E-11 5.1E-16 120.8 4.9 57 219-276 161-221 (390)
45 PTZ00258 GTP-binding protein; 99.2 3.5E-11 7.6E-16 118.8 5.6 59 216-275 20-98 (390)
46 PRK05291 trmE tRNA modificatio 99.1 5.1E-11 1.1E-15 120.8 6.4 59 216-274 214-275 (449)
47 PRK09601 GTP-binding protein Y 99.1 4.8E-11 1E-15 116.6 4.9 57 218-275 3-79 (364)
48 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 1.1E-10 2.4E-15 105.3 6.4 58 219-276 2-63 (196)
49 cd01900 YchF YchF subfamily. 99.1 4.7E-11 1E-15 113.0 4.1 56 220-276 1-76 (274)
50 KOG1423 Ras-like GTPase ERA [C 99.1 1.2E-10 2.5E-15 109.1 6.1 62 216-277 71-135 (379)
51 COG1163 DRG Predicted GTPase [ 99.1 2E-10 4.3E-15 108.5 6.8 59 217-276 63-124 (365)
52 KOG1489 Predicted GTP-binding 99.0 1.4E-10 3.1E-15 109.1 4.6 127 219-347 198-341 (366)
53 cd01853 Toc34_like Toc34-like 99.0 2.2E-10 4.8E-15 107.3 5.8 61 215-275 29-92 (249)
54 TIGR00450 mnmE_trmE_thdF tRNA 99.0 3.3E-10 7.2E-15 114.5 6.5 60 215-274 201-263 (442)
55 TIGR03598 GTPase_YsxC ribosome 99.0 4.9E-10 1.1E-14 99.5 6.0 59 217-275 18-77 (179)
56 PRK00454 engB GTP-binding prot 99.0 4.9E-10 1.1E-14 100.3 5.9 59 216-274 23-82 (196)
57 PRK12299 obgE GTPase CgtA; Rev 99.0 3.2E-10 6.9E-15 110.7 4.9 57 218-275 159-219 (335)
58 PRK12296 obgE GTPase CgtA; Rev 99.0 3.3E-10 7.1E-15 115.2 4.9 57 218-275 160-219 (500)
59 COG0536 Obg Predicted GTPase [ 99.0 6.9E-10 1.5E-14 105.7 6.2 57 219-276 161-221 (369)
60 PRK12297 obgE GTPase CgtA; Rev 99.0 4.7E-10 1E-14 112.4 5.1 55 219-274 160-218 (424)
61 COG0370 FeoB Fe2+ transport sy 99.0 3.9E-09 8.5E-14 108.8 11.2 59 218-277 4-65 (653)
62 PRK15494 era GTPase Era; Provi 98.9 1.4E-09 3E-14 106.5 7.2 59 217-275 52-113 (339)
63 cd01878 HflX HflX subfamily. 98.9 1.9E-09 4.1E-14 97.5 7.4 59 216-275 40-102 (204)
64 TIGR03594 GTPase_EngA ribosome 98.9 6.3E-10 1.4E-14 112.2 4.6 56 219-274 1-59 (429)
65 PRK04213 GTP-binding protein; 98.9 9E-10 2E-14 99.3 5.2 54 217-272 9-62 (201)
66 PRK00089 era GTPase Era; Revie 98.9 9.4E-10 2E-14 105.4 5.2 58 219-276 7-67 (292)
67 TIGR00991 3a0901s02IAP34 GTP-b 98.9 1.6E-09 3.5E-14 103.6 6.5 60 216-275 37-99 (313)
68 KOG1490 GTP-binding protein CR 98.9 1.2E-09 2.7E-14 108.1 4.7 67 214-281 165-234 (620)
69 TIGR02729 Obg_CgtA Obg family 98.9 1.3E-09 2.9E-14 106.1 4.6 57 218-275 158-218 (329)
70 cd01898 Obg Obg subfamily. Th 98.9 1.6E-09 3.4E-14 94.5 3.9 55 219-274 2-60 (170)
71 PRK03003 GTP-binding protein D 98.9 2.7E-09 5.8E-14 109.1 6.0 57 217-273 38-97 (472)
72 PRK09602 translation-associate 98.9 2.1E-09 4.6E-14 107.1 5.0 57 218-275 2-85 (396)
73 cd01897 NOG NOG1 is a nucleola 98.8 3.3E-09 7.2E-14 92.3 4.8 55 219-274 2-59 (168)
74 cd04164 trmE TrmE (MnmE, ThdF, 98.8 4.6E-09 1E-13 89.7 5.3 58 218-275 2-62 (157)
75 PRK00093 GTP-binding protein D 98.8 3.9E-09 8.4E-14 106.8 5.0 57 218-274 2-61 (435)
76 cd01894 EngA1 EngA1 subfamily. 98.8 3.9E-09 8.4E-14 90.3 3.9 55 221-275 1-58 (157)
77 PRK09518 bifunctional cytidyla 98.8 5.6E-09 1.2E-13 111.8 5.7 57 218-274 276-335 (712)
78 TIGR00993 3a0901s04IAP86 chlor 98.8 1.2E-08 2.7E-13 105.2 7.7 62 216-277 117-181 (763)
79 cd01895 EngA2 EngA2 subfamily. 98.8 6.7E-09 1.5E-13 90.0 4.9 59 217-275 2-63 (174)
80 COG0012 Predicted GTPase, prob 98.8 4.8E-09 1E-13 101.6 4.0 58 217-275 2-80 (372)
81 cd01879 FeoB Ferrous iron tran 98.8 4E-09 8.6E-14 90.6 3.1 53 222-275 1-56 (158)
82 cd01896 DRG The developmentall 98.8 7.4E-09 1.6E-13 96.2 4.9 56 219-275 2-60 (233)
83 PRK09554 feoB ferrous iron tra 98.8 8.6E-09 1.9E-13 110.6 5.8 56 218-274 4-62 (772)
84 cd04163 Era Era subfamily. Er 98.7 1.6E-08 3.6E-13 86.6 5.8 59 217-275 3-64 (168)
85 KOG1491 Predicted GTP-binding 98.7 9E-09 1.9E-13 97.9 4.3 62 214-276 17-98 (391)
86 cd01899 Ygr210 Ygr210 subfamil 98.7 8.4E-09 1.8E-13 99.9 4.1 55 220-275 1-82 (318)
87 cd01876 YihA_EngB The YihA (En 98.7 1.4E-08 3.1E-13 87.3 5.2 55 220-274 2-57 (170)
88 cd01881 Obg_like The Obg-like 98.7 7.4E-09 1.6E-13 90.5 3.1 52 222-274 1-56 (176)
89 PF04548 AIG1: AIG1 family; I 98.7 2.1E-08 4.7E-13 91.7 5.1 62 218-279 1-66 (212)
90 KOG1249 Predicted GTPases [Gen 98.7 5.2E-08 1.1E-12 97.5 8.0 83 218-300 310-403 (572)
91 cd04171 SelB SelB subfamily. 98.7 2.8E-08 6.1E-13 85.7 5.0 55 219-273 2-62 (164)
92 PRK15467 ethanolamine utilizat 98.6 2.6E-07 5.6E-12 80.5 10.3 94 109-203 53-148 (158)
93 PF00009 GTP_EFTU: Elongation 98.6 1.5E-07 3.3E-12 84.2 9.1 97 104-201 78-186 (188)
94 cd04171 SelB SelB subfamily. 98.6 2.1E-07 4.5E-12 80.2 9.0 104 87-199 50-163 (164)
95 TIGR00231 small_GTP small GTP- 98.6 8.5E-08 1.8E-12 81.0 5.7 55 218-273 2-61 (161)
96 cd01851 GBP Guanylate-binding 98.6 1E-07 2.3E-12 88.0 6.6 61 218-278 8-76 (224)
97 TIGR02528 EutP ethanolamine ut 98.6 5.5E-07 1.2E-11 76.2 10.6 84 113-197 55-140 (142)
98 TIGR00092 GTP-binding protein 98.6 6.3E-08 1.4E-12 95.0 5.2 58 218-275 3-80 (368)
99 cd04166 CysN_ATPS CysN_ATPS su 98.6 3.1E-08 6.7E-13 90.3 2.6 55 219-273 1-88 (208)
100 cd01887 IF2_eIF5B IF2/eIF5B (i 98.5 7.6E-08 1.6E-12 83.5 4.6 54 219-273 2-61 (168)
101 cd04165 GTPBP1_like GTPBP1-lik 98.5 4.7E-07 1E-11 83.6 10.1 96 104-200 92-221 (224)
102 cd01894 EngA1 EngA1 subfamily. 98.5 1.5E-06 3.3E-11 74.1 12.6 109 86-198 43-154 (157)
103 PF10662 PduV-EutP: Ethanolami 98.5 1E-06 2.2E-11 75.2 10.5 91 108-199 51-143 (143)
104 cd01890 LepA LepA subfamily. 98.5 1.7E-06 3.6E-11 76.1 11.9 105 86-199 65-174 (179)
105 COG3596 Predicted GTPase [Gene 98.5 7.4E-08 1.6E-12 89.6 2.6 63 216-279 38-104 (296)
106 TIGR03156 GTP_HflX GTP-binding 98.4 2E-06 4.3E-11 84.7 12.4 108 87-199 236-349 (351)
107 cd01861 Rab6 Rab6 subfamily. 98.4 1.9E-07 4.2E-12 80.5 4.7 53 219-272 2-59 (161)
108 cd01888 eIF2_gamma eIF2-gamma 98.4 1.5E-06 3.2E-11 78.9 10.5 104 88-200 83-197 (203)
109 TIGR00436 era GTP-binding prot 98.4 4E-06 8.7E-11 79.5 13.7 92 111-203 70-165 (270)
110 cd04104 p47_IIGP_like p47 (47- 98.4 2E-07 4.3E-12 84.2 4.3 58 218-275 2-65 (197)
111 cd01895 EngA2 EngA2 subfamily. 98.4 4.9E-06 1.1E-10 71.9 12.8 85 115-199 79-172 (174)
112 cd01889 SelB_euk SelB subfamil 98.4 6.3E-06 1.4E-10 73.8 12.8 107 85-200 65-184 (192)
113 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.4 3E-06 6.4E-11 75.0 9.9 120 82-203 51-186 (221)
114 PRK09866 hypothetical protein; 98.4 4.9E-06 1.1E-10 86.1 12.9 109 87-199 229-350 (741)
115 TIGR00437 feoB ferrous iron tr 98.4 5.6E-07 1.2E-11 94.3 6.2 51 224-275 1-54 (591)
116 PRK09866 hypothetical protein; 98.4 5.8E-07 1.3E-11 92.9 6.1 76 192-274 50-129 (741)
117 cd04163 Era Era subfamily. Er 98.3 9.5E-06 2.1E-10 69.3 12.7 111 86-199 49-166 (168)
118 cd01889 SelB_euk SelB subfamil 98.3 3E-07 6.4E-12 82.5 3.3 56 218-273 1-79 (192)
119 cd01863 Rab18 Rab18 subfamily. 98.3 7.5E-07 1.6E-11 76.8 5.6 56 218-273 1-60 (161)
120 cd04124 RabL2 RabL2 subfamily. 98.3 2E-06 4.3E-11 74.7 8.2 104 86-199 47-155 (161)
121 COG1159 Era GTPase [General fu 98.3 4E-06 8.7E-11 79.1 10.7 96 109-204 74-174 (298)
122 cd00881 GTP_translation_factor 98.3 3.5E-07 7.5E-12 80.7 3.4 55 219-273 1-73 (189)
123 cd00154 Rab Rab family. Rab G 98.3 5.3E-07 1.2E-11 76.6 4.3 56 218-273 1-60 (159)
124 cd01898 Obg Obg subfamily. Th 98.3 2.8E-06 6E-11 73.9 8.9 110 88-199 48-168 (170)
125 cd00881 GTP_translation_factor 98.3 8E-06 1.7E-10 71.9 12.0 104 87-199 61-184 (189)
126 PLN03118 Rab family protein; P 98.3 7.9E-07 1.7E-11 81.0 5.7 57 217-273 14-73 (211)
127 PTZ00327 eukaryotic translatio 98.3 4.2E-06 9E-11 85.1 11.3 96 104-200 125-231 (460)
128 cd00880 Era_like Era (E. coli 98.3 5E-07 1.1E-11 76.2 4.0 55 222-276 1-59 (163)
129 cd01860 Rab5_related Rab5-rela 98.3 9.2E-07 2E-11 76.3 5.7 55 218-272 2-60 (163)
130 TIGR02836 spore_IV_A stage IV 98.3 5E-07 1.1E-11 89.0 4.2 60 216-275 16-104 (492)
131 PRK12296 obgE GTPase CgtA; Rev 98.3 6.4E-06 1.4E-10 84.1 12.4 113 86-202 204-340 (500)
132 cd01866 Rab2 Rab2 subfamily. 98.3 1.1E-06 2.3E-11 76.9 5.9 55 218-272 5-63 (168)
133 PRK15467 ethanolamine utilizat 98.3 4E-07 8.6E-12 79.4 3.1 48 219-275 3-50 (158)
134 cd01868 Rab11_like Rab11-like. 98.3 1.1E-06 2.5E-11 76.1 5.7 55 218-273 4-63 (165)
135 cd04154 Arl2 Arl2 subfamily. 98.3 8.9E-07 1.9E-11 77.8 5.1 55 217-273 14-69 (173)
136 cd01878 HflX HflX subfamily. 98.3 1.1E-05 2.5E-10 72.7 12.4 106 89-198 90-201 (204)
137 PTZ00099 rab6; Provisional 98.3 3.6E-06 7.9E-11 74.7 8.9 107 85-200 26-140 (176)
138 TIGR02729 Obg_CgtA Obg family 98.3 2.5E-06 5.5E-11 83.2 8.5 109 88-199 205-326 (329)
139 COG0486 ThdF Predicted GTPase 98.3 2.8E-06 6E-11 84.6 8.6 115 82-202 259-376 (454)
140 PRK00089 era GTPase Era; Revie 98.3 1.9E-05 4.1E-10 75.6 14.2 114 86-202 51-171 (292)
141 cd01850 CDC_Septin CDC/Septin. 98.3 1.2E-06 2.6E-11 83.4 5.7 58 217-274 4-75 (276)
142 cd04155 Arl3 Arl3 subfamily. 98.3 1.1E-06 2.4E-11 76.7 5.0 56 217-273 14-69 (173)
143 PRK15494 era GTPase Era; Provi 98.3 1.2E-05 2.5E-10 79.0 12.6 116 86-203 98-217 (339)
144 cd04160 Arfrp1 Arfrp1 subfamil 98.2 8.1E-07 1.7E-11 77.1 3.7 55 219-273 1-61 (167)
145 cd04101 RabL4 RabL4 (Rab-like4 98.2 4.4E-06 9.6E-11 72.2 8.3 102 87-199 51-161 (164)
146 cd01879 FeoB Ferrous iron tran 98.2 7.8E-06 1.7E-10 69.9 9.5 80 119-200 73-155 (158)
147 cd04154 Arl2 Arl2 subfamily. 98.2 4.5E-06 9.8E-11 73.3 8.0 102 87-197 57-170 (173)
148 PRK12299 obgE GTPase CgtA; Rev 98.2 4.9E-06 1.1E-10 81.4 8.9 110 88-201 206-327 (335)
149 cd04108 Rab36_Rab34 Rab34/Rab3 98.2 5.1E-06 1.1E-10 73.0 8.3 105 88-201 49-164 (170)
150 cd04156 ARLTS1 ARLTS1 subfamil 98.2 1.4E-06 3E-11 75.1 4.5 53 219-273 1-55 (160)
151 cd01891 TypA_BipA TypA (tyrosi 98.2 9.3E-06 2E-10 72.8 10.0 100 87-195 64-175 (194)
152 cd00880 Era_like Era (E. coli 98.2 2.1E-05 4.5E-10 66.2 11.6 111 87-199 44-161 (163)
153 PRK12317 elongation factor 1-a 98.2 1.1E-06 2.4E-11 88.8 4.2 58 216-273 5-95 (425)
154 cd04164 trmE TrmE (MnmE, ThdF, 98.2 7E-06 1.5E-10 69.8 8.7 107 87-200 48-155 (157)
155 KOG1486 GTP-binding protein DR 98.2 2E-06 4.3E-11 79.0 5.4 58 217-275 62-122 (364)
156 cd04106 Rab23_lke Rab23-like s 98.2 5.7E-06 1.2E-10 71.2 8.1 101 87-198 50-159 (162)
157 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.2 1.9E-06 4E-11 76.0 5.1 55 217-273 15-70 (174)
158 cd01867 Rab8_Rab10_Rab13_like 98.2 2.4E-06 5.2E-11 74.5 5.7 56 217-273 3-63 (167)
159 KOG2486 Predicted GTPase [Gene 98.2 1.4E-06 3E-11 81.2 4.3 57 216-272 135-193 (320)
160 cd04157 Arl6 Arl6 subfamily. 98.2 1.6E-06 3.6E-11 74.6 4.5 54 219-273 1-56 (162)
161 cd04120 Rab12 Rab12 subfamily. 98.2 7.2E-06 1.6E-10 74.5 8.9 104 85-197 46-158 (202)
162 TIGR00475 selB selenocysteine- 98.2 1.1E-05 2.4E-10 84.5 11.5 99 104-203 58-167 (581)
163 smart00176 RAN Ran (Ras-relate 98.2 6.6E-06 1.4E-10 74.6 8.5 104 86-198 42-150 (200)
164 cd00878 Arf_Arl Arf (ADP-ribos 98.2 1.7E-06 3.7E-11 74.4 4.5 54 219-274 1-55 (158)
165 cd04156 ARLTS1 ARLTS1 subfamil 98.2 2.5E-06 5.5E-11 73.4 5.5 103 87-198 43-158 (160)
166 cd01891 TypA_BipA TypA (tyrosi 98.2 1.4E-06 2.9E-11 78.3 3.9 55 219-273 4-76 (194)
167 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.2 9.7E-06 2.1E-10 72.1 9.3 104 86-199 50-167 (183)
168 cd04149 Arf6 Arf6 subfamily. 98.2 7.1E-06 1.5E-10 72.0 8.3 103 86-197 51-165 (168)
169 smart00175 RAB Rab subfamily o 98.2 2.5E-06 5.5E-11 73.5 5.3 54 218-272 1-59 (164)
170 cd01884 EF_Tu EF-Tu subfamily. 98.2 1.7E-06 3.7E-11 78.2 4.4 56 218-273 3-76 (195)
171 COG2262 HflX GTPases [General 98.2 1.1E-05 2.4E-10 79.1 10.3 103 97-202 248-356 (411)
172 cd04151 Arl1 Arl1 subfamily. 98.2 7.5E-06 1.6E-10 70.6 8.3 102 87-197 42-155 (158)
173 cd04110 Rab35 Rab35 subfamily. 98.2 7.3E-06 1.6E-10 74.0 8.5 101 88-199 55-164 (199)
174 cd04119 RJL RJL (RabJ-Like) su 98.2 2E-06 4.3E-11 74.3 4.6 54 218-272 1-59 (168)
175 cd01887 IF2_eIF5B IF2/eIF5B (i 98.2 2.9E-05 6.3E-10 67.2 12.0 106 87-201 49-165 (168)
176 cd01890 LepA LepA subfamily. 98.2 1.2E-06 2.5E-11 77.1 3.0 56 219-274 2-79 (179)
177 cd04157 Arl6 Arl6 subfamily. 98.2 8.9E-06 1.9E-10 69.9 8.5 102 87-197 44-159 (162)
178 cd04160 Arfrp1 Arfrp1 subfamil 98.2 7.5E-06 1.6E-10 71.0 8.1 102 87-197 49-164 (167)
179 smart00178 SAR Sar1p-like memb 98.2 2.4E-06 5.2E-11 76.1 5.0 55 217-273 17-72 (184)
180 cd04122 Rab14 Rab14 subfamily. 98.2 8.8E-06 1.9E-10 70.8 8.5 100 86-196 49-158 (166)
181 cd04139 RalA_RalB RalA/RalB su 98.2 1.6E-06 3.5E-11 74.6 3.7 53 219-273 2-59 (164)
182 cd01886 EF-G Elongation factor 98.2 2.8E-06 6E-11 80.7 5.6 56 219-274 1-76 (270)
183 PRK10512 selenocysteinyl-tRNA- 98.2 1.5E-05 3.2E-10 84.0 11.6 98 104-202 59-166 (614)
184 cd01862 Rab7 Rab7 subfamily. 98.2 8E-06 1.7E-10 71.0 8.2 93 108-200 60-165 (172)
185 cd04145 M_R_Ras_like M-Ras/R-R 98.1 3.6E-06 7.7E-11 72.6 5.8 54 218-273 3-61 (164)
186 cd04119 RJL RJL (RabJ-Like) su 98.1 1.2E-05 2.6E-10 69.3 9.1 104 86-198 47-163 (168)
187 PRK05291 trmE tRNA modificatio 98.1 1.4E-05 3.1E-10 81.2 10.9 106 87-200 262-368 (449)
188 PRK13768 GTPase; Provisional 98.1 1.2E-05 2.6E-10 75.7 9.6 117 82-201 91-246 (253)
189 cd04112 Rab26 Rab26 subfamily. 98.1 1.4E-05 3.1E-10 71.4 9.7 106 87-201 49-162 (191)
190 cd01864 Rab19 Rab19 subfamily. 98.1 3.8E-06 8.1E-11 73.0 5.7 55 218-272 4-62 (165)
191 cd04113 Rab4 Rab4 subfamily. 98.1 3.2E-06 6.9E-11 72.9 5.3 55 218-273 1-60 (161)
192 CHL00071 tufA elongation facto 98.1 2.3E-06 5E-11 86.0 5.0 57 216-272 11-85 (409)
193 cd01897 NOG NOG1 is a nucleola 98.1 3.7E-05 8E-10 66.6 11.9 110 87-199 46-165 (168)
194 TIGR02528 EutP ethanolamine ut 98.1 1.8E-06 3.9E-11 73.1 3.4 44 219-272 2-45 (142)
195 cd04138 H_N_K_Ras_like H-Ras/N 98.1 2.4E-06 5.2E-11 73.2 4.3 54 218-273 2-60 (162)
196 cd04107 Rab32_Rab38 Rab38/Rab3 98.1 1.4E-05 3.1E-10 72.1 9.5 105 86-199 48-165 (201)
197 TIGR03680 eif2g_arch translati 98.1 1.8E-05 3.9E-10 79.5 11.0 104 88-200 80-194 (406)
198 cd04121 Rab40 Rab40 subfamily. 98.1 7.4E-06 1.6E-10 73.6 7.5 103 87-198 54-163 (189)
199 cd04150 Arf1_5_like Arf1-Arf5- 98.1 4.8E-06 1E-10 72.3 6.0 103 86-197 42-156 (159)
200 cd04132 Rho4_like Rho4-like su 98.1 1.7E-05 3.7E-10 70.3 9.7 105 87-200 48-165 (187)
201 cd01862 Rab7 Rab7 subfamily. 98.1 4E-06 8.8E-11 72.9 5.5 54 219-273 2-60 (172)
202 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.1 3.2E-06 7E-11 73.4 4.8 55 218-273 3-62 (166)
203 cd04137 RheB Rheb (Ras Homolog 98.1 2.4E-06 5.1E-11 75.3 3.9 54 218-273 2-60 (180)
204 cd00877 Ran Ran (Ras-related n 98.1 9.6E-06 2.1E-10 70.9 7.7 103 87-198 48-155 (166)
205 cd04127 Rab27A Rab27a subfamil 98.1 1E-05 2.2E-10 71.2 7.9 103 88-199 63-174 (180)
206 cd04118 Rab24 Rab24 subfamily. 98.1 3.9E-06 8.5E-11 74.9 5.3 55 218-273 1-61 (193)
207 cd04128 Spg1 Spg1p. Spg1p (se 98.1 8.8E-06 1.9E-10 72.5 7.5 104 86-198 47-162 (182)
208 cd01881 Obg_like The Obg-like 98.1 1.5E-05 3.3E-10 69.4 8.8 110 87-198 43-173 (176)
209 cd04159 Arl10_like Arl10-like 98.1 4.1E-06 8.9E-11 71.1 5.0 53 220-273 2-55 (159)
210 cd04106 Rab23_lke Rab23-like s 98.1 3.8E-06 8.3E-11 72.3 4.8 54 218-272 1-61 (162)
211 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.1 2.3E-05 5E-10 72.8 10.2 105 84-197 57-183 (232)
212 cd04145 M_R_Ras_like M-Ras/R-R 98.1 1.8E-05 3.9E-10 68.2 8.9 103 87-198 49-160 (164)
213 cd01893 Miro1 Miro1 subfamily. 98.1 1.7E-05 3.6E-10 69.2 8.7 105 86-199 45-161 (166)
214 cd01865 Rab3 Rab3 subfamily. 98.1 1.2E-05 2.6E-10 69.9 7.7 101 87-198 49-159 (165)
215 smart00177 ARF ARF-like small 98.1 7.4E-06 1.6E-10 72.3 6.4 104 87-199 56-171 (175)
216 cd04142 RRP22 RRP22 subfamily. 98.1 4.1E-06 9E-11 75.7 4.8 54 219-273 2-60 (198)
217 cd01865 Rab3 Rab3 subfamily. 98.1 6E-06 1.3E-10 71.8 5.7 55 218-273 2-61 (165)
218 cd04136 Rap_like Rap-like subf 98.1 3.1E-06 6.8E-11 72.9 3.8 54 218-273 2-60 (163)
219 cd01867 Rab8_Rab10_Rab13_like 98.1 1.8E-05 4E-10 68.9 8.7 100 88-198 52-161 (167)
220 cd04151 Arl1 Arl1 subfamily. 98.1 4.2E-06 9.1E-11 72.2 4.6 53 219-273 1-54 (158)
221 cd01884 EF_Tu EF-Tu subfamily. 98.1 3.9E-05 8.6E-10 69.3 11.1 87 104-191 73-172 (195)
222 cd04175 Rap1 Rap1 subgroup. T 98.1 3.6E-06 7.9E-11 72.9 4.2 54 218-273 2-60 (164)
223 KOG0092 GTPase Rab5/YPT51 and 98.1 3.7E-06 8E-11 74.3 4.2 116 74-200 38-165 (200)
224 smart00173 RAS Ras subfamily o 98.1 5.1E-06 1.1E-10 71.8 5.1 53 219-273 2-59 (164)
225 cd00879 Sar1 Sar1 subfamily. 98.1 5E-06 1.1E-10 74.0 5.1 55 217-273 19-74 (190)
226 smart00175 RAB Rab subfamily o 98.1 1.6E-05 3.4E-10 68.5 8.1 101 88-199 49-159 (164)
227 KOG0084 GTPase Rab1/YPT1, smal 98.1 1.5E-05 3.3E-10 70.6 7.9 112 80-193 36-163 (205)
228 PF05049 IIGP: Interferon-indu 98.1 1.1E-05 2.3E-10 79.5 7.6 61 216-277 34-101 (376)
229 PRK00454 engB GTP-binding prot 98.0 9.9E-05 2.1E-09 65.8 13.3 116 87-202 69-194 (196)
230 cd04149 Arf6 Arf6 subfamily. 98.0 5.6E-06 1.2E-10 72.6 5.1 55 217-273 9-64 (168)
231 cd04177 RSR1 RSR1 subgroup. R 98.0 6.5E-06 1.4E-10 71.8 5.3 54 218-273 2-60 (168)
232 cd00876 Ras Ras family. The R 98.0 3.5E-06 7.6E-11 72.1 3.5 54 219-274 1-59 (160)
233 cd04159 Arl10_like Arl10-like 98.0 1.4E-05 3.1E-10 67.7 7.4 91 108-198 55-157 (159)
234 cd04112 Rab26 Rab26 subfamily. 98.0 6.2E-06 1.3E-10 73.8 5.2 53 219-272 2-60 (191)
235 cd01893 Miro1 Miro1 subfamily. 98.0 3.9E-06 8.5E-11 73.1 3.8 53 219-273 2-58 (166)
236 PLN00223 ADP-ribosylation fact 98.0 1.1E-05 2.4E-10 71.8 6.7 104 86-198 59-174 (181)
237 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.0 1.3E-05 2.7E-10 69.6 7.0 100 88-198 51-160 (166)
238 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.0 7.1E-06 1.5E-10 73.0 5.5 54 217-272 3-62 (183)
239 cd00878 Arf_Arl Arf (ADP-ribos 98.0 2.5E-05 5.3E-10 67.1 8.6 102 87-197 42-155 (158)
240 PRK04000 translation initiatio 98.0 2.7E-05 5.8E-10 78.4 10.1 103 89-200 86-199 (411)
241 cd04109 Rab28 Rab28 subfamily. 98.0 5.6E-06 1.2E-10 75.7 4.8 54 218-272 1-60 (215)
242 cd04140 ARHI_like ARHI subfami 98.0 4.9E-06 1.1E-10 72.4 4.1 54 218-274 2-61 (165)
243 cd04109 Rab28 Rab28 subfamily. 98.0 1.6E-05 3.6E-10 72.6 7.8 104 87-199 49-163 (215)
244 cd04126 Rab20 Rab20 subfamily. 98.0 2.6E-05 5.7E-10 71.8 9.1 103 87-198 43-186 (220)
245 KOG1547 Septin CDC10 and relat 98.0 6.3E-06 1.4E-10 75.2 4.9 58 216-274 45-116 (336)
246 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.0 2.2E-05 4.9E-10 69.0 8.4 102 87-197 58-171 (174)
247 cd00157 Rho Rho (Ras homology) 98.0 8.2E-06 1.8E-10 70.8 5.5 56 218-274 1-60 (171)
248 cd04138 H_N_K_Ras_like H-Ras/N 98.0 1.5E-05 3.1E-10 68.3 6.9 101 88-197 49-157 (162)
249 cd04162 Arl9_Arfrp2_like Arl9/ 98.0 8.4E-06 1.8E-10 71.2 5.5 103 85-196 41-160 (164)
250 PRK12298 obgE GTPase CgtA; Rev 98.0 1.8E-05 3.9E-10 79.0 8.5 92 111-202 228-333 (390)
251 cd04161 Arl2l1_Arl13_like Arl2 98.0 6.1E-06 1.3E-10 72.2 4.6 52 219-272 1-53 (167)
252 cd04123 Rab21 Rab21 subfamily. 98.0 6.1E-06 1.3E-10 70.7 4.5 54 219-273 2-60 (162)
253 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.0 2.4E-05 5.1E-10 68.9 8.3 105 84-197 46-159 (172)
254 TIGR03598 GTPase_YsxC ribosome 98.0 4.4E-05 9.5E-10 67.6 9.9 103 89-191 65-179 (179)
255 PRK12735 elongation factor Tu; 98.0 7.7E-06 1.7E-10 81.9 5.5 58 216-273 11-86 (396)
256 KOG0078 GTP-binding protein SE 98.0 2.2E-05 4.8E-10 70.4 7.7 109 83-193 42-165 (207)
257 cd00154 Rab Rab family. Rab G 98.0 2.5E-05 5.4E-10 66.1 7.9 100 87-197 48-157 (159)
258 cd04158 ARD1 ARD1 subfamily. 98.0 9.1E-06 2E-10 71.1 5.2 104 86-198 41-157 (169)
259 PRK00007 elongation factor G; 98.0 9.9E-06 2.1E-10 86.8 6.4 57 218-274 11-87 (693)
260 TIGR00487 IF-2 translation ini 98.0 7.1E-06 1.5E-10 85.9 5.2 58 215-273 85-146 (587)
261 cd04136 Rap_like Rap-like subf 98.0 1.8E-05 3.8E-10 68.2 6.9 104 86-198 47-159 (163)
262 cd04118 Rab24 Rab24 subfamily. 98.0 1.7E-05 3.7E-10 70.8 6.9 105 88-201 50-165 (193)
263 cd01868 Rab11_like Rab11-like. 98.0 2.6E-05 5.7E-10 67.5 7.9 100 88-198 52-161 (165)
264 cd04170 EF-G_bact Elongation f 98.0 6.8E-06 1.5E-10 77.8 4.5 22 219-240 1-22 (268)
265 cd04125 RabA_like RabA-like su 98.0 1E-05 2.2E-10 72.1 5.4 55 219-273 2-60 (188)
266 cd04140 ARHI_like ARHI subfami 98.0 4.1E-05 8.8E-10 66.5 8.9 106 86-200 47-163 (165)
267 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.0 2.8E-05 6.1E-10 69.4 8.1 105 83-197 48-175 (182)
268 cd04168 TetM_like Tet(M)-like 98.0 1.5E-05 3.2E-10 74.2 6.4 56 219-274 1-76 (237)
269 cd04135 Tc10 TC10 subfamily. 98.0 1.2E-05 2.6E-10 70.2 5.4 54 218-273 1-59 (174)
270 cd01861 Rab6 Rab6 subfamily. 98.0 2.6E-05 5.5E-10 67.1 7.4 103 88-199 49-159 (161)
271 cd04139 RalA_RalB RalA/RalB su 98.0 2.9E-05 6.4E-10 66.6 7.8 105 86-199 46-159 (164)
272 PTZ00133 ADP-ribosylation fact 98.0 4.6E-05 1E-09 67.8 9.2 105 86-199 59-175 (182)
273 smart00173 RAS Ras subfamily o 98.0 4.9E-05 1.1E-09 65.6 9.2 104 86-198 46-158 (164)
274 cd04122 Rab14 Rab14 subfamily. 98.0 1.4E-05 3E-10 69.5 5.7 54 218-273 3-62 (166)
275 cd04166 CysN_ATPS CysN_ATPS su 98.0 4.7E-05 1E-09 69.3 9.5 89 104-193 85-185 (208)
276 cd01866 Rab2 Rab2 subfamily. 97.9 3.2E-05 7E-10 67.4 8.1 101 87-198 52-162 (168)
277 PRK04213 GTP-binding protein; 97.9 0.00016 3.5E-09 65.0 12.8 110 89-199 53-189 (201)
278 PRK05433 GTP-binding protein L 97.9 6.8E-05 1.5E-09 78.9 11.7 94 104-201 82-183 (600)
279 cd04158 ARD1 ARD1 subfamily. 97.9 1E-05 2.2E-10 70.8 4.8 51 219-273 1-54 (169)
280 cd04123 Rab21 Rab21 subfamily. 97.9 3.4E-05 7.5E-10 66.0 7.9 102 88-198 49-158 (162)
281 TIGR00484 EF-G translation elo 97.9 1.7E-05 3.6E-10 85.0 7.2 57 218-274 11-87 (689)
282 cd04175 Rap1 Rap1 subgroup. T 97.9 1.8E-05 4E-10 68.4 6.2 104 86-198 47-159 (164)
283 cd04110 Rab35 Rab35 subfamily. 97.9 1.4E-05 3.1E-10 72.0 5.7 56 217-273 6-66 (199)
284 cd04124 RabL2 RabL2 subfamily. 97.9 1.3E-05 2.9E-10 69.5 5.3 55 218-273 1-60 (161)
285 PLN03110 Rab GTPase; Provision 97.9 6.7E-05 1.4E-09 68.7 10.2 102 86-198 59-170 (216)
286 cd01875 RhoG RhoG subfamily. 97.9 4.5E-05 9.9E-10 68.3 8.9 107 84-199 47-174 (191)
287 cd04101 RabL4 RabL4 (Rab-like4 97.9 1.2E-05 2.7E-10 69.4 4.9 55 218-272 1-62 (164)
288 PRK12297 obgE GTPase CgtA; Rev 97.9 5.7E-05 1.2E-09 76.0 10.3 109 87-201 205-326 (424)
289 cd04144 Ras2 Ras2 subfamily. 97.9 3.7E-05 8.1E-10 68.7 8.2 103 88-199 47-160 (190)
290 cd01892 Miro2 Miro2 subfamily. 97.9 7.8E-06 1.7E-10 71.8 3.5 85 115-199 72-163 (169)
291 cd01883 EF1_alpha Eukaryotic e 97.9 5.4E-05 1.2E-09 69.5 9.2 87 104-191 85-194 (219)
292 PTZ00369 Ras-like protein; Pro 97.9 5.4E-05 1.2E-09 67.6 9.0 102 87-197 52-162 (189)
293 cd04176 Rap2 Rap2 subgroup. T 97.9 1.5E-05 3.3E-10 68.8 5.3 54 218-273 2-60 (163)
294 PLN03118 Rab family protein; P 97.9 5.4E-05 1.2E-09 68.9 9.1 104 87-199 61-174 (211)
295 PLN03071 GTP-binding nuclear p 97.9 1.5E-05 3.3E-10 73.2 5.5 102 87-197 61-167 (219)
296 PF00735 Septin: Septin; Inte 97.9 1.1E-05 2.3E-10 77.1 4.5 58 217-274 4-75 (281)
297 cd04116 Rab9 Rab9 subfamily. 97.9 1.4E-05 3.1E-10 69.6 4.9 55 217-272 5-64 (170)
298 cd04115 Rab33B_Rab33A Rab33B/R 97.9 1.8E-05 4E-10 69.1 5.7 55 218-273 3-62 (170)
299 cd04114 Rab30 Rab30 subfamily. 97.9 1.4E-05 3E-10 69.4 4.8 56 217-273 7-67 (169)
300 smart00178 SAR Sar1p-like memb 97.9 2.1E-05 4.5E-10 70.1 6.0 103 87-198 60-181 (184)
301 cd01874 Cdc42 Cdc42 subfamily. 97.9 3.9E-05 8.4E-10 67.8 7.7 104 85-197 46-170 (175)
302 PRK11058 GTPase HflX; Provisio 97.9 0.00011 2.5E-09 74.1 11.9 108 89-200 246-360 (426)
303 cd04133 Rop_like Rop subfamily 97.9 2.6E-05 5.6E-10 69.2 6.5 106 84-198 45-169 (176)
304 cd04144 Ras2 Ras2 subfamily. 97.9 1.3E-05 2.9E-10 71.6 4.6 53 219-273 1-58 (190)
305 TIGR02034 CysN sulfate adenyly 97.9 0.0001 2.2E-09 74.1 11.4 88 104-192 88-187 (406)
306 smart00174 RHO Rho (Ras homolo 97.9 3.5E-05 7.6E-10 67.3 7.1 104 86-198 44-168 (174)
307 cd04113 Rab4 Rab4 subfamily. 97.9 4.2E-05 9.1E-10 65.9 7.5 102 87-197 48-157 (161)
308 PLN03108 Rab family protein; P 97.9 0.00011 2.4E-09 66.9 10.6 104 88-200 55-167 (210)
309 cd01873 RhoBTB RhoBTB subfamil 97.9 3.8E-05 8.3E-10 69.3 7.5 103 84-197 62-191 (195)
310 TIGR00475 selB selenocysteine- 97.9 1.2E-05 2.5E-10 84.4 4.6 54 219-272 2-60 (581)
311 PRK05306 infB translation init 97.9 1.2E-05 2.6E-10 86.5 4.7 58 215-273 288-348 (787)
312 cd01863 Rab18 Rab18 subfamily. 97.9 4.1E-05 8.9E-10 65.9 7.2 102 87-197 48-157 (161)
313 cd04131 Rnd Rnd subfamily. Th 97.9 4.9E-05 1.1E-09 67.5 7.7 104 84-197 45-171 (178)
314 cd04117 Rab15 Rab15 subfamily. 97.9 3.9E-05 8.4E-10 66.6 6.9 101 87-198 48-158 (161)
315 cd00877 Ran Ran (Ras-related n 97.9 2.2E-05 4.8E-10 68.6 5.3 55 219-273 2-60 (166)
316 PRK12739 elongation factor G; 97.9 2.5E-05 5.5E-10 83.6 6.8 58 217-274 8-85 (691)
317 cd01864 Rab19 Rab19 subfamily. 97.8 6.4E-05 1.4E-09 65.2 8.1 101 88-197 52-161 (165)
318 PLN03127 Elongation factor Tu; 97.8 1.9E-05 4.2E-10 80.1 5.5 58 216-273 60-135 (447)
319 PF02421 FeoB_N: Ferrous iron 97.8 5.9E-06 1.3E-10 71.8 1.4 77 119-197 77-156 (156)
320 cd04150 Arf1_5_like Arf1-Arf5- 97.8 2.1E-05 4.5E-10 68.2 4.8 54 218-273 1-55 (159)
321 PLN03110 Rab GTPase; Provision 97.8 2.6E-05 5.6E-10 71.5 5.6 56 217-273 12-72 (216)
322 PTZ00133 ADP-ribosylation fact 97.8 2.3E-05 5E-10 69.8 5.1 55 217-273 17-72 (182)
323 cd04142 RRP22 RRP22 subfamily. 97.8 0.00012 2.7E-09 66.1 9.9 110 86-197 47-169 (198)
324 cd04114 Rab30 Rab30 subfamily. 97.8 6.4E-05 1.4E-09 65.2 7.7 102 88-198 56-165 (169)
325 cd00879 Sar1 Sar1 subfamily. 97.8 4.1E-05 9E-10 68.0 6.6 104 87-199 62-188 (190)
326 cd01871 Rac1_like Rac1-like su 97.8 6.2E-05 1.3E-09 66.4 7.7 103 86-197 47-170 (174)
327 cd04125 RabA_like RabA-like su 97.8 5.3E-05 1.2E-09 67.4 7.3 102 87-199 48-159 (188)
328 cd04146 RERG_RasL11_like RERG/ 97.8 2E-05 4.4E-10 68.3 4.4 54 219-274 1-59 (165)
329 cd01860 Rab5_related Rab5-rela 97.8 7.8E-05 1.7E-09 64.2 8.0 104 86-198 48-159 (163)
330 cd04115 Rab33B_Rab33A Rab33B/R 97.8 0.00014 3E-09 63.5 9.6 108 86-202 49-166 (170)
331 cd04143 Rhes_like Rhes_like su 97.8 0.00017 3.6E-09 67.6 10.7 106 87-201 47-170 (247)
332 cd04147 Ras_dva Ras-dva subfam 97.8 6.3E-05 1.4E-09 67.7 7.6 103 88-199 47-160 (198)
333 cd04132 Rho4_like Rho4-like su 97.8 2.6E-05 5.6E-10 69.2 5.0 54 218-272 1-59 (187)
334 PRK00049 elongation factor Tu; 97.8 2.1E-05 4.6E-10 78.7 4.9 58 216-273 11-86 (396)
335 cd04107 Rab32_Rab38 Rab38/Rab3 97.8 2.7E-05 5.8E-10 70.3 5.0 54 218-272 1-60 (201)
336 cd04176 Rap2 Rap2 subgroup. T 97.8 4.6E-05 9.9E-10 65.8 6.2 102 87-197 48-158 (163)
337 CHL00189 infB translation init 97.8 1.7E-05 3.6E-10 84.7 4.0 58 215-273 242-306 (742)
338 PRK05506 bifunctional sulfate 97.8 1.2E-05 2.6E-10 85.3 3.0 27 216-242 23-49 (632)
339 cd04127 Rab27A Rab27a subfamil 97.8 2.8E-05 6E-10 68.4 4.8 24 217-240 4-27 (180)
340 cd04146 RERG_RasL11_like RERG/ 97.8 4.8E-05 1E-09 65.9 6.1 103 87-197 46-159 (165)
341 cd00157 Rho Rho (Ras homology) 97.8 2.1E-05 4.6E-10 68.2 3.8 83 116-198 67-169 (171)
342 cd04130 Wrch_1 Wrch-1 subfamil 97.8 2.5E-05 5.4E-10 68.5 4.2 102 86-196 46-168 (173)
343 TIGR00491 aIF-2 translation in 97.8 2.1E-05 4.5E-10 82.4 4.3 36 217-254 4-40 (590)
344 TIGR01393 lepA GTP-binding pro 97.8 0.00011 2.3E-09 77.3 9.6 97 104-201 78-179 (595)
345 COG4917 EutP Ethanolamine util 97.8 0.00019 4.1E-09 59.4 8.8 92 108-200 52-144 (148)
346 PRK12736 elongation factor Tu; 97.8 0.00021 4.5E-09 71.6 11.1 83 104-187 83-178 (394)
347 KOG0093 GTPase Rab3, small G p 97.8 7.4E-05 1.6E-09 63.3 6.5 101 86-197 68-178 (193)
348 cd04111 Rab39 Rab39 subfamily. 97.7 3.1E-05 6.8E-10 70.6 4.7 55 218-273 3-63 (211)
349 smart00177 ARF ARF-like small 97.7 4E-05 8.7E-10 67.6 5.2 55 217-273 13-68 (175)
350 PTZ00369 Ras-like protein; Pro 97.7 4.2E-05 9E-10 68.3 5.4 56 217-273 5-64 (189)
351 cd04148 RGK RGK subfamily. Th 97.7 8.7E-05 1.9E-09 68.3 7.6 104 85-199 47-160 (221)
352 PRK12317 elongation factor 1-a 97.7 0.00013 2.7E-09 73.8 9.3 89 104-193 92-196 (425)
353 PRK05124 cysN sulfate adenylyl 97.7 0.00017 3.7E-09 73.9 10.3 90 104-194 115-217 (474)
354 cd04108 Rab36_Rab34 Rab34/Rab3 97.7 3.7E-05 8.1E-10 67.5 4.8 54 219-273 2-60 (170)
355 PLN03108 Rab family protein; P 97.7 5E-05 1.1E-09 69.2 5.8 56 217-273 6-66 (210)
356 PF10662 PduV-EutP: Ethanolami 97.7 2.2E-05 4.7E-10 67.1 3.1 45 219-273 3-47 (143)
357 cd04147 Ras_dva Ras-dva subfam 97.7 3.6E-05 7.7E-10 69.3 4.6 53 219-273 1-58 (198)
358 cd04134 Rho3 Rho3 subfamily. 97.7 7.9E-05 1.7E-09 66.5 6.8 106 85-199 45-171 (189)
359 smart00174 RHO Rho (Ras homolo 97.7 4.2E-05 9.1E-10 66.8 4.9 53 220-273 1-57 (174)
360 cd01876 YihA_EngB The YihA (En 97.7 0.00036 7.8E-09 59.6 10.7 82 119-200 80-169 (170)
361 PF08477 Miro: Miro-like prote 97.7 3.5E-05 7.6E-10 63.0 4.1 56 219-274 1-62 (119)
362 cd04111 Rab39 Rab39 subfamily. 97.7 0.00011 2.4E-09 67.0 7.8 103 88-199 52-163 (211)
363 KOG0098 GTPase Rab2, small G p 97.7 5.8E-05 1.2E-09 66.5 5.4 122 61-193 26-159 (216)
364 CHL00071 tufA elongation facto 97.7 0.00022 4.7E-09 71.8 10.5 85 104-189 83-180 (409)
365 TIGR00483 EF-1_alpha translati 97.7 0.00014 3E-09 73.6 9.1 88 104-192 93-197 (426)
366 cd04148 RGK RGK subfamily. Th 97.7 3.9E-05 8.4E-10 70.6 4.6 55 219-273 2-61 (221)
367 TIGR00485 EF-Tu translation el 97.7 0.00046 9.9E-09 69.1 12.6 84 104-188 83-179 (394)
368 PRK05506 bifunctional sulfate 97.7 0.00023 5E-09 75.6 11.0 88 104-192 112-211 (632)
369 cd01870 RhoA_like RhoA-like su 97.7 6E-05 1.3E-09 65.9 5.5 53 219-273 3-60 (175)
370 TIGR00485 EF-Tu translation el 97.7 5.1E-05 1.1E-09 75.9 5.5 58 216-273 11-86 (394)
371 cd04117 Rab15 Rab15 subfamily. 97.7 6.2E-05 1.3E-09 65.3 5.4 54 219-273 2-60 (161)
372 PRK04004 translation initiatio 97.7 4.7E-05 1E-09 79.9 5.3 37 216-254 5-42 (586)
373 PRK12736 elongation factor Tu; 97.7 4.2E-05 9E-10 76.6 4.6 58 216-273 11-86 (394)
374 CHL00189 infB translation init 97.7 0.00027 5.8E-09 75.6 10.8 97 104-201 303-409 (742)
375 cd01870 RhoA_like RhoA-like su 97.7 0.00014 3.1E-09 63.5 7.3 106 84-198 45-171 (175)
376 PLN03126 Elongation factor Tu; 97.7 5.1E-05 1.1E-09 77.6 5.1 58 216-273 80-155 (478)
377 cd00876 Ras Ras family. The R 97.6 0.0002 4.3E-09 61.1 7.9 94 104-198 55-157 (160)
378 KOG0095 GTPase Rab30, small G 97.6 0.00014 3.1E-09 61.7 6.6 126 60-194 26-161 (213)
379 cd04105 SR_beta Signal recogni 97.6 6.2E-05 1.3E-09 68.3 4.9 53 219-273 2-59 (203)
380 COG0218 Predicted GTPase [Gene 97.6 0.00066 1.4E-08 60.9 11.2 94 107-200 90-195 (200)
381 PLN00223 ADP-ribosylation fact 97.6 7.8E-05 1.7E-09 66.3 5.3 54 217-272 17-71 (181)
382 cd04116 Rab9 Rab9 subfamily. 97.6 0.00025 5.4E-09 61.6 8.4 103 86-197 52-166 (170)
383 cd04126 Rab20 Rab20 subfamily. 97.6 6.1E-05 1.3E-09 69.4 4.6 54 218-273 1-55 (220)
384 cd04161 Arl2l1_Arl13_like Arl2 97.6 0.00029 6.2E-09 61.6 8.6 102 86-196 41-163 (167)
385 PLN03071 GTP-binding nuclear p 97.6 0.0001 2.2E-09 67.7 6.0 58 216-273 12-73 (219)
386 COG1100 GTPase SAR1 and relate 97.6 7.8E-05 1.7E-09 67.7 5.2 56 218-274 6-66 (219)
387 cd00882 Ras_like_GTPase Ras-li 97.6 3.7E-05 8E-10 63.7 2.8 52 222-274 1-57 (157)
388 KOG0088 GTPase Rab21, small G 97.6 5.9E-05 1.3E-09 64.6 4.0 108 82-198 56-171 (218)
389 KOG0075 GTP-binding ADP-ribosy 97.6 0.00035 7.7E-09 59.3 8.5 124 77-200 44-180 (186)
390 cd01882 BMS1 Bms1. Bms1 is an 97.6 8.9E-05 1.9E-09 68.5 5.6 57 215-273 37-94 (225)
391 cd04155 Arl3 Arl3 subfamily. 97.6 0.00011 2.4E-09 64.0 5.9 102 87-197 57-170 (173)
392 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.6 0.0001 2.2E-09 64.8 5.6 54 218-273 3-61 (172)
393 PRK10512 selenocysteinyl-tRNA- 97.6 6.9E-05 1.5E-09 79.0 5.2 54 219-272 2-61 (614)
394 cd04169 RF3 RF3 subfamily. Pe 97.6 7.7E-05 1.7E-09 70.7 5.0 21 219-239 4-24 (267)
395 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.6 0.0003 6.5E-09 64.9 8.7 106 83-197 44-171 (222)
396 PRK12735 elongation factor Tu; 97.6 0.0004 8.8E-09 69.6 10.3 84 104-188 83-179 (396)
397 PLN00043 elongation factor 1-a 97.6 0.00034 7.3E-09 71.2 9.7 87 104-191 93-202 (447)
398 PF00350 Dynamin_N: Dynamin fa 97.6 6.4E-05 1.4E-09 65.4 3.8 31 220-250 1-31 (168)
399 TIGR00487 IF-2 translation ini 97.6 0.00025 5.5E-09 74.3 8.8 95 104-199 143-247 (587)
400 PRK00049 elongation factor Tu; 97.6 0.00051 1.1E-08 68.9 10.6 84 104-188 83-179 (396)
401 cd04130 Wrch_1 Wrch-1 subfamil 97.6 9.1E-05 2E-09 64.9 4.6 54 218-273 1-59 (173)
402 TIGR00231 small_GTP small GTP- 97.5 0.00019 4E-09 60.3 6.1 102 88-198 50-160 (161)
403 cd04162 Arl9_Arfrp2_like Arl9/ 97.5 9.9E-05 2.1E-09 64.4 4.4 53 220-273 2-55 (164)
404 KOG0079 GTP-binding protein H- 97.5 0.00032 7E-09 59.5 7.2 102 86-198 55-165 (198)
405 TIGR00491 aIF-2 translation in 97.5 0.0011 2.3E-08 69.7 12.7 103 90-201 71-215 (590)
406 cd01892 Miro2 Miro2 subfamily. 97.5 0.00017 3.7E-09 63.2 5.8 57 216-273 3-65 (169)
407 cd00882 Ras_like_GTPase Ras-li 97.5 0.00029 6.2E-09 58.3 6.9 102 87-197 44-155 (157)
408 KOG1489 Predicted GTP-binding 97.5 0.00035 7.6E-09 66.5 8.0 85 113-199 267-364 (366)
409 TIGR00450 mnmE_trmE_thdF tRNA 97.5 0.00077 1.7E-08 68.5 11.1 81 113-198 275-356 (442)
410 cd04134 Rho3 Rho3 subfamily. 97.5 0.00016 3.5E-09 64.5 5.5 54 219-273 2-59 (189)
411 PRK05306 infB translation init 97.5 0.00035 7.6E-09 75.3 8.8 96 104-200 345-450 (787)
412 COG5019 CDC3 Septin family pro 97.5 0.0001 2.2E-09 71.5 4.1 59 216-274 22-94 (373)
413 cd01874 Cdc42 Cdc42 subfamily. 97.5 0.0002 4.4E-09 63.2 5.7 54 218-273 2-60 (175)
414 COG0536 Obg Predicted GTPase [ 97.5 0.00031 6.8E-09 67.5 7.1 90 113-203 230-334 (369)
415 KOG0394 Ras-related GTPase [Ge 97.5 0.00031 6.7E-09 61.9 6.5 110 74-195 42-171 (210)
416 PF00009 GTP_EFTU: Elongation 97.4 4.3E-05 9.4E-10 68.2 1.2 57 217-273 3-81 (188)
417 PTZ00141 elongation factor 1- 97.4 0.00063 1.4E-08 69.2 9.7 88 104-192 93-203 (446)
418 PRK05124 cysN sulfate adenylyl 97.4 0.00012 2.6E-09 75.0 4.4 25 216-240 26-50 (474)
419 TIGR00483 EF-1_alpha translati 97.4 0.00015 3.2E-09 73.4 5.0 57 216-272 6-95 (426)
420 cd04143 Rhes_like Rhes_like su 97.4 0.00017 3.7E-09 67.6 4.8 53 219-273 2-59 (247)
421 cd04177 RSR1 RSR1 subgroup. R 97.4 0.00052 1.1E-08 59.7 7.6 102 87-197 48-159 (168)
422 KOG1423 Ras-like GTPase ERA [C 97.4 0.00058 1.3E-08 64.8 8.2 89 113-201 148-270 (379)
423 cd04135 Tc10 TC10 subfamily. 97.4 0.00016 3.5E-09 63.0 4.3 102 87-197 47-169 (174)
424 KOG2655 Septin family protein 97.4 0.00015 3.2E-09 70.8 4.2 59 216-274 20-91 (366)
425 cd01883 EF1_alpha Eukaryotic e 97.4 0.00012 2.5E-09 67.3 3.4 55 219-273 1-88 (219)
426 TIGR01394 TypA_BipA GTP-bindin 97.4 0.00072 1.6E-08 71.1 9.5 84 104-188 72-167 (594)
427 PLN03127 Elongation factor Tu; 97.4 0.00096 2.1E-08 67.9 10.2 60 104-164 132-194 (447)
428 cd01871 Rac1_like Rac1-like su 97.4 0.00019 4.1E-09 63.3 4.2 53 218-272 2-59 (174)
429 PRK14845 translation initiatio 97.3 0.0012 2.6E-08 73.1 10.6 103 90-201 528-672 (1049)
430 KOG1487 GTP-binding protein DR 97.3 0.00023 4.9E-09 66.0 4.3 57 218-275 60-119 (358)
431 COG2895 CysN GTPases - Sulfate 97.3 0.00048 1E-08 66.5 6.6 87 104-191 94-192 (431)
432 COG2229 Predicted GTPase [Gene 97.3 0.0014 3E-08 57.8 8.8 90 103-193 75-169 (187)
433 cd04137 RheB Rheb (Ras Homolog 97.3 0.0013 2.8E-08 57.8 8.8 105 87-200 48-161 (180)
434 cd04167 Snu114p Snu114p subfam 97.3 0.00012 2.6E-09 66.8 2.2 22 219-240 2-23 (213)
435 cd04128 Spg1 Spg1p. Spg1p (se 97.3 0.00044 9.5E-09 61.5 5.6 55 218-273 1-60 (182)
436 PTZ00132 GTP-binding nuclear p 97.3 0.00044 9.6E-09 63.0 5.6 57 216-272 8-68 (215)
437 TIGR02034 CysN sulfate adenyly 97.3 0.00019 4.2E-09 72.1 3.4 55 218-272 1-90 (406)
438 smart00053 DYNc Dynamin, GTPas 97.2 0.00054 1.2E-08 63.9 5.8 72 218-290 27-153 (240)
439 cd01885 EF2 EF2 (for archaea a 97.2 0.00036 7.7E-09 64.4 4.5 23 219-241 2-24 (222)
440 COG0532 InfB Translation initi 97.2 0.0017 3.7E-08 65.9 9.6 96 104-202 63-170 (509)
441 cd04103 Centaurin_gamma Centau 97.2 0.001 2.2E-08 57.7 7.1 98 86-197 45-154 (158)
442 COG3276 SelB Selenocysteine-sp 97.2 0.0021 4.5E-08 63.9 9.9 99 103-202 57-162 (447)
443 TIGR00437 feoB ferrous iron tr 97.2 0.00084 1.8E-08 70.7 7.7 80 119-200 71-153 (591)
444 PRK09554 feoB ferrous iron tra 97.2 0.0011 2.3E-08 71.8 8.6 81 119-201 84-167 (772)
445 KOG1145 Mitochondrial translat 97.2 0.002 4.3E-08 65.5 9.7 97 103-202 208-316 (683)
446 KOG0091 GTPase Rab39, small G 97.2 0.0007 1.5E-08 58.5 5.5 93 102-196 63-167 (213)
447 PTZ00132 GTP-binding nuclear p 97.2 0.00094 2E-08 60.8 6.8 101 87-196 57-162 (215)
448 PF00071 Ras: Ras family; Int 97.2 0.00033 7.1E-09 60.3 3.6 102 85-195 45-154 (162)
449 PLN03126 Elongation factor Tu; 97.2 0.0023 5E-08 65.6 10.3 84 104-188 152-248 (478)
450 cd04131 Rnd Rnd subfamily. Th 97.2 0.0007 1.5E-08 60.0 5.8 54 218-272 2-59 (178)
451 PF00071 Ras: Ras family; Int 97.2 0.00062 1.3E-08 58.5 5.3 54 219-273 1-59 (162)
452 cd01885 EF2 EF2 (for archaea a 97.2 0.0014 3.1E-08 60.4 7.7 56 104-160 81-138 (222)
453 COG5257 GCD11 Translation init 97.1 0.0019 4.2E-08 61.7 8.5 99 103-202 93-202 (415)
454 PRK10218 GTP-binding protein; 97.1 0.0019 4.2E-08 68.0 9.4 94 87-189 67-172 (607)
455 PF00025 Arf: ADP-ribosylation 97.1 0.00013 2.8E-09 64.5 0.6 103 86-197 56-171 (175)
456 TIGR03680 eif2g_arch translati 97.1 0.00035 7.5E-09 70.3 3.6 24 217-240 4-27 (406)
457 cd04129 Rho2 Rho2 subfamily. 97.1 0.00068 1.5E-08 60.3 5.1 55 219-274 3-61 (187)
458 PRK04004 translation initiatio 97.1 0.0028 6.1E-08 66.6 10.2 100 90-198 73-214 (586)
459 KOG0083 GTPase Rab26/Rab37, sm 97.1 0.00099 2.1E-08 55.6 5.2 98 86-192 45-150 (192)
460 cd04121 Rab40 Rab40 subfamily. 97.1 0.00077 1.7E-08 60.5 4.9 56 217-273 6-66 (189)
461 cd04120 Rab12 Rab12 subfamily. 97.1 0.00068 1.5E-08 61.5 4.6 54 219-273 2-60 (202)
462 cd04129 Rho2 Rho2 subfamily. 97.1 0.0013 2.8E-08 58.5 6.3 104 86-198 47-169 (187)
463 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.1 0.0009 1.9E-08 61.7 5.3 54 218-272 2-59 (222)
464 TIGR00503 prfC peptide chain r 97.0 0.0013 2.8E-08 68.3 6.9 129 215-346 9-161 (527)
465 TIGR01393 lepA GTP-binding pro 97.0 0.00054 1.2E-08 72.1 4.1 56 219-274 5-82 (595)
466 KOG0462 Elongation factor-type 97.0 0.00097 2.1E-08 67.7 5.6 95 103-198 132-231 (650)
467 PRK10218 GTP-binding protein; 97.0 0.00076 1.6E-08 71.0 5.1 57 218-274 6-80 (607)
468 KOG0087 GTPase Rab11/YPT3, sma 97.0 0.00099 2.1E-08 59.9 5.0 118 65-193 38-167 (222)
469 cd04102 RabL3 RabL3 (Rab-like3 97.0 0.0048 1E-07 56.0 9.6 92 87-187 53-175 (202)
470 cd01882 BMS1 Bms1. Bms1 is an 97.0 0.0045 9.7E-08 57.1 9.5 76 112-187 95-181 (225)
471 cd04167 Snu114p Snu114p subfam 97.0 0.0058 1.3E-07 55.6 10.1 56 104-160 79-136 (213)
472 cd04102 RabL3 RabL3 (Rab-like3 97.0 0.0011 2.4E-08 60.1 5.2 55 218-273 1-65 (202)
473 PF00025 Arf: ADP-ribosylation 97.0 0.0007 1.5E-08 59.8 3.8 55 216-272 13-68 (175)
474 PRK00741 prfC peptide chain re 97.0 0.0035 7.6E-08 65.1 9.5 122 219-346 12-160 (526)
475 PRK09435 membrane ATPase/prote 96.9 0.0065 1.4E-07 59.3 10.2 105 82-201 143-259 (332)
476 KOG0081 GTPase Rab27, small G 96.9 0.005 1.1E-07 53.1 8.0 94 102-197 72-176 (219)
477 cd01888 eIF2_gamma eIF2-gamma 96.9 0.00086 1.9E-08 60.7 3.6 22 219-240 2-23 (203)
478 PTZ00141 elongation factor 1- 96.9 0.0012 2.5E-08 67.3 4.8 58 216-273 6-96 (446)
479 cd01896 DRG The developmentall 96.9 0.0035 7.7E-08 58.1 7.6 47 148-199 177-223 (233)
480 cd01886 EF-G Elongation factor 96.8 0.0045 9.7E-08 58.8 8.3 57 104-161 72-130 (270)
481 COG5256 TEF1 Translation elong 96.8 0.0048 1E-07 61.0 8.5 137 44-193 38-202 (428)
482 PRK13351 elongation factor G; 96.8 0.0015 3.3E-08 70.0 5.6 125 219-346 10-154 (687)
483 cd04133 Rop_like Rop subfamily 96.8 0.0017 3.6E-08 57.6 4.7 54 218-273 2-60 (176)
484 TIGR01394 TypA_BipA GTP-bindin 96.8 0.0013 2.7E-08 69.3 4.5 56 219-274 3-76 (594)
485 KOG0461 Selenocysteine-specifi 96.8 0.0063 1.4E-07 58.7 8.7 96 103-199 77-190 (522)
486 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.8 0.0016 3.5E-08 60.4 4.5 55 217-272 13-71 (232)
487 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.7 0.003 6.5E-08 56.3 5.8 55 217-272 5-63 (182)
488 PTZ00416 elongation factor 2; 96.7 0.0015 3.3E-08 71.4 4.5 35 218-252 20-54 (836)
489 COG0370 FeoB Fe2+ transport sy 96.7 0.0014 3E-08 68.4 3.9 83 119-201 80-163 (653)
490 cd04103 Centaurin_gamma Centau 96.7 0.0027 5.8E-08 55.1 5.2 52 219-273 2-58 (158)
491 PLN00023 GTP-binding protein; 96.7 0.0029 6.3E-08 61.4 5.6 56 217-272 21-93 (334)
492 cd01875 RhoG RhoG subfamily. 96.6 0.0032 6.9E-08 56.3 5.4 56 217-273 3-62 (191)
493 KOG0076 GTP-binding ADP-ribosy 96.6 0.0035 7.6E-08 54.8 5.0 92 102-193 74-178 (197)
494 TIGR00490 aEF-2 translation el 96.6 0.0015 3.3E-08 70.4 3.3 57 218-274 20-98 (720)
495 PF09439 SRPRB: Signal recogni 96.5 0.0011 2.3E-08 59.1 1.5 92 219-312 5-105 (181)
496 KOG1191 Mitochondrial GTPase [ 96.5 0.0032 6.9E-08 63.3 4.9 89 110-198 338-446 (531)
497 cd04169 RF3 RF3 subfamily. Pe 96.5 0.023 5E-07 53.9 10.5 58 104-162 79-138 (267)
498 cd04168 TetM_like Tet(M)-like 96.5 0.0095 2.1E-07 55.5 7.7 57 104-161 72-130 (237)
499 PLN00116 translation elongatio 96.5 0.0038 8.1E-08 68.5 5.6 25 218-242 20-44 (843)
500 KOG0072 GTP-binding ADP-ribosy 96.4 0.012 2.6E-07 50.0 6.9 98 102-199 67-176 (182)
No 1
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=1e-55 Score=422.08 Aligned_cols=275 Identities=41% Similarity=0.727 Sum_probs=245.1
Q ss_pred CcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCe
Q 017100 99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178 (377)
Q Consensus 99 ~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~ 178 (377)
.++||||||+++.+++.+.++.+|+||+|+|+|+|.++.+..+.+++.++|+++|+||+||++....+.|.+++++.+..
