Query 017100
Match_columns 377
No_of_seqs 447 out of 3945
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 1.3E-55 4.4E-60 419.3 27.2 273 100-375 3-281 (282)
2 3cnl_A YLQF, putative uncharac 100.0 2.6E-48 8.9E-53 365.2 10.0 242 101-376 2-250 (262)
3 2qtf_A Protein HFLX, GTP-bindi 100.0 1.9E-33 6.6E-38 275.7 -3.7 221 39-285 7-249 (364)
4 3ec1_A YQEH GTPase; atnos1, at 99.9 1.5E-24 5E-29 213.1 13.3 155 107-275 58-225 (369)
5 3h2y_A GTPase family protein; 99.9 4.2E-24 1.4E-28 209.7 12.1 154 108-275 57-224 (368)
6 1mky_A Probable GTP-binding pr 99.8 4E-21 1.4E-25 192.8 12.2 187 87-274 48-240 (439)
7 1t9h_A YLOQ, probable GTPase E 99.8 4E-21 1.4E-25 183.6 7.1 141 117-277 83-239 (307)
8 2hjg_A GTP-binding protein ENG 99.8 9.6E-21 3.3E-25 189.9 6.8 181 87-275 50-236 (436)
9 4dcu_A GTP-binding protein ENG 99.8 1.4E-19 4.8E-24 182.4 9.9 182 86-275 69-256 (456)
10 2yv5_A YJEQ protein; hydrolase 99.8 1.5E-18 5.2E-23 165.7 12.6 138 117-274 76-228 (302)
11 2rcn_A Probable GTPase ENGC; Y 99.8 1.2E-18 4E-23 169.6 10.0 142 115-276 125-282 (358)
12 1u0l_A Probable GTPase ENGC; p 99.7 2.7E-18 9.2E-23 163.9 5.5 142 116-277 80-236 (301)
13 2e87_A Hypothetical protein PH 99.6 1.1E-16 3.8E-21 156.2 -3.0 157 121-278 58-230 (357)
14 4a9a_A Ribosome-interacting GT 99.4 1.3E-13 4.5E-18 135.0 4.9 58 217-275 72-132 (376)
15 3gee_A MNME, tRNA modification 99.0 6.5E-11 2.2E-15 119.5 3.1 59 216-274 232-293 (476)
16 1xzp_A Probable tRNA modificat 99.0 3.8E-11 1.3E-15 121.4 1.4 57 217-273 243-302 (482)
17 1mky_A Probable GTP-binding pr 99.0 1.2E-10 4E-15 116.6 2.7 56 219-274 3-61 (439)
18 3lxw_A GTPase IMAP family memb 99.0 2.3E-10 7.8E-15 105.7 4.3 60 216-275 20-83 (247)
19 1wf3_A GTP-binding protein; GT 99.0 2.9E-10 9.8E-15 108.2 4.6 58 218-275 8-68 (301)
20 3i8s_A Ferrous iron transport 99.0 4.5E-10 1.5E-14 105.3 5.7 59 217-276 3-64 (274)
21 1svi_A GTP-binding protein YSX 99.0 4.7E-10 1.6E-14 98.3 5.2 61 216-276 22-83 (195)
22 3pqc_A Probable GTP-binding pr 98.9 1.7E-09 5.8E-14 94.3 8.1 61 216-276 22-82 (195)
23 4dhe_A Probable GTP-binding pr 98.9 4.5E-10 1.5E-14 100.8 4.1 60 216-275 28-92 (223)
24 2gj8_A MNME, tRNA modification 98.9 7E-10 2.4E-14 96.1 4.8 58 217-274 4-64 (172)
25 3geh_A MNME, tRNA modification 98.9 1.2E-10 4.1E-15 117.2 -0.3 59 216-274 223-284 (462)
26 3iev_A GTP-binding protein ERA 98.9 6.6E-10 2.3E-14 105.9 4.8 60 217-276 10-73 (308)
27 3iby_A Ferrous iron transport 98.9 1.1E-09 3.9E-14 101.6 6.2 57 219-276 3-62 (256)
28 2hjg_A GTP-binding protein ENG 98.9 3.9E-10 1.3E-14 112.6 2.8 57 218-274 4-63 (436)
29 1h65_A Chloroplast outer envel 98.9 2E-09 7E-14 100.3 6.1 60 216-275 38-100 (270)
30 3lxx_A GTPase IMAP family memb 98.9 1.8E-09 6.2E-14 98.6 5.6 63 216-279 28-95 (239)
31 3def_A T7I23.11 protein; chlor 98.8 2.3E-09 7.7E-14 99.7 6.1 61 216-276 35-98 (262)
32 1ega_A Protein (GTP-binding pr 98.8 1.5E-09 5.2E-14 103.1 4.5 56 218-273 9-67 (301)
33 3a1s_A Iron(II) transport prot 98.8 3.1E-09 1.1E-13 98.7 6.6 60 217-277 5-67 (258)
34 3b1v_A Ferrous iron uptake tra 98.8 3.3E-09 1.1E-13 99.4 6.6 59 217-276 3-63 (272)
35 1f5n_A Interferon-induced guan 98.8 2.3E-09 7.9E-14 110.5 5.4 58 216-275 37-104 (592)
36 4dcu_A GTP-binding protein ENG 98.8 2E-09 6.8E-14 108.1 4.8 58 217-274 23-83 (456)
37 1jal_A YCHF protein; nucleotid 98.8 9.6E-10 3.3E-14 107.0 2.2 57 218-275 3-79 (363)
38 1wxq_A GTP-binding protein; st 98.8 1.1E-09 3.6E-14 108.2 2.6 56 218-274 1-83 (397)
39 2xtp_A GTPase IMAP family memb 98.8 2.9E-09 1E-13 98.4 5.2 61 216-276 21-85 (260)
40 3t5d_A Septin-7; GTP-binding p 98.8 3.4E-09 1.2E-13 99.1 5.5 58 216-273 7-76 (274)
41 3k53_A Ferrous iron transport 98.8 5.3E-09 1.8E-13 97.6 6.7 61 217-278 3-66 (271)
42 2cxx_A Probable GTP-binding pr 98.8 3.1E-09 1.1E-13 92.4 4.6 56 218-275 2-57 (190)
43 1pui_A ENGB, probable GTP-bind 98.8 3.6E-09 1.2E-13 93.9 4.5 59 216-274 25-84 (210)
44 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 5.8E-09 2E-13 102.6 5.9 61 215-275 18-98 (392)
45 1x3s_A RAS-related protein RAB 98.8 5.8E-09 2E-13 91.0 5.3 125 86-232 62-194 (195)
46 2ohf_A Protein OLA1, GTP-bindi 98.8 3E-09 1E-13 104.5 3.8 60 215-275 20-99 (396)
47 2wji_A Ferrous iron transport 98.7 8.5E-09 2.9E-13 88.3 5.7 57 218-275 4-63 (165)
48 2wjg_A FEOB, ferrous iron tran 98.7 2.3E-08 7.9E-13 86.8 7.7 58 217-275 7-67 (188)
49 2nzj_A GTP-binding protein REM 98.7 1.3E-08 4.3E-13 87.1 5.8 58 217-274 4-64 (175)
50 2dyk_A GTP-binding protein; GT 98.7 5.3E-09 1.8E-13 88.2 3.4 57 218-274 2-61 (161)
51 2www_A Methylmalonic aciduria 98.7 3.2E-09 1.1E-13 103.0 2.3 24 216-239 73-96 (349)
52 2aka_B Dynamin-1; fusion prote 98.7 3.7E-09 1.3E-13 99.3 2.3 35 216-250 25-64 (299)
53 2qu8_A Putative nucleolar GTP- 98.7 1E-08 3.4E-13 92.8 5.0 58 216-274 28-88 (228)
54 1lnz_A SPO0B-associated GTP-bi 98.7 4.8E-09 1.6E-13 101.5 1.6 56 218-274 159-218 (342)
55 2x2e_A Dynamin-1; nitration, h 98.6 1.9E-08 6.6E-13 97.5 5.8 34 217-250 31-69 (353)
56 4dhe_A Probable GTP-binding pr 98.6 1.8E-07 6.1E-12 83.6 11.4 117 86-202 77-210 (223)
57 1jwy_B Dynamin A GTPase domain 98.6 2.6E-08 8.8E-13 94.5 6.1 27 216-242 23-49 (315)
58 1z0j_A RAB-22, RAS-related pro 98.6 3.1E-08 1.1E-12 84.1 5.5 58 216-273 5-66 (170)
59 3q72_A GTP-binding protein RAD 98.6 3.1E-08 1E-12 84.0 4.6 58 217-274 2-61 (166)
60 2dby_A GTP-binding protein; GD 98.6 1E-08 3.5E-13 100.1 1.7 57 218-275 2-82 (368)
61 2qpt_A EH domain-containing pr 98.5 5.3E-08 1.8E-12 100.0 5.5 40 216-255 64-105 (550)
62 3pqc_A Probable GTP-binding pr 98.5 9.1E-07 3.1E-11 76.7 12.7 114 87-200 67-191 (195)
63 3qq5_A Small GTP-binding prote 98.5 4.5E-08 1.5E-12 97.2 3.9 60 216-275 33-96 (423)
64 1ek0_A Protein (GTP-binding pr 98.5 8.8E-08 3E-12 81.1 5.2 57 217-273 3-63 (170)
65 2j69_A Bacterial dynamin-like 98.5 1E-07 3.5E-12 100.5 6.7 36 216-251 68-103 (695)
66 3cb4_D GTP-binding protein LEP 98.5 1.5E-07 5E-12 97.5 7.7 138 88-240 71-216 (599)
67 1kao_A RAP2A; GTP-binding prot 98.5 1.3E-07 4.6E-12 79.6 6.0 55 217-273 3-62 (167)
68 2lkc_A Translation initiation 98.5 3.4E-08 1.2E-12 84.8 2.3 57 216-273 7-66 (178)
69 2ged_A SR-beta, signal recogni 98.5 6.5E-08 2.2E-12 84.4 4.0 56 216-275 47-104 (193)
70 2fg5_A RAB-22B, RAS-related pr 98.5 1.1E-07 3.7E-12 83.3 5.2 58 216-273 22-83 (192)
71 3r7w_A Gtpase1, GTP-binding pr 98.5 6.6E-08 2.3E-12 91.9 4.0 57 217-273 3-63 (307)
72 1r2q_A RAS-related protein RAB 98.5 1.3E-07 4.3E-12 80.1 5.2 58 216-273 5-66 (170)
73 2g6b_A RAS-related protein RAB 98.5 1.5E-07 5.3E-12 80.7 5.6 58 216-273 9-71 (180)
74 1upt_A ARL1, ADP-ribosylation 98.5 1.2E-07 4.1E-12 80.6 4.8 56 216-273 6-62 (171)
75 3tw8_B RAS-related protein RAB 98.4 1.4E-07 4.7E-12 80.9 5.0 57 216-273 8-69 (181)
76 1svi_A GTP-binding protein YSX 98.4 1.3E-06 4.3E-11 76.1 11.3 112 88-199 69-191 (195)
77 3gj0_A GTP-binding nuclear pro 98.4 1.4E-07 4.9E-12 84.4 5.2 59 216-274 14-76 (221)
78 3iev_A GTP-binding protein ERA 98.4 8.1E-07 2.8E-11 84.5 10.6 115 87-202 58-181 (308)
79 3sjy_A Translation initiation 98.4 5.7E-07 1.9E-11 88.7 9.8 104 88-200 75-189 (403)
80 1z0f_A RAB14, member RAS oncog 98.4 1.9E-07 6.6E-12 79.8 5.6 58 216-273 14-75 (179)
81 1wms_A RAB-9, RAB9, RAS-relate 98.4 2.2E-07 7.4E-12 79.6 5.7 57 216-273 6-67 (177)
82 1fzq_A ADP-ribosylation factor 98.4 1.3E-07 4.4E-12 82.2 4.2 57 216-273 15-71 (181)
83 4dsu_A GTPase KRAS, isoform 2B 98.4 2.4E-07 8.3E-12 80.0 5.9 56 217-274 4-64 (189)
84 2h17_A ADP-ribosylation factor 98.4 1.8E-07 6.2E-12 81.0 4.8 57 216-273 20-76 (181)
85 1moz_A ARL1, ADP-ribosylation 98.4 1.7E-07 5.8E-12 80.8 4.5 57 216-274 17-74 (183)
86 2oil_A CATX-8, RAS-related pro 98.4 2.8E-07 9.5E-12 80.4 5.9 59 216-274 24-86 (193)
87 1ksh_A ARF-like protein 2; sma 98.4 1.9E-07 6.5E-12 80.9 4.8 56 216-273 17-73 (186)
88 1z2a_A RAS-related protein RAB 98.4 3.2E-07 1.1E-11 77.6 5.9 58 216-274 4-66 (168)
89 1u8z_A RAS-related protein RAL 98.4 3.4E-07 1.2E-11 77.2 6.0 55 217-273 4-63 (168)
90 1zj6_A ADP-ribosylation factor 98.4 2.3E-07 7.8E-12 80.7 5.0 58 216-274 15-72 (187)
91 4bas_A ADP-ribosylation factor 98.4 1.7E-07 5.7E-12 82.0 4.2 109 84-201 59-187 (199)
92 2gf9_A RAS-related protein RAB 98.4 3.8E-07 1.3E-11 79.3 6.4 58 216-273 21-82 (189)
93 3t1o_A Gliding protein MGLA; G 98.4 2.5E-07 8.5E-12 80.5 5.2 106 86-200 72-189 (198)
94 2x77_A ADP-ribosylation factor 98.4 2.3E-07 7.8E-12 80.7 4.9 56 216-273 21-77 (189)
95 1z08_A RAS-related protein RAB 98.4 3.2E-07 1.1E-11 77.9 5.7 57 216-273 5-66 (170)
96 2p5s_A RAS and EF-hand domain 98.4 2.3E-07 7.9E-12 81.7 5.0 58 216-273 27-88 (199)
97 1g16_A RAS-related protein SEC 98.4 2.5E-07 8.6E-12 78.4 5.1 57 217-274 3-64 (170)
98 2efe_B Small GTP-binding prote 98.4 2.9E-07 1E-11 79.0 5.4 58 216-273 11-72 (181)
99 3t5g_A GTP-binding protein RHE 98.4 5.1E-08 1.8E-12 84.1 0.6 119 87-232 53-180 (181)
100 1r8s_A ADP-ribosylation factor 98.4 5.2E-07 1.8E-11 76.1 6.7 105 86-199 42-158 (164)
101 3zvr_A Dynamin-1; hydrolase, D 98.4 4.3E-07 1.5E-11 96.0 7.3 62 183-246 19-80 (772)
102 2y8e_A RAB-protein 6, GH09086P 98.4 3.7E-07 1.3E-11 78.0 5.7 56 217-273 14-74 (179)
103 1z06_A RAS-related protein RAB 98.4 4E-07 1.4E-11 79.3 6.0 57 216-273 19-80 (189)
104 1c1y_A RAS-related protein RAP 98.4 3.7E-07 1.3E-11 77.1 5.6 56 217-274 3-63 (167)
105 1u8z_A RAS-related protein RAL 98.3 6.7E-07 2.3E-11 75.3 6.9 104 87-199 51-163 (168)
106 2h57_A ADP-ribosylation factor 98.3 4E-07 1.4E-11 79.3 5.6 56 216-273 20-78 (190)
107 2erx_A GTP-binding protein DI- 98.3 2.3E-07 8E-12 78.6 3.9 55 217-273 3-62 (172)
108 2bme_A RAB4A, RAS-related prot 98.3 4.4E-07 1.5E-11 78.3 5.8 57 216-273 9-70 (186)
109 1zbd_A Rabphilin-3A; G protein 98.3 4.7E-07 1.6E-11 79.6 6.0 58 216-273 7-68 (203)
110 1x3s_A RAS-related protein RAB 98.3 4.2E-07 1.4E-11 79.0 5.5 58 217-274 15-76 (195)
111 2h57_A ADP-ribosylation factor 98.3 2E-07 6.8E-12 81.3 3.4 105 87-200 66-184 (190)
112 2il1_A RAB12; G-protein, GDP, 98.3 3.9E-07 1.3E-11 79.8 5.2 57 216-273 25-86 (192)
113 3t5g_A GTP-binding protein RHE 98.3 4.9E-07 1.7E-11 77.8 5.8 56 217-274 6-66 (181)
114 3cph_A RAS-related protein SEC 98.3 5E-07 1.7E-11 79.9 6.0 58 216-274 19-81 (213)
115 2ce2_X GTPase HRAS; signaling 98.3 6E-07 2E-11 75.3 6.2 55 217-273 3-62 (166)
116 2fn4_A P23, RAS-related protei 98.3 3.9E-07 1.3E-11 78.0 5.1 57 216-274 8-69 (181)
117 4djt_A GTP-binding nuclear pro 98.3 3.8E-07 1.3E-11 81.2 5.2 60 216-275 10-74 (218)
118 2fh5_B SR-beta, signal recogni 98.3 3.8E-07 1.3E-11 81.0 5.1 55 217-273 7-65 (214)
119 3tkl_A RAS-related protein RAB 98.3 4.8E-07 1.6E-11 78.8 5.5 57 216-273 15-76 (196)
120 2g6b_A RAS-related protein RAB 98.3 5E-07 1.7E-11 77.4 5.6 105 87-200 59-171 (180)
121 3clv_A RAB5 protein, putative; 98.3 5E-07 1.7E-11 78.6 5.6 26 216-241 6-31 (208)
122 1zd9_A ADP-ribosylation factor 98.3 7.9E-07 2.7E-11 77.4 6.8 106 86-200 65-182 (188)
123 1vg8_A RAS-related protein RAB 98.3 4.9E-07 1.7E-11 79.5 5.5 57 216-273 7-68 (207)
124 1m2o_B GTP-binding protein SAR 98.3 4E-07 1.4E-11 79.7 4.9 56 217-274 23-79 (190)
125 2a5j_A RAS-related protein RAB 98.3 4.6E-07 1.6E-11 79.1 5.0 59 216-274 20-82 (191)
126 3bc1_A RAS-related protein RAB 98.3 8.7E-07 3E-11 76.6 6.8 106 87-201 69-183 (195)
127 2a9k_A RAS-related protein RAL 98.3 7E-07 2.4E-11 76.8 6.1 56 216-273 17-77 (187)
128 3j2k_7 ERF3, eukaryotic polype 98.3 3.9E-07 1.3E-11 91.0 4.8 58 216-273 16-106 (439)
129 4bas_A ADP-ribosylation factor 98.3 4.8E-07 1.6E-11 79.0 4.8 56 216-273 16-74 (199)
130 1udx_A The GTP-binding protein 98.3 3.1E-07 1.1E-11 90.9 4.1 56 218-274 158-217 (416)
131 2bov_A RAla, RAS-related prote 98.3 7.8E-07 2.7E-11 78.1 6.1 56 216-273 13-73 (206)
132 1zj6_A ADP-ribosylation factor 98.3 9.3E-07 3.2E-11 76.7 6.6 106 87-201 59-176 (187)
133 3con_A GTPase NRAS; structural 98.3 7.1E-07 2.4E-11 77.5 5.8 55 217-273 21-80 (190)
134 2dyk_A GTP-binding protein; GT 98.3 8.8E-07 3E-11 74.4 6.2 108 87-199 48-158 (161)
135 1ksh_A ARF-like protein 2; sma 98.3 5.3E-07 1.8E-11 78.1 4.8 105 87-200 61-177 (186)
136 1f6b_A SAR1; gtpases, N-termin 98.3 3.9E-07 1.3E-11 80.4 4.0 55 217-273 25-80 (198)
137 2hxs_A RAB-26, RAS-related pro 98.3 4.7E-07 1.6E-11 77.5 4.5 57 216-273 5-67 (178)
138 1upt_A ARL1, ADP-ribosylation 98.3 4E-07 1.4E-11 77.3 3.6 105 87-200 50-166 (171)
139 2bcg_Y Protein YP2, GTP-bindin 98.3 8.1E-07 2.8E-11 78.4 5.6 57 216-273 7-68 (206)
140 4gzl_A RAS-related C3 botulinu 98.3 7.8E-07 2.7E-11 78.8 5.5 56 216-273 29-89 (204)
141 2a9k_A RAS-related protein RAL 98.3 2.5E-06 8.4E-11 73.3 8.6 105 87-200 65-178 (187)
142 2f7s_A C25KG, RAS-related prot 98.3 8.8E-07 3E-11 78.8 5.8 103 87-200 83-196 (217)
143 1ky3_A GTP-binding protein YPT 98.3 5E-07 1.7E-11 77.4 4.0 57 216-273 7-69 (182)
144 3kkq_A RAS-related protein M-R 98.3 1.2E-06 3.9E-11 75.6 6.3 57 216-274 17-78 (183)
145 2o52_A RAS-related protein RAB 98.2 7.4E-07 2.5E-11 78.6 5.1 57 216-273 24-85 (200)
146 1z0f_A RAB14, member RAS oncog 98.2 9.1E-07 3.1E-11 75.5 5.4 105 86-199 62-174 (179)
147 2atv_A RERG, RAS-like estrogen 98.2 1.2E-06 4.2E-11 76.6 6.3 57 216-274 27-88 (196)
148 3bc1_A RAS-related protein RAB 98.2 9.1E-07 3.1E-11 76.5 5.4 57 216-273 10-81 (195)
149 2yc2_C IFT27, small RAB-relate 98.2 4.2E-07 1.4E-11 79.8 3.2 57 217-273 20-84 (208)
150 2cjw_A GTP-binding protein GEM 98.2 3.5E-07 1.2E-11 80.4 2.7 57 217-273 6-67 (192)
151 3oes_A GTPase rhebl1; small GT 98.2 7.9E-07 2.7E-11 78.3 4.9 56 216-273 23-83 (201)
152 2gf0_A GTP-binding protein DI- 98.2 1.4E-06 4.9E-11 75.9 6.5 57 216-274 7-68 (199)
153 2efe_B Small GTP-binding prote 98.2 9.1E-07 3.1E-11 75.9 5.2 105 87-200 60-172 (181)
154 2q3h_A RAS homolog gene family 98.2 8.8E-07 3E-11 77.7 5.2 57 216-274 19-80 (201)
155 1r8s_A ADP-ribosylation factor 98.2 7.6E-07 2.6E-11 75.1 4.6 54 218-273 1-55 (164)
156 1zd9_A ADP-ribosylation factor 98.2 8.4E-07 2.9E-11 77.3 4.9 56 216-273 21-78 (188)
157 3izq_1 HBS1P, elongation facto 98.2 2.9E-07 1E-11 95.6 2.2 58 216-273 166-256 (611)
158 2iwr_A Centaurin gamma 1; ANK 98.2 9.7E-07 3.3E-11 75.7 5.1 58 216-274 6-66 (178)
159 3l0i_B RAS-related protein RAB 98.2 4.9E-07 1.7E-11 79.5 3.2 57 216-273 32-93 (199)
160 2j0v_A RAC-like GTP-binding pr 98.2 7.2E-07 2.5E-11 79.1 4.3 106 86-200 55-177 (212)
161 2ew1_A RAS-related protein RAB 98.2 1.2E-06 4.2E-11 77.6 5.7 57 216-273 25-86 (201)
162 1fzq_A ADP-ribosylation factor 98.2 2.4E-06 8.1E-11 74.1 7.4 105 87-200 59-175 (181)
163 1wf3_A GTP-binding protein; GT 98.2 3.8E-06 1.3E-10 79.6 9.3 115 85-201 52-171 (301)
164 2gco_A H9, RHO-related GTP-bin 98.2 1.1E-06 3.6E-11 77.5 5.2 57 216-273 24-84 (201)
165 3dz8_A RAS-related protein RAB 98.2 3.6E-07 1.2E-11 79.8 2.0 58 216-273 22-83 (191)
166 3q85_A GTP-binding protein REM 98.2 7E-07 2.4E-11 75.7 3.8 57 217-274 2-63 (169)
167 2fu5_C RAS-related protein RAB 98.2 3.6E-07 1.2E-11 78.8 1.9 57 216-273 7-68 (183)
168 2h17_A ADP-ribosylation factor 98.2 6E-07 2E-11 77.6 3.3 103 87-198 64-178 (181)
169 2y8e_A RAB-protein 6, GH09086P 98.2 7.2E-07 2.5E-11 76.2 3.8 105 87-200 62-174 (179)
170 3cpj_B GTP-binding protein YPT 98.2 1.1E-06 3.8E-11 78.8 5.2 57 216-273 12-73 (223)
171 1wb1_A Translation elongation 98.2 4.2E-06 1.5E-10 84.4 9.9 105 88-201 73-187 (482)
172 3cbq_A GTP-binding protein REM 98.2 5.9E-07 2E-11 79.1 3.2 57 216-273 22-83 (195)
173 2qu8_A Putative nucleolar GTP- 98.2 1.5E-05 5E-10 71.7 12.5 113 87-201 75-203 (228)
174 3mca_A HBS1, elongation factor 98.2 2.2E-07 7.5E-12 96.2 0.4 58 216-273 176-266 (592)
175 1z2a_A RAS-related protein RAB 98.2 9.3E-07 3.2E-11 74.6 4.1 105 86-199 52-163 (168)
176 1xzp_A Probable tRNA modificat 98.2 3.6E-06 1.2E-10 84.9 9.0 113 86-200 289-402 (482)
177 2b6h_A ADP-ribosylation factor 98.2 6.9E-07 2.4E-11 78.3 3.3 105 86-199 71-187 (192)
178 1mh1_A RAC1; GTP-binding, GTPa 98.2 1.1E-06 3.6E-11 75.7 4.4 56 217-274 5-65 (186)
179 3c5c_A RAS-like protein 12; GD 98.2 1.2E-06 4.2E-11 76.3 4.8 57 216-274 20-81 (187)
180 2bov_A RAla, RAS-related prote 98.2 3.6E-06 1.2E-10 73.8 7.9 105 87-200 61-174 (206)
181 2fv8_A H6, RHO-related GTP-bin 98.2 1.5E-06 5E-11 77.0 5.3 56 217-273 25-84 (207)
182 2hup_A RAS-related protein RAB 98.2 3.4E-06 1.1E-10 74.4 7.6 105 87-200 77-190 (201)
183 2j1l_A RHO-related GTP-binding 98.2 1.8E-06 6.2E-11 77.0 5.8 56 216-273 33-93 (214)
184 3p26_A Elongation factor 1 alp 98.2 5.8E-07 2E-11 90.8 2.9 58 216-273 32-122 (483)
185 2il1_A RAB12; G-protein, GDP, 98.2 2.5E-06 8.5E-11 74.6 6.6 104 87-199 74-186 (192)
186 3con_A GTPase NRAS; structural 98.2 2.6E-06 8.9E-11 73.9 6.7 106 86-200 67-180 (190)
187 3q85_A GTP-binding protein REM 98.2 3.6E-06 1.2E-10 71.2 7.5 105 86-199 49-163 (169)
188 3j2k_7 ERF3, eukaryotic polype 98.2 8E-06 2.8E-10 81.4 11.1 91 104-195 103-217 (439)
189 3cph_A RAS-related protein SEC 98.2 9.4E-07 3.2E-11 78.1 3.8 105 88-201 69-180 (213)
190 2hup_A RAS-related protein RAB 98.2 1.5E-06 5E-11 76.8 5.1 57 216-273 28-89 (201)
191 2hxs_A RAB-26, RAS-related pro 98.2 1.5E-06 5.3E-11 74.2 5.0 104 88-200 56-170 (178)
192 1c1y_A RAS-related protein RAP 98.2 3.6E-06 1.2E-10 70.9 7.2 105 86-199 49-163 (167)
193 1kk1_A EIF2gamma; initiation o 98.2 3.6E-06 1.2E-10 83.1 8.3 103 89-200 84-197 (410)
194 2b6h_A ADP-ribosylation factor 98.1 1.3E-06 4.4E-11 76.6 4.4 55 216-274 28-85 (192)
195 2g3y_A GTP-binding protein GEM 98.1 9.4E-07 3.2E-11 79.4 3.6 56 217-272 37-97 (211)
196 1kao_A RAP2A; GTP-binding prot 98.1 2.9E-06 1E-10 71.2 6.5 104 87-199 50-162 (167)
197 2fg5_A RAB-22B, RAS-related pr 98.1 1.2E-06 4.3E-11 76.4 4.3 104 86-200 70-183 (192)
198 4dsu_A GTPase KRAS, isoform 2B 98.1 3.3E-06 1.1E-10 72.8 6.9 106 86-200 50-163 (189)
199 3reg_A RHO-like small GTPase; 98.1 1.5E-06 5.3E-11 75.8 4.8 56 216-273 22-82 (194)
200 4dkx_A RAS-related protein RAB 98.1 6.2E-07 2.1E-11 80.9 2.2 106 84-198 58-171 (216)
201 3dz8_A RAS-related protein RAB 98.1 3.8E-06 1.3E-10 73.1 7.1 105 86-199 70-182 (191)
202 2erx_A GTP-binding protein DI- 98.1 6.2E-06 2.1E-10 69.6 8.3 106 87-201 50-165 (172)
203 1nrj_B SR-beta, signal recogni 98.1 7.4E-07 2.5E-11 79.4 2.5 55 216-274 11-67 (218)
204 1r2q_A RAS-related protein RAB 98.1 1E-06 3.5E-11 74.4 3.3 104 87-199 54-165 (170)
205 3lvq_E ARF-GAP with SH3 domain 98.1 1.3E-06 4.5E-11 88.2 4.7 54 216-273 321-377 (497)
206 2fu5_C RAS-related protein RAB 98.1 9.6E-07 3.3E-11 76.1 3.1 102 88-200 57-168 (183)
207 3kkq_A RAS-related protein M-R 98.1 2.7E-06 9.3E-11 73.2 5.9 105 87-200 65-179 (183)
208 2j1l_A RHO-related GTP-binding 98.1 2.6E-06 8.8E-11 76.0 5.8 106 86-200 80-206 (214)
209 1moz_A ARL1, ADP-ribosylation 98.1 7.6E-07 2.6E-11 76.6 1.9 105 87-200 61-177 (183)
210 1zbd_A Rabphilin-3A; G protein 98.1 2.8E-06 9.7E-11 74.5 5.7 106 86-200 55-168 (203)
211 2ce2_X GTPase HRAS; signaling 98.1 8.4E-06 2.9E-10 68.1 8.3 105 86-199 49-161 (166)
212 3tkl_A RAS-related protein RAB 98.1 2.8E-06 9.5E-11 73.9 5.5 105 87-200 64-176 (196)
213 1ek0_A Protein (GTP-binding pr 98.1 1.4E-06 4.8E-11 73.6 3.4 104 87-199 51-165 (170)
214 1z0j_A RAB-22, RAS-related pro 98.1 2.2E-06 7.4E-11 72.5 4.5 104 87-199 54-165 (170)
215 2zej_A Dardarin, leucine-rich 98.1 2E-06 7E-11 74.6 4.4 56 218-273 3-67 (184)
216 1s0u_A EIF-2-gamma, translatio 98.1 2.6E-06 9E-11 84.0 5.6 104 88-200 81-195 (408)
217 2p5s_A RAS and EF-hand domain 98.1 4E-06 1.4E-10 73.6 6.3 105 86-199 75-193 (199)
218 3q72_A GTP-binding protein RAD 98.1 3.2E-06 1.1E-10 71.3 5.4 107 85-200 46-161 (166)
219 3gj0_A GTP-binding nuclear pro 98.1 4.8E-07 1.6E-11 81.0 0.2 104 87-199 63-171 (221)
220 1mh1_A RAC1; GTP-binding, GTPa 98.1 1.1E-06 3.7E-11 75.7 2.4 106 86-200 51-177 (186)
221 3clv_A RAB5 protein, putative; 98.1 3.8E-06 1.3E-10 72.9 6.0 104 88-200 93-201 (208)
222 2fn4_A P23, RAS-related protei 98.1 2E-06 6.8E-11 73.5 4.0 105 87-200 56-169 (181)
223 2yc2_C IFT27, small RAB-relate 98.1 1.7E-06 5.9E-11 75.8 3.7 104 87-199 72-188 (208)
224 3bwd_D RAC-like GTP-binding pr 98.1 1E-06 3.4E-11 75.7 2.1 55 217-273 8-67 (182)
225 3t34_A Dynamin-related protein 98.1 3.1E-06 1E-10 82.1 5.6 25 217-241 34-58 (360)
226 3tw8_B RAS-related protein RAB 98.1 6.2E-07 2.1E-11 76.7 0.6 104 88-202 58-170 (181)
227 1g16_A RAS-related protein SEC 98.1 2E-06 6.9E-11 72.7 3.8 105 87-200 51-162 (170)
228 2gf9_A RAS-related protein RAB 98.1 2.4E-06 8.1E-11 74.3 4.2 106 86-200 69-182 (189)
229 2f7s_A C25KG, RAS-related prot 98.1 1.2E-06 4.1E-11 77.9 2.3 26 216-241 24-49 (217)
230 2gco_A H9, RHO-related GTP-bin 98.1 1.8E-06 6.2E-11 76.0 3.5 105 86-199 71-196 (201)
231 1m7b_A RND3/RHOE small GTP-bin 98.1 4.2E-06 1.4E-10 72.4 5.7 57 216-273 6-66 (184)
232 2iwr_A Centaurin gamma 1; ANK 98.1 1.3E-05 4.5E-10 68.5 8.8 97 86-199 52-165 (178)
233 2atx_A Small GTP binding prote 98.1 2.1E-06 7.1E-11 74.8 3.7 105 86-199 64-189 (194)
234 3reg_A RHO-like small GTPase; 98.1 1.1E-06 3.9E-11 76.7 2.0 106 86-200 69-185 (194)
235 2atx_A Small GTP binding prote 98.0 3.1E-06 1.1E-10 73.7 4.8 55 217-273 18-77 (194)
236 1z08_A RAS-related protein RAB 98.0 2.3E-06 8E-11 72.4 3.8 103 86-199 53-165 (170)
237 2oil_A CATX-8, RAS-related pro 98.0 3.4E-06 1.2E-10 73.4 5.0 105 86-199 72-184 (193)
238 3q5d_A Atlastin-1; G protein, 98.0 1.2E-06 4.2E-11 87.3 2.3 23 218-240 68-90 (447)
239 2nzj_A GTP-binding protein REM 98.0 4.6E-06 1.6E-10 70.9 5.6 106 87-200 51-166 (175)
240 2fh5_B SR-beta, signal recogni 98.0 1.1E-05 3.9E-10 71.3 8.4 104 87-199 53-212 (214)
241 3llu_A RAS-related GTP-binding 98.0 2.9E-06 1E-10 74.4 4.5 59 216-274 19-81 (196)
242 2qm8_A GTPase/ATPase; G protei 98.0 4.6E-07 1.6E-11 87.4 -0.9 23 217-239 55-77 (337)
243 1ky3_A GTP-binding protein YPT 98.0 4.3E-06 1.5E-10 71.4 5.3 105 87-200 57-175 (182)
244 3izy_P Translation initiation 98.0 4.5E-07 1.5E-11 92.6 -1.1 57 216-273 3-63 (537)
245 2ew1_A RAS-related protein RAB 98.0 2.5E-06 8.6E-11 75.6 3.9 104 87-199 74-185 (201)
246 1z06_A RAS-related protein RAB 98.0 7.7E-06 2.6E-10 70.9 7.0 100 87-195 68-180 (189)
247 3ihw_A Centg3; RAS, centaurin, 98.0 6.2E-06 2.1E-10 71.7 6.3 55 216-273 19-78 (184)
248 2x77_A ADP-ribosylation factor 98.0 1.1E-06 3.8E-11 76.3 1.5 105 87-200 65-181 (189)
249 3bwd_D RAC-like GTP-binding pr 98.0 1E-06 3.4E-11 75.7 1.1 105 86-199 54-177 (182)
250 2j0v_A RAC-like GTP-binding pr 98.0 4.5E-06 1.5E-10 73.9 5.4 56 216-273 8-68 (212)
251 2q3h_A RAS homolog gene family 98.0 1.6E-06 5.6E-11 76.0 2.5 105 87-200 67-192 (201)
252 2a5j_A RAS-related protein RAB 98.0 2E-06 6.8E-11 75.0 3.0 104 87-199 69-180 (191)
253 3cbq_A GTP-binding protein REM 98.0 1.6E-05 5.5E-10 69.8 8.8 106 85-199 69-184 (195)
254 2bme_A RAB4A, RAS-related prot 98.0 3.4E-06 1.2E-10 72.7 4.3 103 88-199 59-169 (186)
255 3th5_A RAS-related C3 botulinu 97.3 7.5E-07 2.6E-11 78.6 0.0 91 108-198 89-200 (204)
256 1zun_B Sulfate adenylate trans 98.0 1.8E-05 6.2E-10 78.7 9.9 97 87-192 103-213 (434)
257 3gee_A MNME, tRNA modification 98.0 6.7E-06 2.3E-10 82.8 6.8 84 115-200 307-395 (476)
258 2o52_A RAS-related protein RAB 98.0 2.4E-06 8.3E-11 75.2 3.1 103 88-199 74-184 (200)
259 3tr5_A RF-3, peptide chain rel 98.0 6.8E-07 2.3E-11 91.2 -0.5 57 218-274 14-94 (528)
260 3o47_A ADP-ribosylation factor 98.0 3.2E-06 1.1E-10 81.1 4.1 54 216-273 164-220 (329)
261 2gf0_A GTP-binding protein DI- 98.0 4.1E-06 1.4E-10 73.0 4.5 106 87-201 55-169 (199)
262 3o47_A ADP-ribosylation factor 98.0 7.3E-06 2.5E-10 78.6 6.6 106 86-200 207-324 (329)
263 4djt_A GTP-binding nuclear pro 98.0 2.1E-06 7.1E-11 76.4 2.5 105 88-201 61-173 (218)
264 3t1o_A Gliding protein MGLA; G 98.0 5.2E-06 1.8E-10 71.9 4.9 58 216-273 13-85 (198)
265 2gj8_A MNME, tRNA modification 98.0 4.9E-06 1.7E-10 71.6 4.6 107 87-200 51-163 (172)
266 3q3j_B RHO-related GTP-binding 98.0 1.6E-06 5.5E-11 77.4 1.5 108 84-200 71-200 (214)
267 3q3j_B RHO-related GTP-binding 98.0 4.7E-06 1.6E-10 74.4 4.6 57 216-273 26-86 (214)
268 2f9l_A RAB11B, member RAS onco 98.0 7.6E-06 2.6E-10 71.8 5.9 57 217-274 5-66 (199)
269 3p26_A Elongation factor 1 alp 98.0 1.5E-05 5.3E-10 80.3 8.9 99 86-193 109-228 (483)
270 1m2o_B GTP-binding protein SAR 98.0 3.2E-06 1.1E-10 73.9 3.2 103 87-198 66-187 (190)
271 2e87_A Hypothetical protein PH 98.0 4.3E-05 1.5E-09 73.9 11.5 113 87-201 213-334 (357)
272 3th5_A RAS-related C3 botulinu 97.2 1.1E-06 3.7E-11 77.5 0.0 56 216-273 29-89 (204)
273 3ihw_A Centg3; RAS, centaurin, 98.0 1.6E-05 5.6E-10 69.0 7.6 102 84-199 63-176 (184)
274 3dpu_A RAB family protein; roc 98.0 8.8E-06 3E-10 83.1 6.8 84 187-272 13-108 (535)
275 2qag_A Septin-2, protein NEDD5 97.9 4.3E-06 1.5E-10 81.3 4.1 58 216-273 36-106 (361)
276 2atv_A RERG, RAS-like estrogen 97.9 6.5E-06 2.2E-10 71.9 5.0 104 86-199 74-187 (196)
277 1gwn_A RHO-related GTP-binding 97.9 5.8E-06 2E-10 73.4 4.7 57 216-273 27-87 (205)
278 4gzl_A RAS-related C3 botulinu 97.9 2.6E-06 9E-11 75.3 2.4 105 86-199 76-201 (204)