T Consensus 3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~ 82 (287)
T PRK09563 3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK 82 (287)
T ss_pred cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence 37899999999999999999999999999999999999999898888899999999999999877678899988776778
Q ss_pred EEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE
Q 017100 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV 258 (377)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~ 258 (377)
++++|++++.|++.|.+.+.++.+....+.+.++.....+++++||+||||||||||+|++++.+.+++.||+|++.+++
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 162 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI 162 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence 89999999999999988887776544333333333445689999999999999999999998888999999999999999
Q ss_pred EeCCceEEEcCCccccCCCCcHHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCCChhhhhhhhccCCCCCcHHHHH
Q 017100 259 RFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV 338 (377)
Q Consensus 259 ~~~~~~~l~DTPG~i~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l 338 (377)
+++.+++|+||||++.+...+.+.+.+++++++|++..++.+++++++++.+.+. +++.+.++|+++....+..+|+
T Consensus 163 ~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~---~~~~l~~~y~~~~~~~~~~~~l 239 (287)
T PRK09563 163 KLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKH---YPERLKERYKLDELPEDILELL 239 (287)
T ss_pred EeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhh---CHHHHHHHhCCCCCCCCHHHHH
Confidence 9998999999999999988888899999999999999999999999999999886 5778999999975445789999
Q ss_pred HHHHHHh----cCC--cHHHHHHHHHHHHHcCCCCceeccCCCC
Q 017100 339 QKLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPPR 376 (377)
Q Consensus 339 ~~~a~~~----~~g--D~~~Aa~~il~d~~~Gklg~~~ld~pp~ 376 (377)
+.+|.+. ++| |+++||+.||+||++||+|+||||.||.
T Consensus 240 ~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld~~~~ 283 (287)
T PRK09563 240 EAIARKRGALRKGGEIDYERASELLLNEFRNGKLGKITLETPEM 283 (287)
T ss_pred HHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCcEEccCCcc
Confidence 9999874 345 9999999999999999999999999985
No 2
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=1.5e-54 Score=412.06 Aligned_cols=270 Identities=43% Similarity=0.701 Sum_probs=241.5
Q ss_pred cCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeE
Q 017100 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (377)
Q Consensus 100 ~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~v 179 (377)
++||||||.++.+++.+.++++|+||+|+|+|.|.++.++.+.+++.++|+++|+||+||+++.....|.+++++.+..+
T Consensus 1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v 80 (276)
T TIGR03596 1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA 80 (276)
T ss_pred CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence 47999999999999999999999999999999999999999988888899999999999998877788988887767789
Q ss_pred EEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE
Q 017100 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (377)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (377)
+++|++++.|+..|.+.+.++.+........++.....+++++||+||||||||||+|.+++.+.+++.||+|++.+++.
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~ 160 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK 160 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE
Confidence 99999999999999888877765443333333334456899999999999999999999988889999999999999999
Q ss_pred eCCceEEEcCCccccCCCCcHHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCCChhhhhhhhccCCCCCcHHHHHH
Q 017100 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (377)
Q Consensus 260 ~~~~~~l~DTPG~i~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~ 339 (377)
++.++.|+||||++.+...+.+.+++++++++|++..++.+++++++++.+++. +++.+.+.|+++....+..+|++
T Consensus 161 ~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~i~~~~~~~~~~l~ 237 (276)
T TIGR03596 161 LSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEH---YPERLKERYKLDELPEDIVELLE 237 (276)
T ss_pred eCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhh---CHHHHHHHhCcCCCCCCHHHHHH
Confidence 988999999999999999999999999999999999999999999999999886 56789999999865557899999
Q ss_pred HHHHHh----cCC--cHHHHHHHHHHHHHcCCCCceecc
Q 017100 340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLE 372 (377)
Q Consensus 340 ~~a~~~----~~g--D~~~Aa~~il~d~~~Gklg~~~ld 372 (377)
.+|++. ++| |+++||+.||+||++||||+||||
T Consensus 238 ~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld 276 (276)
T TIGR03596 238 AIAKKRGCLLKGGELDLDRAAEILLNDFRKGKLGRITLE 276 (276)
T ss_pred HHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCceecC
Confidence 999874 344 999999999999999999999997
No 3
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=4.5e-47 Score=367.00 Aligned_cols=278 Identities=37% Similarity=0.658 Sum_probs=232.0
Q ss_pred CCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHc-C
Q 017100 98 RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-G 176 (377)
Q Consensus 98 ~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~-g 176 (377)
..+|||||||.++.+++.++++.+|+|++|+|||+|.+++++.++++..+++.++|+||+||++.....+|.+++.+. +
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~ 91 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG 91 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999887 5
Q ss_pred CeEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE
Q 017100 177 TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (377)
Q Consensus 177 ~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~ 256 (377)
...++++++.+.+...+...+..+....-...+.++......+|++|||||||||||||+|.+++.+.+++.||+|++.|
T Consensus 92 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q 171 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ 171 (322)
T ss_pred CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE
Confidence 77889999998888888765554432222222334444556789999999999999999999999999999999999999
Q ss_pred EEEeCCceEEEcCCccccCCCCc-HHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCCChhhhhh-hhccCC-CCCc
Q 017100 257 WVRFGKDLEFLDSPGIIPMRISD-QAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQN-RYKIDM-DGTC 333 (377)
Q Consensus 257 ~~~~~~~~~l~DTPG~i~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~-~y~i~~-~~~~ 333 (377)
+++++.+++|+||||++++...+ ...+.+++..++|++.+++...++..++..+. ....+.+.+.. .|.... ...+
T Consensus 172 ~i~~~~~i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~ 250 (322)
T COG1161 172 WIKLDDGIYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLL-IDEHYGEKLNITRYESNPIHRTD 250 (322)
T ss_pred EEEcCCCeEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhhh-hhhhhhHhhCCcccccccccccC
Confidence 99999999999999999998888 78888999999999999999999988887663 11113333333 343321 1235
Q ss_pred HHHHHHHHHHHh-----cCC--cHHHHHHHHHHHHHcCCCCceeccCCCC
Q 017100 334 GKTFVQKLALHL-----FNG--DTHQAAFRILTDFRKGKFGWISLERPPR 376 (377)
Q Consensus 334 ~~~~l~~~a~~~-----~~g--D~~~Aa~~il~d~~~Gklg~~~ld~pp~ 376 (377)
.++|++.+|.+. ++| |+++||+.+++||+.|++|++++|.+++
T Consensus 251 ~~~~l~~~a~~rg~~l~~~g~~d~~~~~~~~~~d~~~gklg~~~~~~~~~ 300 (322)
T COG1161 251 PEEFLELIAKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWFSLEEPED 300 (322)
T ss_pred HHHHHHHHHHHhhhhhcCCCCccHHHHHHHHHHHHHhCCcceeecCCccc
Confidence 678888888653 233 9999999999999999999999987653
No 4
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=1.2e-45 Score=351.41 Aligned_cols=276 Identities=34% Similarity=0.553 Sum_probs=211.6
Q ss_pred CcEEEEc-CCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCH
Q 017100 88 ADLYYWT-KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISM 162 (377)
Q Consensus 88 ~d~vi~d-~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~ 162 (377)
.+...|+ .+..+.+|++++.+.+.++++++++.+||||+|+|||+|++++++++++++ +++++|+|+||+||++.
T Consensus 113 ~e~~~~~e~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr 192 (435)
T KOG2484|consen 113 EEEMLYAEEEYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR 192 (435)
T ss_pred hHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCH
Confidence 3344454 678889999999999999999999999999999999999999999999987 46999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeeCccCCCc--hhhh--h-H-HHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhh
Q 017100 163 ADRNAWATYFAKQGTKVIFSNGQLGMGT--MKLS--R-L-AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINR 236 (377)
Q Consensus 163 ~~~~~~~~~~~~~g~~vi~iSa~~g~gi--~~L~--~-~-l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~ 236 (377)
+.++.|+.||++.|..+.|.++....+. ..+. . + .+.+......+ ...+.....++|+|||||||||||+||+
T Consensus 193 Ev~e~Wl~YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny-~~~~~lk~sIrvGViG~PNVGKSSvINs 271 (435)
T KOG2484|consen 193 EVVEKWLVYLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNY-CRKGELKTSIRVGIIGYPNVGKSSVINS 271 (435)
T ss_pred HHHHHHHHHHHhhCCcceeecccccccccccccccchhhhHHHHHHHhcCc-ccccccCcceEeeeecCCCCChhHHHHH
Confidence 9999999999999999999876654433 1111 0 0 00011111111 1223345679999999999999999999
Q ss_pred hhcCCceeccCCCCceeEEEEEEeCCceEEEcCCccccCCCCcHHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCC
Q 017100 237 LLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV 316 (377)
Q Consensus 237 L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~ 316 (377)
|..++.|.|++.||.|+.+|+++++.++.|+|+|||+++..++.. ++.|..|..+.....+...+. ..|.+.
T Consensus 272 L~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~~-~~~Lrn~~~i~~~~dp~~~v~----~iL~~~--- 343 (435)
T KOG2484|consen 272 LKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD-ALALRNCIPIGKVADPVTPVS----CILKRC--- 343 (435)
T ss_pred HHHhccccCCCCccchhhhhheeccCCceeccCCceeecCCCccc-hhhhhcccccccccCccchHH----HHHHHh---
Confidence 999999999999999999999999999999999999998877665 444444433332223333333 233333
Q ss_pred ChhhhhhhhccCCCCCcHHHHHHHHHHHh----cCC--cHHHHHHHHHHHHHcCCCCceeccCCC
Q 017100 317 GITALQNRYKIDMDGTCGKTFVQKLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPP 375 (377)
Q Consensus 317 ~~~~l~~~y~i~~~~~~~~~~l~~~a~~~----~~g--D~~~Aa~~il~d~~~Gklg~~~ld~pp 375 (377)
..+.+...|.++- .....+|++.+|+++ +|| |.+.||+.||+||+.|||+|||+ ||
T Consensus 344 ~~e~~~~~Y~~~~-~~~~~~Fl~~~ar~~G~~~kGG~pd~~~AA~~vl~Dw~~Gki~y~~~--pp 405 (435)
T KOG2484|consen 344 SKESRSVLYNIPS-IRATDDFLEKFARRRGLLLKGGIPDVNAAAFAVLNDWRTGKIGYYTL--PP 405 (435)
T ss_pred hHHHHHHHhcCCC-cchHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHhhccCceeeeeC--CC
Confidence 2356778888873 334568888888753 566 99999999999999999999996 55
No 5
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=100.00 E-value=5e-41 Score=311.87 Aligned_cols=278 Identities=29% Similarity=0.436 Sum_probs=214.7
Q ss_pred EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHH
Q 017100 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWA 169 (377)
Q Consensus 90 ~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~ 169 (377)
-++|-..-.|+.||||||.++.+.+++.+..+|+|+||.|||.|++++++.+.+.+..+++|||+||+||++..+.....
T Consensus 16 ~~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~i 95 (335)
T KOG2485|consen 16 AVIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKII 95 (335)
T ss_pred cccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHH
Confidence 35666666789999999999999999999999999999999999999999999999999999999999999987777777
Q ss_pred HHHHHcCC-eEEEeeCccC--CCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhh-----cCC
Q 017100 170 TYFAKQGT-KVIFSNGQLG--MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL-----KRR 241 (377)
Q Consensus 170 ~~~~~~g~-~vi~iSa~~g--~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~-----~~~ 241 (377)
+++..++. .+++.++... .++..+...+..+..+....- +..+...+|++||.||||||||||++. .++
T Consensus 96 q~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~i---rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k 172 (335)
T KOG2485|consen 96 QYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFI---RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKK 172 (335)
T ss_pred HHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhh---cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhcc
Confidence 88776653 3344444433 335555555544433322111 112346789999999999999999986 346
Q ss_pred ceeccCCCCceeEEEE-EEe--CCceEEEcCCccccCCCCcHHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCCCh
Q 017100 242 MCPAAPRPGVTRVLKW-VRF--GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGI 318 (377)
Q Consensus 242 ~~~v~~~pgtT~~~~~-~~~--~~~~~l~DTPG~i~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~ 318 (377)
.+.|++.||+|+.++. +++ ...++++||||++.|.+.+.+.+++||+|++++++.++++.+|+|+++.++++..+.
T Consensus 173 ~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~~~~- 251 (335)
T KOG2485|consen 173 AARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHSDFS- 251 (335)
T ss_pred ceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccCcch-
Confidence 7889999999999875 666 456999999999999999999999999999999999999999999999999986432
Q ss_pred hhhhhhhccCC-CCCcHHHHHHHHHHHh--------cCC---------cHHHHHHHHHHHHHcCCCCceeccC
Q 017100 319 TALQNRYKIDM-DGTCGKTFVQKLALHL--------FNG---------DTHQAAFRILTDFRKGKFGWISLER 373 (377)
Q Consensus 319 ~~l~~~y~i~~-~~~~~~~~l~~~a~~~--------~~g---------D~~~Aa~~il~d~~~Gklg~~~ld~ 373 (377)
..+-++... ..++.+.-+..++.+. ..| .+-.+|+.+++-||+|.+|...++.
T Consensus 252 --y~~~l~~~~~~~dd~~~nl~~l~v~~~~~~k~s~fdg~~~~ei~~~~~ln~~e~~l~~~rsg~l~~~~ln~ 322 (335)
T KOG2485|consen 252 --YVKDLKPGSTPADDIEQNLAVLAVRRTKNEKVSAFDGNNKLEIEQPNLLNLARFFLATFRSGLLGPEELNY 322 (335)
T ss_pred --hHHHhccCCCccccHHHHHHHHHHHHHhcceeeEecCCceeEEechHHHHHHHHHHHHHHhccccceeecc
Confidence 222333321 1223344444555432 112 3778999999999999999776654
No 6
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=313.24 Aligned_cols=253 Identities=28% Similarity=0.478 Sum_probs=205.0
Q ss_pred hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEE
Q 017100 105 GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180 (377)
Q Consensus 105 Gh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi 180 (377)
|+..+++.++.++||.+|+|+.|+|||+|.++++..++.++. .+.+|+|+||+||++......|...+.+....+.
T Consensus 198 GQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiA 277 (572)
T KOG2423|consen 198 GQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIA 277 (572)
T ss_pred cchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCccee
Confidence 557899999999999999999999999999999999999986 5678999999999999999999999988766665
Q ss_pred EeeC-ccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE
Q 017100 181 FSNG-QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (377)
Q Consensus 181 ~iSa-~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (377)
|.++ .+..|-..|.++++++.+-.. ....+.|++||||||||||+||+|..++.|.|+++||-|+-.|.+.
T Consensus 278 fHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt 349 (572)
T KOG2423|consen 278 FHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT 349 (572)
T ss_pred eehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH
Confidence 5433 344566677777777754321 1235789999999999999999999999999999999999999999
Q ss_pred eCCceEEEcCCccccCCCCcHHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCCChhhhhhhhccCCCCCcHHHHHH
Q 017100 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (377)
Q Consensus 260 ~~~~~~l~DTPG~i~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~ 339 (377)
+-+.|+||||||++.+.-..... +.+.|.+ ++....+.-+|+=.+|.|. .++.|...|+|+ ...+..+|++
T Consensus 350 LmkrIfLIDcPGvVyps~dset~---ivLkGvV--RVenv~~pe~yi~~vl~R~---k~ehl~rtYkI~-~w~d~~dfle 420 (572)
T KOG2423|consen 350 LMKRIFLIDCPGVVYPSSDSETD---IVLKGVV--RVENVKNPEDYIDGVLERC---KPEHLSRTYKIS-GWNDSTDFLE 420 (572)
T ss_pred HHhceeEecCCCccCCCCCchHH---HHhhcee--eeeecCCHHHHHHHHHHhh---hHHHHHhhhCCC-ccccHHHHHH
Confidence 99999999999999875433222 1222333 3334445566666667764 568899999997 3456789999
Q ss_pred HHHHH----hcCC--cHHHHHHHHHHHHHcCCCCceeccCCCC
Q 017100 340 KLALH----LFNG--DTHQAAFRILTDFRKGKFGWISLERPPR 376 (377)
Q Consensus 340 ~~a~~----~~~g--D~~~Aa~~il~d~~~Gklg~~~ld~pp~ 376 (377)
++|.+ +||| |+...|+++|+||.+|||+||. .||.
T Consensus 421 ~La~k~GkLlKGGEPd~~~vsKmvLnDwqRGkiP~FV--pPp~ 461 (572)
T KOG2423|consen 421 KLAIKQGKLLKGGEPDLVVVSKMVLNDWQRGKIPFFV--PPPG 461 (572)
T ss_pred HHHHHhCccccCCCCchhHHHHHHhhHhhcCCCceec--CCCc
Confidence 99976 4676 9999999999999999999998 4653
No 7
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=322.92 Aligned_cols=302 Identities=22% Similarity=0.327 Sum_probs=210.2
Q ss_pred eecCCCCCCCccccchhhhcccccCCcEEEEcCCCCCcC------CCc-hHHHHHHHHHHHHhhhcCeEEEEEecCCCCC
Q 017100 63 HGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQ------WYP-GHIAKTEKELKDQLKLMDVVIEVRDARIPLS 135 (377)
Q Consensus 63 ~~~~~~~~~~~ig~gk~E~~~~~~~~d~vi~d~~L~~~q------w~P-Gh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~ 135 (377)
.....|.+..|--..-.|++....+-.+.-|...|...| .-| .+--.++++++++++++|+|+.|+|||+|..
T Consensus 110 ~~L~iPRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~Lqe~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPll 189 (562)
T KOG1424|consen 110 SRLDIPRRPPWTLEMSKEELDRQEKEAFLEWRRKLASLQENEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLL 189 (562)
T ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccc
Confidence 334556555555555445544443333444444433322 001 1123579999999999999999999999999
Q ss_pred CCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccC----CC--chh----------hhh
Q 017100 136 TTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG----MG--TMK----------LSR 195 (377)
Q Consensus 136 ~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g----~g--i~~----------L~~ 195 (377)
.+++.++++.. .|..++++||+||++++.+..|.+||++.++.++|.||... .+ +.+ ...
T Consensus 190 fr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~ 269 (562)
T KOG1424|consen 190 FRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALG 269 (562)
T ss_pred cCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhcc
Confidence 99999999986 47789999999999999999999999999999999998651 11 110 000
Q ss_pred ---------HHHHhh---hhhhhhhccc----------C-CCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCce
Q 017100 196 ---------LAKALA---SDVNVKRRSK----------G-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (377)
Q Consensus 196 ---------~l~~l~---~~~~~~~~~~----------~-~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT 252 (377)
.+.+.. .+....++.+ + .....++|++||||||||||+||+|.|++++.|+.+||.|
T Consensus 270 ~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkT 349 (562)
T KOG1424|consen 270 AIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKT 349 (562)
T ss_pred ccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCc
Confidence 000000 0000000000 0 0112489999999999999999999999999999999999
Q ss_pred eEEEEEEeCCceEEEcCCccccCCCCcHHHHHHHHHhccccccCcChhHHHHHH--HH-HHHcCCCCChhhhhhhhccC-
Q 017100 253 RVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAIL--VQ-MLARIPTVGITALQNRYKID- 328 (377)
Q Consensus 253 ~~~~~~~~~~~~~l~DTPG~i~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~l--l~-~l~~~~~~~~~~l~~~y~i~- 328 (377)
+++|++.+...+.|+||||++.|.+......+ +++ .+++++++.++. +. +..++ ....|...|+..
T Consensus 350 KHFQTi~ls~~v~LCDCPGLVfPSf~~~r~em---vl~----GiLPIDQmrd~~~~~~llaerI---P~~~Le~~Y~~k~ 419 (562)
T KOG1424|consen 350 KHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEM---VLN----GILPIDQLRDHYGAVGLLAERI---PRHVLERLYGHKP 419 (562)
T ss_pred ceeEEEEcCCCceecCCCCccccCCCchHHHH---HHh----cCccHHHhhcccchHHHHHHhc---CHHHHHHHhCCCc
Confidence 99999999999999999999999876533222 222 355666666543 22 23444 356788888521
Q ss_pred ------CCCCcHHHHHHHHHHHh-----cC-CcHHHHHHHHHHHHHcCCCCceeccCCCC
Q 017100 329 ------MDGTCGKTFVQKLALHL-----FN-GDTHQAAFRILTDFRKGKFGWISLERPPR 376 (377)
Q Consensus 329 ------~~~~~~~~~l~~~a~~~-----~~-gD~~~Aa~~il~d~~~Gklg~~~ld~pp~ 376 (377)
-.+.+..+++..+|... ++ .|..||||.||+||.+|||.|+. .||+
T Consensus 420 ~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL~~~~--~PPg 477 (562)
T KOG1424|consen 420 REDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKLLYCF--PPPG 477 (562)
T ss_pred ccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCeeeeee--CCCC
Confidence 12246788999999763 22 39999999999999999998887 5775
No 8
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=3.2e-40 Score=317.57 Aligned_cols=309 Identities=19% Similarity=0.170 Sum_probs=211.5
Q ss_pred cccccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhh---cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHH-
Q 017100 42 SSSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK- 115 (377)
Q Consensus 42 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~ig~gk~E~---~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~- 115 (377)
..+|+|+..||++||++| .++|+|.+|||+||||+||+|+ .++..++|++|||++|+|+| .+|+++.+.
T Consensus 19 ~~~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~~LsP~Q-----~~NLe~~l~~ 93 (411)
T COG2262 19 EESLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDHELSPSQ-----LRNLEKELGV 93 (411)
T ss_pred hhhHHHHHHHHHHcCCeEeeeEEEeccCCCcceecCcchHHHHHHHHHhcCCCEEEECCcCCHHH-----HHHHHHHHCC
Confidence 359999999999999999 8999999999999999999966 67778999999999999999 999999998
Q ss_pred HHhhhcCeEEEEEecCC--CCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhh
Q 017100 116 DQLKLMDVVIEVRDARI--PLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~--p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L 193 (377)
++|||+.+||+||.-|+ ..+..+.+++++.+..|++. ..| ..+.+.|..+ +..|.|..++
T Consensus 94 kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~-------------~~~-~~l~~~Gggi----G~rGpGE~~l 155 (411)
T COG2262 94 KVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLV-------------GSG-SHLSRLGGGI----GFRGPGETQL 155 (411)
T ss_pred EEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhH-------------hhh-hhcccccCCC----CCCCCCchHH
Confidence 88999999999997655 44555666777777777763 334 3444455333 3446665543
Q ss_pred --------------hhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE
Q 017100 194 --------------SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (377)
Q Consensus 194 --------------~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (377)
++.++.+.+.+...|++|. ....+.|++|||||+|||||+|+|++. .+.+.++.|+|+|++.++
T Consensus 156 E~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~-~~~~p~vaLvGYTNAGKSTL~N~LT~~-~~~~~d~LFATLdpttR~ 233 (411)
T COG2262 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRS-RSGIPLVALVGYTNAGKSTLFNALTGA-DVYVADQLFATLDPTTRR 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCCeEEEEeeccccHHHHHHHHhcc-CeeccccccccccCceeE
Confidence 3333334333333333333 234568999999999999999999964 578999999999987766
Q ss_pred e----CCceEEEcCCccccCCCCcHHHHHHHHHhccc----cccCcChhHH-----HHHHHHHHHcCCCCChhhhhhhhc
Q 017100 260 F----GKDLEFLDSPGIIPMRISDQAAAIKLAICDDI----GERSYDVADV-----AAILVQMLARIPTVGITALQNRYK 326 (377)
Q Consensus 260 ~----~~~~~l~DTPG~i~~~~~~~~~~~~l~~~~~i----~~~~~~~~~~-----~~~ll~~l~~~~~~~~~~l~~~y~ 326 (377)
+ +..++|.||+|||...++....||+-.+-... .-+++|.++. ..-+..+|..........+...+|
T Consensus 234 ~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NK 313 (411)
T COG2262 234 IELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNK 313 (411)
T ss_pred EEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEec
Confidence 4 35799999999999999999999996543221 1122222221 222334444443223444556666
Q ss_pred cCCCCC-cHHHHHHHHHH-H----hcCCcHHHHHHHHHHHHHcCCCCceeccCCC
Q 017100 327 IDMDGT-CGKTFVQKLAL-H----LFNGDTHQAAFRILTDFRKGKFGWISLERPP 375 (377)
Q Consensus 327 i~~~~~-~~~~~l~~~a~-~----~~~gD~~~Aa~~il~d~~~Gklg~~~ld~pp 375 (377)
+|.-.+ .....+....- . -+.|+--..-+..|.+...+....++++.|+
T Consensus 314 iD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~ 368 (411)
T COG2262 314 IDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPY 368 (411)
T ss_pred ccccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence 663211 11122222110 0 0223222344555667777777888888776
No 9
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=100.00 E-value=1.4e-32 Score=243.31 Aligned_cols=171 Identities=47% Similarity=0.907 Sum_probs=144.7
Q ss_pred CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEE
Q 017100 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 181 (377)
Q Consensus 102 w~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~ 181 (377)
||||||+++++++.+.++++|+|++|+|++.|....+..+...+.++|.++|+||+||.++.....|.++++..+..+++
T Consensus 1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF 80 (171)
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999998887777777777789999999999998776666788888776778899
Q ss_pred eeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeC
Q 017100 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG 261 (377)
Q Consensus 182 iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~ 261 (377)
+|++++.|+++|.+.+.+........ +..+..+..++++++|.||||||||+|+|.+...+.+++.||+|++.+.+.++
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~ 159 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDIEKL-KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS 159 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHHhhh-hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec
Confidence 99999999999988877654321111 11222344578999999999999999999988777899999999999998887
Q ss_pred CceEEEcCCccc
Q 017100 262 KDLEFLDSPGII 273 (377)
Q Consensus 262 ~~~~l~DTPG~i 273 (377)
..+.++||||++
T Consensus 160 ~~~~~iDtpG~~ 171 (171)
T cd01856 160 PGIYLLDTPGIL 171 (171)
T ss_pred CCEEEEECCCCC
Confidence 789999999984
No 10
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.97 E-value=1.4e-32 Score=268.91 Aligned_cols=218 Identities=22% Similarity=0.257 Sum_probs=158.1
Q ss_pred ccccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhh---cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHH-H
Q 017100 43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D 116 (377)
Q Consensus 43 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~ig~gk~E~---~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~-~ 116 (377)
.+|+|+..||+|||++| +++|++.+|||+||+|+||+|+ ++...++|++|||++|+|+| ++|+++.+. +
T Consensus 17 ~~~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q-----~~nl~~~~~~~ 91 (351)
T TIGR03156 17 ESLEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELSPSQ-----ERNLEKALGCR 91 (351)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCCHHH-----HHHHHHHhCCc
Confidence 57999999999999999 8999999999999999999977 56678999999999999999 999999998 9
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHH--HHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCch---
Q 017100 117 QLKLMDVVIEVRDARIPLSTTHPL--MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM--- 191 (377)
Q Consensus 117 ~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~--- 191 (377)
++||+.+||+||..|+.......+ ++++.+..|+++ ..|.+ +.+.+..+- ..|.|..
T Consensus 92 v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~-------------~~~~~-l~~~~~~i~----~~g~gE~~~~ 153 (351)
T TIGR03156 92 VIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLV-------------GGWTH-LSRQGGGIG----TRGPGETQLE 153 (351)
T ss_pred ccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhh-------------hhHHH-HHhhcCCCC----CCCCChhHHH
Confidence 999999999999888765544443 444445555542 44544 333332111 1233322
Q ss_pred -----------hhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE-
Q 017100 192 -----------KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR- 259 (377)
Q Consensus 192 -----------~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~- 259 (377)
+|++.++++.......+..| .....++|++|||||||||||+|+|++.+ +.+++.||+|+++....
T Consensus 154 ~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r-~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i 231 (351)
T TIGR03156 154 TDRRLIRERIAQLKKELEKVEKQRERQRRRR-KRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRL 231 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEE
Confidence 22223333322222222222 11245789999999999999999999876 77899999999976543
Q ss_pred -e--CCceEEEcCCccccCCCCcHHHHHH
Q 017100 260 -F--GKDLEFLDSPGIIPMRISDQAAAIK 285 (377)
Q Consensus 260 -~--~~~~~l~DTPG~i~~~~~~~~~~~~ 285 (377)
+ +..+.++|||||+...+++...+++
T Consensus 232 ~~~~~~~i~l~DT~G~~~~l~~~lie~f~ 260 (351)
T TIGR03156 232 DLPDGGEVLLTDTVGFIRDLPHELVAAFR 260 (351)
T ss_pred EeCCCceEEEEecCcccccCCHHHHHHHH
Confidence 3 3478999999998655566555554
No 11
>PRK11058 GTPase HflX; Provisional
Probab=99.97 E-value=2.7e-32 Score=272.85 Aligned_cols=218 Identities=18% Similarity=0.219 Sum_probs=159.7
Q ss_pred ccccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhh---cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHH-H
Q 017100 43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D 116 (377)
Q Consensus 43 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~ig~gk~E~---~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~-~ 116 (377)
.+|+|+..||+|||++| .++|+|.+|||+||+|+||+|+ +++..++|++|||++|+|+| .+|+++.+. +
T Consensus 25 ~~~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~lsp~q-----~~nle~~~~~~ 99 (426)
T PRK11058 25 EDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQ-----ERNLERLCECR 99 (426)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCCCCHHH-----HHHHHHHHCCe
Confidence 37999999999999999 8999999999999999999977 66778999999999999999 999999998 8
Q ss_pred HhhhcCeEEEEEecCCCCCC--CcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhh
Q 017100 117 QLKLMDVVIEVRDARIPLST--THPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (377)
Q Consensus 117 ~i~~aDlIL~V~Dar~p~~~--~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (377)
++||+.+||+||..|+.... .+.+++++.+..|++. ..|.. +.++|..+ +..|.|..++.
T Consensus 100 v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~-------------~~~~~-l~~~~gg~----g~~g~ge~~~e 161 (426)
T PRK11058 100 VIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLV-------------RGWTH-LERQKGGI----GLRGPGETQLE 161 (426)
T ss_pred EecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhh-------------ccccc-hhhhcCCC----CCCCCChhHhH
Confidence 99999999999987765444 4455667777777763 33433 33334322 23466665432
Q ss_pred --------------hHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe
Q 017100 195 --------------RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260 (377)
Q Consensus 195 --------------~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~ 260 (377)
+.++++.......+..|. ....++|++|||||||||||+|+|++.+ ..+++.||+|++.....+
T Consensus 162 ~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~-~~~~p~ValVG~~NaGKSSLlN~Lt~~~-~~v~~~~~tTld~~~~~i 239 (426)
T PRK11058 162 TDRRLLRNRIVQILSRLERVEKQREQGRRARI-KADVPTVSLVGYTNAGKSTLFNRITEAR-VYAADQLFATLDPTLRRI 239 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-hcCCCEEEEECCCCCCHHHHHHHHhCCc-eeeccCCCCCcCCceEEE
Confidence 222222222111111111 1123579999999999999999999866 458999999999765433
Q ss_pred --C--CceEEEcCCccccCCCCcHHHHHH
Q 017100 261 --G--KDLEFLDSPGIIPMRISDQAAAIK 285 (377)
Q Consensus 261 --~--~~~~l~DTPG~i~~~~~~~~~~~~ 285 (377)
+ ..+.++|||||+...+++...+|+
T Consensus 240 ~l~~~~~~~l~DTaG~~r~lp~~lve~f~ 268 (426)
T PRK11058 240 DVADVGETVLADTVGFIRHLPHDLVAAFK 268 (426)
T ss_pred EeCCCCeEEEEecCcccccCCHHHHHHHH
Confidence 2 368899999997655556555554
No 12
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.96 E-value=2.3e-29 Score=219.46 Aligned_cols=151 Identities=31% Similarity=0.542 Sum_probs=128.3
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEeeCccCC
Q 017100 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM 188 (377)
Q Consensus 114 l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g-~~vi~iSa~~g~ 188 (377)
+++.++.+|+|++|+|++.|....+..+.+.+. ++|+++|+||+||.++++...|..++.+.. ..++++|++.+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 567899999999999999998888888887764 389999999999998887788988887643 235778999999
Q ss_pred CchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEc
Q 017100 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD 268 (377)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~D 268 (377)
|++.|.+.+.++.... + .....+|+++|.||||||||||+|.+.+.+.+++.||+|++.+++.++.+++|+|
T Consensus 82 ~~~~L~~~l~~~~~~~---~-----~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liD 153 (157)
T cd01858 82 GKGSLIQLLRQFSKLH---S-----DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLID 153 (157)
T ss_pred cHHHHHHHHHHHHhhh---c-----cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEE
Confidence 9999888887664321 0 1134689999999999999999999999999999999999999999988899999
Q ss_pred CCcc
Q 017100 269 SPGI 272 (377)
Q Consensus 269 TPG~ 272 (377)
|||+
T Consensus 154 tPGi 157 (157)
T cd01858 154 CPGV 157 (157)
T ss_pred CcCC
Confidence 9997
No 13
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=9e-28 Score=205.85 Aligned_cols=136 Identities=34% Similarity=0.617 Sum_probs=122.4
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcc
Q 017100 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL 186 (377)
Q Consensus 111 ~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~ 186 (377)
++++.+.++++|+|++|+|++.|.+..+.++.+++. ++|+++|+||+||.+++....|.+++++.+..++++|+++
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 467788999999999999999999988888888763 7899999999999988887889999988888999999987
Q ss_pred CCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEE
Q 017100 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEF 266 (377)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l 266 (377)
+.+ +++++|.||||||||+|+|++.+...++..+|+|++.+++.++.++++
T Consensus 82 ~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 132 (141)
T cd01857 82 ENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITL 132 (141)
T ss_pred CCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEE
Confidence 643 489999999999999999999888889999999999999999889999
Q ss_pred EcCCccccC
Q 017100 267 LDSPGIIPM 275 (377)
Q Consensus 267 ~DTPG~i~~ 275 (377)
+|||||+.|
T Consensus 133 ~DtpG~~~p 141 (141)
T cd01857 133 CDCPGLVFP 141 (141)
T ss_pred EECCCcCCC
Confidence 999999865
No 14
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.95 E-value=1.2e-27 Score=211.79 Aligned_cols=143 Identities=37% Similarity=0.636 Sum_probs=113.4
Q ss_pred CeEEEEEecCCCCCCCcHHHHHH--h--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCC--Cc-----
Q 017100 122 DVVIEVRDARIPLSTTHPLMDQW--L--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM--GT----- 190 (377)
Q Consensus 122 DlIL~V~Dar~p~~~~~~~l~~~--l--~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~--gi----- 190 (377)
|+|++|+|+|.|.++.++++.+. + .++|+++|+||+||++++....|.+++++....+.|.|+.... ++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 89999999999999999998888 3 4789999999999999999999999998876666565543321 11
Q ss_pred ------------------hhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCce
Q 017100 191 ------------------MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (377)
Q Consensus 191 ------------------~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT 252 (377)
++|.+.++++. .++.....++++++|+||||||||||+|++++.+.+++.||+|
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T 152 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYS--------RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT 152 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHh--------hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE
Confidence 11111111111 1112234578999999999999999999998888999999999
Q ss_pred eEEEEEEeCCceEEEcCCcc
Q 017100 253 RVLKWVRFGKDLEFLDSPGI 272 (377)
Q Consensus 253 ~~~~~~~~~~~~~l~DTPG~ 272 (377)
++.+++.++.++.|+||||+
T Consensus 153 ~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 153 KSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cceEEEEeCCCEEEEECcCC
Confidence 99999999889999999997
No 15
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.95 E-value=4.2e-27 Score=204.84 Aligned_cols=151 Identities=32% Similarity=0.512 Sum_probs=121.4
Q ss_pred CeEEEEEecCCCCCCCcHHHH-HHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHc-CCeEEEeeCccCCCchhhhhHH
Q 017100 122 DVVIEVRDARIPLSTTHPLMD-QWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 122 DlIL~V~Dar~p~~~~~~~l~-~~l--~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~l 197 (377)
|++++|+|+++|.+..+..+. ..+ .++|.++|+||+||+++++...|..++++. +..++++|++++.|++.|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 799999999999988888777 343 378999999999999887777887666544 5678999999999999988776
Q ss_pred HHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCcc
Q 017100 198 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (377)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~ 272 (377)
.+...........+.......+++++|+||||||||+|+|++...+.+++.||||++.+++.++.++.|+|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 543211111111112223467899999999999999999999888889999999999999999889999999997
No 16
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.93 E-value=8.6e-25 Score=190.22 Aligned_cols=149 Identities=34% Similarity=0.553 Sum_probs=122.8
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCch
Q 017100 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (377)
Q Consensus 114 l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (377)
++.+++++|++++|+|++.|....+.++..++ .++|+++|+||+|+.+......|..+....+..++++|++++.|++
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~ 85 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTK 85 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHH
Confidence 34566779999999999998877777776654 3789999999999987766666665444556788999999999999
Q ss_pred hhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCc
Q 017100 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271 (377)
Q Consensus 192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG 271 (377)
+|.+.+.++.+.. ....+++++|+||||||||+|+|.+.....+++.+|+|++.+.+..+.++.++||||
T Consensus 86 ~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 86 ILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred HHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 9988887765421 134578999999999999999999877778899999999999888888899999999
Q ss_pred c
Q 017100 272 I 272 (377)
Q Consensus 272 ~ 272 (377)
+
T Consensus 156 i 156 (156)
T cd01859 156 V 156 (156)
T ss_pred C
Confidence 7
No 17
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.93 E-value=2.8e-25 Score=199.64 Aligned_cols=150 Identities=31% Similarity=0.389 Sum_probs=118.1
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH----HHHHHHH--HHHcC---CeEE
Q 017100 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWATY--FAKQG---TKVI 180 (377)
Q Consensus 110 ~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~----~~~~~~~--~~~~g---~~vi 180 (377)
+...+.++++++|+|++|+|++++.......+.....++|+++|+||+|+.+.+. ...|... ++..+ ..++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence 4666778899999999999999987777766644445789999999999985432 3344411 12233 2688
Q ss_pred EeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCC--------ceeccCCCCce
Q 017100 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVT 252 (377)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~--------~~~v~~~pgtT 252 (377)
++|+++|.|+++|.+.+.+..+ ...+++++|.||||||||||+|.+.. .+.++..||||
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l~-------------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT 170 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLAK-------------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT 170 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHhh-------------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee
Confidence 9999999999998887766543 12368999999999999999999743 35678999999
Q ss_pred eEEEEEEeCCceEEEcCCcc
Q 017100 253 RVLKWVRFGKDLEFLDSPGI 272 (377)
Q Consensus 253 ~~~~~~~~~~~~~l~DTPG~ 272 (377)
++.+.+.++.++.++|||||
T Consensus 171 ~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 171 LDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred eeeEEEecCCCCEEEeCcCC
Confidence 99999999878999999997
No 18
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=1.9e-24 Score=211.52 Aligned_cols=164 Identities=23% Similarity=0.270 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEee
Q 017100 107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSN 183 (377)
Q Consensus 107 ~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g-~~vi~iS 183 (377)
++...++....+++||+||+|+|++...+..+.++++++. ++|+++|+||+|-...+. ...+ |.+.| .+++.+|
T Consensus 70 ~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~--~~~e-fyslG~g~~~~IS 146 (444)
T COG1160 70 QELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE--LAYE-FYSLGFGEPVPIS 146 (444)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh--hHHH-HHhcCCCCceEee
Confidence 4666777788899999999999999999999999999886 589999999999773322 1223 34566 6789999
Q ss_pred CccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE---EEe
Q 017100 184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRF 260 (377)
Q Consensus 184 a~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~---~~~ 260 (377)
|.+|.|+.+|.+.+.+..+ ........+ ...+++|++||.||||||||+|+|+++.++.+++.||||||... .+-
T Consensus 147 A~Hg~Gi~dLld~v~~~l~-~~e~~~~~~-~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~ 224 (444)
T COG1160 147 AEHGRGIGDLLDAVLELLP-PDEEEEEEE-ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD 224 (444)
T ss_pred hhhccCHHHHHHHHHhhcC-Ccccccccc-cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC
Confidence 9999999999887766643 111111111 12478999999999999999999999999999999999999643 333
Q ss_pred CCceEEEcCCccccC
Q 017100 261 GKDLEFLDSPGIIPM 275 (377)
Q Consensus 261 ~~~~~l~DTPG~i~~ 275 (377)
+..+.++||.|+.+.
T Consensus 225 ~~~~~liDTAGiRrk 239 (444)
T COG1160 225 GRKYVLIDTAGIRRK 239 (444)
T ss_pred CeEEEEEECCCCCcc
Confidence 678999999999865
No 19
>PRK12289 GTPase RsgA; Reviewed
Probab=99.91 E-value=8.7e-24 Score=206.26 Aligned_cols=144 Identities=22% Similarity=0.311 Sum_probs=120.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCc
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi 190 (377)
..+.++|.|++|+|+.+|... ...+++++ .+.|.++|+||+||++..+...|.+.+...|+.++++|++++.|+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI 163 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL 163 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence 458999999999999876432 22455554 378999999999999887778898888888999999999999998
Q ss_pred hhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCC-------ceeEEEEEEeCCc
Q 017100 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKD 263 (377)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~~~ 263 (377)
++|.+.+.. ..++|+|.||||||||||+|.+.....+++.+| ||++.+++.+..+
T Consensus 164 ~eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g 225 (352)
T PRK12289 164 EALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG 225 (352)
T ss_pred HHHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC
Confidence 877665421 137999999999999999999988889999988 9999999999766
Q ss_pred eEEEcCCccccCCCC
Q 017100 264 LEFLDSPGIIPMRIS 278 (377)
Q Consensus 264 ~~l~DTPG~i~~~~~ 278 (377)
.+|+|||||..+.+.
T Consensus 226 ~~liDTPG~~~~~l~ 240 (352)
T PRK12289 226 GLLADTPGFNQPDLD 240 (352)
T ss_pred cEEEeCCCccccccc
Confidence 799999999877653
No 20
>PRK13796 GTPase YqeH; Provisional
Probab=99.91 E-value=1.7e-23 Score=206.26 Aligned_cols=147 Identities=26% Similarity=0.342 Sum_probs=118.6
Q ss_pred HHHhhhcC-eEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCH----HHHHHHHHHH-HHcCC---eEEEeeCc
Q 017100 115 KDQLKLMD-VVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYF-AKQGT---KVIFSNGQ 185 (377)
Q Consensus 115 ~~~i~~aD-lIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~----~~~~~~~~~~-~~~g~---~vi~iSa~ 185 (377)
.+.+...| +|++|+|+.+..++..+++.++..++++++|+||+||.++ +....|...+ +..|. .++++|++
T Consensus 63 l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk 142 (365)
T PRK13796 63 LNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQ 142 (365)
T ss_pred HHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECC
Confidence 33344444 9999999999988888899888888999999999999863 3455676554 34454 68899999
Q ss_pred cCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcC-----CceeccCCCCceeEEEEEEe
Q 017100 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRF 260 (377)
Q Consensus 186 ~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~-----~~~~v~~~pgtT~~~~~~~~ 260 (377)
++.|+++|.+.+.+... ..++++||+||||||||||+|.+. +.+.++..||||++.+++.+
T Consensus 143 ~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l 208 (365)
T PRK13796 143 KGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL 208 (365)
T ss_pred CCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc
Confidence 99999988877765421 125899999999999999999853 34568999999999999999
Q ss_pred CCceEEEcCCccccC
Q 017100 261 GKDLEFLDSPGIIPM 275 (377)
Q Consensus 261 ~~~~~l~DTPG~i~~ 275 (377)
+.+..|+|||||+.+
T Consensus 209 ~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 209 DDGSFLYDTPGIIHR 223 (365)
T ss_pred CCCcEEEECCCcccc
Confidence 888899999999753
No 21
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.90 E-value=1.6e-23 Score=206.02 Aligned_cols=154 Identities=26% Similarity=0.341 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH----HHHHHHH-HHHHcCC---eE
Q 017100 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---KV 179 (377)
Q Consensus 108 ~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~----~~~~~~~-~~~~~g~---~v 179 (377)
+.+.+.+..+.+.+++|++|+|+.+...+..+++.+.+.++|+++|+||+||+++. ....|.. ++++.|. .+
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 45666677778899999999999999999988999888889999999999998643 4456653 4555564 58
Q ss_pred EEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCC-----ceeccCCCCceeE
Q 017100 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRV 254 (377)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~-----~~~v~~~pgtT~~ 254 (377)
+++|+++|.|+++|.+.+.++.. ..++++||.||||||||||+|++.. .+.+++.||||++
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~ 196 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD 196 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee
Confidence 89999999999998877765421 1369999999999999999999743 3678999999999
Q ss_pred EEEEEeCCceEEEcCCccccC
Q 017100 255 LKWVRFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 255 ~~~~~~~~~~~l~DTPG~i~~ 275 (377)
.+.+.++.++.++|||||...
T Consensus 197 ~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 197 LIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred EEEEEeCCCCEEEECCCCCCh
Confidence 999998888999999999854
No 22
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.89 E-value=4.8e-23 Score=192.49 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=116.1
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHH-HHHHHHHHHcCCeEEEeeCccCCC
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMG 189 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~-~~~~~~~~~~g~~vi~iSa~~g~g 189 (377)
..++++|.++.|+|+++|..+.+. +++++ .+.|.++|+||+||.+.... .+|.+.+.+.|+.++++|+++|.|
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g 110 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG 110 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence 468999999999999988755443 55554 37899999999999865443 467788888889999999999999
Q ss_pred chhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCC-------CceeEEEEEEeCC
Q 017100 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGK 262 (377)
Q Consensus 190 i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~~~ 262 (377)
+++|.+.+.. ..++++|.||||||||||+|.+.....+++.+ +||++.+++.+ .
T Consensus 111 i~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~ 171 (245)
T TIGR00157 111 LKELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-H 171 (245)
T ss_pred HHHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-C
Confidence 8887665421 14799999999999999999988777766654 39999999998 4
Q ss_pred ceEEEcCCccccCCCCc
Q 017100 263 DLEFLDSPGIIPMRISD 279 (377)
Q Consensus 263 ~~~l~DTPG~i~~~~~~ 279 (377)
+.+|+|||||....+.+
T Consensus 172 ~~~liDtPG~~~~~l~~ 188 (245)
T TIGR00157 172 GGLIADTPGFNEFGLWH 188 (245)
T ss_pred CcEEEeCCCccccCCCC
Confidence 66999999999876654
No 23
>PRK12288 GTPase RsgA; Reviewed
Probab=99.86 E-value=2.8e-21 Score=188.62 Aligned_cols=142 Identities=23% Similarity=0.312 Sum_probs=113.7
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHH---HHHHHHHHHHHcCCeEEEeeCccCC
Q 017100 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMA---DRNAWATYFAKQGTKVIFSNGQLGM 188 (377)
Q Consensus 117 ~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~---~~~~~~~~~~~~g~~vi~iSa~~g~ 188 (377)
+..++|.++.|++.. |..+. ..+++++ .+.|.++|+||+||++.. ....|.+.++..|+.++++|++++.
T Consensus 117 iaANvD~vlIV~s~~-p~~s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 117 IAANIDQIVIVSAVL-PELSL-NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEEccEEEEEEeCC-CCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 368899999998864 33322 2355553 268999999999998754 3467777788888999999999999
Q ss_pred CchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCC-------ceeEEEEEEeC
Q 017100 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFG 261 (377)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~ 261 (377)
|+++|.+.+.. . .++|+|.||||||||||+|.++....+++.++ ||++.+++.+.
T Consensus 195 GideL~~~L~~---k---------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~ 256 (347)
T PRK12288 195 GLEELEAALTG---R---------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP 256 (347)
T ss_pred CHHHHHHHHhh---C---------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec
Confidence 99888766532 0 26899999999999999999988888888874 89999999997
Q ss_pred CceEEEcCCccccCCCC
Q 017100 262 KDLEFLDSPGIIPMRIS 278 (377)
Q Consensus 262 ~~~~l~DTPG~i~~~~~ 278 (377)
.+..|+|||||....+.
T Consensus 257 ~~~~liDTPGir~~~l~ 273 (347)
T PRK12288 257 HGGDLIDSPGVREFGLW 273 (347)
T ss_pred CCCEEEECCCCCcccCC
Confidence 77789999999876654
No 24
>PRK00098 GTPase RsgA; Reviewed
Probab=99.84 E-value=1e-20 Score=181.76 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=113.9
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCC-CHHHHHHHHHHHHHcCCeEEEeeCccCCC
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~-~~~~~~~~~~~~~~~g~~vi~iSa~~g~g 189 (377)
..+.++|+++.|+|+.+|....+ .+++++ .+.|.++|+||+||. +......|.+.+++.|+.++++|++++.|
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 34799999999999988755433 234443 368999999999997 44455678787877889999999999999
Q ss_pred chhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCC-------ceeEEEEEEeCC
Q 017100 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGK 262 (377)
Q Consensus 190 i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~~ 262 (377)
+++|.+.+. ...++++|.||||||||||+|.+.....+++.++ ||++.+++.+..
T Consensus 155 i~~L~~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~ 216 (298)
T PRK00098 155 LDELKPLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG 216 (298)
T ss_pred HHHHHhhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC
Confidence 887765531 1258999999999999999999877777776664 899999999877
Q ss_pred ceEEEcCCccccCCC
Q 017100 263 DLEFLDSPGIIPMRI 277 (377)
Q Consensus 263 ~~~l~DTPG~i~~~~ 277 (377)
..+|+|||||....+
T Consensus 217 ~~~~~DtpG~~~~~~ 231 (298)
T PRK00098 217 GGLLIDTPGFSSFGL 231 (298)
T ss_pred CcEEEECCCcCccCC
Confidence 789999999986544
No 25
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.84 E-value=2.2e-20 Score=178.46 Aligned_cols=142 Identities=21% Similarity=0.247 Sum_probs=112.1
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCc
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi 190 (377)
.++.++|++++|+|+++|..+ ...+++++ .++|.++|+||+||.++.+...|..++.+.|+.++++|++++.|+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 358999999999999988722 22455543 378999999999998776555677767777899999999999998
Q ss_pred hhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCC-------CCceeEEEEEEeCCc
Q 017100 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKD 263 (377)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~-------pgtT~~~~~~~~~~~ 263 (377)
++|...+.. ..++++|.+|||||||||+|.+.....++.. .+||++.+++++...
T Consensus 153 ~~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~ 214 (287)
T cd01854 153 DELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG 214 (287)
T ss_pred HHHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC
Confidence 877665431 2589999999999999999998765554433 358999999999767
Q ss_pred eEEEcCCccccCC
Q 017100 264 LEFLDSPGIIPMR 276 (377)
Q Consensus 264 ~~l~DTPG~i~~~ 276 (377)
.+++|||||....
T Consensus 215 ~~liDtPG~~~~~ 227 (287)
T cd01854 215 GLLIDTPGFREFG 227 (287)
T ss_pred CEEEECCCCCccC
Confidence 7999999997654
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=1.9e-19 Score=183.50 Aligned_cols=181 Identities=22% Similarity=0.201 Sum_probs=125.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (377)
+..+.+||+...... ..+.......+....++.+|+||+|+|++++.+..+..+..++. ++|+++|+||+|+.....
T Consensus 85 ~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~ 163 (472)
T PRK03003 85 GRRFTVVDTGGWEPD-AKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA 163 (472)
T ss_pred CcEEEEEeCCCcCCc-chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch
Confidence 345778887653211 01112345555667799999999999999887766666666654 789999999999964321
Q ss_pred HHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCce
Q 017100 165 RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (377)
Q Consensus 165 ~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~ 243 (377)
...+.+ ..| ...+++||++|.|+.+|.+.+.+....... ........++|+++|.||||||||+|+|++....
T Consensus 164 --~~~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~ 237 (472)
T PRK03003 164 --DAAALW-SLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERS 237 (472)
T ss_pred --hhHHHH-hcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 111222 334 346789999999999987766543322111 1111124689999999999999999999988777
Q ss_pred eccCCCCceeEEEE--EEe-CCceEEEcCCcccc
Q 017100 244 PAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (377)
Q Consensus 244 ~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i~ 274 (377)
.+++.||||++... +.. +..+.++||||+..
T Consensus 238 ~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 238 VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred cccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 78999999998642 223 45688999999864
No 27
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=3.3e-19 Score=180.01 Aligned_cols=182 Identities=22% Similarity=0.205 Sum_probs=129.9
Q ss_pred cCCcEEEEcCCCCCcCCCch-HHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCH
Q 017100 86 LDADLYYWTKSLRPVQWYPG-HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PG-h~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~ 162 (377)
.+.++.+||+..... ... -.....++....+..+|+|++|+|++.+.+..+.++..++. ++|+++|+||+|+...
T Consensus 47 ~~~~~~liDT~G~~~--~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~ 124 (435)
T PRK00093 47 LGREFILIDTGGIEP--DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE 124 (435)
T ss_pred CCcEEEEEECCCCCC--cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc
Confidence 346788999865432 111 12334455567789999999999999887777666766664 7899999999997653
Q ss_pred HHHHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCC
Q 017100 163 ADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 163 ~~~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
+. ...+ +.+.|. .++++|+++|.|+.++.+.+.+........ ......++|+++|.||||||||+|+|++..
T Consensus 125 ~~--~~~~-~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~----~~~~~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 125 EA--DAYE-FYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEE----DEEDEPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred hh--hHHH-HHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccc----cccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 21 1122 234454 488999999999988877665422111100 002246899999999999999999999988
Q ss_pred ceeccCCCCceeEEEEEE---eCCceEEEcCCccccCC
Q 017100 242 MCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIPMR 276 (377)
Q Consensus 242 ~~~v~~~pgtT~~~~~~~---~~~~~~l~DTPG~i~~~ 276 (377)
.+.+++.+|+|++..... -+..+.++||||+....
T Consensus 198 ~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 198 RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCc
Confidence 889999999999975333 25578999999997543
No 28
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.81 E-value=1.7e-21 Score=181.97 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=156.0
Q ss_pred cccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhhcccc---cCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HH
Q 017100 44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEECDWAD---LDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQ 117 (377)
Q Consensus 44 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~ig~gk~E~~~~~---~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~-~~ 117 (377)
+|+|+-.|+.+++.-+ ..+++.-.++|++|+|+|++|+++.. .. ...+|++..++.+ ..|.+..+... ++
T Consensus 7 qleea~aLvdtl~~~nvv~t~~kpv~~~rk~~~gsGn~e~Li~~i~aa~-at~~f~nv~a~~a---~~~~ek~r~~~Vrv 82 (410)
T KOG0410|consen 7 QLEEANALVDTLQQRNVVRTWAKPVLDNRKTYIGSGNVEELIIEIFAAH-ATTKFANVQAELA---ALMYEKSRLVRVRV 82 (410)
T ss_pred HHHHHHHHHHhhccchhhhheeeeccCCcceeeecCcHHHHHHHHhcCc-cceeeecccccch---hHHHHHhhhcceee
Confidence 6889999999998776 89999999999999999999874443 23 4577887777555 11333333333 55
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhh----
Q 017100 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL---- 193 (377)
Q Consensus 118 i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L---- 193 (377)
.|+..+|+.+|.+++...+...++ .+.+.|.+ .......|...+++.|..+. |.|...+
T Consensus 83 fDr~~~vl~if~q~a~T~earlqv--alAempy~---------~~rl~r~~~hl~r~~g~~v~------gsges~id~d~ 145 (410)
T KOG0410|consen 83 FDRRHTVLQIFEQEAVTAEARLQV--ALAEMPYV---------GGRLERELQHLRRQSGGQVK------GSGESIIDRDI 145 (410)
T ss_pred ecchhhHHHHHHHHhhhHHHHHhh--hhhcCccc---------cchHHHHHHHHHhcCCCccc------CccchHhHHHH
Confidence 788888888887665433322222 22223322 22334677777776664421 3333221
Q ss_pred -----------hhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e
Q 017100 194 -----------SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F 260 (377)
Q Consensus 194 -----------~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~ 260 (377)
++.++.+.++. +.|..+.. .....|++|||||+|||||||+|+ .......++.|.|+|++... +
T Consensus 146 ~rllr~kea~lrKeL~~vrrkr-~~r~gr~~-~s~pviavVGYTNaGKsTLikaLT-~Aal~p~drLFATLDpT~h~a~L 222 (410)
T KOG0410|consen 146 RRLLRIKEAQLRKELQRVRRKR-QRRVGREG-ESSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLFATLDPTLHSAHL 222 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhcccc-CCCceEEEEeecCccHHHHHHHHH-hhhcCccchhheeccchhhhccC
Confidence 22222222222 11122211 223569999999999999999999 55678889999999986533 3
Q ss_pred --CCceEEEcCCccccCCCCcHHHHHHHHHhcc--------ccccCcC-hhHHHHHHHHHHHcCC
Q 017100 261 --GKDLEFLDSPGIIPMRISDQAAAIKLAICDD--------IGERSYD-VADVAAILVQMLARIP 314 (377)
Q Consensus 261 --~~~~~l~DTPG~i~~~~~~~~~~~~l~~~~~--------i~~~~~~-~~~~~~~ll~~l~~~~ 314 (377)
+..+++.||.||+...+..+..||...+..- +.+.+.+ .+....-+++.|+.+.
T Consensus 223 psg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~ig 287 (410)
T KOG0410|consen 223 PSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIG 287 (410)
T ss_pred CCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcC
Confidence 5678999999999999999999988554321 1112222 2334445667777653
No 29
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=5e-19 Score=178.31 Aligned_cols=181 Identities=23% Similarity=0.251 Sum_probs=132.5
Q ss_pred CCcEEEEcCCCCCcCCCch-HHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 017100 87 DADLYYWTKSLRPVQWYPG-HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA 163 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PG-h~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~ 163 (377)
+..+.+||+..-. .+.. .+....++....++.+|+|++|+|++.+....+.++.+++. ++|+++|+||+|+.+.+
T Consensus 46 ~~~~~liDTpG~~--~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 46 GREFILIDTGGIE--EDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred CeEEEEEECCCCC--CcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 4457888876531 1221 23556666778899999999999999887777777777764 78999999999997654
Q ss_pred HHHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCc
Q 017100 164 DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (377)
Q Consensus 164 ~~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~ 242 (377)
... .+ +.+.|. +++++|+++|.|+.++.+.+.+....... ........++|+++|.||||||||+|+|++...
T Consensus 124 ~~~--~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~---~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~ 197 (429)
T TIGR03594 124 AVA--AE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEE---EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEER 197 (429)
T ss_pred ccH--HH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccc---cccccCCceEEEEECCCCCCHHHHHHHHHCCCe
Confidence 321 12 335564 78999999999999887766554322111 011112457999999999999999999999888
Q ss_pred eeccCCCCceeEEEEEEe---CCceEEEcCCccccC
Q 017100 243 CPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (377)
Q Consensus 243 ~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~ 275 (377)
..+++.||||++.....+ +..+.++||||+...
T Consensus 198 ~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~ 233 (429)
T TIGR03594 198 VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRK 233 (429)
T ss_pred eecCCCCCceECcEeEEEEECCcEEEEEECCCcccc
Confidence 889999999998654332 457899999999754
No 30
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=1.6e-18 Score=184.59 Aligned_cols=184 Identities=23% Similarity=0.213 Sum_probs=126.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (377)
+..+.+||+...... ..+......++....++.+|+||+|+|++......+..+..++. ++|+++|+||+|+.....
T Consensus 322 ~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~ 400 (712)
T PRK09518 322 GTDFKLVDTGGWEAD-VEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY 400 (712)
T ss_pred CEEEEEEeCCCcCCC-CccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh
Confidence 345677887653210 11223445666677899999999999999877666666666653 789999999999865422
Q ss_pred HHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCce
Q 017100 165 RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (377)
Q Consensus 165 ~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~ 243 (377)
. ..+++ ..| ..++++||++|.|+.+|.+.+.+....... ....-.....++|+++|.||||||||+|+|++.+..
T Consensus 401 ~--~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~-~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~ 476 (712)
T PRK09518 401 D--AAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEK-TSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERA 476 (712)
T ss_pred h--HHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhcccccc-cccccCCCCCcEEEEECCCCCCHHHHHHHHhCcccc
Confidence 1 11222 233 356789999999999987766544322111 000000123478999999999999999999988777
Q ss_pred eccCCCCceeEEEEE--Ee-CCceEEEcCCccccC
Q 017100 244 PAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 244 ~v~~~pgtT~~~~~~--~~-~~~~~l~DTPG~i~~ 275 (377)
.+++.||||++.... .. +..+.++||||+...
T Consensus 477 ~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~ 511 (712)
T PRK09518 477 VVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRR 511 (712)
T ss_pred ccCCCCCCCcCcceeEEEECCCEEEEEECCCcccC
Confidence 789999999996432 22 557889999999643
No 31
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=163.63 Aligned_cols=142 Identities=24% Similarity=0.317 Sum_probs=112.8
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHH--HHHHHHHHcCCeEEEeeCccCCC
Q 017100 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMG 189 (377)
Q Consensus 117 ~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~--~~~~~~~~~g~~vi~iSa~~g~g 189 (377)
.+.+.|-++.|+.+-.|..+.+ .+++++ .+...+|++||+||++.++.. ++...++..|+.++++|++++.|
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~-~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTN-LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDG 154 (301)
T ss_pred cccccceEEEEEeccCCCCCHH-HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCccc
Confidence 3556888888888887765544 466664 377888999999999877655 57777888999999999999999
Q ss_pred chhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCC-------CceeEEEEEEeCC
Q 017100 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGK 262 (377)
Q Consensus 190 i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~~~ 262 (377)
+..|...++. -...++|.+|||||||||+|.+.....+++.. +||++..++.+..
T Consensus 155 ~~~l~~~l~~------------------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~ 216 (301)
T COG1162 155 LEELAELLAG------------------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG 216 (301)
T ss_pred HHHHHHHhcC------------------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC
Confidence 8877665321 14689999999999999999986666665542 5999999999977
Q ss_pred ceEEEcCCccccCCC
Q 017100 263 DLEFLDSPGIIPMRI 277 (377)
Q Consensus 263 ~~~l~DTPG~i~~~~ 277 (377)
+-.|+|||||....+
T Consensus 217 gG~iiDTPGf~~~~l 231 (301)
T COG1162 217 GGWIIDTPGFRSLGL 231 (301)
T ss_pred CCEEEeCCCCCccCc
Confidence 789999999987765
No 32
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=99.73 E-value=4.8e-19 Score=139.84 Aligned_cols=82 Identities=22% Similarity=0.248 Sum_probs=77.0
Q ss_pred cccccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhh---cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHH-
Q 017100 42 SSSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK- 115 (377)
Q Consensus 42 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~ig~gk~E~---~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~- 115 (377)
..+|+|+..||+|||++| +++|++++|||+||+|+||+|+ .+...++|+++||++|+|+| ++|+++.+.
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q-----~rNLe~~~~~ 81 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQ-----QRNLEKALGV 81 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHH-----HHHHHHHHCC
Confidence 358999999999999999 8999999999999999999966 66778999999999999999 999999998
Q ss_pred HHhhhcCeEEEEE
Q 017100 116 DQLKLMDVVIEVR 128 (377)
Q Consensus 116 ~~i~~aDlIL~V~ 128 (377)
+++||+.+||+||
T Consensus 82 ~V~DRt~LIL~IF 94 (95)
T PF13167_consen 82 KVIDRTQLILEIF 94 (95)
T ss_pred eeeccccHHHHHc
Confidence 8899999999998
No 33
>PRK01889 GTPase RsgA; Reviewed
Probab=99.69 E-value=9.1e-17 Score=157.91 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=106.3
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH-HHHHHHHHHHcCCeEEEeeCccCCCch
Q 017100 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTM 191 (377)
Q Consensus 118 i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (377)
+.++|.++.|+++..++.. ..+++++ .+.+.++|+||+||++..+ ...|...+ ..|++++++|++++.|++
T Consensus 110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHH
Confidence 6899999999998633322 2455654 3678899999999987532 22333333 457899999999999988
Q ss_pred hhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCC-------CCceeEEEEEEeCCce
Q 017100 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKDL 264 (377)
Q Consensus 192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~-------pgtT~~~~~~~~~~~~ 264 (377)
.|...+.. ..+++++|.||||||||+|+|.+.....++.. .++|+..++..+..+.
T Consensus 187 ~L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~ 249 (356)
T PRK01889 187 VLAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGG 249 (356)
T ss_pred HHHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCC
Confidence 87766531 12589999999999999999998655544433 2477777888887777
Q ss_pred EEEcCCccccCCCCcHHHH
Q 017100 265 EFLDSPGIIPMRISDQAAA 283 (377)
Q Consensus 265 ~l~DTPG~i~~~~~~~~~~ 283 (377)
+++|||||....+.+...+
T Consensus 250 ~l~DtpG~~~~~l~~~~~~ 268 (356)
T PRK01889 250 LLIDTPGMRELQLWDAEDG 268 (356)
T ss_pred eecCCCchhhhcccCchhh
Confidence 8999999987666554433
No 34
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.57 E-value=3.2e-15 Score=129.90 Aligned_cols=95 Identities=25% Similarity=0.314 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceec
Q 017100 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (377)
Q Consensus 166 ~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v 245 (377)
++|.+.|++.|++++++|++++.|+++|++.++. .+++++|.+|||||||||+|.+.....+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG------------------KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------------------SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------------------CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 5688889999999999999999999887765432 2589999999999999999998765555
Q ss_pred cCC-------CCceeEEEEEEeCCceEEEcCCccccCCCC
Q 017100 246 APR-------PGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278 (377)
Q Consensus 246 ~~~-------pgtT~~~~~~~~~~~~~l~DTPG~i~~~~~ 278 (377)
+.. -+||+..+++.+..+.+|+|||||....+.
T Consensus 64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp S--------------SEEEEEETTSEEEECSHHHHT--GC
T ss_pred hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccc
Confidence 432 258999999999889999999999876554
No 35
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.47 E-value=5.1e-14 Score=122.14 Aligned_cols=62 Identities=35% Similarity=0.541 Sum_probs=47.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccCCCCcH
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQ 280 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~~~~~ 280 (377)
++|++||.||||||||||+|+|.+ ..+++.||+|.+...-.+ +..+.++||||+-.......
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 479999999999999999999987 889999999999764332 56799999999976544333
No 36
>COG1159 Era GTPase [General function prediction only]
Probab=99.46 E-value=6.1e-14 Score=131.25 Aligned_cols=65 Identities=31% Similarity=0.546 Sum_probs=53.6
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEe--CCceEEEcCCccccCCCCcHHHHH
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRF--GKDLEFLDSPGIIPMRISDQAAAI 284 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~--~~~~~l~DTPG~i~~~~~~~~~~~ 284 (377)
-|++||.||||||||+|+|.|.+.+.++++|.|||+. +.+.. ..++.++|||||..++ +.....+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk-~~l~~~m 75 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK-HALGELM 75 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc-hHHHHHH
Confidence 5899999999999999999999999999999999994 43333 5679999999998773 3344443
No 37
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.2e-13 Score=130.47 Aligned_cols=66 Identities=30% Similarity=0.525 Sum_probs=55.3
Q ss_pred CCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccCCCCc
Q 017100 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISD 279 (377)
Q Consensus 213 ~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~~~~ 279 (377)
..+...+|.+.||||||||||+++|++.+ ..+++.||||+.+..-++ +..+.++||||++...+++
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E 232 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE 232 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHH
Confidence 34456789999999999999999999754 799999999999887665 3478999999999765544
No 38
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.2e-13 Score=136.22 Aligned_cols=60 Identities=35% Similarity=0.488 Sum_probs=53.3
Q ss_pred CCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e-CCceEEEcCCcccc
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~l~DTPG~i~ 274 (377)
..+++++++|.||||||||+|+|++++++.|++.||||||+-... + |-.+.|+||.|+..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCccc
Confidence 457899999999999999999999999999999999999986544 3 55789999999984
No 39
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.37 E-value=3.5e-13 Score=132.66 Aligned_cols=59 Identities=39% Similarity=0.591 Sum_probs=51.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE---EEeCCceEEEcCCccccCC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRFGKDLEFLDSPGIIPMR 276 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~---~~~~~~~~l~DTPG~i~~~ 276 (377)
..|++||.||||||||+|+|++++.+.|++.||+|||... ...+..+.++||+|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~ 65 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD 65 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC
Confidence 4699999999999999999999999999999999999643 2236779999999998644
No 40
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.36 E-value=6.5e-13 Score=109.47 Aligned_cols=58 Identities=38% Similarity=0.633 Sum_probs=49.2
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE--Ee-CCceEEEcCCccccCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~~~l~DTPG~i~~~ 276 (377)
+|+++|.||||||||||+|++.+...+++.+++|++.... .+ +..+.++|||||....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 5899999999999999999987778999999999998442 33 4567899999998653
No 41
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.35 E-value=1.1e-12 Score=116.78 Aligned_cols=60 Identities=30% Similarity=0.527 Sum_probs=54.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCC-ceeccCCCCceeEEEEEEeCCceEEEcCCccccCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~~~ 276 (377)
.+.|+++|.+|||||||||+|++++ .+++|.+||.|+.+..+.+++.+.++|-||+-.-.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAk 84 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAK 84 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCccccc
Confidence 4579999999999999999999965 58999999999999999999889999999996443
No 42
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3e-12 Score=126.33 Aligned_cols=59 Identities=37% Similarity=0.537 Sum_probs=52.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e-CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~l~DTPG~i~ 274 (377)
.++.|+|+|.||||||||+|+|.++.+..|++.||||||..... + |..++|+||.|+..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 46889999999999999999999999999999999999964333 3 66899999999987
No 43
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.17 E-value=2.3e-11 Score=115.35 Aligned_cols=57 Identities=32% Similarity=0.537 Sum_probs=47.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE-EEEe--CCceEEEcCCccccC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRF--GKDLEFLDSPGIIPM 275 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~-~~~~--~~~~~l~DTPG~i~~ 275 (377)
+|+++|+||||||||+|+|++.+...+++.|+||++.. .+.. +..+.++||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 58999999999999999999988788999999999843 2222 346899999999754
No 44
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.16 E-value=2.4e-11 Score=120.84 Aligned_cols=57 Identities=28% Similarity=0.389 Sum_probs=48.2
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe--C--CceEEEcCCccccCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--G--KDLEFLDSPGIIPMR 276 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~--~--~~~~l~DTPG~i~~~ 276 (377)
.|+|||+||||||||||+|++.+ ..+++.||||+......+ + ..+.++||||++...
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 69999999999999999999765 589999999999765333 3 359999999998653
No 45
>PTZ00258 GTP-binding protein; Provisional
Probab=99.15 E-value=3.5e-11 Score=118.84 Aligned_cols=59 Identities=36% Similarity=0.490 Sum_probs=48.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe--------------------CCceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------------~~~~~l~DTPG~i~~ 275 (377)
..++|++||+||||||||+|+|++.+ +.+++.||||++...-.+ +..+.++||||++..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45789999999999999999999765 799999999998654222 124899999999954
No 46
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.14 E-value=5.1e-11 Score=120.80 Aligned_cols=59 Identities=36% Similarity=0.487 Sum_probs=50.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e-CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~l~DTPG~i~ 274 (377)
..++|+++|+||||||||+|+|++.+...+++.||||++..... + +..+.++||||+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 45789999999999999999999887778999999999975433 3 45689999999963
No 47
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.12 E-value=4.8e-11 Score=116.65 Aligned_cols=57 Identities=40% Similarity=0.541 Sum_probs=47.8
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeC------------------CceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~------------------~~~~l~DTPG~i~~ 275 (377)
++|++||+||||||||+|+|++.+ +.+++.||||++... +.+. ..+.++||||++..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 579999999999999999999876 799999999998653 2322 24899999999964
No 48
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.11 E-value=1.1e-10 Score=105.30 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=47.3
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccC-CCCceeEEEEEEe---CCceEEEcCCccccCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~-~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~ 276 (377)
+|++||.||||||||+|+|++++.+.++. .+++|++.+.... +..+.++||||+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~ 63 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence 68999999999999999999987665553 5689988765432 5679999999998654
No 49
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.11 E-value=4.7e-11 Score=113.01 Aligned_cols=56 Identities=41% Similarity=0.511 Sum_probs=45.8
Q ss_pred eeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeCC------------------ceEEEcCCccccCC
Q 017100 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK------------------DLEFLDSPGIIPMR 276 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~------------------~~~l~DTPG~i~~~ 276 (377)
|++||+||||||||+|+|++.+. .+++.||||++... +.+.. .+.++||||++...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a 76 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 76 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC
Confidence 58999999999999999998764 89999999998654 22221 38999999999643
No 50
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.10 E-value=1.2e-10 Score=109.13 Aligned_cols=62 Identities=26% Similarity=0.527 Sum_probs=53.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccCCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 277 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~~ 277 (377)
+.+.|+++|.||||||||.|.+.|.+.+.++.++.|||+-..--+ .-++.++||||++.+..
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM 135 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence 457899999999999999999999999999999999998654333 34689999999997644
No 51
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.07 E-value=2e-10 Score=108.53 Aligned_cols=59 Identities=34% Similarity=0.505 Sum_probs=50.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE---EEEeCCceEEEcCCccccCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRFGKDLEFLDSPGIIPMR 276 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~---~~~~~~~~~l~DTPG~i~~~ 276 (377)
.-+|++||+||||||||+|+|++.+ ..+++.||||+... +.+-+-.+.++|+||++...
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCc
Confidence 4689999999999999999999865 68999999999863 33346789999999998653
No 52
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.05 E-value=1.4e-10 Score=109.08 Aligned_cols=127 Identities=25% Similarity=0.276 Sum_probs=75.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe----CCceEEEcCCccccCCCCcH----------HHHH
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPMRISDQ----------AAAI 284 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~l~DTPG~i~~~~~~~----------~~~~ 284 (377)
.|++||+||||||||+|+|+..+ .++++.+|||..++.-.+ ...+.+-|-||+|.....+. +.+-
T Consensus 198 dvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 58999999999999999999765 599999999999764332 23588999999997543221 1111
Q ss_pred HHHHhcccccc-CcChhHHHHHHHHHHHcCCC--CChhhhhhhhccCCCCCcHHHHHHHHHHHhcC
Q 017100 285 KLAICDDIGER-SYDVADVAAILVQMLARIPT--VGITALQNRYKIDMDGTCGKTFVQKLALHLFN 347 (377)
Q Consensus 285 ~l~~~~~i~~~-~~~~~~~~~~ll~~l~~~~~--~~~~~l~~~y~i~~~~~~~~~~l~~~a~~~~~ 347 (377)
.++++-++... ....-+....|.+-|+.+.. .....+...+|+|.. +....|++.++.++.+
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~-eae~~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP-EAEKNLLSSLAKRLQN 341 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch-hHHHHHHHHHHHHcCC
Confidence 12222222211 11222333344444433211 122344455677752 2335567777776543
No 53
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.04 E-value=2.2e-10 Score=107.27 Aligned_cols=61 Identities=26% Similarity=0.361 Sum_probs=51.5
Q ss_pred CCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccC
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~ 275 (377)
...++|+++|.||||||||+|+|++...+.+++..++|+..+.+.. +..+.++|||||...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 3568999999999999999999999887888888888888765543 457899999999755
No 54
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.02 E-value=3.3e-10 Score=114.48 Aligned_cols=60 Identities=38% Similarity=0.493 Sum_probs=50.5
Q ss_pred CCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e-CCceEEEcCCcccc
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~l~DTPG~i~ 274 (377)
...++|+++|.||||||||+|+|++.....+++.||||++..... + +..+.++||||+..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 356899999999999999999999887778999999999975433 3 44688999999964
No 55
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.00 E-value=4.9e-10 Score=99.46 Aligned_cols=59 Identities=31% Similarity=0.524 Sum_probs=50.8
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCC-ceeccCCCCceeEEEEEEeCCceEEEcCCccccC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~~ 275 (377)
..+|+++|.+|||||||+|+|++.. ...+++.+|+|++...+..+.++.++||||+...
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~ 77 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYA 77 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccc
Confidence 4689999999999999999999865 4567889999999887777778999999998543
No 56
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.00 E-value=4.9e-10 Score=100.33 Aligned_cols=59 Identities=32% Similarity=0.540 Sum_probs=51.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC-ceeccCCCCceeEEEEEEeCCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++++.+..+.++.++||||+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCC
Confidence 35689999999999999999999864 567888999999988877777899999999864
No 57
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.99 E-value=3.2e-10 Score=110.65 Aligned_cols=57 Identities=35% Similarity=0.443 Sum_probs=47.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe--CCceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~~~l~DTPG~i~~ 275 (377)
..|+|||+||||||||||+|++.+ ..+++.||||++++. +.. +..+.++||||++..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 369999999999999999999754 679999999999765 333 346999999999864
No 58
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.99 E-value=3.3e-10 Score=115.16 Aligned_cols=57 Identities=35% Similarity=0.470 Sum_probs=47.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e-CCceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~l~DTPG~i~~ 275 (377)
..|+|||+||||||||||+|++.+ ..+++.||||+++..-. . +..+.++||||++..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 479999999999999999999754 57899999999976533 3 346899999999854
No 59
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.98 E-value=6.9e-10 Score=105.69 Aligned_cols=57 Identities=35% Similarity=0.473 Sum_probs=48.2
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEe--CCceEEEcCCccccCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~--~~~~~l~DTPG~i~~~ 276 (377)
.|++||+||||||||||+++.. ..++++.||||+.+. .++. +..+++-|-||+|.-.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~A-kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA 221 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAA-KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA 221 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhc-CCcccCCccccccCcccEEEecCCCcEEEecCccccccc
Confidence 4899999999999999999964 479999999999964 3443 4569999999999754
No 60
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.97 E-value=4.7e-10 Score=112.39 Aligned_cols=55 Identities=33% Similarity=0.484 Sum_probs=47.5
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe----CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~l~DTPG~i~ 274 (377)
.|+|||+||||||||||+|++.+ ..+++.||||+++....+ +..+.++||||++.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 69999999999999999999765 678999999999875443 45799999999985
No 61
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.96 E-value=3.9e-09 Score=108.77 Aligned_cols=59 Identities=34% Similarity=0.549 Sum_probs=49.5
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccCCC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 277 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~~ 277 (377)
.+|+++|.||||||||+|+|+|.+ ..|+|-||+|-+...-.+ ++.+.++|.||+-.-..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 469999999999999999999865 799999999988754333 66799999999965433
No 62
>PRK15494 era GTPase Era; Provisional
Probab=98.94 E-value=1.4e-09 Score=106.51 Aligned_cols=59 Identities=31% Similarity=0.577 Sum_probs=49.0
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-CCceEEEcCCccccC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i~~ 275 (377)
..+|+++|.||||||||+|+|.+.+...+++.++||++... +.. +..+.++||||+..+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 46899999999999999999998887778899999998543 222 457899999999643
No 63
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.94 E-value=1.9e-09 Score=97.52 Aligned_cols=59 Identities=27% Similarity=0.264 Sum_probs=46.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CC-ceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~~~l~DTPG~i~~ 275 (377)
..++|+++|.+|||||||+|+|++.. ..+.+.+++|.+.....+ +. .+.++||||+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 45789999999999999999999754 466677888877543332 32 7889999999754
No 64
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.94 E-value=6.3e-10 Score=112.22 Aligned_cols=56 Identities=43% Similarity=0.631 Sum_probs=48.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
+|++||.||||||||+|+|+++..+.+++.||+|++.+...+ +..+.++||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~ 59 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE 59 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC
Confidence 489999999999999999998887789999999999765432 55789999999853
No 65
>PRK04213 GTP-binding protein; Provisional
Probab=98.94 E-value=9e-10 Score=99.33 Aligned_cols=54 Identities=37% Similarity=0.588 Sum_probs=47.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCcc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~ 272 (377)
.++|+++|.+|||||||+|+|++.. ..++..||+|++...+..+ ++.++||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCcc
Confidence 4689999999999999999999765 6788899999987766655 7899999997
No 66
>PRK00089 era GTPase Era; Reviewed
Probab=98.93 E-value=9.4e-10 Score=105.40 Aligned_cols=58 Identities=36% Similarity=0.601 Sum_probs=48.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE-EEe-C-CceEEEcCCccccCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRF-G-KDLEFLDSPGIIPMR 276 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~-~~~-~-~~~~l~DTPG~i~~~ 276 (377)
.|+++|.||||||||+|+|++.+...+++.|+||++... +.. + ..+.++||||+..+.
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 589999999999999999999888889999999998532 222 2 478999999997543
No 67
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.92 E-value=1.6e-09 Score=103.59 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=47.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE---eCCceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~---~~~~~~l~DTPG~i~~ 275 (377)
..++|+++|.|||||||++|+|+++..+.+++..++|...+... -+..+.++||||+...
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 45789999999999999999999988777777776665543222 2567999999999864
No 68
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.89 E-value=1.2e-09 Score=108.10 Aligned_cols=67 Identities=28% Similarity=0.400 Sum_probs=53.9
Q ss_pred CCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeC---CceEEEcCCccccCCCCcHH
Q 017100 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIPMRISDQA 281 (377)
Q Consensus 214 ~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~---~~~~l~DTPG~i~~~~~~~~ 281 (377)
.+...+..++|||||||||++|.++. ..+.+.+.+|||+.+-.-+++ -.+.++|||||..+..++..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtr-advevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN 234 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTR-ADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRN 234 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccc-cccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhh
Confidence 34456899999999999999999995 457899999999997654443 34679999999987776644
No 69
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.88 E-value=1.3e-09 Score=106.12 Aligned_cols=57 Identities=35% Similarity=0.496 Sum_probs=47.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeC--CceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~~~l~DTPG~i~~ 275 (377)
..|++||+||||||||||+|++.+ ..+++.||||++++. +.++ ..+.++||||++..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 369999999999999999999754 578999999998664 3333 57899999999854
No 70
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.86 E-value=1.6e-09 Score=94.46 Aligned_cols=55 Identities=33% Similarity=0.471 Sum_probs=44.0
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE--Ee-CC-ceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GK-DLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~-~~~l~DTPG~i~ 274 (377)
.|++||.+|||||||+|+|++.. ..++..||+|++.... .. +. .+.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 48999999999999999999754 4788889999875432 22 33 788999999863
No 71
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.86 E-value=2.7e-09 Score=109.14 Aligned_cols=57 Identities=39% Similarity=0.530 Sum_probs=48.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
.++|++||.||||||||+|+|++.....+++.||+|++...... +..+.++||||+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence 46899999999999999999998776778999999999765433 4568899999986
No 72
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.86 E-value=2.1e-09 Score=107.06 Aligned_cols=57 Identities=30% Similarity=0.353 Sum_probs=45.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE--Ee-------------------------CCceEEEcCC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-------------------------GKDLEFLDSP 270 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-------------------------~~~~~l~DTP 270 (377)
++|++||+||||||||+|+|++.. +.+++.||+|++...- .+ .-.+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 479999999999999999999764 6789999999986531 11 1236799999
Q ss_pred ccccC
Q 017100 271 GIIPM 275 (377)
Q Consensus 271 G~i~~ 275 (377)
|++..
T Consensus 81 Gl~~g 85 (396)
T PRK09602 81 GLVPG 85 (396)
T ss_pred CcCCC
Confidence 99864
No 73
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.83 E-value=3.3e-09 Score=92.34 Aligned_cols=55 Identities=40% Similarity=0.609 Sum_probs=44.6
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
+|+++|+||||||||+|+|++.. ..+++.+++|++...... +..+.++||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 68999999999999999999764 456778899988765433 24789999999853
No 74
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.82 E-value=4.6e-09 Score=89.71 Aligned_cols=58 Identities=36% Similarity=0.483 Sum_probs=48.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~ 275 (377)
++|+++|.+|+|||||+|+|++.....+++.+++|++...... +..+.++||||+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 4799999999999999999998876778899999988654332 346889999998643
No 75
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.80 E-value=3.9e-09 Score=106.76 Aligned_cols=57 Identities=44% Similarity=0.638 Sum_probs=48.9
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
++|++||.||||||||+|+|++...+.+++.||+|++.....+ +..+.++||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC
Confidence 3699999999999999999998877789999999998754333 56789999999975
No 76
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.79 E-value=3.9e-09 Score=90.30 Aligned_cols=55 Identities=45% Similarity=0.663 Sum_probs=45.1
Q ss_pred eEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccC
Q 017100 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (377)
Q Consensus 221 ~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~ 275 (377)
+++|.+|||||||+|+|.+.....+++.+++|++...... +..+.++||||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence 4799999999999999998776678889999988654333 456889999999653
No 77
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.78 E-value=5.6e-09 Score=111.80 Aligned_cols=57 Identities=42% Similarity=0.578 Sum_probs=49.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
.+|+++|.||||||||+|+|++.+...+++.||+|++...... +..+.++||||+..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 335 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence 5799999999999999999998877789999999999765433 45789999999863
No 78
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.78 E-value=1.2e-08 Score=105.22 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=48.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCC-CCceeEEEEEE--eCCceEEEcCCccccCCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKWVR--FGKDLEFLDSPGIIPMRI 277 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~-pgtT~~~~~~~--~~~~~~l~DTPG~i~~~~ 277 (377)
...+|+++|.|||||||++|+|++++.+.++.. ++||+...... -+..+.++|||||.....
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcccc
Confidence 346899999999999999999999887777765 67776533322 256799999999987643
No 79
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.77 E-value=6.7e-09 Score=90.01 Aligned_cols=59 Identities=39% Similarity=0.558 Sum_probs=47.8
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE--Ee-CCceEEEcCCccccC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~~~l~DTPG~i~~ 275 (377)
+++|+++|.+|+|||||+|+|++......++.+++|++.... .. +..+.++||||+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 468999999999999999999987666778889999886432 22 456889999999643
No 80
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.8e-09 Score=101.55 Aligned_cols=58 Identities=38% Similarity=0.497 Sum_probs=46.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-------------------CCceEEEcCCccccC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------GKDLEFLDSPGIIPM 275 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-------------------~~~~~l~DTPG~i~~ 275 (377)
.++++|||.||||||||+|+|+... +.+++.||||.++.. +.+ .-.+.++|.+|+++.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 3579999999999999999999766 889999999998532 111 113689999999975
No 81
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.76 E-value=4e-09 Score=90.56 Aligned_cols=53 Identities=42% Similarity=0.668 Sum_probs=43.1
Q ss_pred EeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-CCceEEEcCCccccC
Q 017100 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 222 lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i~~ 275 (377)
++|++|||||||+|+|++.. ..++..||+|++.+. +.. +.++.++||||+...
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCcccc
Confidence 58999999999999999865 678889999998643 333 457899999999643
No 82
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.76 E-value=7.4e-09 Score=96.16 Aligned_cols=56 Identities=34% Similarity=0.549 Sum_probs=45.5
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE--Ee-CCceEEEcCCccccC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~~~l~DTPG~i~~ 275 (377)
+|+++|+||||||||+|+|++.. ..+++.||+|.+...- .. +..+.++||||+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 58999999999999999999765 5688899999875432 22 456889999999754
No 83
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.75 E-value=8.6e-09 Score=110.56 Aligned_cols=56 Identities=32% Similarity=0.515 Sum_probs=47.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
++|+++|.||||||||+|+|++.+ ..+++.||+|.+.....+ +..+.++||||+-.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ys 62 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccc
Confidence 579999999999999999999865 589999999998654333 44789999999964
No 84
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.73 E-value=1.6e-08 Score=86.64 Aligned_cols=59 Identities=36% Similarity=0.565 Sum_probs=46.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~ 275 (377)
..+|+++|.||+|||||+|+|++...+.+++.+.+|+....... +..+.++||||+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence 35799999999999999999998876677777888877543222 246889999998644
No 85
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.72 E-value=9e-09 Score=97.87 Aligned_cols=62 Identities=34% Similarity=0.369 Sum_probs=49.5
Q ss_pred CCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe--------------------CCceEEEcCCccc
Q 017100 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGII 273 (377)
Q Consensus 214 ~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------------~~~~~l~DTPG~i 273 (377)
.+..++++|||.|||||||++|+|++.. +.+++.||+|.++..-++ ...+.++|..|++
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSK-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCC-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 3456789999999999999999999765 569999999999743222 1236899999999
Q ss_pred cCC
Q 017100 274 PMR 276 (377)
Q Consensus 274 ~~~ 276 (377)
+..
T Consensus 96 kGA 98 (391)
T KOG1491|consen 96 KGA 98 (391)
T ss_pred cCc
Confidence 753
No 86
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.72 E-value=8.4e-09 Score=99.92 Aligned_cols=55 Identities=31% Similarity=0.402 Sum_probs=44.0
Q ss_pred eeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe----------------------C---CceEEEcCCcc
Q 017100 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF----------------------G---KDLEFLDSPGI 272 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~----------------------~---~~~~l~DTPG~ 272 (377)
|++||+||||||||+|+|++.. +.+++.||+|++... ... + -.+.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999765 689999999988642 111 1 24789999999
Q ss_pred ccC
Q 017100 273 IPM 275 (377)
Q Consensus 273 i~~ 275 (377)
+..
T Consensus 80 v~g 82 (318)
T cd01899 80 VPG 82 (318)
T ss_pred CCC
Confidence 854
No 87
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.72 E-value=1.4e-08 Score=87.30 Aligned_cols=55 Identities=31% Similarity=0.564 Sum_probs=47.3
Q ss_pred eeEeecCCCCcchhhhhhhc-CCceeccCCCCceeEEEEEEeCCceEEEcCCcccc
Q 017100 220 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~-~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~ 274 (377)
|+++|.+|||||||+|+|++ ......+..+|+|.....+.....+.++||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~ 57 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGY 57 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccc
Confidence 79999999999999999993 34456778889999888888877999999999864
No 88
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.71 E-value=7.4e-09 Score=90.51 Aligned_cols=52 Identities=38% Similarity=0.569 Sum_probs=42.0
Q ss_pred EeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe--CCceEEEcCCcccc
Q 017100 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIP 274 (377)
Q Consensus 222 lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~~~l~DTPG~i~ 274 (377)
++|.+|||||||+|+|++... .+++.+++|++... +.. +..+.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 589999999999999998654 77888999988643 222 45789999999853
No 89
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.67 E-value=2.1e-08 Score=91.71 Aligned_cols=62 Identities=27% Similarity=0.388 Sum_probs=41.4
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccC-CCCceeEEEEEEe---CCceEEEcCCccccCCCCc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISD 279 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~-~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~~~~ 279 (377)
++|.++|.|++||||++|+|+|+....++. ...+|...+.... +..+.++|||||......+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 479999999999999999999988766553 3356666554332 6679999999998665543
No 90
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.67 E-value=5.2e-08 Score=97.50 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=52.8
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCc-----eeccCCCCceeEEEEEE--eCCceEEEcCCccccCCC----CcHHHHHHH
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVR--FGKDLEFLDSPGIIPMRI----SDQAAAIKL 286 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~-----~~v~~~pgtT~~~~~~~--~~~~~~l~DTPG~i~~~~----~~~~~~~~l 286 (377)
.-|+.||.||+||+++||++..... ..-++.||||.....+. +...-.++||||++.+.. -..++-..+
T Consensus 310 ~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~q~~~llt~eEl~~v 389 (572)
T KOG1249|consen 310 GPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPNQILSLLTSEELLNV 389 (572)
T ss_pred cchHHhhhhhhccchhhhhhhhhhccchhccccCCCCcccccceeeeccccccceeecCCCccChhhhhhhccHHHhhhc
Confidence 4577788888888888888763222 23467899998876554 455668999999986521 112333344
Q ss_pred HHhccccccCcChh
Q 017100 287 AICDDIGERSYDVA 300 (377)
Q Consensus 287 ~~~~~i~~~~~~~~ 300 (377)
+....+.++++...
T Consensus 390 ~p~~~lrprtf~vk 403 (572)
T KOG1249|consen 390 TPRRVLRPRTFRVK 403 (572)
T ss_pred CcccccccceEEcC
Confidence 44555666665544
No 91
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.65 E-value=2.8e-08 Score=85.69 Aligned_cols=55 Identities=33% Similarity=0.503 Sum_probs=40.2
Q ss_pred eeeEeecCCCCcchhhhhhhcCCc--eeccCCCCceeEEEEE--Ee--CCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWV--RF--GKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~--~~v~~~pgtT~~~~~~--~~--~~~~~l~DTPG~i 273 (377)
.|+++|.+|||||||+|+|++... ......+++|.+.... .+ +..+.++||||.-
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 589999999999999999997432 2223457888776432 22 3468899999973
No 92
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.63 E-value=2.6e-07 Score=80.51 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcC--CeEEEeeCcc
Q 017100 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG--TKVIFSNGQL 186 (377)
Q Consensus 109 ~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g--~~vi~iSa~~ 186 (377)
...+.+...++.+|++++|+|+.++.+.....+.....++|+++++||+|+... ....+.+++.+.+ .+++++|+++
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEECCC
Confidence 344555566899999999999988766655555554456899999999999653 3344455555666 4899999999
Q ss_pred CCCchhhhhHHHHhhhh
Q 017100 187 GMGTMKLSRLAKALASD 203 (377)
Q Consensus 187 g~gi~~L~~~l~~l~~~ 203 (377)
|.|+++|.+.+.++...
T Consensus 132 g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 132 PQSVQQLVDYLASLTKQ 148 (158)
T ss_pred ccCHHHHHHHHHHhchh
Confidence 99999998887766543
No 93
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.62 E-value=1.5e-07 Score=84.20 Aligned_cols=97 Identities=26% Similarity=0.214 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---HHHHHHHH-HHcC-
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD---RNAWATYF-AKQG- 176 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~---~~~~~~~~-~~~g- 176 (377)
||| ..+.+.+...+..+|++++|+|+.++......+....+ .+.|+++++||+|+...+. .+++.+.+ +..+
T Consensus 78 PG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 78 PGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp SSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccc-cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 787 45777888889999999999999987555444433333 3789999999999994322 22333222 2322
Q ss_pred -----CeEEEeeCccCCCchhhhhHHHHhh
Q 017100 177 -----TKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 177 -----~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.+++++|+.+|.|+..|.+.+.++.
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 4699999999999999888776553
No 94
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.60 E-value=2.1e-07 Score=80.18 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-H--HHHhcCCCeEEEEEccCCCCHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M--DQWLGNRKRILVLNREDMISMA 163 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l--~~~l~~k~~ilVlNK~DL~~~~ 163 (377)
+..+.+||.. |+ ++..+.+...+..+|++++|+|++........+ + .+....+|+++++||+|+.+..
T Consensus 50 ~~~~~~~Dtp--------G~-~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~ 120 (164)
T cd04171 50 GKRLGFIDVP--------GH-EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED 120 (164)
T ss_pred CcEEEEEECC--------Ch-HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH
Confidence 3456777753 33 445555666788999999999998643222212 1 1122335899999999998753
Q ss_pred H----HHHHHHHHHH---cCCeEEEeeCccCCCchhhhhHHHH
Q 017100 164 D----RNAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 164 ~----~~~~~~~~~~---~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
. ...+.+.+.. .+..++++|+++|.|++++.+.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 121 WLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 2 2344455544 3568999999999999988776543
No 95
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.57 E-value=8.5e-08 Score=81.03 Aligned_cols=55 Identities=38% Similarity=0.562 Sum_probs=44.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeC---CceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~---~~~~l~DTPG~i 273 (377)
++|+++|.+|+|||||+|+|.+.. ...+..+++|++... +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999999776 777888899988654 3343 346789999954
No 96
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.57 E-value=1e-07 Score=87.95 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=46.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcC-Cceecc-CCCCceeEEEEEE--e----CCceEEEcCCccccCCCC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR-RMCPAA-PRPGVTRVLKWVR--F----GKDLEFLDSPGIIPMRIS 278 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~-~~~~v~-~~pgtT~~~~~~~--~----~~~~~l~DTPG~i~~~~~ 278 (377)
..|+++|.+|+|||||+|.|.+. ....++ ....+|+++.... . +..++++||||+......