279 2bcg_Y Protein YP2, GTP-bindin 97.9 3E-06 1E-10 74.6 2.8 105 87-200 56-168 (206)
280 1f6b_A SAR1; gtpases, N-termin 97.9 2.6E-06 8.7E-11 75.1 2.3 103 87-198 68-194 (198)
281 1oix_A RAS-related protein RAB 97.9 1E-05 3.4E-10 70.8 5.9 57 217-274 29-90 (191)
282 1wb1_A Translation elongation 97.9 2.2E-06 7.5E-11 86.5 1.9 57 217-273 19-84 (482)
283 1wms_A RAB-9, RAB9, RAS-relate 97.9 1.5E-05 5.2E-10 67.8 6.9 104 87-199 55-170 (177)
284 1zo1_I IF2, translation initia 97.9 1.6E-06 5.5E-11 87.8 0.7 57 216-273 3-62 (501)
285 1f60_A Elongation factor EEF1A 97.9 1.2E-06 4.2E-11 87.8 -0.3 57 217-273 7-96 (458)
286 3p32_A Probable GTPase RV1496/ 97.9 2.1E-05 7.3E-10 76.0 8.3 103 85-201 169-282 (355)
287 2elf_A Protein translation elo 97.9 3.6E-06 1.2E-10 82.1 2.7 47 219-274 23-72 (370)
288 2fv8_A H6, RHO-related GTP-bin 97.9 3.3E-06 1.1E-10 74.7 2.2 106 86-200 71-197 (207)
289 2wkq_A NPH1-1, RAS-related C3 97.9 9.4E-06 3.2E-10 76.7 5.5 56 216-273 154-214 (332)
290 2lkc_A Translation initiation 97.9 1.9E-05 6.6E-10 67.2 6.9 85 116-201 74-169 (178)
291 2cxx_A Probable GTP-binding pr 97.9 0.00014 4.8E-09 62.5 12.5 109 89-200 45-181 (190)
292 1lnz_A SPO0B-associated GTP-bi 97.9 9.1E-06 3.1E-10 78.4 5.1 90 112-202 228-329 (342)
293 1d2e_A Elongation factor TU (E 97.9 5.1E-06 1.8E-10 81.7 3.4 57 217-273 3-77 (397)
294 3lvq_E ARF-GAP with SH3 domain 97.9 4.6E-06 1.6E-10 84.2 3.0 109 85-202 363-483 (497)
295 1kk1_A EIF2gamma; initiation o 97.9 5.3E-06 1.8E-10 81.8 3.4 41 216-256 9-51 (410)
296 3llu_A RAS-related GTP-binding 97.9 1.6E-05 5.6E-10 69.5 6.2 103 85-197 66-191 (196)
297 1zun_B Sulfate adenylate trans 97.9 5.9E-06 2E-10 82.2 3.7 25 217-241 24-48 (434)
298 1vg8_A RAS-related protein RAB 97.9 4.7E-06 1.6E-10 73.1 2.5 105 87-200 56-172 (207)
299 3oes_A GTPase rhebl1; small GT 97.9 2.7E-06 9.2E-11 74.8 0.8 106 86-200 70-184 (201)
300 2p67_A LAO/AO transport system 97.8 5.7E-06 2E-10 79.7 3.0 38 216-253 55-98 (341)
301 2c78_A Elongation factor TU-A; 97.8 3.6E-06 1.2E-10 83.0 1.6 59 216-274 10-87 (405)
302 3c5h_A Glucocorticoid receptor 97.8 3.7E-05 1.3E-09 70.7 8.2 80 120-199 162-251 (255)
303 3geh_A MNME, tRNA modification 97.8 7E-06 2.4E-10 82.4 3.3 84 115-200 298-381 (462)
304 3c5c_A RAS-like protein 12; GD 97.8 7.7E-06 2.6E-10 71.1 3.0 105 85-199 66-182 (187)
305 2xex_A Elongation factor G; GT 97.8 7.3E-06 2.5E-10 86.3 3.2 58 217-274 10-87 (693)
306 1ega_A Protein (GTP-binding pr 97.8 1.7E-05 5.7E-10 75.1 5.3 85 116-201 84-173 (301)
307 1d2e_A Elongation factor TU (E 97.8 4.4E-05 1.5E-09 75.0 8.5 94 87-189 65-171 (397)
308 2wji_A Ferrous iron transport 97.8 1.5E-05 5.2E-10 67.7 4.4 106 87-199 49-161 (165)
309 3iby_A Ferrous iron transport 97.8 7.4E-06 2.5E-10 75.7 2.0 112 86-200 46-164 (256)
310 1jny_A EF-1-alpha, elongation 97.8 6.3E-06 2.2E-10 82.0 1.6 57 217-273 6-95 (435)
311 1s0u_A EIF-2-gamma, translatio 97.8 1.3E-05 4.6E-10 78.9 4.0 41 216-256 7-49 (408)
312 3sjy_A Translation initiation 97.7 7.6E-06 2.6E-10 80.6 2.1 25 216-240 7-31 (403)
313 2c78_A Elongation factor TU-A; 97.7 5.3E-05 1.8E-09 74.5 8.2 95 86-189 73-180 (405)
314 3p32_A Probable GTPase RV1496/ 97.7 1.3E-05 4.6E-10 77.5 3.7 23 216-238 78-100 (355)
315 3cpj_B GTP-binding protein YPT 97.7 2.5E-06 8.7E-11 76.4 -1.4 104 88-200 62-173 (223)
316 2wkq_A NPH1-1, RAS-related C3 97.7 1.2E-05 4E-10 76.1 2.7 103 88-199 203-326 (332)
317 3tr5_A RF-3, peptide chain rel 97.7 7.4E-05 2.5E-09 76.1 8.5 67 87-162 81-149 (528)
318 3a1s_A Iron(II) transport prot 97.7 3.8E-05 1.3E-09 71.0 5.7 110 86-200 50-164 (258)
319 3sop_A Neuronal-specific septi 97.7 1.9E-05 6.6E-10 73.5 3.7 57 218-274 3-72 (270)
320 3avx_A Elongation factor TS, e 97.7 0.00015 5E-09 79.6 11.0 95 104-199 367-482 (1289)
321 2ywe_A GTP-binding protein LEP 97.7 4.5E-05 1.5E-09 78.8 6.6 104 88-201 73-182 (600)
322 1jny_A EF-1-alpha, elongation 97.7 6.8E-05 2.3E-09 74.5 7.6 98 87-193 83-203 (435)
323 1m7b_A RND3/RHOE small GTP-bin 97.7 8.3E-06 2.8E-10 70.5 0.8 105 86-199 53-179 (184)
324 1gwn_A RHO-related GTP-binding 97.6 8.6E-06 2.9E-10 72.3 0.7 105 86-199 74-200 (205)
325 1r5b_A Eukaryotic peptide chai 97.6 9.3E-05 3.2E-09 74.3 8.2 89 104-193 129-242 (467)
326 3i8s_A Ferrous iron transport 97.6 7.7E-06 2.6E-10 76.3 0.1 113 86-200 48-166 (274)
327 2elf_A Protein translation elo 97.6 0.00011 3.9E-09 71.5 8.3 105 87-202 59-179 (370)
328 2qag_B Septin-6, protein NEDD5 97.6 4.1E-05 1.4E-09 75.8 5.2 57 218-274 43-107 (427)
329 3dpu_A RAB family protein; roc 97.6 3.4E-05 1.1E-09 78.7 4.7 105 86-201 96-206 (535)
330 3izq_1 HBS1P, elongation facto 97.6 4.8E-05 1.6E-09 78.9 5.8 98 87-193 244-362 (611)
331 2h5e_A Peptide chain release f 97.6 1.9E-05 6.7E-10 80.5 2.7 58 217-274 13-94 (529)
332 1r5b_A Eukaryotic peptide chai 97.6 1.4E-05 4.8E-10 80.3 1.4 57 217-273 43-132 (467)
333 4dkx_A RAS-related protein RAB 97.6 5.1E-05 1.7E-09 68.2 4.9 56 217-273 13-73 (216)
334 2zej_A Dardarin, leucine-rich 97.6 2.3E-05 7.9E-10 67.8 2.5 104 87-200 55-175 (184)
335 3r7w_A Gtpase1, GTP-binding pr 97.6 0.0001 3.6E-09 69.7 7.3 100 87-192 51-170 (307)
336 1g7s_A Translation initiation 97.6 1.4E-05 4.7E-10 82.7 0.9 57 216-274 4-82 (594)
337 2wsm_A Hydrogenase expression/ 97.6 8.5E-06 2.9E-10 72.6 -0.6 36 217-252 30-70 (221)
338 1dar_A EF-G, elongation factor 97.5 0.0001 3.5E-09 77.5 7.0 58 217-274 12-89 (691)
339 2qtf_A Protein HFLX, GTP-bindi 97.5 0.00018 6.3E-09 69.8 8.2 114 88-202 226-353 (364)
340 3qq5_A Small GTP-binding prote 97.5 2.9E-05 9.8E-10 77.0 2.5 109 89-201 84-194 (423)
341 2g3y_A GTP-binding protein GEM 97.5 0.00011 3.8E-09 65.7 6.2 106 85-199 84-199 (211)
342 3l0i_B RAS-related protein RAB 97.5 1.4E-06 4.9E-11 76.5 -6.3 100 88-198 82-191 (199)
343 1yrb_A ATP(GTP)binding protein 97.5 0.00034 1.2E-08 63.8 9.3 112 87-202 108-256 (262)
344 2hf9_A Probable hydrogenase ni 97.5 3.1E-05 1E-09 69.2 2.1 24 217-240 38-61 (226)
345 1tq4_A IIGP1, interferon-induc 97.5 9E-05 3.1E-09 73.2 5.2 57 218-275 70-133 (413)
346 3k53_A Ferrous iron transport 97.5 4.9E-05 1.7E-09 70.4 3.1 111 86-201 48-164 (271)
347 3b1v_A Ferrous iron uptake tra 97.4 8.2E-05 2.8E-09 69.3 4.4 106 87-200 48-161 (272)
348 2qnr_A Septin-2, protein NEDD5 97.4 5.3E-05 1.8E-09 71.7 3.1 25 216-240 17-41 (301)
349 3t5d_A Septin-7; GTP-binding p 97.4 0.00052 1.8E-08 63.6 9.8 79 121-199 116-200 (274)
350 1f60_A Elongation factor EEF1A 97.4 0.0001 3.6E-09 73.7 5.3 98 87-193 84-202 (458)
351 3izy_P Translation initiation 97.4 5E-06 1.7E-10 84.8 -4.8 119 116-234 71-211 (537)
352 3avx_A Elongation factor TS, e 97.4 5.3E-05 1.8E-09 83.0 2.8 58 216-273 295-370 (1289)
353 2aka_B Dynamin-1; fusion prote 97.4 0.00015 5.2E-09 67.5 5.6 113 87-199 124-249 (299)
354 2wjg_A FEOB, ferrous iron tran 97.4 9.7E-05 3.3E-09 63.5 3.8 111 87-201 53-167 (188)
355 1g7s_A Translation initiation 97.4 6.6E-05 2.3E-09 77.5 3.1 105 89-202 71-217 (594)
356 2qag_C Septin-7; cell cycle, c 97.4 5.7E-05 1.9E-09 74.8 2.4 27 216-242 30-56 (418)
357 1udx_A The GTP-binding protein 97.3 0.00031 1.1E-08 69.4 7.3 87 116-202 231-324 (416)
358 2rdo_7 EF-G, elongation factor 97.3 0.00019 6.6E-09 75.6 6.2 58 217-274 10-94 (704)
359 3cb4_D GTP-binding protein LEP 97.3 8.6E-05 3E-09 76.7 2.8 58 217-274 4-83 (599)
360 2j37_W Signal recognition part 97.3 0.00011 3.7E-09 74.4 3.3 31 216-246 100-136 (504)
361 2p67_A LAO/AO transport system 97.3 0.00045 1.6E-08 66.3 7.5 102 85-200 146-258 (341)
362 3c5h_A Glucocorticoid receptor 97.3 4.1E-05 1.4E-09 70.4 -0.0 25 216-240 18-51 (255)
363 3mca_A HBS1, elongation factor 97.2 2.1E-05 7.1E-10 81.4 -2.5 87 104-191 263-371 (592)
364 2www_A Methylmalonic aciduria 97.2 0.0011 3.9E-08 63.7 9.9 103 84-200 163-276 (349)
365 2cjw_A GTP-binding protein GEM 97.2 0.00029 1E-08 61.4 4.7 83 117-199 77-168 (192)
366 1n0u_A EF-2, elongation factor 97.2 0.00012 4.1E-09 78.7 2.5 24 217-240 19-42 (842)
367 2ywe_A GTP-binding protein LEP 97.2 8.1E-05 2.8E-09 76.9 1.0 58 217-274 6-85 (600)
368 1yrb_A ATP(GTP)binding protein 97.1 5.9E-05 2E-09 68.9 -0.4 34 217-250 14-52 (262)
369 1jwy_B Dynamin A GTPase domain 97.1 0.002 6.8E-08 60.4 10.1 113 87-201 130-260 (315)
370 3ney_A 55 kDa erythrocyte memb 97.1 4.8E-05 1.6E-09 67.6 -1.3 54 219-272 21-76 (197)
371 2j69_A Bacterial dynamin-like 97.0 0.00063 2.1E-08 71.6 6.3 105 88-200 174-322 (695)
372 3zvr_A Dynamin-1; hydrolase, D 97.0 0.0007 2.4E-08 71.6 6.1 112 88-199 150-274 (772)
373 3lxx_A GTPase IMAP family memb 97.0 0.002 6.9E-08 58.0 8.4 113 87-200 77-211 (239)
374 1nrj_B SR-beta, signal recogni 97.0 0.00049 1.7E-08 60.8 3.9 99 86-189 53-170 (218)
375 1pui_A ENGB, probable GTP-bind 96.9 0.0042 1.4E-07 54.2 9.8 84 119-202 107-198 (210)
376 3lxw_A GTPase IMAP family memb 96.9 0.0015 5.2E-08 59.5 6.5 113 86-202 68-207 (247)
377 2xtp_A GTPase IMAP family memb 96.8 0.0012 4.2E-08 60.2 5.2 114 86-201 69-206 (260)
378 3r7w_B Gtpase2, GTP-binding pr 96.7 0.00084 2.9E-08 64.1 4.0 57 219-275 1-59 (331)
379 2v3c_C SRP54, signal recogniti 96.7 0.00048 1.6E-08 68.4 2.3 23 217-239 99-121 (432)
380 2dy1_A Elongation factor G; tr 96.7 0.002 6.8E-08 67.4 7.1 65 87-160 73-139 (665)
381 2wsm_A Hydrogenase expression/ 96.7 0.0014 4.6E-08 58.0 5.0 103 84-200 105-211 (221)
382 1zo1_I IF2, translation initia 96.7 7.8E-05 2.7E-09 75.4 -3.6 83 116-198 70-162 (501)
383 1ko7_A HPR kinase/phosphatase; 96.7 0.0012 4E-08 62.7 4.7 99 141-245 73-172 (314)
384 2rdo_7 EF-G, elongation factor 96.7 0.0068 2.3E-07 63.8 10.8 65 88-161 82-148 (704)
385 2dy1_A Elongation factor G; tr 96.6 0.00088 3E-08 70.1 3.4 58 217-274 9-86 (665)
386 1dar_A EF-G, elongation factor 96.6 0.0047 1.6E-07 64.9 8.8 66 87-161 76-143 (691)
387 2h5e_A Peptide chain release f 96.6 0.0033 1.1E-07 63.9 7.3 69 86-163 80-150 (529)
388 1cip_A Protein (guanine nucleo 96.5 0.00045 1.5E-08 66.8 0.3 104 87-199 192-340 (353)
389 2qag_A Septin-2, protein NEDD5 96.5 0.0023 7.9E-08 61.8 5.2 79 122-200 147-231 (361)
390 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0032 1.1E-07 62.6 6.2 61 218-278 68-156 (457)
391 2x2e_A Dynamin-1; nitration, h 96.4 0.0011 3.9E-08 63.7 2.8 113 87-199 129-254 (353)
392 1wxq_A GTP-binding protein; st 96.3 0.0029 9.8E-08 62.1 4.9 48 147-194 214-261 (397)
393 1kgd_A CASK, peripheral plasma 96.3 0.00098 3.3E-08 57.6 1.3 38 219-256 7-45 (180)
394 4fid_A G protein alpha subunit 96.3 0.0035 1.2E-07 60.2 5.2 67 86-161 159-242 (340)
395 3vqt_A RF-3, peptide chain rel 96.3 0.0079 2.7E-07 61.4 8.0 120 219-344 33-179 (548)
396 3r7w_B Gtpase2, GTP-binding pr 96.3 0.0021 7.3E-08 61.3 3.3 99 87-192 45-163 (331)
397 2xex_A Elongation factor G; GT 96.2 0.0085 2.9E-07 62.9 8.1 67 87-162 74-142 (693)
398 2ged_A SR-beta, signal recogni 96.2 0.0022 7.5E-08 55.2 2.9 57 114-170 112-179 (193)
399 3ohm_A Guanine nucleotide-bind 96.2 0.0019 6.6E-08 61.6 2.6 105 86-199 165-314 (327)
400 3vqt_A RF-3, peptide chain rel 96.2 0.0061 2.1E-07 62.3 6.4 58 103-161 107-166 (548)
401 2f9l_A RAB11B, member RAS onco 96.1 0.0018 6E-08 56.4 1.9 106 87-201 53-166 (199)
402 1zcb_A G alpha I/13; GTP-bindi 96.1 0.00057 1.9E-08 66.3 -1.5 104 87-199 200-349 (362)
403 3szr_A Interferon-induced GTP- 96.1 0.0042 1.4E-07 64.3 4.8 23 218-240 46-68 (608)
404 3t34_A Dynamin-related protein 96.0 0.0087 3E-07 57.5 6.6 109 87-197 135-255 (360)
405 2xtz_A Guanine nucleotide-bind 96.0 0.0019 6.6E-08 62.3 1.8 65 87-160 182-263 (354)
406 3l82_B F-box only protein 4; T 96.0 0.0098 3.4E-07 53.2 6.1 92 106-197 111-217 (227)
407 2hf9_A Probable hydrogenase ni 95.9 0.012 4.2E-07 51.9 6.5 77 121-199 140-220 (226)
408 2qm8_A GTPase/ATPase; G protei 95.9 0.011 3.8E-07 56.5 6.3 105 83-201 143-259 (337)
409 1azs_C GS-alpha; complex (lyas 95.8 0.0027 9.2E-08 62.3 1.9 66 87-161 216-298 (402)
410 3j25_A Tetracycline resistance 95.8 0.004 1.4E-07 64.8 2.9 56 104-160 75-132 (638)
411 3dm5_A SRP54, signal recogniti 95.6 0.016 5.4E-07 57.5 6.6 23 216-238 99-121 (443)
412 3tau_A Guanylate kinase, GMP k 95.4 0.0054 1.8E-07 54.2 2.1 37 218-254 9-46 (208)
413 1ye8_A Protein THEP1, hypothet 95.4 0.0045 1.5E-07 53.6 1.4 23 219-241 2-24 (178)
414 1lvg_A Guanylate kinase, GMP k 95.3 0.0046 1.6E-07 54.3 1.1 22 219-240 6-27 (198)
415 2qpt_A EH domain-containing pr 95.2 0.03 1E-06 57.1 7.1 62 111-172 179-243 (550)
416 2qor_A Guanylate kinase; phosp 95.2 0.0045 1.5E-07 54.4 0.7 23 218-240 13-35 (204)
417 1zp6_A Hypothetical protein AT 95.1 0.0083 2.8E-07 51.6 2.3 23 218-240 10-32 (191)
418 1s96_A Guanylate kinase, GMP k 95.0 0.0068 2.3E-07 54.3 1.4 37 218-254 17-55 (219)
419 3c8u_A Fructokinase; YP_612366 94.9 0.0099 3.4E-07 52.3 2.3 25 216-240 21-45 (208)
420 3j25_A Tetracycline resistance 94.9 0.01 3.5E-07 61.7 2.7 57 219-275 4-80 (638)
421 1ex7_A Guanylate kinase; subst 94.8 0.0077 2.6E-07 52.7 1.1 37 220-256 4-41 (186)
422 1znw_A Guanylate kinase, GMP k 94.7 0.0081 2.8E-07 52.9 1.2 22 219-240 22-43 (207)
423 3tr0_A Guanylate kinase, GMP k 94.7 0.01 3.5E-07 51.5 1.8 22 219-240 9-30 (205)
424 2qnr_A Septin-2, protein NEDD5 94.7 0.041 1.4E-06 51.6 5.9 50 147-197 155-208 (301)
425 1oix_A RAS-related protein RAB 94.6 0.0041 1.4E-07 53.9 -1.0 84 116-199 97-188 (191)
426 1z6g_A Guanylate kinase; struc 94.5 0.0096 3.3E-07 53.1 1.2 22 219-240 25-46 (218)
427 1np6_A Molybdopterin-guanine d 94.4 0.011 3.7E-07 51.1 1.3 22 219-240 8-29 (174)
428 3a00_A Guanylate kinase, GMP k 94.4 0.01 3.6E-07 51.2 1.2 21 220-240 4-24 (186)
429 3asz_A Uridine kinase; cytidin 94.3 0.016 5.3E-07 50.8 1.9 24 217-240 6-29 (211)
430 2pcj_A ABC transporter, lipopr 94.2 0.016 5.3E-07 52.0 1.8 23 219-241 32-54 (224)
431 2j41_A Guanylate kinase; GMP, 94.2 0.016 5.4E-07 50.4 1.8 24 218-241 7-30 (207)
432 1n0u_A EF-2, elongation factor 94.2 0.028 9.6E-07 60.3 4.0 65 87-160 97-163 (842)
433 3tif_A Uncharacterized ABC tra 94.1 0.015 5.3E-07 52.5 1.7 23 219-241 33-55 (235)
434 3lnc_A Guanylate kinase, GMP k 94.1 0.017 5.9E-07 51.5 2.0 23 218-240 28-51 (231)
435 3l2o_B F-box only protein 4; s 94.1 0.049 1.7E-06 51.0 5.0 92 106-197 196-302 (312)
436 1kag_A SKI, shikimate kinase I 94.1 0.015 5.1E-07 49.1 1.4 22 219-240 6-27 (173)
437 2f1r_A Molybdopterin-guanine d 94.0 0.0078 2.7E-07 51.9 -0.5 22 219-240 4-25 (171)
438 4gp7_A Metallophosphoesterase; 94.0 0.016 5.4E-07 49.5 1.4 21 218-238 10-30 (171)
439 4fn5_A EF-G 1, elongation fact 94.0 0.053 1.8E-06 57.0 5.6 21 218-238 14-34 (709)
440 2v9p_A Replication protein E1; 93.9 0.017 5.9E-07 54.5 1.6 22 218-239 127-148 (305)
441 3b85_A Phosphate starvation-in 93.9 0.02 7E-07 50.8 2.0 29 219-248 24-52 (208)
442 2bdt_A BH3686; alpha-beta prot 93.9 0.016 5.4E-07 49.9 1.2 21 219-239 4-24 (189)
443 4fn5_A EF-G 1, elongation fact 93.9 0.062 2.1E-06 56.5 6.0 58 104-162 93-152 (709)
444 4eun_A Thermoresistant glucoki 93.9 0.019 6.3E-07 50.2 1.7 22 218-239 30-51 (200)
445 2cbz_A Multidrug resistance-as 93.9 0.019 6.3E-07 52.0 1.7 23 219-241 33-55 (237)
446 1g6h_A High-affinity branched- 93.7 0.02 6.9E-07 52.4 1.7 23 219-241 35-57 (257)
447 2ff7_A Alpha-hemolysin translo 93.7 0.02 6.9E-07 52.1 1.7 23 219-241 37-59 (247)
448 2onk_A Molybdate/tungstate ABC 93.7 0.02 7E-07 51.9 1.6 22 219-240 26-47 (240)
449 4g1u_C Hemin import ATP-bindin 93.7 0.021 7.1E-07 52.7 1.7 22 219-240 39-60 (266)
450 1b0u_A Histidine permease; ABC 93.7 0.019 6.6E-07 52.8 1.4 23 219-241 34-56 (262)
451 1mv5_A LMRA, multidrug resista 93.7 0.025 8.5E-07 51.3 2.1 24 218-241 29-52 (243)
452 1sgw_A Putative ABC transporte 93.6 0.02 6.9E-07 51.1 1.4 23 219-241 37-59 (214)
453 3gfo_A Cobalt import ATP-bindi 93.6 0.022 7.5E-07 52.9 1.7 23 219-241 36-58 (275)
454 2pze_A Cystic fibrosis transme 93.6 0.022 7.6E-07 51.2 1.7 23 219-241 36-58 (229)
455 2bbw_A Adenylate kinase 4, AK4 93.6 0.024 8.1E-07 51.2 1.8 22 217-238 27-48 (246)
456 2j37_W Signal recognition part 93.6 0.072 2.4E-06 53.7 5.5 105 86-200 182-310 (504)
457 2eyu_A Twitching motility prot 93.6 0.021 7.2E-07 52.5 1.5 21 219-239 27-47 (261)
458 1knq_A Gluconate kinase; ALFA/ 93.5 0.027 9.2E-07 47.7 2.0 22 218-239 9-30 (175)
459 2i3b_A HCR-ntpase, human cance 93.5 0.019 6.6E-07 50.1 1.1 22 219-240 3-24 (189)
460 3uie_A Adenylyl-sulfate kinase 93.5 0.026 9E-07 49.2 1.9 24 217-240 25-48 (200)
461 2ghi_A Transport protein; mult 93.5 0.024 8.2E-07 52.1 1.7 22 219-240 48-69 (260)
462 2olj_A Amino acid ABC transpor 93.4 0.024 8.3E-07 52.2 1.7 23 219-241 52-74 (263)
463 2qi9_C Vitamin B12 import ATP- 93.4 0.024 8.3E-07 51.7 1.7 23 219-241 28-50 (249)
464 1ji0_A ABC transporter; ATP bi 93.4 0.025 8.4E-07 51.3 1.7 23 219-241 34-56 (240)
465 2if2_A Dephospho-COA kinase; a 93.3 0.025 8.6E-07 49.2 1.5 21 219-239 3-23 (204)
466 2d2e_A SUFC protein; ABC-ATPas 93.3 0.026 8.7E-07 51.5 1.6 22 219-240 31-52 (250)
467 2ixe_A Antigen peptide transpo 93.3 0.026 8.8E-07 52.2 1.7 22 219-240 47-68 (271)
468 1ly1_A Polynucleotide kinase; 93.3 0.03 1E-06 47.3 2.0 22 218-239 3-24 (181)
469 1vpl_A ABC transporter, ATP-bi 93.3 0.026 8.9E-07 51.8 1.7 23 219-241 43-65 (256)
470 2zu0_C Probable ATP-dependent 93.3 0.026 8.9E-07 52.0 1.6 22 219-240 48-69 (267)
471 2ihy_A ABC transporter, ATP-bi 93.3 0.027 9.1E-07 52.4 1.7 23 219-241 49-71 (279)
472 1cke_A CK, MSSA, protein (cyti 93.2 0.026 8.9E-07 49.8 1.5 23 218-240 6-28 (227)
473 3nh6_A ATP-binding cassette SU 93.2 0.017 5.9E-07 54.5 0.3 23 218-240 81-103 (306)
474 3lw7_A Adenylate kinase relate 93.2 0.028 9.5E-07 46.9 1.6 19 219-237 3-21 (179)
475 2rhm_A Putative kinase; P-loop 93.2 0.035 1.2E-06 47.5 2.2 23 217-239 5-27 (193)
476 2yz2_A Putative ABC transporte 93.2 0.028 9.6E-07 51.8 1.7 23 219-241 35-57 (266)
477 2nq2_C Hypothetical ABC transp 93.2 0.028 9.7E-07 51.4 1.7 23 219-241 33-55 (253)
478 2qag_C Septin-7; cell cycle, c 93.1 0.088 3E-06 51.8 5.1 73 121-193 139-217 (418)
479 2qt1_A Nicotinamide riboside k 93.0 0.039 1.3E-06 48.2 2.3 24 217-240 21-44 (207)
480 1h65_A Chloroplast outer envel 93.0 0.18 6E-06 46.1 6.9 76 86-163 85-170 (270)
481 3aez_A Pantothenate kinase; tr 93.0 0.034 1.1E-06 52.6 2.0 25 216-240 89-113 (312)
482 3tui_C Methionine import ATP-b 92.9 0.029 1E-06 54.2 1.4 23 219-241 56-78 (366)
483 2pt7_A CAG-ALFA; ATPase, prote 92.9 0.034 1.2E-06 52.9 1.8 22 219-240 173-194 (330)
484 3kb2_A SPBC2 prophage-derived 92.9 0.033 1.1E-06 46.7 1.5 22 219-240 3-24 (173)
485 3t61_A Gluconokinase; PSI-biol 92.9 0.032 1.1E-06 48.5 1.5 23 218-240 19-41 (202)
486 1jjv_A Dephospho-COA kinase; P 92.9 0.037 1.3E-06 48.2 1.9 22 218-239 3-24 (206)
487 1odf_A YGR205W, hypothetical 3 92.9 0.066 2.2E-06 50.0 3.7 24 216-239 30-53 (290)
488 2xxa_A Signal recognition part 92.8 0.068 2.3E-06 52.8 3.9 22 217-238 100-121 (433)
489 1qhx_A CPT, protein (chloramph 92.7 0.038 1.3E-06 46.8 1.7 22 219-240 5-26 (178)
490 2jaq_A Deoxyguanosine kinase; 92.7 0.034 1.2E-06 47.9 1.5 21 219-239 2-22 (205)
491 2pjz_A Hypothetical protein ST 92.7 0.036 1.2E-06 51.0 1.7 22 219-240 32-53 (263)
492 1htw_A HI0065; nucleotide-bind 92.7 0.043 1.5E-06 46.5 1.9 24 218-241 34-57 (158)
493 2gza_A Type IV secretion syste 92.7 0.036 1.2E-06 53.4 1.6 22 219-240 177-198 (361)
494 3dm5_A SRP54, signal recogniti 92.6 0.44 1.5E-05 47.1 9.5 98 86-194 181-282 (443)
495 3cm0_A Adenylate kinase; ATP-b 92.6 0.042 1.4E-06 46.8 1.8 23 217-239 4-26 (186)
496 4a74_A DNA repair and recombin 92.6 0.035 1.2E-06 48.9 1.3 22 218-239 26-47 (231)
497 3vaa_A Shikimate kinase, SK; s 92.5 0.041 1.4E-06 47.9 1.7 22 218-239 26-47 (199)
498 2bbs_A Cystic fibrosis transme 92.5 0.041 1.4E-06 51.4 1.8 23 219-241 66-88 (290)
499 1rz3_A Hypothetical protein rb 92.4 0.048 1.7E-06 47.6 2.1 23 217-239 22-44 (201)
500 1nks_A Adenylate kinase; therm 92.4 0.047 1.6E-06 46.5 1.9 21 219-239 3-23 (194)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-55 Score=419.28 Aligned_cols=273 Identities=35% Similarity=0.624 Sum_probs=226.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeE
Q 017100 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (377)
Q Consensus 100 ~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~v 179 (377)
+|||||||.++.+++.+.++++|+|++|+|+|+|.++.++.+++++.++|+++|+||+||++.+..+.|.+++++.|.++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~ 82 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS 82 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence 89999999999999999999999999999999999999999999999999999999999999888889999998778899
Q ss_pred EEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE
Q 017100 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (377)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (377)
+++|++++.|+.+|.+.+.++......+...++.....++|++||+||||||||||+|++++.+.+++.||+|++.+++.
T Consensus 83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~ 162 (282)
T 1puj_A 83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK 162 (282)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE
Confidence 99999999999999887777654432222233444567899999999999999999999988889999999999999988
Q ss_pred eCCceEEEcCCccccCCCCcHHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCCChhhhhhhhccCCCCCcHHHHHH
Q 017100 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (377)
Q Consensus 260 ~~~~~~l~DTPG~i~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~ 339 (377)
++.++.++|||||..+...+.+.++++++++++++..++.++++.++++.+++. +++.|.++|+++..+.+..+|++
T Consensus 163 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~~~~~~~~~~~~l~ 239 (282)
T 1puj_A 163 VGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH---YPERLKERYGLDEIPEDIAELFD 239 (282)
T ss_dssp ETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHH---CHHHHHHHTTCSSCCSSHHHHHH
T ss_pred eCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHh---ChHHHHHHcCCCCCCCCHHHHHH
Confidence 888999999999999888888889999999999999999999999999999876 67889999999743346889999
Q ss_pred HHHHHh----cCC--cHHHHHHHHHHHHHcCCCCceeccCCC
Q 017100 340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPP 375 (377)
Q Consensus 340 ~~a~~~----~~g--D~~~Aa~~il~d~~~Gklg~~~ld~pp 375 (377)
.+|++. +|| |+++||+.||+|||+||||+||||.|+
T Consensus 240 ~~a~~~g~~~kgg~~d~~~aa~~~l~d~~~Gklg~~~l~~~~ 281 (282)
T 1puj_A 240 AIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQPT 281 (282)
T ss_dssp HHHHHHTCBCSTTCBCHHHHHHHHHHHHHTTTTCSCCSCCCC
T ss_pred HHHHHhCCcccCCcccHHHHHHHHHHHHHcCCCCceECCCCC
Confidence 999874 455 999999999999999999999999875
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=2.6e-48 Score=365.24 Aligned_cols=242 Identities=31% Similarity=0.549 Sum_probs=193.1
Q ss_pred CCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEE
Q 017100 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180 (377)
Q Consensus 101 qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi 180 (377)
|||||||.++.+++.+.++++|+|++|+|+|+|.++.++.++ ++ ++|+++|+||+||++.+..+.|.+++++.|.++
T Consensus 2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v- 78 (262)
T 3cnl_A 2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV- 78 (262)
T ss_dssp -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence 899999999999999999999999999999999999988877 77 999999999999999888889999998888888
Q ss_pred EeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe
Q 017100 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260 (377)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~ 260 (377)
++|++++.|+++|.+.+++.. .+++++|+||||||||||+|.+...+.+++.||+|++.+++.+
T Consensus 79 ~iSa~~~~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~ 142 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL 142 (262)
T ss_dssp EECCTTSCHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC
T ss_pred EEECCCCcCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe
Confidence 999999999887765543221 4799999999999999999999887789999999999999988
Q ss_pred CCceEEEcCCccccCCC-CcHHHHHHHHHhccccccCcChhHHHHHHHHHHHcCCCCChhhhhhhhccCCCCCcHHHHHH
Q 017100 261 GKDLEFLDSPGIIPMRI-SDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (377)
Q Consensus 261 ~~~~~l~DTPG~i~~~~-~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~ 339 (377)
+.++.++||||+..+.. .+.+.+ ++..++.++++.++++.++++ +++.+.++|+++. .+ .+|++
T Consensus 143 ~~~~~l~DtpG~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~l~~~---~~~~l~~~y~i~~--~d-~~~l~ 207 (262)
T 3cnl_A 143 ENGVKILDTPGILYKNIFSEDLAA---------KLLLVGSLPVERIEDQRIFER---AFEIFARSIGIES--SF-SEFFE 207 (262)
T ss_dssp TTSCEEESSCEECCCCCCSHHHHH---------HHHHTTSSCGGGCCCHHHHHH---HHHHHHHHHTCCC--CH-HHHHH
T ss_pred CCCEEEEECCCcccCcCCCChhhc---------ccccCCHHHHHHHHHHHHHHh---CHHHHHHHcCcCC--Cc-HHHHH
Confidence 88999999999998887 666554 223445666777777777765 5678899999984 23 79999
Q ss_pred HHHHHh----cCC--cHHHHHHHHHHHHHcCCCCceeccCCCC
Q 017100 340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPPR 376 (377)
Q Consensus 340 ~~a~~~----~~g--D~~~Aa~~il~d~~~Gklg~~~ld~pp~ 376 (377)
.+|.+. ++| |+++||+.||+||++||||+||||.|+.