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~ 76 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERG 76 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccC
Confidence 46899999999999999999987 245544 4477898865432 2 357999999999865443
No 97
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.57 E-value=5.5e-07 Score=76.24 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=60.0
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH-HHHHHHHHHHcCC-eEEEeeCccCCCc
Q 017100 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD-RNAWATYFAKQGT-KVIFSNGQLGMGT 190 (377)
Q Consensus 113 ~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~-~~~~~~~~~~~g~-~vi~iSa~~g~gi 190 (377)
.+...++++|+++.|+|+.++.+..+..+.... .+|.++|+||+||.+... .+...++++..+. .++.+|+++|.|+
T Consensus 55 ~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 55 ALIVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred HHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 333458999999999999988877665554443 469999999999975322 1222233445554 6889999999999
Q ss_pred hhhhhHH
Q 017100 191 MKLSRLA 197 (377)
Q Consensus 191 ~~L~~~l 197 (377)
+++.+.+
T Consensus 134 ~~l~~~l 140 (142)
T TIGR02528 134 EALVDYL 140 (142)
T ss_pred HHHHHHH
Confidence 8876654
No 98
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.56 E-value=6.3e-08 Score=94.95 Aligned_cols=58 Identities=34% Similarity=0.367 Sum_probs=47.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeC------------------CceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~------------------~~~~l~DTPG~i~~ 275 (377)
++++|||+||||||||+|+|++.+...+++.||||.+... +.+. ..+.++|.||++..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 5799999999999999999998764388999999998643 2321 24789999999864
No 99
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.55 E-value=3.1e-08 Score=90.28 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=40.9
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceecc------------------------------CCCCceeEEEEEEe---CCceE
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA------------------------------PRPGVTRVLKWVRF---GKDLE 265 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~------------------------------~~pgtT~~~~~~~~---~~~~~ 265 (377)
+|+++|.+|+|||||+|+|+....+.++ ...|+|++.....+ +..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999999754333221 12788988654443 55789
Q ss_pred EEcCCccc
Q 017100 266 FLDSPGII 273 (377)
Q Consensus 266 l~DTPG~i 273 (377)
++||||+.
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999974
No 100
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.54 E-value=7.6e-08 Score=83.52 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=41.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe------CCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~------~~~~~l~DTPG~i 273 (377)
.|+++|.+|||||||+|+|++.. ......+++|.+.....+ +..+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 48999999999999999999654 444566788877643322 3468999999973
No 101
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.54 E-value=4.7e-07 Score=83.61 Aligned_cols=96 Identities=15% Similarity=0.009 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHhh--hcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHH----HHHHHc
Q 017100 104 PGHIAKTEKELKDQLK--LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~--~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~~~----~~~~~~ 175 (377)
||| +++.+.+..-+. .+|+++.|+|++.+......++..++. ++|+++|+||+|++++.....-. +.+...
T Consensus 92 pG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~ 170 (224)
T cd04165 92 AGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILKVP 170 (224)
T ss_pred CCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCC
Confidence 787 555555555453 799999999998876655555544443 78999999999998765443322 233211
Q ss_pred --------------------------CCeEEEeeCccCCCchhhhhHHHHh
Q 017100 176 --------------------------GTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 176 --------------------------g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
..+++.+|+.+|.|++.|.++|..|
T Consensus 171 g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 171 GVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred CccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 1368889999999999999888765
No 102
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.54 E-value=1.5e-06 Score=74.10 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=75.8
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA 163 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~ 163 (377)
.+..+.+||....... .+...+...+.....+..+|++++|+|++.+....+..+.+++. +.|+++|+||+|+.+..
T Consensus 43 ~~~~~~i~DtpG~~~~-~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 43 GGREFILIDTGGIEPD-DEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEE 121 (157)
T ss_pred CCeEEEEEECCCCCCc-hhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChH
Confidence 3466788887644221 11111223444556789999999999999877777766666654 68999999999998765
Q ss_pred HHHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHH
Q 017100 164 DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 164 ~~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.. ...+...+. .++++|+++|.|++++.+.+.
T Consensus 122 ~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 122 DE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAIL 154 (157)
T ss_pred HH---HHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence 44 222334454 789999999999988876654
No 103
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.51 E-value=1e-06 Score=75.18 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCC-CHHHHHHHHHHHHHcC-CeEEEeeCc
Q 017100 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQG-TKVIFSNGQ 185 (377)
Q Consensus 108 ~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~-~~~~~~~~~~~~~~~g-~~vi~iSa~ 185 (377)
....+.+......+|+|++|.|+..+.....+.+...+ ++|+|=|+||+|+. +.++.+.-.++++..| .+++.+|+.
T Consensus 51 ~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 51 PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence 45566666677899999999999999988888888776 68999999999999 4555555556777777 467889999
Q ss_pred cCCCchhhhhHHHH
Q 017100 186 LGMGTMKLSRLAKA 199 (377)
Q Consensus 186 ~g~gi~~L~~~l~~ 199 (377)
+|+|+++|++.|++
T Consensus 130 ~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 130 TGEGIEELKDYLEE 143 (143)
T ss_pred CCcCHHHHHHHHhC
Confidence 99999999888753
No 104
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.49 E-value=1.7e-06 Score=76.11 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=67.5
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHH
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMA 163 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~ 163 (377)
.+..+.+||.... .++...+...+..+|++++|+|+..+.+..... +..+. .++|+++|+||+|+....
T Consensus 65 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 65 QEYLLNLIDTPGH---------VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred CcEEEEEEECCCC---------hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 4455667886433 345556667789999999999998765443322 22222 368999999999996432
Q ss_pred HHHHHHHHHHHcCC---eEEEeeCccCCCchhhhhHHHH
Q 017100 164 DRNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 164 ~~~~~~~~~~~~g~---~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
......+.....+. .++.+|+++|.|+++|.+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 136 PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHh
Confidence 11111111222233 4889999999999988776543
No 105
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.46 E-value=7.4e-08 Score=89.63 Aligned_cols=63 Identities=27% Similarity=0.310 Sum_probs=45.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE----EEEEEeCCceEEEcCCccccCCCCc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPMRISD 279 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~----~~~~~~~~~~~l~DTPG~i~~~~~~ 279 (377)
.+++|.++|.||||||||||+|...+...++..+-+|.. .+.+. ++.+.|.||||+-...-.|
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhh
Confidence 467899999999999999999997655555555433322 22222 4789999999997654445
No 106
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.45 E-value=2e-06 Score=84.71 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH----HHHHHhc--CCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~----~l~~~l~--~k~~ilVlNK~DL~ 160 (377)
+..+.+||+... ....|.++....+.+.+.+..+|+|++|+|+.++....+. .+...+. ++|+++|+||+|+.
T Consensus 236 ~~~i~l~DT~G~-~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 236 GGEVLLTDTVGF-IRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred CceEEEEecCcc-cccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 346777887543 1234544444455566679999999999999987654332 1111222 68999999999998
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+...... .......++++|+++|.|+++|.+.+.+
T Consensus 315 ~~~~v~~----~~~~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 315 DEPRIER----LEEGYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred ChHhHHH----HHhCCCCEEEEEccCCCCHHHHHHHHHh
Confidence 7544322 1222346899999999999998776643
No 107
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.45 E-value=1.9e-07 Score=80.46 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=40.0
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeCC---ceEEEcCCcc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGI 272 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~~~l~DTPG~ 272 (377)
+|+++|.+|||||||+|+|++.+ ...+..|++|.+... +..+. .+.++||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 68999999999999999999754 344667777776543 22332 3679999995
No 108
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.44 E-value=1.5e-06 Score=78.90 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC-CC-cHHHHHHh--cCCCeEEEEEccCCCCHH
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-TT-HPLMDQWL--GNRKRILVLNREDMISMA 163 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~-~~-~~~l~~~l--~~k~~ilVlNK~DL~~~~ 163 (377)
..+.+||. ||| ..+.+.+...+..+|++++|+|+..+.. .. ...+..+. ..+|+++|+||+|+.+..
T Consensus 83 ~~i~~iDt--------PG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 83 RHVSFVDC--------PGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cEEEEEEC--------CCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHH
Confidence 44567775 555 4566677777889999999999987521 11 12232222 234789999999998754
Q ss_pred HHH----HHHHHHHH---cCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 164 DRN----AWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 164 ~~~----~~~~~~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
... ...+.+.. .+..++++|+++|.|+++|.+.+.+.
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 332 22222322 24678999999999999988877653
No 109
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.43 E-value=4e-06 Score=79.51 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=65.8
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHH-cC-CeEEEeeCcc
Q 017100 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAK-QG-TKVIFSNGQL 186 (377)
Q Consensus 111 ~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~~~~~~~~-~g-~~vi~iSa~~ 186 (377)
.+.....++.+|++++|+|++.+.... ..+...+ .++|.++|+||+|+.++.....+...+.. .+ ..++++||++
T Consensus 70 ~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 70 MKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence 445567789999999999998765443 3333333 36899999999999876554433333332 23 3789999999
Q ss_pred CCCchhhhhHHHHhhhh
Q 017100 187 GMGTMKLSRLAKALASD 203 (377)
Q Consensus 187 g~gi~~L~~~l~~l~~~ 203 (377)
|.|+++|.+.+.+..+.
T Consensus 149 g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999998888766543
No 110
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.42 E-value=2e-07 Score=84.24 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=39.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccC----CCCceeEEEEEEe--CCceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP----RPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~----~pgtT~~~~~~~~--~~~~~l~DTPG~i~~ 275 (377)
++|+++|.+|||||||+|+|++......+. ...+|+....+.. ..++.++||||+-..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 579999999999999999999743221111 1224554444432 247899999999643
No 111
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.41 E-value=4.9e-06 Score=71.86 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=63.1
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HHHHHHHHHHHHc-----CCeEEEeeCc
Q 017100 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAKQ-----GTKVIFSNGQ 185 (377)
Q Consensus 115 ~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~~~~~~~~~-----g~~vi~iSa~ 185 (377)
...+..+|+++.|+|+..+.+.....+.... .++|+++++||+|+.+. .....+.+.+++. +..++++|++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISAL 158 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEecc
Confidence 3557899999999999988776555544443 37899999999999876 4444555544432 2578999999
Q ss_pred cCCCchhhhhHHHH
Q 017100 186 LGMGTMKLSRLAKA 199 (377)
Q Consensus 186 ~g~gi~~L~~~l~~ 199 (377)
.+.|+.++.+.+.+
T Consensus 159 ~~~~i~~~~~~l~~ 172 (174)
T cd01895 159 TGQGVDKLFDAIDE 172 (174)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999888776554
No 112
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.38 E-value=6.3e-06 Score=73.85 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=70.5
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH--HhcCCCeEEEEEccCCCCH
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ--WLGNRKRILVLNREDMISM 162 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~--~l~~k~~ilVlNK~DL~~~ 162 (377)
..+..+.+||. ||| ..+.+........+|.++.|+|++........+... ...+.|+++++||+|+...
T Consensus 65 ~~~~~~~i~Dt--------pG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 65 EENLQITLVDC--------PGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE 135 (192)
T ss_pred ccCceEEEEEC--------CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 34566778886 443 345555666678899999999998754332221111 1236799999999999865
Q ss_pred HH----HHHHHHHHHH-------cCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 163 AD----RNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 163 ~~----~~~~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.. .+.+.+.+.. .+..++++|+++|.|+.+|.+.+...
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 136 EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 43 2223332221 24679999999999999988776643
No 113
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=3e-06 Score=75.03 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=84.8
Q ss_pred cccccCCcEEEEcCCCCCcC-----CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc---------C
Q 017100 82 DWADLDADLYYWTKSLRPVQ-----WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---------N 147 (377)
Q Consensus 82 ~~~~~~~d~vi~d~~L~~~q-----w~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~---------~ 147 (377)
.-++.|+|++..+-.+.... |..+.++++...+..+++.+++++.|+|..+..+..+ ..+|+. +
T Consensus 51 YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~--t~kWi~dv~~e~gs~~ 128 (221)
T KOG0094|consen 51 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFEN--TSKWIEDVRRERGSDD 128 (221)
T ss_pred ccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHH--HHHHHHHHHhccCCCc
Confidence 34455666666555444332 6666679999999999999999999999988766654 344432 1
Q ss_pred CCeEEEEEccCCCCHHHHH--HHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhhh
Q 017100 148 RKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (377)
Q Consensus 148 k~~ilVlNK~DL~~~~~~~--~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (377)
.-+++|.||.||+++++.. +-...-++.+..++.+|++.|.++++|.+.+......
T Consensus 129 viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 129 VIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred eEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 2356899999999987532 2223345567778889999999999887766655443
No 114
>PRK09866 hypothetical protein; Provisional
Probab=98.35 E-value=4.9e-06 Score=86.14 Aligned_cols=109 Identities=14% Similarity=0.050 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C--CCeEEEEEccCCCC-
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMIS- 161 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~--k~~ilVlNK~DL~~- 161 (377)
...++..|+..-. -|+ ...+.+.+.+.++.+|+||+|+|+....+..+..+.+.+. + .|+++|+||+|+.+
T Consensus 229 ~~QIIFVDTPGIh---k~~-~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr 304 (741)
T PRK09866 229 PGQLTLLDTPGPN---EAG-QPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR 304 (741)
T ss_pred cCCEEEEECCCCC---Ccc-chHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc
Confidence 4566777754321 111 1224555667899999999999998877766666666554 3 49999999999975
Q ss_pred ----HHHHHHHHH-HHHHcC---CeEEEeeCccCCCchhhhhHHHH
Q 017100 162 ----MADRNAWAT-YFAKQG---TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 162 ----~~~~~~~~~-~~~~~g---~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+....+.. ++.+.+ ..++++||+.|.|++.|.+.+..
T Consensus 305 eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 233333332 222222 47999999999999998887765
No 115
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.35 E-value=5.6e-07 Score=94.34 Aligned_cols=51 Identities=43% Similarity=0.642 Sum_probs=42.3
Q ss_pred ecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccC
Q 017100 224 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (377)
Q Consensus 224 G~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~ 275 (377)
|.||||||||+|+|++.+ ..+++.||+|.+.....+ +..+.++||||....
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence 899999999999999865 589999999998754332 456899999999653
No 116
>PRK09866 hypothetical protein; Provisional
Probab=98.35 E-value=5.8e-07 Score=92.86 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=55.6
Q ss_pred hhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe----CCceEEE
Q 017100 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFL 267 (377)
Q Consensus 192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~l~ 267 (377)
.+++.++.+.......++. .+.++++|++|+|||||+|+|.|.....+++.+.+|. +.++.. ...+.+.
T Consensus 50 ~i~~ri~~L~~~L~Kv~~~------~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT~i~~~pg~re~~L~~ 122 (741)
T PRK09866 50 NIAERHAMLNNELRKISRL------EMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PTLIRHTPGQKEPVLHF 122 (741)
T ss_pred HHHHHHHHHHHHHHHHhcc------ceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cEEEEecCCcCceeeec
Confidence 4455555554443322222 2679999999999999999999988888889999988 445443 2346789
Q ss_pred cCCcccc
Q 017100 268 DSPGIIP 274 (377)
Q Consensus 268 DTPG~i~ 274 (377)
||.|||.
T Consensus 123 dtvgfI~ 129 (741)
T PRK09866 123 SHVAPID 129 (741)
T ss_pred CCccchH
Confidence 9999997
No 117
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.34 E-value=9.5e-06 Score=69.32 Aligned_cols=111 Identities=21% Similarity=0.188 Sum_probs=78.4
Q ss_pred cCCcEEEEcCCCCCcCCCchH--HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC-
Q 017100 86 LDADLYYWTKSLRPVQWYPGH--IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI- 160 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh--~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~- 160 (377)
.+.++++||...-. .+.. .....+.....+..+|++++|+|+..+.......+.+.+. +.|.++|+||+|+.
T Consensus 49 ~~~~~~liDtpG~~---~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 49 DDAQIIFVDTPGIH---KPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred CCeEEEEEECCCCC---cchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 45678888864321 1111 1223334456789999999999999885555555555444 48999999999998
Q ss_pred CHHHHHHHHHHHHHcC--CeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~g--~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.......+...+.... .+++.+|++.+.|++++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 126 DKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred cHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHh
Confidence 5566667777776654 57889999999999888777654
No 118
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.34 E-value=3e-07 Score=82.48 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=40.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcC------CceeccCCCCceeEEEEE--Ee---------------CCceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR------RMCPAAPRPGVTRVLKWV--RF---------------GKDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~------~~~~v~~~pgtT~~~~~~--~~---------------~~~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|+|++. .....+..+|+|.+.... .+ +..+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 36999999999999999999863 122334567888886432 11 3367899999973
No 119
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.33 E-value=7.5e-07 Score=76.81 Aligned_cols=56 Identities=27% Similarity=0.321 Sum_probs=39.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|+|++.... ...+.++.+.....+..+. .+.++||||.-
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 36899999999999999999975432 2344555555544444432 46889999963
No 120
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.33 E-value=2e-06 Score=74.72 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=69.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---hcCCCeEEEEEccCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---LGNRKRILVLNREDMI 160 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~---l~~k~~ilVlNK~DL~ 160 (377)
....+.+||...+ ++........++.+|++++|+|..++.+..+.. +..+ ..+.|+++|+||+|+.
T Consensus 47 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 47 KTILVDFWDTAGQ---------ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEEEEeCCCc---------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 4456667776443 344455557799999999999988765433211 1111 1268999999999996
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.. .....++....+.+++.+|+++|.|++++.+.+.+
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 118 PSV-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred hhH-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 432 23333344445678899999999999888665543
No 121
>COG1159 Era GTPase [General function prediction only]
Probab=98.33 E-value=4e-06 Score=79.11 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH-HHHHHHHHHHcC--CeEEEee
Q 017100 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD-RNAWATYFAKQG--TKVIFSN 183 (377)
Q Consensus 109 ~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~-~~~~~~~~~~~g--~~vi~iS 183 (377)
...+..++.+..+|+|++|+|+..+.+..+..+...+. +.|+++++||+|..+++. +....+++.... ..++++|
T Consensus 74 ~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 74 LMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred HHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence 34455557789999999999999988887776666554 469999999999998776 455556665443 5789999
Q ss_pred CccCCCchhhhhHHHHhhhhh
Q 017100 184 GQLGMGTMKLSRLAKALASDV 204 (377)
Q Consensus 184 a~~g~gi~~L~~~l~~l~~~~ 204 (377)
|++|.+++.|.+.+.+..+..
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCC
Confidence 999999999988887766543
No 122
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.32 E-value=3.5e-07 Score=80.72 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=39.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceec---------------cCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v---------------~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
+|+++|.+|+|||||+|+|++...... ....|+|.+.....+ +..+.++||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH
Confidence 489999999999999999986543221 123466666544333 3468899999975
No 123
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.32 E-value=5.3e-07 Score=76.55 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=37.9
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceec-cCCCCceeEEEEEEeC---CceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~---~~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|+|.+...... ....+.+.....+... ..+.++||||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 3689999999999999999997553322 2233333433334432 347799999974
No 124
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.32 E-value=2.8e-06 Score=73.85 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCC-CCCCcH-H----HHHHh---cCCCeEEEEEccC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-LSTTHP-L----MDQWL---GNRKRILVLNRED 158 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p-~~~~~~-~----l~~~l---~~k~~ilVlNK~D 158 (377)
..+.+||.......... .+.....+.+.++.+|++++|+|+.++ .+..+. . +.... ..+|+++|+||+|
T Consensus 48 ~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 125 (170)
T cd01898 48 RSFVVADIPGLIEGASE--GKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID 125 (170)
T ss_pred CeEEEEecCcccCcccc--cCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence 36778886653211000 012233444567789999999999876 222211 1 22211 2588999999999
Q ss_pred CCCHHHHHHHHHHHHHc--CCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMADRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.+......|...+... +..++.+|++.+.|++++.+.+.+
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 126 LLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred cCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHh
Confidence 98876666665544333 567899999999999888766543
No 125
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.32 E-value=8e-06 Score=71.92 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD 164 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~ 164 (377)
+.++.+||.. |+ ..........+..+|.++.|+|+..+......++...+ .++|+++|+||+|+..+..
T Consensus 61 ~~~~~liDtp--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~ 131 (189)
T cd00881 61 DRRVNFIDTP--------GH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEED 131 (189)
T ss_pred CEEEEEEeCC--------Cc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhc
Confidence 4567777753 32 33445566778899999999999876654443333333 3789999999999987433
Q ss_pred HHH----HHHHHHH--------------cCCeEEEeeCccCCCchhhhhHHHH
Q 017100 165 RNA----WATYFAK--------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 165 ~~~----~~~~~~~--------------~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
... ..+.++. ....++++|+++|.|+.++.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 132 LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 222 2222222 2467889999999999888776554
No 126
>PLN03118 Rab family protein; Provisional
Probab=98.32 E-value=7.9e-07 Score=80.96 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=40.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|++.......+..|.+.....+.++. .+.|+||||..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCch
Confidence 5789999999999999999999765333444444444444444443 46899999974
No 127
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.31 E-value=4.2e-06 Score=85.07 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCC-CCC---CcHHHHHHhcCCCeEEEEEccCCCCHHHHHH----HHHHHHH-
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIP-LST---THPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFAK- 174 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p-~~~---~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~----~~~~~~~- 174 (377)
||| +.+.+.+..-+..+|.+++|+|+..+ ... ....+...+.-++.++|+||+|+++.+...+ ..+++..
T Consensus 125 PGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~ 203 (460)
T PTZ00327 125 PGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGT 203 (460)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhh
Confidence 887 56777888788999999999999874 222 1122233344567889999999997554332 2233322
Q ss_pred --cCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 175 --QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 175 --~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+.+++++|+++|.|++.|.+.|.+.
T Consensus 204 ~~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 204 IADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred ccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 24789999999999999998888753
No 128
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.31 E-value=5e-07 Score=76.25 Aligned_cols=55 Identities=33% Similarity=0.448 Sum_probs=44.3
Q ss_pred EeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe----CCceEEEcCCccccCC
Q 017100 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 222 lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~l~DTPG~i~~~ 276 (377)
++|.+|+|||||+|+|++......+..+++|........ ...+.++||||+....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc
Confidence 589999999999999998766667788888887654443 4579999999997553
No 129
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.31 E-value=9.2e-07 Score=76.33 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=39.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCcee-ccCCCCceeEEEEEEeCC---ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~l~DTPG~ 272 (377)
++|+++|.+|||||||+|+|.+..... ..+..|.+.....+.++. .+.++||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 579999999999999999999765332 344455444444444432 4678999995
No 130
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.31 E-value=5e-07 Score=89.01 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=48.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC----Cce-----------eccCCCC---ceeEEEEE-------EeC----CceEE
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKWV-------RFG----KDLEF 266 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~----~~~-----------~v~~~pg---tT~~~~~~-------~~~----~~~~l 266 (377)
..+.|++||..|+|||||||++++. +.. .+++.+| ||.++.++ ... ..+.|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4578999999999999999999986 444 5788899 88887652 223 57899
Q ss_pred EcCCccccC
Q 017100 267 LDSPGIIPM 275 (377)
Q Consensus 267 ~DTPG~i~~ 275 (377)
+|||||...
T Consensus 96 IDcvG~~v~ 104 (492)
T TIGR02836 96 VDCVGYTVK 104 (492)
T ss_pred EECCCcccC
Confidence 999999753
No 131
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.30 E-value=6.4e-06 Score=84.13 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=73.0
Q ss_pred cCCcEEEEcCCCCCcCCCch-H-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc---------HHHHHH----------
Q 017100 86 LDADLYYWTKSLRPVQWYPG-H-IAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---------PLMDQW---------- 144 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PG-h-~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~---------~~l~~~---------- 144 (377)
.+..+++||...-- +| + .+.+-..+.+.++++|+|++|+|+......++ .++..+
T Consensus 204 ~~~~f~laDtPGli----egas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~ 279 (500)
T PRK12296 204 GDTRFTVADVPGLI----PGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGL 279 (500)
T ss_pred CCeEEEEEECCCCc----cccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchh
Confidence 34567788865320 00 1 11223345567899999999999965322111 123332
Q ss_pred --hcCCCeEEEEEccCCCCHHHHHHH-HHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 145 --LGNRKRILVLNREDMISMADRNAW-ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 145 --l~~k~~ilVlNK~DL~~~~~~~~~-~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
+.++|+++|+||+|+.+..+...+ ...+.+.+..++++|++++.|+++|...+.++..
T Consensus 280 ~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 280 GDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred hhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 236899999999999765443333 3345556788999999999999998887766544
No 132
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.30 E-value=1.1e-06 Score=76.88 Aligned_cols=55 Identities=25% Similarity=0.379 Sum_probs=37.8
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceecc-CCCCceeEEEEEEeCC---ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~-~~pgtT~~~~~~~~~~---~~~l~DTPG~ 272 (377)
.+|++||.||||||||+|++.+....... ...|.+.....+..+. .+.+.||||-
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 68999999999999999999975432221 2234444334444432 5789999995
No 133
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.30 E-value=4e-07 Score=79.36 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=32.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCccccC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~~ 275 (377)
+|+++|.||||||||+|+|.+.... ...|....+ ... -++||||+...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~~~v~~---~~~-~~iDtpG~~~~ 50 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKTQAVEF---NDK-GDIDTPGEYFS 50 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----CccceEEEE---CCC-CcccCCccccC
Confidence 5999999999999999999975421 123333322 111 26999998543
No 134
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.29 E-value=1.1e-06 Score=76.08 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=38.5
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.+|+++|.||||||||+|+|.+.+ ......|.++.+. ..+..+. .+.++||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 579999999999999999999654 3333445544443 2333333 46799999974
No 135
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.29 E-value=8.9e-07 Score=77.77 Aligned_cols=55 Identities=27% Similarity=0.465 Sum_probs=37.8
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+.......+..|... ..+.. +..+.++||||.-
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEECCEEEEEEECCCCH
Confidence 4689999999999999999999764333333334222 22222 3357899999973
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.28 E-value=1.1e-05 Score=72.71 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=69.3
Q ss_pred cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HHHHHh-----cCCCeEEEEEccCCCCH
Q 017100 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISM 162 (377)
Q Consensus 89 d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~ 162 (377)
.+.+||....- ..++.++..........+..+|++++|+|++++....+. .+..++ .++|+++|+||+|+.+.
T Consensus 90 ~~~i~Dt~G~~-~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 90 EVLLTDTVGFI-RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred eEEEeCCCccc-cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 67778765431 123333323333334457789999999999987655432 122222 25799999999999876
Q ss_pred HHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 163 ~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.... ..+...+..++++|++++.|+.++.+.+.
T Consensus 169 ~~~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 169 EELE---ERLEAGRPDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred HHHH---HHhhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence 5443 23344456789999999999988876654
No 137
>PTZ00099 rab6; Provisional
Probab=98.28 E-value=3.6e-06 Score=74.72 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=69.7
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccC
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNRED 158 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l----~~k~~ilVlNK~D 158 (377)
.....+.+||...+ ++........++.+|++|+|+|..++.+..+. .+..+. ...|+++|.||+|
T Consensus 26 ~~~v~l~iwDt~G~---------e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~D 96 (176)
T PTZ00099 26 EGPVRLQLWDTAGQ---------ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 96 (176)
T ss_pred CEEEEEEEEECCCh---------HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 34466777775433 55556666789999999999998776543322 122222 1457799999999
Q ss_pred CCCHH--HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 159 MISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 159 L~~~~--~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
|.... .......+....+..++.+||++|.|+.++.+.+.+.
T Consensus 97 L~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~ 140 (176)
T PTZ00099 97 LGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAK 140 (176)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 96421 1122223334456677889999999999887665543
No 138
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.28 E-value=2.5e-06 Score=83.21 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCcCCCchHH-HHHHHHHHHHhhhcCeEEEEEecCCCCCCC---c-----HHHHHH---hcCCCeEEEEE
Q 017100 88 ADLYYWTKSLRPVQWYPGHI-AKTEKELKDQLKLMDVVIEVRDARIPLSTT---H-----PLMDQW---LGNRKRILVLN 155 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~-~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~---~-----~~l~~~---l~~k~~ilVlN 155 (377)
..+.+||....--. .|. +.....+.+.++++|++++|+|+....... + .++..+ +.++|.++|+|
T Consensus 205 ~~~~i~D~PGli~~---a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 205 RSFVIADIPGLIEG---ASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred eEEEEEeCCCcccC---CcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 45677776432100 001 123445556789999999999998642111 1 112222 13689999999
Q ss_pred ccCCCCHHHHHHHHHHHH-HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 156 REDMISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 156 K~DL~~~~~~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
|+|+.+......+.+.+. +.+..++++|++++.|+++|.+.+.+
T Consensus 282 K~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 282 KIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred CccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHH
Confidence 999987766555555554 34678999999999999988776654
No 139
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.27 E-value=2.8e-06 Score=84.61 Aligned_cols=115 Identities=20% Similarity=0.192 Sum_probs=80.8
Q ss_pred cccccCCcEEEEcCCC-CCcCCCchHH-HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-HhcCCCeEEEEEccC
Q 017100 82 DWADLDADLYYWTKSL-RPVQWYPGHI-AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WLGNRKRILVLNRED 158 (377)
Q Consensus 82 ~~~~~~~d~vi~d~~L-~~~qw~PGh~-~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~-~l~~k~~ilVlNK~D 158 (377)
.+.-.|+-+.++|++. +-.. ... +-..+..++.++++|+||+|+|++.+....+..+.. ...++|+++|+||+|
T Consensus 259 ~i~i~G~pv~l~DTAGiRet~---d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~D 335 (454)
T COG0486 259 DINLNGIPVRLVDTAGIRETD---DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKAD 335 (454)
T ss_pred EEEECCEEEEEEecCCcccCc---cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechh
Confidence 3333456677777763 3221 111 234566677899999999999999987777766666 345799999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 159 MISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 159 L~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
|.++...... + ...+..++.+|+++|.|++.|++.+.++..
T Consensus 336 L~~~~~~~~~-~--~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 336 LVSKIELESE-K--LANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred cccccccchh-h--ccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 9987553322 1 123456899999999999999888776643
No 140
>PRK00089 era GTPase Era; Reviewed
Probab=98.26 E-value=1.9e-05 Score=75.60 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=78.0
Q ss_pred cCCcEEEEcCCCCCcCCCchH-H-HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC-
Q 017100 86 LDADLYYWTKSLRPVQWYPGH-I-AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI- 160 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh-~-~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~- 160 (377)
.+..++.+|+..-.. +.+ . +...+.....+..+|+|++|+|+..+.......+...+. +.|.++|+||+|+.
T Consensus 51 ~~~qi~~iDTPG~~~---~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 51 DDAQIIFVDTPGIHK---PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred CCceEEEEECCCCCC---chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC
Confidence 346788888654311 111 1 122334456789999999999998865555555555543 57999999999999
Q ss_pred CHHHHHHHHHHHHHc--CCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 161 SMADRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
+........+.+.+. ...++.+|++++.|+.+|.+.+.+...
T Consensus 128 ~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 128 DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 555555555555442 257889999999999999888776543
No 141
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.26 E-value=1.2e-06 Score=83.41 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=38.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccC--------CCCce-eEEEEEEe--C---CceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP--------RPGVT-RVLKWVRF--G---KDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~--------~pgtT-~~~~~~~~--~---~~~~l~DTPG~i~ 274 (377)
.++|++||.+|+|||||+|+|.+........ ...|+ .......+ . -.+.++|||||-.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 4689999999999999999999766443322 22222 22222222 2 1488999999964
No 142
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.25 E-value=1.1e-06 Score=76.73 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=39.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i 273 (377)
..+|+++|.+|||||||+|+|.+.......+..|.+...... .+..+.++||||..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 578999999999999999999976433333444543322111 14567899999963
No 143
>PRK15494 era GTPase Era; Provisional
Probab=98.25 E-value=1.2e-05 Score=78.99 Aligned_cols=116 Identities=14% Similarity=0.036 Sum_probs=74.6
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA 163 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~ 163 (377)
.+..+++||+...... +..-.....+.....+..+|++++|+|+..........+...+. +.|.++|+||+|+.+.
T Consensus 98 ~~~qi~~~DTpG~~~~-~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~- 175 (339)
T PRK15494 98 KDTQVILYDTPGIFEP-KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK- 175 (339)
T ss_pred CCeEEEEEECCCcCCC-cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-
Confidence 3456788887654211 00001123344445689999999999988765554433433332 5688999999999754
Q ss_pred HHHHHHHHHHHcC--CeEEEeeCccCCCchhhhhHHHHhhhh
Q 017100 164 DRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKALASD 203 (377)
Q Consensus 164 ~~~~~~~~~~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (377)
......+++...+ ..++++||++|.|++.|.+.+.+....
T Consensus 176 ~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 176 YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 2333444454443 568999999999999998887765543
No 144
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.24 E-value=8.1e-07 Score=77.11 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=36.2
Q ss_pred eeeEeecCCCCcchhhhhhhcCCce---eccCCCCceeEEE--EEEe-CCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~---~v~~~pgtT~~~~--~~~~-~~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|+|.+.... .......+|.... .+.. +..+.++||||..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh
Confidence 4799999999999999999864211 1122234444432 2333 3468899999974
No 145
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.23 E-value=4.4e-06 Score=72.20 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-------~~k~~ilVlNK~DL 159 (377)
..++.+||... ++.........++++|++++|+|..++.+.. .+..++ .+.|.++|.||+|+
T Consensus 51 ~~~l~i~Dt~G---------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 51 TVELFIFDSAG---------QELYSDMVSNYWESPSVFILVYDVSNKASFE--NCSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEEEECCC---------HHHHHHHHHHHhCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 35667777533 2455555567789999999999987754432 122222 25799999999999
Q ss_pred CCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+..+. .....+....+..++.+|+++|.|+.++.+.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 120 ADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 755321 1122233344677889999999999888766543
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.23 E-value=7.8e-06 Score=69.92 Aligned_cols=80 Identities=19% Similarity=0.127 Sum_probs=56.5
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHH-HHh-cCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCccCCCchhhhh
Q 017100 119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (377)
Q Consensus 119 ~~aDlIL~V~Dar~p~~~~~~~l~-~~l-~~k~~ilVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (377)
+.+|++++|+|+..+... ..+. .+. .++|+++|+||+|+.+......+.+.+ ...+..++++|+.+|.|+..+.+
T Consensus 73 ~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 73 EKPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CCCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 599999999999875332 2222 222 378999999999998654333333333 34467899999999999998877
Q ss_pred HHHHh
Q 017100 196 LAKAL 200 (377)
Q Consensus 196 ~l~~l 200 (377)
.+..+
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 66554
No 147
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.22 E-value=4.5e-06 Score=73.25 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... +.........++.+|.+++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+
T Consensus 57 ~~~l~l~D~~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (173)
T cd04154 57 GYKLNIWDVGGQ---------KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL 127 (173)
T ss_pred CEEEEEEECCCC---------HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccc
Confidence 456778885432 3334445567899999999999987643222 1233332 36799999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.......+..+.+. ..+..++.+||++|.|++++.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 128 PGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred ccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 75432223323331 234578999999999998876554
No 148
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.21 E-value=4.9e-06 Score=81.39 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=70.5
Q ss_pred CcEEEEcCCCC--CcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHH---hcCCCeEEEEEcc
Q 017100 88 ADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQW---LGNRKRILVLNRE 157 (377)
Q Consensus 88 ~d~vi~d~~L~--~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~---l~~k~~ilVlNK~ 157 (377)
..+++||...- ...+ ...+...+.+.++++|++++|+|+.++.+..+. ++..+ +.++|+++|+||+
T Consensus 206 ~~~~i~D~PGli~ga~~----~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKi 281 (335)
T PRK12299 206 KSFVIADIPGLIEGASE----GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKI 281 (335)
T ss_pred cEEEEEeCCCccCCCCc----cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECc
Confidence 45778886422 1111 112344566788999999999999865422221 12221 1268999999999
Q ss_pred CCCCHHHHH--HHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 158 DMISMADRN--AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 158 DL~~~~~~~--~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
|+.+..... ....++...+..++++||+++.|+++|.+.+.++.
T Consensus 282 DL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 282 DLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred ccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 998654322 22223344557899999999999999887776554
No 149
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.21 E-value=5.1e-06 Score=73.03 Aligned_cols=105 Identities=16% Similarity=0.067 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHhc-----CCCeEEEEEccCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWLG-----NRKRILVLNREDMI 160 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~l~-----~k~~ilVlNK~DL~ 160 (377)
..+.+||...+ .+........+..+|++++|+|+.++.+.... . +..+.. ..|+++|.||+|+.
T Consensus 49 ~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 49 FSLQLWDTAGQ---------ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEEEeCCCh---------HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 45666665432 44555555779999999999999765333221 1 222221 23578999999997
Q ss_pred CHHHH----HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 161 SMADR----NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 161 ~~~~~----~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+.... +....+..+.+..++.+|+++|.|+.++.+.+.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 120 SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 54321 111122344567788999999999999877766554
No 150
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.21 E-value=1.4e-06 Score=75.11 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=36.6
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeC--CceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~--~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|++.+.......+..|.+. ..+..+ ..+.+.||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence 47999999999999999999765433333333332 223333 357899999974
No 151
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.21 E-value=9.3e-06 Score=72.84 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCHH-
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMA- 163 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~~- 163 (377)
+..+.+||.. || .++.......+..+|.++.|+|+.+........+... . .+.|.++|+||+|+....
T Consensus 64 ~~~~~l~Dtp--------G~-~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~ 134 (194)
T cd01891 64 DTKINIVDTP--------GH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARP 134 (194)
T ss_pred CEEEEEEECC--------Cc-HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH
Confidence 4456667753 33 4566677788999999999999987432222222222 1 368999999999996432
Q ss_pred --HHHHHHHHHHH-------cCCeEEEeeCccCCCchhhhh
Q 017100 164 --DRNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSR 195 (377)
Q Consensus 164 --~~~~~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~ 195 (377)
...++.+++.. .+..++++|+++|.|+.++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 23444455432 256789999999999866543
No 152
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.20 E-value=2.1e-05 Score=66.24 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH-hcCCCeEEEEEccCCCCHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW-LGNRKRILVLNREDMISMAD 164 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~-l~~k~~ilVlNK~DL~~~~~ 164 (377)
+.++.+||....... ..............+..+|++++|+|+..+....... +... ..+.|.++|+||+|+.....
T Consensus 44 ~~~~~~~Dt~g~~~~--~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 44 LGPVVLIDTPGIDEA--GGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred CCcEEEEECCCCCcc--ccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhh
Confidence 667889987643221 1111222345567789999999999999877666554 2222 24789999999999998776
Q ss_pred HHHHHH-----HHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 165 RNAWAT-----YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 165 ~~~~~~-----~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
...+.. .....+..++++|++++.|+.++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~ 161 (163)
T cd00880 122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIE 161 (163)
T ss_pred HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHh
Confidence 666532 11223467899999999999888776544
No 153
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.20 E-value=1.1e-06 Score=88.79 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=43.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceec------------------------------cCCCCceeEEEEEEe---CC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~ 262 (377)
..++|+++|.+|+|||||+|+|+....... +-.+|+|++.....+ +.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 357899999999999999999984322211 116899999876555 44
Q ss_pred ceEEEcCCccc
Q 017100 263 DLEFLDSPGII 273 (377)
Q Consensus 263 ~~~l~DTPG~i 273 (377)
.+.++||||..
T Consensus 85 ~i~liDtpG~~ 95 (425)
T PRK12317 85 YFTIVDCPGHR 95 (425)
T ss_pred EEEEEECCCcc
Confidence 68999999963
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.20 E-value=7e-06 Score=69.84 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADR 165 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh-~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~ 165 (377)
+..+.+||....... ... ...........+.++|+++.|+|+..+.+..+..+.....++|+++|+||+|+.+....
T Consensus 48 ~~~~~i~DtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~ 125 (157)
T cd04164 48 GIPVRLIDTAGIRET--EDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL 125 (157)
T ss_pred CEEEEEEECCCcCCC--cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc
Confidence 346778887542111 111 11122344466889999999999998777766655555568999999999999876543
Q ss_pred HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 166 ~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.....+..++.+|++++.|+..|.+.+.+.
T Consensus 126 -----~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 126 -----LSLLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred -----ccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 223345789999999999999887776543
No 155
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.20 E-value=2e-06 Score=78.98 Aligned_cols=58 Identities=31% Similarity=0.517 Sum_probs=46.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EE-EeCCceEEEcCCccccC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WV-RFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~-~~~~~~~l~DTPG~i~~ 275 (377)
.-+|+++|+|.||||||+..+++.+ ...+..-|||+... .+ .-+.++.++|-|||+..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieG 122 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEG 122 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccc
Confidence 4689999999999999999999654 56777789998843 22 23678999999999864
No 156
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.19 E-value=5.7e-06 Score=71.24 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-------hcCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-------l~~k~~ilVlNK~DL 159 (377)
..++.+||.. |+ ++........++.+|.++.|+|+.++.+..+ +..+ ..+.|+++|.||+|+
T Consensus 50 ~~~~~i~D~~--------G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~--l~~~~~~~~~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 50 DVRLMLWDTA--------GQ-EEFDAITKAYYRGAQACILVFSTTDRESFEA--IESWKEKVEAECGDIPMVLVQTKIDL 118 (162)
T ss_pred EEEEEEeeCC--------ch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCEEEEEEChhc
Confidence 4567777753 32 4455555677899999999999887654322 2222 237899999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
..... .+....+.+..+.+++.+|++.|.|++++.+.+.
T Consensus 119 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 119 LDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 75432 1222334455678899999999999988766553
No 157
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.19 E-value=1.9e-06 Score=75.98 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=38.5
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
..+|+++|.+|||||||+|+|+........+..|.+. ..+.. +..+.++||||.-
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV--EEIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEECCeEEEEEECCCCH
Confidence 3579999999999999999998654433344444332 22233 3468899999974
No 158
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.19 E-value=2.4e-06 Score=74.50 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=37.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCC--CceeEEEEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|++.+.+ ......| |++.....+..+. .+.+.||||-.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 3689999999999999999998653 2222233 3333333344433 46789999953
No 159
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.19 E-value=1.4e-06 Score=81.16 Aligned_cols=57 Identities=30% Similarity=0.465 Sum_probs=49.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCcee--ccCCCCceeEEEEEEeCCceEEEcCCcc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~~~~~l~DTPG~ 272 (377)
+.+++++.|.+|||||||||.+...+... ...++|-|+.++.++++..++++|.||.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGY 193 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCc
Confidence 34689999999999999999998765432 3448999999999999999999999994
No 160
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.19 E-value=1.6e-06 Score=74.58 Aligned_cols=54 Identities=22% Similarity=0.213 Sum_probs=36.4
Q ss_pred eeeEeecCCCCcchhhhhhhcCCc--eeccCCCCceeEEEEEEeCCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~--~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|+|++... ....+..|.+.... ..-+..+.++||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~-~~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF-EKGNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE-EECCEEEEEEECCCCH
Confidence 478999999999999999997531 22344455443221 1113357899999975
No 161
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.19 E-value=7.2e-06 Score=74.51 Aligned_cols=104 Identities=11% Similarity=0.071 Sum_probs=68.7
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEccC
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNRED 158 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l-~~k~~ilVlNK~D 158 (377)
+...++.+||...+ .++......+++.+|.+++|+|..++.+..+.. +.+.. .+.|+++|.||+|
T Consensus 46 ~~~v~l~iwDtaGq---------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~D 116 (202)
T cd04120 46 GKKIRLQIWDTAGQ---------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 116 (202)
T ss_pred CEEEEEEEEeCCCc---------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 34467778886544 455555567899999999999998876554321 11111 2578999999999
Q ss_pred CCCHHHH--HHHHHHHHHc-CCeEEEeeCccCCCchhhhhHH
Q 017100 159 MISMADR--NAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 159 L~~~~~~--~~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~l 197 (377)
|....+. ..-.++..+. +..++.+||++|.|+.++.+.+
T Consensus 117 L~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 117 CETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred cccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 9653321 1111222332 5678899999999998875544
No 162
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.18 E-value=1.1e-05 Score=84.52 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=68.5
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH----HHHHHHHHc-
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN----AWATYFAKQ- 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~----~~~~~~~~~- 175 (377)
||| +++.+.+...+..+|++++|+|+..+......+...++ .+.| .++|+||+|+++.+... ...+++...
T Consensus 58 PGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~ 136 (581)
T TIGR00475 58 PGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI 136 (581)
T ss_pred CCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 676 66777777788999999999999875432222211122 2566 99999999999765322 222333332
Q ss_pred ---CCeEEEeeCccCCCchhhhhHHHHhhhh
Q 017100 176 ---GTKVIFSNGQLGMGTMKLSRLAKALASD 203 (377)
Q Consensus 176 ---g~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (377)
+.+++++|+++|.|++++.+.+.++...
T Consensus 137 ~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 137 FLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 4678999999999999988877665543
No 163
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.18 E-value=6.6e-06 Score=74.64 Aligned_cols=104 Identities=11% Similarity=-0.034 Sum_probs=68.9
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMI 160 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~ 160 (377)
....+.+||...+ .+........+..+|++++|+|..++.+..+.. +.+...+.|+++|.||+||.
T Consensus 42 ~~~~l~iwDt~G~---------e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 42 GPIRFNVWDTAGQ---------EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEEEEECCCc---------hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 3466778886554 344444456789999999999998765443221 22222367999999999985
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
......+-..+....+..++.+||+.|.|+.++.+.+.
T Consensus 113 ~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 113 DRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred cccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 43211111233345567899999999999988765543
No 164
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.18 E-value=1.7e-06 Score=74.43 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=38.0
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i~ 274 (377)
+|+++|.+|||||||+|++++..........|.+.+. +.. +..+.++||||...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYKNVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEECCEEEEEEECCCChh
Confidence 4899999999999999999977533333334444332 222 34688999999753
No 165
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.18 E-value=2.5e-06 Score=73.42 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... .+........+..+|++++|+|++++.+... ..+...+ .+.|+++|+||+|+
T Consensus 43 ~~~l~i~D~~G~---------~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (160)
T cd04156 43 HLSLTVWDVGGQ---------EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113 (160)
T ss_pred ceEEEEEECCCC---------HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccc
Confidence 356778886432 3444445567899999999999987653221 2233332 36799999999999
Q ss_pred CCHHHHHHHHHHHH------HcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMADRNAWATYFA------KQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~~~~~~~~~~------~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
............+. ..+..++.+||++|.|++++.+.+.
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 114 PGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred ccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 64221122222211 1224578899999999988866553
No 166
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.18 E-value=1.4e-06 Score=78.31 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=38.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceecc---------------CCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~---------------~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|+|+........ ...|+|.+.....+ +..+.++||||..
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~ 76 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA 76 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH
Confidence 6999999999999999999853211111 12566665443333 3467899999985
No 167
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.17 E-value=9.7e-06 Score=72.09 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=65.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (377)
.+..+.+||.... ++........++.+|++++|+|+.++.+..+ ..+.++. .++|+++|+||+|
T Consensus 50 ~~~~l~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D 120 (183)
T cd04152 50 KGITFHFWDVGGQ---------EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQD 120 (183)
T ss_pred CceEEEEEECCCc---------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcC
Confidence 4466778886432 4444444566899999999999887533221 1122222 2689999999999
Q ss_pred CCCH---HHHHHHHHHHHHc----CCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISM---ADRNAWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~---~~~~~~~~~~~~~----g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+... ++...+... ... +..++++||++|.|++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~ 167 (183)
T cd04152 121 LPNALSVSEVEKLLAL-HELSASTPWHVQPACAIIGEGLQEGLEKLYE 167 (183)
T ss_pred ccccCCHHHHHHHhCc-cccCCCCceEEEEeecccCCCHHHHHHHHHH
Confidence 8642 222222211 111 235778999999999988665543
No 168
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.17 E-value=7.1e-06 Score=71.98 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=65.9
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (377)
.+..+.+||.... .+........+..+|++++|+|+.++.+..+ ..+.+.+ .+.|+++|.||+|
T Consensus 51 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 121 (168)
T cd04149 51 KNVKFNVWDVGGQ---------DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQD 121 (168)
T ss_pred CCEEEEEEECCCC---------HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcC
Confidence 3566788886543 4444445577899999999999987643322 1222332 2479999999999
Q ss_pred CCC---HHHHHHHHHH--HHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 159 MIS---MADRNAWATY--FAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 159 L~~---~~~~~~~~~~--~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
+.. .++...+.+. +......++.+||++|.|+.++.+.|
T Consensus 122 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 122 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 863 3333333221 11112357789999999998776544
No 169
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.17 E-value=2.5e-06 Score=73.47 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=36.4
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~ 272 (377)
++|+++|.||||||||+|+|.+.+. .....+..+.+. ..+..+. .+.++||||-
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 3799999999999999999996542 333333333332 2333433 4679999995
No 170
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.17 E-value=1.7e-06 Score=78.20 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=41.4
Q ss_pred eeeeEeecCCCCcchhhhhhhcC------Cce---------eccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~------~~~---------~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
++|+++|.+|+|||||+++|+.. ... ..+-..|+|.+...... +..+.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 67999999999999999999853 110 11125688888755544 4568999999985
No 171
>COG2262 HflX GTPases [General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=79.07 Aligned_cols=103 Identities=21% Similarity=0.221 Sum_probs=72.3
Q ss_pred CCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-----cCCCeEEEEEccCCCCHHHHHHHHH
Q 017100 97 LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-----GNRKRILVLNREDMISMADRNAWAT 170 (377)
Q Consensus 97 L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~l-----~~k~~ilVlNK~DL~~~~~~~~~~~ 170 (377)
..-++=.|-+.-.+.+.+.+-+..+|++|.|+|+.+|....+.+ ....+ ..+|.|+|+||+|+++.......
T Consensus 248 VGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~-- 325 (411)
T COG2262 248 VGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAE-- 325 (411)
T ss_pred ccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhh--
Confidence 33344456667777888888899999999999999984433322 12222 26899999999999876652221
Q ss_pred HHHHcCCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
+.......+++||++|.|++.|++.|.+...
T Consensus 326 -~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 326 -LERGSPNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred -hhhcCCCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 2222226899999999999999888776544
No 172
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.17 E-value=7.5e-06 Score=70.61 Aligned_cols=102 Identities=11% Similarity=0.062 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... .+........+..+|++++|+|+.++.+.. ...+..++ .++|+++|+||+|+
T Consensus 42 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl 112 (158)
T cd04151 42 NLKFQVWDLGGQ---------TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDM 112 (158)
T ss_pred CEEEEEEECCCC---------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCC
Confidence 455677776543 333344456789999999999988653221 12232222 26899999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.......+....+. ..+.+++++|+++|.|++++.+.+
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 113 PGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 75322222222221 122468999999999998886654
No 173
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.17 E-value=7.3e-06 Score=73.95 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=67.6
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEEEccCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMI 160 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-------~~k~~ilVlNK~DL~ 160 (377)
..+.+||...+ .+........++.+|.+++|+|+.++.+..+ +..++ ...|+++|.||+|+.
T Consensus 55 ~~l~l~D~~G~---------~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 55 VKLQIWDTAGQ---------ERFRTITSTYYRGTHGVIVVYDVTNGESFVN--VKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEEEeCCCc---------hhHHHHHHHHhCCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 34566664332 3344445577899999999999987654322 22222 257899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+... .....++....+..++.+|+++|.|+.++.+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 124 ERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 5432 12333344456788999999999999988766544
No 174
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.17 E-value=2e-06 Score=74.26 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=36.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeC---CceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~~~l~DTPG~ 272 (377)
++|+++|.+|||||||+|+|++... .....|.++.+. ..+.++ -.+.++||||.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH 59 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCcc
Confidence 3799999999999999999997542 223333333232 223332 24679999997
No 175
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.17 E-value=2.9e-05 Score=67.16 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD 164 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~ 164 (377)
+.++.+||+. |+ ..........+..+|+++.|+|+..+..........++ .++|.++|+||+|+.....
T Consensus 49 ~~~~~iiDtp--------G~-~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 49 IPGITFIDTP--------GH-EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP 119 (168)
T ss_pred cceEEEEeCC--------Cc-HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH
Confidence 5677888864 33 23333334567899999999999875432222222222 3789999999999975321
Q ss_pred --HHHHHHHHHH-------cCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 165 --RNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 165 --~~~~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.......+.. ....++.+|++.|.|+.+|.+.+.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 120 ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1111111111 125789999999999999888776553
No 176
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.16 E-value=1.2e-06 Score=77.11 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=37.0
Q ss_pred eeeEeecCCCCcchhhhhhhcCCcee--------------ccCCCCceeEEEEEEe--------CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF--------GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~--------------v~~~pgtT~~~~~~~~--------~~~~~l~DTPG~i~ 274 (377)
+|+++|.+|||||||+|+|++...+. .....|+|.+.+...+ .-.+.++||||...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 58999999999999999998642111 1112356655433222 22367999999854
No 177
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.16 E-value=8.9e-06 Score=69.95 Aligned_cols=102 Identities=14% Similarity=0.059 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-------cCCCeEEEEEcc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNRE 157 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-------~~k~~ilVlNK~ 157 (377)
+..+.+||.... .+........++.+|.+++|+|+.++.+... ..+..++ .+.|+++|+||+
T Consensus 44 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~ 114 (162)
T cd04157 44 NLSFTAFDMSGQ---------GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKM 114 (162)
T ss_pred CEEEEEEECCCC---------HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCc
Confidence 455678886433 3344444567899999999999987653211 1233221 257999999999
Q ss_pred CCCCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHH
Q 017100 158 DMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 158 DL~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
|+.+......+...+. .....++.+|+++|.|++++.+.+
T Consensus 115 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 115 DLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred cccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 9975432222222221 112347789999999998887654
No 178
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.16 E-value=7.5e-06 Score=70.96 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||. ||| ..........+..+|++++|+|+.++.+... ..+..++ .+.|+++++||+|+
T Consensus 49 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 49 NARLKFWDL--------GGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred CEEEEEEEC--------CCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 556677775 343 3444555677999999999999976542211 1222222 26799999999998
Q ss_pred CCHH---HHHHHHHHHH----HcCCeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMA---DRNAWATYFA----KQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~---~~~~~~~~~~----~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.+.. +...+.+.+. ..+.+++.+|+++|.|++++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 120 PDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 6543 2233322211 123478999999999998876554
No 179
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.16 E-value=2.4e-06 Score=76.14 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=37.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
..+|+++|.+|||||||+|+|.+.....+.+..+.|. ..+.. +..+.++||||..
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~ 72 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGNIKFTTFDLGGHQ 72 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECCEEEEEEECCCCH
Confidence 4679999999999999999999754322222222222 22222 3467899999975
No 180
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.15 E-value=8.8e-06 Score=70.76 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=66.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE 157 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~ 157 (377)
....+.+||.... .+........++.+|.+++|+|..++.+..+ +..++ .+.|+++|.||+
T Consensus 49 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iiiv~nK~ 117 (166)
T cd04122 49 QKIKLQIWDTAGQ---------ERFRAVTRSYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKA 117 (166)
T ss_pred EEEEEEEEECCCc---------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECc
Confidence 3456778885432 4445555677899999999999987654332 22332 246899999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhH
Q 017100 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRL 196 (377)
Q Consensus 158 DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~ 196 (377)
|+..... .+...++....+..++.+|+++|.|+.++...
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 118 DLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred ccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 9965432 12222333445678899999999999886433
No 181
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.15 E-value=1.6e-06 Score=74.62 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=36.2
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeC---CceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~~~l~DTPG~i 273 (377)
+|+++|+||||||||+|+|+... .+....+++.+.. ....+ ..+.++||||..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence 68999999999999999999643 2334444444322 12222 247789999974
No 182
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.15 E-value=2.8e-06 Score=80.70 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=38.9
Q ss_pred eeeEeecCCCCcchhhhhhhcCCc-----eec------------cCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRM-----CPA------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~-----~~v------------~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
+|+++|.+|+|||||+|+|+.... ..+ +...|+|.+.....+ +..+.++||||...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence 489999999999999999963211 011 124578877544333 45788999999853
No 183
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.15 E-value=1.5e-05 Score=84.03 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCC-eEEEEEccCCCCHHHHH----HHHHHHHHcC
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN----AWATYFAKQG 176 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~~----~~~~~~~~~g 176 (377)
||| +++.+.+...+..+|++++|+|+..+......+...++. +.+ .++|+||+|+++++... .+.+++...+
T Consensus 59 PGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~ 137 (614)
T PRK10512 59 PGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYG 137 (614)
T ss_pred CCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcC
Confidence 787 567777777799999999999998765443333323322 455 57999999998754332 3334444434
Q ss_pred ---CeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 177 ---TKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 177 ---~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
.+++++|+++|.|++.|.+.+.++..
T Consensus 138 ~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 138 FAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 57899999999999999988876643
No 184
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.15 E-value=8e-06 Score=70.98 Aligned_cols=93 Identities=10% Similarity=-0.028 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-----CCCeEEEEEccCCCCHH--HHHHHHHHHHHc
Q 017100 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-----NRKRILVLNREDMISMA--DRNAWATYFAKQ 175 (377)
Q Consensus 108 ~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l~-----~k~~ilVlNK~DL~~~~--~~~~~~~~~~~~ 175 (377)
..........++++|.++.++|+.++.+..+.. +..... +.|+++|+||+|+..+. .......+.+..
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 139 (172)
T cd01862 60 ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN 139 (172)
T ss_pred HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc
Confidence 344445557789999999999998765432221 111122 57999999999998321 112222334455
Q ss_pred C-CeEEEeeCccCCCchhhhhHHHHh
Q 017100 176 G-TKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 176 g-~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+ ..++.+|+++|.|+.++.+.+.+.
T Consensus 140 ~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 140 GNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5 688999999999999887766543
No 185
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.15 E-value=3.6e-06 Score=72.61 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=37.4
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|++.+.. .+...+.++.+.. ...++. .+.++||||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 589999999999999999998643 2444444544321 222332 36789999964
No 186
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.14 E-value=1.2e-05 Score=69.28 Aligned_cols=104 Identities=14% Similarity=0.040 Sum_probs=68.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh------cCCCeEEEE
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL------GNRKRILVL 154 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l------~~k~~ilVl 154 (377)
....+.+||.... .+........+..+|++++|+|.+++.+.... ++.+.. .+.|+++|.
T Consensus 47 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 117 (168)
T cd04119 47 KEVRVNFFDLSGH---------PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCA 117 (168)
T ss_pred eEEEEEEEECCcc---------HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEE
Confidence 4456777886544 33444445678999999999999876443221 122222 246899999
Q ss_pred EccCCCCHH--HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 155 NREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 155 NK~DL~~~~--~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
||+|+.++. .......+.++.+..++.+|+++|.|+.++.+.+.
T Consensus 118 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 118 NKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred EchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999997322 12222333445567899999999999988866543
No 187
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.14 E-value=1.4e-05 Score=81.24 Aligned_cols=106 Identities=23% Similarity=0.254 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHH-HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAK-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADR 165 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~-~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~ 165 (377)
+..+.+||+..... +....+. ..+...+.++.+|++++|+|+..+.+..+..+.....++|+++|+||+|+.+....
T Consensus 262 g~~i~l~DT~G~~~--~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~ 339 (449)
T PRK05291 262 GIPLRLIDTAGIRE--TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDL 339 (449)
T ss_pred CeEEEEEeCCCCCC--CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchh
Confidence 44567777765321 1111221 12345567999999999999988765544332222357899999999999765432
Q ss_pred HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 166 ~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
. ...+..++++|+++|.|+++|.+.+.+.
T Consensus 340 ~------~~~~~~~i~iSAktg~GI~~L~~~L~~~ 368 (449)
T PRK05291 340 E------EENGKPVIRISAKTGEGIDELREAIKEL 368 (449)
T ss_pred h------hccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 2 2234678999999999999887776543
No 188
>PRK13768 GTPase; Provisional
Probab=98.14 E-value=1.2e-05 Score=75.68 Aligned_cols=117 Identities=19% Similarity=0.174 Sum_probs=75.3
Q ss_pred cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhh--cCeEEEEEecCCCCCCCcHHHHHH-------hcCCCeEE
Q 017100 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL--MDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRIL 152 (377)
Q Consensus 82 ~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~--aDlIL~V~Dar~p~~~~~~~l~~~-------l~~k~~il 152 (377)
.....+.|+++||....-. +-.++...+.+.+.+.+ ++++++|+|++......+.....+ ..++|.++
T Consensus 91 ~l~~~~~~~~~~d~~g~~~---~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~ 167 (253)
T PRK13768 91 EIESLDADYVLVDTPGQME---LFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIP 167 (253)
T ss_pred HHHhcCCCEEEEeCCcHHH---HHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3344567999999643300 00012233444455555 899999999987555444333332 23789999
Q ss_pred EEEccCCCCHHHHHHHHHHH----------------------------HHcC--CeEEEeeCccCCCchhhhhHHHHhh
Q 017100 153 VLNREDMISMADRNAWATYF----------------------------AKQG--TKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 153 VlNK~DL~~~~~~~~~~~~~----------------------------~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
|+||+|+.+..+.+...+++ ++.+ ..++.+|++++.|+++|.+.+.+..
T Consensus 168 v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 168 VLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred EEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 99999999776543332222 2224 5788999999999999988877654
No 189
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.14 E-value=1.4e-05 Score=71.42 Aligned_cols=106 Identities=10% Similarity=0.076 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l-~~k~~ilVlNK~DL~ 160 (377)
...+.+||...+ .+........+..+|+++.|+|+..+.+..+. .+.+.. ...|+++|.||+|+.
T Consensus 49 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 49 KVKLQIWDTAGQ---------ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEEEEeCCCc---------HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 345677776443 33444445678899999999999875433221 111112 256899999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.... ...........+..++.+|+++|.|++++.+.+.+..
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 120 GERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred hccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4321 1223333345567899999999999999877665443
No 190
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.14 E-value=3.8e-06 Score=72.96 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=35.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceec-cCCCCceeEEEEEEeCC---ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~~~l~DTPG~ 272 (377)
.+|+++|.+|||||||+|+|........ ....|+......+.++. .+.+.||||-
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 5899999999999999999985432111 11122222223344443 5689999995
No 191
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.14 E-value=3.2e-06 Score=72.93 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=36.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|+|.+.+ ......+..+.+ ...+.++. .+.+.||||.-
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENK-FKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 368999999999999999998654 222222322222 22333432 46799999963
No 192
>CHL00071 tufA elongation factor Tu
Probab=98.14 E-value=2.3e-06 Score=86.00 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=42.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCce---------------eccCCCCceeEEEEEEe---CCceEEEcCCcc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~---------------~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~ 272 (377)
..++|+++|.+|+|||||+|+|++.... ..+-..|+|.+...... +..+.++||||.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence 4578999999999999999999964211 11223799998654444 346899999995
No 193
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.13 E-value=3.7e-05 Score=66.65 Aligned_cols=110 Identities=14% Similarity=0.016 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCc--CCCchHHHHHHHHHHHH-hhhcCeEEEEEecCCCCCCC-cH--HHHHHh----cCCCeEEEEEc
Q 017100 87 DADLYYWTKSLRPV--QWYPGHIAKTEKELKDQ-LKLMDVVIEVRDARIPLSTT-HP--LMDQWL----GNRKRILVLNR 156 (377)
Q Consensus 87 ~~d~vi~d~~L~~~--qw~PGh~~~~~k~l~~~-i~~aDlIL~V~Dar~p~~~~-~~--~l~~~l----~~k~~ilVlNK 156 (377)
+..+.+||....-. .|... ......... ...+|++++|+|+.++.+.. .. ++...+ .+.|+++|+||
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~---~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK 122 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERN---TIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNK 122 (168)
T ss_pred ceEEEEEECCCcCCccccCCc---hHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEc
Confidence 46788899765411 11111 111111111 23368999999998765421 11 111111 26899999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 157 EDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 157 ~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+|+..........++....+..++.+|+++|.|++++.+.+.+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 123 IDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACE 165 (168)
T ss_pred cccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHH
Confidence 9998765443322333334567899999999999988766543
No 194
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.13 E-value=1.8e-06 Score=73.07 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=31.3
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCcc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~ 272 (377)
+|+++|.+|||||||+|+|.+... ... .|....+ .. .++||||.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---~~~--~t~~~~~---~~--~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---LYK--KTQAVEY---ND--GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---ccc--cceeEEE---cC--eeecCchh
Confidence 589999999999999999997642 111 1322222 22 68999997
No 195
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.13 E-value=2.4e-06 Score=73.24 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=35.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.+|+++|.+|||||||+|+|.+.. .......|+.+. ..+.++. .+.++||||--
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 479999999999999999999654 222333333322 1223332 25679999963
No 196
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.13 E-value=1.4e-05 Score=72.09 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=69.3
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEE
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLN 155 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l-----~~k~~ilVlN 155 (377)
....+.+||.... .+........+..+|.+++|+|..++.+..+. ++.... .+.|+++|.|
T Consensus 48 ~~~~l~l~Dt~G~---------~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N 118 (201)
T cd04107 48 TVVRLQLWDIAGQ---------ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN 118 (201)
T ss_pred CEEEEEEEECCCc---------hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence 3456777886443 33444455778999999999999876554332 122221 2568999999
Q ss_pred ccCCCCHH--HHHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHHHH
Q 017100 156 REDMISMA--DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 156 K~DL~~~~--~~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
|+|+.+.. ......++.+..+ ..++.+|+++|.|++++.+.+.+
T Consensus 119 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~ 165 (201)
T cd04107 119 KCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVK 165 (201)
T ss_pred CCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 99996321 1223334445556 57899999999999987665543
No 197
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.12 E-value=1.8e-05 Score=79.53 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=69.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CCCcH-HHH--HHhcCCCeEEEEEccCCCCHH
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHP-LMD--QWLGNRKRILVLNREDMISMA 163 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~-~~~~~-~l~--~~l~~k~~ilVlNK~DL~~~~ 163 (377)
..+.+||. ||| +.+.+.+...+..+|++++|+|++.+. ..... .+. ..+..++.++++||+|+.+.+
T Consensus 80 ~~i~liDt--------PGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 80 RRVSFVDA--------PGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred cEEEEEEC--------CCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence 34556664 676 556677777788999999999999764 22211 222 222346789999999998754
Q ss_pred HHH----HHHHHHHHc---CCeEEEeeCccCCCchhhhhHHHHh
Q 017100 164 DRN----AWATYFAKQ---GTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 164 ~~~----~~~~~~~~~---g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
... +..+++... +..++++|+++|.|++.|.+.+...
T Consensus 151 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 151 KALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 332 222222222 4578999999999999988887764
No 198
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.12 E-value=7.4e-06 Score=73.59 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMIS 161 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~~ 161 (377)
...+.+||...+ .+........+..+|.+|+|+|..++.+..+.. +.+...+.|+++|.||+||..
T Consensus 54 ~~~l~iwDt~G~---------~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 54 RVKLQLWDTSGQ---------GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred EEEEEEEeCCCc---------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 355666775433 455555557789999999999998876654432 212223679999999999964
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 162 ~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
... .+....+.++.+..++.+||++|.|++++.+.+.
T Consensus 125 ~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 125 KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 221 1222233455678899999999999988755544
No 199
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.12 E-value=4.8e-06 Score=72.30 Aligned_cols=103 Identities=10% Similarity=0.061 Sum_probs=64.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D 158 (377)
.+..+.+||.... .+.......+++.+|++++|+|+.++.+..+ ..+..++. +.|++++.||+|
T Consensus 42 ~~~~~~l~D~~G~---------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 112 (159)
T cd04150 42 KNISFTVWDVGGQ---------DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQD 112 (159)
T ss_pred CCEEEEEEECCCC---------HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCC
Confidence 3456777886443 4445555677999999999999976543221 12333322 479999999999
Q ss_pred CCCHHHHHHHHHHH-----HHcCCeEEEeeCccCCCchhhhhHH
Q 017100 159 MISMADRNAWATYF-----AKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 159 L~~~~~~~~~~~~~-----~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
+.+.....+..+.+ ......++.+||++|.|++++.+.+
T Consensus 113 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 113 LPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred CCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 96432111211222 1112345679999999998876554
No 200
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.12 E-value=1.7e-05 Score=70.32 Aligned_cols=105 Identities=12% Similarity=0.021 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--H-HHH---hcCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--M-DQW---LGNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l-~~~---l~~k~~ilVlNK~DL~ 160 (377)
.+++.+||...+ ++........++.+|++++|+|..++.+..+.. + ... ..+.|+++|.||+||.
T Consensus 48 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 48 IIELALWDTAGQ---------EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred EEEEEEEECCCc---------hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 346778886543 333333345689999999999998765543321 1 111 1367999999999996
Q ss_pred CHH------HHHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMA------DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~------~~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+.. ....-.++....+. .++.+|+++|.|+.++.+.+.+.
T Consensus 119 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 165 (187)
T cd04132 119 KDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEE 165 (187)
T ss_pred hCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 532 01122223344565 78999999999999876655443
No 201
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.12 E-value=4e-06 Score=72.86 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=34.5
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|+|.+.. ......+..+.+ ...+.+++ .+.++||||..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 69999999999999999998654 222222222222 22233332 25689999963
No 202
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.11 E-value=3.2e-06 Score=73.36 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=37.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.+|+++|.+|||||||+|++.+.. ......|..+.+. ..+.+++ .+.++||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 579999999999999999998643 2333344444333 2233332 46889999953
No 203
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.10 E-value=2.4e-06 Score=75.33 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=35.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeC---CceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~---~~~~l~DTPG~i 273 (377)
.+|+++|.||||||||+|++++.. ......| ++.+ ...+..+ -.+.++||||.-
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-FVESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CccccCc-chhhhEEEEEEECCEEEEEEEEECCChH
Confidence 369999999999999999999653 2222333 3322 1122222 246799999974
No 204
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.10 E-value=9.6e-06 Score=70.90 Aligned_cols=103 Identities=12% Similarity=-0.004 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMIS 161 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~~k~~ilVlNK~DL~~ 161 (377)
..++.+||...+ ++........+..+|+++.|+|..++.+..+. ++.+...+.|+++|.||+|+..
T Consensus 48 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~ 118 (166)
T cd00877 48 KIRFNVWDTAGQ---------EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD 118 (166)
T ss_pred EEEEEEEECCCC---------hhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc
Confidence 456778887544 22222223457889999999999876544321 1222223689999999999974
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 162 ~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
......-.++....+..++.+||++|.|++++.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 119 RKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred ccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 3321121233344567899999999999988866554
No 205
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.10 E-value=1e-05 Score=71.23 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMI 160 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL~ 160 (377)
..+.+||... + ++........++.+|.+++|+|+.++.+..+.. +.... .+.|+++|.||+|+.
T Consensus 63 ~~~~i~Dt~G--------~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 63 IHLQLWDTAG--------Q-ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEEeCCC--------h-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 4567888643 2 455555667899999999999998765443321 11111 256899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+... .+...++..+.+..++.+|+++|.|++++.+.+.+
T Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 134 DQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred hcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5321 12223334455678899999999999988766543
No 206
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.10 E-value=3.9e-06 Score=74.92 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=36.2
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCcee---EEEEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~---~~~~~~~~~---~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|++.+.. ...+....|+. ....+.+++ .+.++||||--
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence 369999999999999999999644 33323333332 223344443 24589999974
No 207
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.10 E-value=8.8e-06 Score=72.49 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=65.8
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---cCCCeEEEEEccCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---GNRKRILVLNREDMI 160 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l---~~k~~ilVlNK~DL~ 160 (377)
....+.+||...+ .+........++.+|+++.|+|..++.+..+. .+.... .....++|.||+||.
T Consensus 47 ~~~~l~iwDt~G~---------~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~ 117 (182)
T cd04128 47 TEITFSIWDLGGQ---------REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred EEEEEEEEeCCCc---------hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 3467788887654 33334444678999999999999876554331 122221 123347899999995
Q ss_pred C---HHH---H-HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 161 S---MAD---R-NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 161 ~---~~~---~-~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
. ..+ . +...++.+..+..++++||++|.|++++.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~ 162 (182)
T cd04128 118 ADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVL 162 (182)
T ss_pred ccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 2 111 1 112223345567889999999999998876554
No 208
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.09 E-value=1.5e-05 Score=69.35 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-----CCCc-H-----HHHHH--------hcC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-----STTH-P-----LMDQW--------LGN 147 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~-----~~~~-~-----~l~~~--------l~~ 147 (377)
+..+.+||....... ... .++....+...+..+|+|++|+|+.++. ...+ . ++... +.+
T Consensus 43 ~~~~~i~DtpG~~~~-~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (176)
T cd01881 43 GARIQVADIPGLIEG-ASE-GRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA 120 (176)
T ss_pred CCeEEEEeccccchh-hhc-CCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 556678886442100 000 1122234456688899999999998763 1111 0 11111 236
Q ss_pred CCeEEEEEccCCCCHHHHHHHH--HHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 148 RKRILVLNREDMISMADRNAWA--TYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 148 k~~ilVlNK~DL~~~~~~~~~~--~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
+|+++|+||+|+........|. ......+..++.+|++.+.|++++.+.+.
T Consensus 121 ~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 121 KPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred CCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 8999999999998877665552 22223356789999999999988766543
No 209
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.09 E-value=4.1e-06 Score=71.15 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=35.9
Q ss_pred eeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeC-CceEEEcCCccc
Q 017100 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG-KDLEFLDSPGII 273 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~-~~~~l~DTPG~i 273 (377)
|+++|.+|||||||+|+|.+.. ......|.+..+......+ ..+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 7999999999999999999754 2333344333333222222 357899999963
No 210
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.09 E-value=3.8e-06 Score=72.34 Aligned_cols=54 Identities=26% Similarity=0.328 Sum_probs=35.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeC-----CceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-----KDLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-----~~~~l~DTPG~ 272 (377)
++|+++|.+|||||||+|++++.. ......|..+.+.. .+.+. -.+.++||||-
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 369999999999999999999643 22222343333332 22222 24789999995
No 211
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.09 E-value=2.3e-05 Score=72.76 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=69.9
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEcc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNRE 157 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~------~l~~~l~~k~~ilVlNK~ 157 (377)
.....++.+||+..+ +++.......+..+|++++|+|..++.+..+. ++.+...+.|+++|.||+
T Consensus 57 ~~~~v~l~iwDTaG~---------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~ 127 (232)
T cd04174 57 EEQRVELSLWDTSGS---------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKT 127 (232)
T ss_pred CCEEEEEEEEeCCCc---------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 344567888887654 44444444678999999999999887665431 122222367899999999
Q ss_pred CCCCH------------H--HHHHHHHHHHHcCC-eEEEeeCccCC-CchhhhhHH
Q 017100 158 DMISM------------A--DRNAWATYFAKQGT-KVIFSNGQLGM-GTMKLSRLA 197 (377)
Q Consensus 158 DL~~~------------~--~~~~~~~~~~~~g~-~vi~iSa~~g~-gi~~L~~~l 197 (377)
||... . ..++..++.++.+. .++.+||++|. |++++...+
T Consensus 128 DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~ 183 (232)
T cd04174 128 DLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSA 183 (232)
T ss_pred ccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHH
Confidence 98531 0 11233344556676 58889999997 788875544
No 212
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.08 E-value=1.8e-05 Score=68.17 Aligned_cols=103 Identities=13% Similarity=-0.087 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL 159 (377)
...+.+||.... .+........+..+|.++.|+|+.++.+.... .+.+.. .+.|+++|.||+|+
T Consensus 49 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl 119 (164)
T cd04145 49 WAILDILDTAGQ---------EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119 (164)
T ss_pred EEEEEEEECCCC---------cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccc
Confidence 345667776443 33444555778999999999999876543221 111111 25699999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
..... .....++.+..+..++.+|+++|.|++++.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 120 EHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred cccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 75431 1122233445567889999999999988765543
No 213
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.08 E-value=1.7e-05 Score=69.15 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=66.8
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL 159 (377)
.+.++.+||.... ......+...+..+|++++|+|..++.+..+. .+ .....+.|+++|.||+|+
T Consensus 45 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl 115 (166)
T cd01893 45 ERVPTTIVDTSSR---------PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL 115 (166)
T ss_pred CeEEEEEEeCCCc---------hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 4456778886543 22333445567999999999999876654431 11 111236799999999999
Q ss_pred CCHHHH---HHHHHHH-HHc-C-CeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMADR---NAWATYF-AKQ-G-TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~~---~~~~~~~-~~~-g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+.... +.....+ .+. . ..++.+|+++|.|++++.+.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 116 RDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred ccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHH
Confidence 764431 1211111 111 1 37889999999999888766544
No 214
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.08 E-value=1.2e-05 Score=69.92 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=66.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~D 158 (377)
...+.+||.... .+........++.+|.++.|+|..++.+.. .+..++ ...|+++|.||+|
T Consensus 49 ~~~~~l~Dt~g~---------~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 49 RVKLQIWDTAGQ---------ERYRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEEEECCCh---------HHHHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence 345677875432 344444457789999999999987654332 222222 2568999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
|.+... ...-.+.....+..++.+|+++|.|+.++.+.+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 118 MEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred cCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 975432 1222233445667899999999999988766554
No 215
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.07 E-value=7.4e-06 Score=72.29 Aligned_cols=104 Identities=10% Similarity=0.047 Sum_probs=64.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||...+ .+........++.+|.+++|+|+.++.+..+ ..+..++ .+.|+++|.||+||
T Consensus 56 ~~~l~l~D~~G~---------~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 56 NISFTVWDVGGQ---------DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred CEEEEEEECCCC---------hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 456778886544 3444445567899999999999887643221 1233332 24689999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.......+..+.+. .....++.+||++|.|+.++.+.+.+
T Consensus 127 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 171 (175)
T smart00177 127 PDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSN 171 (175)
T ss_pred ccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHH
Confidence 64321122212111 11123557999999999888766543
No 216
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.07 E-value=4.1e-06 Score=75.75 Aligned_cols=54 Identities=31% Similarity=0.552 Sum_probs=37.3
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|++.+.. ......|.++.+.. .+..++ .+.++||||..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~-f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE-FPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC-CCcccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 68999999999999999998654 22233455544432 233333 35699999975
No 217
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.07 E-value=6e-06 Score=71.80 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=35.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCce--eEEEEEEeC---CceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~---~~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|+|.+.+- .....|.++ .....+..+ -.+.+.||||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 4799999999999999999997542 222223222 222222222 247899999974
No 218
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.07 E-value=3.1e-06 Score=72.88 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=36.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.+|+++|.||||||||+|++.... .+...+.|+.+. ..+.++. .+.+.||||.-
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 479999999999999999998643 223333344332 2233332 35679999974
No 219
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.07 E-value=1.8e-05 Score=68.89 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDM 159 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL 159 (377)
..+.+||.. |+ .+........++.+|++++|+|+.++.+.. .+..++ .+.|+++|.||+|+
T Consensus 52 ~~l~l~D~~--------g~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 52 IKLQIWDTA--------GQ-ERFRTITTAYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDM 120 (167)
T ss_pred EEEEEEeCC--------ch-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 456677753 32 444555557789999999999987755432 233322 24689999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.+... .+...++....+..++.+|+++|.|++++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 121 EEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 74321 2223344455677889999999999988765543
No 220
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.07 E-value=4.2e-06 Score=72.18 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=34.3
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|+|....... ..|.+..+...+.. +..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFNVETVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcCeEEEEECCEEEEEEECCCCH
Confidence 48999999999999999997654322 22211111112222 3457899999974
No 221
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.07 E-value=3.9e-05 Score=69.27 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCC-eEEEEEccCCCCHHHHHH-----HHHHHHHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRNA-----WATYFAKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~~~-----~~~~~~~~ 175 (377)
|||. .+.+.+...+..+|+++.|+|+..+......++..++. ++| .++++||+|++...+..+ ..+++.+.
T Consensus 73 PG~~-~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 73 PGHA-DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred cCHH-HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 8874 56677777899999999999998765544434333332 566 678899999975433222 22334443
Q ss_pred C-----CeEEEeeCccCCCch
Q 017100 176 G-----TKVIFSNGQLGMGTM 191 (377)
Q Consensus 176 g-----~~vi~iSa~~g~gi~ 191 (377)
| ..++++||.+|.++.
T Consensus 152 g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred cccccCCeEEEeeCccccCCC
Confidence 3 568999999988753
No 222
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.07 E-value=3.6e-06 Score=72.89 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=36.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
.+|+++|.+|||||||+|++.... .....+.|+.+.. .+.++. .+.+.||||.-
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence 479999999999999999998532 3344444554422 233332 34689999974
No 223
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=3.7e-06 Score=74.26 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=83.0
Q ss_pred cccchhhh--cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc-----
Q 017100 74 IEAYEEEC--DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----- 146 (377)
Q Consensus 74 ig~gk~E~--~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~----- 146 (377)
||.-|+-. .+.+..+.+.|||++.+ ++.......+.+.++.+|.|+|..+..+... +..|+.
T Consensus 38 IGaaF~tktv~~~~~~ikfeIWDTAGQ---------ERy~slapMYyRgA~AAivvYDit~~~SF~~--aK~WvkeL~~~ 106 (200)
T KOG0092|consen 38 IGAAFLTKTVTVDDNTIKFEIWDTAGQ---------ERYHSLAPMYYRGANAAIVVYDITDEESFEK--AKNWVKELQRQ 106 (200)
T ss_pred cccEEEEEEEEeCCcEEEEEEEEcCCc---------ccccccccceecCCcEEEEEEecccHHHHHH--HHHHHHHHHhh
Confidence 66666633 44555678889998776 6666666688999999999999987655433 333332
Q ss_pred -C--CCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 147 -N--RKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 147 -~--k~~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
. .-+-+|.||+||....+ .++-..|..+.|..++.+|+++|.|+++|...|.+.
T Consensus 107 ~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 107 ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHh
Confidence 2 22346899999998443 344556777889999999999999999886665543
No 224
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.06 E-value=5.1e-06 Score=71.79 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=35.4
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|++.+... ......++.+.. ...++. .+.++||||..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 689999999999999999996542 223333443322 222332 35689999974
No 225
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.06 E-value=5e-06 Score=74.00 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=36.3
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
..+|+++|.+|||||||+|+|.+.......+..+.+. ..+.+ +..+.++||||-.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence 4579999999999999999999754322222222221 22223 3467899999953
No 226
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.06 E-value=1.6e-05 Score=68.45 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDM 159 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL 159 (377)
..+.+||. ||+ .+........++.+|++++|+|.+++.+... +..++ .+.|+++|.||+|+
T Consensus 49 ~~~~l~D~--------~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 49 VKLQIWDT--------AGQ-ERFRSITSSYYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEEEC--------CCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 45667775 332 4555566677899999999999987654422 22222 25799999999998
Q ss_pred CCHH--HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~--~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.... ..+...++.++.+..++.+|+++|.|++++.+.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 118 EDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 7532 122233334456788999999999999988766544
No 227
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=1.5e-05 Score=70.64 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=76.0
Q ss_pred hhcccccCCcEEEEcCCCCCcC-----CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------c-
Q 017100 80 ECDWADLDADLYYWTKSLRPVQ-----WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G- 146 (377)
Q Consensus 80 E~~~~~~~~d~vi~d~~L~~~q-----w~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-------~- 146 (377)
|....+.|+|+.+-..++..-. |..+.++++...+..+.+.++-||+|+|.....+..+ +.+|+ .
T Consensus 36 e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~--v~~Wi~Ei~~~~~~ 113 (205)
T KOG0084|consen 36 ESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNN--VKRWIQEIDRYASE 113 (205)
T ss_pred hhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhh--HHHHHHHhhhhccC
Confidence 4455555555544443333322 5555559999999999999999999999988766655 33333 2
Q ss_pred CCCeEEEEEccCCCCHHHHH--HHHHHHHHcCCe-EEEeeCccCCCchhh
Q 017100 147 NRKRILVLNREDMISMADRN--AWATYFAKQGTK-VIFSNGQLGMGTMKL 193 (377)
Q Consensus 147 ~k~~ilVlNK~DL~~~~~~~--~~~~~~~~~g~~-vi~iSa~~g~gi~~L 193 (377)
+.+.++|.||+|+.+..... .-.++..+.+.. ++.+||+.+.++++.
T Consensus 114 ~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 114 NVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred CCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 45999999999997654321 222344566777 888999999877654
No 228
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.05 E-value=1.1e-05 Score=79.49 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=38.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC-----ceeccCCCCceeEEEEEEe--CCceEEEcCCccccCCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMRI 277 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~-----~~~v~~~pgtT~~~~~~~~--~~~~~l~DTPG~i~~~~ 277 (377)
.+++|||+|-+|+|||||||+|.|-. .+.+|- ..||.....+.- -.++.+.|.||+-.+.+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 35789999999999999999998622 222322 246666666654 35899999999965544
No 229
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.05 E-value=9.9e-05 Score=65.78 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHh---hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGH-IAKTEKELKDQL---KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh-~~~~~k~l~~~i---~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~ 160 (377)
+.++.+||...-...-.|.. .++....+...+ +.+++++.|+|+..+......++..++. +.|+++++||+|+.
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 35788888765322111222 233333333344 4557899999988776655444545443 67899999999998
Q ss_pred CHHHHHH----HHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 161 SMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 161 ~~~~~~~----~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
+..+.+. ....+......++++|++.+.|++++.+.+.++.+
T Consensus 149 ~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 149 KKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 7654433 22333333568899999999999999888776543
No 230
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.05 E-value=5.6e-06 Score=72.61 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=37.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|..... ....|.++.+...+.. .-.+.+.||||.-
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~--~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS--VTTIPTVGFNVETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC--ccccCCcccceEEEEECCEEEEEEECCCCH
Confidence 46899999999999999999975432 2233433333333332 2357899999984
No 231
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.04 E-value=6.5e-06 Score=71.80 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=35.4
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeC---CceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~~~l~DTPG~i 273 (377)
++|+++|.||||||||+|++.+..- ......++.+. ..+.++ -.+.++||||.-
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE 60 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcc
Confidence 4799999999999999999986542 22222233221 222333 246789999975
No 232
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.04 E-value=3.5e-06 Score=72.08 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=37.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeC---CceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~---~~~~l~DTPG~i~ 274 (377)
+|+++|.+|||||||+|+|++.. ..+....+|.+... +..+ -.+.++||||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence 48999999999999999999654 44444555554322 2333 2467899999753
No 233
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.04 E-value=1.4e-05 Score=67.74 Aligned_cols=91 Identities=7% Similarity=-0.018 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHH-----Hc
Q 017100 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQ 175 (377)
Q Consensus 108 ~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~~~~~~~-----~~ 175 (377)
.+........+..+|.+++|+|+.++..... ..+.++. .++|+++|+||+|+.+..........+. ..
T Consensus 55 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 134 (159)
T cd04159 55 PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDR 134 (159)
T ss_pred HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCC
Confidence 4445556678999999999999986533211 1222322 2679999999999976543333333221 12
Q ss_pred CCeEEEeeCccCCCchhhhhHHH
Q 017100 176 GTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
...++.+|+++|.|++++.+.+.
T Consensus 135 ~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 135 EVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred ceEEEEEEeccCCChHHHHHHHh
Confidence 25678999999999988877654
No 234
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.04 E-value=6.2e-06 Score=73.80 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=35.0
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCC-CCceeEE--EEEEeCC---ceEEEcCCcc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVL--KWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~-pgtT~~~--~~~~~~~---~~~l~DTPG~ 272 (377)
+|+++|.+|||||||+|++.+.. ...+.. +.++.+. ..+.+++ .+.++||||-
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGA-FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence 68999999999999999998654 223322 2222232 2233333 4678999995
No 235
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.04 E-value=3.9e-06 Score=73.13 Aligned_cols=53 Identities=26% Similarity=0.249 Sum_probs=34.5
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCc----eeEEEEEEeCCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV----TRVLKWVRFGKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgt----T~~~~~~~~~~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|+|.+..- .+..|.+ |.........-.+.++||||.-
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PENVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 689999999999999999986542 2223332 2222111112256799999974
No 236
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.03 E-value=1.1e-05 Score=71.82 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=65.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (377)
.+..+.+||...+ .+........++.+|.+++|+|+.++.+..+ .++.+++ .+.|+++|.||+|
T Consensus 59 ~~~~~~i~D~~Gq---------~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~D 129 (181)
T PLN00223 59 KNISFTVWDVGGQ---------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
T ss_pred CCEEEEEEECCCC---------HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCC
Confidence 3456777876443 4455555677999999999999987643322 2233333 2578999999999
Q ss_pred CCCHHHHHHHHHHHHHcC-----CeEEEeeCccCCCchhhhhHHH
Q 017100 159 MISMADRNAWATYFAKQG-----TKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 159 L~~~~~~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
+..........+.+.-.. ..++.+||++|.|+.++.+.+.
T Consensus 130 l~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 865433233222221111 1244689999999988766553
No 237
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.03 E-value=1.3e-05 Score=69.60 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDM 159 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL 159 (377)
..+.+||.. |+ .+........++.+|.+++|+|+.++.+..+ +..++ .+.|+++|.||+|+
T Consensus 51 ~~~~i~D~~--------G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~--l~~~~~~~~~~~~~~~~~iiv~nK~Dl 119 (166)
T cd01869 51 IKLQIWDTA--------GQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNN--VKQWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred EEEEEEECC--------Cc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHHh--HHHHHHHHHHhCCCCCcEEEEEEChhc
Confidence 455667643 32 3455555677899999999999987554322 22222 25799999999998
Q ss_pred CCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
...... +....+....+.+++.+|+++|.|+.++.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 120 TDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 654321 222223344567899999999999988766554
No 238
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.03 E-value=7.1e-06 Score=72.96 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=36.0
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe------CCceEEEcCCcc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGI 272 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~------~~~~~l~DTPG~ 272 (377)
.++|+++|.+|||||||+|++..... +...|.++.+...+.+ +-.+.++||||.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 62 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ 62 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCCceEEEEEECCCc
Confidence 46899999999999999999986542 2334422222222222 124789999996
No 239
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.03 E-value=2.5e-05 Score=67.12 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... .+........+..+|+++.|+|+..+.+.... .+.... .+.|++++.||+|+
T Consensus 42 ~~~~~i~D~~G~---------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWDVGGQ---------DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDL 112 (158)
T ss_pred CEEEEEEECCCC---------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCC
Confidence 566788885443 23334445678999999999999876432221 222222 26799999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.......+..+.+. ....+++.+|+++|.|+.++.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 113 PGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred ccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 86442222222222 122468899999999998876554
No 240
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.02 E-value=2.7e-05 Score=78.39 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CCCcHH-HHHH--hcCCCeEEEEEccCCCCHHH
Q 017100 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPL-MDQW--LGNRKRILVLNREDMISMAD 164 (377)
Q Consensus 89 d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~-~~~~~~-l~~~--l~~k~~ilVlNK~DL~~~~~ 164 (377)
.+.+||. ||| .++.+.+...+..+|++++|+|++.+. .....+ +..+ ...++.++|+||+|+.+.+.
T Consensus 86 ~i~liDt--------PG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 86 RVSFVDA--------PGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKER 156 (411)
T ss_pred EEEEEEC--------CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchh
Confidence 4556664 666 456666666677889999999999764 222222 2222 22356899999999987543
Q ss_pred HH----HHHHHHHH---cCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 165 RN----AWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 165 ~~----~~~~~~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.. ....++.. .+..++++|+++|.|++.|.+.+...
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 22 22222222 14678999999999999988887664
No 241
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.02 E-value=5.6e-06 Score=75.65 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=37.9
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeCC----ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK----DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~----~~~l~DTPG~ 272 (377)
++|+++|.+|||||||+|+|.+.. ......|.++.+... +.++. .+.+.||||-
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 368999999999999999999643 334445555555432 33322 4679999995
No 242
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.02 E-value=4.9e-06 Score=72.38 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=34.8
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCC---CceeEEEEEEeC---CceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP---GVTRVLKWVRFG---KDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p---gtT~~~~~~~~~---~~~~l~DTPG~i~ 274 (377)
++|+++|.+|||||||+|++++.. ......| .+++ .....+ ..+.++||||.-.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTYR--QVISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCcchheEE--EEEEECCEEEEEEEEECCCCCc
Confidence 579999999999999999998654 2222122 1221 112222 2467999999853
No 243
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.02 E-value=1.6e-05 Score=72.57 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc----CCCeEEEEEcc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG----NRKRILVLNRE 157 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l~----~k~~ilVlNK~ 157 (377)
...+.+||...+ ..........+..+|++++|+|..++.+..+.. +.+... ..|+++|.||+
T Consensus 49 ~~~~~i~Dt~G~---------~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~ 119 (215)
T cd04109 49 NVTLQVWDIGGQ---------SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKT 119 (215)
T ss_pred EEEEEEEECCCc---------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECc
Confidence 345677776432 444455556789999999999998875543321 111111 23688999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 158 DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
||..... ......+.+..+..++++||++|.|++++.+.+.+
T Consensus 120 DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~ 163 (215)
T cd04109 120 DLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAA 163 (215)
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 9974321 11222333445677899999999999988766543
No 244
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.02 E-value=2.6e-05 Score=71.81 Aligned_cols=103 Identities=11% Similarity=0.000 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~ 160 (377)
..++.+||..... +........++.+|++|+|+|..++.+..+.. +..+. .+.|+++|.||+||.
T Consensus 43 ~~~l~iwDt~G~e---------~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 43 PYNISIWDTAGRE---------QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEEEEEeCCCcc---------cchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 3567888876552 22333345689999999999998875544321 22121 246899999999997
Q ss_pred CH-------------------HH--HHHHHHHHHHcC--------------CeEEEeeCccCCCchhhhhHHH
Q 017100 161 SM-------------------AD--RNAWATYFAKQG--------------TKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 161 ~~-------------------~~--~~~~~~~~~~~g--------------~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.. .. .++...+.++.+ ..++++||++|.|++++...+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 114 EEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred cccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 51 10 122333333333 4688999999999988755544
No 245
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.02 E-value=6.3e-06 Score=75.25 Aligned_cols=58 Identities=29% Similarity=0.400 Sum_probs=37.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccC-------CCCceeEEE--EEEe-----CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLK--WVRF-----GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~-------~pgtT~~~~--~~~~-----~~~~~l~DTPG~i~ 274 (377)
-.++|++||.++-|||||+|.|.+++....+. .|-|| .+. ..-+ .-++.++|||||-.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~-eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTT-EIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceE-EEEeeeeeeeecceEEEEEEecCCCccc
Confidence 45789999999999999999998654333222 22222 211 1111 12467999999964
No 246
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.02 E-value=2.2e-05 Score=69.04 Aligned_cols=102 Identities=11% Similarity=0.048 Sum_probs=64.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... ..........++.+|++++|+|+.++.+... ..+.+++ .+.|+++++||+|+
T Consensus 58 ~~~~~l~D~~G~---------~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 58 NIRFLMWDIGGQ---------ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred CeEEEEEECCCC---------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 456778886543 3344444567899999999999987643221 2233333 25799999999998
Q ss_pred CCHHHHHHHHHHH-----HHcCCeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMADRNAWATYF-----AKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~~~~~~~~~-----~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.......+..+.+ ...+..++.+||++|.|++++.+.+
T Consensus 129 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 129 KGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 6422112222222 1223467899999999998876554
No 247
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.02 E-value=8.2e-06 Score=70.85 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=35.5
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE-EEEEEeC---CceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG---KDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~~~~~~~---~~~~l~DTPG~i~ 274 (377)
++|+++|.+|||||||+|+|++.+. .....|..... ....... -.+.++||||...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 4789999999999999999997542 22222221111 1111221 2478999999864
No 248
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.01 E-value=1.5e-05 Score=68.34 Aligned_cols=101 Identities=10% Similarity=-0.045 Sum_probs=64.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMI 160 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~ 160 (377)
..+.+||.... .+........+..+|.++.|+|..+..+..+. .+.++. .+.|+++|.||+|+.
T Consensus 49 ~~~~i~Dt~G~---------~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 49 CLLDILDTAGQ---------EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEEEECCCC---------cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 34556776443 33334444678899999999998765432221 122221 267999999999997
Q ss_pred CHHH-HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 161 SMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 161 ~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.... ......+....+..++.+|+++|.|++++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 120 ARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred cceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 5322 122333344557789999999999998876554
No 249
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.01 E-value=8.4e-06 Score=71.17 Aligned_cols=103 Identities=13% Similarity=-0.054 Sum_probs=63.2
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh---cCCCeEEEEEccCC
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDM 159 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l---~~k~~ilVlNK~DL 159 (377)
..+..+.+||...+ .+........++.+|.+++|+|+.++.+... ..+..+. .+.|+++|.||+|+
T Consensus 41 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl 111 (164)
T cd04162 41 TQDAIMELLEIGGS---------QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDL 111 (164)
T ss_pred eCCeEEEEEECCCC---------cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCC
Confidence 34566778886443 2333444467999999999999987653221 1233333 36899999999998
Q ss_pred CCHHHHHHHHHH-----H-HHcCCeEEEeeCcc------CCCchhhhhH
Q 017100 160 ISMADRNAWATY-----F-AKQGTKVIFSNGQL------GMGTMKLSRL 196 (377)
Q Consensus 160 ~~~~~~~~~~~~-----~-~~~g~~vi~iSa~~------g~gi~~L~~~ 196 (377)
..........+. + ++.+..++.+|+++ +.|++++.+.
T Consensus 112 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~ 160 (164)
T cd04162 112 PAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred cCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence 654332221111 1 23355667788877 7777665443
No 250
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.01 E-value=1.8e-05 Score=78.96 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=61.2
Q ss_pred HHHHHHHhhhcCeEEEEEecCCC---CCCCc-HHHHHHh-------cCCCeEEEEEccCCCCHHHHHHHHHHHHH-cC--
Q 017100 111 EKELKDQLKLMDVVIEVRDARIP---LSTTH-PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAK-QG-- 176 (377)
Q Consensus 111 ~k~l~~~i~~aDlIL~V~Dar~p---~~~~~-~~l~~~l-------~~k~~ilVlNK~DL~~~~~~~~~~~~~~~-~g-- 176 (377)
...+.+.++++|++++|+|+... ....+ ..+.+.+ .++|.++|+||+|+.+..+.......+.+ .+
T Consensus 228 g~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~ 307 (390)
T PRK12298 228 GIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWE 307 (390)
T ss_pred HHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCC
Confidence 34455679999999999998722 11111 1121111 25899999999999876655444444433 23
Q ss_pred CeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 177 TKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 177 ~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
..++++|++++.|+++|.+.+.++..
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 36899999999999998777765543
No 251
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.01 E-value=6.1e-06 Score=72.22 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=36.4
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCcc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~ 272 (377)
+|+++|.+|||||||+|+|.+.......+..|.++. .+.. +..+.++||||-
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~ 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGG 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCc
Confidence 378999999999999999997532233444455432 2233 346789999995
No 252
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.01 E-value=6.1e-06 Score=70.70 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=35.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|+|.+... .....+.++.+. ..+.... .+.++||||-.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKF-NEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 689999999999999999996542 222222232222 2233222 46799999953
No 253
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.00 E-value=2.4e-05 Score=68.90 Aligned_cols=105 Identities=10% Similarity=-0.090 Sum_probs=68.7
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNR 156 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l--~~k~~ilVlNK 156 (377)
......+.+||...+ .+........+..+|.++.|+|..++.+..+.. +.+.. .+.|+++|.||
T Consensus 46 ~~~~~~l~i~Dt~G~---------~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK 116 (172)
T cd04141 46 DNEPALLDILDTAGQ---------AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNK 116 (172)
T ss_pred CCEEEEEEEEeCCCc---------hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 334456778886443 334444456788999999999998876655432 22221 25799999999
Q ss_pred cCCCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 157 EDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 157 ~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
+|+...... ..-.++.++.+..++.+||+.|.|++++.+.+
T Consensus 117 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 117 VDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred hhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 998543211 11222334557788999999999998875544
No 254
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.00 E-value=4.4e-05 Score=67.56 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=64.5
Q ss_pred cEEEEcCCCCCcCCCchH-HHHHHHHHHHHhh---hcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCH
Q 017100 89 DLYYWTKSLRPVQWYPGH-IAKTEKELKDQLK---LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (377)
Q Consensus 89 d~vi~d~~L~~~qw~PGh-~~~~~k~l~~~i~---~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~ 162 (377)
++++||...-...--+.. .......+...+. .+|.+++|+|++.+.+..+.++.+++. ++|+++++||+|+.+.
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 577888654211100111 1223333334443 568999999998876666655444443 6899999999999865
Q ss_pred HH----HHHHHHHHHHcC--CeEEEeeCccCCCch
Q 017100 163 AD----RNAWATYFAKQG--TKVIFSNGQLGMGTM 191 (377)
Q Consensus 163 ~~----~~~~~~~~~~~g--~~vi~iSa~~g~gi~ 191 (377)
.+ ...+.+.+...+ ..++++|+++|.|++
T Consensus 145 ~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 145 SELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 43 234445555544 479999999999873
No 255
>PRK12735 elongation factor Tu; Reviewed
Probab=97.99 E-value=7.7e-06 Score=81.92 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=42.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC------Ccee---------ccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~------~~~~---------v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
..++|+++|.+|+|||||+|+|++. .... .+...|+|.+...... +..+.++||||..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 4578999999999999999999851 1111 1125689998765554 3468999999973
No 256
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=2.2e-05 Score=70.41 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=77.5
Q ss_pred ccccCCcEEEEcCCCCCc-----CCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--------CCC
Q 017100 83 WADLDADLYYWTKSLRPV-----QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRK 149 (377)
Q Consensus 83 ~~~~~~d~vi~d~~L~~~-----qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--------~k~ 149 (377)
..+.++|+-+-...|... .|..+.++++...+..++..++-|++|.|..+..+..+ +..|+. ..+
T Consensus 42 ~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfen--i~~W~~~I~e~a~~~v~ 119 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFEN--IRNWIKNIDEHASDDVV 119 (207)
T ss_pred cceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHH--HHHHHHHHHhhCCCCCc
Confidence 334444444444343332 15565569999999999999999999999987666655 333442 568
Q ss_pred eEEEEEccCCCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhh
Q 017100 150 RILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 150 ~ilVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L 193 (377)
++||.||+|+..+.++ +.-.++..+.|..++++||+.|.++.+.
T Consensus 120 ~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 120 KILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred EEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 9999999999875432 2333445677999999999999998765
No 257
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.99 E-value=2.5e-05 Score=66.14 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~D 158 (377)
..++.+||. ||+ ..........++.+|+++.|+|+.++.+.. .+..++ ...|.++++||+|
T Consensus 48 ~~~~~l~D~--------~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D 116 (159)
T cd00154 48 TVKLQIWDT--------AGQ-ERFRSITPSYYRGAHGAILVYDITNRESFE--NLDKWLKELKEYAPENIPIILVGNKID 116 (159)
T ss_pred EEEEEEEec--------CCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 356667774 333 444455667789999999999998754322 222222 2479999999999
Q ss_pred CC-CHH-HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 159 MI-SMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 159 L~-~~~-~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
+. +.. ..+...++....+..++.+|++.+.|+.++.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 117 LEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 96 222 2233334444567889999999999998876654
No 258
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.98 E-value=9.1e-06 Score=71.14 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=64.8
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D 158 (377)
.+..+.+||.... .+........+..+|.+++|+|..++.+..+ ..+..++. +.|+++|.||+|
T Consensus 41 ~~~~i~l~Dt~G~---------~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 41 KNLKFTIWDVGGK---------HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQD 111 (169)
T ss_pred CCEEEEEEECCCC---------hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence 4566778886543 3334445567899999999999987643322 22333332 468999999999
Q ss_pred CCCH---HHHHHHHHHHHH-cC--CeEEEeeCccCCCchhhhhHHH
Q 017100 159 MISM---ADRNAWATYFAK-QG--TKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 159 L~~~---~~~~~~~~~~~~-~g--~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
+... ++...+...... .+ ..++.+||++|.|+.++.+.+.
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~ 157 (169)
T cd04158 112 VAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS 157 (169)
T ss_pred cccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHH
Confidence 9643 223333221110 01 2566789999999988766554
No 259
>PRK00007 elongation factor G; Reviewed
Probab=97.98 E-value=9.9e-06 Score=86.75 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=40.9
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCc-----eecc------------CCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~-----~~v~------------~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
.+|+++|.+|+|||||+|+|+.... -.+. ...|+|.+.....+ +..+.++||||+..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 4799999999999999999963111 0122 25688888543332 56799999999864
No 260
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.98 E-value=7.1e-06 Score=85.88 Aligned_cols=58 Identities=26% Similarity=0.399 Sum_probs=45.4
Q ss_pred CCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CC-ceEEEcCCccc
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGII 273 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~~~l~DTPG~i 273 (377)
.++++|+++|.+|+|||||+|+|.+.. +..+..+|+|.+.....+ +. .+.++||||.-
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 456789999999999999999999754 455667889988654333 33 79999999964
No 261
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.98 E-value=1.8e-05 Score=68.16 Aligned_cols=104 Identities=12% Similarity=-0.080 Sum_probs=65.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D 158 (377)
....+.+||.... ++........+..+|.+++|+|..++.+..+.. +..+. .+.|+++|.||+|
T Consensus 47 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (163)
T cd04136 47 QQCMLEILDTAGT---------EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCD 117 (163)
T ss_pred EEEEEEEEECCCc---------cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3455667886443 333333446688999999999988765433211 11111 2579999999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 159 L~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
+.+.... .....+.+..+.+++.+|+++|.|+.++.+.+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 118 LEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9753221 111122234457789999999999988766543
No 262
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.98 E-value=1.7e-05 Score=70.79 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---cCCCeEEEEEccCCCCH
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---GNRKRILVLNREDMISM 162 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l---~~k~~ilVlNK~DL~~~ 162 (377)
..+.+||...+ .+........+..+|++++|+|..++.+..+. .+..+. .+.|+++|.||+|+.+.
T Consensus 50 ~~l~i~D~~G~---------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 50 VTLGIWDTAGS---------ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred EEEEEEECCCc---------hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc
Confidence 45567876543 22233334567899999999998876443221 112111 25799999999998643
Q ss_pred HH------HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 163 AD------RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 163 ~~------~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.. .....++....+..++.+|+++|.|+.+|.+.+.+..