T Consensus 208 ~ia~~~g~~~kgg~~d~~~aa~~~l~d~~~g~l~~~~l~~~~~ 250 (262)
T 3cnl_A 208 DFARKRGLLKKGGVPDIERALMLFFTEVAQGKAGRVSFERPED 250 (262)
T ss_dssp HHHHHTTCBCGGGCBCHHHHHHHHHHHHHTTTTCSCCSCCTTC
T ss_pred HHHHHhCCccCCCcccHHHHHHHHHHHHHcCCCCceECCCCcc
Confidence 999874 445 9999999999999999999999998864
No 3
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.97 E-value=1.9e-33 Score=275.70 Aligned_cols=221 Identities=18% Similarity=0.105 Sum_probs=142.5
Q ss_pred hhhcccccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhhcccccCCcEEEEcCCCCCcCCCchHHHHHHHHHH-
Q 017100 39 ASLSSSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK- 115 (377)
Q Consensus 39 ~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~ig~gk~E~~~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~- 115 (377)
+.-..+|+|+..||+|||++| .++|+| +|||+||+|+||+|++....++|+++||++|+|.| .+++++.+.
T Consensus 7 ~~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~~~~~~g~gk~~e~~~~~~~~~v~~~~~l~p~q-----~~~l~~~~~~ 80 (364)
T 2qtf_A 7 FVSKEFEEEAIALVEGANYKVTSIYKLPK-SPNVKFYIQYDKLQQIKNDEEISTLIIFEQLKPRH-----FINIRRELKG 80 (364)
T ss_dssp ECCTTTHHHHHHHHHHTTEEEEEEECCCS-SCBTTTBSCHHHHHHHHTCTTCCEEEESSCCCHHH-----HHHHHHHHTT
T ss_pred eCcHHHHHHHHHHHHHCCCEEEEEEEEcc-CCCCcceechhHHHHHhhccCCCEEEECCCCCHHH-----HHHHHHHhCC
Confidence 333459999999999999999 899998 99999999999998877789999999999999999 999999998
Q ss_pred -HHhhhcCeEEEEEecCCCCCC-C-cHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCch-
Q 017100 116 -DQLKLMDVVIEVRDARIPLST-T-HPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM- 191 (377)
Q Consensus 116 -~~i~~aDlIL~V~Dar~p~~~-~-~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~- 191 (377)
++++++|+||+|||+|++..+ . +++++++.+.+|++ ..|..+++..+. +- ..|.|..
T Consensus 81 ~~v~dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl--------------~~~~~l~~~~~~-i~----~~g~ge~~ 141 (364)
T 2qtf_A 81 KEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPII--------------KETYTKSKIGEQ-QG----PLGAGTYG 141 (364)
T ss_dssp CEEECHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--------------HHC------------------------
T ss_pred CceeehHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh--------------hhhhHHHHhcCC-CC----cCCcCHHH
Confidence 799999999999999999776 4 66777776654432 356554443221 10 1122221
Q ss_pred ------hhhhHHHHhhhhhhh----hhcccCC-CCCce-eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--E
Q 017100 192 ------KLSRLAKALASDVNV----KRRSKGL-LPRAV-RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--W 257 (377)
Q Consensus 192 ------~L~~~l~~l~~~~~~----~~~~~~~-~~~~~-~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~ 257 (377)
.+...+..+...... +...++. ....+ .|+++|+||||||||+|+|++.. ..+++.+|+|++.. .
T Consensus 142 ~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~ 220 (364)
T 2qtf_A 142 VESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYA 220 (364)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEE
Confidence 122222222211111 1111111 11233 49999999999999999999865 57889999999864 3
Q ss_pred EEe-CCceEEEcCCccccCCCCcHHHHHH
Q 017100 258 VRF-GKDLEFLDSPGIIPMRISDQAAAIK 285 (377)
Q Consensus 258 ~~~-~~~~~l~DTPG~i~~~~~~~~~~~~ 285 (377)
+.+ +..+.++||||++...+++..++++
T Consensus 221 i~~~g~~v~l~DT~G~i~~lp~~lve~f~ 249 (364)
T 2qtf_A 221 IPINNRKIMLVDTVGFIRGIPPQIVDAFF 249 (364)
T ss_dssp EEETTEEEEEEECCCBCSSCCGGGHHHHH
T ss_pred EEECCEEEEEEeCCCchhcCCHHHHHHHH
Confidence 444 4568899999998766666655554
No 4
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.91 E-value=1.5e-24 Score=213.10 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCH----HHHHHHHHH-HHHcCC---e
Q 017100 107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATY-FAKQGT---K 178 (377)
Q Consensus 107 ~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~----~~~~~~~~~-~~~~g~---~ 178 (377)
++.+.+.+.++.+++++|++|+|++++.++..+++.+++.++|+++|+||+||++. +....|... +++.|. .
T Consensus 58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~ 137 (369)
T 3ec1_A 58 DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVD 137 (369)
T ss_dssp -CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSE
T ss_pred HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCccc
Confidence 46677777788899999999999999998888889999889999999999999875 345667653 556665 7
Q ss_pred EEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcC-----CceeccCCCCcee
Q 017100 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTR 253 (377)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~-----~~~~v~~~pgtT~ 253 (377)
++++||++|.|+++|.+.+.++.. ..+|+++|.||||||||||+|++. ..+.+++.||||+
T Consensus 138 v~~iSA~~g~gi~~L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~ 203 (369)
T 3ec1_A 138 VCLVSAAKGIGMAKVMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL 203 (369)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE
Confidence 899999999999999887766532 135899999999999999999986 5678899999999
Q ss_pred EEEEEEeCCceEEEcCCccccC
Q 017100 254 VLKWVRFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 254 ~~~~~~~~~~~~l~DTPG~i~~ 275 (377)
+...+.++.++.++|||||..+
T Consensus 204 ~~~~~~~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 204 DMIEIPLESGATLYDTPGIINH 225 (369)
T ss_dssp EEEEEECSTTCEEEECCSCCCC
T ss_pred eeEEEEeCCCeEEEeCCCcCcH
Confidence 9999998888999999999855
No 5
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.90 E-value=4.2e-24 Score=209.73 Aligned_cols=154 Identities=26% Similarity=0.363 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH----HHHHHHHH-HHHcCC---eE
Q 017100 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV 179 (377)
Q Consensus 108 ~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~----~~~~~~~~-~~~~g~---~v 179 (377)
+.+.+.+.++.+.+|+|++|+|++++..+...++.+++.++|+++|+||+||.+.. ....|... +++.|. .+
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 56667777778888899999999998877778888888899999999999998654 45667554 456676 78
Q ss_pred EEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCC------ceeccCCCCcee
Q 017100 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTR 253 (377)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~------~~~v~~~pgtT~ 253 (377)
+++||++|.|+++|.+.+.++.. ..+|+++|+||||||||+|+|++.. ...+++.||||+
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~ 202 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL 202 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred EEEeCCCCcCHHHHHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence 99999999999998887765431 1368999999999999999999752 456899999999
Q ss_pred EEEEEEeCCceEEEcCCccccC
Q 017100 254 VLKWVRFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 254 ~~~~~~~~~~~~l~DTPG~i~~ 275 (377)
+...+.++.++.++|||||..+
T Consensus 203 ~~~~~~~~~~~~liDtPG~~~~ 224 (368)
T 3h2y_A 203 DLIDIPLDEESSLYDTPGIINH 224 (368)
T ss_dssp CEEEEESSSSCEEEECCCBCCT
T ss_pred ceEEEEecCCeEEEeCCCcCcH
Confidence 9999998888999999999865
No 6
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=4e-21 Score=192.80 Aligned_cols=187 Identities=20% Similarity=0.242 Sum_probs=124.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (377)
+..+.+||+........-+......++....++.+|+|++|+|++.+.+..+..+..++. ++|+++|+||+|+.....
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~ 127 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFE 127 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHH
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccH
Confidence 345788998764211000012445566778899999999999999988777777777764 799999999999864312
Q ss_pred HHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCce
Q 017100 165 RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (377)
Q Consensus 165 ~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~ 243 (377)
...+.+++ +.|. .++++||++|.|+.+|.+.+.+..................++|++||.||||||||+|+|++....
T Consensus 128 ~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~ 206 (439)
T 1mky_A 128 REVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERA 206 (439)
T ss_dssp HHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred HHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCccc
Confidence 22223333 4564 788999999999999877665443321100000001234689999999999999999999998878
Q ss_pred eccCCCCceeEEE--EEEe-CCceEEEcCCcccc
Q 017100 244 PAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 274 (377)
Q Consensus 244 ~v~~~pgtT~~~~--~~~~-~~~~~l~DTPG~i~ 274 (377)
.+++.||+|++.. .+.+ +..+.++||||+..
T Consensus 207 ~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 207 LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp EECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred ccCCCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 8999999999864 2333 45688999999853
No 7
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.83 E-value=4e-21 Score=183.63 Aligned_cols=141 Identities=21% Similarity=0.253 Sum_probs=109.2
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH----HHHHHHHHHHcCCeEEEeeCccC
Q 017100 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG 187 (377)
Q Consensus 117 ~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~----~~~~~~~~~~~g~~vi~iSa~~g 187 (377)
.++++|+|++|+|+++|..+.+ .+++++ .+++.++|+||+||+++.+ .+.|.++|++.|++++++|+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 6999999999999999988887 788876 4789999999999998754 68899999888999999999999
Q ss_pred CCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCC-------CceeEEEEEEe
Q 017100 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRF 260 (377)
Q Consensus 188 ~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~ 260 (377)
.|+++|.+..+ ...++++|.+|||||||||+|.+.....++..+ +||++.++++.
T Consensus 162 ~g~~~L~~~~~------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~ 223 (307)
T 1t9h_A 162 DSLADIIPHFQ------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT 223 (307)
T ss_dssp TTCTTTGGGGT------------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred CCHHHHHhhcC------------------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence 99887765421 125899999999999999999987666666555 57777666666
Q ss_pred CCceEEEcCCccccCCC
Q 017100 261 GKDLEFLDSPGIIPMRI 277 (377)
Q Consensus 261 ~~~~~l~DTPG~i~~~~ 277 (377)
. ..+++||||+....+
T Consensus 224 ~-~g~v~dtpg~~~~~l 239 (307)
T 1t9h_A 224 S-GGLVADTPGFSSLEF 239 (307)
T ss_dssp T-TEEEESSCSCSSCCC
T ss_pred C-CEEEecCCCcccccc
Confidence 5 568999999986543
No 8
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=9.6e-21 Score=189.86 Aligned_cols=181 Identities=18% Similarity=0.235 Sum_probs=117.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (377)
+..+.+||+...... ..+..+...++....++.+|++++|+|++++.+..+..+.+++. ++|+++|+||+|+.+...
T Consensus 50 ~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~ 128 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIG-DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA 128 (436)
T ss_dssp SSCCEEEC----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----
T ss_pred CceEEEEECCCCCCc-chhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh
Confidence 456788886543211 00112355566677899999999999999988877777777664 789999999999975421
Q ss_pred HHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCce
Q 017100 165 RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (377)
Q Consensus 165 ~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~ 243 (377)
...+++ +.|. .++++||++|.|+.+|.+.+.+...... ........++|+++|.||||||||+|+|++....
T Consensus 129 --~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~ 201 (436)
T 2hjg_A 129 --NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERV 201 (436)
T ss_dssp --CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred --hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCce
Confidence 111222 4453 7889999999999998877665443211 0011234689999999999999999999998877
Q ss_pred eccCCCCceeEEEE--EEe-CCceEEEcCCccccC
Q 017100 244 PAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 244 ~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i~~ 275 (377)
.+++.+|||++... +.. +..+.|+||||+...
T Consensus 202 ~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 202 IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 236 (436)
T ss_dssp EEC---------CCEEEEETTEEEEETTHHHHTCB
T ss_pred eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcC
Confidence 89999999999632 223 457899999999643
No 9
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=1.4e-19 Score=182.36 Aligned_cols=182 Identities=18% Similarity=0.247 Sum_probs=120.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA 163 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~ 163 (377)
.+..+.+||+..-... -.+.++...++....++.+|+||+|+|++.+....+..+.+++. ++|+++|+||+|+....
T Consensus 69 ~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIG-DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp CSSCCEEECCCC-------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC------
T ss_pred CCceEEEEECCCCCCc-chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh
Confidence 4556778887542110 00114666777778899999999999999888877777877775 78999999999987542
Q ss_pred HHHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCc
Q 017100 164 DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (377)
Q Consensus 164 ~~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~ 242 (377)
..+.+++ ..| ..++++||++|.|+.+|.+.+.+...... ........++|+++|.||||||||+|+|++...
T Consensus 148 --~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~ 220 (456)
T 4dcu_A 148 --ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEER 220 (456)
T ss_dssp -----CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred --hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCc
Confidence 1222222 334 45789999999999988777655432211 011123468999999999999999999998887
Q ss_pred eeccCCCCceeEEE--EEEe-CCceEEEcCCccccC
Q 017100 243 CPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 243 ~~v~~~pgtT~~~~--~~~~-~~~~~l~DTPG~i~~ 275 (377)
..+++.||||++.. .+.. +..+.++||||+...
T Consensus 221 ~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 221 VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256 (456)
T ss_dssp EEECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence 88999999999952 3333 457899999998753
No 10
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.77 E-value=1.5e-18 Score=165.73 Aligned_cols=138 Identities=23% Similarity=0.356 Sum_probs=108.6
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCCeEEEeeCccCC
Q 017100 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (377)
Q Consensus 117 ~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~~~~~~~~~g~~vi~iSa~~g~ 188 (377)
.+.++|++++|+|+++|..+.+ .+++++ .++|.++|+||+||.++.+ ...|.+++++.|+.++++|+++|.
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE 154 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 6899999999999998864443 355554 4789999999999998752 567888888889999999999999
Q ss_pred CchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCC-------ceeEEEEEEeC
Q 017100 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFG 261 (377)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~ 261 (377)
|+++|.+.+. ...++++|.+|||||||+|+|. .....++.... +|+....+...
T Consensus 155 gi~~L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~ 215 (302)
T 2yv5_A 155 GIDELVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG 215 (302)
T ss_dssp THHHHHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET
T ss_pred CHHHHHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC
Confidence 9988765432 1247999999999999999999 76666666554 77776666665
Q ss_pred CceEEEcCCcccc
Q 017100 262 KDLEFLDSPGIIP 274 (377)
Q Consensus 262 ~~~~l~DTPG~i~ 274 (377)
...+++||||+..
T Consensus 216 ~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 216 KGSFVGDTPGFSK 228 (302)
T ss_dssp TTEEEESSCCCSS
T ss_pred CCcEEEECcCcCc
Confidence 5678999999964
No 11
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.76 E-value=1.2e-18 Score=169.63 Aligned_cols=142 Identities=23% Similarity=0.327 Sum_probs=109.9
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCCeEEEeeCcc
Q 017100 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQL 186 (377)
Q Consensus 115 ~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~~~~~~~~~g~~vi~iSa~~ 186 (377)
+.+++++|+|++| |++.|..+.+ .+++++ .+++.++|+||+||++++. .+.|..+|++.|++++++|+.+
T Consensus 125 ~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 125 KPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3457999999965 7788877665 677776 4789999999999998765 6689999999999999999999
Q ss_pred CCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCc-eeccCCC---C----ceeEEEEE
Q 017100 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP---G----VTRVLKWV 258 (377)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~p---g----tT~~~~~~ 258 (377)
+.|++.|...+ . .-.++|+|.+|||||||||+|.+... ..++... | +|+..++.
T Consensus 203 ~~gl~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~ 264 (358)
T 2rcn_A 203 QDGLKPLEEAL----T--------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLY 264 (358)
T ss_dssp TBTHHHHHHHH----T--------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEE
T ss_pred CcCHHHHHHhc----C--------------CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEE
Confidence 99987765432 0 12589999999999999999998766 5555543 3 56666777
Q ss_pred EeCCceEEEcCCccccCC
Q 017100 259 RFGKDLEFLDSPGIIPMR 276 (377)
Q Consensus 259 ~~~~~~~l~DTPG~i~~~ 276 (377)
.+..+..++||||+....
T Consensus 265 ~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 265 HFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp ECTTSCEEEECHHHHTCC
T ss_pred EECCCCEecCcccHHHhh
Confidence 776677899999997643
No 12
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.72 E-value=2.7e-18 Score=163.93 Aligned_cols=142 Identities=22% Similarity=0.357 Sum_probs=103.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCCeEEEeeCccC
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLG 187 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~~~~~~~~~g~~vi~iSa~~g 187 (377)
.+++++|++++|+|++++.++.+ .+.+|+ .+.|+++|+||+||.+... ...|.+.+... ..++++||++|
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg 157 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTG 157 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred cccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCC
Confidence 46899999999999998864432 345554 3789999999999987654 44566555433 78999999999
Q ss_pred CCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCC-------ceeEEEEEEe
Q 017100 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRF 260 (377)
Q Consensus 188 ~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~ 260 (377)
.|++++...+. .-.++++|.+|+|||||+|+|.+.....++.... +|+..+.+++
T Consensus 158 ~gv~~lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~ 219 (301)
T 1u0l_A 158 MGIEELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF 219 (301)
T ss_dssp TTHHHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC
T ss_pred cCHHHHHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEc
Confidence 99888765431 1247999999999999999999876555555443 6665555555
Q ss_pred CCceEEEcCCccccCCC
Q 017100 261 GKDLEFLDSPGIIPMRI 277 (377)
Q Consensus 261 ~~~~~l~DTPG~i~~~~ 277 (377)
....+++||||+....+
T Consensus 220 ~~~g~v~q~p~~~~~~~ 236 (301)
T 1u0l_A 220 DFGGYVVDTPGFANLEI 236 (301)
T ss_dssp TTSCEEESSCSSTTCCC
T ss_pred CCCCEEEECcCCCccCC
Confidence 55668999999976554
No 13
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.56 E-value=1.1e-16 Score=156.20 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=109.1
Q ss_pred cCeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHHHHHHHHHHHH-c-CCeEEEeeCccCCCchhhh
Q 017100 121 MDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLS 194 (377)
Q Consensus 121 aDlIL~V~Dar~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~~~~~~~~~~~-~-g~~vi~iSa~~g~gi~~L~ 194 (377)
+|.+-.|++++.+.++.++.++++. ..++.++++||+|++++...+.|.+|++. . +.....++...+.+..++.
T Consensus 58 ~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (357)
T 2e87_A 58 RDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVA 137 (357)
T ss_dssp HHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 3455567788888788888887776 67888899999999999999999999876 3 4333223333333444444
Q ss_pred hHHHHhhhh-------hhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCce
Q 017100 195 RLAKALASD-------VNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDL 264 (377)
Q Consensus 195 ~~l~~l~~~-------~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~ 264 (377)
+.++++... ....++.++......+|+++|+||||||||+|+|++.. ..+++.||+|++.+...+ +..+
T Consensus 138 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~ 216 (357)
T 2e87_A 138 SVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRY 216 (357)
T ss_dssp HHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceE
Confidence 433333221 11112222222456789999999999999999999865 678889999999876654 2358
Q ss_pred EEEcCCccccCCCC
Q 017100 265 EFLDSPGIIPMRIS 278 (377)
Q Consensus 265 ~l~DTPG~i~~~~~ 278 (377)
.++||||+.....+
T Consensus 217 ~l~Dt~G~~~~~~~ 230 (357)
T 2e87_A 217 QIIDTPGLLDRPIS 230 (357)
T ss_dssp EEEECTTTSSSCST
T ss_pred EEEeCCCccccchh
Confidence 99999999865443
No 14
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.3e-13 Score=134.95 Aligned_cols=58 Identities=38% Similarity=0.591 Sum_probs=49.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-CCceEEEcCCccccC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i~~ 275 (377)
..+|+|||+||||||||+|+|++.+ +.+++.||||++... +.. +..+.++||||++..
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 4689999999999999999999865 789999999999754 333 567999999999864
No 15
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.03 E-value=6.5e-11 Score=119.52 Aligned_cols=59 Identities=31% Similarity=0.400 Sum_probs=29.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i~ 274 (377)
..++|+++|+||||||||+|+|++.+...+++.||||++... +.+ +..+.++||||+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 357899999999999999999998877789999999999743 334 44689999999964
No 16
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.03 E-value=3.8e-11 Score=121.36 Aligned_cols=57 Identities=39% Similarity=0.566 Sum_probs=49.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~~~l~DTPG~i 273 (377)
.++|+++|+||||||||+|+|++.+...+++.||||++.. .+.+ +..+.++||||+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 5789999999999999999999887778999999999963 3344 4568999999997
No 17
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.98 E-value=1.2e-10 Score=116.58 Aligned_cols=56 Identities=38% Similarity=0.574 Sum_probs=35.1
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE--Ee-CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~~~l~DTPG~i~ 274 (377)
+|++||.||||||||+|+|++.+.+.+++.||+|++.... .. +..+.++||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 6999999999999999999988767789999999996432 33 45789999999864
No 18
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.98 E-value=2.3e-10 Score=105.65 Aligned_cols=60 Identities=27% Similarity=0.247 Sum_probs=42.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCC-CceeEEEEEEe---CCceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p-gtT~~~~~~~~---~~~~~l~DTPG~i~~ 275 (377)
..++|++||.||||||||+|+|++.+...++..+ |+|++.+.... +..+.++||||+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 4689999999999999999999987755544443 58877654332 457899999999743
No 19
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.97 E-value=2.9e-10 Score=108.24 Aligned_cols=58 Identities=40% Similarity=0.599 Sum_probs=47.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE--Ee-CCceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~~~l~DTPG~i~~ 275 (377)
.+|++||.||||||||+|+|++.+...+++.|+||++.... .. +..+.++||||+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 46999999999999999999998877788999999985332 12 446889999999754
No 20
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.96 E-value=4.5e-10 Score=105.30 Aligned_cols=59 Identities=31% Similarity=0.503 Sum_probs=49.3
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~ 276 (377)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+-...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 4689999999999999999999876 789999999998654332 5678999999997543
No 21
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.95 E-value=4.7e-10 Score=98.31 Aligned_cols=61 Identities=33% Similarity=0.588 Sum_probs=43.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC-ceeccCCCCceeEEEEEEeCCceEEEcCCccccCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~~~ 276 (377)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++...+.++..+.++||||+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence 35789999999999999999999765 45678889999999888888899999999986543
No 22
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.93 E-value=1.7e-09 Score=94.30 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=53.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCccccCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~~~ 276 (377)
..++|+++|.+|||||||+|+|++.....+++.+|+|++......+..+.++||||+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAK 82 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCcccc
Confidence 3468999999999999999999987766788899999999888888899999999986543
No 23
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.92 E-value=4.5e-10 Score=100.82 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=51.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC-ceeccCCCCceeEEEEEEeC----CceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~----~~~~l~DTPG~i~~ 275 (377)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++.....+. ..+.|+||||+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 35689999999999999999999876 45788999999998776664 67999999998654
No 24
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.91 E-value=7e-10 Score=96.10 Aligned_cols=58 Identities=31% Similarity=0.471 Sum_probs=47.3
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeC-CceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-KDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-~~~~l~DTPG~i~ 274 (377)
..+|+++|.||||||||+|+|++.....+++.||+|++.. .+.++ ..+.++||||+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 4689999999999999999999876556788999998753 34444 3688999999964
No 25
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.91 E-value=1.2e-10 Score=117.16 Aligned_cols=59 Identities=36% Similarity=0.510 Sum_probs=44.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEe-CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~~~l~DTPG~i~ 274 (377)
..++|+++|+||||||||+|+|++.....+++.||||++.. .+.+ +..+.++||||+..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 35789999999999999999999877777999999999963 3333 45689999999954
No 26
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.91 E-value=6.6e-10 Score=105.94 Aligned_cols=60 Identities=38% Similarity=0.594 Sum_probs=49.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e--CCceEEEcCCccccCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F--GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~--~~~~~l~DTPG~i~~~ 276 (377)
+-.|+++|.||||||||+|+|++.+...+++.|++|++..... . +..+.++||||+..+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 3479999999999999999999988777899999999854322 2 3468999999998654
No 27
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.91 E-value=1.1e-09 Score=101.64 Aligned_cols=57 Identities=32% Similarity=0.441 Sum_probs=47.6
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e-CCceEEEcCCccccCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~l~DTPG~i~~~ 276 (377)
+|+++|.||||||||+|+|++.. ..+++.||+|.+..... . +..+.++||||+-...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 69999999999999999999865 78999999998865433 3 4468899999997554
No 28
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.89 E-value=3.9e-10 Score=112.65 Aligned_cols=57 Identities=37% Similarity=0.539 Sum_probs=34.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
.+|++||.||||||||+|+|++.....+++.||+|++.....+ +..+.++||||+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 4799999999999999999998777778999999999776554 45789999999964
No 29
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.86 E-value=2e-09 Score=100.34 Aligned_cols=60 Identities=27% Similarity=0.388 Sum_probs=49.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~ 275 (377)
..++|+++|.+|||||||+|+|++.....+++.+++|.+...+.+ +..+.++||||+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 357999999999999999999998776678888999987655443 346899999999754
No 30
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.85 E-value=1.8e-09 Score=98.58 Aligned_cols=63 Identities=24% Similarity=0.396 Sum_probs=42.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCC--CceeEEEEEE--e-CCceEEEcCCccccCCCCc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVR--F-GKDLEFLDSPGIIPMRISD 279 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~--~-~~~~~l~DTPG~i~~~~~~ 279 (377)
..++|+++|.+|||||||+|+|++... ..+..+ ++|++..... . +..+.|+||||+......+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~ 95 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN 95 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----C
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH
Confidence 457999999999999999999998664 445555 7888765433 3 4578999999998654433
No 31
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.85 E-value=2.3e-09 Score=99.66 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=49.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~ 276 (377)
..++|+++|.+|||||||+|+|++.....+++.+++|.+.....+ +..+.|+||||+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 357999999999999999999998876678888999887654433 4478999999997543
No 32
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.84 E-value=1.5e-09 Score=103.14 Aligned_cols=56 Identities=32% Similarity=0.456 Sum_probs=46.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-CCceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i 273 (377)
..|+++|.||||||||+|+|++.+...+++.|++|++... +.. +..+.++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 4699999999999999999999877778899999987432 222 3468899999986
No 33
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.84 E-value=3.1e-09 Score=98.72 Aligned_cols=60 Identities=37% Similarity=0.527 Sum_probs=49.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccCCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 277 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~~ 277 (377)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+-....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 4689999999999999999999765 568999999998755433 34789999999975443
No 34
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.83 E-value=3.3e-09 Score=99.41 Aligned_cols=59 Identities=37% Similarity=0.484 Sum_probs=48.8
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe--CCceEEEcCCccccCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~--~~~~~l~DTPG~i~~~ 276 (377)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||.-...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccC
Confidence 4689999999999999999999764 678999999998655444 4578999999986543
No 35
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.82 E-value=2.3e-09 Score=110.47 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=42.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCce----eEEEEE------EeCCceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT----RVLKWV------RFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT----~~~~~~------~~~~~~~l~DTPG~i~~ 275 (377)
...+|+|||.||||||||||+|+|..... +.+|+| +.+... ..+..+.|+||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 35689999999999999999999876421 444444 444221 12467999999999854
No 36
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.82 E-value=2e-09 Score=108.10 Aligned_cols=58 Identities=36% Similarity=0.528 Sum_probs=38.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
..+|++||.||||||||+|+|++.....+++.||+|++.....+ +..+.++||||+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~ 83 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 83 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC---
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC
Confidence 35799999999999999999998877778999999999876665 45799999999873
No 37
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=9.6e-10 Score=107.00 Aligned_cols=57 Identities=40% Similarity=0.533 Sum_probs=41.5
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeC------------------CceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~------------------~~~~l~DTPG~i~~ 275 (377)
++|++||.||||||||+|+|++.. +.+++.||+|.+... +.+. ..+.++||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 579999999999999999999866 788999999988542 2222 35899999999753
No 38
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=1.1e-09 Score=108.24 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=29.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE----E-------------------eC----CceEEEcCC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV----R-------------------FG----KDLEFLDSP 270 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~----~-------------------~~----~~~~l~DTP 270 (377)
++|++||.||||||||+|+|++.+ +.+++.||||++.... . ++ ..+.++|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 369999999999999999999876 7889999999875321 1 01 247899999
Q ss_pred cccc
Q 017100 271 GIIP 274 (377)
Q Consensus 271 G~i~ 274 (377)
|+..
T Consensus 80 G~~~ 83 (397)
T 1wxq_A 80 GLVP 83 (397)
T ss_dssp ----
T ss_pred Cccc
Confidence 9974
No 39
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.80 E-value=2.9e-09 Score=98.39 Aligned_cols=61 Identities=18% Similarity=0.351 Sum_probs=47.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCC-ceeEEEE--EEe-CCceEEEcCCccccCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKW--VRF-GKDLEFLDSPGIIPMR 276 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg-tT~~~~~--~~~-~~~~~l~DTPG~i~~~ 276 (377)
..++|+|+|.||||||||+|+|++.....++..|+ +|++... ... +..+.++||||+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 35789999999999999999999877566666666 7877543 222 4579999999998654
No 40
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.80 E-value=3.4e-09 Score=99.09 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=38.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccC-------CCCceeEEEEEEe--CC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRF--GK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~-------~pgtT~~~~~~~~--~~---~~~l~DTPG~i 273 (377)
..++|++||.||||||||+|+|++.+...... .++++.+.....+ ++ .+.++||||+-
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 35789999999999999999999776544332 3444445444443 22 68999999994
No 41
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.80 E-value=5.3e-09 Score=97.56 Aligned_cols=61 Identities=33% Similarity=0.435 Sum_probs=49.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccccCCCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRIS 278 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~~~~~ 278 (377)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+......
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 66 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAH 66 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccC
Confidence 3689999999999999999999875 488999999998654333 446899999999754443
No 42
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.79 E-value=3.1e-09 Score=92.37 Aligned_cols=56 Identities=36% Similarity=0.526 Sum_probs=48.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~~ 275 (377)
++|+++|.+|||||||+|+|.+.. ..++..||+|.+...+... .+.++||||+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCcccc
Confidence 479999999999999999999764 6778889999988877766 8999999998543
No 43
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.77 E-value=3.6e-09 Score=93.90 Aligned_cols=59 Identities=24% Similarity=0.443 Sum_probs=39.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC-ceeccCCCCceeEEEEEEeCCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~ 274 (377)
...+|+++|.+|||||||+|+|++.. ...+.+.+|+|+....+.++.++.++||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 35689999999999999999999865 455678899998876666656889999999864
No 44
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.76 E-value=5.8e-09 Score=102.57 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=49.5
Q ss_pred CCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeC------------------CceEEEcCCcccc
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIP 274 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~------------------~~~~l~DTPG~i~ 274 (377)
....++++||.||||||||+|+|++...+.+++.||||++.. .+.+. ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 346789999999999999999999877558999999998853 23333 2478999999985
Q ss_pred C
Q 017100 275 M 275 (377)
Q Consensus 275 ~ 275 (377)
.
T Consensus 98 ~ 98 (392)
T 1ni3_A 98 G 98 (392)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76 E-value=5.8e-09 Score=91.01 Aligned_cols=125 Identities=16% Similarity=0.009 Sum_probs=72.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D 158 (377)
....+.+||.... ..........+..+|++++|+|+.++.+..+.. +..+. .+.|+++|+||+|
T Consensus 62 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 132 (195)
T 1x3s_A 62 NKAKLAIWDTAGQ---------ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132 (195)
T ss_dssp EEEEEEEEEECSS---------GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred eEEEEEEEeCCCc---------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence 3456788886543 222233456789999999999998764332211 22222 2568899999999
Q ss_pred CCCHHH-HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcch
Q 017100 159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 232 (377)
Q Consensus 159 L~~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSS 232 (377)
+..... ......+....+..++.+|+++|.|++++.+.+.+....... ..--+.+|+||||
T Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~-------------~~~~~~~n~gkSs 194 (195)
T 1x3s_A 133 KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG-------------LWESENQNSGPSS 194 (195)
T ss_dssp SSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGG-------------GTCC---------
T ss_pred CcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhh-------------hhcccccCCCCCC
Confidence 954321 223334555677889999999999999887766554322111 0112445999997
No 46
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.76 E-value=3e-09 Score=104.52 Aligned_cols=60 Identities=32% Similarity=0.385 Sum_probs=34.1
Q ss_pred CCceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe------------------CCceEEEcCCcccc
Q 017100 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF------------------GKDLEFLDSPGIIP 274 (377)
Q Consensus 215 ~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~------------------~~~~~l~DTPG~i~ 274 (377)
....+|++||.||||||||+|+|++.+ +.+++.||+|.+... +.+ ...+.++||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 345789999999999999999999865 488999999987532 222 22489999999986
Q ss_pred C
Q 017100 275 M 275 (377)
Q Consensus 275 ~ 275 (377)
.
T Consensus 99 ~ 99 (396)
T 2ohf_A 99 G 99 (396)
T ss_dssp -
T ss_pred c
Confidence 4
No 47
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.74 E-value=8.5e-09 Score=88.29 Aligned_cols=57 Identities=32% Similarity=0.563 Sum_probs=40.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEe-CCceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~~~l~DTPG~i~~ 275 (377)
.+|+++|.+|||||||+|+|++.. ..++..||+|.+.. .+.. +..+.++||||....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 579999999999999999999754 45678899887743 2333 346889999998754
No 48
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.71 E-value=2.3e-08 Score=86.83 Aligned_cols=58 Identities=31% Similarity=0.540 Sum_probs=46.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e-CCceEEEcCCccccC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~l~DTPG~i~~ 275 (377)
.++|+++|.+|||||||+|+|++.. ..++..||+|.+..... . +..+.++||||....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 4689999999999999999999754 57788899998765433 3 446889999998654
No 49
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.71 E-value=1.3e-08 Score=87.13 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=40.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCC---ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|.+.......+.+|+|.....+.++. .+.++||||.-.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 5789999999999999999999876556667788887666666644 467999999854
No 50
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.71 E-value=5.3e-09 Score=88.24 Aligned_cols=57 Identities=47% Similarity=0.589 Sum_probs=37.9
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
.+|+++|.+|||||||+|+|.+.....+++.+++|.+.....+ +..+.++||||...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 4799999999999999999998765567888999988654433 45689999999975
No 51
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.71 E-value=3.2e-09 Score=103.00 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
....|+|+|+||||||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
No 52
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.70 E-value=3.7e-09 Score=99.34 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCce-----eccCCCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~-----~v~~~pg 250 (377)
..++|+++|.||||||||+|+|++.... .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 3568999999999999999999987643 3455565
No 53
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.70 E-value=1e-08 Score=92.78 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=42.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|++.. ..+++.+++|++...... +..+.++||||+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 45789999999999999999999765 457788999998765433 34688999999964
No 54
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.65 E-value=4.8e-09 Score=101.53 Aligned_cols=56 Identities=30% Similarity=0.456 Sum_probs=46.4
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeC--CceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~~~l~DTPG~i~ 274 (377)
.+|+|||+||||||||||+|++.+ ..+++.|++|.+... +.++ ..+.++||||++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 368999999999999999999754 577899999998653 3443 5789999999975
No 55
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.65 E-value=1.9e-08 Score=97.49 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=27.5
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce-----eccCCCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~-----~v~~~pg 250 (377)
.++|++||.||||||||+|+|++.+.. .++..|+
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 468999999999999999999987643 3445565
No 56
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.64 E-value=1.8e-07 Score=83.65 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=78.1
Q ss_pred cCCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhh---cCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh-~~~~~k~l~~~i~~---aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL 159 (377)
.+..+.+||+..-...-.+.. .......+...+.. +|++++|+|++.+....+..+..++. +.|+++|+||+|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 356788999765321111111 23344444455555 88899999999876655555555553 6899999999999
Q ss_pred CCHHHHHHH----HHHHHH-------cCCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 160 ISMADRNAW----ATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 160 ~~~~~~~~~----~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
.+..+.... .+.+.. .+..++++|+++|.|+.+|.+.+.+...