T Consensus 121 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred ccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 21 1122233344567789999999999999877766443
No 263
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.97 E-value=2.6e-05 Score=67.47 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------c-CCCeEEEEEccCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDM 159 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-------~-~k~~ilVlNK~DL 159 (377)
..+.+||... +.+........++.+|.+++|+|+.++.+..+ +.+++ . +.|+++|.||+|+
T Consensus 52 ~~~~l~D~~g---------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 52 IKAQIWDTAG---------QERYRAITSAYYRGAVGALLVYDITKKQTFEN--VERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEeCCC---------hHHHHHHHHHHHCCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 4567787533 24445555677899999999999987554322 23332 1 4789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
..... .+....+....+..++.+|+++|.|++++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred cccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 75321 1222333444567899999999999988766543
No 264
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.97 E-value=6.8e-06 Score=77.82 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.6
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
+|+++|.+|+|||||+|+|+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4799999999999999999753
No 265
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.97 E-value=1e-05 Score=72.07 Aligned_cols=55 Identities=29% Similarity=0.381 Sum_probs=36.2
Q ss_pred eeeEeecCCCCcchhhhhhhcCCcee-ccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|++.+..-.. ..+..|.+.....+.++. .+.++||||.-
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 69999999999999999999654211 122233333333444433 35689999963
No 266
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.96 E-value=4.1e-05 Score=66.53 Aligned_cols=106 Identities=11% Similarity=-0.074 Sum_probs=67.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H----HHHHh----cCCCeEEEEEc
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL----GNRKRILVLNR 156 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~----l~~~l----~~k~~ilVlNK 156 (377)
....+.+||..... +........+..+|.+++|+|..++.+..+. . +.+.. .+.|+++|.||
T Consensus 47 ~~~~l~i~Dt~G~~---------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (165)
T cd04140 47 NICTLQITDTTGSH---------QFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNK 117 (165)
T ss_pred EEEEEEEEECCCCC---------cchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEC
Confidence 34567788875542 2222223557889999999999876544321 1 21221 25799999999
Q ss_pred cCCCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 157 EDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 157 ~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+|+....+. ..-..+....+..++.+||++|.|++++.+.+.++
T Consensus 118 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 118 CDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 999753221 11122333445678899999999999887766544
No 267
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.96 E-value=2.8e-05 Score=69.36 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=69.1
Q ss_pred ccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-------hcCCCeEEEEE
Q 017100 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLN 155 (377)
Q Consensus 83 ~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-------l~~k~~ilVlN 155 (377)
+......+.+||+..+ ++........+..+|.+++|+|..++.+..+. +..| ..+.|+++|.|
T Consensus 48 ~~~~~~~l~iwDtaG~---------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~-~~~w~~~i~~~~~~~piilVgN 117 (182)
T cd04172 48 IDTQRIELSLWDTSGS---------PYYDNVRPLSYPDSDAVLICFDISRPETLDSV-LKKWKGEIQEFCPNTKMLLVGC 117 (182)
T ss_pred ECCEEEEEEEEECCCc---------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHHHCCCCCEEEEeE
Confidence 3444567888987654 33333334568999999999999877555432 1222 23679999999
Q ss_pred ccCCCCH--------------HHHHHHHHHHHHcCC-eEEEeeCccCCC-chhhhhHH
Q 017100 156 REDMISM--------------ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLA 197 (377)
Q Consensus 156 K~DL~~~--------------~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~l 197 (377)
|+||.+. -..++..++.++.+. .++.+||++|.| ++++...+
T Consensus 118 K~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~ 175 (182)
T cd04172 118 KSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175 (182)
T ss_pred ChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHH
Confidence 9998531 011223344456674 789999999998 88775543
No 268
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.96 E-value=1.5e-05 Score=74.25 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=36.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCcee-----cc------------CCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCP-----AA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~-----v~------------~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
+|+++|.+|+|||||+|+|+...... +. ..-|+|.+.....+ +..+.++||||...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence 37999999999999999998532211 11 11233433332222 44789999999963
No 269
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.95 E-value=1.2e-05 Score=70.21 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=35.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|++.+..- ......++.+. ..+.++. .+.++||||--
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 3689999999999999999986542 22222233222 1233333 25689999974
No 270
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.95 E-value=2.6e-05 Score=67.08 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc----CCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l~----~k~~ilVlNK~DL~~ 161 (377)
..+.+||...+ .+........+..+|++++|+|..++.+..+. .+..+.. +.|++++.||+|+..
T Consensus 49 ~~l~~~D~~G~---------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 49 VRLQLWDTAGQ---------ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred EEEEEEECCCc---------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 45677875432 44555566779999999999999876543221 1222211 378999999999954
Q ss_pred HHH-H-HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 162 MAD-R-NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 162 ~~~-~-~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
... . ..........+..++.+|++++.|++++.+.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 120 KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 321 1 2222333455688899999999999988776643
No 271
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.95 E-value=2.9e-05 Score=66.65 Aligned_cols=105 Identities=14% Similarity=-0.018 Sum_probs=68.8
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (377)
.+..+.+||.... ..........+..+|.++.++|..++.+..+ ..+..+. .+.|+++|+||+|
T Consensus 46 ~~~~~~i~D~~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 116 (164)
T cd04139 46 EDVQLNILDTAGQ---------EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCD 116 (164)
T ss_pred EEEEEEEEECCCh---------hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccc
Confidence 3455777775332 3344444567899999999999877643221 1122222 3689999999999
Q ss_pred CCCH--HHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISM--ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~--~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.+. .............+.+++.+|+++|.|+.++.+.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 117 LEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred cccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9762 1223333344455688999999999999998766543
No 272
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.95 E-value=4.6e-05 Score=67.80 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=65.5
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D 158 (377)
.+..+.+||...+ .+........++.+|++++|+|+.++.+..+ ..+.+.+. +.|+++|.||.|
T Consensus 59 ~~~~~~l~D~~G~---------~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 129 (182)
T PTZ00133 59 KNLKFTMWDVGGQ---------DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQD 129 (182)
T ss_pred CCEEEEEEECCCC---------HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCC
Confidence 4566778886543 4445555677999999999999876543221 22333332 478999999999
Q ss_pred CCCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.......+..+.+. .....++.+|+++|.|++++.+.+.+
T Consensus 130 l~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 130 LPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSA 175 (182)
T ss_pred CCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHH
Confidence 864322122222221 11123456899999999988766543
No 273
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.95 E-value=4.9e-05 Score=65.61 Aligned_cols=104 Identities=9% Similarity=-0.117 Sum_probs=66.5
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~D 158 (377)
....+.+||.... ++........+..+|.++.|+|+.++.+..+. .+.+.. .+.|+++|.||+|
T Consensus 46 ~~~~l~i~Dt~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~D 116 (164)
T smart00173 46 EVCLLDILDTAGQ---------EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCD 116 (164)
T ss_pred EEEEEEEEECCCc---------ccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3456677886443 33334444668899999999999876443221 111111 1579999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
+.+... ......+.+..+..++.+|+++|.|++++.+.+.
T Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 117 LESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 975321 1122223344567889999999999998866554
No 274
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.95 E-value=1.4e-05 Score=69.53 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=35.9
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCce---eEEEEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT---RVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT---~~~~~~~~~~---~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|++.+.. .....+.|+ .....+.++. .+.+.||||-.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 579999999999999999998653 222333322 2222334433 46789999963
No 275
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.95 E-value=4.7e-05 Score=69.27 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C-CCeEEEEEccCCCCH--HH----HHHHHHHHHH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISM--AD----RNAWATYFAK 174 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~-k~~ilVlNK~DL~~~--~~----~~~~~~~~~~ 174 (377)
||| ..+...+...+..+|++++|+|+..+..........++. + +++++|+||+|+... .. .....+.+..
T Consensus 85 pG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~ 163 (208)
T cd04166 85 PGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAK 163 (208)
T ss_pred CcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHH
Confidence 665 445555667789999999999998765433333223222 3 346778999999742 11 1122233334
Q ss_pred cC---CeEEEeeCccCCCchhh
Q 017100 175 QG---TKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 175 ~g---~~vi~iSa~~g~gi~~L 193 (377)
.+ ..++++|+++|.|+.+.
T Consensus 164 ~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 164 LGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cCCCCceEEEEeCCCCCCCccC
Confidence 44 34889999999998643
No 276
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.95 E-value=3.2e-05 Score=67.44 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~D 158 (377)
...+.+||...+ .+........++.+|.+++|+|+.++.+..+ +..++ .+.|+++|.||+|
T Consensus 52 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pvivv~nK~D 120 (168)
T cd01866 52 QIKLQIWDTAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNH--LTSWLEDARQHSNSNMTIMLIGNKCD 120 (168)
T ss_pred EEEEEEEECCCc---------HHHHHHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 345678885332 4444555677899999999999987554332 33332 2568999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
+..... ......+..+.+..++++|++.+.|+.++...+.
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 121 LESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 974321 1222334456678899999999999988765443
No 277
>PRK04213 GTP-binding protein; Provisional
Probab=97.95 E-value=0.00016 Score=64.95 Aligned_cols=110 Identities=14% Similarity=0.020 Sum_probs=64.9
Q ss_pred cEEEEcCCCCC--cCCCchHHHHHHHHHHHH----hhhcCeEEEEEecCCCCCC-----------CcHHHHHHh--cCCC
Q 017100 89 DLYYWTKSLRP--VQWYPGHIAKTEKELKDQ----LKLMDVVIEVRDARIPLST-----------THPLMDQWL--GNRK 149 (377)
Q Consensus 89 d~vi~d~~L~~--~qw~PGh~~~~~k~l~~~----i~~aDlIL~V~Dar~p~~~-----------~~~~l~~~l--~~k~ 149 (377)
++.+||...-. ..+-+..+++....+... ++.+|+++.|+|+...... .+.++...+ .+.|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 57888875421 112222345555444433 4567899999998653211 012223332 3789
Q ss_pred eEEEEEccCCCCHH--HHHHHHHHHHHc------CCeEEEeeCccCCCchhhhhHHHH
Q 017100 150 RILVLNREDMISMA--DRNAWATYFAKQ------GTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 150 ~ilVlNK~DL~~~~--~~~~~~~~~~~~------g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+++|+||+|+.+.. ....+.+.+.-. +..++.+||++| |++++.+.+.+
T Consensus 133 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~ 189 (201)
T PRK04213 133 PIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRK 189 (201)
T ss_pred eEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHH
Confidence 99999999997654 223333322210 125789999999 99988776654
No 278
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.94 E-value=6.8e-05 Score=78.92 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCC-
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMAD---RNAWATYFAKQGT- 177 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~~---~~~~~~~~~~~g~- 177 (377)
||| ..+...+...+..+|.+|+|+|+..+....... +..+. .+.|+++|+||+|+..... ...+.+. .+.
T Consensus 82 PGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~---lg~~ 157 (600)
T PRK05433 82 PGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDV---IGID 157 (600)
T ss_pred CCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHH---hCCC
Confidence 666 456667778899999999999998765433222 22222 3789999999999964321 1222222 232
Q ss_pred --eEEEeeCccCCCchhhhhHHHHhh
Q 017100 178 --KVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 178 --~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.++++|+++|.|+.+|.+.+.+..
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhC
Confidence 489999999999999888775544
No 279
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.94 E-value=1e-05 Score=70.82 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=35.3
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-CCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|+|.+.. ... +..|..... +.. +-.+.++||||..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQ--PIPTIGFNVETVEYKNLKFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCC--cCCcCceeEEEEEECCEEEEEEECCCCh
Confidence 47899999999999999998653 222 334444322 222 3357899999974
No 280
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.94 E-value=3.4e-05 Score=65.98 Aligned_cols=102 Identities=20% Similarity=0.116 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~-~k~~ilVlNK~DL~~ 161 (377)
..+.+||...+ ..........+..+|.+++|+|..++.+.... ++..... +.|+++|+||+|+..
T Consensus 49 ~~~~~~D~~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 49 IDLAIWDTAGQ---------ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred EEEEEEECCch---------HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 45677885332 23333344567899999999998776432221 1122222 578999999999975
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 162 ~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
... .....++....+..++++|++++.|+.++.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 120 QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 332 2333344555678889999999999988877654
No 281
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.94 E-value=1.7e-05 Score=85.01 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=40.5
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCce-----eccC------------CCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMC-----PAAP------------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~-----~v~~------------~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
.+|+++|.+|+|||||+|+|+..... .+.+ ..|+|.+.....+ +..+.++||||...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 47999999999999999999742211 1111 3578877543332 55789999999974
No 282
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.94 E-value=1.8e-05 Score=68.44 Aligned_cols=104 Identities=11% Similarity=-0.065 Sum_probs=66.4
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D 158 (377)
....+.+||.... .+........+..+|.+++|+|..++.+..+.. +..+. .+.|+++|.||+|
T Consensus 47 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (164)
T cd04175 47 QQCMLEILDTAGT---------EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 117 (164)
T ss_pred EEEEEEEEECCCc---------ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 3455667886443 334444456789999999999987654432211 12221 2579999999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 159 L~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
+...... .....+.++.+..++.+||++|.|++++...+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 118 LEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred chhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9653211 111122344567899999999999988766543
No 283
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.93 E-value=1.4e-05 Score=72.02 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=36.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|++.+.. ......|..+.+ ...+.++. .+.|+||||--
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 4789999999999999999998653 221112222222 22333332 46799999963
No 284
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.93 E-value=1.3e-05 Score=69.45 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=34.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCC--CceeEEEEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|++....- .....+ +.+.......++. .+.+.||||.-
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 3689999999999999999986432 111111 2222112222332 36789999974
No 285
>PLN03110 Rab GTPase; Provisional
Probab=97.93 E-value=6.7e-05 Score=68.70 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=68.3
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE 157 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~ 157 (377)
..+.+.+||...+ .+........++.+|.+++|+|..++.+..+ +..|+ .+.|+++|.||+
T Consensus 59 ~~~~l~l~Dt~G~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~piiiv~nK~ 127 (216)
T PLN03110 59 KTVKAQIWDTAGQ---------ERYRAITSAYYRGAVGALLVYDITKRQTFDN--VQRWLRELRDHADSNIVIMMAGNKS 127 (216)
T ss_pred EEEEEEEEECCCc---------HHHHHHHHHHhCCCCEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCeEEEEEECh
Confidence 3456777875332 4555555677899999999999987655432 33332 257899999999
Q ss_pred CCCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 158 DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
||...... +....+....+..++.+|+++|.|++++.+.+.
T Consensus 128 Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 128 DLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred hcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 98643221 111122234568899999999999988866553
No 286
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.93 E-value=4.5e-05 Score=68.32 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=68.7
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEcc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNRE 157 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~----~l~~k~~ilVlNK~ 157 (377)
......+.+||...+ ++........+..+|+++.|+|..++.+..+.. +.. ...+.|+++|.||.
T Consensus 47 ~~~~~~l~i~Dt~G~---------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~ 117 (191)
T cd01875 47 DGRTVSLNLWDTAGQ---------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKK 117 (191)
T ss_pred CCEEEEEEEEECCCc---------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeCh
Confidence 334466778887544 444444446689999999999998876544321 111 11367999999999
Q ss_pred CCCCHHH--------------HHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHHHH
Q 017100 158 DMISMAD--------------RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 158 DL~~~~~--------------~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
||..... .+.-.++.++.+ ..++.+||++|.|++++.+.+.+
T Consensus 118 DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 118 DLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred hhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 9964321 011112233445 47889999999999887665543
No 287
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.93 E-value=1.2e-05 Score=69.38 Aligned_cols=55 Identities=25% Similarity=0.295 Sum_probs=34.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCce-eEE--EEEEeC----CceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVL--KWVRFG----KDLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT-~~~--~~~~~~----~~~~l~DTPG~ 272 (377)
++|+++|.+|||||||+|+|.........+...++ -+. ....+. -.+.++||||.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH
Confidence 36899999999999999999853222223332222 121 122221 24789999996
No 288
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.93 E-value=5.7e-05 Score=76.03 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCC--CcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC---c-H----HHHHH---hcCCCeEEE
Q 017100 87 DADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT---H-P----LMDQW---LGNRKRILV 153 (377)
Q Consensus 87 ~~d~vi~d~~L~--~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~---~-~----~l~~~---l~~k~~ilV 153 (377)
+..+++||...- ..+|.- .+.....+.++++|++++|+|+.+..... + . ++..+ +.++|.++|
T Consensus 205 ~~~~~laD~PGliega~~~~----gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV 280 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGV----GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVV 280 (424)
T ss_pred CceEEEEECCCCcccccccc----hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEE
Confidence 456788886532 112111 22334456689999999999986532111 1 1 12221 126899999
Q ss_pred EEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 154 LNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 154 lNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+||+||.... ..+..+.+..+..++++|++++.|+++|.+.+.++.
T Consensus 281 ~NK~DL~~~~--e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 281 ANKMDLPEAE--ENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred EeCCCCcCCH--HHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999985332 222233333446789999999999999887776554
No 289
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.92 E-value=3.7e-05 Score=68.69 Aligned_cols=103 Identities=10% Similarity=-0.035 Sum_probs=65.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHH---h----cCCCeEEEEEccC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQW---L----GNRKRILVLNRED 158 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~---l----~~k~~ilVlNK~D 158 (377)
..+.+||.... .+........+..+|++++|+|..++.+..+. . +..+ . .+.|+++|.||+|
T Consensus 47 ~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~D 117 (190)
T cd04144 47 CMLEVLDTAGQ---------EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCD 117 (190)
T ss_pred EEEEEEECCCc---------hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChh
Confidence 45677886443 33444444678999999999998775543321 1 1111 1 2468999999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+...... ..-.++....+..++.+||++|.|++++.+.+.+
T Consensus 118 l~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 118 KVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred ccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9643221 1112233445678899999999999988665543
No 290
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.92 E-value=7.8e-06 Score=71.75 Aligned_cols=85 Identities=19% Similarity=0.144 Sum_probs=54.9
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH-HHHHHh---cCCCeEEEEEccCCCCHHHH--HHHHHHHHHcCC-eEEEeeCccC
Q 017100 115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLG 187 (377)
Q Consensus 115 ~~~i~~aDlIL~V~Dar~p~~~~~~-~l~~~l---~~k~~ilVlNK~DL~~~~~~--~~~~~~~~~~g~-~vi~iSa~~g 187 (377)
...++.+|++++|+|+.++.+..+. ++...+ .+.|+++|.||+|+.+.... ....++.+..+. .++.+|+++|
T Consensus 72 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 3557999999999999776432221 122222 25799999999999654321 111222234443 4688999999
Q ss_pred CCchhhhhHHHH
Q 017100 188 MGTMKLSRLAKA 199 (377)
Q Consensus 188 ~gi~~L~~~l~~ 199 (377)
.|++++.+.+.+
T Consensus 152 ~~v~~lf~~l~~ 163 (169)
T cd01892 152 DSSNELFTKLAT 163 (169)
T ss_pred ccHHHHHHHHHH
Confidence 999887666544
No 291
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.91 E-value=5.4e-05 Score=69.48 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----CCc---HHHHHH---hcCCCeEEEEEccCCCC----HHHHH---
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----TTH---PLMDQW---LGNRKRILVLNREDMIS----MADRN--- 166 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~----~~~---~~l~~~---l~~k~~ilVlNK~DL~~----~~~~~--- 166 (377)
||| ..+...+...+..+|++++|+|+.++.. ... .....+ ...+|+++++||+|+.. +....
T Consensus 85 pG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~ 163 (219)
T cd01883 85 PGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIK 163 (219)
T ss_pred CCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHH
Confidence 666 4455666677888999999999987521 111 111111 22467888999999983 22222
Q ss_pred -HHHHHHHHcC-----CeEEEeeCccCCCch
Q 017100 167 -AWATYFAKQG-----TKVIFSNGQLGMGTM 191 (377)
Q Consensus 167 -~~~~~~~~~g-----~~vi~iSa~~g~gi~ 191 (377)
.....+...+ ..++++||++|.|+.
T Consensus 164 ~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 164 KELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2222344443 458999999999975
No 292
>PTZ00369 Ras-like protein; Provisional
Probab=97.91 E-value=5.4e-05 Score=67.58 Aligned_cols=102 Identities=10% Similarity=-0.083 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL 159 (377)
...+.+||.... ..........+..+|+++.|+|..++.+..+.. +.+.. .+.|+++|.||+|+
T Consensus 52 ~~~l~i~Dt~G~---------~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 122 (189)
T PTZ00369 52 TCLLDILDTAGQ---------EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDL 122 (189)
T ss_pred EEEEEEEeCCCC---------ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 345667876543 333344446788999999999998765432211 11111 15689999999998
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.+... ......+....+.+++.+|+++|.|+.++.+.+
T Consensus 123 ~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 123 DSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred ccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 64321 112223334456788999999999998875544
No 293
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.91 E-value=1.5e-05 Score=68.77 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=34.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.+|+++|.||||||||+|++....- . .....|+.+. ..+.++. .+.+.||||.-
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF-I-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 4799999999999999999986432 1 2222232222 2233332 36789999963
No 294
>PLN03118 Rab family protein; Provisional
Probab=97.91 E-value=5.4e-05 Score=68.86 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh------cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l------~~k~~ilVlNK~D 158 (377)
...+.+||.... ++........++.+|.+++|+|..++.+..+.. +...+ .+.|.++|.||+|
T Consensus 61 ~~~l~l~Dt~G~---------~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 131 (211)
T PLN03118 61 RLKLTIWDTAGQ---------ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVD 131 (211)
T ss_pred EEEEEEEECCCc---------hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 345677876443 444444557789999999999998765433321 11111 2458899999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+..... ......+....+..++.+|++++.|++++.+.+..
T Consensus 132 l~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 174 (211)
T PLN03118 132 RESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELAL 174 (211)
T ss_pred ccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 975432 12222334456677889999999999988766543
No 295
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.91 E-value=1.5e-05 Score=73.16 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMIS 161 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~~ 161 (377)
...+.+||...+ ++........+..+|.+|.|+|..++.+..+.. +.+...+.|+++|.||+|+..
T Consensus 61 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 61 KIRFYCWDTAGQ---------EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred EEEEEEEECCCc---------hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 456677776543 333333345688999999999998765443211 111223679999999999964
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 162 ~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
......-..+.+..+..++.+||++|.|+.++.+.+
T Consensus 132 ~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred ccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 322111113344556788999999999998876544
No 296
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.91 E-value=1.1e-05 Score=77.12 Aligned_cols=58 Identities=24% Similarity=0.407 Sum_probs=34.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceecc-CCC------CceeEEE--EEEe-----CCceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRP------GVTRVLK--WVRF-----GKDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~-~~p------gtT~~~~--~~~~-----~~~~~l~DTPG~i~ 274 (377)
.++|++||-+|+|||||||+|.+....... ..+ ..|..+. ...+ .-++.++|||||-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 468999999999999999999976533332 111 1122222 2222 12477999999953
No 297
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.90 E-value=1.4e-05 Score=69.58 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=35.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCcc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~ 272 (377)
.++|+++|.+|||||||+|++.+.. ......+..+.+. ..+.++. .+.+.||||-
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh
Confidence 4789999999999999999998643 2222223222222 2223332 3568899995
No 298
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.90 E-value=1.8e-05 Score=69.13 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=35.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.+|+++|.+|||||||+|++.... ......+..+.+. ..+.++. .+.++||||.-
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 579999999999999999998643 2222223222222 2233332 47899999964
No 299
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.90 E-value=1.4e-05 Score=69.43 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=36.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..+|+++|.+|||||||+|+|.+.. ......+.++.+.. .+.+.+ .+.+.||||.-
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3689999999999999999998543 22222333333332 233332 35778999963
No 300
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.90 E-value=2.1e-05 Score=70.07 Aligned_cols=103 Identities=12% Similarity=0.018 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... .+........++.+|.+++|+|+.++.+... ..+.+++ .+.|+++|+||+|+
T Consensus 60 ~~~~~~~D~~G~---------~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 60 NIKFTTFDLGGH---------QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred CEEEEEEECCCC---------HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 455677776443 3344445577899999999999987643222 2343333 36799999999998
Q ss_pred C---CHHHHHHHHHHHHH---------cCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 I---SMADRNAWATYFAK---------QGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~---~~~~~~~~~~~~~~---------~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
. +.++.......... ....++.+|+++|.|++++.+.+.
T Consensus 131 ~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 131 PYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred cCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence 5 33343333221110 123588899999999988876653
No 301
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.89 E-value=3.9e-05 Score=67.77 Aligned_cols=104 Identities=11% Similarity=-0.052 Sum_probs=65.7
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccC
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNRED 158 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l----~~k~~ilVlNK~D 158 (377)
.....+.+||...+ ++........+..+|++++|+|..++.+..+.. +...+ .+.|+++|.||+|
T Consensus 46 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (175)
T cd01874 46 GEPYTLGLFDTAGQ---------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 116 (175)
T ss_pred CEEEEEEEEECCCc---------cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHh
Confidence 34466778887654 222222234688999999999998876544321 21112 2679999999999
Q ss_pred CCCHHHH-------------HHHHH-HHHHcC-CeEEEeeCccCCCchhhhhHH
Q 017100 159 MISMADR-------------NAWAT-YFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 159 L~~~~~~-------------~~~~~-~~~~~g-~~vi~iSa~~g~gi~~L~~~l 197 (377)
+.+..+. .+... +.++.+ ..++.+||++|.|++++.+.+
T Consensus 117 l~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 117 LRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence 8653221 01111 222344 578999999999998876544
No 302
>PRK11058 GTPase HflX; Provisional
Probab=97.89 E-value=0.00011 Score=74.11 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=66.6
Q ss_pred cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH---h--cCCCeEEEEEccCCCCH
Q 017100 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW---L--GNRKRILVLNREDMISM 162 (377)
Q Consensus 89 d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~---l--~~k~~ilVlNK~DL~~~ 162 (377)
.+++||+...- .-.|...........+.+..+|++|+|+|+.++....+.. +..+ + .++|+++|+||+|+.+.
T Consensus 246 ~~~l~DTaG~~-r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 246 ETVLADTVGFI-RHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred eEEEEecCccc-ccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 45666765431 1112222233344456689999999999998876544321 1222 2 26899999999999754
Q ss_pred HHHHHHHHHHHHcCCe-EEEeeCccCCCchhhhhHHHHh
Q 017100 163 ADRNAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 163 ~~~~~~~~~~~~~g~~-vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.... ... ...+.. ++++|+++|.|++.|.+.+.+.
T Consensus 325 ~~~~--~~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 325 FEPR--IDR-DEENKPIRVWLSAQTGAGIPLLFQALTER 360 (426)
T ss_pred hhHH--HHH-HhcCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 2211 111 123433 5789999999999998877654
No 303
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.89 E-value=2.6e-05 Score=69.23 Aligned_cols=106 Identities=11% Similarity=-0.005 Sum_probs=69.0
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H-HHHH---hcCCCeEEEEEcc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L-MDQW---LGNRKRILVLNRE 157 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~-l~~~---l~~k~~ilVlNK~ 157 (377)
......+.+||...+ ++........+..+|.+|+|+|..++.+..+. . +..+ ..+.|+++|.||+
T Consensus 45 ~~~~v~l~i~Dt~G~---------~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~ 115 (176)
T cd04133 45 DGNTVNLGLWDTAGQ---------EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKL 115 (176)
T ss_pred CCEEEEEEEEECCCC---------ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCh
Confidence 344577889987655 22333334578999999999999887765542 1 1111 1357899999999
Q ss_pred CCCCHH------------HHHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHH
Q 017100 158 DMISMA------------DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 158 DL~~~~------------~~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~ 198 (377)
||.+.. ..++-..+.++.+. .++.+||++|.|++++.+.+.
T Consensus 116 Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~ 169 (176)
T cd04133 116 DLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAI 169 (176)
T ss_pred hhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHH
Confidence 995431 11122223344565 588999999999988755544
No 304
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.89 E-value=1.3e-05 Score=71.58 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=34.3
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|+|.... .....+.|+.+. ....++. .+.++||||.-
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 48999999999999999998543 223333333221 1222332 36789999963
No 305
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.89 E-value=0.0001 Score=74.12 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH---HHHhcCCCeEEEEEccCCCCHHH--H----HHHHHHHHH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM---DQWLGNRKRILVLNREDMISMAD--R----NAWATYFAK 174 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l---~~~l~~k~~ilVlNK~DL~~~~~--~----~~~~~~~~~ 174 (377)
||| +++.+.+...+..+|++++|+|+..+......+. ...+..+++++++||+|+.+... . .....++++
T Consensus 88 PGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~ 166 (406)
T TIGR02034 88 PGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQ 166 (406)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHH
Confidence 787 5566667777899999999999988765544332 23334456788999999985321 1 222223333
Q ss_pred cC---CeEEEeeCccCCCchh
Q 017100 175 QG---TKVIFSNGQLGMGTMK 192 (377)
Q Consensus 175 ~g---~~vi~iSa~~g~gi~~ 192 (377)
.+ ..++++|+.+|.|+..
T Consensus 167 ~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 167 LGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cCCCCccEEEeecccCCCCcc
Confidence 34 3589999999999875
No 306
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.88 E-value=3.5e-05 Score=67.26 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=65.4
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~------l~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||...+. .........++.+|++++|+|..++.+..+.. +.....+.|+++|.||+|+
T Consensus 44 ~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 44 KPVELGLWDTAGQE---------DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred EEEEEEEEECCCCc---------ccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhh
Confidence 34567888865541 22222234578999999999998765443221 1111237899999999999
Q ss_pred CCHHH-H-------------HHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMAD-R-------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~-~-------------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.+... . +.-.++.+..+. .++.+|+++|.|++++.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~ 168 (174)
T smart00174 115 REDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAI 168 (174)
T ss_pred hhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHH
Confidence 75321 0 111123344554 788999999999988766543
No 307
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.88 E-value=4.2e-05 Score=65.88 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHH--h--cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQW--L--GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~--l--~~k~~ilVlNK~DL~ 160 (377)
...+.+||.. || .+........+..+|.++.|+|..++.+..+. . +... . .+.|+++|.||+|+.
T Consensus 48 ~~~l~l~D~~--------G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 48 RVKLQIWDTA--------GQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEEEEECc--------ch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 3556778853 33 44445555678999999999999876544331 1 1111 1 267899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.... ......+.+..+..++.+|++++.|+.++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 119 DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 5432 223334455667889999999999998876543
No 308
>PLN03108 Rab family protein; Provisional
Probab=97.88 E-value=0.00011 Score=66.90 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~ 161 (377)
..+.+||.... ..........+..+|.++.|+|..++.+..+. .+.... ...|+++|.||+||..
T Consensus 55 i~l~l~Dt~G~---------~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 55 IKLQIWDTAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred EEEEEEeCCCc---------HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 45667876433 33444445678899999999999876544331 111111 2578999999999965
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhh-hHHHHh
Q 017100 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLS-RLAKAL 200 (377)
Q Consensus 162 ~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~-~~l~~l 200 (377)
... ...-.++.++.+..++.+|++++.|++++. .+++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 321 122223345567888999999999998854 344444
No 309
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.88 E-value=3.8e-05 Score=69.31 Aligned_cols=103 Identities=15% Similarity=0.017 Sum_probs=67.5
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEcc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNRE 157 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~----~l~~k~~ilVlNK~ 157 (377)
......+.+||+..+. ... ....+..+|++++|+|..++.+..+.. +.. ...+.|+++|.||+
T Consensus 62 ~~~~v~l~iwDTaG~~--------~~~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~ 130 (195)
T cd01873 62 DGVSVSLRLWDTFGDH--------DKD---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKL 130 (195)
T ss_pred CCEEEEEEEEeCCCCh--------hhh---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEch
Confidence 4455778889876551 111 123689999999999998776554321 111 12357899999999
Q ss_pred CCCCH-------------------H--HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 158 DMISM-------------------A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 158 DL~~~-------------------~--~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
||... . ..++..++.++.|..++.+||++|.|++++.+.+
T Consensus 131 DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 131 DLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred hccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHH
Confidence 98631 0 1122333445667889999999999998875543
No 310
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.88 E-value=1.2e-05 Score=84.40 Aligned_cols=54 Identities=28% Similarity=0.416 Sum_probs=40.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC--ceeccCCCCceeEEEEEEe---CCceEEEcCCcc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~--~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~ 272 (377)
.|+++|.+|+|||||+|+|++.. .......+|+|.+.....+ +..+.++||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 58999999999999999999743 2223346789988754333 346789999995
No 311
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.88 E-value=1.2e-05 Score=86.50 Aligned_cols=58 Identities=31% Similarity=0.507 Sum_probs=46.0
Q ss_pred CCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
.+++.|+++|.+|+|||||+|+|++.. +..+..+|+|.+...+.+ +..+.++||||.-
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 467789999999999999999998644 455667888888654443 4568999999974
No 312
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.87 E-value=4.1e-05 Score=65.85 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL 159 (377)
...+.+||.... .+........++.+|.++.|+|..++.+..... +.++. .+.|+++|.||+|+
T Consensus 48 ~~~~~l~D~~g~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~ 118 (161)
T cd01863 48 KVKLAIWDTAGQ---------ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDK 118 (161)
T ss_pred EEEEEEEECCCc---------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcc
Confidence 356778885442 344444456788999999999987665432211 11121 25789999999999
Q ss_pred CCHH-HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~-~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.... ......++....+..++++|+++|.|+.++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 119 ENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 7332 1222233444557789999999999998876654
No 313
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.86 E-value=4.9e-05 Score=67.47 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=67.2
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-------hcCCCeEEEEEc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNR 156 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-------l~~k~~ilVlNK 156 (377)
.....++.+||...+ ++........+..+|++++|+|..++.+..+. +..| ..+.|+++|.||
T Consensus 45 ~~~~~~l~iwDt~G~---------~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~-~~~w~~~i~~~~~~~~iilVgnK 114 (178)
T cd04131 45 DEQRIELSLWDTSGS---------PYYDNVRPLCYPDSDAVLICFDISRPETLDSV-LKKWRGEIQEFCPNTKVLLVGCK 114 (178)
T ss_pred CCEEEEEEEEECCCc---------hhhhhcchhhcCCCCEEEEEEECCChhhHHHH-HHHHHHHHHHHCCCCCEEEEEEC
Confidence 344567888887654 33333333568999999999999877665431 1222 236789999999
Q ss_pred cCCCCH--------------HHHHHHHHHHHHcCC-eEEEeeCccCCC-chhhhhHH
Q 017100 157 EDMISM--------------ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLA 197 (377)
Q Consensus 157 ~DL~~~--------------~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~l 197 (377)
+||.+. -..++..++-++.+. .++.+||++|.+ ++++...+
T Consensus 115 ~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 115 TDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred hhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHH
Confidence 998531 011222333445664 788999999984 88765544
No 314
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.86 E-value=3.9e-05 Score=66.58 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~D 158 (377)
...+.+||...+ .+........+..+|.++.|+|..++.+..+ +..++ .+.|+++|.||.|
T Consensus 48 ~~~l~i~D~~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~--~~~~~~~~~~~~~~~~~iilvgnK~D 116 (161)
T cd04117 48 KVRIQIWDTAGQ---------ERYQTITKQYYRRAQGIFLVYDISSERSYQH--IMKWVSDVDEYAPEGVQKILIGNKAD 116 (161)
T ss_pred EEEEEEEeCCCc---------HhHHhhHHHHhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 356678886443 3344445567899999999999887644322 22221 1468999999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 159 L~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
|...... +.-..+.+..+..++.+|+++|.|++++.+.+.
T Consensus 117 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 117 EEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9654321 122222334567789999999999888765543
No 315
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.85 E-value=2.2e-05 Score=68.59 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=33.9
Q ss_pred eeeEeecCCCCcchhhhhhhcCCc-eeccCCCCceeEEEEEEeC---CceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|++....- ....+..+.......+... -.+.+.||||.-
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999984331 1112222222221112222 246799999974
No 316
>PRK12739 elongation factor G; Reviewed
Probab=97.85 E-value=2.5e-05 Score=83.62 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=41.3
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCc-----eecc------------CCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~-----~~v~------------~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
..+|+++|.+|+|||||+|+|+.... ..+. ...|+|.+.....+ +..+.++||||+..
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 35799999999999999999974211 1122 25688887543333 55789999999864
No 317
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.85 E-value=6.4e-05 Score=65.16 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=64.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~~ 161 (377)
..+.+||.. |+ .+........+..+|+++.|+|+.++.+.... . +..+. .+.|+++|.||+|+..
T Consensus 52 ~~l~i~D~~--------G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 52 VKLQIWDTA--------GQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred EEEEEEECC--------Ch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 466777753 33 44555556678999999999999876543221 1 11111 1568999999999975
Q ss_pred HHH--HHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHH
Q 017100 162 MAD--RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 162 ~~~--~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l 197 (377)
..+ ........+..+ ..++.+|+++|.|++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 123 QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 432 112222333444 467899999999988876554
No 318
>PLN03127 Elongation factor Tu; Provisional
Probab=97.85 E-value=1.9e-05 Score=80.15 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=43.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC------Cce---------eccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~------~~~---------~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
..++|+++|.+|+|||||+|+|++. ... ..+..+|+|.+.....+ +..+.++||||..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 4578999999999999999999732 111 11224799999765555 3468999999984
No 319
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.84 E-value=5.9e-06 Score=71.82 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=53.8
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHH-Hh-cCCCeEEEEEccCCCCHHHHHH-HHHHHHHcCCeEEEeeCccCCCchhhhh
Q 017100 119 KLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (377)
Q Consensus 119 ~~aDlIL~V~Dar~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (377)
++.|+|+.|+|++.. .++..+.. ++ .++|.++++||+|++.+....- ....-+..|.+++++||+++.|+++|++
T Consensus 77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence 789999999999863 33333322 22 3899999999999886643211 1122234588999999999999998876
Q ss_pred HH
Q 017100 196 LA 197 (377)
Q Consensus 196 ~l 197 (377)
.+
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 53
No 320
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.84 E-value=2.1e-05 Score=68.25 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=35.2
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
++|+++|.+|||||||++++....- ....|.+..+...+.. .-.+.+.||||.-
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~--~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccCCCCCcceEEEEECCEEEEEEECCCCH
Confidence 3699999999999999999964332 2233322222222333 2357899999973
No 321
>PLN03110 Rab GTPase; Provisional
Probab=97.83 E-value=2.6e-05 Score=71.45 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=38.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+++|.+.. ......|....+ ...+.++. .+.|+||||-.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~-~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNE-FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4789999999999999999998654 222333333323 23344443 56789999964
No 322
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.83 E-value=2.3e-05 Score=69.75 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=35.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
..+|+++|.+|||||||++++....... ..|.+..+...+.. +-.+.++||||.-
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT--TIPTIGFNVETVEYKNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--cCCccccceEEEEECCEEEEEEECCCCH
Confidence 4689999999999999999996433222 22322122222222 2357899999973
No 323
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.83 E-value=0.00012 Score=66.09 Aligned_cols=110 Identities=15% Similarity=-0.022 Sum_probs=65.3
Q ss_pred cCCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h----cCCCeEEEEE
Q 017100 86 LDADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L----GNRKRILVLN 155 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh-~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~---l----~~k~~ilVlN 155 (377)
....+.+||..... =|++. -..........++.+|++++|+|+.++.+..... +..+ . .+.|+++|.|
T Consensus 47 ~~~~l~i~Dt~G~~--~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgN 124 (198)
T cd04142 47 RVYDLHILDVPNMQ--RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124 (198)
T ss_pred EEEEEEEEeCCCcc--cCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 34567789876531 11111 1111222335578999999999998765443221 1111 1 3579999999
Q ss_pred ccCCCCHHHH--HHHHHHHH-HcCCeEEEeeCccCCCchhhhhHH
Q 017100 156 REDMISMADR--NAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 156 K~DL~~~~~~--~~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
|+|+...+.. .....+.. ..+..++++|+++|.|+++|.+.+
T Consensus 125 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i 169 (198)
T cd04142 125 KRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKEL 169 (198)
T ss_pred CccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHH
Confidence 9999653211 11112222 235788999999999998875544
No 324
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.82 E-value=6.4e-05 Score=65.21 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=65.1
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H----HHHHhc-CCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG-NRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~----l~~~l~-~k~~ilVlNK~DL~~ 161 (377)
..+.+||. ||+ ..........+..+|+++.|+|..++.+.... . +..+.. +.|.++|.||+|+.+
T Consensus 56 ~~~~~~D~--------~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 56 IKLQIWDT--------AGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred EEEEEEEC--------CCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 45566774 332 44555556789999999999998865433211 1 111122 567899999999975
Q ss_pred HHHH-HHHHHHHHH-cCCeEEEeeCccCCCchhhhhHHH
Q 017100 162 MADR-NAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 162 ~~~~-~~~~~~~~~-~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
..+. ....+.+.+ ....++.+|+++|.|+.++.+.+.
T Consensus 127 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 127 RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 4321 222233333 346788999999999988766554
No 325
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.82 E-value=4.1e-05 Score=68.02 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+.++.+||.. |+ ..........+..+|.+++|+|+.++.+.. ...+...+ .+.|++++.||+|+
T Consensus 62 ~~~~~l~D~~--------G~-~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl 132 (190)
T cd00879 62 NIKFKTFDLG--------GH-EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDL 132 (190)
T ss_pred CEEEEEEECC--------CC-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence 3456667753 32 333344456789999999999998653321 12233332 25799999999999
Q ss_pred CC---HHHHHHHHHHHHH-------------cCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 IS---MADRNAWATYFAK-------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~---~~~~~~~~~~~~~-------------~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.. .++.+.+....+. ....++.+|+++|.|+.++.+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 133 PGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred CCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 63 3333333221110 1135788999999999888766543
No 326
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.82 E-value=6.2e-05 Score=66.40 Aligned_cols=103 Identities=16% Similarity=0.032 Sum_probs=65.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL 159 (377)
....+.+||...+ ..........+..+|.+++|+|..++.+..+.. +...+ .+.|+++|.||+||
T Consensus 47 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl 117 (174)
T cd01871 47 KPVNLGLWDTAGQ---------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 117 (174)
T ss_pred EEEEEEEEECCCc---------hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhh
Confidence 3456778886543 333333345688999999999998876544321 21111 25799999999999
Q ss_pred CCHHH-H-------------HHHHHHHHHcC-CeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMAD-R-------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~-~-------------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l 197 (377)
.+... . .+-.++.++.+ ..++.+||++|.|++++.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHH
Confidence 64221 0 11112233445 478899999999998876544
No 327
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.82 E-value=5.3e-05 Score=67.38 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------c-CCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-------~-~k~~ilVlNK~D 158 (377)
...+.+||.... .+........++.+|.+++|+|..++.+..+ +..|+ . ..|.++|.||+|
T Consensus 48 ~~~~~i~Dt~g~---------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~--i~~~~~~i~~~~~~~~~~ivv~nK~D 116 (188)
T cd04125 48 IIKLQIWDTNGQ---------ERFRSLNNSYYRGAHGYLLVYDVTDQESFEN--LKFWINEINRYARENVIKVIVANKSD 116 (188)
T ss_pred EEEEEEEECCCc---------HHHHhhHHHHccCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECCC
Confidence 345667775442 3444455677899999999999987654322 22221 1 468899999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.+.... ..-..+.+..+..++.+|+++|.|++++.+.+.+
T Consensus 117 l~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 117 LVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred CcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9743211 1111223345678999999999999887665443
No 328
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.82 E-value=2e-05 Score=68.33 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=35.9
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i~ 274 (377)
+|+++|.+|||||||++++.... ..+..+.++.. ...+.++. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 48999999999999999998533 23344444322 12233333 367999999864
No 329
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.81 E-value=7.8e-05 Score=64.15 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=67.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL 159 (377)
.+..+.+||. ||+ .+........++.+|.+++|+|+.++.+..... +..+. ...|++++.||+|+
T Consensus 48 ~~~~~~i~D~--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 48 TTVKFEIWDT--------AGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEEEEEeC--------Cch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 3455677774 333 334444446788999999999998764332211 12221 24678999999998
Q ss_pred CCHH--HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~--~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.+.. .......+....+..++.+|+++|.|+.++.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 119 ESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred cccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7432 22333344555678899999999999988866543
No 330
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.81 E-value=0.00014 Score=63.53 Aligned_cols=108 Identities=14% Similarity=0.097 Sum_probs=65.5
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHH-HHHHHhhhcCeEEEEEecCCCCCCCcHH-H----HHHh--cCCCeEEEEEcc
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQWL--GNRKRILVLNRE 157 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k-~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l----~~~l--~~k~~ilVlNK~ 157 (377)
...++.+||...+ ....+ .....++.+|.++.|+|..++.+..+.. + .... .+.|+++|.||+
T Consensus 49 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 119 (170)
T cd04115 49 ERIKVQLWDTAGQ---------ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKC 119 (170)
T ss_pred eEEEEEEEeCCCh---------HHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 3456777886432 33332 3446689999999999998765543321 1 1111 257999999999
Q ss_pred CCCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 158 DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
|+...... ..-..+....+..++.+|++++.+...+.+.+..+..
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 120 DLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred cchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 98644321 1111223344577889999996555555555555543
No 331
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.81 E-value=0.00017 Score=67.62 Aligned_cols=106 Identities=14% Similarity=-0.043 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-------------cCCCeE
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-------------GNRKRI 151 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l-------------~~k~~i 151 (377)
...+.+||.... +.....-...+..+|++++|+|..++.+..+.. +.++. .+.|++
T Consensus 47 ~~~l~I~Dt~G~---------~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI 117 (247)
T cd04143 47 VYQLDILDTSGN---------HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMV 117 (247)
T ss_pred EEEEEEEECCCC---------hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEE
Confidence 356678887543 222222223578899999999988765432211 11111 257999
Q ss_pred EEEEccCCCCHHH--HHHHHHHHHH-cCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 152 LVLNREDMISMAD--RNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 152 lVlNK~DL~~~~~--~~~~~~~~~~-~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+|.||+|+....+ ..+..+++.. .+..++.+||++|.|++++.+.+.++.
T Consensus 118 ivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 118 ICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999974221 1222233322 246789999999999999877776654
No 332
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.81 E-value=6.3e-05 Score=67.69 Aligned_cols=103 Identities=11% Similarity=-0.041 Sum_probs=64.3
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMI 160 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~ 160 (377)
..+.+||.. |+ .+........+..+|++++|+|+.++.+..+. .+.... .+.|+++|.||+|+.
T Consensus 47 ~~l~i~D~~--------G~-~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 47 LTLDILDTS--------GS-YSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEEEEECC--------Cc-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 566778864 32 23333333568999999999998775443321 111111 258999999999997
Q ss_pred CH-HH--HHHHHHHHH-HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SM-AD--RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~-~~--~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+. .. .....+... ..+..++.+|+++|.|+.++.+.+.+
T Consensus 118 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 118 EEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred cccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 63 21 111112222 23467889999999999998776654
No 333
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.81 E-value=2.6e-05 Score=69.16 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=34.2
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeC--C--ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG--K--DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~--~--~~~l~DTPG~ 272 (377)
++|+++|.+|||||||+|+|.+.. ......|.+..+. ..+... . .+.+.||||.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 59 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK-FPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ 59 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc
Confidence 369999999999999999999653 2222222222221 122222 2 3678999995
No 334
>PRK00049 elongation factor Tu; Reviewed
Probab=97.80 E-value=2.1e-05 Score=78.73 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=43.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC------cee---------ccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~------~~~---------v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
..++|+++|.+|+|||||+++|++.. ... -+-..|+|.+...... +..+.++||||..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 45789999999999999999998621 111 1125799999765555 4468999999974
No 335
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.80 E-value=2.7e-05 Score=70.29 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=35.5
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeC--C--ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG--K--DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~--~--~~~l~DTPG~ 272 (377)
++|+++|.+|||||||+|+|.+.. ......|.+..+. ..+.++ . .+.+.||||-
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc
Confidence 368999999999999999998643 2222233333232 233333 2 3679999997
No 336
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.79 E-value=4.6e-05 Score=65.78 Aligned_cols=102 Identities=12% Similarity=-0.095 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL 159 (377)
...+.+||.... ++........+..+|.++.|+|..++.+..+.. +.+.. .+.|+++|.||+|+
T Consensus 48 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl 118 (163)
T cd04176 48 PSVLEILDTAGT---------EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL 118 (163)
T ss_pred EEEEEEEECCCc---------ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 345667886543 333334445688999999999998765433211 11111 26899999999999
Q ss_pred CCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
.+.... .....+....+..++.+|+++|.|+.++...+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 119 ESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred hhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 653221 11122223446778999999999998876544
No 337
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.79 E-value=1.7e-05 Score=84.69 Aligned_cols=58 Identities=26% Similarity=0.456 Sum_probs=43.3
Q ss_pred CCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e-----CCceEEEcCCccc
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-----GKDLEFLDSPGII 273 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-----~~~~~l~DTPG~i 273 (377)
.+++.|+++|++|+|||||+|+|++.. ...+..+|+|.++..+. + +..+.++||||.-
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 456789999999999999999998654 34455678887643322 1 2468999999973
No 338
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.79 E-value=1.2e-05 Score=85.26 Aligned_cols=27 Identities=37% Similarity=0.378 Sum_probs=23.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~ 242 (377)
..++|+++|.+|+|||||+|+|+....
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~ 49 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK 49 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC
Confidence 357899999999999999999986443
No 339
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.78 E-value=2.8e-05 Score=68.40 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+++|.+|||||||+|++.+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~ 27 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999864
No 340
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.77 E-value=4.8e-05 Score=65.93 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh---cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL---GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l---~~k~~ilVlNK~D 158 (377)
...+.+||..... ..........++.+|+++.|+|+.++.+..+. .+.... .+.|+++|.||+|
T Consensus 46 ~~~~~i~D~~g~~--------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 117 (165)
T cd04146 46 QVSLEILDTAGQQ--------QADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKAD 117 (165)
T ss_pred EEEEEEEECCCCc--------ccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 3456678764432 11122334568899999999999876543321 122222 2688999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccC-CCchhhhhHH
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLG-MGTMKLSRLA 197 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g-~gi~~L~~~l 197 (377)
+..... ......+.+..+..++.+|+++| .|++++.+.+
T Consensus 118 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 118 LLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred hHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 864321 12222333445678889999998 4888775544
No 341
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.77 E-value=2.1e-05 Score=68.20 Aligned_cols=83 Identities=14% Similarity=0.002 Sum_probs=55.4
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH---HHHH---hcCCCeEEEEEccCCCCHHHHH-------------HHHHHHHHcC
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPL---MDQW---LGNRKRILVLNREDMISMADRN-------------AWATYFAKQG 176 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~---l~~~---l~~k~~ilVlNK~DL~~~~~~~-------------~~~~~~~~~g 176 (377)
..++.+|++++|+|..++.+..... +..+ ..+.|+++|.||+|+.+..... .-..+....+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 3468999999999998754432211 1111 1258999999999997655321 1122334445
Q ss_pred C-eEEEeeCccCCCchhhhhHHH
Q 017100 177 T-KVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 177 ~-~vi~iSa~~g~gi~~L~~~l~ 198 (377)
. .++.+|+++|.|+.++.+.+.
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 147 AIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred CeEEEEeecCCCCCHHHHHHHHh
Confidence 4 789999999999988866543
No 342
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.77 E-value=2.5e-05 Score=68.48 Aligned_cols=102 Identities=13% Similarity=-0.038 Sum_probs=64.8
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH-HHh---cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD-QWL---GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~-~~l---~~k~~ilVlNK~DL 159 (377)
....+.+||.... .+........+..+|.++.|+|..++.+..+. .+. .+. .+.|.++|.||+|+
T Consensus 46 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl 116 (173)
T cd04130 46 KPVRLQLCDTAGQ---------DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADL 116 (173)
T ss_pred EEEEEEEEECCCC---------hhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhh
Confidence 3455677886543 22222223467899999999999887654332 111 111 25799999999999
Q ss_pred CCHHH--------------HHHHHHHHHHcCC-eEEEeeCccCCCchhhhhH
Q 017100 160 ISMAD--------------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRL 196 (377)
Q Consensus 160 ~~~~~--------------~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~ 196 (377)
.+... .+....+.++.+. .++.+|+++|.|++++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~ 168 (173)
T cd04130 117 RTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDT 168 (173)
T ss_pred ccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 74321 1122233344565 7899999999999887654
No 343
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.77 E-value=2.1e-05 Score=82.38 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=27.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCC-CceeE
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRV 254 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p-gtT~~ 254 (377)
++.|+++|.+|+|||||+|+|++.. + +...+ |+|++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~-v-~~~e~ggiTq~ 40 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSA-V-AKREAGGITQH 40 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc-c-ccccCCceecc
Confidence 4569999999999999999999764 2 33444 46664
No 344
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.76 E-value=0.00011 Score=77.33 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHH--H-HHHHHHHHHHcCCe
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMA--D-RNAWATYFAKQGTK 178 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~--~-~~~~~~~~~~~g~~ 178 (377)
||| ..+...+...+..+|.+++|+|+.++....... +..+. .+.|+++|+||+|+.... . ...+.+.+.-....
T Consensus 78 PG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 78 PGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASE 156 (595)
T ss_pred CCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcce
Confidence 565 556677778899999999999998865443322 22222 367999999999996422 1 12332222111124
Q ss_pred EEEeeCccCCCchhhhhHHHHhh
Q 017100 179 VIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
++++||++|.|+.+|.+.+.+..
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 88999999999998877765543
No 345
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00019 Score=59.38 Aligned_cols=92 Identities=22% Similarity=0.185 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEeeCcc
Q 017100 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQL 186 (377)
Q Consensus 108 ~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g-~~vi~iSa~~ 186 (377)
...-..+.-....+|+|+.|..+.+|.+...+.+.... .+|+|=|++|+||.++.++..-..++++.| .+++.+|+..
T Consensus 52 ~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d 130 (148)
T COG4917 52 PRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVD 130 (148)
T ss_pred hHHHHHHHHHhhccceeeeeecccCccccCCccccccc-ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccC
Confidence 44555566667899999999999999888877665444 456999999999998777776667788888 5677899999
Q ss_pred CCCchhhhhHHHHh
Q 017100 187 GMGTMKLSRLAKAL 200 (377)
Q Consensus 187 g~gi~~L~~~l~~l 200 (377)
..|+++|...+..+
T Consensus 131 ~~gv~~l~~~L~~~ 144 (148)
T COG4917 131 NQGVEELVDYLASL 144 (148)
T ss_pred cccHHHHHHHHHhh
Confidence 99999998877654
No 346
>PRK12736 elongation factor Tu; Reviewed
Probab=97.76 E-value=0.00021 Score=71.63 Aligned_cols=83 Identities=18% Similarity=0.087 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH-----HHHHHHHHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~-----~~~~~~~~~ 175 (377)
||| +++.+.+..-+..+|++++|+|+..+......+...++ .+.| .++++||+|+++.++.. +..+++...