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 157 LTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred CChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 987654332 233333 3467899999999999999887766543
No 57
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.63 E-value=2.6e-08 Score=94.46 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~ 242 (377)
..++|+++|.||||||||+|+|++...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 346899999999999999999998764
No 58
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.62 E-value=3.1e-08 Score=84.06 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=44.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc-eeccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
+.++|+++|.+|||||||+|+|.+... ....+..|+|.....+.... .+.++||||.-
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 357899999999999999999997652 23455667777666655543 57899999984
No 59
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.59 E-value=3.1e-08 Score=84.03 Aligned_cols=58 Identities=26% Similarity=0.155 Sum_probs=34.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCC--ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK--DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~--~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|.+.....+.+.+|+|.......-+. .+.++||||.-.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence 3689999999999999999999877667778889888644322222 467899999753
No 60
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.58 E-value=1e-08 Score=100.11 Aligned_cols=57 Identities=39% Similarity=0.509 Sum_probs=45.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EE----------------------eCCceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VR----------------------FGKDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~----------------------~~~~~~l~DTPG~i 273 (377)
++|++||.||||||||+|+|++.. +.+++.||+|.+... .. .+..+.++||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 368999999999999999999764 678899999886422 21 23468999999998
Q ss_pred cC
Q 017100 274 PM 275 (377)
Q Consensus 274 ~~ 275 (377)
..
T Consensus 81 ~~ 82 (368)
T 2dby_A 81 KG 82 (368)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 61
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.53 E-value=5.3e-08 Score=99.99 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=33.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCce--eccCCCCceeEE
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL 255 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~--~v~~~pgtT~~~ 255 (377)
..++|+++|.+|||||||||+|++.+.. .++..|+||+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~ 105 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV 105 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE
Confidence 3578999999999999999999987654 588889887743
No 62
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.53 E-value=9.1e-07 Score=76.72 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=75.4
Q ss_pred CCcEEEEcCCC-CCcCCCchHHHHHHHHHHHHhhh---cCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSL-RPVQWYPGHIAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L-~~~qw~PGh~~~~~k~l~~~i~~---aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~ 160 (377)
+..+.+||... ....|-..............+.. +|+++.|+|+..+.......+..++. +.|+++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 45678888764 22233333334444444455554 49999999998766555555555543 78999999999998
Q ss_pred CHHHHHHHH----HHHHHcC-CeEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMADRNAWA----TYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~~~~~~----~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+..+..... +.+...+ ..++.+|+++|.|++++.+.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 191 (195)
T 3pqc_A 147 KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTL 191 (195)
T ss_dssp CGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHH
Confidence 765443332 2333323 689999999999999987776554
No 63
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.50 E-value=4.5e-08 Score=97.25 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=38.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CC-ceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~~~l~DTPG~i~~ 275 (377)
..++|+++|.+|||||||+|+|++.....+++.+|+|.+.....+ +. .+.++||||+...
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 357899999999999999999998776678899999998654333 22 7899999999753
No 64
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.50 E-value=8.8e-08 Score=81.12 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=41.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+.... ...+..|++.....+.++. .+.++||||.-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 468999999999999999999975422 2234445555555555543 57899999964
No 65
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.50 E-value=1e-07 Score=100.54 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=32.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgt 251 (377)
..++|+++|.||||||||+|+|++...+.++..|+|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 367899999999999999999999887888888888
No 66
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.50 E-value=1.5e-07 Score=97.48 Aligned_cols=138 Identities=17% Similarity=0.114 Sum_probs=90.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH-hcCCCeEEEEEccCCCCHH--
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW-LGNRKRILVLNREDMISMA-- 163 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~-l~~k~~ilVlNK~DL~~~~-- 163 (377)
..+.+||+ ||| ..+..++...+..+|.+++|+|+.++....... +... ..+.|+++|+||+|+.+..
T Consensus 71 ~~l~liDT--------PGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~ 141 (599)
T 3cb4_D 71 YQLNFIDT--------PGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPE 141 (599)
T ss_dssp EEEEEEEC--------CCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHH
T ss_pred EEEEEEEC--------CCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHH
Confidence 44556774 565 455666778899999999999998876543322 2222 2478999999999997632
Q ss_pred -HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeec---CCCCcchhhhhhhc
Q 017100 164 -DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY---PNVGKSSLINRLLK 239 (377)
Q Consensus 164 -~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~---pNvGKSSLiN~L~~ 239 (377)
..+.|.+.+.-....++++|+++|.|+++|.+.+.+...... +....+++..++.. +++|+.++++-+.|
T Consensus 142 ~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~------~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG 215 (599)
T 3cb4_D 142 RVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE------GDPEGPLQALIIDSWFDNYLGVVSLIRIKNG 215 (599)
T ss_dssp HHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC------CCTTSCCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred HHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc------ccccCCceeeeeeccccccccEEEEEEEEeC
Confidence 223343332111124899999999999998777655433211 11223555555555 89999999999886
Q ss_pred C
Q 017100 240 R 240 (377)
Q Consensus 240 ~ 240 (377)
.
T Consensus 216 ~ 216 (599)
T 3cb4_D 216 T 216 (599)
T ss_dssp C
T ss_pred E
Confidence 4
No 67
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.49 E-value=1.3e-07 Score=79.58 Aligned_cols=55 Identities=22% Similarity=0.278 Sum_probs=37.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+.... .....++.+. ..+.++. .+.++||||.-
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 468999999999999999999965422 2223333332 2333333 37899999964
No 68
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.49 E-value=3.4e-08 Score=84.77 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=43.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i 273 (377)
+.++|+++|.+|||||||+|+|++.. ......+++|.+... +.. +..+.++||||.-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 45789999999999999999999754 455566777766432 233 4568899999974
No 69
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.48 E-value=6.5e-08 Score=84.43 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=36.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCce--eccCCCCceeEEEEEEeCCceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~--~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~~ 275 (377)
..++|+++|.+|||||||+|+|.+.... .++..|++|.+. .+..+.++||||....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL 104 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchH
Confidence 4678999999999999999999976421 123445555443 2457889999999643
No 70
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=1.1e-07 Score=83.34 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=45.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc-eeccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++... ....+.+|+|.....+.++. .+.++||||.-
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 357899999999999999999997652 24566778887776666532 57899999964
No 71
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.47 E-value=6.6e-08 Score=91.95 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=46.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe----CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~l~DTPG~i 273 (377)
.++|+++|.||||||||+|+|++.....+++.+|+|.+.....+ +-.+.++||||.-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 46899999999999999999987655667788999998765433 2357899999974
No 72
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.47 E-value=1.3e-07 Score=80.12 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=42.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCcee-ccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++..... ..+..|++.....+.++. .+.++||||.-
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35789999999999999999999654222 234456666555555543 57899999974
No 73
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=1.5e-07 Score=80.72 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=41.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.........|.++.+.. .+.++. .+.++||||.-
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 45789999999999999999999765433444565555543 233443 57899999964
No 74
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.46 E-value=1.2e-07 Score=80.61 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=38.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.......+..|.+. ..+.. +..+.++||||.-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECCEEEEEEECCCCh
Confidence 45789999999999999999998765333223233222 22223 4468899999974
No 75
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.44 E-value=1.4e-07 Score=80.88 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=41.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. ......|++|.+.. .+..+. .+.++||||.-
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 45799999999999999999999754 34555666666643 344443 47889999964
No 76
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.44 E-value=1.3e-06 Score=76.12 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhc---CeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLM---DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh-~~~~~k~l~~~i~~a---DlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~ 161 (377)
..+.+||...-...-.+.. .......+...+..+ |++++|+|+..+.+..+..+.+++. +.|+++|+||+|+.+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 3678888754211101111 234444445556555 9999999998876665555555543 789999999999988
Q ss_pred HHHHHHHHHHHHH-----cCCeEEEeeCccCCCchhhhhHHHH
Q 017100 162 MADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 162 ~~~~~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
..+.....+.+.+ .+..++++|+++|.|++++.+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 191 (195)
T 1svi_A 149 KGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191 (195)
T ss_dssp GGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHH
Confidence 7654332222221 2468899999999999988776654
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.44 E-value=1.4e-07 Score=84.44 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=46.2
Q ss_pred CceeeeEeecCCCCcchhhhhhh-cCCceeccCCCCceeEEEEEEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~-~~~~~~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+++ +.......+.+|+|.....+.+.. .+.++||||.-.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 45799999999999999999955 433445678889998877766643 578999999743
No 78
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.44 E-value=8.1e-07 Score=84.46 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=81.4
Q ss_pred CCcEEEEcCCCCCc--CCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHHhc--CCCeEEEEEccCCC-
Q 017100 87 DADLYYWTKSLRPV--QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMI- 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~--qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l-~~~l~--~k~~ilVlNK~DL~- 160 (377)
+..+++||+..... .|.. ..+...+.....+..+|++++|+|+..+.+..+..+ .+.+. +.|+++|+||+|+.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~-l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDV-LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG 136 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCH-HHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSS
T ss_pred CCeEEEEECcCCCccccchh-HHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 66788999765421 1111 123444555678999999999999988766655444 44443 68999999999998
Q ss_pred CHHHHHHHHHHHHHc-C--CeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 161 SMADRNAWATYFAKQ-G--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~-g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
+......+.+.+.+. + ..++++||++|.|+++|.+.+.+...
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 137 PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 666555555555443 3 67999999999999998887766543
No 79
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.43 E-value=5.7e-07 Score=88.70 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-HH---HHHHhcCCCeEEEEEccCCCCHH
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL---MDQWLGNRKRILVLNREDMISMA 163 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~-~~---l~~~l~~k~~ilVlNK~DL~~~~ 163 (377)
..+.+||+ ||| +.+.+.+...+..+|++++|+|++.+....+ .+ +...+..+|+++|+||+|+.+.+
T Consensus 75 ~~~~iiDt--------PGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 75 RRISFIDA--------PGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp EEEEEEEC--------CCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred ceEEEEEC--------CCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH
Confidence 45778885 454 5667777788999999999999998653222 11 12223356899999999999876
Q ss_pred HHHHHHHHHHH----c---CCeEEEeeCccCCCchhhhhHHHHh
Q 017100 164 DRNAWATYFAK----Q---GTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 164 ~~~~~~~~~~~----~---g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+...+.+.+.+ . +.+++++||++|.|+..|.+.+.+.
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 146 EALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 55444333322 1 4679999999999999998887764
No 80
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.43 E-value=1.9e-07 Score=79.79 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=41.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCcee-ccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+..... .....|.+.....+.++. .+.++||||.-
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 35789999999999999999999755221 223334454455555543 57899999964
No 81
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.43 E-value=2.2e-07 Score=79.57 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=38.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. ......|.++.+ ...+.++. .+.++||||.-
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 35789999999999999999999654 233333444333 33444444 57899999963
No 82
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.42 E-value=1.3e-07 Score=82.20 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=41.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.....+.+..|.+.....+. +..+.++||||.-
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~-~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ-GFKLNVWDIGGQR 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEET-TEEEEEEECSSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEEC-CEEEEEEECCCCH
Confidence 45789999999999999999999775444555666553322211 4468899999974
No 83
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.42 E-value=2.4e-07 Score=80.01 Aligned_cols=56 Identities=23% Similarity=0.211 Sum_probs=39.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeCC---ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|.+.. .....+++|.+... +.++. .+.++||||.-.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 5789999999999999999999754 34555566655432 23332 256799999653
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.40 E-value=1.8e-07 Score=80.96 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=42.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.......+..|.+.....+ -+..+.++||||.-
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQE 76 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEE-TTEEEEEEEESSSG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEE-CCEEEEEEECCCCH
Confidence 3578999999999999999999976655566666755432221 24468899999984
No 85
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.40 E-value=1.7e-07 Score=80.78 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=39.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|++.......+..|.+.. .+.. +..+.++||||...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETTEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEECCEEEEEEECCCCHh
Confidence 457899999999999999999996654455555564432 2333 45688999999854
No 86
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.40 E-value=2.8e-07 Score=80.45 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=41.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceec-cCCCCceeEEEEEEeC---CceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~---~~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|++...... ....|++.....+.++ ..+.++||||.-.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 457999999999999999999997653222 2223444444444443 2578999999853
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.40 E-value=1.9e-07 Score=80.90 Aligned_cols=56 Identities=23% Similarity=0.381 Sum_probs=38.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.......+..|.+. ..+.. +..+.++||||.-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEECCEEEEEEECCCCH
Confidence 35789999999999999999999765222333334332 22223 3468899999973
No 88
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.39 E-value=3.2e-07 Score=77.56 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=39.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|.+.. ......|.++.+. ..+.++. .+.++||||.-.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 35789999999999999999999754 2222233333332 3333333 578999999754
No 89
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.39 E-value=3.4e-07 Score=77.15 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=37.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+.. .....++++.+.. .+.++. .+.++||||.-
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc--cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 4689999999999999999999754 2333444444332 233433 57899999964
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.39 E-value=2.3e-07 Score=80.68 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=39.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|.+.......+..|.+.....+ -+..+.++||||.-.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQES 72 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEE-TTEEEEEEECCC---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEE-CCEEEEEEECCCCHh
Confidence 3578999999999999999999966544555555544322211 144688999999853
No 91
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.39 E-value=1.7e-07 Score=81.97 Aligned_cols=109 Identities=15% Similarity=0.055 Sum_probs=72.5
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc------------CCC
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG------------NRK 149 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l~------------~k~ 149 (377)
...+..+.+||.... .+........+..+|++++|+|+.++.+..+. .+..++. +.|
T Consensus 59 ~~~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 129 (199)
T 4bas_A 59 EKGRVAFTVFDMGGA---------KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP 129 (199)
T ss_dssp EETTEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC
T ss_pred EeCCEEEEEEECCCC---------HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC
Confidence 345667888986554 22233344668899999999999876543221 2333322 679
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH------HHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 150 RILVLNREDMISMADRNAWATYF------AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 150 ~ilVlNK~DL~~~~~~~~~~~~~------~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+++|+||+|+.+......+.+.+ +..+..++.+|+++|.|++++.+.+.+..
T Consensus 130 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 130 FLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 99999999998763333332222 33456889999999999999877765543
No 92
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.38 E-value=3.8e-07 Score=79.34 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=41.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+.... .+.++||||.-
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 3579999999999999999999975422 1233445555555444432 57899999964
No 93
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.38 E-value=2.5e-07 Score=80.46 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=72.3
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH----HHHHHh-------cCCCeEEEE
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL-------GNRKRILVL 154 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~----~l~~~l-------~~k~~ilVl 154 (377)
....+.+||...... ........++.+|++++|+|+.++....+. .+..++ .+.|+++|.
T Consensus 72 ~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~ 142 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVF---------YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142 (198)
T ss_dssp CEEEEEEEECCSCCS---------CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEE
T ss_pred CceEEEEEeCCChHH---------HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEE
Confidence 445688999765422 223344578999999999999854222221 233332 367999999
Q ss_pred EccCCCCHHHHHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHh
Q 017100 155 NREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 155 NK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
||+|+.+....+...+++...+. .++.+|+++|.|++++.+.+.+.
T Consensus 143 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 143 NKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp ECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred EchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHH
Confidence 99999765434444455566677 89999999999999887665543
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.38 E-value=2.3e-07 Score=80.72 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=39.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.......+..|.+. ..+.. +..+.++||||.-
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEETTEEEEEEEECCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEECCEEEEEEECCCCH
Confidence 35789999999999999999998655443333334332 22222 3468899999974
No 95
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.38 E-value=3.2e-07 Score=77.85 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=39.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. ......|.++.+. ..+.++. .+.++||||.-
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999999654 2333444444443 3344433 46788999963
No 96
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.38 E-value=2.3e-07 Score=81.66 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=37.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc-eeccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++... ....+..|++.....+.++. .+.++||||.-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 357899999999999999999997542 23344556665555555543 47899999964
No 97
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.38 E-value=2.5e-07 Score=78.35 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=37.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|.+.. ......|.++.+.. .+.++. .+.++||||.-.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 4689999999999999999999654 33444555554443 344433 478899999754
No 98
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.38 E-value=2.9e-07 Score=79.02 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=40.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceec-cCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++...... ....|++.....+.+.. .+.++||||.-
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 357899999999999999999997543221 12234444444444433 57899999964
No 99
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.38 E-value=5.1e-08 Score=84.06 Aligned_cols=119 Identities=13% Similarity=-0.060 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL 159 (377)
...+.+||...... ........+..+|.++.|+|+.++.+.... ++.... .+.|+++|+||+|+
T Consensus 53 ~~~~~l~Dt~G~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 53 EYHLQLVDTAGQDE---------YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp EEEEEEEECCCCCT---------TCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred EEEEEEEeCCCchh---------hhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 35667888755321 111122457889999999999875433221 111121 26799999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcch
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 232 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSS 232 (377)
.+... .....++.+..+..++.+|+++|.|+.++.+.+.+.... .-|..++||||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~------------------~~~~~~~gkss 180 (181)
T 3t5g_A 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK------------------MDGACSQGKSS 180 (181)
T ss_dssp TTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT------------------C-----CCBSC
T ss_pred hhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH------------------hcCCcccCcCC
Confidence 64321 123334455667889999999999998887665443221 12567889987
No 100
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.37 E-value=5.2e-07 Score=76.13 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=69.8
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D 158 (377)
.+..+.+||.... ..........+..+|++++|+|+.++.+..+ ..+..++. +.|+++|+||+|
T Consensus 42 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 42 KNISFTVWDVGGQ---------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp SSCEEEEEECCCC---------GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CCEEEEEEEcCCC---------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcC
Confidence 4567889996554 2233444567899999999999987643322 12333332 678999999999
Q ss_pred CCCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.+....+.+.+.+. ..+..++.+|+++|.|++++.+.+.+
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (164)
T 1r8s_A 113 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158 (164)
T ss_dssp STTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence 976533333333322 12346889999999999988776654
No 101
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.36 E-value=4.3e-07 Score=95.96 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=37.7
Q ss_pred eCccCCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCceecc
Q 017100 183 NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA 246 (377)
Q Consensus 183 Sa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~ 246 (377)
++..+.|++++...+.++......... +..-..++|++||.+|+|||||+|+|+|.....++
T Consensus 19 ~~~~~~~~~~li~~inkl~d~l~~lg~--~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g 80 (772)
T 3zvr_A 19 SHMGNRGMEDLIPLVNRLQDAFSAIGQ--NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRG 80 (772)
T ss_dssp ------CGGGHHHHHHHHHHHHHTTTC--CGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCS
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCc--cccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcC
Confidence 344467788887777666543322111 11123568999999999999999999986543333
No 102
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.36 E-value=3.7e-07 Score=78.00 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=40.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|++.. ......|.++.+.. .+.++. .+.++||||.-
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 4789999999999999999999654 33444555555543 333443 57899999964
No 103
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.36 E-value=4e-07 Score=79.27 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=39.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCC--CceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+... .....+ |++.....+.++. .+.++||||.-
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 357999999999999999999986542 222233 3333334444543 57899999963
No 104
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.36 E-value=3.7e-07 Score=77.06 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=37.0
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|.+... ......++.+. ..+.++. .+.++||||...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence 46899999999999999999997532 22222333222 1223332 478999999753
No 105
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.35 E-value=6.7e-07 Score=75.31 Aligned_cols=104 Identities=8% Similarity=-0.086 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL 159 (377)
...+.+||.... .+........+..+|.++.|+|+.++.+.... ++..... +.|+++|+||+|+
T Consensus 51 ~~~~~l~D~~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 51 EVQIDILDTAGQ---------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp EEEEEEEECCC------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred EEEEEEEECCCc---------chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence 356778886442 23344555778999999999999875432221 1222222 6899999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+..+ ......+....+..++.+|+++|.|++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 75321 23344455566788999999999999988776544
No 106
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.35 E-value=4e-07 Score=79.28 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=38.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEe-CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+........ ..|.+.. .+.+ +..+.++||||.-
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI--LPTIGFSIEKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC--CCCSSEEEEEEECSSCEEEEEEECCST
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc--CCccceeEEEEEECCEEEEEEECCCCH
Confidence 35789999999999999999999765222221 2233322 2233 4578999999964
No 107
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=2.3e-07 Score=78.61 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=35.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce--eccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~--~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+.... .......+++.. +.... .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV--ISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE--EEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE--EEECCEEEEEEEEECCCch
Confidence 468999999999999999999965321 111122222221 22222 47899999974
No 108
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.34 E-value=4.4e-07 Score=78.33 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=41.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. ......+.++.+. ..+.++. .+.++||||.-
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35789999999999999999999754 3334445555443 3344443 57899999963
No 109
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.34 E-value=4.7e-07 Score=79.63 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=41.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+.... .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 3578999999999999999999975421 1233345555555555433 57899999974
No 110
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=4.2e-07 Score=78.99 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=41.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeEEEEEEeCC---ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|++.... ...+..|++.....+.+.. .+.++||||.-.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 478999999999999999999975421 2233345555555555543 478999999753
No 111
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.34 E-value=2e-07 Score=81.27 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-------cCCCeEEEEEcc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNRE 157 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-------~~k~~ilVlNK~ 157 (377)
+..+.+||...... ........+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+
T Consensus 66 ~~~~~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 136 (190)
T 2h57_A 66 SLSFTVFDMSGQGR---------YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136 (190)
T ss_dssp SCEEEEEEECCSTT---------TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECT
T ss_pred CEEEEEEECCCCHH---------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCc
Confidence 56788999765421 22333456899999999999987533222 1233332 357999999999
Q ss_pred CCCCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 158 DMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 158 DL~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
|+........+.+++. ..+..++.+|+++|.|++++.+.+.+.
T Consensus 137 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 137 DLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ 184 (190)
T ss_dssp TSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 9976433333433332 234678999999999999887776554
No 112
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.34 E-value=3.9e-07 Score=79.80 Aligned_cols=57 Identities=26% Similarity=0.323 Sum_probs=37.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCC--ceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg--tT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++... .....+. ++.....+.++. .+.++||||.-
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 357899999999999999999997542 2223343 333344445544 57899999964
No 113
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.33 E-value=4.9e-07 Score=77.79 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=38.8
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|.+.. ..+..+.++.+. ..+..+. .+.++||||.-.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchh
Confidence 5789999999999999999999544 334444444332 2333433 457999999753
No 114
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.33 E-value=5e-07 Score=79.89 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=41.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|++.. ......|.+|.+. ..+.++. .+.++||||.-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 35789999999999999999999654 3344455555554 3344443 578999999753
No 115
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.33 E-value=6e-07 Score=75.33 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=37.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+... ....+.++.+. ..+..+. .+.++||||.-
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCch
Confidence 35799999999999999999997542 23333343332 2233332 36789999964
No 116
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.33 E-value=3.9e-07 Score=78.02 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=40.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|.+.. ...+.+.||.... .+..+. .+.++||||.-.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence 35789999999999999999999753 3445555655432 233332 577899999753
No 117
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.33 E-value=3.8e-07 Score=81.25 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=41.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc-eeccCCCCceeEEEEEEeC----CceEEEcCCccccC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM 275 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~----~~~~l~DTPG~i~~ 275 (377)
..++|+++|.+|||||||+|+|++... .......+++.....+... -.+.++||||.-..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK 74 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence 457999999999999999999996442 2234445555444443332 23789999998643
No 118
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.33 E-value=3.8e-07 Score=80.99 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=41.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeC----CceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~----~~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|++.. .....+.++.+...+.++ ..+.++||||..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 5689999999999999999999754 334445556555555554 248999999974
No 119
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.32 E-value=4.8e-07 Score=78.81 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=42.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.. ......|++|.+. ..+..+. .+.++||||.-
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999999754 3445556666554 3444443 47899999964
No 120
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.32 E-value=5e-07 Score=77.44 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH---Hh-cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ---WL-GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~---~l-~~k~~ilVlNK~DL~ 160 (377)
...+.+||.... .+........+..+|++++|+|+.++.+..+.. +.. .. .+.|+++|+||+|+.
T Consensus 59 ~~~~~~~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 59 KVKLQMWDTAGQ---------ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEEECCCC-----------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred EEEEEEEeCCCc---------HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 346778886543 333444456689999999999998764432211 111 11 367899999999998
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+... .....++....+..++++|+++|.|++++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (180)
T 2g6b_A 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 171 (180)
T ss_dssp SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 5321 222333445567889999999999999887766543
No 121
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.32 E-value=5e-07 Score=78.63 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
..++|+++|.+|||||||+|+|++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 35789999999999999999999764
No 122
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.32 E-value=7.9e-07 Score=77.43 Aligned_cols=106 Identities=7% Similarity=-0.020 Sum_probs=70.6
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (377)
.+..+.+||.... .+........+..+|++++|+|+.++.+... ..+..++ .+.|+++|+||+|
T Consensus 65 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 135 (188)
T 1zd9_A 65 GNVTIKLWDIGGQ---------PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135 (188)
T ss_dssp TTEEEEEEEECCS---------HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred CCEEEEEEECCCC---------HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCC
Confidence 4566788885443 3445555677899999999999987643322 1223332 3679999999999
Q ss_pred CCCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 159 L~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+.+......+.+.+. ..+..++++|+++|.|++++.+.+.+.
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 136 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 182 (188)
T ss_dssp STTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 986433333333322 123568899999999999887766543
No 123
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.32 E-value=4.9e-07 Score=79.54 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=40.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. ......+.++.+.. .+.++. .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35789999999999999999999754 23334455444443 333333 57899999974
No 124
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.31 E-value=4e-07 Score=79.71 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=40.3
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i~ 274 (377)
..+|+++|.+|||||||+|+|.+.......+..+.+. ..+.+ +..+.++||||.-.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETTEEEEEEECCCSGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECCEEEEEEECCCCHH
Confidence 4589999999999999999999765444444555543 23333 34688999999853
No 125
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.31 E-value=4.6e-07 Score=79.10 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=40.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceec-cCCCCceeEEEEEEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|.+...... ....|++.....+.++. .+.++||||.-.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 457999999999999999999997543221 12234444444555544 578999999753
No 126
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.31 E-value=8.7e-07 Score=76.61 Aligned_cols=106 Identities=12% Similarity=0.033 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l-----~~k~~ilVlNK~DL 159 (377)
...+.+||.... .+........+..+|++++|+|+.++.+..+.. +..+. .+.|+++|+||+|+
T Consensus 69 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (195)
T 3bc1_A 69 RIHLQLWDTAGL---------ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL 139 (195)
T ss_dssp EEEEEEEEECCS---------GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred EEEEEEEeCCCc---------HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 456788886443 333445567789999999999998765433211 22221 36799999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.+... .+...++....+..++++|+++|.|++++.+.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 140 EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp GGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 75321 2233344456678899999999999999877665543
No 127
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.30 E-value=7e-07 Score=76.81 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=39.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. .....+++|.+.. .+.++. .+.++||||..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 35789999999999999999999754 2344444554432 233333 57899999964
No 128
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.29 E-value=3.9e-07 Score=91.00 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=43.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCcee------------------------------ccCCCCceeEEEEEEe---CC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 262 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~------------------------------v~~~pgtT~~~~~~~~---~~ 262 (377)
..++|+++|.+|+|||||+|+|+...... ....+|+|.+.....+ +.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 35789999999999999999996432111 1223689998765544 45
Q ss_pred ceEEEcCCccc
Q 017100 263 DLEFLDSPGII 273 (377)
Q Consensus 263 ~~~l~DTPG~i 273 (377)
.+.++||||..
T Consensus 96 ~~~iiDTPGh~ 106 (439)
T 3j2k_7 96 HFTILDAPGHK 106 (439)
T ss_pred EEEEEECCChH
Confidence 78999999974
No 129
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.29 E-value=4.8e-07 Score=79.03 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=38.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceec--cCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v--~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
...+|+++|.+|||||||+|+|++.....+ .+..|.+.. .+.. +..+.++||||.-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCH
Confidence 357899999999999999999997664433 344443322 2222 3468899999984
No 130
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.29 E-value=3.1e-07 Score=90.95 Aligned_cols=56 Identities=38% Similarity=0.587 Sum_probs=45.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeC--CceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~~~l~DTPG~i~ 274 (377)
..|+|||+||||||||||+|++.. ..+++.|++|.+... +... ..+.+.||||++.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 358999999999999999999764 478899999987653 3333 5689999999974
No 131
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.29 E-value=7.8e-07 Score=78.09 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=40.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. .....+++|.+.. .+.++. .+.++||||..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence 35799999999999999999999755 3344455554432 233443 57899999964
No 132
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.29 E-value=9.3e-07 Score=76.73 Aligned_cols=106 Identities=9% Similarity=0.077 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... .+........+..+|++++|+|+.++.+..+. .+..+. .+.|+++|+||+|+
T Consensus 59 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 59 NTRFLMWDIGGQ---------ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp TEEEEEEECCC-------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEECCCC---------HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 467788886443 23333445678999999999999887543321 233332 36789999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.+....++..+.+. ..+..++.+|+++|.|++++.+.+.+..
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 130 KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 76432233333332 2345789999999999998877765543
No 133
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.29 E-value=7.1e-07 Score=77.52 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=37.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|++.. ......++|.+.. .+..+. .+.++||||..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC--CccccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 4789999999999999999999754 2334444554432 233332 37899999964
No 134
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.29 E-value=8.8e-07 Score=74.35 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (377)
+..+.+||.......- .......+.....+..+|++++|+|+..+.+.....+..++. +.|+++|+||+|+.+..+
T Consensus 48 ~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 125 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGD--KWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL 125 (161)
T ss_dssp TEEEEEEECGGGCSSS--SCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG
T ss_pred CceEEEEECCCCCCcc--chHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH
Confidence 3467888865442210 001223455567789999999999999876655545555543 789999999999976532
Q ss_pred HHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHH
Q 017100 165 RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 165 ~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
...++. +.+. .++.+|+++|.|++++.+.+.+
T Consensus 126 --~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 126 --YLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp --GCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred --hHHHHH-hCCCCCeEEEecccCCChHHHHHHHHH
Confidence 111222 4565 7899999999999888766543
No 135
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.28 E-value=5.3e-07 Score=78.07 Aligned_cols=105 Identities=11% Similarity=0.056 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... .+........++.+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+
T Consensus 61 ~~~~~~~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 61 GFKLNIWDVGGQ---------KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp TEEEEEEEECCS---------HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEECCCC---------HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 456778885433 3344444567899999999999987654322 1233332 25789999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+........+.+. ..+..++.+|+++|.|++++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (186)
T 1ksh_A 132 PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177 (186)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHH
Confidence 76543333333332 234578899999999999887766544
No 136
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.28 E-value=3.9e-07 Score=80.42 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=36.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
..+|+++|.+|||||||+|+|.+.......+..|.+.. .+.+ +..+.++||||.-
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcH
Confidence 46899999999999999999997654334444555532 2333 3467899999964
No 137
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.28 E-value=4.7e-07 Score=77.47 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=38.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeC----CceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~----~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++... .....|.++.+ ...+.++ ..+.++||||.-
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 457899999999999999999996542 11112222223 2333443 257899999974
No 138
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.27 E-value=4e-07 Score=77.28 Aligned_cols=105 Identities=12% Similarity=0.056 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||..... +........++.+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+
T Consensus 50 ~~~~~~~Dt~G~~---------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 50 NLKFQVWDLGGLT---------SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp TEEEEEEEECCCG---------GGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEECCCCh---------hhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence 5667888865432 222333456789999999999988754322 2233333 36799999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+......+.+.+. ..+..++++|+++|.|++++.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 121 EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET 166 (171)
T ss_dssp TTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHH
Confidence 87533333333332 234578999999999999887766543
No 139
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.26 E-value=8.1e-07 Score=78.36 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=41.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. ......|.++.+. ..+.++. .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 35789999999999999999999754 3334445544443 3444443 58899999964
No 140
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.26 E-value=7.8e-07 Score=78.76 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=38.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-CCc--eEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKD--LEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~--~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.. ..+....+|.+... +.+ +.. +.++||||.-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCch
Confidence 35799999999999999999999643 34455556655432 222 333 4499999984
No 141
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.26 E-value=2.5e-06 Score=73.32 Aligned_cols=105 Identities=8% Similarity=-0.096 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL 159 (377)
...+.+||..... .........+..+|.+++|+|+.++.+.... ++..... +.|+++|+||+|+
T Consensus 65 ~~~~~l~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 65 EVQIDILDTAGQE---------DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp EEEEEEEECCCTT---------CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred EEEEEEEECCCCc---------ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3567888875532 2233445678899999999999875432221 1222222 6899999999999
Q ss_pred CCHH--HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~--~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+.. ......++....+..++++|+++|.|++++.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 7532 2234445566678899999999999999887766543
No 142
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.26 E-value=8.8e-07 Score=78.79 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh---------cCCCeEEEEEcc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---------GNRKRILVLNRE 157 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l---------~~k~~ilVlNK~ 157 (377)
...+.+||. ||+ ..........+..+|++++|+|+.++.+.. .+..++ .+.|+++|+||+
T Consensus 83 ~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~~piilV~NK~ 151 (217)
T 2f7s_A 83 KVHLQLWDT--------AGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENPDIVLIGNKA 151 (217)
T ss_dssp EEEEEEEEE--------ESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCCEEEEEEECT
T ss_pred eEEEEEEEC--------CCc-HhHHhHHHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCCEEEEEECC
Confidence 455777774 443 556666678899999999999998754322 223332 256899999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 158 DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
|+.+... .....++....+..++.+|+++|.|++++.+.+.+.
T Consensus 152 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 152 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 9975322 122333445567889999999999999987766543
No 143
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.26 E-value=5e-07 Score=77.38 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=35.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeC----CceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~----~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. ......|.++.+ ...+.++ ..+.++||||.-
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc-CCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 35789999999999999999999754 222333433333 3334433 257899999953
No 144
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.25 E-value=1.2e-06 Score=75.56 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=37.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCCc---eEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGKD---LEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~~---~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|.+.. .......++.. ...+..+.. +.++||||.-.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchh
Confidence 45799999999999999999999653 22333333332 222333332 45699999753
No 145
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.25 E-value=7.4e-07 Score=78.59 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=35.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.. ......|.++.+ ...+.++. .+.++||||.-
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 45799999999999999999999654 333334444433 33444443 67899999974
No 146
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.24 E-value=9.1e-07 Score=75.52 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=70.6
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l-~~k~~ilVlNK~DL 159 (377)
....+.+||.... ..........++.+|++++|+|+.++.+..+.. +.... .+.|+++|+||+|+
T Consensus 62 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 132 (179)
T 1z0f_A 62 QKIKLQIWDTAGQ---------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132 (179)
T ss_dssp EEEEEEEEECTTG---------GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred eEEEEEEEECCCC---------hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 3456788886443 233344567789999999999998764432211 11111 26789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+... .+...++....+..++++|+++|.|++++.+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (179)
T 1z0f_A 133 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 174 (179)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 65321 23344455667889999999999999888766543
No 147
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=1.2e-06 Score=76.64 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=38.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|++.... .....++.. ...+.++. .+.++||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 3578999999999999999999975422 222222222 12233332 478999999865
No 148
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.24 E-value=9.1e-07 Score=76.49 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=37.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE---EEEEeC-C-----------ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFG-K-----------DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~---~~~~~~-~-----------~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+... .....+..+.+. ..+..+ . .+.++||||.-
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 357999999999999999999996542 222222222222 233332 1 57899999984
No 149
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.24 E-value=4.2e-07 Score=79.82 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=18.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCcee-EE--EEEEeCC-----ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VL--KWVRFGK-----DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~-~~--~~~~~~~-----~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+......+....|+. +. ..+.++. .+.++||||.-
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 5789999999999999999999763223334344442 32 3344443 47899999983
No 150
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.24 E-value=3.5e-07 Score=80.37 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=36.8
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
.++|++||.||||||||+|++.+.....++..+.++.+. ..+.+++ .+.++||+|.-
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence 478999999999999999999965433344444444433 2334443 34688999964
No 151
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.23 E-value=7.9e-07 Score=78.30 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=37.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeC---CceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.... .....++... ..+.++ -.+.++||||.-
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 83 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD 83 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc
Confidence 3578999999999999999999975532 2222333322 222222 246899999964
No 152
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.23 E-value=1.4e-06 Score=75.94 Aligned_cols=57 Identities=28% Similarity=0.326 Sum_probs=36.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCC--CceeEEEEEEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|.+... .....| +.+.. ..+..+. .+.++||||.-.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF-RDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC-CCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC-CCcccCcccccee-EEEEECCEEEEEEEEeCCChHH
Confidence 357899999999999999999997442 111112 22211 1222222 578999999753
No 153
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.23 E-value=9.1e-07 Score=75.88 Aligned_cols=105 Identities=11% Similarity=0.058 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~ 160 (377)
...+.+||.... .+........+..+|++++|+|+.++.+.... . +..+. .+.|+++|+||+|+.
T Consensus 60 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 60 TVKFEIWDTAGQ---------ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEECCCS---------GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCCC---------hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 456788886543 22333445678999999999998875432221 1 11111 156899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+... .....++.+..+..++++|+++|.|++++.+.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (181)
T 2efe_B 131 DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR 172 (181)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5432 234445556678889999999999999887766543
No 154
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.23 E-value=8.8e-07 Score=77.72 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=36.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|.+.. .....++||.+... +..+. .+.++||||.-.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 46799999999999999999999754 34455556655332 33333 456999999853
No 155
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.23 E-value=7.6e-07 Score=75.10 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=36.5
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|+|.+.... ...|........+.. +..+.++||||.-
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCCCSSCCEEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccCcCceeEEEEEECCEEEEEEEcCCCh
Confidence 37999999999999999999865422 233321111222232 3568999999984
No 156
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.23 E-value=8.4e-07 Score=77.27 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=37.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeEEEEEEe-CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.... ...+..|.+ ...+.. +..+.++||||.-
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN--MRKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE--EEEEEETTEEEEEEEECCSH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCcee--EEEEEeCCEEEEEEECCCCH
Confidence 3579999999999999999999965422 122222332 222222 3468899999974
No 157
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.9e-07 Score=95.58 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=42.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccC------------------------------CCCceeEEEEEEe---CC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------------------------------RPGVTRVLKWVRF---GK 262 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~------------------------------~pgtT~~~~~~~~---~~ 262 (377)
..++|+++|.+|||||||+|+|++.......+ .+|+|.+.....+ +.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 46799999999999999999998653222111 3688888644333 45
Q ss_pred ceEEEcCCccc
Q 017100 263 DLEFLDSPGII 273 (377)
Q Consensus 263 ~~~l~DTPG~i 273 (377)
.+.++||||..
T Consensus 246 ~~~iiDTPG~e 256 (611)
T 3izq_1 246 NFTIVDAPGHR 256 (611)
T ss_dssp EEEEEECCSSS
T ss_pred eEEEEECCCCc
Confidence 78999999984
No 158
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.22 E-value=9.7e-07 Score=75.71 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=38.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|++.......+..|.+. ...+.++. .+.++||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch
Confidence 35789999999999999999999755332222233222 22333433 367899999753
No 159
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.22 E-value=4.9e-07 Score=79.52 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=40.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.. ......+++|.+. ..+.++. .+.++||||.-
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 35799999999999999999999654 3333344444443 3444443 57899999964
No 160
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.22 E-value=7.2e-07 Score=79.06 Aligned_cols=106 Identities=10% Similarity=-0.001 Sum_probs=68.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||......- .......+..+|++++|+|+.++.+..+. . +.....+.|+++|+||+|+
T Consensus 55 ~~~~~~i~Dt~G~~~~---------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDY---------SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp CEEEEEEECCCCCCCC---------CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEEEECCCcHHH---------HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHh
Confidence 3457788987654221 11222468899999999999876443221 1 1111237899999999999
Q ss_pred CCHHH----------HHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMAD----------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~----------~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+... .....++....+. .++++|+++|.|++++.+.+.+.
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp HTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHH
Confidence 75432 2222334445564 89999999999999887766544
No 161
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.2e-06 Score=77.64 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=40.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.. ......+.++.+. ..+.++. .+.++||||.-
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999999654 3333444444443 3344443 57899999963
No 162
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.21 E-value=2.4e-06 Score=74.07 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... ..........+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|.||+|+
T Consensus 59 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 59 GFKLNVWDIGGQ---------RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp TEEEEEEECSSC---------GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCC---------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 566788887543 2233445577899999999999987644322 1233332 25799999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+....+...+.+. ..+..++.+||++|.|++++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (181)
T 1fzq_A 130 LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175 (181)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHH
Confidence 76533333333221 123468899999999999887766543
No 163
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.21 E-value=3.8e-06 Score=79.61 Aligned_cols=115 Identities=14% Similarity=0.025 Sum_probs=76.4
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCC
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMI 160 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~ 160 (377)
..+..+.+||+......- ....+...+.....+..+|++++|+|+.++.+..+..+.+.+. +.|+++|+||+|+.
T Consensus 52 ~~~~~l~l~DTpG~~~~~-~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPM-DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp ETTEEEEEEECCCCCCCC-SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred eCCcEEEEecCccccchh-hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 346678899976543210 0111224455567789999999999998876554444433332 68999999999998
Q ss_pred CHHH-HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 161 SMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 161 ~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+... ...+.+.+ .....++++||++|.|++.|.+.+.+..
T Consensus 131 ~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 131 KYPEEAMKAYHEL-LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp SSHHHHHHHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 6554 33333333 1225689999999999988877766543
No 164
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.21 E-value=1.1e-06 Score=77.53 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=39.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+.++. .+.++||||.-
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 457899999999999999999997542 222334333332 2234443 57899999974
No 165
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=3.6e-07 Score=79.79 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=40.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc-eeccCCCCceeEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++... .......|++.....+.... .+.++||||.-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 457999999999999999999996542 11223335555555555432 47899999953
No 166
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.20 E-value=7e-07 Score=75.72 Aligned_cols=57 Identities=19% Similarity=0.033 Sum_probs=33.0
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|++...... ..+.+|.+.. .+.++. .+.++||||.-.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-ccCCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 36899999999999999999986443222 2223333332 233333 467899999853
No 167
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.20 E-value=3.6e-07 Score=78.81 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=25.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.. ......|+++.+.. .+.++. .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 35789999999999999999999643 33334455555543 344443 57899999974
No 168
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.20 E-value=6e-07 Score=77.63 Aligned_cols=103 Identities=10% Similarity=0.084 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||..... +........++.+|++++|+|+.++.+..+. .+..++ .+.|+++|+||+|+
T Consensus 64 ~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 64 NTRFLMWDIGGQE---------SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp TEEEEEEEESSSG---------GGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEECCCCH---------hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 4678888865442 2223334568999999999999887543321 233333 36789999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
......+.+.+++. ..+..++.+|+++|.|++++.+.+.
T Consensus 135 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 135 KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 76422233333321 2235789999999999988876653
No 169
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.20 E-value=7.2e-07 Score=76.16 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~ 160 (377)
...+.+||.... ..........+..+|++++|+|+.++.+.... .+..+. .+.|+++|+||+|+.
T Consensus 62 ~~~~~~~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 62 TVRLQLWDTAGQ---------ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEEECCS---------GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred EEEEEEEECCCc---------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 346788886543 22233445678899999999999875432221 111111 267899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+... ......+....+..++.+|+++|.|++++.+.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174 (179)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 5432 233444555668899999999999999887766543
No 170
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.1e-06 Score=78.83 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=37.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCce--eEEEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+... .....|.++ .....+.++. .+.++||||.-
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEF-NMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCC-CC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 357899999999999999999997542 222233333 3333444544 57899999964
No 171
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.19 E-value=4.2e-06 Score=84.45 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHH
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADR 165 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~ 165 (377)
..+.+||. ||| +.+.+.+...+..+|++++|+|+.++......+...++ .+.|.++|+||+|+.+.+..
T Consensus 73 ~~i~iiDt--------PGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~ 143 (482)
T 1wb1_A 73 YRITLVDA--------PGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEI 143 (482)
T ss_dssp EEEEECCC--------SSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHH
T ss_pred EEEEEEEC--------CCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhH
Confidence 34566663 777 56777778889999999999999875433222211222 36788999999999986433
Q ss_pred H----HHHHHHHHc----CCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 166 N----AWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 166 ~----~~~~~~~~~----g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+ +..+++... +..++++||++|.|+.+|.+.+.+..
T Consensus 144 ~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 144 KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 2 333444444 46799999999999999988777654
No 172
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.19 E-value=5.9e-07 Score=79.12 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=39.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.. ......|++|.+.. .+.++. .+.+.||||.-
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 35789999999999999999998543 23345566665543 233433 35678999984
No 173
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.19 E-value=1.5e-05 Score=71.70 Aligned_cols=113 Identities=11% Similarity=-0.057 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHH--HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH----HHHHhc---CCCeEEEEEcc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIA--KTEKELKDQLKLMDVVIEVRDARIPLSTTHPL----MDQWLG---NRKRILVLNRE 157 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~--~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~----l~~~l~---~k~~ilVlNK~ 157 (377)
+..+.+||...... ++...+ .....+......+|++++|+|+.++.+..... +..+.. +.|+++|+||+
T Consensus 75 ~~~~~l~DtpG~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~ 152 (228)
T 2qu8_A 75 LNKYQIIDTPGLLD--RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKI 152 (228)
T ss_dssp TEEEEEEECTTTTT--SCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECG
T ss_pred CCeEEEEECCCCcC--cccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCc
Confidence 45788999765521 010000 00122334578889999999998876644221 222222 68999999999
Q ss_pred CCCCHHHH-----HHHHHHHHHcC--CeEEEeeCccCCCchhhhhHHHHhh
Q 017100 158 DMISMADR-----NAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 158 DL~~~~~~-----~~~~~~~~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
|+.+.... .....+....+ ..++++|+++|.|++++.+.+.+..
T Consensus 153 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 153 DKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp GGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 99865321 12333334445 6889999999999999877665443
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.19 E-value=2.2e-07 Score=96.19 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=29.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceec------------------------------cCCCCceeEEEEEEe---CC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~ 262 (377)
..++|+++|.+|+|||||+|+|++...... ...+|+|.+.....+ +.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 457899999999999999999964321111 125789988765444 35
Q ss_pred ceEEEcCCccc
Q 017100 263 DLEFLDSPGII 273 (377)
Q Consensus 263 ~~~l~DTPG~i 273 (377)
.+.|+||||..
T Consensus 256 ~i~iiDTPGh~ 266 (592)
T 3mca_A 256 IYEIGDAPGHR 266 (592)
T ss_dssp ---CCEEESSS
T ss_pred EEEEEECCChH
Confidence 68899999964
No 175
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.18 E-value=9.3e-07 Score=74.62 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=69.9
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHH---HhcCCCeEEEEEccCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ---WLGNRKRILVLNREDMI 160 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~---~l~~k~~ilVlNK~DL~ 160 (377)
....+.+||.... ..........+..+|++++|+|+.++.+..+. .+.. ...+.|+++|+||+|+.
T Consensus 52 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 52 EDVRLMLWDTAGQ---------EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEEEECCTTG---------GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EEEEEEEEcCCCc---------HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 3456788886543 12223344678899999999999875432221 1111 12378999999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+... .....++.+..+..++.+|+++|.|++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 5321 23333445566889999999999999988776654
No 176
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.18 E-value=3.6e-06 Score=84.92 Aligned_cols=113 Identities=13% Similarity=0.138 Sum_probs=75.1
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHH-HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAK-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD 164 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~-~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~ 164 (377)
.+..+.+||+...... +....+. ..+...+.++++|++|+|+|+.++.+..+.++.+.+.++|+++|+||+|+.+...
T Consensus 289 ~g~~~~l~DTaG~~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~ 367 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSE-TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKIN 367 (482)
T ss_dssp TTEEEEEEESSCCCSS-CCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCC
T ss_pred CCeEEEEEECCCcccc-chhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccC
Confidence 4567889998754311 1100000 1233456789999999999998877655555555567899999999999975422
Q ss_pred HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 165 RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 165 ~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+...+++ ..+.+++++|+++|.|+++|.+.+.+.
T Consensus 368 ~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 368 EEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 22222222 233578999999999999988776553
No 177
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.18 E-value=6.9e-07 Score=78.35 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=67.4
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D 158 (377)
.+..+.+||.... .+........++.+|++++|+|+.++.+..+ ..+..++. +.|+++|+||+|
T Consensus 71 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 141 (192)
T 2b6h_A 71 KNICFTVWDVGGQ---------DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141 (192)
T ss_dssp TTEEEEEEECC--------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CCEEEEEEECCCC---------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence 4567788886433 2333444567899999999999987643322 12333332 678999999999
Q ss_pred CCCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.+....+.+.+.+. ..+..++.+|+++|.|++++.+.+.+
T Consensus 142 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 187 (192)
T 2b6h_A 142 MPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH 187 (192)
T ss_dssp STTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence 976533333433322 12346889999999999988776543
No 178
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.18 E-value=1.1e-06 Score=75.69 Aligned_cols=56 Identities=20% Similarity=0.165 Sum_probs=37.0
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|++... ......++.+.. .+.++. .+.++||||.-.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHh
Confidence 57899999999999999999986432 223333333321 222332 356999999853
No 179
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.18 E-value=1.2e-06 Score=76.29 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=37.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|++.. ..+....|+.+.. .+.++. .+.++||||.-.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence 35799999999999999999999754 2344444544432 223332 467899999854
No 180
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.17 E-value=3.6e-06 Score=73.75 Aligned_cols=105 Identities=8% Similarity=-0.095 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL 159 (377)
...+.+||..... .........+..+|.+++|+|+.++.+.... .+..... +.|+++|+||+|+
T Consensus 61 ~~~~~l~Dt~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 61 EVQIDILDTAGQE---------DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp EEEEEEEECCCTT---------CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred EEEEEEEcCCChh---------hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 3467888865532 2233445678899999999999875432221 1222222 6899999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+..+ ......+....+..++++|+++|.|++++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174 (206)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 75422 233444555667889999999999999887766543
No 181
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.17 E-value=1.5e-06 Score=77.02 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=35.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+.++. .+.++||||..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcH
Confidence 468999999999999999999975422 22223222222 2233443 47899999974
No 182
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.17 E-value=3.4e-06 Score=74.44 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~ 160 (377)
...+.+||.... .+........+..+|++++|+|+.++.+..+. .+..+. .+.|+++|.||+|+.
T Consensus 77 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 77 RVKLQIWDTAGQ---------ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEEECCTTC---------GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCc---------HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 357788886543 23344455778999999999998765442221 111221 357899999999997
Q ss_pred CHHH--HHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMAD--RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+... .+...++....+. .++.+|+++|.|++++.+.+.+.
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 190 (201)
T 2hup_A 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATE 190 (201)
T ss_dssp GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 5321 2233344556677 89999999999999887765543
No 183
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.17 E-value=1.8e-06 Score=76.98 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=32.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++... ......++.+. ..+.++. .+.++||||.-
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 357899999999999999999996542 22223333332 2233333 47899999964
No 184
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.17 E-value=5.8e-07 Score=90.78 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=41.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC------------------------------ceeccCCCCceeEEEEEEe---CC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR------------------------------MCPAAPRPGVTRVLKWVRF---GK 262 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~------------------------------~~~v~~~pgtT~~~~~~~~---~~ 262 (377)
..++|+++|.+|+|||||+|+|++.. ....+..+|+|.+.....+ +.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 35789999999999999999997541 1122334688888655444 45
Q ss_pred ceEEEcCCccc
Q 017100 263 DLEFLDSPGII 273 (377)
Q Consensus 263 ~~~l~DTPG~i 273 (377)
.+.++||||..
T Consensus 112 ~~~iiDTPG~~ 122 (483)
T 3p26_A 112 NFTIVDAPGHR 122 (483)
T ss_dssp EEEEECCCCCG
T ss_pred eEEEEECCCcH
Confidence 78999999984
No 185
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.17 E-value=2.5e-06 Score=74.58 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l-~~k~~ilVlNK~DL~ 160 (377)
...+.+||.... .+........+..+|++++|+|+.++.+..+. .+.... .+.|+++|+||+|+.
T Consensus 74 ~~~l~l~Dt~G~---------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQ---------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCS---------GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCc---------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 456788886543 23344456778999999999999876543331 111111 267899999999997
Q ss_pred CHHH--HHHHHHHHHH-cCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMAD--RNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~-~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+..+ .....++... .+..++.+|+++|.|++++.+.+.+
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5322 1222233333 2678999999999999988776543
No 186
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.17 E-value=2.6e-06 Score=73.87 Aligned_cols=106 Identities=10% Similarity=-0.043 Sum_probs=65.4
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~D 158 (377)
...++.+||.... ..........+..+|+++.|+|+.++.+..+. .+..... +.|+++|+||+|
T Consensus 67 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 137 (190)
T 3con_A 67 ETCLLDILDTAGQ---------EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137 (190)
T ss_dssp EEEEEEEEECCC--------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEEECCCh---------HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCc
Confidence 3456888986443 33344455678999999999999876432221 1222222 689999999999
Q ss_pred CCCHH-HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 159 MISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 159 L~~~~-~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+.+.. ......++....+..++.+|+++|.|++++.+.+.+.
T Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 138 LPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp CSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 97522 1222333445567889999999999999887766543
No 187
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.17 E-value=3.6e-06 Score=71.19 Aligned_cols=105 Identities=16% Similarity=0.029 Sum_probs=66.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc-----CCCeEEEEEcc
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG-----NRKRILVLNRE 157 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~-~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l~-----~k~~ilVlNK~ 157 (377)
....+.+||.... ......+. ..+..+|+++.|+|+.++.+.... .+..+.. +.|+++|.||+
T Consensus 49 ~~~~~~i~D~~g~---------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 49 EEVTLIVYDIWEQ---------GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred eEEEEEEEECCCc---------cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 3456778886443 22222233 457889999999999875433221 1222221 68999999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 158 DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
|+.+... .....++....+..++.+|+++|.|++++.+.+.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 120 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHH
Confidence 9974321 12233345566788999999999999888766543
No 188
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.16 E-value=8e-06 Score=81.42 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------CcHH-HHHH-hcCCC-eEEEEEccCCCCH----HH----H
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPL-MDQW-LGNRK-RILVLNREDMISM----AD----R 165 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~-------~~~~-l~~~-l~~k~-~ilVlNK~DL~~~----~~----~ 165 (377)
||| +.+.+.+...+..+|++++|+|++.+... ...+ +..+ ..+.| +++++||+|+.+. .. .
T Consensus 103 PGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~ 181 (439)
T 3j2k_7 103 PGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECK 181 (439)
T ss_pred CCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHH
Confidence 676 66778888889999999999999986531 1111 1111 12556 8999999999642 11 1
Q ss_pred HHHHHHHHHcC------CeEEEeeCccCCCchhhhh
Q 017100 166 NAWATYFAKQG------TKVIFSNGQLGMGTMKLSR 195 (377)
Q Consensus 166 ~~~~~~~~~~g------~~vi~iSa~~g~gi~~L~~ 195 (377)
.+..+++.+.| ..++++||++|.|+.++.+
T Consensus 182 ~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 182 EKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 22333444444 3589999999999988543
No 189
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.16 E-value=9.4e-07 Score=78.06 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHH---hc-CCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQW---LG-NRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~---l~-~k~~ilVlNK~DL~~ 161 (377)
..+.+||.... ..........+..+|++++|+|+.++.+.... . +..+ .. +.|+++|+||+|+..
T Consensus 69 ~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 69 VKLQLWDTAGQ---------ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp EEEEEECCTTG---------GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred EEEEEEeCCCc---------HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 56778886443 22233345678999999999998875432221 1 1111 11 578999999999953
Q ss_pred HHH-HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 162 MAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 162 ~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
... ......+....+..++++|+++|.|++++.+.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 321 1222233445678899999999999999877765543
No 190
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.16 E-value=1.5e-06 Score=76.77 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=36.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+.. ......|.++.+. ..+.++. .+.++||||.-
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA-FSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC-C----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC-CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999998654 2222223222332 3344443 68899999974
No 191
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.16 E-value=1.5e-06 Score=74.21 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh---cCCC-eEEEEEccC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL---GNRK-RILVLNRED 158 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l---~~k~-~ilVlNK~D 158 (377)
..+.+||...... ........+..+|++++|+|+.++.+..+.. +.... ...| +++|.||+|
T Consensus 56 ~~~~~~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 56 VTLQIWDIGGQTI---------GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp EEEEEEECTTCCT---------TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred EEEEEEECCCCcc---------ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 5678888765422 1223345689999999999998765432211 11111 1456 789999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+.+... .+....+....+..++++|+++|.|++++.+.+.+.
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 965321 122333445567889999999999999887766543
No 192
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.16 E-value=3.6e-06 Score=70.88 Aligned_cols=105 Identities=10% Similarity=-0.111 Sum_probs=67.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~---l~~~l--~~k~~ilVlNK~D 158 (377)
....+.+||...... ........+..+|.++.|+|+.++.+..+. . +.... .+.|+++|+||+|
T Consensus 49 ~~~~~~l~D~~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQ---------FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119 (167)
T ss_dssp CEEEEEEEEECSSCS---------STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTT
T ss_pred EEEEEEEEECCChHH---------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcc
Confidence 345678888654321 122334567889999999999876432221 1 22222 2689999999999
Q ss_pred CCCHHH--HHHHHHHHHHc-CCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMAD--RNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.+... .+....+.+.. +..++++|+++|.|++++.+.+.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp CGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHH
Confidence 965322 12222334444 678999999999999988776643
No 193
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.15 E-value=3.6e-06 Score=83.07 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-CcH---HHHHHhcCCCeEEEEEccCCCCHHH
Q 017100 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-THP---LMDQWLGNRKRILVLNREDMISMAD 164 (377)
Q Consensus 89 d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~-~~~---~l~~~l~~k~~ilVlNK~DL~~~~~ 164 (377)
.+.+||. ||| +.+.+.+...+..+|++++|+|+.++... ... .+...+..+|+++|+||+|+.+.+.
T Consensus 84 ~i~iiDt--------PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 84 RVSFIDA--------PGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EEEEEEC--------SSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred EEEEEEC--------CCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence 4566774 777 55666667778899999999999975411 111 1222234568899999999998653
Q ss_pred H----HHHHHHHHH---cCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 165 R----NAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 165 ~----~~~~~~~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
. +++.+++.. .+.+++++|+++|.|++.|.+.+.+.
T Consensus 155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 2 233344433 34689999999999999988877653
No 194
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.15 E-value=1.3e-06 Score=76.57 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=35.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEe-CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~-~~~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|.+...... .| |.+. ..+.. +..+.++||||.-.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcccc--CC--cCceeEEEEEECCEEEEEEECCCCHh
Confidence 357899999999999999999986543322 22 3222 22222 34678999999853
No 195
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=9.4e-07 Score=79.37 Aligned_cols=56 Identities=18% Similarity=0.079 Sum_probs=37.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE--EEEEeCC---ceEEEcCCcc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~l~DTPG~ 272 (377)
.++|++||.||||||||+|++.+.....+...+.++.+. ..+.++. .+.++||+|.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCC
Confidence 478999999999999999999975433344444443332 3334443 3568999995
No 196
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.15 E-value=2.9e-06 Score=71.21 Aligned_cols=104 Identities=13% Similarity=-0.082 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~---l~~~l--~~k~~ilVlNK~DL 159 (377)
...+.+||..... .........+..+|.++.|+|+.++.+..+. . +.... .+.|+++|+||+|+
T Consensus 50 ~~~~~l~D~~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 50 PSVLEILDTAGTE---------QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp EEEEEEEECCCTT---------CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred EEEEEEEECCCch---------hhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 3457788865532 2233344678999999999999875432221 1 22222 26899999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+..+ ......+..+.+..++.+|+++|.|++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHH
Confidence 65422 12223344556788999999999999888776644
No 197
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=1.2e-06 Score=76.42 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=71.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE 157 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~ 157 (377)
....+.+||.... .+........+..+|++++|+|+.++.+..+ +..++ .+.|+++|+||+
T Consensus 70 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~--~~~~~~~i~~~~~~~~piiiv~NK~ 138 (192)
T 2fg5_A 70 ELHKFLIWDTAGQ---------ERFHSLAPMYYRGSAAAVIVYDITKQDSFYT--LKKWVKELKEHGPENIVMAIAGNKC 138 (192)
T ss_dssp SEEEEEEEEECCS---------GGGGGGTHHHHTTCSEEEEEEETTCTHHHHH--HHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEEEEcCCCc---------hhhHhhhHHhhccCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECc
Confidence 3456788886543 2223344567899999999999987643322 22221 267899999999
Q ss_pred CCCCHH--HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 158 DMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 158 DL~~~~--~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
|+.+.. ..+...++.++.+..++++|+++|.|++++.+.+.+.
T Consensus 139 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ 183 (192)
T ss_dssp GGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 997432 1234445556677889999999999999887776554
No 198
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.15 E-value=3.3e-06 Score=72.77 Aligned_cols=106 Identities=10% Similarity=-0.067 Sum_probs=67.8
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~---l~~~l--~~k~~ilVlNK~D 158 (377)
....+.+||.... ..........+..+|.++.|+|+.++.+.... . +.... .+.|+++|+||+|
T Consensus 50 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 50 ETCLLDILDTAGQ---------EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp EEEEEEEEECCCC------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred cEEEEEEEECCCc---------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 3345667886543 22333444678899999999999875432221 1 11111 2679999999999
Q ss_pred CCCHHHH-HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 159 MISMADR-NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 159 L~~~~~~-~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+.+.... .....+....+..++++|+++|.|++++.+.+.+.
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163 (189)
T ss_dssp SSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9754321 22223344567889999999999999987766543
No 199
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.15 E-value=1.5e-06 Score=75.79 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=37.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.. . ......|+.+.. .+..+. .+.++||||.-
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE-I-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-C-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC-C-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 45799999999999999999999754 2 233333333321 222322 35899999963
No 200
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.14 E-value=6.2e-07 Score=80.94 Aligned_cols=106 Identities=14% Similarity=0.096 Sum_probs=71.1
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEcc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNRE 157 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~---l-~~k~~ilVlNK~ 157 (377)
....+.+.+||+..+ ++.......++..+|.++.|+|..++.+..+.. +..+ . .+.|++||.||+
T Consensus 58 ~~~~v~l~iwDtaGq---------e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~ 128 (216)
T 4dkx_A 58 EDRTIRLQLWDTAGL---------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128 (216)
T ss_dssp SSCEEEEEEECCSCT---------TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECT
T ss_pred cceEEEEEEEECCCc---------hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence 334466778887665 333344456789999999999988765544321 1111 1 256899999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 158 DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
||..... .++..++.++.+..++.+||++|.|++++.+.+.
T Consensus 129 Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred chHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 9965421 1222334456688899999999999998765543
No 201
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.14 E-value=3.8e-06 Score=73.15 Aligned_cols=105 Identities=14% Similarity=0.014 Sum_probs=69.6
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL 159 (377)
....+.+||. ||+ ..........+..+|++++|+|+.++.+.... . +..+. .+.|+++|+||+|+
T Consensus 70 ~~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 140 (191)
T 3dz8_A 70 KRVKLQIWDT--------AGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140 (191)
T ss_dssp TTEEEEEECH--------HHH-HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEEEeC--------CCh-HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 3455667763 453 55566667889999999999999865433221 1 11111 26789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+... ......+....+..++.+|+++|.|++++.+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182 (191)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 64321 12222334556789999999999999988766544
No 202
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.13 E-value=6.2e-06 Score=69.61 Aligned_cols=106 Identities=11% Similarity=-0.039 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HH---HHHHh---cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL---GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~---l~~~l---~~k~~ilVlNK~D 158 (377)
...+.+||...... ........+..+|.+++|+|+.++.+..+ .. +.+.. .+.|+++|+||+|
T Consensus 50 ~~~~~~~Dt~G~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~D 120 (172)
T 2erx_A 50 ICTLQITDTTGSHQ---------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120 (172)
T ss_dssp EEEEEEEECCSCSS---------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGG
T ss_pred EEEEEEEECCCchh---------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccc
Confidence 34678888755422 22334456888999999999987543322 11 22221 2689999999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 159 L~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+.+..+. .....+....+..++++|+++|.|++++.+.+.+..
T Consensus 121 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp GGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred cccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 9754321 122233445578899999999999999887766543
No 203
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.13 E-value=7.4e-07 Score=79.36 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=39.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCcee--ccCCCCceeEEEEEEeCCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~~~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|+|.+..... .+..|+++.+. ....+.++||||.-.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHH
Confidence 35789999999999999999999754211 12344444332 245789999999953
No 204
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.13 E-value=1e-06 Score=74.38 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~ 160 (377)
+..+.+||.... ..........+..+|++++|+|+.++.+..+. .+..+. ...|+++|.||+|+.
T Consensus 54 ~~~~~~~D~~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 54 TVKFEIWDTAGQ---------ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEEECCS---------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCc---------HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 456778886443 22333445678999999999999876432221 112221 256788899999996
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+... .....++....+..++.+|+++|.|++++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5321 22333445566788999999999999988776654
No 205
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.13 E-value=1.3e-06 Score=88.19 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=39.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEE--Ee-CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~~~l~DTPG~i 273 (377)
..++|++||.||||||||+|+|++.... ...| |.+.... .. +..+.++||||.-
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTYKNVKFNVWDVGGQD 377 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEESSSCEEEEEEECCCG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccceeEEEEEeCCEEEEEEECCCcH
Confidence 4589999999999999999999987633 3333 4443332 22 4468999999964
No 206
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.13 E-value=9.6e-07 Score=76.07 Aligned_cols=102 Identities=11% Similarity=0.137 Sum_probs=59.8
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDM 159 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL 159 (377)
..+.+||.. |+ .+........+..+|++++|+|+.++.+..+ +..++ .+.|+++|+||+|+
T Consensus 57 ~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (183)
T 2fu5_C 57 IKLQIWDTA--------GQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDN--IRNWIRNIEEHASADVEKMILGNKCDV 125 (183)
T ss_dssp EEEEEEEC------------------CCTTTTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHSCTTCEEEEEEEC--C
T ss_pred EEEEEEcCC--------CC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCCEEEEEECccC
Confidence 456777753 32 2333334466899999999999987543222 22222 25789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+... ......+....+..++.+|+++|.|++++.+.+.+.
T Consensus 126 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp CSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHH
T ss_pred CccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 75321 222333445667899999999999999987766544
No 207
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.12 E-value=2.7e-06 Score=73.17 Aligned_cols=105 Identities=14% Similarity=0.010 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~---l~~~l--~~k~~ilVlNK~DL 159 (377)
...+.+||..... .........+..+|++++|+|+.++.+..+. . +.... .+.|+++|+||+|+
T Consensus 65 ~~~l~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 65 WAILDVLDTAGQE---------EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp EEEEEEEECCSCG---------GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred EEEEEEEECCCch---------hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 3446678865532 2223334568899999999999876433221 1 11211 26789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCc-cCCCchhhhhHHHHh
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQ-LGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~-~g~gi~~L~~~l~~l 200 (377)
.+... .....++....+..++.+|++ +|.|++++.+.+.+.
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp STTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred hhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHH
Confidence 75321 122233445567889999999 999999887766543
No 208
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.12 E-value=2.6e-06 Score=75.95 Aligned_cols=106 Identities=11% Similarity=0.023 Sum_probs=62.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~------~l~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||.... ..........+..+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+
T Consensus 80 ~~~~l~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 80 KPVHLHIWDTAGQ---------DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEEEC------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred EEEEEEEEECCCc---------hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 3446778885432 33444445678999999999999875433221 11111237899999999999
Q ss_pred CCHHHHH--------------HHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMADRN--------------AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~~--------------~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+..... ...++.+..+. .++.+|+++|.|++++.+.+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp GSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 8654221 12333445565 89999999999999887766543
No 209
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.10 E-value=7.6e-07 Score=76.63 Aligned_cols=105 Identities=11% Similarity=0.050 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... ..........+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+
T Consensus 61 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 61 NLKLNVWDLGGQ---------TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp TEEEEEEEEC-------------CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred CEEEEEEECCCC---------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 456778885433 2222233456889999999999987744322 1233333 35789999999999
Q ss_pred CCHHHHHHHHHHHHH-----cCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+....+.+.+++.. .+..++.+|+++|.|++++.+.+.+.
T Consensus 132 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (183)
T 1moz_A 132 PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177 (183)
T ss_dssp TTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 764333333333321 23468899999999999887776554
No 210
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.10 E-value=2.8e-06 Score=74.53 Aligned_cols=106 Identities=12% Similarity=-0.026 Sum_probs=69.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL 159 (377)
....+.+||.... .+........+..+|++++|+|+.++.+..... +..+. .+.|+++|+||+|+
T Consensus 55 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (203)
T 1zbd_A 55 KRIKLQIWDTAGL---------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 125 (203)
T ss_dssp EEEEEEEEEECCS---------GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTC
T ss_pred eEEEEEEEECCCc---------hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 3456778886443 233444556789999999999998754322111 11111 26789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+... ......+....+..++.+|+++|.|++++.+.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp TTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 75321 122333445567899999999999999887765543
No 211
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.10 E-value=8.4e-06 Score=68.14 Aligned_cols=105 Identities=10% Similarity=-0.062 Sum_probs=68.5
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~--~k~~ilVlNK~D 158 (377)
...++.+||...... ........+..+|.++.|+|+.++.+..+. ++..... +.|+++|+||+|
T Consensus 49 ~~~~~~~~D~~G~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D 119 (166)
T 2ce2_X 49 ETCLLDILDTAGQEE---------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEEEEECCCCSS---------CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEEECCCchh---------hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence 345678898765421 122334568899999999998765332211 1111222 689999999999
Q ss_pred CCCHHH-HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.+... .....++.++.+..++.+|+++|.|++++.+.+.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp CSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred hhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 976322 22233344556788999999999999988776654
No 212
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.10 E-value=2.8e-06 Score=73.88 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-CCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l~-~k~~ilVlNK~DL~ 160 (377)
...+.+||.... ..........+..+|++++|+|+.++.+..... +..... +.|+++|+||+|+.
T Consensus 64 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 64 TIKLQIWDTAGQ---------ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp EEEEEEEEECCS---------GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEECCCc---------HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 356788886543 223334456789999999999998754322211 111111 67899999999997
Q ss_pred CHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+.... .....+....+..++.+|+++|.|++++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 176 (196)
T 3tkl_A 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 176 (196)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 65321 22333445667899999999999999887665543
No 213
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.09 E-value=1.4e-06 Score=73.55 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~ 160 (377)
...+.+||.... ..........+..+|++++|+|+.++.+..+.. +..+. .+.|+++|+||+|+.
T Consensus 51 ~~~~~~~D~~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 51 TVKFEIWDTAGQ---------ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEEEEECCS---------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCCC---------hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 446778886543 222334556789999999999998764432211 11221 267899999999997
Q ss_pred CH---HH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SM---AD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~---~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+. .+ .+...++....+..++.+|+++|.|++++.+.+.+
T Consensus 122 ~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp GSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHT
T ss_pred ccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 53 11 12222334456788999999999999888776543
No 214
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.09 E-value=2.2e-06 Score=72.46 Aligned_cols=104 Identities=8% Similarity=-0.038 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HH-HHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~l-~~~l----~~k~~ilVlNK~DL~ 160 (377)
...+.+||.... .+........+..+|++++|+|+.++.+..+. .+ ..+. ...|+++|.||+|+.
T Consensus 54 ~~~~~~~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 54 LHKFLIWDTAGL---------ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEEECCS---------GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEEcCCCc---------hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 356778886443 22334445678999999999999876443221 11 1111 256788999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+..+ .+....+....+..++++|+++|.|++++.+.+.+
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 165 (170)
T 1z0j_A 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISR 165 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence 5422 12223334556788999999999999988776654
No 215
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.09 E-value=2e-06 Score=74.60 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=33.9
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceeccC-CCCceeEEEEEEe--------CCceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF--------GKDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~-~pgtT~~~~~~~~--------~~~~~l~DTPG~i 273 (377)
++|+++|.+|||||||+|+|.+......+. .|.++.+.....+ .-.+.+.||||.-
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 579999999999999999999753222222 2333334332221 2357899999974
No 216
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.08 E-value=2.6e-06 Score=84.05 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=64.4
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHH--HHHhcCCCeEEEEEccCCCCHH
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLM--DQWLGNRKRILVLNREDMISMA 163 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l--~~~l~~k~~ilVlNK~DL~~~~ 163 (377)
..+.+||. ||| +.+.+.+...+..+|++++|+|+.++....+ ..+ .+.+..+|+++++||+|+.+.+
T Consensus 81 ~~i~iiDt--------PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 81 RRVSFVDS--------PGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEEEEEEC--------SSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred cEEEEEEC--------CCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 34667774 777 4566666666778899999999997641111 112 2223356899999999998653
Q ss_pred H----HHHHHHHHHH---cCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 164 D----RNAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 164 ~----~~~~~~~~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
. .++..+++.+ .+..++++|+++|.|+++|.+.+.+.
T Consensus 152 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp TTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 2 2334444433 24689999999999999988877653
No 217
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.08 E-value=4e-06 Score=73.57 Aligned_cols=105 Identities=14% Similarity=0.052 Sum_probs=67.4
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~---l-~~k~~ilVlNK~DL 159 (377)
....+.+||..... .........+..+|++++|+|+.++.+..+.. +..+ . .+.|+++|+||+|+
T Consensus 75 ~~~~l~i~Dt~G~~---------~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 145 (199)
T 2p5s_A 75 ERTVLQLWDTAGQE---------RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADI 145 (199)
T ss_dssp EEEEEEEEECTTCT---------TCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGG
T ss_pred EEEEEEEEECCCCc---------chhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 34567888875542 22344556789999999999998764433211 1111 1 26899999999999
Q ss_pred CCHHH--------HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMAD--------RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~--------~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+... ......+....+..++++|+++|.|++++.+.+.+
T Consensus 146 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 63210 11122334456788999999999999888666543
No 218
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.08 E-value=3.2e-06 Score=71.34 Aligned_cols=107 Identities=15% Similarity=-0.001 Sum_probs=61.7
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEcc
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNRE 157 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~ 157 (377)
.....+.+||.... ..........+..+|.++.|+|..++.+..+. .+..+. .+.|+++|+||+
T Consensus 46 ~~~~~~~i~D~~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 116 (166)
T 3q72_A 46 GEEASLMVYDIWEQ---------DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116 (166)
T ss_dssp TEEEEEEEEECC------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred CEEEEEEEEECCCC---------ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 34456778886433 33344445678999999999999876433221 112221 257999999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 158 DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
|+.+... ......+....+..++++|+++|.|++++.+.+.+.