T Consensus 83 PGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 83 PGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 887 45666666667899999999999876544443433333 2567 56889999998544322 233344444
Q ss_pred C-----CeEEEeeCccC
Q 017100 176 G-----TKVIFSNGQLG 187 (377)
Q Consensus 176 g-----~~vi~iSa~~g 187 (377)
+ .+++++|+.+|
T Consensus 162 ~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 162 DFPGDDIPVIRGSALKA 178 (394)
T ss_pred CCCcCCccEEEeecccc
Confidence 4 46899999987
No 347
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=7.4e-05 Score=63.34 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=74.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE 157 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~ 157 (377)
..+++.|||++.+ ++.....-.+++.++-+|+.+|..+..+... ++.|. .+.++|+|.|||
T Consensus 68 kRiklQiwDTagq---------EryrtiTTayyRgamgfiLmyDitNeeSf~s--vqdw~tqIktysw~naqvilvgnKC 136 (193)
T KOG0093|consen 68 KRIKLQIWDTAGQ---------ERYRTITTAYYRGAMGFILMYDITNEESFNS--VQDWITQIKTYSWDNAQVILVGNKC 136 (193)
T ss_pred cEEEEEEEecccc---------hhhhHHHHHHhhccceEEEEEecCCHHHHHH--HHHHHHHheeeeccCceEEEEeccc
Confidence 4488899997654 7777777788999999999999887554433 33443 168999999999
Q ss_pred CCCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 158 DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
|+-++..+ +.-.....+.|.+++..|++.+.+++++.+.+
T Consensus 137 Dmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 137 DMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred CCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 99876542 23334556778889999999999988765443
No 348
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.75 E-value=3.1e-05 Score=70.64 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=36.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEe--CC--ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GK--DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~--~~--~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|+|.+.+-.. ...|.++.+.. .+.+ +. .+.+.||||--
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~-~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE-VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 579999999999999999999654222 22243333332 2222 22 46799999963
No 349
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.75 E-value=4e-05 Score=67.59 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=36.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||++++....- ....|.+..+...+.. .-.+.+.||||.-
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccceEEEEECCEEEEEEECCCCh
Confidence 46899999999999999999964332 2333433333333333 2357899999974
No 350
>PTZ00369 Ras-like protein; Provisional
Probab=97.74 E-value=4.2e-05 Score=68.31 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=34.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||++++.+..-. ...+..|.+.. ..+.++. .+.++||||.-
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCc
Confidence 468999999999999999999864321 11111121111 1122332 35689999974
No 351
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.74 E-value=8.7e-05 Score=68.27 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=65.8
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhh-hcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEEc
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLK-LMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLNR 156 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~-~aDlIL~V~Dar~p~~~~~~-~-l~~~l-----~~k~~ilVlNK 156 (377)
..+.++.+||...+. .|. . ...+. .+|++++|+|+.++.+..+. + +..+. .+.|+++|.||
T Consensus 47 ~~~~~l~i~Dt~G~~-~~~-------~---~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 47 GEESTLVVIDHWEQE-MWT-------E---DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred CEEEEEEEEeCCCcc-hHH-------H---hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 345677889875552 111 1 12345 89999999999887554321 1 11111 25799999999
Q ss_pred cCCCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 157 EDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 157 ~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+|+...... +....+....+..++.+|+++|.|++++.+.+..
T Consensus 116 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~ 160 (221)
T cd04148 116 SDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVR 160 (221)
T ss_pred hhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 999754321 1112223344678899999999999988766543
No 352
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.73 E-value=0.00013 Score=73.84 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCC--CCCCCcHHHHHH---hcCCCeEEEEEccCCCCH--HH----HHHHHHHH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPLMDQW---LGNRKRILVLNREDMISM--AD----RNAWATYF 172 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~--p~~~~~~~l~~~---l~~k~~ilVlNK~DL~~~--~~----~~~~~~~~ 172 (377)
||| +++.+.+...+..+|++++|+|+.+ .......+...+ +...++++++||+|+.+. +. .++..+++
T Consensus 92 pG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l 170 (425)
T PRK12317 92 PGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLL 170 (425)
T ss_pred CCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHH
Confidence 555 4455555566789999999999987 333322222222 223468899999999752 11 12222334
Q ss_pred HHcC-----CeEEEeeCccCCCchhh
Q 017100 173 AKQG-----TKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 173 ~~~g-----~~vi~iSa~~g~gi~~L 193 (377)
...+ ..++++|+++|.|+.++
T Consensus 171 ~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 171 KMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HhhCCCcCcceEEEeecccCCCcccc
Confidence 4444 36889999999999764
No 353
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.73 E-value=0.00017 Score=73.91 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH---HHHHHhcCCCeEEEEEccCCCCHH--HHHHHH----HHHHH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWLGNRKRILVLNREDMISMA--DRNAWA----TYFAK 174 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~---~l~~~l~~k~~ilVlNK~DL~~~~--~~~~~~----~~~~~ 174 (377)
||| +.+.+.+...+..+|++++|+|+..+...... .+...+..+++++++||+|+++.. ...... .++..
T Consensus 115 PGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~ 193 (474)
T PRK05124 115 PGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQ 193 (474)
T ss_pred CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHh
Confidence 786 45666666668999999999999876544322 233344456788999999998422 122222 22222
Q ss_pred c----CCeEEEeeCccCCCchhhh
Q 017100 175 Q----GTKVIFSNGQLGMGTMKLS 194 (377)
Q Consensus 175 ~----g~~vi~iSa~~g~gi~~L~ 194 (377)
. ...++++|+++|.|+..+.
T Consensus 194 ~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 194 LPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred cCCCCCceEEEEEeecCCCccccc
Confidence 2 2678999999999987653
No 354
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.73 E-value=3.7e-05 Score=67.50 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=35.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeC---CceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~~~l~DTPG~i 273 (377)
+|++||.+|||||||+|++.+.. ....-.|.+..+.. .+.++ ..+.+.||||.-
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 58999999999999999999643 22222333333332 22232 257899999974
No 355
>PLN03108 Rab family protein; Provisional
Probab=97.73 E-value=5e-05 Score=69.17 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=37.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCC--CceeEEEEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|++... .....| |.+.....+.++. .+.+.||||-.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~-~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 36899999999999999999996532 222223 3333333334432 36799999964
No 356
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.73 E-value=2.2e-05 Score=67.08 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=32.0
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i 273 (377)
||++||.+++|||||+++|.+... ...-|..++ ...+ .+||||=.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~---~~~~--~IDTPGEy 47 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIE---YYDN--TIDTPGEY 47 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeE---eccc--EEECChhh
Confidence 699999999999999999997542 122333333 3333 49999964
No 357
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.73 E-value=3.6e-05 Score=69.33 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=35.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|++.+... ......++.+. ..+.++. .+.++||||..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 489999999999999999986542 22233333222 2233333 46789999974
No 358
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.72 E-value=7.9e-05 Score=66.54 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=66.5
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHH---hcCCCeEEEEEccC
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQW---LGNRKRILVLNRED 158 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~---l~~~---l~~k~~ilVlNK~D 158 (377)
....++.+||...+ ..........+..+|++++|+|..++.+..+.. +..+ ..+.|+++|.||+|
T Consensus 45 ~~~~~l~i~Dt~G~---------~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~D 115 (189)
T cd04134 45 GLHIELSLWDTAGQ---------EEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCD 115 (189)
T ss_pred CEEEEEEEEECCCC---------hhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 34467788887654 222222224578999999999988776553321 1122 12679999999999
Q ss_pred CCCHHHHH--------------HHHHHHHHcC-CeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMADRN--------------AWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~~~--------------~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
|....... .-.+...+.+ ..++.+||++|.|++++.+.+.+
T Consensus 116 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~ 171 (189)
T cd04134 116 LREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAAR 171 (189)
T ss_pred hccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHH
Confidence 97543211 1112223334 56889999999999987665543
No 359
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.72 E-value=4.2e-05 Score=66.78 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=33.4
Q ss_pred eeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeCC---ceEEEcCCccc
Q 017100 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~l~DTPG~i 273 (377)
|+++|.+|||||||+|++.+.. ......|.+.... ..+.++. .+.+.||||--
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence 5799999999999999999654 2222223221111 1223332 36799999964
No 360
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.72 E-value=0.00036 Score=59.63 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=58.2
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHH----H--HcCCeEEEeeCccCCCc
Q 017100 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF----A--KQGTKVIFSNGQLGMGT 190 (377)
Q Consensus 119 ~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~~~~~~----~--~~g~~vi~iSa~~g~gi 190 (377)
+..++++.|+|...+......++.+++. +.|+++|+||+|+.+..+.......+ + .....++++|++++.|+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGI 159 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence 5678899999998765555555555554 57899999999998765543332222 2 12357889999999999
Q ss_pred hhhhhHHHHh
Q 017100 191 MKLSRLAKAL 200 (377)
Q Consensus 191 ~~L~~~l~~l 200 (377)
.++.+.+.++
T Consensus 160 ~~l~~~l~~~ 169 (170)
T cd01876 160 DELRALIEKW 169 (170)
T ss_pred HHHHHHHHHh
Confidence 9888877653
No 361
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.72 E-value=3.5e-05 Score=63.01 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=35.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCCce---eccCCCCceeEEEEEEeC---CceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~---~v~~~pgtT~~~~~~~~~---~~~~l~DTPG~i~ 274 (377)
||.++|.+||||||||++|.+.... ......+.|......... ..+.+.|++|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 62 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE 62 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce
Confidence 5899999999999999999976543 122233444433332221 2367899999853
No 362
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.71 E-value=0.00011 Score=66.98 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---hc--CCCeEEEEEccCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---LG--NRKRILVLNREDMI 160 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~---l~--~k~~ilVlNK~DL~ 160 (377)
..+.+||...+ ++........++.+|.+++|+|..++.+..+.. +... .. ..++++|.||+|+.
T Consensus 52 ~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 52 IKLQLWDTAGQ---------ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred EEEEEEeCCcc---------hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 45677775332 444454557789999999999998765433211 1111 11 34578899999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.... ...-..+.+..+..++.+|+++|.|+.++.+.+.+
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 123 SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5322 11112233445678899999999999988776654
No 363
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=5.8e-05 Score=66.50 Aligned_cols=122 Identities=11% Similarity=0.070 Sum_probs=85.0
Q ss_pred EEeecCCCCCCCccccchh--hhcccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc
Q 017100 61 SWHGGNSNNSNGSIEAYEE--ECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH 138 (377)
Q Consensus 61 ~~~~~~~~~~~~~ig~gk~--E~~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~ 138 (377)
++-+|-.|.-..-||-.+- +.-+....+.+.|||+..+ +++....+.+.+.+.-+|+|.|.....+...
T Consensus 26 f~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq---------e~frsv~~syYr~a~GalLVydit~r~sF~h 96 (216)
T KOG0098|consen 26 FTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ---------ESFRSVTRSYYRGAAGALLVYDITRRESFNH 96 (216)
T ss_pred HhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCc---------HHHHHHHHHHhccCcceEEEEEccchhhHHH
Confidence 3445555544444665554 4467778888899987665 7788888899999999999999865544432
Q ss_pred HHHHHHhc--------CCCeEEEEEccCCCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhh
Q 017100 139 PLMDQWLG--------NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 139 ~~l~~~l~--------~k~~ilVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L 193 (377)
+..|+. +..++++.||+||...+++ ++-..+-+++|.-...+|++++.|+++.
T Consensus 97 --L~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 97 --LTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred --HHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 444432 5567899999999755432 2222344667877788999999998764
No 364
>CHL00071 tufA elongation factor Tu
Probab=97.71 E-value=0.00022 Score=71.80 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH-----HHHHHHHHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~-----~~~~~~~~~ 175 (377)
||| +++.+.+...+..+|++++|+|++.+......++..++ .+.| .++++||+|+++.++.. +...+++..
T Consensus 83 PGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~ 161 (409)
T CHL00071 83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY 161 (409)
T ss_pred CCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 887 46777777778999999999999876654443443333 2567 56889999998754422 233444444
Q ss_pred C-----CeEEEeeCccCCC
Q 017100 176 G-----TKVIFSNGQLGMG 189 (377)
Q Consensus 176 g-----~~vi~iSa~~g~g 189 (377)
+ ..++++|+..|.+
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 162 DFPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCCcceEEEcchhhccc
Confidence 3 4688999988753
No 365
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.71 E-value=0.00014 Score=73.57 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEccCCCC--HHH----HHHHHHH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDMIS--MAD----RNAWATY 171 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~------l~~~l~~k~~ilVlNK~DL~~--~~~----~~~~~~~ 171 (377)
||| +++.+.+...+..+|++++|+|+..+.+....+ +.+.+...++++++||+|+.+ ++. ..++.++
T Consensus 93 pGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~ 171 (426)
T TIGR00483 93 PGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNL 171 (426)
T ss_pred CCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHH
Confidence 565 556666666788999999999999874332222 222223456888999999974 322 2334444
Q ss_pred HHHcC-----CeEEEeeCccCCCchh
Q 017100 172 FAKQG-----TKVIFSNGQLGMGTMK 192 (377)
Q Consensus 172 ~~~~g-----~~vi~iSa~~g~gi~~ 192 (377)
++..+ ..++++|+++|.|+.+
T Consensus 172 ~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 172 IKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHcCCCcccceEEEeeccccccccc
Confidence 55444 4689999999999875
No 366
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.70 E-value=3.9e-05 Score=70.58 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=34.2
Q ss_pred eeeEeecCCCCcchhhhhhhcCCce-eccCCCC-ceeEEEEEEe---CCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPG-VTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pg-tT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|++....-. ......+ .+.....+.+ ...+.++||||.-
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 6999999999999999999744321 1111111 1112222333 2347899999985
No 367
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.70 E-value=0.00046 Score=69.13 Aligned_cols=84 Identities=20% Similarity=0.118 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHHHH-----HHHHHHHHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~i-lVlNK~DL~~~~~~~-----~~~~~~~~~ 175 (377)
||| +++.+.+..-+..+|.+++|+|++.+......+...++ .+.|.+ +++||+|+++.++.. +..+++...
T Consensus 83 pGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 83 PGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred Cch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 787 55666666667889999999999875443333322332 256665 689999998754321 233344444
Q ss_pred C-----CeEEEeeCccCC
Q 017100 176 G-----TKVIFSNGQLGM 188 (377)
Q Consensus 176 g-----~~vi~iSa~~g~ 188 (377)
+ .+++++|+.+|.
T Consensus 162 ~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCCccCccEEECcccccc
Confidence 3 578999998874
No 368
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.70 E-value=0.00023 Score=75.59 Aligned_cols=88 Identities=23% Similarity=0.308 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH---HhcCCCeEEEEEccCCCC--HHHHH----HHHHHHHH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ---WLGNRKRILVLNREDMIS--MADRN----AWATYFAK 174 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~---~l~~k~~ilVlNK~DL~~--~~~~~----~~~~~~~~ 174 (377)
||| +++.+.+...+..+|++++|+|+..+......+... .+..+++++++||+|+++ .+... +..+++.+
T Consensus 112 PG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~ 190 (632)
T PRK05506 112 PGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAK 190 (632)
T ss_pred CCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHH
Confidence 777 456666667789999999999998776554333222 233467888999999985 22222 22223334
Q ss_pred cC---CeEEEeeCccCCCchh
Q 017100 175 QG---TKVIFSNGQLGMGTMK 192 (377)
Q Consensus 175 ~g---~~vi~iSa~~g~gi~~ 192 (377)
.+ ..++++|+++|.|+.+
T Consensus 191 ~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 191 LGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cCCCCccEEEEecccCCCccc
Confidence 44 3589999999999874
No 369
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.69 E-value=6e-05 Score=65.86 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=33.6
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||++++.+..- ......++.+ ...+.++. .+.++||||.-
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCch
Confidence 699999999999999999996431 1211112211 11223322 46799999963
No 370
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.69 E-value=5.1e-05 Score=75.94 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=42.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC------Ccee---------ccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~------~~~~---------v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
..++|+++|..|+|||||+++|++. .... .+-..|+|.+.....+ +..+.++||||..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3578999999999999999999832 1111 1123799999766555 3458899999974
No 371
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.68 E-value=6.2e-05 Score=65.28 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=35.3
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||++++.... ......|....+. ..+.++. .+.+.||+|--
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 68999999999999999998643 2222233333222 2333333 46789999963
No 372
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.68 E-value=4.7e-05 Score=79.86 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=27.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCC-CceeE
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRV 254 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p-gtT~~ 254 (377)
+++.|+++|.+|+|||||+|+|++.. .++..+ |.|.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ 42 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQH 42 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEe
Confidence 45679999999999999999998653 233343 35544
No 373
>PRK12736 elongation factor Tu; Reviewed
Probab=97.67 E-value=4.2e-05 Score=76.61 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=42.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC------cee---------ccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~------~~~---------v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
..++|+++|.+|+|||||+++|++.. ... .+-..|+|.+...... +..+.++||||..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 35789999999999999999998521 111 1125689999765555 3468999999953
No 374
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.67 E-value=0.00027 Score=75.63 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH--HHHHHHHHH----HHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYF----AKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~~~~~~----~~~ 175 (377)
||| +.+.......+..+|++++|+|+.++......+....+ .+.|+++++||+|+.... ....+...+ ...
T Consensus 303 PGh-e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 303 PGH-EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW 381 (742)
T ss_pred CcH-HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence 787 55666666789999999999999875433322222222 378999999999997532 222222111 112
Q ss_pred C--CeEEEeeCccCCCchhhhhHHHHhh
Q 017100 176 G--TKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 176 g--~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
| ..++++||++|.|+..|.+.+..+.
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 3 5789999999999999887766553
No 375
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.66 E-value=0.00014 Score=63.47 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=64.3
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEcc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNRE 157 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~------l~~~l~~k~~ilVlNK~ 157 (377)
......+.+||.... ..........+..+|+++.++|..++.+..+.. +.....+.|+++|.||+
T Consensus 45 ~~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 115 (175)
T cd01870 45 DGKQVELALWDTAGQ---------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 115 (175)
T ss_pred CCEEEEEEEEeCCCc---------hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence 334456788886543 122222224578999999999988664432221 11112378999999999
Q ss_pred CCCCHHHHH--------------HHHHHHHHcC-CeEEEeeCccCCCchhhhhHHH
Q 017100 158 DMISMADRN--------------AWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 158 DL~~~~~~~--------------~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
|+.+..... .-.++....+ ..++.+||+.|.|++++.+.+.
T Consensus 116 Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 171 (175)
T cd01870 116 DLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMAT 171 (175)
T ss_pred hcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHH
Confidence 987542211 1111122233 4788999999999998876654
No 376
>PLN03126 Elongation factor Tu; Provisional
Probab=97.65 E-value=5.1e-05 Score=77.64 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=42.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCce---------------eccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~---------------~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
..++|+++|.+|+|||||+|+|+..... .-+...|+|.+.....+ +..+.++||||..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 4678999999999999999999852111 11234688888655443 4578999999974
No 377
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.65 E-value=0.0002 Score=61.09 Aligned_cols=94 Identities=13% Similarity=0.008 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCCCCHHH--HHHHHHHHHH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAK 174 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL~~~~~--~~~~~~~~~~ 174 (377)
||+ ..........+..+|+++.|+|..++.+..+. .+..... ..|+++|+||+|+..... .+....+..+
T Consensus 55 ~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 133 (160)
T cd00876 55 AGQ-EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE 133 (160)
T ss_pred CCh-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH
Confidence 444 33444455678999999999998765432221 1122222 689999999999986321 1222233445
Q ss_pred cCCeEEEeeCccCCCchhhhhHHH
Q 017100 175 QGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.+..++.+|++.+.|++++.+.+.
T Consensus 134 ~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 134 WGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred cCCcEEEeccCCCCCHHHHHHHHH
Confidence 567889999999999988866553
No 378
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00014 Score=61.71 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=89.1
Q ss_pred eEEeecCCCCCCCccccchh-hh-cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC
Q 017100 60 SSWHGGNSNNSNGSIEAYEE-EC-DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT 137 (377)
Q Consensus 60 ~~~~~~~~~~~~~~ig~gk~-E~-~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~ 137 (377)
.++|-.--|--.--||-++. .. .+....+.+.|||++.+ +++......+.+.++.+++|.|.....+..
T Consensus 26 rftqglfppgqgatigvdfmiktvev~gekiklqiwdtagq---------erfrsitqsyyrsahalilvydiscqpsfd 96 (213)
T KOG0095|consen 26 RFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ---------ERFRSITQSYYRSAHALILVYDISCQPSFD 96 (213)
T ss_pred hhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch---------HHHHHHHHHHhhhcceEEEEEecccCcchh
Confidence 66777776766666888886 22 66777888999998765 888888899999999999999998776665
Q ss_pred c-HH----HHHHhcCC-CeEEEEEccCCCCHHHHH-HHHHHHHH-cCCeEEEeeCccCCCchhhh
Q 017100 138 H-PL----MDQWLGNR-KRILVLNREDMISMADRN-AWATYFAK-QGTKVIFSNGQLGMGTMKLS 194 (377)
Q Consensus 138 ~-~~----l~~~l~~k-~~ilVlNK~DL~~~~~~~-~~~~~~~~-~g~~vi~iSa~~g~gi~~L~ 194 (377)
+ ++ |+++..++ -.|+|.||+|+.+..++. ...+.|.+ +..-++.+|++...++++|.
T Consensus 97 clpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 97 CLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred hhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 5 22 33333333 347899999999875543 33333433 23335568999888888764
No 379
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.64 E-value=6.2e-05 Score=68.32 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=35.6
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-----CCceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-----~~~~~l~DTPG~i 273 (377)
+|.++|.+|||||||+|.|..... ....+.++-....+.. +..+.|+||||..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~--~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY--RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--CCccCcEeecceEEEeecCCCCceEEEEECCCCH
Confidence 589999999999999999986532 1222222222222222 3468899999975
No 380
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.64 E-value=0.00066 Score=60.92 Aligned_cols=94 Identities=21% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhh---cCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHH-cC----
Q 017100 107 IAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-QG---- 176 (377)
Q Consensus 107 ~~~~~k~l~~~i~~---aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~~~~~~~~-~g---- 176 (377)
.++..+.+.+++.. -..+++++|+|.+....+.++.+++. +.|.++|+||+|-++..+..+-.....+ .+
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~ 169 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC
Confidence 45566666677633 45678888999999888888888775 7899999999999987665433333331 11
Q ss_pred C--eEEEeeCccCCCchhhhhHHHHh
Q 017100 177 T--KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 177 ~--~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
. .++++|+..+.|+++|.+.|.+.
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHH
Confidence 2 27889999999999888877654
No 381
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.63 E-value=7.8e-05 Score=66.27 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=36.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCcc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~ 272 (377)
.++|.++|.+|||||||++++....-. ...|.+..+...+.. +-.+.+.||||-
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g~~~~~~~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc--cccCCcceeEEEEEECCEEEEEEECCCC
Confidence 468999999999999999999854322 223332233333333 235789999995
No 382
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.62 E-value=0.00025 Score=61.64 Aligned_cols=103 Identities=9% Similarity=0.028 Sum_probs=65.3
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh--------cCCCeEEEEE
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL--------GNRKRILVLN 155 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l--------~~k~~ilVlN 155 (377)
....+.+||. ||+ .+........++.+|.++.|+|..++.+..... +..+. .+.|+++|.|
T Consensus 52 ~~~~l~i~D~--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 122 (170)
T cd04116 52 HFVTLQIWDT--------AGQ-ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGN 122 (170)
T ss_pred eEEEEEEEeC--------CCh-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 3455667774 333 445555557789999999999988765433221 11111 1358999999
Q ss_pred ccCCCCHHH-HHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHH
Q 017100 156 REDMISMAD-RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 156 K~DL~~~~~-~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l 197 (377)
|+|+..... .....++.++.+ ..++.+|+++|.|+.++.+.+
T Consensus 123 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 123 KNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred CccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHH
Confidence 999964321 122333344555 468899999999988775543
No 383
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.62 E-value=6.1e-05 Score=69.36 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=34.8
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|++....-. ...|-+..+...... .-.+.++||||.-
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~Tig~~~~~~~~~~~~l~iwDt~G~e 55 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVSTVGGAFYLKQWGPYNISIWDTAGRE 55 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCCccceEEEEEEeeEEEEEEEeCCCcc
Confidence 36899999999999999999865422 122211112222222 2357899999974
No 384
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.62 E-value=0.00029 Score=61.58 Aligned_cols=102 Identities=9% Similarity=0.025 Sum_probs=62.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (377)
.+..+.+||...+ .+.......+++.+|.+++|+|+.++.+..+ ..+..++ .++|+++|.||+|
T Consensus 41 ~~~~~~i~D~~G~---------~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~D 111 (167)
T cd04161 41 DKYEVCIFDLGGG---------ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQD 111 (167)
T ss_pred CCEEEEEEECCCc---------HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCC
Confidence 3566778886443 3444555678999999999999987643222 1223222 2679999999999
Q ss_pred CCCHHHHHHHHHHHH------HcC--CeEEEeeCccC------CCchhhhhH
Q 017100 159 MISMADRNAWATYFA------KQG--TKVIFSNGQLG------MGTMKLSRL 196 (377)
Q Consensus 159 L~~~~~~~~~~~~~~------~~g--~~vi~iSa~~g------~gi~~L~~~ 196 (377)
+..........+.+. +.+ ..++.+|+++| .|+.+-.+.
T Consensus 112 l~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~w 163 (167)
T cd04161 112 KKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRW 163 (167)
T ss_pred CcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHH
Confidence 965432222222211 112 34666999998 565544333
No 385
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.62 E-value=0.0001 Score=67.71 Aligned_cols=58 Identities=21% Similarity=0.152 Sum_probs=38.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC-ceeccCCCCceeEEEEEEeC---CceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~---~~~~l~DTPG~i 273 (377)
..++|++||.+|||||||++++.... .....+..|++.....+..+ -.+.+.||||--
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 45789999999999999999986433 12233444544443333332 257899999974
No 386
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.62 E-value=7.8e-05 Score=67.75 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=36.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCC-ceeEEEEEEeCC----ceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKWVRFGK----DLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg-tT~~~~~~~~~~----~~~l~DTPG~i~ 274 (377)
.+|+++|.+|||||||+|+|.+.... .+..|. .+.......... .+.++||+|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~ 66 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP-EGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE 66 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc-ccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH
Confidence 68999999999999999999965432 222222 222222222222 377899999953
No 387
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.61 E-value=3.7e-05 Score=63.72 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=32.6
Q ss_pred EeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-----CCceEEEcCCcccc
Q 017100 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGIIP 274 (377)
Q Consensus 222 lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-----~~~~~l~DTPG~i~ 274 (377)
++|.+|+|||||+|+|.+.... ......+..+...... +..+.++||||...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHH
Confidence 5899999999999999975532 1111111122222111 34688999999863
No 388
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.61 E-value=5.9e-05 Score=64.63 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=75.4
Q ss_pred cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEE
Q 017100 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLN 155 (377)
Q Consensus 82 ~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~-~k~~ilVlN 155 (377)
-++...+|+-|||++.+ +++-..-.-+.+.++-+|+|+|..+..+.... ++..+++ ...++||.|
T Consensus 56 n~ed~ra~L~IWDTAGQ---------ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGN 126 (218)
T KOG0088|consen 56 NVEDCRADLHIWDTAGQ---------ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGN 126 (218)
T ss_pred ccccceeeeeeeeccch---------HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecC
Confidence 34456688999998765 44333223457899999999999876554332 2333333 467899999
Q ss_pred ccCCCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 156 REDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 156 K~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
|+||-....+ ++-..|.+..|...+.+|++.+.|+.+|.+.+.
T Consensus 127 KiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 127 KIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred cccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 9999765532 344556677788889999999999998866554
No 389
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.61 E-value=0.00035 Score=59.28 Aligned_cols=124 Identities=10% Similarity=-0.011 Sum_probs=85.0
Q ss_pred chhhhcccccCCcEEEEcCCCCC-cCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHhc-----CC
Q 017100 77 YEEECDWADLDADLYYWTKSLRP-VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NR 148 (377)
Q Consensus 77 gk~E~~~~~~~~d~vi~d~~L~~-~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~--~~~~l~~~l~-----~k 148 (377)
++.|..+++.++++.-.+..-.. .-|.-|.+.++......+.+.+++|++++||.+|..- ...++..++. +.
T Consensus 44 ~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gi 123 (186)
T KOG0075|consen 44 QYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGI 123 (186)
T ss_pred cchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCC
Confidence 45577888888887777655333 3477666677777777889999999999999886432 2345666654 68
Q ss_pred CeEEEEEccCCCCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 149 KRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 149 ~~ilVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
|.+++.||.|+-+.-......+.+. ....-++.+|++...+++.+.+.+.+.
T Consensus 124 p~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 124 PLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred cEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 9999999999865433233322221 111346779999999988887776543
No 390
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.61 E-value=8.9e-05 Score=68.46 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=38.9
Q ss_pred CCceeeeEeecCCCCcchhhhhhhcC-CceeccCCCCceeEEEEEEeCCceEEEcCCccc
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLLKR-RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~~~-~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i 273 (377)
..+..|+++|.||+|||||+|+|.+. ....+....|+. .+ ....+..+.++||||.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH
Confidence 34567999999999999999999865 222334445531 11 11235678999999965
No 391
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.61 E-value=0.00011 Score=64.03 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=63.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+.++.+||.. |+ .+........++.+|.+++|+|+.++....+ ..+...+ .+.|+++++||+|+
T Consensus 57 ~~~~~~~D~~--------G~-~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (173)
T cd04155 57 GFKLNVWDIG--------GQ-RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL 127 (173)
T ss_pred CEEEEEEECC--------CC-HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence 4567777743 22 3444455567899999999999876432211 1122222 25799999999999
Q ss_pred CCHHHHHHHHHHHHHcC-----CeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMADRNAWATYFAKQG-----TKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L~~~l 197 (377)
......+...+.+.-.. ..++.+|+++|.|++++.+.+
T Consensus 128 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 128 ATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred ccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 76443333333221111 246789999999988876554
No 392
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.60 E-value=0.0001 Score=64.83 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=34.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE-EE-EEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~~-~~~~~~---~~~l~DTPG~i 273 (377)
++|+++|.+|||||||++++....- . ....-|+.+ .+ .+.+++ .+.++||||..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF-P-DYHDPTIEDAYKQQARIDNEPALLDILDTAGQA 61 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-C-CCcCCcccceEEEEEEECCEEEEEEEEeCCCch
Confidence 5799999999999999999986432 1 111112211 11 223332 36789999974
No 393
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.60 E-value=6.9e-05 Score=79.00 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=41.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCC--ceeccCCCCceeEEEEEEe----CCceEEEcCCcc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGI 272 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~--~~~v~~~pgtT~~~~~~~~----~~~~~l~DTPG~ 272 (377)
.|+++|.+|+|||||+|+|++.+ ....+...|.|.+.....+ +..+.++||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence 48999999999999999999743 2233445799988754433 345789999996
No 394
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.59 E-value=7.7e-05 Score=70.74 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.6
Q ss_pred eeeEeecCCCCcchhhhhhhc
Q 017100 219 RAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~ 239 (377)
+|+++|.+|+|||||+|+|+.
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~ 24 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLL 24 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 395
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.59 E-value=0.0003 Score=64.88 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=65.9
Q ss_pred ccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEc
Q 017100 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNR 156 (377)
Q Consensus 83 ~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~----~l~~k~~ilVlNK 156 (377)
+......+.+||...+ ..+.......+..+|++|+|+|..++.+..+.. +.. ...+.|++||.||
T Consensus 44 ~~~~~v~L~iwDt~G~---------e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK 114 (222)
T cd04173 44 IDKRRIELNMWDTSGS---------SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCK 114 (222)
T ss_pred ECCEEEEEEEEeCCCc---------HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEEC
Confidence 3444567778887654 333333335689999999999998875543321 111 1236799999999
Q ss_pred cCCCCHHH--------------HHHHHHHHHHcC-CeEEEeeCccCC-CchhhhhHH
Q 017100 157 EDMISMAD--------------RNAWATYFAKQG-TKVIFSNGQLGM-GTMKLSRLA 197 (377)
Q Consensus 157 ~DL~~~~~--------------~~~~~~~~~~~g-~~vi~iSa~~g~-gi~~L~~~l 197 (377)
+||..... .+.-..+-++.| ..++.+||+++. |++++....
T Consensus 115 ~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 115 LDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred cccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHH
Confidence 99954210 011112233455 478899999887 487775543
No 396
>PRK12735 elongation factor Tu; Reviewed
Probab=97.58 E-value=0.0004 Score=69.57 Aligned_cols=84 Identities=21% Similarity=0.124 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHHHH-----HHHHHHHHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~i-lVlNK~DL~~~~~~~-----~~~~~~~~~ 175 (377)
||| +.+.+.+...+..+|++++|+|+.........+...++ .+.|.+ +++||+|+++.++.. +...++...
T Consensus 83 PGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred CCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 887 56667777778899999999999875433322222332 267766 579999998643322 222334433
Q ss_pred C-----CeEEEeeCccCC
Q 017100 176 G-----TKVIFSNGQLGM 188 (377)
Q Consensus 176 g-----~~vi~iSa~~g~ 188 (377)
+ ..++++|+.+|.
T Consensus 162 ~~~~~~~~ii~~Sa~~g~ 179 (396)
T PRK12735 162 DFPGDDTPIIRGSALKAL 179 (396)
T ss_pred CCCcCceeEEecchhccc
Confidence 2 568899998874
No 397
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.58 E-value=0.00034 Score=71.19 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHHHh-----cCC-CeEEEEEccCCCCHH--------HH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQWL-----GNR-KRILVLNREDMISMA--------DR 165 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~----~~~~l~~~l-----~~k-~~ilVlNK~DL~~~~--------~~ 165 (377)
||| +++.+.+...+..+|.++.|+|+...... ...+..+.+ .+. ++++++||+|+.+.. ..
T Consensus 93 PGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~ 171 (447)
T PLN00043 93 PGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIV 171 (447)
T ss_pred CCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHH
Confidence 887 67778888889999999999999874211 112222221 245 467889999987321 12
Q ss_pred HHHHHHHHHcC-----CeEEEeeCccCCCch
Q 017100 166 NAWATYFAKQG-----TKVIFSNGQLGMGTM 191 (377)
Q Consensus 166 ~~~~~~~~~~g-----~~vi~iSa~~g~gi~ 191 (377)
++...++.+.| ..++++|+..|.|+.
T Consensus 172 ~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 172 KEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred HHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 33445555555 458999999999874
No 398
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.57 E-value=6.4e-05 Score=65.44 Aligned_cols=31 Identities=42% Similarity=0.608 Sum_probs=25.4
Q ss_pred eeEeecCCCCcchhhhhhhcCCceeccCCCC
Q 017100 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg 250 (377)
|+++|-.++|||||||+|+|.....++..|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~ 31 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC 31 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccc
Confidence 6899999999999999999987666666553
No 399
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.57 E-value=0.00025 Score=74.34 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC--HHHHHHHHHHH----HHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS--MADRNAWATYF----AKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~--~~~~~~~~~~~----~~~ 175 (377)
||| +.+..........+|++++|+|+.+.......+..... .+.|+++++||+|+.. .+....+...+ ...
T Consensus 143 PGh-e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~ 221 (587)
T TIGR00487 143 PGH-EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDW 221 (587)
T ss_pred CCC-cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhc
Confidence 676 34444445668999999999999875433332222222 3789999999999953 22232222111 011
Q ss_pred C--CeEEEeeCccCCCchhhhhHHHH
Q 017100 176 G--TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 176 g--~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+ ..++++||++|.|+.+|.+.+..
T Consensus 222 ~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 222 GGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCCceEEEEECCCCCChHHHHHhhhh
Confidence 1 36889999999999998776643
No 400
>PRK00049 elongation factor Tu; Reviewed
Probab=97.56 E-value=0.00051 Score=68.87 Aligned_cols=84 Identities=21% Similarity=0.124 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHHHH-----HHHHHHHHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~i-lVlNK~DL~~~~~~~-----~~~~~~~~~ 175 (377)
||| .++.+.+...+..+|++++|+|++.+......++..++ .+.|.+ +++||+|+++.++.. +..+++...
T Consensus 83 PG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred CCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 888 56777777778999999999999876554443333333 267876 589999998643321 222334433
Q ss_pred C-----CeEEEeeCccCC
Q 017100 176 G-----TKVIFSNGQLGM 188 (377)
Q Consensus 176 g-----~~vi~iSa~~g~ 188 (377)
+ ..++++|+.+|.
T Consensus 162 ~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 162 DFPGDDTPIIRGSALKAL 179 (396)
T ss_pred CCCccCCcEEEeeccccc
Confidence 3 467899998864
No 401
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.55 E-value=9.1e-05 Score=64.91 Aligned_cols=54 Identities=22% Similarity=0.136 Sum_probs=36.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
++++++|.+|||||||++++.+.. ...+.+.|+.+.. .+.++. .+.++||||..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD 59 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCCh
Confidence 368999999999999999997543 3334444544432 222332 46789999974
No 402
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.54 E-value=0.00019 Score=60.30 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCC-------CCCCcHHHHHHhc-CCCeEEEEEccCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTTHPLMDQWLG-NRKRILVLNREDM 159 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p-------~~~~~~~l~~~l~-~k~~ilVlNK~DL 159 (377)
..+.+||.... .+.........+.++.++.++|.... .......+..... +.|+++++||+|+
T Consensus 50 ~~~~~~D~~G~---------~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (161)
T TIGR00231 50 YKFNLLDTAGQ---------EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDL 120 (161)
T ss_pred EEEEEEECCCc---------ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccC
Confidence 56677886542 11222222334455555555554433 2111122333333 6799999999999
Q ss_pred CCHHHHHHHHHHHHHc-CCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~~~~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
............+... ...++.+|++.|.|+.++.+.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 121 RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 8754333333444333 35688999999999988876653
No 403
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.52 E-value=9.9e-05 Score=64.36 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=33.2
Q ss_pred eeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
|+++|.+|||||||+|++.+.. ......|-...+...+.. +-.+.+.||||--
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~-~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER-SLESVVPTTGFNSVAIPTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CcccccccCCcceEEEeeCCeEEEEEECCCCc
Confidence 7899999999999999999653 222212211111112222 3357899999964
No 404
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.52 E-value=0.00032 Score=59.55 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=74.3
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc-------CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~-------~k~~ilVlNK~D 158 (377)
....+.|||.+. ++++...+..+.+..+.++.|.|..+.++..+ ..+|+. ..|.++|.||.|
T Consensus 55 ~~VkLqIwDtAG---------qErFrtitstyyrgthgv~vVYDVTn~ESF~N--v~rWLeei~~ncdsv~~vLVGNK~d 123 (198)
T KOG0079|consen 55 DRVKLQIWDTAG---------QERFRTITSTYYRGTHGVIVVYDVTNGESFNN--VKRWLEEIRNNCDSVPKVLVGNKND 123 (198)
T ss_pred cEEEEEEeeccc---------HHHHHHHHHHHccCCceEEEEEECcchhhhHh--HHHHHHHHHhcCccccceecccCCC
Confidence 344566666544 48888888899999999999999998877765 344442 468899999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 159 L~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
+...... ..-..|..+.|+..+.+|++...+++.....|.
T Consensus 124 ~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 124 DPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred CccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 9765422 222234457789999999999988877654443
No 405
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.52 E-value=0.0011 Score=69.67 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=66.5
Q ss_pred EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---
Q 017100 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--- 164 (377)
Q Consensus 90 ~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~--- 164 (377)
+.+||+ ||| +.+.......+..+|++++|+|+.+.......+...++ .+.|.++++||+|+.+...
T Consensus 71 l~~iDT--------pG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 71 LLFIDT--------PGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHE 141 (590)
T ss_pred EEEEEC--------CCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhcc
Confidence 667775 444 44444445678999999999999875544333333333 3789999999999974210
Q ss_pred --------------H-HHHH-------HHHHHc---------------CCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 165 --------------R-NAWA-------TYFAKQ---------------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 165 --------------~-~~~~-------~~~~~~---------------g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
. ..+. ..+.+. ...++++||++|.|+++|...+..+.
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 0010 011211 14789999999999999987765443
No 406
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.52 E-value=0.00017 Score=63.21 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=37.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE---EEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~---~~~~~~~~---~~~l~DTPG~i 273 (377)
+.++|+++|.+|||||||+|++.+.. ..+.....|+.. ...+.++. .+.+.||+|--
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE 65 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc
Confidence 35789999999999999999999654 221333333322 22333332 35678999864
No 407
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.51 E-value=0.00029 Score=58.29 Aligned_cols=102 Identities=17% Similarity=0.036 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH-------HHhcCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-------QWLGNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~-------~~l~~k~~ilVlNK~DL 159 (377)
+.++.+||.. |+ ..........+..+|.++.|+|+..+......... ....+.|.++++||+|+
T Consensus 44 ~~~~~l~D~~--------g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 44 KVKLQIWDTA--------GQ-ERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEEEecC--------Ch-HHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 4566777753 32 22333335678999999999999876544332211 11137899999999999
Q ss_pred CCHHHHHHH---HHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMADRNAW---ATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~~~~~---~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
......... .......+..++.+|+..+.|+.++.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 115 PEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred ccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 866543332 12223345788999999999988876654
No 408
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.50 E-value=0.00035 Score=66.53 Aligned_cols=85 Identities=15% Similarity=0.206 Sum_probs=56.2
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcH---------HHHHH---hcCCCeEEEEEccCCCCHHHHHHHHHHHHHc-CCeE
Q 017100 113 ELKDQLKLMDVVIEVRDARIPLSTTHP---------LMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKV 179 (377)
Q Consensus 113 ~l~~~i~~aDlIL~V~Dar~p~~~~~~---------~l~~~---l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~-g~~v 179 (377)
++.+.|+||+.+++|+|...+.. +++ +++.+ +..+|.++|.||+|+.+.+. ....+..++. +..|
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~-~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~-~~l~~L~~~lq~~~V 344 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQL-RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK-NLLSSLAKRLQNPHV 344 (366)
T ss_pred HHHHHHHhhceEEEEEECCCccc-CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH-HHHHHHHHHcCCCcE
Confidence 45578999999999999987622 111 12222 23789999999999853322 1111222222 3469
Q ss_pred EEeeCccCCCchhhhhHHHH
Q 017100 180 IFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~ 199 (377)
+.+||+.++|+..|.+.+++
T Consensus 345 ~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 345 VPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EEeeeccccchHHHHHHHhh
Confidence 99999999998888776654
No 409
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.50 E-value=0.00077 Score=68.47 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=54.4
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCch
Q 017100 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (377)
Q Consensus 113 ~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (377)
...+.++.+|++++|+|+..+.+..+..+.... .++|+++|+||+|+... .... +....+..++.+|+++ .|++
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~~~---~~~~~~~~~~~vSak~-~gI~ 349 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SLEF---FVSSKVLNSSNLSAKQ-LKIK 349 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-chhh---hhhhcCCceEEEEEec-CCHH
Confidence 345678999999999999887654443233332 37899999999999754 2222 2234456778899987 4776
Q ss_pred hhhhHHH
Q 017100 192 KLSRLAK 198 (377)
Q Consensus 192 ~L~~~l~ 198 (377)
++.+.+.
T Consensus 350 ~~~~~L~ 356 (442)
T TIGR00450 350 ALVDLLT 356 (442)
T ss_pred HHHHHHH
Confidence 6554443
No 410
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.50 E-value=0.00016 Score=64.54 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=33.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE-EEEEEeC---CceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~~~~~~~---~~~~l~DTPG~i 273 (377)
+|+++|.+|||||||++++.+..- .....|....+ ...+.++ -.+.+.||+|--
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF-PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCccCCcceeeeEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999986432 11112221111 1122232 246789999973
No 411
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.49 E-value=0.00035 Score=75.32 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HHHHHHHHHH----HHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~~~~~~----~~~ 175 (377)
||| ..+.......+..+|++++|+|+.+.......+..... .+.|+++++||+|+... ......+..+ ...
T Consensus 345 PGh-e~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~ 423 (787)
T PRK05306 345 PGH-EAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEW 423 (787)
T ss_pred CCC-ccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHh
Confidence 777 34445555678899999999999875433332222222 37899999999999642 2222211111 112
Q ss_pred C--CeEEEeeCccCCCchhhhhHHHHh
Q 017100 176 G--TKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 176 g--~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
| ..++++|+++|.|+..|.+.+...
T Consensus 424 g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 424 GGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 2 578999999999999988776543
No 412
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.48 E-value=0.0001 Score=71.54 Aligned_cols=59 Identities=24% Similarity=0.350 Sum_probs=38.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceec----cCCCC---ceeEEEEE--Ee-C----CceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA----APRPG---VTRVLKWV--RF-G----KDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v----~~~pg---tT~~~~~~--~~-~----~~~~l~DTPG~i~ 274 (377)
-.++|++||-.|.||||+||.|++...... ...+. .|..+... .+ + -++.++|||||-.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 468999999999999999999997632211 11222 22222222 22 1 2478999999974
No 413
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.47 E-value=0.0002 Score=63.18 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=34.9
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE-EE-EEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~~-~~~~~~---~~~l~DTPG~i 273 (377)
++|.++|-+|||||||++++.... ......| |+.+ .. .+.++. .+.+.||+|--
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f~~~~~p-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FPSEYVP-TVFDNYAVTVMIGGEPYTLGLFDTAGQE 60 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCCCCC-ceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999998543 2122223 2222 11 223332 46799999984
No 414
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.46 E-value=0.00031 Score=67.54 Aligned_cols=90 Identities=18% Similarity=0.243 Sum_probs=62.7
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcH---------HHHHH---hcCCCeEEEEEccCC-CCHHHHHHHHHHHHHcC-Ce
Q 017100 113 ELKDQLKLMDVVIEVRDARIPLSTTHP---------LMDQW---LGNRKRILVLNREDM-ISMADRNAWATYFAKQG-TK 178 (377)
Q Consensus 113 ~l~~~i~~aDlIL~V~Dar~p~~~~~~---------~l~~~---l~~k~~ilVlNK~DL-~~~~~~~~~~~~~~~~g-~~ 178 (377)
++.+.|+||-+++.|+|...... +++ +++.+ +.+||.++|+||+|+ .+.++.+...+++.+.. ..
T Consensus 230 ~FLrHIERt~vL~hviD~s~~~~-~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 230 RFLRHIERTRVLLHVIDLSPIDG-RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE 308 (369)
T ss_pred HHHHHHHhhheeEEEEecCcccC-CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC
Confidence 45677999999999999864322 111 22222 348999999999994 56666677777776543 22
Q ss_pred -EEEeeCccCCCchhhhhHHHHhhhh
Q 017100 179 -VIFSNGQLGMGTMKLSRLAKALASD 203 (377)
Q Consensus 179 -vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (377)
.+++|+.++.|++.|...+.++...
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHHHH
Confidence 2239999999999987777666544
No 415
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.46 E-value=0.00031 Score=61.86 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=72.4
Q ss_pred cccchh--hhcccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc---
Q 017100 74 IEAYEE--ECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG--- 146 (377)
Q Consensus 74 ig~gk~--E~~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l~--- 146 (377)
||..++ |..+.+.-+.++|||++. ++++...=....+.+|..++++|..++.+..+.+ -.+++.
T Consensus 42 IgadFltKev~Vd~~~vtlQiWDTAG---------QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 42 IGADFLTKEVQVDDRSVTLQIWDTAG---------QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQAS 112 (210)
T ss_pred cchhheeeEEEEcCeEEEEEEEeccc---------HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcC
Confidence 555555 335555555666666554 4666554446689999999999998877665532 111221
Q ss_pred -----CCCeEEEEEccCCCC-------HHHHHHHHHHHHHcC-CeEEEeeCccCCCchhhhh
Q 017100 147 -----NRKRILVLNREDMIS-------MADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSR 195 (377)
Q Consensus 147 -----~k~~ilVlNK~DL~~-------~~~~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~ 195 (377)
.-|.+|+.||+|+-. .+..+.| -...| ++++.+|||...++.....
T Consensus 113 ~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~W---C~s~gnipyfEtSAK~~~NV~~AFe 171 (210)
T KOG0394|consen 113 PQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTW---CKSKGNIPYFETSAKEATNVDEAFE 171 (210)
T ss_pred CCCCCcccEEEEcccccCCCCccceeeHHHHHHH---HHhcCCceeEEecccccccHHHHHH
Confidence 348999999999954 2233444 44445 8889999999988876433
No 416
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.45 E-value=4.3e-05 Score=68.25 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=39.3
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCcee-----------------ccCCCCceeEEEEEE-----eCCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-----------------AAPRPGVTRVLKWVR-----FGKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~-----------------v~~~pgtT~~~~~~~-----~~~~~~l~DTPG~i 273 (377)
.++|+++|..++|||||+++|+...... .+...|.|.+..... -+..+.++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3579999999999999999998533110 111246666643333 34578999999974
No 417
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.45 E-value=0.00063 Score=69.19 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------CcHHHHHHh--cCCC-eEEEEEccCC--CC--HHH----H
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPLMDQWL--GNRK-RILVLNREDM--IS--MAD----R 165 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~-------~~~~l~~~l--~~k~-~ilVlNK~DL--~~--~~~----~ 165 (377)
||| +++.+.+...+..+|.+++|+|+..+..+ ...+...++ .+.| +++++||+|. ++ ++. .
T Consensus 93 PGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~ 171 (446)
T PTZ00141 93 PGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIK 171 (446)
T ss_pred CCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHH
Confidence 887 56777888889999999999999876421 111111122 2455 5789999994 32 222 2
Q ss_pred HHHHHHHHHcC-----CeEEEeeCccCCCchh
Q 017100 166 NAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (377)
Q Consensus 166 ~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (377)
.+..+++...| .+++++|+.+|.|+.+
T Consensus 172 ~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 172 KEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 23334444444 4688999999999854
No 418
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.44 E-value=0.00012 Score=74.99 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..++|+++|.+|+|||||+++|+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHh
Confidence 4589999999999999999999743
No 419
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.44 E-value=0.00015 Score=73.40 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=41.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCcee------------------------------ccCCCCceeEEEEEEe---CC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 262 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~------------------------------v~~~pgtT~~~~~~~~---~~ 262 (377)
..++|+++|.+|+|||||+++|+...... .+...|+|.+.....+ +.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 35789999999999999999997421110 1124589999766555 34
Q ss_pred ceEEEcCCcc
Q 017100 263 DLEFLDSPGI 272 (377)
Q Consensus 263 ~~~l~DTPG~ 272 (377)
.+.++||||.
T Consensus 86 ~i~iiDtpGh 95 (426)
T TIGR00483 86 EVTIVDCPGH 95 (426)
T ss_pred EEEEEECCCH
Confidence 6889999995
No 420
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.42 E-value=0.00017 Score=67.61 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=35.3
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||+|++.+.. .. .....|+.+. ..+.++. .+.++||+|.-
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~-f~-~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR-FE-EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC-CC-CCCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 68999999999999999998543 22 2223333332 2334433 35689999974
No 421
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.42 E-value=0.00052 Score=59.71 Aligned_cols=102 Identities=12% Similarity=-0.045 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL 159 (377)
...+.+||.... .+........+..+|.+++|+|..++.+..... +.+.. .+.|++++.||+|+
T Consensus 48 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~ 118 (168)
T cd04177 48 QCDLEILDTAGT---------EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADL 118 (168)
T ss_pred EEEEEEEeCCCc---------ccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhc
Confidence 356677886543 233444446688899999999987754332211 11111 25799999999999
Q ss_pred CCHHH--HHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHH
Q 017100 160 ISMAD--RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l 197 (377)
.+... ......+.++.+ ..++.+||++|.|++++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 119 EDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred cccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 65432 111122233445 678999999999988765443
No 422
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.42 E-value=0.00058 Score=64.81 Aligned_cols=89 Identities=22% Similarity=0.261 Sum_probs=63.3
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh---cCCCeEEEEEccCCCCHHH-----------------HHHHHHHH
Q 017100 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---GNRKRILVLNREDMISMAD-----------------RNAWATYF 172 (377)
Q Consensus 113 ~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l---~~k~~ilVlNK~DL~~~~~-----------------~~~~~~~~ 172 (377)
.-+..++++|+|+.++|+.++-...++.+-..+ .+.|-++|+||+|...... ..+|.+.|
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 445679999999999999987667777655444 3789999999999765431 12333333
Q ss_pred HHc--------------CCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 173 AKQ--------------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 173 ~~~--------------g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
... ...++++|+.+|.|+++|++.+-..+
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 211 13588999999999999988775443
No 423
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.41 E-value=0.00016 Score=63.01 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~------l~~~l~~k~~ilVlNK~DL~ 160 (377)
...+.+||..... .........+..+|+++.|+|..++.+..+.. +.....+.|+++|.||+|+.
T Consensus 47 ~~~~~i~Dt~G~~---------~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 47 QYLLGLYDTAGQE---------DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEEEEeCCCcc---------cccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 3455678865441 11111223578999999999988765533221 11122368999999999986
Q ss_pred CHHHH--------------HHHHHHHHHcC-CeEEEeeCccCCCchhhhhHH
Q 017100 161 SMADR--------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 161 ~~~~~--------------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l 197 (377)
+.... ..-..+.++.+ ..++.+|+++|.|++++.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 118 DDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHH
Confidence 43211 11112233445 368889999999998875543
No 424
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00015 Score=70.80 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=38.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCcee------ccCCCCceeEEEEEE--eC-C----ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------AAPRPGVTRVLKWVR--FG-K----DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~------v~~~pgtT~~~~~~~--~~-~----~~~l~DTPG~i~ 274 (377)
-.+++++||-.+-|||||||+|....... ....+--|..+...+ +. + ++.++|||||-.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 45789999999999999999998753111 122232344443322 21 1 467899999963
No 425
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.40 E-value=0.00012 Score=67.28 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=39.5
Q ss_pred eeeEeecCCCCcchhhhhhhcCCc------------------------------eeccCCCCceeEEEEEEe---CCceE
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLKWVRF---GKDLE 265 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~------------------------------~~v~~~pgtT~~~~~~~~---~~~~~ 265 (377)
+|+++|.+++|||||+.+|+.... ...+...|+|++.....+ +..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 389999999999999999963110 001124589998755444 55789
Q ss_pred EEcCCccc
Q 017100 266 FLDSPGII 273 (377)
Q Consensus 266 l~DTPG~i 273 (377)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999974
No 426
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.39 E-value=0.00072 Score=71.12 Aligned_cols=84 Identities=25% Similarity=0.290 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCHH---HHHHHHHHHHHc---
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMA---DRNAWATYFAKQ--- 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~~---~~~~~~~~~~~~--- 175 (377)
||| ..+..++...+..+|.+++|+|+..........+... . .+.|.++++||+|+.... ...+..+.+...