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp TCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Confidence 9975432 122223344567889999999999999887766543
No 219
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.08 E-value=4.8e-07 Score=80.95 Aligned_cols=104 Identities=10% Similarity=-0.024 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMIS 161 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~~k~~ilVlNK~DL~~ 161 (377)
+..+.+||.... ..........+..+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+.+
T Consensus 63 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 63 PIKFNVWDTAGQ---------EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp EEEEEEEEECSG---------GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred EEEEEEEeCCCh---------HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 456778886543 12222334567899999999999875443221 1222223789999999999976
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 162 ~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.........+.+..+..++.+|+++|.|++++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 171 (221)
T 3gj0_A 134 RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171 (221)
T ss_dssp CSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHH
T ss_pred ccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 44322333345566789999999999999988776554
No 220
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.08 E-value=1.1e-06 Score=75.67 Aligned_cols=106 Identities=15% Similarity=0.012 Sum_probs=68.3
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH----hcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~----l~~k~~ilVlNK~DL 159 (377)
....+.+||..... +........+..+|++++|+|+.++.+..+. .+... ..+.|+++|+||+|+
T Consensus 51 ~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 51 KPVNLGLWDTAGQE---------DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121 (186)
T ss_dssp EEEEEEEECCCCSG---------GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHH
T ss_pred EEEEEEEEECCCCH---------hHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccc
Confidence 34566788865431 1222233467899999999999875443221 11111 227899999999999
Q ss_pred CCHHHH--------------HHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMADR--------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~--------------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+.... .....+.+..+. .++++|+++|.|++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHH
Confidence 754221 122333445565 89999999999999987766554
No 221
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.08 E-value=3.8e-06 Score=72.90 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh--cCCCeEEEEEccCCCCH-
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL--GNRKRILVLNREDMISM- 162 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l--~~k~~ilVlNK~DL~~~- 162 (377)
..+.+||.... ..........+..+|++++|+|+.++.+..+.. +..+. ...|+++|+||+|+...
T Consensus 93 ~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 93 IKFDIWDTAGQ---------ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ 163 (208)
T ss_dssp EEEEEEECTTG---------GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred eEEEEEECCCc---------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence 56788886442 222334556789999999999998764432211 11221 25899999999994221
Q ss_pred HHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 163 ~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.......++.+..+..++++|+++|.|++++.+.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 12344455666778899999999999999887766543
No 222
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.08 E-value=2e-06 Score=73.49 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h--cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L--GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~---l--~~k~~ilVlNK~DL 159 (377)
...+.+||..... +........+..+|.++.|+|+.++.+..+. .+..+ . .+.|+++|+||+|+
T Consensus 56 ~~~~~~~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 56 PARLDILDTAGQE---------EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp EEEEEEEECCCTT---------TTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred EEEEEEEECCCch---------hhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3567788875532 1122234567889999999999875432221 12222 1 26799999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+... ......+....+..++.+|+++|.|++++.+.+.+.
T Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 127 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA 169 (181)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 75422 122233345567889999999999999887766544
No 223
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.07 E-value=1.7e-06 Score=75.82 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-------cCCCeEEEEEcc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-------GNRKRILVLNRE 157 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l-------~~k~~ilVlNK~ 157 (377)
...+.+||.. |+ ..........+..+|++++|+|+.++.+..+.. +..+. .+.|+++|+||+
T Consensus 72 ~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 142 (208)
T 2yc2_C 72 SVELFLLDTA--------GS-DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKT 142 (208)
T ss_dssp EEEEEEEETT--------TT-HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC
T ss_pred EEEEEEEECC--------Cc-HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECc
Confidence 4567888854 32 344455557789999999999998764322211 11111 367899999999
Q ss_pred CCCC-HHH--HHHHHHHHHHcCCeEEEeeCcc-CCCchhhhhHHHH
Q 017100 158 DMIS-MAD--RNAWATYFAKQGTKVIFSNGQL-GMGTMKLSRLAKA 199 (377)
Q Consensus 158 DL~~-~~~--~~~~~~~~~~~g~~vi~iSa~~-g~gi~~L~~~l~~ 199 (377)
|+.+ ... .....++.+..+..++.+|+++ |.|++++.+.+.+
T Consensus 143 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 143 DLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp -------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHH
T ss_pred ccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHH
Confidence 9986 322 2334445566788999999999 9999988776654
No 224
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.07 E-value=1e-06 Score=75.69 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=31.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-C--CceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G--KDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~--~~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+.. .....+.|+.+... +.+ + -.+.++||||.-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC--CC----------CBCCCC-------CEEECCCC-C
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCCh
Confidence 5789999999999999999999654 22333334433211 111 2 235699999974
No 225
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.07 E-value=3.1e-06 Score=82.06 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.5
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|++||.+|||||||+|+|++..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999999854
No 226
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.07 E-value=6.2e-07 Score=76.72 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=69.2
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEEEccCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMI 160 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-------~~k~~ilVlNK~DL~ 160 (377)
..+.+||..... .........+..+|++++|+|+.++.+... +..++ .+.|+++|+||+|+.
T Consensus 58 ~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 58 VKLQIWDTAGQE---------RFRTITSTYYRGTHGVIVVYDVTSAESFVN--VKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp EEEEEEEETTGG---------GCSSCCGGGGTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCch---------hhhhhHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 567788865432 122223355789999999999987543322 22222 257899999999987
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
+... ......+....+..++++|+++|.|++++.+.+.+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5431 12333444566789999999999999998777665443
No 227
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.06 E-value=2e-06 Score=72.68 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~ 160 (377)
...+.+||.... ..........+..+|++++|+|+.++.+..+. . +..+. .+.|+++|+||+|+.
T Consensus 51 ~~~~~l~D~~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 51 KVKLQIWDTAGQ---------ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEEEEEECCTTG---------GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCCC---------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 346778886543 22223344668899999999999876432221 1 11111 267899999999995
Q ss_pred CHHH-HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.... .+...++.++.+..++++|+++|.|++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3221 222333445567889999999999999887766544
No 228
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.06 E-value=2.4e-06 Score=74.26 Aligned_cols=106 Identities=11% Similarity=-0.028 Sum_probs=69.6
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL 159 (377)
....+.+||....... .......+..+|++++|+|+.++.+.... . +..+. .+.|+++|+||+|+
T Consensus 69 ~~~~~~l~Dt~G~~~~---------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 139 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERY---------RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139 (189)
T ss_dssp EEEEEEEEECCSCCSS---------CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred eEEEEEEEeCCCcHHH---------hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 3457788987654221 12233568899999999999765433221 1 11111 26799999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+... .....++....+..++++|+++|.|++++.+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182 (189)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 75421 123334445567899999999999999887766543
No 229
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.06 E-value=1.2e-06 Score=77.90 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
..++|+++|.+|||||||+|+|++..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 45799999999999999999999654
No 230
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.06 E-value=1.8e-06 Score=76.04 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=68.1
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||..... .........++.+|++++|+|+.++.+..+. .+ .....+.|+++|+||+|+
T Consensus 71 ~~~~l~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 71 KQVELALWDTAGQE---------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp EEEEEEEECCCCSG---------GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEEEECCCch---------hHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHh
Confidence 34567888865532 1222223468899999999998875433221 11 122237899999999999
Q ss_pred CCHHHH--------------HHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMADR--------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~~--------------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+.... ....++....+. .++.+|+++|.|++++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196 (201)
T ss_dssp TTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 865321 122233445565 7899999999999988776654
No 231
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.05 E-value=4.2e-06 Score=72.43 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=36.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+... .....|.+.... ..+.++. .+.++||||.-
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence 357899999999999999999997542 222222221111 1223322 47899999974
No 232
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.05 E-value=1.3e-05 Score=68.50 Aligned_cols=97 Identities=13% Similarity=0.000 Sum_probs=64.6
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEEEc
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLNR 156 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l----~~k~~ilVlNK 156 (377)
....+.+||...... ...+..+|++++|+|+.++.+..+.. +.... .+.|+++|.||
T Consensus 52 ~~~~l~i~Dt~G~~~--------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (178)
T 2iwr_A 52 QTHLVLIREEAGAPD--------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117 (178)
T ss_dssp EEEEEEEEECSSSCC--------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred EEEEEEEEECCCCch--------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 345678899765422 24678899999999998765433221 12221 25689999999
Q ss_pred cCCC-------CHHHHHHHHHHHHHc-CCeEEEeeCccCCCchhhhhHHHH
Q 017100 157 EDMI-------SMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 157 ~DL~-------~~~~~~~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+|+. ..++... +.... +..++.+|+++|.|++++.+.+.+
T Consensus 118 ~Dl~~~~~~~v~~~~~~~---~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 118 DRISASSPRVVGDARARA---LXADMKRCSYYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp TTCBTTBCCCSCHHHHHH---HHHHHSSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred ccccccccCcCCHHHHHH---HHHhhcCCeEEEEeccccCCHHHHHHHHHH
Confidence 9993 2233333 33333 578899999999999988766543
No 233
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.05 E-value=2.1e-06 Score=74.84 Aligned_cols=105 Identities=10% Similarity=-0.020 Sum_probs=67.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~------~l~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||...... ........+..+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+
T Consensus 64 ~~~~~~i~D~~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 64 KQYLLGLYDTAGQED---------YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp CEEEEEEECCCCSSS---------STTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEEEEEEEECCCCcc---------hhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 345678898765422 112223457899999999999876443221 12222237899999999999
Q ss_pred CCHHH--------------HHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMAD--------------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~--------------~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+... .....++.+..+. .++.+|+++|.|++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 189 (194)
T 2atx_A 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189 (194)
T ss_dssp TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 76421 1222233445565 8899999999999988766543
No 234
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.05 E-value=1.1e-06 Score=76.66 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=68.9
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||.... ..........+..+|++++|+|+.++.+..+. . +.....+.|+++|.||+|+
T Consensus 69 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 69 EEFILHLWDTAGQ---------EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEEEECCCc---------HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 3455678886543 22223334568899999999999876443331 1 2222236899999999999
Q ss_pred CCHH----HHHHHHHHHHHcCCe-EEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMA----DRNAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~----~~~~~~~~~~~~g~~-vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+.. ......++.+..+.. ++.+|+++|.|++++.+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185 (194)
T ss_dssp CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHH
Confidence 7531 122333444556766 9999999999999887765543
No 235
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.05 E-value=3.1e-06 Score=73.69 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=38.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
.++|+++|.+|||||||+|+|.+.. .......|+.+.. .+.++. .+.++||||.-
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCc
Confidence 4789999999999999999999753 2333344443322 233332 46789999975
No 236
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.04 E-value=2.3e-06 Score=72.37 Aligned_cols=103 Identities=16% Similarity=0.078 Sum_probs=66.1
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-------h-cCCCeEEEEEcc
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------L-GNRKRILVLNRE 157 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-------l-~~k~~ilVlNK~ 157 (377)
....+.+||.... ..........+..+|.+++|+|+.++.+..+ +..+ . .+.|+++|+||+
T Consensus 53 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~ 121 (170)
T 1z08_A 53 KRVNLAIWDTAGQ---------ERFHALGPIYYRDSNGAILVYDITDEDSFQK--VKNWVKELRKMLGNEICLCIVGNKI 121 (170)
T ss_dssp CEEEEEEEECCCC----------------CCSSTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHHGGGSEEEEEEECG
T ss_pred EEEEEEEEECCCc---------HhhhhhHHHHhccCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCeEEEEEECc
Confidence 3456788886443 2223333356789999999999877543222 2222 1 367899999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 158 DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
|+.+... .+...++.+..+..++.+|+++|.|++++.+.+.+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9975321 22333445566788999999999999988776544
No 237
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.04 E-value=3.4e-06 Score=73.42 Aligned_cols=105 Identities=8% Similarity=-0.038 Sum_probs=69.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL 159 (377)
....+.+||...... ........+..+|++++|+|+.++.+.... .+..+. .+.|+++|+||+|+
T Consensus 72 ~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 142 (193)
T 2oil_A 72 AAVKAQIWDTAGLER---------YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142 (193)
T ss_dssp EEEEEEEEEESCCCT---------TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred EEEEEEEEeCCCchh---------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCc
Confidence 345678888654321 123344668999999999999875442221 122222 25789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+... ......+....+..++.+|+++|.|++++.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (193)
T 2oil_A 143 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 184 (193)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 75321 22333444566788999999999999988776544
No 238
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.04 E-value=1.2e-06 Score=87.28 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.-|+|+|.+|+|||||+|.|.+.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 35899999999999999999864
No 239
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.04 E-value=4.6e-06 Score=70.86 Aligned_cols=106 Identities=14% Similarity=-0.074 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHH-HHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l-~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D 158 (377)
...+.+||.... ...-...+ ...+..+|.++.|+|..++.+..+.. +..+. .+.|+++|+||+|
T Consensus 51 ~~~~~~~D~~g~--------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~D 122 (175)
T 2nzj_A 51 DTTLVVVDTWEA--------EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122 (175)
T ss_dssp EEEEEEECCC---------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTT
T ss_pred EEEEEEEecCCC--------CccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChh
Confidence 346778886433 22101222 34578899999999988754432211 11111 2679999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+.+..+ ......+....+..++.+|+++|.|++++.+.+.+.
T Consensus 123 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp CTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 975421 122223344567889999999999999887766543
No 240
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.04 E-value=1.1e-05 Score=71.28 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=62.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHH-HHHHHhhhcCeEEEEEecCCCCCCCcH---HHHHHh-------cCCCeEEEEE
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWL-------GNRKRILVLN 155 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k-~l~~~i~~aDlIL~V~Dar~p~~~~~~---~l~~~l-------~~k~~ilVlN 155 (377)
+..+.+||.... ..... .....+..+|++++|+|+......... .+...+ .+.|+++|.|
T Consensus 53 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 53 GNSLTLIDLPGH---------ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp CCEEEEEECCCC---------HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred ccEEEEEECCCC---------hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 466888885433 34444 344668999999999998752211111 122111 1578999999
Q ss_pred ccCCCCHHHHHHHHHH----HH-------------------H-------------c---CCeEEEeeCccC------CCc
Q 017100 156 REDMISMADRNAWATY----FA-------------------K-------------Q---GTKVIFSNGQLG------MGT 190 (377)
Q Consensus 156 K~DL~~~~~~~~~~~~----~~-------------------~-------------~---g~~vi~iSa~~g------~gi 190 (377)
|+|+.+........+. +. + . +..++.+||++| .|+
T Consensus 124 K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv 203 (214)
T 2fh5_B 124 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADI 203 (214)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBC
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccCh
Confidence 9999754322222221 11 0 0 345778999999 999
Q ss_pred hhhhhHHHH
Q 017100 191 MKLSRLAKA 199 (377)
Q Consensus 191 ~~L~~~l~~ 199 (377)
+++.+.+.+
T Consensus 204 ~~lf~~l~~ 212 (214)
T 2fh5_B 204 QDLEKWLAK 212 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776654
No 241
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.04 E-value=2.9e-06 Score=74.36 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=36.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe----CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~l~DTPG~i~ 274 (377)
..++|+++|.+|||||||+|.|.++...........|.......+ .-.+.++||||--.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 357899999999999999999987432211111112222222222 23688999999743
No 242
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.03 E-value=4.6e-07 Score=87.36 Aligned_cols=23 Identities=52% Similarity=0.801 Sum_probs=20.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
...++++|.||||||||+|+|.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 243
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.03 E-value=4.3e-06 Score=71.44 Aligned_cols=105 Identities=8% Similarity=-0.048 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNR 156 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l-----~~k~~ilVlNK 156 (377)
...+.+||... + ..........+..+|++++|+|+.++.+..+. ++.... .+.|+++|+||
T Consensus 57 ~~~~~l~Dt~G--------~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 57 VATMQVWDTAG--------Q-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp CEEEEEECCC-------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred EEEEEEEECCC--------C-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 34667888543 2 33344445668999999999999876433221 111111 35799999999
Q ss_pred cCCCCHHH---HHHHHHHHH-HcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 157 EDMISMAD---RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 157 ~DL~~~~~---~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+|+.+... .....++.. ..+..++.+|+++|.|++++.+.+.+.
T Consensus 128 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp TTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 99964321 122222233 245789999999999999887766543
No 244
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.03 E-value=4.5e-07 Score=92.56 Aligned_cols=57 Identities=30% Similarity=0.508 Sum_probs=44.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe----CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~l~DTPG~i 273 (377)
++++|+++|.+|+|||||+|+|++.. ......+|+|.+.....+ +..+.++||||.-
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 45689999999999999999999754 445577899988644332 3468999999963
No 245
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.03 E-value=2.5e-06 Score=75.60 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH---HHh-cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~---~~l-~~k~~ilVlNK~DL~ 160 (377)
...+.+||.... .+........+..+|++++|+|+.++.+..+. .+. ... .+.|+++|.||+|+.
T Consensus 74 ~~~l~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 74 KVKLQIWDTAGQ---------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEEEEEECCS---------GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCCc---------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 356788886543 23344455678999999999999876433221 111 111 257899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+..+ ......+....+..++.+|+++|.|++++.+.+.+
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (201)
T 2ew1_A 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 185 (201)
T ss_dssp GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4321 12222334456788999999999999988766544
No 246
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.03 E-value=7.7e-06 Score=70.93 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHH-HHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTE-KELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~-k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~D 158 (377)
...+.+||.... .+.. ......+..+|++++|+|+.++.+..+. ++.... .+.|+++|+||+|
T Consensus 68 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (189)
T 1z06_A 68 RIKIQLWDTAGQ---------ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138 (189)
T ss_dssp EEEEEEEECCCS---------HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred EEEEEEEECCCc---------hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 456788886442 3344 4455778999999999999875433221 122222 3679999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccC---CCchhhhh
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLG---MGTMKLSR 195 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g---~gi~~L~~ 195 (377)
+.+..+ ......+....+..++.+|++++ .|+.++.+
T Consensus 139 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~ 180 (189)
T 1z06_A 139 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFM 180 (189)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHH
T ss_pred ccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHH
Confidence 965421 12222334456788999999999 55555443
No 247
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.03 E-value=6.2e-06 Score=71.70 Aligned_cols=55 Identities=27% Similarity=0.290 Sum_probs=36.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++... .....| |.+ ...+.++. .+.++||||.-
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCC--CcceEEEEEEECCEEEEEEEEECCCCh
Confidence 458999999999999999999986542 222222 222 12333433 35679999974
No 248
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.03 E-value=1.1e-06 Score=76.29 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l~-----~k~~ilVlNK~DL 159 (377)
+..+.+||....... .......++.+|++++|+|+.++.+..+ ..+..++. +.|+++|+||+|+
T Consensus 65 ~~~~~~~Dt~G~~~~---------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 65 NISFEVWDLGGQTGV---------RPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp TEEEEEEEECCSSSS---------CCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred CEEEEEEECCCCHhH---------HHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 567788887554211 1112235789999999999988754332 12333332 5789999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~~~~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+....+...+.+. ..+..++++|+++|.|++++.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (189)
T 2x77_A 136 PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181 (189)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHH
Confidence 86533233332221 223468899999999999887766544
No 249
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.03 E-value=1e-06 Score=75.70 Aligned_cols=105 Identities=11% Similarity=-0.023 Sum_probs=65.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~------~l~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||..... +........+..+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+
T Consensus 54 ~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 54 ATVNLGLWDTAGQE---------DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp ----CEEECCCC-C---------TTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEEEECCCCh---------hhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 34556688865432 1222233567899999999999875443221 11111236899999999999
Q ss_pred CCHHHH------------HHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMADR------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~~------------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+.... ....++....+. .++.+|+++|.|++++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp HTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 754331 222333445564 8899999999999988776543
No 250
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.02 E-value=4.5e-06 Score=73.87 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=38.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE--EEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+... ......|+.+.. .+.++. .+.++||||.-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999996542 233333443322 223333 57899999984
No 251
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.02 E-value=1.6e-06 Score=75.96 Aligned_cols=105 Identities=11% Similarity=-0.063 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~------l~~~l~~k~~ilVlNK~DL~ 160 (377)
...+.+||......- .......+..+|++++|+|+.++.+..+.. +.....+.|+++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~---------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEF---------DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp EEEEEEEECCCSTTC---------SSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred EEEEEEEECCCCHHH---------HHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 356778887544211 111224578999999999998764433211 11222378999999999997
Q ss_pred CHHH--------------HHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMAD--------------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~--------------~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+... ......+....+. .++.+|+++|.|++++.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp GCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 5211 1122233344565 88999999999999887766543
No 252
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.02 E-value=2e-06 Score=74.96 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~ 160 (377)
...+.+||..... .........+..+|++++|+|+.++.+..+.. +..+. .+.|+++|+||+|+.
T Consensus 69 ~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 69 QIKLQIWDTAGQE---------SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEEECCTTGG---------GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCch---------hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 4567888865432 22223446788999999999998754332211 11111 267899999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+... ......+..+.+..++.+|+++|.|++++.+.+.+
T Consensus 140 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 180 (191)
T 2a5j_A 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180 (191)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5321 12233444566788999999999999988766543
No 253
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.01 E-value=1.6e-05 Score=69.79 Aligned_cols=106 Identities=16% Similarity=0.001 Sum_probs=68.3
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHH-HHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEc
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNR 156 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l-~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l-----~~k~~ilVlNK 156 (377)
.....+.+||....... ...+ ...+..+|++++|+|..++.+..+. .+..+. .+.|+++|.||
T Consensus 69 ~~~~~l~i~Dt~g~~~~---------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDA---------GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp TEEEEEEEECCCCCSGG---------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred CEEEEEEEEecCCCccc---------hhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 34456788997554321 1112 2457899999999999875443221 122221 26799999999
Q ss_pred cCCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 157 ~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+|+.+... ......+.+..+..++.+|+++|.|++++.+.+.+
T Consensus 140 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184 (195)
T ss_dssp TTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred hhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 99975321 12233344456788999999999999888665543
No 254
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.01 E-value=3.4e-06 Score=72.67 Aligned_cols=103 Identities=10% Similarity=0.010 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH---HHh-cCCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD---QWL-GNRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~---~~l-~~k~~ilVlNK~DL~~ 161 (377)
..+.+||.... ..........+..+|++++|+|+.++.+..+.. +. ... .+.|+++|+||+|+.+
T Consensus 59 ~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 59 VKLQIWDTAGQ---------ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEECCS---------GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEeCCCc---------HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 56778886443 233444556789999999999998754432211 11 111 2678999999999964
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 162 ~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
... ......+....+..++.+|+++|.|++++.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR 169 (186)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 321 23334455667889999999999999988766544
No 255
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.27 E-value=7.5e-07 Score=78.56 Aligned_cols=91 Identities=15% Similarity=-0.006 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHHH--------------HH
Q 017100 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NA 167 (377)
Q Consensus 108 ~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~~~~~--------------~~ 167 (377)
.+........+..+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+.... ..
T Consensus 89 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 3th5_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
Confidence 44445555678999999999999877554432 122222 26789999999999764311 11
Q ss_pred HHHHHHHcCC-eEEEeeCccCCCchhhhhHHH
Q 017100 168 WATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 168 ~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~ 198 (377)
..++.+..+. .++.+||++|.|++++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 169 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 2223333444 778899999999988866543
No 256
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.00 E-value=1.8e-05 Score=78.67 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHHhcCCCeEEEEEccCCCC--
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMIS-- 161 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~---l~~~l~~k~~ilVlNK~DL~~-- 161 (377)
+..+.+||+ ||| +.+.+.+...+..+|++++|+|++++......+ +...+..+++++|+||+|+.+
T Consensus 103 ~~~~~iiDt--------pGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 103 KRKFIIADT--------PGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SEEEEEEEC--------CCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred CceEEEEEC--------CCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 345667774 554 345566667789999999999999865332222 111222346899999999986
Q ss_pred HHH----HHHHHHHHHHcC-----CeEEEeeCccCCCchh
Q 017100 162 MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (377)
Q Consensus 162 ~~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (377)
++. ...+.+++.+.+ ..++++|+++|.|+.+
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 222 234445555566 5688999999999887
No 257
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.00 E-value=6.7e-06 Score=82.84 Aligned_cols=84 Identities=20% Similarity=0.110 Sum_probs=60.9
Q ss_pred HHHhhhcCeEEEEEecCCCCCCC----cHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHc-CCeEEEeeCccCCC
Q 017100 115 KDQLKLMDVVIEVRDARIPLSTT----HPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMG 189 (377)
Q Consensus 115 ~~~i~~aDlIL~V~Dar~p~~~~----~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~-g~~vi~iSa~~g~g 189 (377)
...+..+|++++|+|+..+.+.. ...+...+.++|+++|+||+|+.+...... +.+.+. ...++.+|+++|.|
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTTTBS
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECCCCC
Confidence 34579999999999999887652 233434445789999999999987654332 223332 36789999999999
Q ss_pred chhhhhHHHHh
Q 017100 190 TMKLSRLAKAL 200 (377)
Q Consensus 190 i~~L~~~l~~l 200 (377)
+++|.+.+.+.
T Consensus 385 I~eL~~~i~~~ 395 (476)
T 3gee_A 385 IDTLKQHMGDL 395 (476)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 99987776543
No 258
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.00 E-value=2.4e-06 Score=75.21 Aligned_cols=103 Identities=11% Similarity=0.039 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~---l-~~k~~ilVlNK~DL~~ 161 (377)
..+.+||. ||+ .+........++.+|++++|+|+.++.+..+.. +..+ . .+.|+++|+||+|+.+
T Consensus 74 ~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 74 VKLQIWDT--------AGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp EEEEEECC--------TTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred eEEEEEcC--------CCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 56778885 443 344444557789999999999998754332211 1111 1 2678999999999964
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 162 ~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
... ......+....+..++.+|+++|.|++++.+.+.+
T Consensus 145 ~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 145 EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 322 23334455667888999999999999988766544
No 259
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.00 E-value=6.8e-07 Score=91.22 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=38.2
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCce---------------ec------cCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMC---------------PA------APRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~---------------~v------~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
.+|+|+|.+|||||||+|+|+..... .+ ...+|+|.+.....+ +..+.|+||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 47999999999999999999621111 01 112566655433222 4568999999986
Q ss_pred c
Q 017100 274 P 274 (377)
Q Consensus 274 ~ 274 (377)
.
T Consensus 94 d 94 (528)
T 3tr5_A 94 D 94 (528)
T ss_dssp T
T ss_pred h
Confidence 4
No 260
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.00 E-value=3.2e-06 Score=81.09 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=36.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEE--e-CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.... ...| |.+..... . +..+.++||||--
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCH
Confidence 3578999999999999999999976532 2233 44433322 2 3468899999953
No 261
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.99 E-value=4.1e-06 Score=72.98 Aligned_cols=106 Identities=10% Similarity=-0.077 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh---cCCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL---GNRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l---~~k~~ilVlNK~D 158 (377)
...+.+||.... ..........+..+|++++|+|+.++.+..+.. +.... .+.|+++|+||+|
T Consensus 55 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~D 125 (199)
T 2gf0_A 55 VCTLQITDTTGS---------HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125 (199)
T ss_dssp EEEEEEEECCGG---------GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTT
T ss_pred EEEEEEEeCCCh---------HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 446778886443 222233446688999999999998654322211 22222 2579999999999
Q ss_pred CCCHHH-HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 159 L~~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+.+... ......+....+..++.+|+++|.|++++.+.+.+..
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 126 ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp CSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 975322 1222233455678899999999999999887766543
No 262
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.99 E-value=7.3e-06 Score=78.57 Aligned_cols=106 Identities=9% Similarity=0.053 Sum_probs=68.6
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc-----CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG-----NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l~-----~k~~ilVlNK~D 158 (377)
.+..+.+||.... ..........+..+|++|+|+|+.++.+.... .+..++. +.|+++|+||+|
T Consensus 207 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~D 277 (329)
T 3o47_A 207 KNISFTVWDVGGQ---------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277 (329)
T ss_dssp TTEEEEEEECC--------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CcEEEEEEECCCC---------HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECcc
Confidence 3456677775432 44444556778999999999999876543322 2333332 678999999999
Q ss_pred CCCHHHHHHHHHHHHH-----cCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 159 L~~~~~~~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+.+......+...+.. .+..++.+|+++|.|++++.+.+.+.
T Consensus 278 l~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~ 324 (329)
T 3o47_A 278 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 324 (329)
T ss_dssp STTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 9865444444443322 23468899999999999887766543
No 263
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.99 E-value=2.1e-06 Score=76.37 Aligned_cols=105 Identities=7% Similarity=-0.053 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l~-~k~~ilVlNK~DL~~ 161 (377)
..+.+||..... +........+..+|++++|+|+.++.+..+. .+..... +.|+++|+||+|+.+
T Consensus 61 ~~~~l~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 61 IKFNVWDTAGQE---------KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp EEEEEEEECSGG---------GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred EEEEEEecCCch---------hhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 457788865432 1222233567889999999999876543332 1112222 579999999999986
Q ss_pred HHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 162 MADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 162 ~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.... .....+....+..++.+||++|.|++++.+.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp ---CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 5321 222233345678899999999999999877765543
No 264
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.98 E-value=5.2e-06 Score=71.89 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=36.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccC-------CCCceeEEEEEE-----eC---CceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVR-----FG---KDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~-------~pgtT~~~~~~~-----~~---~~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|.|.+........ ....|....... ++ -.+.++||||..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 35789999999999999999998653222111 112343333221 11 147899999964
No 265
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.98 E-value=4.9e-06 Score=71.55 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHH-HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAK-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~-~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~ 160 (377)
+..+.+||....... ....+. ........+..+|++++|+|+.++.+.....+...+ .+.|+++|+||+|+.
T Consensus 51 ~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 51 GMPLHIIDTAGLREA--SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp TEEEEEEECCCCSCC--SSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred CeEEEEEECCCcccc--hhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 345788997654221 111221 123344568999999999999887765543322211 157999999999985
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+... .+ ....+..++++||++|.|++++.+.+.+.
T Consensus 129 ~~~~--~~---~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 129 GETL--GM---SEVNGHALIRLSARTGEGVDVLRNHLKQS 163 (172)
T ss_dssp CCCC--EE---EEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cchh--hh---hhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 3211 01 11234578899999999999987776554
No 266
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.97 E-value=1.6e-06 Score=77.43 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=68.4
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HH----HHHHhcCCCeEEEEEcc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL----MDQWLGNRKRILVLNRE 157 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~----l~~~l~~k~~ilVlNK~ 157 (377)
......+.+||..... +........+..+|++++|+|+.++.+..+ .. +.....+.|+++|.||+
T Consensus 71 ~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 141 (214)
T 3q3j_B 71 EEQRVELSLWDTSGSP---------YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 141 (214)
T ss_dssp --CEEEEEEEEECCSG---------GGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECG
T ss_pred CCEEEEEEEEECCCCH---------hHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 3344667888865542 222233356889999999999987654332 11 11222367999999999
Q ss_pred CCCCH--------------HHHHHHHHHHHHcCC-eEEEeeCccCCC-chhhhhHHHHh
Q 017100 158 DMISM--------------ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKAL 200 (377)
Q Consensus 158 DL~~~--------------~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~l~~l 200 (377)
|+.+. -.......+.+..+. .++.+||++|.| ++++.+.+.+.
T Consensus 142 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp GGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHH
Confidence 99642 011122233445576 899999999998 98887766544
No 267
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.97 E-value=4.7e-06 Score=74.37 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=36.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEE-EEEeC-C--ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFG-K--DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~-~~~~~-~--~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++... .....|.+..+.. .+.++ . .+.++||||.-
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 357999999999999999999997542 2222222222211 12232 2 46799999964
No 268
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.97 E-value=7.6e-06 Score=71.84 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=37.5
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCC--ceeEEEEEEeCC---ceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pg--tT~~~~~~~~~~---~~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|++... .....|. ++.....+.+++ .+.+.||||.-.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 46899999999999999999997542 2222233 333333444443 356799999753
No 269
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.97 E-value=1.5e-05 Score=80.29 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=63.5
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHH------HhcCCCeEEEEE
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQ------WLGNRKRILVLN 155 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~----~~~~l~~------~l~~k~~ilVlN 155 (377)
.+..+.+||. ||| +.+.+.+...+..+|++|+|+|++.+... ...+..+ .+..+++++|+|
T Consensus 109 ~~~~~~iiDT--------PG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviN 179 (483)
T 3p26_A 109 HRANFTIVDA--------PGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 179 (483)
T ss_dssp SSCEEEEECC--------CCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCceEEEEEC--------CCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEE
Confidence 4456677775 454 55677777889999999999999886432 1122111 123467999999
Q ss_pred ccCCCC--HHHH----HHHHHHHHHcC-----CeEEEeeCccCCCchhh
Q 017100 156 REDMIS--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 156 K~DL~~--~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (377)
|+|+.+ .... ....+++...| ..++++||++|.|+.++
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 999986 2222 22223344333 46889999999999753
No 270
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.96 E-value=3.2e-06 Score=73.90 Aligned_cols=103 Identities=10% Similarity=0.089 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||..... .........+..+|++++|+|+.++.+..+. .+..++ .+.|+++|.||+|+
T Consensus 66 ~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (190)
T 1m2o_B 66 NIKFTTFDLGGHI---------QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136 (190)
T ss_dssp TEEEEEEECCCSG---------GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCCH---------HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCC
Confidence 3667888865442 1122233557899999999999876543221 123332 36799999999999
Q ss_pred CCHHHHHHHHHHHHH------------cCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMADRNAWATYFAK------------QGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~~~~~~~~~~~------------~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
......++..+++.. .+..++.+|+++|.|++++.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 137 PNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp TTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 753222333333321 234688999999999988876654
No 271
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.96 E-value=4.3e-05 Score=73.90 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCcCCCchH-HHHHHH-HHHHHhhhcCeEEEEEecCCCCCCC-cH--H-HHHHh---cCCCeEEEEEcc
Q 017100 87 DADLYYWTKSLRPVQWYPGH-IAKTEK-ELKDQLKLMDVVIEVRDARIPLSTT-HP--L-MDQWL---GNRKRILVLNRE 157 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh-~~~~~k-~l~~~i~~aDlIL~V~Dar~p~~~~-~~--~-l~~~l---~~k~~ilVlNK~ 157 (377)
+.++.+||+.... +++.+ ....+. .+......+|.+++|+|+..+.+.. .. . +..+. .++|+++|+||+
T Consensus 213 ~~~~~l~Dt~G~~--~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~ 290 (357)
T 2e87_A 213 YFRYQIIDTPGLL--DRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKI 290 (357)
T ss_dssp TEEEEEEECTTTS--SSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCT
T ss_pred CceEEEEeCCCcc--ccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 4557888875431 22211 111122 2223345699999999987654221 11 1 22222 278999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 158 DMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 158 DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
|+..........+++...+..++++||++|.|+++|.+.+.+..
T Consensus 291 Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 291 DVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 99987766555566666678899999999999999887776544
No 272
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.20 E-value=1.1e-06 Score=77.49 Aligned_cols=56 Identities=23% Similarity=0.211 Sum_probs=36.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEe-CC--ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK--DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~--~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|++.. .......+|.+... +.. +. .+.++||||.-
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89 (204)
Confidence 35789999999999999999998543 22333344433221 122 22 35589999974
No 273
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.95 E-value=1.6e-05 Score=68.98 Aligned_cols=102 Identities=10% Similarity=-0.012 Sum_probs=65.6
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEEc
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLNR 156 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~l-----~~k~~ilVlNK 156 (377)
......+.+||....... . .+..+|++++|+|+.++.+..+. . +..+. .+.|+++|.||
T Consensus 63 ~~~~~~l~i~Dt~G~~~~---------~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 128 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPEL---------Q-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQ 128 (184)
T ss_dssp TTEEEEEEEEECSSSCCH---------H-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEEC
T ss_pred CCEEEEEEEEECCCChhh---------h-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 334466788997654221 1 67889999999999876543331 1 12221 24689999999
Q ss_pred cCCCCH--H--HHHHHHHHHHHcC-CeEEEeeCccCCCchhhhhHHHH
Q 017100 157 EDMISM--A--DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 157 ~DL~~~--~--~~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+|+... . ......++....+ ..++.+|+++|.|++++.+.+.+
T Consensus 129 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 129 DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQ 176 (184)
T ss_dssp TTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 999421 1 1122233344555 78899999999999988766544
No 274
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.95 E-value=8.8e-06 Score=83.07 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=46.5
Q ss_pred CCCchhhhhHHHHhhhhhhhhhcccCCCCCceeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeEEE------EEE
Q 017100 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLK------WVR 259 (377)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~------~~~ 259 (377)
..|+..+.+.++++....... ........++|++||.||||||||+|+|++.... ...+..|.+.... .+.
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g--~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~ 90 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKG--EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE 90 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTT--CCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGT
T ss_pred HhCHHHHHHHHHHHHHhhccC--cccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecccccccee
Confidence 456777777777765421110 1101234689999999999999999999975421 1112222222211 111
Q ss_pred e-----CCceEEEcCCcc
Q 017100 260 F-----GKDLEFLDSPGI 272 (377)
Q Consensus 260 ~-----~~~~~l~DTPG~ 272 (377)
+ +..+.+.||||.
T Consensus 91 ~~~~~~~~~~~i~Dt~G~ 108 (535)
T 3dpu_A 91 NDDELKECLFHFWDFGGQ 108 (535)
T ss_dssp TCSTTTTCEEEEECCCSC
T ss_pred ecCCCceEEEEEEECCcH
Confidence 1 245899999994
No 275
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.95 E-value=4.3e-06 Score=81.30 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=30.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCC------CceeEEE--EEEe--CC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVLK--WVRF--GK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p------gtT~~~~--~~~~--~~---~~~l~DTPG~i 273 (377)
..++|++||.+|||||||+|+|.+......+..+ ..|.... ...+ +. .+.++||||+-
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 3578999999999999999999876543332221 2233322 2222 11 47899999993
No 276
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.95 E-value=6.5e-06 Score=71.93 Aligned_cols=104 Identities=11% Similarity=-0.021 Sum_probs=68.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l--~~k~~ilVlNK~D 158 (377)
....+.+||..... . .......+..+|++++|+|+.++.+..+. .+.... .+.|+++|+||+|
T Consensus 74 ~~~~~~l~Dt~G~~--------~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 143 (196)
T 2atv_A 74 EVVSMEILDTAGQE--------D--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143 (196)
T ss_dssp EEEEEEEEECCCCC--------C--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred EEEEEEEEECCCCC--------c--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcc
Confidence 34567788865432 2 23344678999999999999876443221 122222 3678999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccCC-CchhhhhHHHH
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGM-GTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~-gi~~L~~~l~~ 199 (377)
+.+... ......+....+..++.+|+++|. |++++.+.+.+
T Consensus 144 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~ 187 (196)
T 2atv_A 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCR 187 (196)
T ss_dssp GGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHH
Confidence 975321 122223344557889999999999 99888766544
No 277
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.95 E-value=5.8e-06 Score=73.40 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=37.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEE-EEEEeCC---ceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|+|.+... .....|.+..+. ..+.++. .+.++||||.-
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 357899999999999999999997542 222223222222 1223332 47899999964
No 278
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.95 E-value=2.6e-06 Score=75.30 Aligned_cols=105 Identities=15% Similarity=0.019 Sum_probs=67.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL 159 (377)
....+.+||.... ..........+..+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+
T Consensus 76 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 76 KPVNLGLWDTAGL---------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp CEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred EEEEEEEEECCCc---------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 3455668886543 22223333568899999999999876543332 111222 27899999999999
Q ss_pred CCHHHH--------------HHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMADR--------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~~--------------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
.+.... .....+.+..+. .++.+||++|.|++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 764331 122233444553 5899999999999988766543
No 279
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.95 E-value=3e-06 Score=74.60 Aligned_cols=105 Identities=10% Similarity=-0.009 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~---l-~~k~~ilVlNK~DL~ 160 (377)
...+.+||..... +........+..+|++++|+|+.++.+..... +..+ . .+.|+++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~~---------~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 56 TVKLQIWDTAGQE---------RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEECCTTTT---------TTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCChH---------HHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 3567888865432 12222335688999999999998754332211 1111 1 257899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+... ......+....+..++++|+++|.|++++.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 168 (206)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 6421 122233445667889999999999999887766543
No 280
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.94 E-value=2.6e-06 Score=75.10 Aligned_cols=103 Identities=10% Similarity=0.025 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (377)
+..+.+||.... ..........+..+|.+++|+|+.++.+..+ ..+..++ .+.|+++|.||+|+
T Consensus 68 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 138 (198)
T 1f6b_A 68 GMTFTTFDLGGH---------IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138 (198)
T ss_dssp TEEEEEEEECC-------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred CEEEEEEECCCc---------HhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCc
Confidence 356778886432 2222333356889999999999987643322 1233332 36799999999999
Q ss_pred CC---HHHHHHHHHHHH--------------HcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 IS---MADRNAWATYFA--------------KQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~---~~~~~~~~~~~~--------------~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.. .++...+..... ..+..++.+||++|.|++++.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp TTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 74 333333322110 0234688999999999988876654
No 281
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.93 E-value=1e-05 Score=70.79 Aligned_cols=57 Identities=16% Similarity=0.332 Sum_probs=38.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC-c--eEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK-D--LEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~-~--~~l~DTPG~i~ 274 (377)
.++|+++|.+|||||||+|+|.+... .....|.++.+ ...+.+++ . +.+.||||...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 47899999999999999999997542 22333433333 33444443 3 34699999853
No 282
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.93 E-value=2.2e-06 Score=86.54 Aligned_cols=57 Identities=23% Similarity=0.441 Sum_probs=34.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCc------eeccCCCCceeEEEE--EEe-CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRM------CPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~------~~v~~~pgtT~~~~~--~~~-~~~~~l~DTPG~i 273 (377)
.++|+++|.+|+|||||+|+|++... ...+..+|+|.+... +.. +..+.++||||.-
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~ 84 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA 84 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH
Confidence 57899999999999999999997551 334567788987643 233 3478999999973
No 283
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.93 E-value=1.5e-05 Score=67.83 Aligned_cols=104 Identities=6% Similarity=-0.068 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNR 156 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l-----~~k~~ilVlNK 156 (377)
...+.+||.... ..........+..+|+++.|+|+.++.+..+. ++.... .+.|+++|+||
T Consensus 55 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 125 (177)
T 1wms_A 55 FVTMQIWDTAGQ---------ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125 (177)
T ss_dssp EEEEEEEECCCC---------GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEEC
T ss_pred EEEEEEEeCCCc---------hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEEC
Confidence 356788886543 22334444678999999999999876433221 122222 35699999999
Q ss_pred cCCCCHHH-HHHHHHHHH-HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 157 EDMISMAD-RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 157 ~DL~~~~~-~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+|+..... .+...++.. ..+..++.+|+++|.|++++.+.+.+
T Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 126 IDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp TTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred CcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 99974221 222223333 34578999999999999888766544
No 284
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.93 E-value=1.6e-06 Score=87.77 Aligned_cols=57 Identities=26% Similarity=0.406 Sum_probs=44.2
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
++++|+++|.+|+|||||+|+|++.. ...+..+|+|.+.....+ +..+.++||||.-
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe 62 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHA 62 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcH
Confidence 45689999999999999999998643 445666888887644333 4568999999974
No 285
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.92 E-value=1.2e-06 Score=87.80 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=39.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCC-ce-----------------------------eccCCCCceeEEEEEEe---CCc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRR-MC-----------------------------PAAPRPGVTRVLKWVRF---GKD 263 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~-~~-----------------------------~v~~~pgtT~~~~~~~~---~~~ 263 (377)
.++|+++|.+|+|||||+|+|++.. .. ..+...|+|.+.....+ +..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 5789999999999999999998531 00 00113678877543333 346
Q ss_pred eEEEcCCccc
Q 017100 264 LEFLDSPGII 273 (377)
Q Consensus 264 ~~l~DTPG~i 273 (377)
+.++||||..
T Consensus 87 ~~iiDtPGh~ 96 (458)
T 1f60_A 87 VTVIDAPGHR 96 (458)
T ss_dssp EEEEECCCCT
T ss_pred EEEEECCCcH
Confidence 8999999963
No 286
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.91 E-value=2.1e-05 Score=76.04 Aligned_cols=103 Identities=14% Similarity=0.021 Sum_probs=68.2
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD 164 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~ 164 (377)
..+.+++++|+..-. + .....+..+|++++|+|+...... ..+...+.++|.++|+||+|+.+...
T Consensus 169 ~~~~~~iiiDTpGi~-~-----------~~~~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~ 234 (355)
T 3p32_A 169 AAGFDVILIETVGVG-Q-----------SEVAVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKE 234 (355)
T ss_dssp HTTCCEEEEEECSCS-S-----------HHHHHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHH
T ss_pred hCCCCEEEEeCCCCC-c-----------HHHHHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhH
Confidence 357899999976421 1 122346999999999997643222 11112223569999999999987654
Q ss_pred HHHHHHHHHHc-----------CCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 165 RNAWATYFAKQ-----------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 165 ~~~~~~~~~~~-----------g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.......+.+. +.+++++|+++|.|+++|.+.+.+..
T Consensus 235 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 235 ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 43333333221 46799999999999999888776553
No 287
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.91 E-value=3.6e-06 Score=82.15 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=37.6
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
+|+++|.+|+|||||+|+|+ ..|+|.+.....+ +..+.++||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 79999999999999999998 3466766554444 45689999999853
No 288
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.90 E-value=3.3e-06 Score=74.67 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=67.4
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||...... ........+..+|++++|+|+.++.+..+. .+ .....+.|+++|+||+|+
T Consensus 71 ~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (207)
T 2fv8_A 71 KQVELALWDTAGQED---------YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141 (207)
T ss_dssp EEEEEEEEECTTCTT---------CTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEEEECCCcHH---------HHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhh
Confidence 345678898755421 112223467899999999998875432221 11 122237899999999999
Q ss_pred CCHHHHHH--------------HHHHHHHcCC-eEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMADRNA--------------WATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~~~--------------~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
.+...... ...+....+. .++.+|+++|.|++++.+.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 76432221 1122234454 78999999999999987766543
No 289
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.90 E-value=9.4e-06 Score=76.70 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=40.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEE--EEeC-Cc--eEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG-KD--LEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~-~~--~~l~DTPG~i 273 (377)
..++|+++|.+|||||||+|++++.. ..+...+||.+... +.++ .. +.++||||.-
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCch
Confidence 45789999999999999999999643 34455566665433 2333 23 4599999974
No 290
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.90 E-value=1.9e-05 Score=67.20 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=56.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcC---------CeEEEeeC
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQG---------TKVIFSNG 184 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g---------~~vi~iSa 184 (377)
..+..+|++++|+|+.++......+....+ .+.|+++|+||+|+.+... ......+...+ ..++++|+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 446889999999998876443332222222 3789999999999986321 12222222211 37889999
Q ss_pred ccCCCchhhhhHHHHhh
Q 017100 185 QLGMGTMKLSRLAKALA 201 (377)
Q Consensus 185 ~~g~gi~~L~~~l~~l~ 201 (377)
++|.|++++.+.+.+..
T Consensus 153 ~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVS 169 (178)
T ss_dssp SSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999998877765543
No 291
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.89 E-value=0.00014 Score=62.46 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=65.5
Q ss_pred cEEEEcCCCC--CcCCCchHHHHHHHHHHHH----hhhcCeEEEEEecCCCCC-----------CCcHHHHHHh--cCCC
Q 017100 89 DLYYWTKSLR--PVQWYPGHIAKTEKELKDQ----LKLMDVVIEVRDARIPLS-----------TTHPLMDQWL--GNRK 149 (377)
Q Consensus 89 d~vi~d~~L~--~~qw~PGh~~~~~k~l~~~----i~~aDlIL~V~Dar~p~~-----------~~~~~l~~~l--~~k~ 149 (377)
.+.+||...- ...|....+.+........ .+.+++++.|.|+..... ..+.++...+ .+.|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 6788887642 2234444445555555444 445668888888643210 0011122222 3789
Q ss_pred eEEEEEccCCCCHH--HHHHHHHHHHHcCC-------eEEEeeCccCCCchhhhhHHHHh
Q 017100 150 RILVLNREDMISMA--DRNAWATYFAKQGT-------KVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 150 ~ilVlNK~DL~~~~--~~~~~~~~~~~~g~-------~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+++|+||+|+.... ..+.+. ++.+. .++++|+++|.|++++.+.+.+.
T Consensus 125 iilv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 125 TIVAVNKLDKIKNVQEVINFLA---EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 181 (190)
T ss_dssp EEEEEECGGGCSCHHHHHHHHH---HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred eEEEeehHhccCcHHHHHHHHH---HHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence 99999999998753 233333 33343 47899999999999887766544
No 292
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.88 E-value=9.1e-06 Score=78.40 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=58.9
Q ss_pred HHHHHHhhhcCeEEEEEecCCCC---CCCcH-----HHHHH---hcCCCeEEEEEccCCCCHHH-HHHHHHHHHHcCCeE
Q 017100 112 KELKDQLKLMDVVIEVRDARIPL---STTHP-----LMDQW---LGNRKRILVLNREDMISMAD-RNAWATYFAKQGTKV 179 (377)
Q Consensus 112 k~l~~~i~~aDlIL~V~Dar~p~---~~~~~-----~l~~~---l~~k~~ilVlNK~DL~~~~~-~~~~~~~~~~~g~~v 179 (377)
..+.+.++++|++|+|+|+.+.. ...+. ++..+ +.++|+++|+||+|+.+..+ .+.+.+.+. ....+
T Consensus 228 ~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-~~~~v 306 (342)
T 1lnz_A 228 HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-DDYPV 306 (342)
T ss_dssp HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-SCCCB
T ss_pred HHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh-cCCCE
Confidence 44556688999999999996532 11111 12222 13689999999999987643 223322221 11578
Q ss_pred EEeeCccCCCchhhhhHHHHhhh
Q 017100 180 IFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
+++|++++.|+++|.+.+.+...
T Consensus 307 ~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 307 FPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp CCCSSCCSSTTHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHHHHHh
Confidence 89999999999998887765543
No 293
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.88 E-value=5.1e-06 Score=81.69 Aligned_cols=57 Identities=25% Similarity=0.397 Sum_probs=41.5
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCc----e-----------eccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRM----C-----------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~----~-----------~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
.++|+++|.+|+|||||+|+|++... . ..+...|+|.+.....+ +..+.++||||..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 46899999999999999999986310 0 01124678887655444 3578999999984
No 294
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.87 E-value=4.6e-06 Score=84.20 Aligned_cols=109 Identities=10% Similarity=0.009 Sum_probs=70.8
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEcc
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNRE 157 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~--~l~~~l-----~~k~~ilVlNK~ 157 (377)
..+..+.+||+... +.........++++|++|+|+|+.++.+..+. .+..++ .++|+++|+||+
T Consensus 363 ~~~~~~~l~Dt~G~---------~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 433 (497)
T 3lvq_E 363 YKNVKFNVWDVGGQ---------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 433 (497)
T ss_dssp SSSCEEEEEEECCC---------GGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECC
T ss_pred eCCEEEEEEECCCc---------HHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECC
Confidence 34567788887653 22333345678999999999999876433221 233332 268999999999
Q ss_pred CCCCHHHHHHHHHHHHH-----cCCeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 158 DMISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 158 DL~~~~~~~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
||.+........+.+.. .+..++++||++|.|++++.+.+.+...
T Consensus 434 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 434 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp SSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred CCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99754332322222211 1235889999999999998887765543
No 295
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.87 E-value=5.3e-06 Score=81.85 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=30.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc--eeccCCCCceeEEE
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK 256 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~--~~v~~~pgtT~~~~ 256 (377)
..++|+++|.+|+|||||+|+|++... ...+..+|+|.+..
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 51 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG 51 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEe
Confidence 457899999999999999999996432 22333578887643
No 296
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.87 E-value=1.6e-05 Score=69.48 Aligned_cols=103 Identities=9% Similarity=-0.054 Sum_probs=65.2
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHH---HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEE
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKEL---KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVL 154 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l---~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-------~~k~~ilVl 154 (377)
.....+.+||...... ..... ...+..+|++++|+|+.++.......+..++ .+.|+++|.
T Consensus 66 ~~~~~l~i~Dt~G~~~---------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~ 136 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMD---------FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136 (196)
T ss_dssp TTSCCEEEEECCSSCC---------TTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeeEEEEEECCCCHH---------HHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 4557889999876532 11122 4567889999999999876211112232222 267999999
Q ss_pred EccCCCCHHHH----HH----HHHHHH-----HcCCeEEEeeCccCCCchhhhhHH
Q 017100 155 NREDMISMADR----NA----WATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 155 NK~DL~~~~~~----~~----~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
||+||.+.+.. +. ..+.+. ..+..++.+|+++ .|++++.+.+
T Consensus 137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred eccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 99999874321 11 112222 2356788999999 9988876544
No 297
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.87 E-value=5.9e-06 Score=82.19 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+++|.+|+|||||+|+|++..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhc
Confidence 4789999999999999999998543
No 298
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.86 E-value=4.7e-06 Score=73.14 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNR 156 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-----~l~~~l-----~~k~~ilVlNK 156 (377)
...+.+||..... .........+..+|++++|+|+.++.+..+. ++.... .+.|+++|+||
T Consensus 56 ~~~~~l~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 56 LVTMQIWDTAGQE---------RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp EEEEEEEEECSSG---------GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred EEEEEEEeCCCcH---------HHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 3567888865431 1112223457899999999999876433221 111222 35799999999
Q ss_pred cCCCCHHH-HHHHHHHHH-HcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 157 EDMISMAD-RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 157 ~DL~~~~~-~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+|+.+... ......+.. ..+..++.+|+++|.|++++.+.+.+.
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172 (207)
T ss_dssp TTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 99974321 222233333 446789999999999999987766543
No 299
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.85 E-value=2.7e-06 Score=74.84 Aligned_cols=106 Identities=9% Similarity=-0.126 Sum_probs=67.6
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc-----CCCeEEEEEccC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG-----NRKRILVLNRED 158 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l~-----~k~~ilVlNK~D 158 (377)
....+.+||...... ........+..+|++++|+|+.++.+..... +..+.. +.|+++|+||+|
T Consensus 70 ~~~~~~l~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 140 (201)
T 3oes_A 70 DEFHLHLVDTAGQDE---------YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140 (201)
T ss_dssp -CEEEEEEEECCCCT---------TCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTT
T ss_pred EEEEEEEEECCCccc---------hHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 456678888765321 1122334678899999999998754332211 122211 579999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 159 L~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+.+... ......+....+..++.+|+++|.|++++.+.+.+.
T Consensus 141 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (201)
T 3oes_A 141 LSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE 184 (201)
T ss_dssp CGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 975432 122223445567889999999999999887665543
No 300
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.85 E-value=5.7e-06 Score=79.70 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=26.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhc------CCceeccCCCCcee
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLK------RRMCPAAPRPGVTR 253 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~------~~~~~v~~~pgtT~ 253 (377)
....|+++|+||+|||||+|.|.+ .+...++.-|++|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 356799999999999999999963 33344444455443
No 301
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.85 E-value=3.6e-06 Score=82.99 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=41.8
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC---C----ce-e--c------cCCCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR---R----MC-P--A------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~---~----~~-~--v------~~~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
..++|+++|.+|+|||||+|+|++. . .. . . +...|+|.+.....+ +..+.++||||...
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 3578999999999999999999863 1 00 0 0 114577877654443 35789999999853
No 302
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.84 E-value=3.7e-05 Score=70.74 Aligned_cols=80 Identities=11% Similarity=0.000 Sum_probs=55.4
Q ss_pred hcCeEEEEEecCCC--CCCCcHH--HHHH-----hcCCCeEEEEEccCCCCHHHHHHHHHHHHH-cCCeEEEeeCccCCC
Q 017100 120 LMDVVIEVRDARIP--LSTTHPL--MDQW-----LGNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG 189 (377)
Q Consensus 120 ~aDlIL~V~Dar~p--~~~~~~~--l~~~-----l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~-~g~~vi~iSa~~g~g 189 (377)
.+|++++|+|+.++ .+..+.. +..+ ..+.|+++|.||+||.+........++... .+..++.+||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999886 4432211 1111 136899999999999876655444444444 367899999999999
Q ss_pred chhhhhHHHH
Q 017100 190 TMKLSRLAKA 199 (377)
Q Consensus 190 i~~L~~~l~~ 199 (377)
++++.+.+.+
T Consensus 242 v~elf~~l~~ 251 (255)
T 3c5h_A 242 VDLAFSTLVQ 251 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888766543
No 303
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.82 E-value=7e-06 Score=82.38 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=62.7
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhh
Q 017100 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (377)
Q Consensus 115 ~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (377)
...+..+|++++|+|+..+.+..+.++.+.+..+|+++|+||+|+.+........+ + ..+..++.+|+++|.|+++|.
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~~~-~-~~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEY-P-ENITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTCCC-C-TTCCCEEEEBTTTTBSHHHHH
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHHHH-h-ccCCcEEEEECCCCCCHHHHH
Confidence 34578899999999999877766666666667789999999999987654221000 0 024678999999999999988
Q ss_pred hHHHHh
Q 017100 195 RLAKAL 200 (377)
Q Consensus 195 ~~l~~l 200 (377)
+.+.+.
T Consensus 376 ~~i~~~ 381 (462)
T 3geh_A 376 TAILEI 381 (462)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 304
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.81 E-value=7.7e-06 Score=71.14 Aligned_cols=105 Identities=10% Similarity=-0.043 Sum_probs=66.9
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEEE
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLN 155 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l----~~k~~ilVlN 155 (377)
.....+.+||...... ... +...+..+|.++.|+|..++.+..+.. +.... .+.|+++|.|
T Consensus 66 ~~~~~l~i~Dt~G~~~---------~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 66 HQPVHLRVMDTADLDT---------PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp TEEEEEEEEECCC------------CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred CEEEEEEEEECCCCCc---------chh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence 3445678898755421 111 235788999999999998654332211 11111 3689999999
Q ss_pred ccCCCCHHH--HHHHHHHHHHcCCeEEEeeC-ccCCCchhhhhHHHH
Q 017100 156 REDMISMAD--RNAWATYFAKQGTKVIFSNG-QLGMGTMKLSRLAKA 199 (377)
Q Consensus 156 K~DL~~~~~--~~~~~~~~~~~g~~vi~iSa-~~g~gi~~L~~~l~~ 199 (377)
|+|+..... .....++.++.+..++.+|+ ++|.|++++.+.+.+
T Consensus 136 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 136 KLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp CGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHH
T ss_pred CcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHH
Confidence 999964321 12233344566788999999 899999888765543
No 305
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.80 E-value=7.3e-06 Score=86.31 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=35.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce-----------eccC------CCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~-----------~v~~------~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
..+|+++|.+|+|||||+|+|+..... .+.+ .+|+|.......+ +..+.|+||||...
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 468999999999999999999842111 1111 3566665432222 45689999999964
No 306
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.80 E-value=1.7e-05 Score=75.10 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=62.4
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC-HHHHHHHHHHHHH-cCC-eEEEeeCccCCCc
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAWATYFAK-QGT-KVIFSNGQLGMGT 190 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~-~~~~~~~~~~~~~-~g~-~vi~iSa~~g~gi 190 (377)
..++.+|++++|+|+.. .+..+..+.+.+. +.|.++++||+|+.. ......+.+.+.+ .+. .++++|+++|.|+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 44688999999999977 5544444555554 789999999999987 5555455554543 343 6889999999999
Q ss_pred hhhhhHHHHhh
Q 017100 191 MKLSRLAKALA 201 (377)
Q Consensus 191 ~~L~~~l~~l~ 201 (377)
..|.+.+.+..
T Consensus 163 ~~l~~~i~~~l 173 (301)
T 1ega_A 163 DTIAAIVRKHL 173 (301)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 98887766543
No 307
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.80 E-value=4.4e-05 Score=74.96 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCC-H
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS-M 162 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~-~ 162 (377)
+..+.+||. ||| +.+.+.+...+..+|++++|+|+.........+...++ .+.| +++++||+|+.+ .
T Consensus 65 ~~~~~iiDt--------pG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 135 (397)
T 1d2e_A 65 ARHYAHTDC--------PGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS 135 (397)
T ss_dssp SCEEEEEEC--------SSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH
T ss_pred CeEEEEEEC--------CCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH
Confidence 455677774 777 45666777778999999999999886533222222222 2667 579999999985 3
Q ss_pred HHH----HHHHHHHHHcC-----CeEEEeeCccCCC
Q 017100 163 ADR----NAWATYFAKQG-----TKVIFSNGQLGMG 189 (377)
Q Consensus 163 ~~~----~~~~~~~~~~g-----~~vi~iSa~~g~g 189 (377)
+.. .+..+++.+.+ .+++++||++|.+
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 136 EMVELVELEIRELLTEFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhccc
Confidence 211 23334555555 4789999998653
No 308
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.79 E-value=1.5e-05 Score=67.72 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHh--hhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMA 163 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i--~~aDlIL~V~Dar~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~ 163 (377)
+..+.+||...... +.+..... ......+ ..+|+++.|+|+...... ...+..+. .+.|+++|.||+|+....
T Consensus 49 ~~~l~i~Dt~G~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~v~D~~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 124 (165)
T 2wji_A 49 GEKFKVVDLPGVYS-LTANSIDE--IIARDYIINEKPDLVVNIVDATALERN-LYLTLQLMEMGANLLLALNKMDLAKSL 124 (165)
T ss_dssp TEEEEEEECCCCSC-SSSSSHHH--HHHHHHHHHHCCSEEEEEEETTCHHHH-HHHHHHHHHTTCCEEEEEECHHHHHHT
T ss_pred CcEEEEEECCCccc-CCCcchhH--HHHHHHHhcCCCCEEEEEecCCchhHh-HHHHHHHHhcCCCEEEEEEchHhcccc
Confidence 45688999865432 11211111 1112333 479999999998753110 01111222 378999999999985432
Q ss_pred H----HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 164 D----RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 164 ~----~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
. .+.| .+..+..++++||++|.|++++.+.+.+
T Consensus 125 ~~~~~~~~~---~~~~~~~~~~~SA~~~~~v~~l~~~l~~ 161 (165)
T 2wji_A 125 GIEIDVDKL---EKILGVKVVPLSAAKKMGIEELKKAISI 161 (165)
T ss_dssp TCCCCHHHH---HHHHTSCEEECBGGGTBSHHHHHHHHHH
T ss_pred ChhhHHHHH---HHHhCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 1 2233 2345678999999999999988776543
No 309
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.75 E-value=7.4e-06 Score=75.72 Aligned_cols=112 Identities=13% Similarity=0.024 Sum_probs=68.6
Q ss_pred cCCcEEEEcCCCCCcCCCch-HHHHHHHHH-HHHh--hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPG-HIAKTEKEL-KDQL--KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PG-h~~~~~k~l-~~~i--~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL 159 (377)
.+..+.+||......- .+. ......+.+ ...+ .++|+|+.|+|+..+ ..+..+...+. +.|+++|+||+|+
T Consensus 46 ~~~~~~lvDtpG~~~~-~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl 122 (256)
T 3iby_A 46 GEHLIEITDLPGVYSL-VANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDI 122 (256)
T ss_dssp TTEEEEEEECCCCSSC-C------CHHHHHHHHHHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHH
T ss_pred CCeEEEEEeCCCcccc-cccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhc
Confidence 3447789997654221 010 000122223 2445 889999999999863 22223333333 6899999999998
Q ss_pred CCHHHHHH-HHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 160 ISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
........ ........|.+++++|+++|.|+++|.+.+.++
T Consensus 123 ~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 123 AEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 75432111 112223457899999999999999887776543
No 310
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.75 E-value=6.3e-06 Score=82.02 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=34.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCc-e-----------------------------eccCCCCceeEEEEEEe---CCc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRM-C-----------------------------PAAPRPGVTRVLKWVRF---GKD 263 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~-~-----------------------------~v~~~pgtT~~~~~~~~---~~~ 263 (377)
.++|+++|.+|+|||||+|+|+.... . ..+..+|+|.+.....+ +..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 46899999999999999999985310 0 01125788888654433 456
Q ss_pred eEEEcCCccc
Q 017100 264 LEFLDSPGII 273 (377)
Q Consensus 264 ~~l~DTPG~i 273 (377)
+.++||||..
T Consensus 86 ~~iiDtpG~~ 95 (435)
T 1jny_A 86 FTIIDAPGHR 95 (435)
T ss_dssp EEECCCSSST
T ss_pred EEEEECCCcH
Confidence 8999999974
No 311
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.75 E-value=1.3e-05 Score=78.95 Aligned_cols=41 Identities=29% Similarity=0.346 Sum_probs=27.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc--eeccCCCCceeEEE
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK 256 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~--~~v~~~pgtT~~~~ 256 (377)
..++|+++|.+|+|||||+|+|++... ...+..+|+|.+..
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 49 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLG 49 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEec
Confidence 357899999999999999999996432 22334578887643
No 312
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.75 E-value=7.6e-06 Score=80.60 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.7
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..++|+++|.+|+|||||+|+|++.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc
Confidence 4578999999999999999999974
No 313
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.75 E-value=5.3e-05 Score=74.51 Aligned_cols=95 Identities=17% Similarity=0.044 Sum_probs=62.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCC-
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS- 161 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~- 161 (377)
.+..+.+||. ||| +.+.+.+...+..+|++++|+|+.++......+....+ .+.| +++++||+|+.+
T Consensus 73 ~~~~~~iiDt--------pG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 73 AKRHYSHVDC--------PGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp SSCEEEEEEC--------CCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC
T ss_pred CCeEEEEEEC--------CCh-HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCc
Confidence 3456777775 454 34566677788999999999999886543322222222 2567 789999999984
Q ss_pred HHHH----HHHHHHHHHcC-----CeEEEeeCccCCC
Q 017100 162 MADR----NAWATYFAKQG-----TKVIFSNGQLGMG 189 (377)
Q Consensus 162 ~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~g 189 (377)
.+.. .+..+++...+ .+++++|+++|.|
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 3221 23334455544 5789999999876
No 314
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.74 E-value=1.3e-05 Score=77.51 Aligned_cols=23 Identities=52% Similarity=0.713 Sum_probs=20.9
Q ss_pred CceeeeEeecCCCCcchhhhhhh
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLL 238 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~ 238 (377)
...+|+++|.||||||||+|+|.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999996
No 315
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.74 E-value=2.5e-06 Score=76.43 Aligned_cols=104 Identities=10% Similarity=-0.037 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~~ 161 (377)
..+.+||..... +........+..+|++++|+|+.++.+..+.. +..+. .+.|+++|+||+|+.+
T Consensus 62 ~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 62 IKAQIWDTAGQE---------RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEECCTTTT---------TTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred EEEEEEECCCcc---------chhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 567888865432 12222335678999999999998764432211 11111 2678999999999965
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 162 ~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
... ......+....+..++.+|+++|.|++++.+.+.+.
T Consensus 133 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT 173 (223)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 321 122334445667889999999999999887766543
No 316
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.71 E-value=1.2e-05 Score=76.08 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~------~l~~~l~~k~~ilVlNK~DL~~ 161 (377)
..+.+||.... .+........+..+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+.+
T Consensus 203 ~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 203 VNLGLWDTAGL---------EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp EEEEEEEECCC---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred EEEEEEeCCCc---------hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 34457775443 22223334568899999999999876543321 1222223789999999999965
Q ss_pred HHH--------------HHHHHHHHHHcCC-eEEEeeCccCCCchhhhhHHHH
Q 017100 162 MAD--------------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 162 ~~~--------------~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
... .....++....+. .++.+|+++|.|++++.+.+.+
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326 (332)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHH
Confidence 321 1222333445565 8999999999999988776554
No 317
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.69 E-value=7.4e-05 Score=76.15 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=47.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~ 162 (377)
+..+.+||+ ||| ..+.......+..+|.+++|+|+..+.......+...+ .+.|+++|+||+|+...
T Consensus 81 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 81 DYLINLLDT--------PGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TEEEEEECC--------CCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CEEEEEEEC--------CCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 456777886 343 33445566789999999999999987655444333333 37899999999999743
No 318
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.69 E-value=3.8e-05 Score=70.96 Aligned_cols=110 Identities=20% Similarity=0.112 Sum_probs=68.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHh--hhcCeEEEEEecCCCCCCCcHHH-HHHh-cCCCeEEEEEccCCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMIS 161 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i--~~aDlIL~V~Dar~p~~~~~~~l-~~~l-~~k~~ilVlNK~DL~~ 161 (377)
.+..+.+||......- .+-+.. +......+ ..+|+++.|+|+..... ...+ .++. .+.|+++|+||+|+..
T Consensus 50 ~~~~~~l~DtpG~~~~-~~~~~~--e~v~~~~~~~~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSL-GYSSID--EKIARDYLLKGDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp TTEEEEEEECCCCSSC-CSSSHH--HHHHHHHHHHSCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred CCeEEEEEECCCcCcc-CCCCHH--HHHHHHHHhhcCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 4567889997654211 010111 11112333 68999999999986422 2222 2222 2789999999999864
Q ss_pred HHHHHH-HHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 162 MADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 162 ~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
...... .....+..|.+++++|+++|.|+++|.+.+.+.
T Consensus 125 ~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 125 KTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp HTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHH
Confidence 432111 122334568899999999999999988776654
No 319
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.68 E-value=1.9e-05 Score=73.55 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=33.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCceecc-------CCCCceeE--E----EEEEeCCceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV--L----KWVRFGKDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~~v~-------~~pgtT~~--~----~~~~~~~~~~l~DTPG~i~ 274 (377)
+++++||.+|+|||||||.|+|......+ +.+.+++. + |...+...+.+.|||||-.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence 57999999999999999999975433222 22222221 1 1112234678999999964
No 320
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.68 E-value=0.00015 Score=79.62 Aligned_cols=95 Identities=18% Similarity=0.108 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHH-H----HHHHHHHHHc
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMAD-R----NAWATYFAKQ 175 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~-~----~~~~~~~~~~ 175 (377)
||| +.+.+.+...+..+|++|+|+|+.++......+....+ .+.| +++++||+|+.+..+ . .+..+++...
T Consensus 367 PGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~ 445 (1289)
T 3avx_A 367 PGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY 445 (1289)
T ss_dssp CCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhc
Confidence 787 55667777778999999999999987654433322222 2677 689999999985322 1 2333445555
Q ss_pred C-----CeEEEeeCccC--------CCchhhhhHHHH
Q 017100 176 G-----TKVIFSNGQLG--------MGTMKLSRLAKA 199 (377)
Q Consensus 176 g-----~~vi~iSa~~g--------~gi~~L~~~l~~ 199 (377)
+ .+++++|+++| .|+..|.+.+.+
T Consensus 446 G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 446 DFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 4 47899999998 356666665554
No 321
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.68 E-value=4.5e-05 Score=78.83 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=68.5
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH-hcCCCeEEEEEccCCCCHHHH
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW-LGNRKRILVLNREDMISMADR 165 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~-l~~k~~ilVlNK~DL~~~~~~ 165 (377)
..+.+||+ ||| ..+..++...+..+|.+++|+|+.++....... +... ..+.|+++++||+|+.....
T Consensus 73 ~~inliDT--------PGh-~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~- 142 (600)
T 2ywe_A 73 YKLHLIDT--------PGH-VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADV- 142 (600)
T ss_dssp EEEEEECC--------CCS-GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-
T ss_pred EEEEEEEC--------CCc-HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCH-
Confidence 34556664 565 345556677789999999999998875433222 1111 24789999999999975321
Q ss_pred HHHHHHHHH-cCC---eEEEeeCccCCCchhhhhHHHHhh
Q 017100 166 NAWATYFAK-QGT---KVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 166 ~~~~~~~~~-~g~---~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
....+.+.+ .+. .++++||++|.|+.+|.+.+.+..
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 122222322 343 489999999999998877665443
No 322
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.67 E-value=6.8e-05 Score=74.55 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHHH------hcCCCeEEEEEc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQW------LGNRKRILVLNR 156 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~----~~~~l~~~------l~~k~~ilVlNK 156 (377)
+..+.+||+ ||| +.+.+.+...+..+|.+++|+|+.+.... ...+..+. +...++++++||
T Consensus 83 ~~~~~iiDt--------pG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 83 KYFFTIIDA--------PGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp SCEEEECCC--------SSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred CeEEEEEEC--------CCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence 455677775 554 44566677788999999999999874110 11122221 223468999999
Q ss_pred cCCCC----HHH----HHHHHHHHHHcC-----CeEEEeeCccCCCchhh
Q 017100 157 EDMIS----MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 157 ~DL~~----~~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (377)
+|+.+ ++. ..+..+++...+ ..++++|+++|.|+.++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 99987 221 233444555555 56899999999998744
No 323
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.66 E-value=8.3e-06 Score=70.50 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=65.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~------~l~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||..... .........+..+|++++|+|+.++.+..+. .+.....+.|+++|.||+|+
T Consensus 53 ~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 123 (184)
T 1m7b_A 53 QRIELSLWDTSGSP---------YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123 (184)
T ss_dssp CEEEEEEEEECCSG---------GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEEEECCCCh---------hhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchh
Confidence 34567888865432 1122223457899999999999875443221 12222247899999999999
Q ss_pred CCHHH--------------HHHHHHHHHHcC-CeEEEeeCc-cCCCchhhhhHHHH
Q 017100 160 ISMAD--------------RNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~--------------~~~~~~~~~~~g-~~vi~iSa~-~g~gi~~L~~~l~~ 199 (377)
.+... .+...++.++.+ ..++.+|++ ++.|++++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 179 (184)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred hcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHH
Confidence 74210 112223334445 688999998 68888887766543
No 324
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.65 E-value=8.6e-06 Score=72.26 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=65.6
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM 159 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~------~l~~~l~~k~~ilVlNK~DL 159 (377)
....+.+||..... +........+..+|++++|+|+.++.+..+. .+.+...+.|+++|.||+|+
T Consensus 74 ~~~~l~i~Dt~G~~---------~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 74 QRIELSLWDTSGSP---------YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp SEEEEEEEEECCSG---------GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEEEeCCCcH---------hhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhh
Confidence 34567889865542 1112223457899999999999875443221 12222236899999999999
Q ss_pred CCHHH--------------HHHHHHHHHHcC-CeEEEeeCc-cCCCchhhhhHHHH
Q 017100 160 ISMAD--------------RNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~--------------~~~~~~~~~~~g-~~vi~iSa~-~g~gi~~L~~~l~~ 199 (377)
.+... .+...++.++.+ ..++.+||+ ++.|++++.+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHH
Confidence 74210 112223334445 688999998 68888888766544
No 325
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.64 E-value=9.3e-05 Score=74.28 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCC--------CCcHHHHHH-hcCCC-eEEEEEccCCCC----HHH----H
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--------TTHPLMDQW-LGNRK-RILVLNREDMIS----MAD----R 165 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~--------~~~~~l~~~-l~~k~-~ilVlNK~DL~~----~~~----~ 165 (377)
||| +.+.+.+...+..+|++|+|+|++++.. .....+... ..+.| +++++||+|+.+ ++. .