T Consensus 72 PGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~ 150 (594)
T TIGR01394 72 PGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGAD 150 (594)
T ss_pred CCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccc
Confidence 787 5566778888999999999999986533222222222 2 368999999999996432 233444444322
Q ss_pred ----CCeEEEeeCccCC
Q 017100 176 ----GTKVIFSNGQLGM 188 (377)
Q Consensus 176 ----g~~vi~iSa~~g~ 188 (377)
..+++++|++.|.
T Consensus 151 ~e~l~~pvl~~SA~~g~ 167 (594)
T TIGR01394 151 DEQLDFPIVYASGRAGW 167 (594)
T ss_pred cccccCcEEechhhcCc
Confidence 3568899999986
No 427
>PLN03127 Elongation factor Tu; Provisional
Probab=97.39 E-value=0.00096 Score=67.87 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCe-EEEEEccCCCCHHH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKR-ILVLNREDMISMAD 164 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~-ilVlNK~DL~~~~~ 164 (377)
||| +++.+.+..-+..+|++++|+|++.+......++..++. +.|. ++++||+|+++.++
T Consensus 132 PGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 132 PGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred CCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH
Confidence 888 456666666677899999999998776554444444432 6774 67899999986543
No 428
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.37 E-value=0.00019 Score=63.31 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=33.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~ 272 (377)
++++++|.+|||||||+.++.... ......| |+.+. ..+.++. .+.+.||||-
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-FPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQ 59 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCcCCC-cceeeeEEEEEECCEEEEEEEEECCCc
Confidence 579999999999999999988532 2111122 11111 1122322 4679999996
No 429
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.33 E-value=0.0012 Score=73.09 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=65.0
Q ss_pred EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---
Q 017100 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--- 164 (377)
Q Consensus 90 ~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~--- 164 (377)
+.+||+ ||| ..+..........+|++++|+|+.+.......+....+ .+.|+++|+||+|+.+...
T Consensus 528 i~fiDT--------PGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~ 598 (1049)
T PRK14845 528 LLFIDT--------PGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISE 598 (1049)
T ss_pred EEEEEC--------CCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcccccccc
Confidence 566775 555 33433334557789999999999875444333333332 2679999999999975211
Q ss_pred ---------------HHHH-------HHHHHHc---------------CCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 165 ---------------RNAW-------ATYFAKQ---------------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 165 ---------------~~~~-------~~~~~~~---------------g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
..+. ...+.+. ...++++||++|.|++.|...+..+.
T Consensus 599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0111 0011222 14678999999999999987775544
No 430
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.33 E-value=0.00023 Score=65.97 Aligned_cols=57 Identities=35% Similarity=0.511 Sum_probs=44.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EE-EeCCceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WV-RFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~-~~~~~~~l~DTPG~i~~ 275 (377)
-+|++||+|.||||||++.|++.- ..+...-|||.... .+ .-+..+.|.|-|||+..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiieg 119 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEG 119 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcc
Confidence 379999999999999999999743 46667778876642 22 23678999999999864
No 431
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.00048 Score=66.49 Aligned_cols=87 Identities=22% Similarity=0.390 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCC---CCcHHHHHHhcCCCeEEEEEccCCCCHH--HHH----HHHHHHHH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---TTHPLMDQWLGNRKRILVLNREDMISMA--DRN----AWATYFAK 174 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~---~~~~~l~~~l~~k~~ilVlNK~DL~~~~--~~~----~~~~~~~~ 174 (377)
||| +.+-+.|-.=..-||+.+.++|||.... .+...|..+++-+.+++.+||+||++-. .-+ .+..+..+
T Consensus 94 PGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~ 172 (431)
T COG2895 94 PGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQ 172 (431)
T ss_pred CcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHH
Confidence 888 5555666555788999999999997653 3455688888888999999999999633 222 33333445
Q ss_pred cC---CeEEEeeCccCCCch
Q 017100 175 QG---TKVIFSNGQLGMGTM 191 (377)
Q Consensus 175 ~g---~~vi~iSa~~g~gi~ 191 (377)
.| ..++++||..|.++-
T Consensus 173 L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 173 LGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cCCCcceEEechhccCCccc
Confidence 55 468899999987764
No 432
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.31 E-value=0.0014 Score=57.80 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C-CCeEEEEEccCCCCHHHHHHHHHHHHHc--CC
Q 017100 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ--GT 177 (377)
Q Consensus 103 ~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~-k~~ilVlNK~DL~~~~~~~~~~~~~~~~--g~ 177 (377)
+||| .++.-.+.-..+.++-.+.++|.+.+.......+..++. + .|+++..||.||-+..-.+...+++... ..
T Consensus 75 tPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~ 153 (187)
T COG2229 75 TPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV 153 (187)
T ss_pred CCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence 4887 667666667788899999999999888775555555543 3 7899999999997654444455555544 67
Q ss_pred eEEEeeCccCCCchhh
Q 017100 178 KVIFSNGQLGMGTMKL 193 (377)
Q Consensus 178 ~vi~iSa~~g~gi~~L 193 (377)
+++..++..+.|..+.
T Consensus 154 ~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 154 PVIEIDATEGEGARDQ 169 (187)
T ss_pred ceeeeecccchhHHHH
Confidence 8999999988776543
No 433
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.30 E-value=0.0013 Score=57.77 Aligned_cols=105 Identities=14% Similarity=0.013 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.. |+ .+...........+|.++.++|..+..+.... .+..++ .+.|.++|.||+|+
T Consensus 48 ~~~~~l~D~~--------g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 118 (180)
T cd04137 48 DYHLEIVDTA--------GQ-DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred EEEEEEEECC--------Ch-HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence 3456778753 32 23333333567889999999998764322111 111111 25699999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
...+. ...+..+.+..+..++.+|++++.|+.++.+.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (180)
T cd04137 119 HTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEE 161 (180)
T ss_pred hhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 74321 122333344456778999999999998876665543
No 434
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.30 E-value=0.00012 Score=66.77 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
+|+++|.+|+|||||+++|+..
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~ 23 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQ 23 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHh
Confidence 4899999999999999999854
No 435
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.28 E-value=0.00044 Score=61.54 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=35.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
++|+++|.+|||||||++++.... ..-...|.+..+. ..+.+++ .+.+.||+|--
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~-f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE-FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence 368999999999999999998643 2211223221222 2334433 46789999963
No 436
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.27 E-value=0.00044 Score=62.97 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=34.1
Q ss_pred CceeeeEeecCCCCcchhhhhhh-cCCceeccCCCCceeEEEEEEeCC---ceEEEcCCcc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~-~~~~~~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~ 272 (377)
..++|+++|.+|||||||+|++. +.-.....+..|.......+.... .+.+.||+|-
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~ 68 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc
Confidence 34789999999999999998654 321111222233332222222222 4678999996
No 437
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.26 E-value=0.00019 Score=72.12 Aligned_cols=55 Identities=29% Similarity=0.373 Sum_probs=38.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceec--------------c------------------CCCCceeEEEEEEe---CC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA--------------A------------------PRPGVTRVLKWVRF---GK 262 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v--------------~------------------~~pgtT~~~~~~~~---~~ 262 (377)
++|+++|.+|+|||||+++|+....... + -.-|+|.+.....+ +.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 3689999999999999999963221110 0 12367777654444 44
Q ss_pred ceEEEcCCcc
Q 017100 263 DLEFLDSPGI 272 (377)
Q Consensus 263 ~~~l~DTPG~ 272 (377)
.+.++||||.
T Consensus 81 ~~~liDtPGh 90 (406)
T TIGR02034 81 KFIVADTPGH 90 (406)
T ss_pred EEEEEeCCCH
Confidence 6899999995
No 438
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.23 E-value=0.00054 Score=63.86 Aligned_cols=72 Identities=31% Similarity=0.467 Sum_probs=0.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe--------------C----------------------
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------G---------------------- 261 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------~---------------------- 261 (377)
+++++||-+++||||++|+|.+......+ .-.+|+....+.+ +
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~-~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~ 105 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTG 105 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccC-CCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcC
Q ss_pred -------------------CceEEEcCCccccCCCCcHHHHHHHHHhc
Q 017100 262 -------------------KDLEFLDSPGIIPMRISDQAAAIKLAICD 290 (377)
Q Consensus 262 -------------------~~~~l~DTPG~i~~~~~~~~~~~~l~~~~ 290 (377)
.++.|+||||+......++...+...+..
T Consensus 106 ~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~ 153 (240)
T smart00053 106 TNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKD 153 (240)
T ss_pred CCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHH
No 439
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.22 E-value=0.00036 Score=64.38 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
+|+++|..+.|||||+++|+...
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~ 24 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASA 24 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998543
No 440
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0017 Score=65.91 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHH-HhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcC----
Q 017100 104 PGHIAKTEKELKD-QLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQG---- 176 (377)
Q Consensus 104 PGh~~~~~k~l~~-~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g---- 176 (377)
|||.. ...|+. =.+-+|++++|+|+.+.......+-.... .+-|+++++||+|..+..- ......+.+.|
T Consensus 63 PGHeA--Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E 139 (509)
T COG0532 63 PGHEA--FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPE 139 (509)
T ss_pred CcHHH--HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHh
Confidence 89843 334442 26889999999999886655443322333 2789999999999974321 11112223333
Q ss_pred -----CeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 177 -----TKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 177 -----~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
..++++||++|.|+.+|...+.-++.
T Consensus 140 ~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 140 EWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred hcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 35778999999999999877655443
No 441
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.22 E-value=0.001 Score=57.71 Aligned_cols=98 Identities=16% Similarity=0.026 Sum_probs=62.1
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~l-----~~k~~ilVlNK~D 158 (377)
....+.+||...+.. ......+|.+++|+|..++.+..+. . +..+. .+.|+++|.||.|
T Consensus 45 ~~~~l~i~D~~g~~~--------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~D 110 (158)
T cd04103 45 QSHLLLIRDEGGAPD--------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDA 110 (158)
T ss_pred EEEEEEEEECCCCCc--------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHH
Confidence 345678899776632 1235679999999999887665542 1 12221 2468999999999
Q ss_pred CCC--HHH-HHHHHHHH-HHc-CCeEEEeeCccCCCchhhhhHH
Q 017100 159 MIS--MAD-RNAWATYF-AKQ-GTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 159 L~~--~~~-~~~~~~~~-~~~-g~~vi~iSa~~g~gi~~L~~~l 197 (377)
|.. ... .....+.+ ++. +..++.+||++|.|++++.+.+
T Consensus 111 l~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 111 ISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred hhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 842 211 11222222 233 3678899999999998875543
No 442
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0021 Score=63.86 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=69.8
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc---HHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHH----c
Q 017100 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK----Q 175 (377)
Q Consensus 103 ~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~---~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~----~ 175 (377)
-||| .+..+.+-.-+.-.|..++|+|+.+...... ..+.+++..+..++|+||+|.+++...+...+.... .
T Consensus 57 vpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~ 135 (447)
T COG3276 57 VPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLA 135 (447)
T ss_pred CCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccc
Confidence 3788 4455555566778999999999965554433 334445556667999999999987654443333221 1
Q ss_pred CCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 176 GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
..+++.+|++.|.|+.+|++.+.++..
T Consensus 136 ~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 136 NAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccccccccccCCCHHHHHHHHHHhhh
Confidence 245688999999999999999988874
No 443
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.21 E-value=0.00084 Score=70.65 Aligned_cols=80 Identities=21% Similarity=0.119 Sum_probs=55.1
Q ss_pred hhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHHHHHH-HHHHHHHcCCeEEEeeCccCCCchhhhh
Q 017100 119 KLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (377)
Q Consensus 119 ~~aDlIL~V~Dar~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (377)
+.+|+|+.|+|+.+.. ++.. ..+.. .++|+++|+||+|+.++..... ..+.-+..|.+++++|+++|.|++++.+
T Consensus 71 ~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 71 EKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 4799999999997632 2222 22222 3789999999999975432221 1122234578899999999999999887
Q ss_pred HHHHh
Q 017100 196 LAKAL 200 (377)
Q Consensus 196 ~l~~l 200 (377)
.+.+.
T Consensus 149 ~i~~~ 153 (591)
T TIGR00437 149 AIRKA 153 (591)
T ss_pred HHHHH
Confidence 76543
No 444
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.21 E-value=0.0011 Score=71.79 Aligned_cols=81 Identities=22% Similarity=0.110 Sum_probs=57.4
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHH-HHh-cCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCccCCCchhhhh
Q 017100 119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (377)
Q Consensus 119 ~~aDlIL~V~Dar~p~~~~~~~l~-~~l-~~k~~ilVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (377)
+.+|+++.|+|+.+.. ++..+. ++. .++|+++++||+|+.++.......+.+ +..|.+++++|+++|.|++++.+
T Consensus 84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 5899999999997643 232222 222 378999999999997554322222223 45688999999999999999888
Q ss_pred HHHHhh
Q 017100 196 LAKALA 201 (377)
Q Consensus 196 ~l~~l~ 201 (377)
.+.+..
T Consensus 162 ~I~~~~ 167 (772)
T PRK09554 162 AIDRHQ 167 (772)
T ss_pred HHHHhh
Confidence 776653
No 445
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.002 Score=65.48 Aligned_cols=97 Identities=20% Similarity=0.140 Sum_probs=65.3
Q ss_pred CchHHHHHHHHHHH-HhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHHc----
Q 017100 103 YPGHIAKTEKELKD-QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ---- 175 (377)
Q Consensus 103 ~PGh~~~~~k~l~~-~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~~~~~~~~~---- 175 (377)
-|||++ ...|+. =..-+|+|++|+.+.+.....-.+-.+..+ +.|+++.+||+|..... .++....+..+
T Consensus 208 TPGHaA--F~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~ 284 (683)
T KOG1145|consen 208 TPGHAA--FSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVV 284 (683)
T ss_pred CCcHHH--HHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccH
Confidence 399964 445553 367799999999988876554444333333 78999999999965322 22222223333
Q ss_pred ---C--CeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 176 ---G--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 176 ---g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
| .+++.+|+++|.|++.|.+.+--++.
T Consensus 285 E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 285 EDLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 3 46899999999999999877655443
No 446
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.19 E-value=0.0007 Score=58.50 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=66.6
Q ss_pred CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc---------CCC-eEEEEEccCCCCHHHHH-HHHH
Q 017100 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---------NRK-RILVLNREDMISMADRN-AWAT 170 (377)
Q Consensus 102 w~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~---------~k~-~ilVlNK~DL~~~~~~~-~~~~ 170 (377)
|....++++....+.+.+++=-++.|+|..+..+... ++.|+. .++ .++|..|+||.+..++. +-.+
T Consensus 63 wdtagqerfrsitksyyrnsvgvllvyditnr~sfeh--v~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaE 140 (213)
T KOG0091|consen 63 WDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEH--VENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAE 140 (213)
T ss_pred eeccchHHHHHHHHHHhhcccceEEEEeccchhhHHH--HHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHH
Confidence 4444459999999999999999999999987766554 333332 233 46889999998765432 2223
Q ss_pred HH-HHcCCeEEEeeCccCCCchhhhhH
Q 017100 171 YF-AKQGTKVIFSNGQLGMGTMKLSRL 196 (377)
Q Consensus 171 ~~-~~~g~~vi~iSa~~g~gi~~L~~~ 196 (377)
+| ...|..++.+|+++|.++++-...
T Consensus 141 klAa~hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 141 KLAASHGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred HHHHhcCceEEEecccCCCcHHHHHHH
Confidence 33 467889999999999998764443
No 447
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.18 E-value=0.00094 Score=60.81 Aligned_cols=101 Identities=12% Similarity=-0.020 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMIS 161 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~~k~~ilVlNK~DL~~ 161 (377)
.+.+.+||...+ .+........+..+|.++.|+|..+..+.... .+.....+.|++++.||+|+..
T Consensus 57 ~i~i~~~Dt~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 57 PICFNVWDTAGQ---------EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEEEEEECCCc---------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 456677876432 23333334567789999999998765543221 1111224678899999999975
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhH
Q 017100 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRL 196 (377)
Q Consensus 162 ~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~ 196 (377)
.........+.+..+..++.+|+++|.|+++....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 162 (215)
T PTZ00132 128 RQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLW 162 (215)
T ss_pred ccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 43222333445556678899999999998765443
No 448
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.18 E-value=0.00033 Score=60.26 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=66.5
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-CCCeEEEEEccC
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNRED 158 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l~-~k~~ilVlNK~D 158 (377)
...+.+.+||...+ .+........+.++|.++.++|..++.+..+.. +..... ..|+++|.||.|
T Consensus 45 ~~~~~l~i~D~~g~---------~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D 115 (162)
T PF00071_consen 45 GKPVNLEIWDTSGQ---------ERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSD 115 (162)
T ss_dssp TEEEEEEEEEETTS---------GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTT
T ss_pred cccccccccccccc---------ccccccccccccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence 45566778885433 222333346689999999999987765443321 112222 478999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhh
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (377)
+..... .+...++.++.+..++.+|++.+.|+.++..
T Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 116 LSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp GGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHH
T ss_pred ccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHH
Confidence 876322 1223344556678899999999999887643
No 449
>PLN03126 Elongation factor Tu; Provisional
Probab=97.18 E-value=0.0023 Score=65.58 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHH-H----HHHHHHHHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADR-N----AWATYFAKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~-~----~~~~~~~~~ 175 (377)
||| +++.+.+..-+..+|+++.|+|+..+......+....+ .+.| .++++||+|+++.++. + +..+++.+.
T Consensus 152 PGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 152 PGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 887 55777777778899999999999976544333333332 2567 6678999999875432 1 233344443
Q ss_pred C-----CeEEEeeCccCC
Q 017100 176 G-----TKVIFSNGQLGM 188 (377)
Q Consensus 176 g-----~~vi~iSa~~g~ 188 (377)
| ..++++|+.+|.
T Consensus 231 g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 231 EFPGDDIPIISGSALLAL 248 (478)
T ss_pred CCCcCcceEEEEEccccc
Confidence 3 467888987763
No 450
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.18 E-value=0.0007 Score=60.04 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=34.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeCC---ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~l~DTPG~ 272 (377)
.+|+++|.+|||||||++++.+.. ....-.|....+. ..+.++. .+.+.||+|-
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~ 59 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YPETYVPTVFENYTASFEIDEQRIELSLWDTSGS 59 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCc
Confidence 479999999999999999998643 2222222211111 1223332 3678999996
No 451
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.18 E-value=0.00062 Score=58.49 Aligned_cols=54 Identities=37% Similarity=0.530 Sum_probs=34.2
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCC--CceeEEEEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
||+++|.++||||||++++.+.. ..-...| |.......+.... .+.+.||+|--
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999998653 2211122 2222222233322 47899999963
No 452
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.15 E-value=0.0014 Score=60.37 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 160 (377)
||| ..+..+....+..+|.++.|+|+..+.......+.+.. .+.|+++++||+|+.
T Consensus 81 PG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 676 45777888889999999999999877654443333332 367999999999986
No 453
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0019 Score=61.68 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=67.1
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----CCcHHHHHHhcCCCeEEEEEccCCCCHHHHHH----HHHHHHH
Q 017100 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----TTHPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFAK 174 (377)
Q Consensus 103 ~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~----~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~----~~~~~~~ 174 (377)
-||| +-++..|..=..-.|-.|+|++|..|.- .......+.+.-+.++++=||+||++++...+ ..++.+.
T Consensus 93 aPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkG 171 (415)
T COG5257 93 APGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKG 171 (415)
T ss_pred CCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcc
Confidence 3888 5566666555566788899999876432 22222223455788999999999999875332 2222221
Q ss_pred ---cCCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 175 ---QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 175 ---~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
.+.+++++||.++.+++.|.+.+.+..+
T Consensus 172 t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 172 TVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred cccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 2368999999999999999888776543
No 454
>PRK10218 GTP-binding protein; Provisional
Probab=97.14 E-value=0.0019 Score=68.00 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCH--
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISM-- 162 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~-- 162 (377)
+..+.+||. ||| ..+...+...+..+|.+++|+|+.+........+... . .+.|.++++||+|+...
T Consensus 67 ~~~inliDT--------PG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~ 137 (607)
T PRK10218 67 DYRINIVDT--------PGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARP 137 (607)
T ss_pred CEEEEEEEC--------CCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCch
Confidence 344556664 554 4455666778999999999999987543333222222 2 37899999999998632
Q ss_pred -HHHHHHHHHHHH-------cCCeEEEeeCccCCC
Q 017100 163 -ADRNAWATYFAK-------QGTKVIFSNGQLGMG 189 (377)
Q Consensus 163 -~~~~~~~~~~~~-------~g~~vi~iSa~~g~g 189 (377)
+...+..+.|.. ...+++++|+.+|.+
T Consensus 138 ~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 138 DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 233444444432 235689999999974
No 455
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.13 E-value=0.00013 Score=64.54 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=64.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC--CCcHHHHHHhc-----CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~--~~~~~l~~~l~-----~k~~ilVlNK~D 158 (377)
.+..+.+||-..+.. .......++..+|.|++|+|+.++.. ....++..++. +.|+++++||.|
T Consensus 56 ~~~~~~~~d~gG~~~---------~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D 126 (175)
T PF00025_consen 56 KGYSLTIWDLGGQES---------FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQD 126 (175)
T ss_dssp TTEEEEEEEESSSGG---------GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTT
T ss_pred CcEEEEEEecccccc---------ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccc
Confidence 455677777554421 22223356789999999999886532 11223444433 689999999999
Q ss_pred CCCHHHHHHHHHHHH------HcCCeEEEeeCccCCCchhhhhHH
Q 017100 159 MISMADRNAWATYFA------KQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 159 L~~~~~~~~~~~~~~------~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
+.+........+.+. .....++.+|+.+|.|+.+..+.|
T Consensus 127 ~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 127 LPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp STTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred ccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence 865332233333221 123567889999999987765554
No 456
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.12 E-value=0.00035 Score=70.29 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+++|.+|+|||||+++|++.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCe
Confidence 478999999999999999999853
No 457
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.11 E-value=0.00068 Score=60.33 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=33.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeC---CceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~---~~~~l~DTPG~i~ 274 (377)
+|+++|.+|||||||+|+|....- .-...+.+.... ..+.+. -.+.+.||||...
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEE 61 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEECCEEEEEEEEECCCChh
Confidence 689999999999999999984321 111122111111 112222 2367889999743
No 458
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.10 E-value=0.0028 Score=66.60 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=63.1
Q ss_pred EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---
Q 017100 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--- 164 (377)
Q Consensus 90 ~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~--- 164 (377)
+.+||+ ||| +.+.......+..+|++++|+|+.+.......+...++ .+.|+++++||+|+.+...
T Consensus 73 i~~iDT--------PG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~ 143 (586)
T PRK04004 73 LLFIDT--------PGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTE 143 (586)
T ss_pred EEEEEC--------CCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhc
Confidence 456775 555 44555555667889999999999875433322222232 3789999999999863211
Q ss_pred ---------------HH-------HHHHHHHHcC---------------CeEEEeeCccCCCchhhhhHHH
Q 017100 165 ---------------RN-------AWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 165 ---------------~~-------~~~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.. +...++.+.| ..++++|+.+|.|+.+|...+.
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 00 0111222222 4578999999999988776554
No 459
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.08 E-value=0.00099 Score=55.62 Aligned_cols=98 Identities=10% Similarity=0.073 Sum_probs=68.3
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-CCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l~-~k~~ilVlNK~DL 159 (377)
..+.+.+||++. ++++......+.+.+|.+|++.|..+.-+..+-+ |.++.+ ...+.++.||+|+
T Consensus 45 ~kvklqiwdtag---------qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~ 115 (192)
T KOG0083|consen 45 KKVKLQIWDTAG---------QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDL 115 (192)
T ss_pred cEEEEEEeeccc---------hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhcccccc
Confidence 445566776554 4888888889999999999999988766555422 222222 3467789999999
Q ss_pred CCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchh
Q 017100 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMK 192 (377)
Q Consensus 160 ~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~ 192 (377)
+++..+ +.-.+.-+..|+++..+|+++|.+++.
T Consensus 116 a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 116 AHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDL 150 (192)
T ss_pred chhhccccchHHHHHHHHCCCceeccccccccHhH
Confidence 875432 122223345688999999999988864
No 460
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.07 E-value=0.00077 Score=60.52 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=36.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|..+||||||++++.... ......|..+.+. ..+.++. .+.+.||+|--
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGS-TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4789999999999999999998632 2211122233333 2233333 46789999974
No 461
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.06 E-value=0.00068 Score=61.53 Aligned_cols=54 Identities=30% Similarity=0.369 Sum_probs=34.9
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.|.++|.+|||||||++++.... ....-.|.++.+. ..+.+++ .+.+.||+|--
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 58999999999999999998533 2222223223332 2334432 46789999963
No 462
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.06 E-value=0.0013 Score=58.47 Aligned_cols=104 Identities=16% Similarity=0.091 Sum_probs=61.8
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H-HH---HHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L-MD---QWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~-l~---~~l~~k~~ilVlNK~DL 159 (377)
...++.+||...+. .........+..+|.++.++|..++.+..+. . +. ....+.|+++|.||+|+
T Consensus 47 ~~~~l~i~Dt~g~~---------~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl 117 (187)
T cd04129 47 KPVQLALWDTAGQE---------EYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDL 117 (187)
T ss_pred EEEEEEEEECCCCh---------hccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhh
Confidence 34567788865431 1111111246889999999998765543221 1 11 11236799999999998
Q ss_pred CCHHH------------HHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMAD------------RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~------------~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.+... ...-..+.++.+ ..++.+|+++|.|++++.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 169 (187)
T cd04129 118 RQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAAT 169 (187)
T ss_pred hhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHH
Confidence 54210 011112223445 3788999999999988866554
No 463
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.05 E-value=0.0009 Score=61.71 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=34.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeCC---ceEEEcCCcc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~l~DTPG~ 272 (377)
.+|++||.+|||||||++++.+.. ....-.|.+.-+. ..+.++. .+.+.||+|-
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~ 59 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-YPGSYVPTVFENYTASFEIDKRRIELNMWDTSGS 59 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCccCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence 479999999999999999998643 2222223221111 1223332 3678999996
No 464
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.04 E-value=0.0013 Score=68.26 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCceeeeEeecCCCCcchhhhhhh--cCCceeccCCC-------------------CceeEEEEEEe---CCceEEEcCC
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLL--KRRMCPAAPRP-------------------GVTRVLKWVRF---GKDLEFLDSP 270 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~--~~~~~~v~~~p-------------------gtT~~~~~~~~---~~~~~l~DTP 270 (377)
.+..+|+++|.+|+|||||+++|+ +......+... |.|.......+ +..+.++|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Q ss_pred ccccCCCCcHHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCCChhhhhhhhccCCCCCcHHHHHHHHHHHhc
Q 017100 271 GIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLF 346 (377)
Q Consensus 271 G~i~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~a~~~~ 346 (377)
|.......-....-..-.+--+-+.+-........++..+... ....+...+|+|....+..+.++.+...++
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~~PiivviNKiD~~~~~~~~ll~~i~~~l~ 161 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR---DTPIFTFMNKLDRDIRDPLELLDEVENELK 161 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc---CCCEEEEEECccccCCCHHHHHHHHHHHhC
No 465
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.03 E-value=0.00054 Score=72.11 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=38.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCCcee--------cc------CCCCceeEEEEEEe-----C---CceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCP--------AA------PRPGVTRVLKWVRF-----G---KDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~--------v~------~~pgtT~~~~~~~~-----~---~~~~l~DTPG~i~ 274 (377)
+++++|.+|+|||||+++|+...... +. ...|+|.+.+.+.+ + -.+.++||||...
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 68999999999999999998532111 11 12477777544332 2 2468999999964
No 466
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.00097 Score=67.68 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=65.8
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HHHHHh-cCCCeEEEEEccCCCC--HHHH-HHHHHHHHHcCC
Q 017100 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-GNRKRILVLNREDMIS--MADR-NAWATYFAKQGT 177 (377)
Q Consensus 103 ~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~l~~~l-~~k~~ilVlNK~DL~~--~~~~-~~~~~~~~~~g~ 177 (377)
-||| ..+.-+..+.+.-||-+|+|+||.......-. .+...+ .+..+|.|+||+|+-. ++.. ....+.|.....
T Consensus 132 TPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 132 TPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA 210 (650)
T ss_pred CCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc
Confidence 4898 45667777889999999999999865432211 122222 3788999999999963 3333 333344544557
Q ss_pred eEEEeeCccCCCchhhhhHHH
Q 017100 178 KVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~l~ 198 (377)
+++++||+.|.|+.++.+.+-
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII 231 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAII 231 (650)
T ss_pred ceEEEEeccCccHHHHHHHHH
Confidence 899999999999988765543
No 467
>PRK10218 GTP-binding protein; Provisional
Probab=97.02 E-value=0.00076 Score=70.99 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=39.9
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceec---------------cCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v---------------~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
.+|+++|..++|||||+++|+....... +...|+|.......+ +..+.++||||...
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 3699999999999999999985322111 123577766544333 34688999999754
No 468
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.00099 Score=59.93 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=82.5
Q ss_pred cCCCCCCCccccchhhh--cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH
Q 017100 65 GNSNNSNGSIEAYEEEC--DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD 142 (377)
Q Consensus 65 ~~~~~~~~~ig~gk~E~--~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~ 142 (377)
--.++++-=||-.+... .++..-+...|||++.+ ++.......+.+.+--.|+|.|.....+.. .+.
T Consensus 38 EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ---------ERyrAitSaYYrgAvGAllVYDITr~~Tfe--nv~ 106 (222)
T KOG0087|consen 38 EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ---------ERYRAITSAYYRGAVGALLVYDITRRQTFE--NVE 106 (222)
T ss_pred ccCcccccceeEEEEeeceeecCcEEEEeeecccch---------hhhccccchhhcccceeEEEEechhHHHHH--HHH
Confidence 33455565667666632 66666777888888776 777766668899999999999997665555 366
Q ss_pred HHhc--------CCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhh
Q 017100 143 QWLG--------NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 143 ~~l~--------~k~~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L 193 (377)
+|+. +..+++|.||+||-.... .+.-..+-++.+..++.+||..+.+++..
T Consensus 107 rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 107 RWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred HHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 6653 567899999999965321 12223344566788899999998887654
No 469
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.01 E-value=0.0048 Score=56.00 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=56.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-------------------
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------------------- 145 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l------------------- 145 (377)
...+.+||...+ .+........++.+|.++.|+|..++.+..+.. +....
T Consensus 53 ~~~l~IwDtaG~---------e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~ 123 (202)
T cd04102 53 TFFVELWDVGGS---------ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSE 123 (202)
T ss_pred EEEEEEEecCCc---------hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 345678886554 344444446789999999999998876554321 11111
Q ss_pred ----cCCCeEEEEEccCCCCHHH------HHHHHHHHHHcCCeEEEeeCccC
Q 017100 146 ----GNRKRILVLNREDMISMAD------RNAWATYFAKQGTKVIFSNGQLG 187 (377)
Q Consensus 146 ----~~k~~ilVlNK~DL~~~~~------~~~~~~~~~~~g~~vi~iSa~~g 187 (377)
.+.|+++|.||+||.+... ...+...-.+.|.+.++.+++..
T Consensus 124 ~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 124 QFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred ccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCc
Confidence 1358999999999976531 11111222345667777777654
No 470
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.00 E-value=0.0045 Score=57.12 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=49.7
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeE-EEEEccCCCCHHH-HHHHHHH----HH-H--cCCeEE
Q 017100 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMAD-RNAWATY----FA-K--QGTKVI 180 (377)
Q Consensus 112 k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~i-lVlNK~DL~~~~~-~~~~~~~----~~-~--~g~~vi 180 (377)
..+.+.++.+|++++|+|+..+.......+..++. +.|.+ +|+||+|+..+.. .....+. +. + .+.+++
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~ 174 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLF 174 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 44455679999999999998766655555555443 56755 5999999984332 2222222 21 1 246899
Q ss_pred EeeCccC
Q 017100 181 FSNGQLG 187 (377)
Q Consensus 181 ~iSa~~g 187 (377)
++|+++.
T Consensus 175 ~iSa~~~ 181 (225)
T cd01882 175 YLSGIVH 181 (225)
T ss_pred EEeeccC
Confidence 9998876
No 471
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.99 E-value=0.0058 Score=55.63 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 160 (377)
||| ..+.......+..+|.++.|+|+..........+.+.. .++|.++|+||+|++
T Consensus 79 pG~-~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGH-VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCC-cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 454 34556667789999999999999876544333322222 368999999999986
No 472
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.98 E-value=0.0011 Score=60.14 Aligned_cols=55 Identities=33% Similarity=0.387 Sum_probs=35.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCC--CceeEEEEEEeC------C--ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFG------K--DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~------~--~~~l~DTPG~i 273 (377)
++|.++|-++||||||++++.+.. ......| |.+.....+.++ . .+.+.||+|--
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~-f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ-VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 368999999999999999999643 2212222 322222233332 2 36799999973
No 473
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.98 E-value=0.0007 Score=59.82 Aligned_cols=55 Identities=25% Similarity=0.510 Sum_probs=37.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCcc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~ 272 (377)
+..+|.++|.+|+||||++|.|.......+.+.-|.. ...+.. +..+.+.|.+|=
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~--~~~i~~~~~~~~~~d~gG~ 68 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN--IEEIKYKGYSLTIWDLGGQ 68 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE--EEEEEETTEEEEEEEESSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccc--cceeeeCcEEEEEEecccc
Confidence 4578999999999999999999865433333322322 233333 346889999985
No 474
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.98 E-value=0.0035 Score=65.05 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred eeeEeecCCCCcchhhhhhhc---------------CCceeccCCC------CceeEEEEEEe---CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLK---------------RRMCPAAPRP------GVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~---------------~~~~~v~~~p------gtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
+|+++|.+|+|||||.++|+. .....+++.. |.|.......+ +..+.++||||...
T Consensus 12 ni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~d 91 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHED 91 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchh
Q ss_pred CCCCcHHHHHHHHHhcc---ccccCcChhHHHHHHHHHHHcCCCCChhhhhhhhccCCCCCcHHHHHHHHHHHhc
Q 017100 275 MRISDQAAAIKLAICDD---IGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLF 346 (377)
Q Consensus 275 ~~~~~~~~~~~l~~~~~---i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~a~~~~ 346 (377)
. ..+..-.+..++. +-+.+.........++...... +...+.-.+|+|....+..+.++.+...++
T Consensus 92 f---~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 92 F---SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR---DTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred h---HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc---CCCEEEEEECCcccccCHHHHHHHHHHHhC
No 475
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.91 E-value=0.0065 Score=59.31 Aligned_cols=105 Identities=10% Similarity=-0.011 Sum_probs=65.0
Q ss_pred cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-hcCCCeEEEEEccCCC
Q 017100 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-LGNRKRILVLNREDMI 160 (377)
Q Consensus 82 ~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-l~~k~~ilVlNK~DL~ 160 (377)
.....+.|+++.++..-. | .+ ..+.+.+|+++.|.+ |.+..+.+-... .....-++|+||+|+.
T Consensus 143 ~~~~~g~d~viieT~Gv~-q-----s~------~~i~~~aD~vlvv~~---p~~gd~iq~~k~gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 143 LCEAAGYDVILVETVGVG-Q-----SE------TAVAGMVDFFLLLQL---PGAGDELQGIKKGIMELADLIVINKADGD 207 (332)
T ss_pred HHhccCCCEEEEECCCCc-c-----ch------hHHHHhCCEEEEEec---CCchHHHHHHHhhhhhhhheEEeehhccc
Confidence 445578999999987553 2 11 115788999999975 222222221111 1122348999999998
Q ss_pred CHHHHHHHHHHHH----H-------cCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 161 SMADRNAWATYFA----K-------QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 161 ~~~~~~~~~~~~~----~-------~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+..........++ . ...+++++|++++.|+++|.+.+.+..
T Consensus 208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 7543332222222 1 114789999999999999988776653
No 476
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.005 Score=53.06 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=68.2
Q ss_pred CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh---------cCCCeEEEEEccCCCCHHHHHH--HHH
Q 017100 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---------GNRKRILVLNREDMISMADRNA--WAT 170 (377)
Q Consensus 102 w~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l---------~~k~~ilVlNK~DL~~~~~~~~--~~~ 170 (377)
|....++++....-...+.+.-.|+|||.....+..+ +..|+ .+-.++++.||+||.+..++.+ -..
T Consensus 72 WDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLn--vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~ 149 (219)
T KOG0081|consen 72 WDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLN--VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAA 149 (219)
T ss_pred eccccHHHHHHHHHHHHHhhccceEEEeccchHHHHH--HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHH
Confidence 4444458898888888999999999999876655544 23332 2556889999999987665432 233
Q ss_pred HHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 171 YFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
...+.|.+++.+|+-+|.++++-.+.+
T Consensus 150 La~kyglPYfETSA~tg~Nv~kave~L 176 (219)
T KOG0081|consen 150 LADKYGLPYFETSACTGTNVEKAVELL 176 (219)
T ss_pred HHHHhCCCeeeeccccCcCHHHHHHHH
Confidence 445778999999999999887654443
No 477
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.88 E-value=0.00086 Score=60.72 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
+|+++|..++|||||+.+|++.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999754
No 478
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.87 E-value=0.0012 Score=67.31 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=40.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCce------------------------------eccCCCCceeEEEEEEe---CC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---GK 262 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~------------------------------~v~~~pgtT~~~~~~~~---~~ 262 (377)
..++|+++|..++|||||+.+|+..... ..+-..|+|.+.....+ +.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 3578999999999999999998731100 01123478888765554 34
Q ss_pred ceEEEcCCccc
Q 017100 263 DLEFLDSPGII 273 (377)
Q Consensus 263 ~~~l~DTPG~i 273 (377)
.+.++||||-.
T Consensus 86 ~i~lIDtPGh~ 96 (446)
T PTZ00141 86 YFTIIDAPGHR 96 (446)
T ss_pred EEEEEECCChH
Confidence 68899999954
No 479
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.86 E-value=0.0035 Score=58.13 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=36.3
Q ss_pred CCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 148 RKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 148 k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.|.++|+||+|+++.++...|.. ...++++|+++|.|+++|.+.+-+
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDLLAR-----QPNSVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred eeEEEEEECccCCCHHHHHHHhc-----CCCEEEEcCCCCCCHHHHHHHHHH
Confidence 48899999999998876554321 346889999999999988776544
No 480
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.85 E-value=0.0045 Score=58.80 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 161 (377)
|||. .+...+...+..+|++++|+|+..........+.+.+ .++|+++++||+|+..
T Consensus 72 PG~~-df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 72 PGHV-DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred CCcH-HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 7764 4556677889999999999999876544333443333 3789999999999974
No 481
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0048 Score=60.98 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=82.0
Q ss_pred cccchhhHHhhcCCee-eE--EeecCCCCCCCccccchh-hh---cccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHH
Q 017100 44 SLSSSAPIIQTVGGKQ-SS--WHGGNSNNSNGSIEAYEE-EC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKD 116 (377)
Q Consensus 44 ~~~~~~~~~~~~g~~~-~~--~~~~~~~~~~~~ig~gk~-E~---~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~ 116 (377)
+++++...|+.+|=+. .+ +--+.+..+.- |+- +. -.++....+=|+| -||| +-+.+.+-.
T Consensus 38 tmeK~~~ea~~~gK~sf~fawvlD~tkeERer----GvTi~~~~~~fet~k~~~tIiD--------aPGH-rdFvknmIt 104 (428)
T COG5256 38 TMEKLEKEAKELGKESFKFAWVLDKTKEERER----GVTIDVAHSKFETDKYNFTIID--------APGH-RDFVKNMIT 104 (428)
T ss_pred HHHHHHHHHHhcCCCceEEEEEecCChhHHhc----ceEEEEEEEEeecCCceEEEee--------CCch-HHHHHHhhc
Confidence 7888999999898875 22 11111110000 000 11 1122222333444 3886 777777777
Q ss_pred HhhhcCeEEEEEecCCCCCC----------CcHHHHHHhcCCCeEEEEEccCCCCHHH--HH----HHHHHHHHcC----
Q 017100 117 QLKLMDVVIEVRDARIPLST----------THPLMDQWLGNRKRILVLNREDMISMAD--RN----AWATYFAKQG---- 176 (377)
Q Consensus 117 ~i~~aDlIL~V~Dar~p~~~----------~~~~l~~~l~~k~~ilVlNK~DL~~~~~--~~----~~~~~~~~~g---- 176 (377)
-..++|+.++|+|++.+..+ ....+.+.++-..+|+++||+|+++-++ .+ +...+.+..|
T Consensus 105 GasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~ 184 (428)
T COG5256 105 GASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPK 184 (428)
T ss_pred chhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 78999999999999987321 1223556666778999999999986221 11 1222233444
Q ss_pred -CeEEEeeCccCCCchhh
Q 017100 177 -TKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 177 -~~vi~iSa~~g~gi~~L 193 (377)
..++++|+..|.++.+.
T Consensus 185 ~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 185 DVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CCeEEecccccCCccccc
Confidence 45789999999887653
No 482
>PRK13351 elongation factor G; Reviewed
Probab=96.83 E-value=0.0015 Score=70.04 Aligned_cols=125 Identities=18% Similarity=0.125 Sum_probs=0.0
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccC-----------------CCCceeEEEEEEe---CCceEEEcCCccccCCCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP-----------------RPGVTRVLKWVRF---GKDLEFLDSPGIIPMRIS 278 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~-----------------~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~~~ 278 (377)
+|+++|..|+|||||+++|+......... .-|.|.......+ +..+.++||||.....-.
T Consensus 10 ni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~ 89 (687)
T PRK13351 10 NIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGE 89 (687)
T ss_pred EEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHH
Q ss_pred cHHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCCChhhhhhhhccCCCCCcHHHHHHHHHHHhc
Q 017100 279 DQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLF 346 (377)
Q Consensus 279 ~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~a~~~~ 346 (377)
-....-..-.+--+-+...........++..+... +...+...+|+|....+....++.+..+++
T Consensus 90 ~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~---~~p~iiviNK~D~~~~~~~~~~~~i~~~l~ 154 (687)
T PRK13351 90 VERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY---GIPRLIFINKMDRVGADLFKVLEDIEERFG 154 (687)
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc---CCCEEEEEECCCCCCCCHHHHHHHHHHHHC
No 483
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.80 E-value=0.0017 Score=57.62 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=34.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
++|.++|.++||||||++++.... ......| |.-+. ..+.++. .+.+.||+|--
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~-Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~ 60 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIP-TVFDNFSANVSVDGNTVNLGLWDTAGQE 60 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCC-cceeeeEEEEEECCEEEEEEEEECCCCc
Confidence 479999999999999999998543 2222222 11111 1122332 46799999974
No 484
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.80 E-value=0.0013 Score=69.30 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=37.9
Q ss_pred eeeEeecCCCCcchhhhhhhcCCce-----ec----------cCCCCceeEEEEEE---eCCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMC-----PA----------APRPGVTRVLKWVR---FGKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~-----~v----------~~~pgtT~~~~~~~---~~~~~~l~DTPG~i~ 274 (377)
+|+++|..++|||||+++|+..... .+ +..-|+|....... -+..+.++||||...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH
Confidence 5899999999999999999853211 11 11236666543222 245788999999853
No 485
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0063 Score=58.72 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=57.9
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhcCCCeEEEEEccCCCCHHHHHHHHHH--------H
Q 017100 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLGNRKRILVLNREDMISMADRNAWATY--------F 172 (377)
Q Consensus 103 ~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~--------~ 172 (377)
.|||. .+.+.+---..-.|+.+.|+|+.........+ +...+..+++++|+||+|+.++.++..-.+. +
T Consensus 77 CPGHa-sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 77 CPGHA-SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred CCCcH-HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 58983 34444333345567888888887544332221 2222335789999999999987554332222 2
Q ss_pred HHcC----CeEEEeeCccC----CCchhhhhHHHH
Q 017100 173 AKQG----TKVIFSNGQLG----MGTMKLSRLAKA 199 (377)
Q Consensus 173 ~~~g----~~vi~iSa~~g----~gi~~L~~~l~~ 199 (377)
+..+ .+++.+|+..| .++.+|++.+++
T Consensus 156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s 190 (522)
T KOG0461|consen 156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALES 190 (522)
T ss_pred HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHH
Confidence 2222 57899999988 666666666543
No 486
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.76 E-value=0.0016 Score=60.40 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=34.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeC---CceEEEcCCcc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGI 272 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~---~~~~l~DTPG~ 272 (377)
.++|++||-+|||||||++++.... ......|.+.-+. ..+.++ -.+.|.||+|-
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~-F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~ 71 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFENYTAGLETEEQRVELSLWDTSGS 71 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC-CCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCc
Confidence 4689999999999999999998542 2211122111111 112222 24679999995
No 487
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.73 E-value=0.003 Score=56.26 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=34.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeCC---ceEEEcCCcc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~l~DTPG~ 272 (377)
.++|+++|-++||||||++++.... ....-.|-+.-+. ..+.++. .+.+.||+|-
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~-f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC-FPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC-CCCccCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 4689999999999999999998543 2111122111111 1223333 3679999996
No 488
>PTZ00416 elongation factor 2; Provisional
Probab=96.71 E-value=0.0015 Score=71.44 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=25.4
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCce
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT 252 (377)
.+|+++|..++|||||+++|+....+......|.|
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~ 54 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDA 54 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCce
Confidence 37999999999999999999865433333333433
No 489
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.0014 Score=68.40 Aligned_cols=83 Identities=20% Similarity=0.064 Sum_probs=58.5
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHH-HHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 119 KLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWA-TYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 119 ~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~-~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
++.|+|+-|+||.+-.......++-+..++|.++++|++|.+.+...+--. +.-+..|.++++++|++|.|++++++.+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 567999999999864332222233333489999999999988764322111 2234678999999999999999887776
Q ss_pred HHhh
Q 017100 198 KALA 201 (377)
Q Consensus 198 ~~l~ 201 (377)
.++.
T Consensus 160 ~~~~ 163 (653)
T COG0370 160 IELA 163 (653)
T ss_pred HHhc
Confidence 5543
No 490
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.70 E-value=0.0027 Score=55.05 Aligned_cols=52 Identities=29% Similarity=0.248 Sum_probs=32.4
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
+|+++|.+|||||||++++.... . ....+ +|-+ ...+.+++ .+.+.||+|--
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~-f-~~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS-Y-VQLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC-C-CCCCC-CCccceEEEEEECCEEEEEEEEECCCCC
Confidence 68999999999999999876432 1 11111 1111 12233332 36789999984
No 491
>PLN00023 GTP-binding protein; Provisional
Probab=96.67 E-value=0.0029 Score=61.37 Aligned_cols=56 Identities=32% Similarity=0.433 Sum_probs=36.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeEEEEEEeCC----------------ceEEEcCCcc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK----------------DLEFLDSPGI 272 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~----------------~~~l~DTPG~ 272 (377)
.++|+++|..+||||||++++.+..-. .....-|.+.....+.++. .+.|.||+|=
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 478999999999999999999864311 1122234443333333321 2679999996
No 492
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.64 E-value=0.0032 Score=56.30 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=34.3
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|-+|||||||++++.... ..-...|-..-+. ..+.++. .+.+.||+|--
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA-FPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CCcCCCCceEeeeEEEEEECCEEEEEEEEECCCch
Confidence 3689999999999999999998532 2111112111111 1122332 36789999963
No 493
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0035 Score=54.83 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=65.2
Q ss_pred CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHH-----HhcCCCeEEEEEccCCCCHHHHHHHHHHHHH
Q 017100 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQ-----WLGNRKRILVLNREDMISMADRNAWATYFAK 174 (377)
Q Consensus 102 w~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~-----~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~ 174 (377)
|.-|.++.......++...++.|++||||.++..... ..++. .+.+.|+++.+||-|+.+.-+..+....+..
T Consensus 74 wdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~ 153 (197)
T KOG0076|consen 74 WDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL 153 (197)
T ss_pred EEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh
Confidence 7777767666666689999999999999987433221 12222 2347899999999999877655555555541
Q ss_pred ------cCCeEEEeeCccCCCchhh
Q 017100 175 ------QGTKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 175 ------~g~~vi~iSa~~g~gi~~L 193 (377)
....+.++|+..|.|+++=
T Consensus 154 ~e~~~~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 154 AELIPRRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred hhhcCCccCccccchhhhcccHHHH
Confidence 1246788999999998754
No 494
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.56 E-value=0.0015 Score=70.35 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=37.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCce---------eccC------CCCceeEEEEEE----e---CCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMC---------PAAP------RPGVTRVLKWVR----F---GKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~---------~v~~------~pgtT~~~~~~~----~---~~~~~l~DTPG~i~ 274 (377)
.+|+++|..++|||||+++|+..... ...+ ..|+|.+..... . +..+.++||||...
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 47999999999999999999742110 0011 145665532211 1 34588999999964
No 495
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.53 E-value=0.0011 Score=59.14 Aligned_cols=92 Identities=24% Similarity=0.352 Sum_probs=46.4
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceec--cCCCCceeEEEEEEeCCceEEEcCCccccCCCCcHHHHH-HHHHhccc---
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAI-KLAICDDI--- 292 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v--~~~pgtT~~~~~~~~~~~~~l~DTPG~i~~~~~~~~~~~-~l~~~~~i--- 292 (377)
.|.|+|.+|+||++|+..|.......+ +-.|..+... .-..+..+.|+|+||--+-+. .....+ .+.-+.+|
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~-~~~~~~~~~~~~k~IIfv 82 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV-NNSKGKKLRLVDIPGHPRLRS-KLLDELKYLSNAKGIIFV 82 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG-SSTCGTCECEEEETT-HCCCH-HHHHHHHHHGGEEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe-ecCCCCEEEEEECCCcHHHHH-HHHHhhhchhhCCEEEEE
Confidence 689999999999999999996532111 1111111000 001145789999999854321 111111 11112221
Q ss_pred cccCc---ChhHHHHHHHHHHHc
Q 017100 293 GERSY---DVADVAAILVQMLAR 312 (377)
Q Consensus 293 ~~~~~---~~~~~~~~ll~~l~~ 312 (377)
-|.+. +..++|.+|.++|..
T Consensus 83 vDSs~~~~~~~~~Ae~Ly~iL~~ 105 (181)
T PF09439_consen 83 VDSSTDQKELRDVAEYLYDILSD 105 (181)
T ss_dssp EETTTHHHHHHHHHHHHHHHHHH
T ss_pred EeCccchhhHHHHHHHHHHHHHh
Confidence 12221 235678888887653
No 496
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0032 Score=63.31 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--------------CCCeEEEEEccCCCCHHHHHHH--HHHHH
Q 017100 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------------NRKRILVLNREDMISMADRNAW--ATYFA 173 (377)
Q Consensus 110 ~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--------------~k~~ilVlNK~DL~~~~~~~~~--~~~~~ 173 (377)
..+..++.+.++|+|++|+|+-...++.+..+++.+. .++.+++.||+|+.++-....| ..|..
T Consensus 338 gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~ 417 (531)
T KOG1191|consen 338 GIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS 417 (531)
T ss_pred hHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccc
Confidence 4555667899999999999996666666666555442 2688999999999877222222 11222
Q ss_pred H----cCCeEEEeeCccCCCchhhhhHHH
Q 017100 174 K----QGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 174 ~----~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
. ....+.++|+++++|+.+|...+-
T Consensus 418 ~~~~~~~~i~~~vs~~tkeg~~~L~~all 446 (531)
T KOG1191|consen 418 AEGRSVFPIVVEVSCTTKEGCERLSTALL 446 (531)
T ss_pred cccCcccceEEEeeechhhhHHHHHHHHH
Confidence 2 123445688888888877765543
No 497
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.51 E-value=0.023 Score=53.87 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~ 162 (377)
||| ..+.......++.+|.++.|+|+..........+.+.. .+.|+++++||+|+...
T Consensus 79 PG~-~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 79 PGH-EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred CCc-hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 565 44556667788999999999999875433222333332 37899999999998644
No 498
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.49 E-value=0.0095 Score=55.46 Aligned_cols=57 Identities=25% Similarity=0.283 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 161 (377)
||| ..+.......+..+|.++.|+|+..........+.+.+ .++|+++++||+|+..
T Consensus 72 PG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 72 PGH-MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred CCc-cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 555 34556677789999999999999876543323333333 3789999999999874
No 499
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.47 E-value=0.0038 Score=68.52 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRM 242 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~ 242 (377)
.+|+++|..++|||||+++|+....
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g 44 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999985443
No 500
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.012 Score=49.97 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=63.4
Q ss_pred CCchHHHHHHHHHHHHhhhcCeEEEEEecCC--CCCCCcHHHHHHhc-----CCCeEEEEEccCCCCHHHHHHHH-----
Q 017100 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWA----- 169 (377)
Q Consensus 102 w~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~--p~~~~~~~l~~~l~-----~k~~ilVlNK~DL~~~~~~~~~~----- 169 (377)
|.-|.+-...--.+.+.+++|.||+|+|..+ ..+....++..++. +..++++.||.|....-...+..
T Consensus 67 wdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l 146 (182)
T KOG0072|consen 67 WDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGL 146 (182)
T ss_pred eEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhCh
Confidence 4333333334445568999999999999754 33444444544443 56788999999986443222211
Q ss_pred HHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
..++..-..++..||.+|.|++...+.+.+
T Consensus 147 ~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~ 176 (182)
T KOG0072|consen 147 QKLKDRIWQIVKTSAVKGEGLDPAMDWLQR 176 (182)
T ss_pred HHHhhheeEEEeeccccccCCcHHHHHHHH
Confidence 233444477889999999999988776654
Done!