T Consensus 129 PGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~ 207 (467)
T 1r5b_A 129 PGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECV 207 (467)
T ss_dssp CC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHH
T ss_pred CCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHH
Confidence 777 5566777777899999999999987631 111112211 23566 899999999964 221 1
Q ss_pred HHHHHHHHHc-C------CeEEEeeCccCCCchhh
Q 017100 166 NAWATYFAKQ-G------TKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 166 ~~~~~~~~~~-g------~~vi~iSa~~g~gi~~L 193 (377)
.+..+++.+. | ..++++|+++|.|+.++
T Consensus 208 ~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 208 DKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp HHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred HHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 2334445454 3 45889999999998764
No 326
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.63 E-value=7.7e-06 Score=76.27 Aligned_cols=113 Identities=16% Similarity=0.023 Sum_probs=66.9
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHH-H--HhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELK-D--QLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~-~--~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 160 (377)
.+..+.+||......-..-+......+.+. . ..+.+|+++.|+|+.... .+..+...+ .+.|+++|+||+|+.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccch
Confidence 345678888765422110000011122222 2 247999999999998632 222222222 278999999999986
Q ss_pred CHHHHHH-HHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 161 SMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 161 ~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
+...... ...+.+..|.+++++|+++|.|+++|.+.+.+.
T Consensus 126 ~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 126 EKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp HHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5432111 112223457899999999999999887766543
No 327
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.62 E-value=0.00011 Score=71.47 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCe-EEEEE-ccCCCCH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKR-ILVLN-REDMISM 162 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~-ilVlN-K~DL~~~ 162 (377)
+..+.+||+ ||| +++.+.+...+..+|++++|+| .........+...++ .+.|. ++++| |+|+ +.
T Consensus 59 ~~~i~iiDt--------PGh-~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~ 127 (370)
T 2elf_A 59 GRNMVFVDA--------HSY-PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM 127 (370)
T ss_dssp SSEEEEEEC--------TTT-TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH
T ss_pred CeEEEEEEC--------CCh-HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH
Confidence 344667775 555 4455666677899999999999 543322111221111 35677 99999 9999 65
Q ss_pred HHHH----HHHHHHHHcC---CeEEE--eeCcc---CCCchhhhhHHHHhhh
Q 017100 163 ADRN----AWATYFAKQG---TKVIF--SNGQL---GMGTMKLSRLAKALAS 202 (377)
Q Consensus 163 ~~~~----~~~~~~~~~g---~~vi~--iSa~~---g~gi~~L~~~l~~l~~ 202 (377)
+... +..+++.+.+ .++++ +||++ +.|+++|.+.+.++.+
T Consensus 128 ~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 128 HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 4332 2223333322 57899 99999 9999998877765543
No 328
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.62 E-value=4.1e-05 Score=75.78 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=38.2
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCce---eccCCCCceeEEEEEEe-C----CceEEEcCCcccc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRF-G----KDLEFLDSPGIIP 274 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~---~v~~~pgtT~~~~~~~~-~----~~~~l~DTPG~i~ 274 (377)
++++|||.+|+|||||||.|.|.... .....++.|+....+-. . ..+.++||||+-.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 45999999999999999999986311 11224566665322221 1 2578999999964
No 329
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.62 E-value=3.4e-05 Score=78.74 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=65.4
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH----HhcCCCeEEEEEccCCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ----WLGNRKRILVLNREDMIS 161 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~----~l~~k~~ilVlNK~DL~~ 161 (377)
.+..+.+||......- .......+..+|+++.|+|+... .....+.. ...+.|+++|+||+|+.+
T Consensus 96 ~~~~~~i~Dt~G~e~~---------~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIM---------HASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp TTCEEEEECCCSCCTT---------TTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred ceEEEEEEECCcHHHH---------HHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 3567888987663211 11222457789999999999754 11112222 223589999999999976
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 162 ~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
... .....+.+...+..++.+||++|.|+++|.+.+.+..
T Consensus 165 ~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 165 SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp TCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 432 3344445556677899999999999999887766543
No 330
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.61 E-value=4.8e-05 Score=78.90 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-------CCCcHHHHHH---hcCCCeEEEEEc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQW---LGNRKRILVLNR 156 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~-------~~~~~~l~~~---l~~k~~ilVlNK 156 (377)
+..+.+||+ ||| +.+.+.+...+..+|++|+|+|+..+. .....+...+ +..+++++|+||
T Consensus 244 ~~~~~iiDT--------PG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNK 314 (611)
T 3izq_1 244 RANFTIVDA--------PGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 314 (611)
T ss_dssp SCEEEEEEC--------CSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred CceEEEEEC--------CCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEec
Confidence 446677775 454 445666667789999999999998631 1111111111 223458999999
Q ss_pred cCCCC--HHH----HHHHHHHHHHcC-----CeEEEeeCccCCCchhh
Q 017100 157 EDMIS--MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 157 ~DL~~--~~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (377)
+|+.+ ... ......++.+.| ..++++||++|.|+.++
T Consensus 315 iDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 315 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99987 221 222333444444 47899999999999865
No 331
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.61 E-value=1.9e-05 Score=80.49 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=35.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce---------------ecc------CCCCceeEEEEEE---eCCceEEEcCCcc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAA------PRPGVTRVLKWVR---FGKDLEFLDSPGI 272 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~---------------~v~------~~pgtT~~~~~~~---~~~~~~l~DTPG~ 272 (377)
..+|+++|.+|+|||||+|+|+..... .+. ...|+|.+..... -+..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 357999999999999999999853211 111 1345554422222 2456899999998
Q ss_pred cc
Q 017100 273 IP 274 (377)
Q Consensus 273 i~ 274 (377)
..
T Consensus 93 ~d 94 (529)
T 2h5e_A 93 ED 94 (529)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 332
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.59 E-value=1.4e-05 Score=80.31 Aligned_cols=57 Identities=25% Similarity=0.225 Sum_probs=32.0
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce------------------------ec------cCCCCceeEEEEEE--e-CCc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC------------------------PA------APRPGVTRVLKWVR--F-GKD 263 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~------------------------~v------~~~pgtT~~~~~~~--~-~~~ 263 (377)
.++|+++|.+|+|||||+|+|+..... .+ +...|+|.+..... . +..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 578999999999999999999742110 01 11357787764322 2 346
Q ss_pred eEEEcCCccc
Q 017100 264 LEFLDSPGII 273 (377)
Q Consensus 264 ~~l~DTPG~i 273 (377)
+.++||||..
T Consensus 123 ~~iiDtPGh~ 132 (467)
T 1r5b_A 123 FSLLDAPGHK 132 (467)
T ss_dssp EEECCCCC--
T ss_pred EEEEECCCcH
Confidence 8899999974
No 333
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.59 E-value=5.1e-05 Score=68.24 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=33.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCceeccCCCCceeE--EEEEEeCC---ceEEEcCCccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~l~DTPG~i 273 (377)
.++|++||-+|||||||+|++.... ......|.+..+ ...+..+. .+.|.||+|--
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 4689999999999999999998543 222222322222 22333332 35689999963
No 334
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.59 E-value=2.3e-05 Score=67.80 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-------hcCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-------l~~k~~ilVlNK~DL 159 (377)
...+.+||.... ++........+..+|+++.|+|..++..+.+ .+..+ ..+.|+++|.||+|+
T Consensus 55 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~-~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (184)
T 2zej_A 55 DLVLNVWDFAGR---------EEFYSTHPHFMTQRALYLAVYDLSKGQAEVD-AMKPWLFNIKARASSSPVILVGTHLDV 124 (184)
T ss_dssp -CEEEEEEECSH---------HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHH-THHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred ceEEEEEecCCC---------HHHHHhhHHHccCCcEEEEEEeCCcchhHHH-HHHHHHHHHHhhCCCCcEEEEEECCCc
Confidence 456677775432 3344333466888999999999877532211 12222 136789999999999
Q ss_pred CCHHHHH----HHHHHH-HHcCCe----EEEeeCccCC-CchhhhhHHHHh
Q 017100 160 ISMADRN----AWATYF-AKQGTK----VIFSNGQLGM-GTMKLSRLAKAL 200 (377)
Q Consensus 160 ~~~~~~~----~~~~~~-~~~g~~----vi~iSa~~g~-gi~~L~~~l~~l 200 (377)
.+..... ...+.+ ...+.. ++++||+++. |+.+|.+.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 125 SDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175 (184)
T ss_dssp CCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHH
Confidence 8765432 112222 223444 7889999996 888776665443
No 335
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.59 E-value=0.0001 Score=69.66 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=61.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHH-HHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHH---hcCCCeEEEEEcc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKT-EKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQW---LGNRKRILVLNRE 157 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~-~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~---l~~k~~ilVlNK~ 157 (377)
+..+.+||......- +... .......+..+|+++.|+|+.++.+..+.. +..+ ..+.|+++|+||+
T Consensus 51 ~~~l~i~Dt~G~~~~-----~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~ 125 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF-----MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKM 125 (307)
T ss_dssp TEEEEEEEECCSHHH-----HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred ceEEEEEECCCcHHH-----hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence 456788886543110 1112 233346689999999999998875544321 1121 1278999999999
Q ss_pred CCCCHHHHH--------HHHHHHHHcC---CeEEEeeCccCCCchh
Q 017100 158 DMISMADRN--------AWATYFAKQG---TKVIFSNGQLGMGTMK 192 (377)
Q Consensus 158 DL~~~~~~~--------~~~~~~~~~g---~~vi~iSa~~g~gi~~ 192 (377)
|+.+.+... ...++....| ..++.+|+++ .++.+
T Consensus 126 Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e 170 (307)
T 3r7w_A 126 DLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYK 170 (307)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHH
Confidence 999843322 2223344455 6888999998 44433
No 336
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.57 E-value=1.4e-05 Score=82.69 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=37.1
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCceeccCCC-CceeEE--EEEEe-------------------CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL--KWVRF-------------------GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~p-gtT~~~--~~~~~-------------------~~~~~l~DTPG~i 273 (377)
+.++|+++|.+|+|||||+|+|++... ....+ |+|.+. ..... ...+.++||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 356899999999999999999996432 22333 555542 22211 0148999999985
Q ss_pred c
Q 017100 274 P 274 (377)
Q Consensus 274 ~ 274 (377)
.
T Consensus 82 ~ 82 (594)
T 1g7s_A 82 A 82 (594)
T ss_dssp C
T ss_pred H
Confidence 3
No 337
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.56 E-value=8.5e-06 Score=72.60 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=26.8
Q ss_pred ceeeeEeecCCCCcchhhhhhhcC-----CceeccCCCCce
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVT 252 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~-----~~~~v~~~pgtT 252 (377)
...|+++|++|||||||+|+|++. +...+...+++|
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK 70 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc
Confidence 457999999999999999999854 233444555544
No 338
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.53 E-value=0.0001 Score=77.52 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=34.7
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce-----e------ccC------CCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----P------AAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~-----~------v~~------~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
..+|+++|.+|+|||||+|+|+..... . +.+ ..|+|.......+ +..+.|+||||...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 468999999999999999999832110 1 111 3466655433222 45689999999864
No 339
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.52 E-value=0.00018 Score=69.79 Aligned_cols=114 Identities=14% Similarity=0.008 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH---HHH---h--cCCCeEEEEEccCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM---DQW---L--GNRKRILVLNREDM 159 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l---~~~---l--~~k~~ilVlNK~DL 159 (377)
..+.+||+...-.+ .|.++....+.+.+.+..+|++++|+|+..+......++ ... + .++|+++|.||+|+
T Consensus 226 ~~v~l~DT~G~i~~-lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl 304 (364)
T 2qtf_A 226 RKIMLVDTVGFIRG-IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK 304 (364)
T ss_dssp EEEEEEECCCBCSS-CCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG
T ss_pred EEEEEEeCCCchhc-CCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC
Confidence 34566666443111 122222223445556899999999999877641111111 112 2 36899999999999
Q ss_pred CCHHHHH--HHH-HHHHHc-C--CeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 160 ISMADRN--AWA-TYFAKQ-G--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 160 ~~~~~~~--~~~-~~~~~~-g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
.+..... ... .+.+.. . ..++++|++++.|++.|.+.+.++..
T Consensus 305 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 305 INGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp CCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 8643211 111 112333 2 36789999999999999888876544
No 340
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.52 E-value=2.9e-05 Score=77.04 Aligned_cols=109 Identities=10% Similarity=0.015 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHH
Q 017100 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN 166 (377)
Q Consensus 89 d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~ 166 (377)
.+.+||+..... |........+.....+..+|++++|+|+ ........+..++ .+.|+++|+||+|+.+....+
T Consensus 84 ~l~liDTpG~~d--~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~ 159 (423)
T 3qq5_A 84 PVTLVDTPGLDD--VGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEE 159 (423)
T ss_dssp EEEEEECSSTTC--CCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTH
T ss_pred eEEEEECcCCCc--ccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHH
Confidence 577888754321 1100001123456678999999999998 2222222233332 278999999999998655432
Q ss_pred HHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 167 AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 167 ~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
...++....+..++++|+++|.|++++.+.+.+..
T Consensus 160 ~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 160 LKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp HHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 21122223467889999999999999988776654
No 341
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=0.00011 Score=65.65 Aligned_cols=106 Identities=13% Similarity=0.002 Sum_probs=64.4
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcH-HH-HHHh-----cCCCeEEEEEc
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLNR 156 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~-~~i~~aDlIL~V~Dar~p~~~~~~-~l-~~~l-----~~k~~ilVlNK 156 (377)
.....+++||......+ .+.+. .....+|.++.|+|..++.+..+. .+ ..+. .+.|+++|.||
T Consensus 84 ~~~~~l~~~Dt~g~~~~---------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK 154 (211)
T 2g3y_A 84 GESATIILLDMWENKGE---------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154 (211)
T ss_dssp TEEEEEEEECCTTTTHH---------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEEC
T ss_pred CeeeEEEEeecCCCcch---------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 34455678886433111 12233 335678999999998765433221 11 1121 25799999999
Q ss_pred cCCCCHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 157 ~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+||..... ......+....+..++++||++|.|++++.+.+.+
T Consensus 155 ~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~ 199 (211)
T 2g3y_A 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199 (211)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred hHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99964321 11112223345678999999999999988766544
No 342
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.51 E-value=1.4e-06 Score=76.46 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=56.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh----c----CCCeEEEEEccCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G----NRKRILVLNREDM 159 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l----~----~k~~ilVlNK~DL 159 (377)
..+.+||...... ........++.+|++++|+|+.++.+... +..++ . +.|+++|+||+|+
T Consensus 82 ~~~~i~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 82 IKLQIWDTAGQER---------FRTITSSYYRGAHGIIVVYDVTDQESFNN--VKQWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp EEEEEECCTTCTT---------CCCCSCC--CCCSEEEECC-CCCSHHHHH--HHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred EEEEEEECCCcHh---------HHHHHHHHhhcCCEEEEEEECCCHHHHHH--HHHHHHHHHHhccCCCCEEEEEECccC
Confidence 4677888655321 11222346789999999999987543222 22222 1 5789999999999
Q ss_pred CCHHHH--HHHHHHHHHcCCeEEEeeCccCCCchhhhhHHH
Q 017100 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (377)
Q Consensus 160 ~~~~~~--~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (377)
.+.... .....+....+..++++|+++|.|++++.+.+.
T Consensus 151 ~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp C--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred CccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 755321 111223445577889999999999888766554
No 343
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.50 E-value=0.00034 Score=63.77 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-H----HH--HhcCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQ--WLGNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l----~~--~l~~k~~ilVlNK~DL 159 (377)
+.|+++||+...-. +..+....+.+.+.+.. ++++.++|+.......+.. . .. ...+.|.++|+||+|+
T Consensus 108 ~~d~iiiDtpG~~~---~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 108 ENDYVLIDTPGQME---TFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183 (262)
T ss_dssp HCSEEEEECCSSHH---HHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred cCCEEEEeCCCccc---hhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccc
Confidence 46999999865411 00011113334445566 8999999987543322211 0 01 1126899999999999
Q ss_pred CCHHHHH---HHHH-------H------------------HHHcC--CeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 160 ISMADRN---AWAT-------Y------------------FAKQG--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 160 ~~~~~~~---~~~~-------~------------------~~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
.+..+.. ++.+ . ..+.+ ..++++|+++|.|+++|.+.+.+...
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 8765322 2211 1 12223 37899999999999999887766543
No 344
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.49 E-value=3.1e-05 Score=69.17 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..+|+++|.+|||||||+|+|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999853
No 345
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.46 E-value=9e-05 Score=73.17 Aligned_cols=57 Identities=26% Similarity=0.243 Sum_probs=36.2
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCc-----eeccCCCCceeEEEEEEe--CCceEEEcCCccccC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~-----~~v~~~pgtT~~~~~~~~--~~~~~l~DTPG~i~~ 275 (377)
..++|+|.+|||||||||+|.|... +.++. .-+|+....... ..++.+.|+||+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecceeEEeccccccCCeeehHhhcccch
Confidence 4699999999999999999998322 11221 123433222222 246899999999643
No 346
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.46 E-value=4.9e-05 Score=70.43 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=67.4
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHh--hhcCeEEEEEecCCCCCCCcHHH-HHHh-cC-CCeEEEEEccCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLM-DQWL-GN-RKRILVLNREDMI 160 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i--~~aDlIL~V~Dar~p~~~~~~~l-~~~l-~~-k~~ilVlNK~DL~ 160 (377)
.+..+.+||......- .+..... ......+ .++|+++.|+|+.... .+..+ .++. .+ .|+++|+||+|+.
T Consensus 48 ~~~~~~l~DtpG~~~~-~~~~~~~--~~~~~~~~~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 48 REKEFLVVDLPGIYSL-TAHSIDE--LIARNFILDGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp TTEEEEEEECCCCSCC-CSSCHHH--HHHHHHHHTTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred CCceEEEEeCCCcccc-ccCCHHH--HHHHHhhhccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 3445788987654211 1111111 1122333 7899999999998642 12111 1222 24 8999999999986
Q ss_pred CHHHHHH-HHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 161 SMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 161 ~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
+...... .....+..|.+++++|+++|.|+.++.+.+.+..
T Consensus 123 ~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 123 KKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp HHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5432111 1122345578999999999999999887776553
No 347
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.45 E-value=8.2e-05 Score=69.33 Aligned_cols=106 Identities=17% Similarity=0.099 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHh--hhcCeEEEEEecCCCCCCCcHHHH-HHh-cCCCeEEEEEccCCCCH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISM 162 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i--~~aDlIL~V~Dar~p~~~~~~~l~-~~l-~~k~~ilVlNK~DL~~~ 162 (377)
+..+.+||......- .+.... +......+ ..+|+++.|+|+.... .+..+. ++. .+.|+++|+||+|+...
T Consensus 48 ~~~l~l~DtpG~~~~-~~~~~~--e~v~~~~~~~~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~ 122 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSM-SPYSPE--AKVARDYLLSQRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDG 122 (272)
T ss_dssp CTTEEEEECCCCSCS-SCSSHH--HHHHHHHHHTTCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHH
T ss_pred CCeEEEEECCCcCcc-CCCChH--HHHHHHHHhcCCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCc
Confidence 678899997654211 111111 11222344 3699999999987632 112221 222 37899999999998643
Q ss_pred H----HHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 163 A----DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 163 ~----~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
. ....+ .+..|.+++++||++|.|++++.+.+.+.
T Consensus 123 ~~~~~~~~~l---~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 123 QGKKINVDKL---SYHLGVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp TTCCCCHHHH---HHHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred CCcHHHHHHH---HHHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 2 12233 23457889999999999999987776543
No 348
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.44 E-value=5.3e-05 Score=71.65 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.5
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..++|+++|.+|||||||+|+|.+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999875
No 349
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.44 E-value=0.00052 Score=63.59 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=46.2
Q ss_pred cCeEEEEEecCC-CCCCCcHHHHHHhc-CCCeEEEEEccCCCCHHHHHHH----HHHHHHcCCeEEEeeCccCCCchhhh
Q 017100 121 MDVVIEVRDARI-PLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLS 194 (377)
Q Consensus 121 aDlIL~V~Dar~-p~~~~~~~l~~~l~-~k~~ilVlNK~DL~~~~~~~~~----~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (377)
+|+++++++... +....+.++.+.+. ++|+++|+||+|+.+..+.... .+.+...+..++.+|++++.|+.++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 778888885543 44444444444444 7899999999999987665433 34455667888889999999998887
Q ss_pred hHHHH
Q 017100 195 RLAKA 199 (377)
Q Consensus 195 ~~l~~ 199 (377)
+.+.+
T Consensus 196 ~~l~~ 200 (274)
T 3t5d_A 196 KKIKD 200 (274)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76654
No 350
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.43 E-value=0.0001 Score=73.73 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------CcHHHHHHh--cCCC-eEEEEEc
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPLMDQWL--GNRK-RILVLNR 156 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~-------~~~~l~~~l--~~k~-~ilVlNK 156 (377)
+..+.+||+ ||| +.+.+.+...+..+|++++|+|++++... ...+...+. .+.| +++|+||
T Consensus 84 ~~~~~iiDt--------PGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK 154 (458)
T 1f60_A 84 KYQVTVIDA--------PGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 154 (458)
T ss_dssp SEEEEEEEC--------CCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CceEEEEEC--------CCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 445777885 454 45566677778999999999999864211 111111111 2445 8899999
Q ss_pred cCCCC--HHHH----HHHHHHHHHcC-----CeEEEeeCccCCCchhh
Q 017100 157 EDMIS--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 157 ~DL~~--~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (377)
+|+.+ ++.. .+..+++...+ ..++++||++|.|+.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 99983 3321 23334445554 57999999999998654
No 351
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.40 E-value=5e-06 Score=84.83 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=73.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH--HHHHHHHH----HHc--CCeEEEeeCc
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYF----AKQ--GTKVIFSNGQ 185 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~--~~~~~~~~----~~~--g~~vi~iSa~ 185 (377)
..+..+|++++|+|+.++......+....+ .+.|+++++||+|+.+... .......+ ... ...++++||+
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 456889999999999986554333332222 3789999999999974321 11111111 011 1367889999
Q ss_pred cCCCchhhhhHHHHhhhhhhhhhccc------------CCCCCceeeeEeecCCCCcchhh
Q 017100 186 LGMGTMKLSRLAKALASDVNVKRRSK------------GLLPRAVRAGIVGYPNVGKSSLI 234 (377)
Q Consensus 186 ~g~gi~~L~~~l~~l~~~~~~~~~~~------------~~~~~~~~v~lvG~pNvGKSSLi 234 (377)
+|.|+++|.+.+..+........... ......+..+.|+..+++|++.+
T Consensus 151 tG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 151 TGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp SSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred CCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 99999999887766543221111000 00112456688888899998865
No 352
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.40 E-value=5.3e-05 Score=83.00 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=36.3
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc----e-----------eccCCCCceeEEEEEEe---CCceEEEcCCccc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM----C-----------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~----~-----------~v~~~pgtT~~~~~~~~---~~~~~l~DTPG~i 273 (377)
..++|+++|.+|+|||||+|+|++... . ..+...|+|.+...+.+ +..+.++||||..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 457999999999999999999986310 0 11234677776533333 3578999999974
No 353
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.39 E-value=0.00015 Score=67.52 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCcCCC---chHH-HHHHHHHHHHhhhcCeEE-EEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWY---PGHI-AKTEKELKDQLKLMDVVI-EVRDARIPLSTTHP-LMDQWLG--NRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~---PGh~-~~~~k~l~~~i~~aDlIL-~V~Dar~p~~~~~~-~l~~~l~--~k~~ilVlNK~D 158 (377)
..++.+||+........ +... ......+..++..++.++ .|+|+..+....+. .+.+.+. +.|.++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 36889999865421000 1111 244555667888888555 79999876555442 3444443 679999999999
Q ss_pred CCCHHH-HHHHHHH-HHHc--C-CeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMAD-RNAWATY-FAKQ--G-TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~-~~~~~~~-~~~~--g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.+... ...+.+. +... + ..++++|+++|.|++++.+.+.+
T Consensus 204 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 204 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp GSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred cCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 986543 1222110 0011 2 25677999999999988776654
No 354
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.38 E-value=9.7e-05 Score=63.54 Aligned_cols=111 Identities=16% Similarity=0.075 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHh--hhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMA 163 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i--~~aDlIL~V~Dar~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~ 163 (377)
+..+.+||......- .+..... ......+ ..+|+++.|+|+..... ....+..+. .+.|+++|.||+|+....
T Consensus 53 ~~~~~l~Dt~G~~~~-~~~~~~~--~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~ 128 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSL-TANSIDE--IIARDYIINEKPDLVVNIVDATALER-NLYLTLQLMEMGANLLLALNKMDLAKSL 128 (188)
T ss_dssp TEEEEEEECCCCSCC-SSSSHHH--HHHHHHHHHHCCSEEEEEEEGGGHHH-HHHHHHHHHTTTCCEEEEEECHHHHHHT
T ss_pred CcEEEEEECCCcCcc-ccccHHH--HHHHHHHhccCCCEEEEEecchhHHH-HHHHHHHHHhcCCCEEEEEEhhhccccc
Confidence 467888997654321 1111111 1112233 45999999999874210 001112222 268999999999986432
Q ss_pred HHH-HHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 164 DRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 164 ~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
... ...++....+..++++|++++.|+.++.+.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 129 GIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp TCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 111 11122334577899999999999998877765543
No 355
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.37 E-value=6.6e-05 Score=77.55 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=65.1
Q ss_pred cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH---
Q 017100 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--- 163 (377)
Q Consensus 89 d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--- 163 (377)
.+.+||+.. | ..+.......+..+|++++|+|+.++......+...++ .+.|+++++||+|+.+..
T Consensus 71 ~i~liDTPG--------h-e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~ 141 (594)
T 1g7s_A 71 GLFFIDTPG--------H-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH 141 (594)
T ss_dssp EEEEECCCT--------T-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC
T ss_pred CEEEEECCC--------c-HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc
Confidence 478888643 3 11111122346779999999999986433222222222 378999999999997421
Q ss_pred --------------H--------HHHHHHHHHHcC---------------CeEEEeeCccCCCchhhhhHHHHhhh
Q 017100 164 --------------D--------RNAWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (377)
Q Consensus 164 --------------~--------~~~~~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (377)
. .....+.+...+ .+++++||++|.|+.+|.+.+..+..
T Consensus 142 ~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 011222333332 26889999999999999887765543
No 356
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.37 E-value=5.7e-05 Score=74.76 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=23.6
Q ss_pred CceeeeEeecCCCCcchhhhhhhcCCc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~~~ 242 (377)
-.++|+|||.+|||||||+|+|++...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 457899999999999999999997643
No 357
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.34 E-value=0.00031 Score=69.38 Aligned_cols=87 Identities=25% Similarity=0.319 Sum_probs=62.0
Q ss_pred HHhhhcCeEEEEEecC-CCCCCCc---HHHHHH---hcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCC
Q 017100 116 DQLKLMDVVIEVRDAR-IPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar-~p~~~~~---~~l~~~---l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~ 188 (377)
+.++++|.+|+++|+. .+..... .++..+ +..+|.++|+||+|+........+.+.+...+..++++||+++.
T Consensus 231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 4578999999999985 2221111 112222 23689999999999988755555666666667889999999999
Q ss_pred CchhhhhHHHHhhh
Q 017100 189 GTMKLSRLAKALAS 202 (377)
Q Consensus 189 gi~~L~~~l~~l~~ 202 (377)
|+++|.+.+.++..
T Consensus 311 gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 311 GLPALKEALHALVR 324 (416)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99998877766543
No 358
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.34 E-value=0.00019 Score=75.60 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=38.9
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce-----------eccC------CCCceeEEEEEEe---C-------CceEEEcC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---G-------KDLEFLDS 269 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~-----------~v~~------~pgtT~~~~~~~~---~-------~~~~l~DT 269 (377)
..+|+++|.+|+|||||+++|+..... .+.+ ..|+|.......+ + ..+.|+||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 457999999999999999999742111 1111 3466665433222 2 46889999
Q ss_pred Ccccc
Q 017100 270 PGIIP 274 (377)
Q Consensus 270 PG~i~ 274 (377)
||...
T Consensus 90 PG~~d 94 (704)
T 2rdo_7 90 PGHVD 94 (704)
T ss_pred CCccc
Confidence 99864
No 359
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.29 E-value=8.6e-05 Score=76.73 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=29.5
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCcee--------c------cCCCCceeEEEEEEe------C--CceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------A------APRPGVTRVLKWVRF------G--KDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~--------v------~~~pgtT~~~~~~~~------~--~~~~l~DTPG~i~ 274 (377)
..+|+++|.+|+|||||+|+|+...... + +...|.|...+...+ + ..+.|+||||...
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3479999999999999999998532111 1 113466765433222 1 2477999999864
No 360
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.27 E-value=0.00011 Score=74.37 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=24.1
Q ss_pred CceeeeEeecCCCCcchhhhhhh------cCCceecc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLL------KRRMCPAA 246 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~------~~~~~~v~ 246 (377)
.+..|+++|.|||||||++|.|. +++.+.++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35679999999999999999998 65554443
No 361
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.27 E-value=0.00045 Score=66.29 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=63.3
Q ss_pred ccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH
Q 017100 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD 164 (377)
Q Consensus 85 ~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~ 164 (377)
..+.+++++|+..-. + .. ..+...+|+++.|+|+..+..... +.....+.|.++|+||+|+.+...
T Consensus 146 ~~~~~i~liDTpG~~-~-----~~------~~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~ 211 (341)
T 2p67_A 146 AAGYDVVIVETVGVG-Q-----SE------TEVARMVDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTN 211 (341)
T ss_dssp HTTCSEEEEEEECCT-T-----HH------HHHHTTCSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHH
T ss_pred ccCCCEEEEeCCCcc-c-----hH------HHHHHhCCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHH
Confidence 357899999975421 1 11 124689999999999865422111 111112468999999999987644
Q ss_pred HHHHHHHHH----Hc-------CCeEEEeeCccCCCchhhhhHHHHh
Q 017100 165 RNAWATYFA----KQ-------GTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 165 ~~~~~~~~~----~~-------g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
...+.+.++ .. ...++++|+++|.|++.|.+.+.+.
T Consensus 212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 433322222 21 3568899999999999988776653
No 362
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.26 E-value=4.1e-05 Score=70.41 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.7
Q ss_pred CceeeeEeecC---------CCCcchhhhhhhcC
Q 017100 216 RAVRAGIVGYP---------NVGKSSLINRLLKR 240 (377)
Q Consensus 216 ~~~~v~lvG~p---------NvGKSSLiN~L~~~ 240 (377)
..++|+++|.+ |||||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 45899999999 99999999999973
No 363
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.24 E-value=2.1e-05 Score=81.36 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCC-------CCCcHHHHHHh--cCCC-eEEEEEccCCCC--HHHH----HH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQWL--GNRK-RILVLNREDMIS--MADR----NA 167 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~-------~~~~~~l~~~l--~~k~-~ilVlNK~DL~~--~~~~----~~ 167 (377)
||| ..+.+.+...+..+|++|+|+|+..+. .....+...++ .+.| +++|+||+|+.+ .... ..
T Consensus 263 PGh-~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~e 341 (592)
T 3mca_A 263 PGH-RDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNI 341 (592)
T ss_dssp ESS-SEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHH
Confidence 666 233333444578899999999998753 22222222222 2454 888999999976 3322 22
Q ss_pred HHHHH-HHcCC-----eEEEeeCccCCCch
Q 017100 168 WATYF-AKQGT-----KVIFSNGQLGMGTM 191 (377)
Q Consensus 168 ~~~~~-~~~g~-----~vi~iSa~~g~gi~ 191 (377)
..+++ ...|. .++++||++|.|+.
T Consensus 342 l~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 342 VSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 33334 33443 68999999999997
No 364
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.23 E-value=0.0011 Score=63.74 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=62.7
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA 163 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~ 163 (377)
...+.+++++|+..-. + + . ..+.+.+|+++.|+|+..+... ..+...+...+.++|+||+|+.+..
T Consensus 163 ~~~~~~~iliDT~Gi~-~--~-~--------~~l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 163 EGAGYDIILIETVGVG-Q--S-E--------FAVADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp HHTTCSEEEEECCCC-----C-H--------HHHHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHH
T ss_pred ccCCCCEEEEECCCcc-h--h-h--------hhHHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCch
Confidence 3467899999986521 1 1 0 2346799999999998764321 1122223357889999999998653
Q ss_pred HHH----HHHHHHHH-------cCCeEEEeeCccCCCchhhhhHHHHh
Q 017100 164 DRN----AWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 164 ~~~----~~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
... .+...+.. .+.+++++|+++|.|++.|.+.+.++
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~ 276 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF 276 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 322 22211111 13578899999999999998877664
No 365
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.18 E-value=0.00029 Score=61.42 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=54.0
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCccC
Q 017100 117 QLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (377)
Q Consensus 117 ~i~~aDlIL~V~Dar~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g 187 (377)
.+..+|.++.|+|..++.+..+.. +.+.. .+.|+++|.||+|+..... ......+....+..++.+||++|
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 467789999999987654433211 11111 2579999999999964321 11111222345678899999999
Q ss_pred CCchhhhhHHHH
Q 017100 188 MGTMKLSRLAKA 199 (377)
Q Consensus 188 ~gi~~L~~~l~~ 199 (377)
.|++++.+.+.+
T Consensus 157 ~~v~~lf~~l~~ 168 (192)
T 2cjw_A 157 HNVKELFEGIVR 168 (192)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999988765543
No 366
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.17 E-value=0.00012 Score=78.71 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhcC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..+|+|+|.+|+|||||+|+|+..
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 367
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.17 E-value=8.1e-05 Score=76.88 Aligned_cols=58 Identities=29% Similarity=0.428 Sum_probs=32.2
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCcee--------c------cCCCCceeEEEEEEe------C--CceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------A------APRPGVTRVLKWVRF------G--KDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~~--------v------~~~pgtT~~~~~~~~------~--~~~~l~DTPG~i~ 274 (377)
..+|+++|.+|+|||||+|+|+...... + +...|.|...+...+ + ..+.|+||||...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 3579999999999999999997532111 0 112455654321111 1 2467999999974
No 368
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.13 E-value=5.9e-05 Score=68.93 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.6
Q ss_pred ceeeeEeecCCCCcchhhhhhh-----cCCceeccCCCC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRPG 250 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~-----~~~~~~v~~~pg 250 (377)
...+.++|.+|||||||+|.|. +.+.+.+..-|+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3568899999999999999998 666555554444
No 369
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.12 E-value=0.002 Score=60.41 Aligned_cols=113 Identities=8% Similarity=-0.022 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCcCC---Cc-hHHHHHHHHHHHHhhhcCeEEEEEec-CCCCCCCc-HHHHHHhc--CCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQW---YP-GHIAKTEKELKDQLKLMDVVIEVRDA-RIPLSTTH-PLMDQWLG--NRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw---~P-Gh~~~~~k~l~~~i~~aDlIL~V~Da-r~p~~~~~-~~l~~~l~--~k~~ilVlNK~D 158 (377)
+.++.+||+....... -| +..+.........+..+|++++|+|+ .......+ ..+.+.+. ++|.++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 4678899976542100 00 00123455666889999999999997 44444333 35666553 689999999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCeEEEe---eCcc---CCCchhhhhHHHHhh
Q 017100 159 MISMADRNAWATYFAK----QGTKVIFS---NGQL---GMGTMKLSRLAKALA 201 (377)
Q Consensus 159 L~~~~~~~~~~~~~~~----~g~~vi~i---Sa~~---g~gi~~L~~~l~~l~ 201 (377)
+.+... .+.+.++. .+..++.+ |+.. +.|+.++.+.+.++.
T Consensus 210 l~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 210 LMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp SSCSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred cCCcch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 986543 11222222 11334444 4444 566666666555443
No 370
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.10 E-value=4.8e-05 Score=67.57 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=39.5
Q ss_pred eeeEeecCCCCcchhhhhhhcCCc-eeccCCCCceeEEEEEEe-CCceEEEcCCcc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~-~~~~~l~DTPG~ 272 (377)
.++|+|.+|||||||+|.|.+... ......+.|||....-.+ +.++.++|+..|
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEM 76 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHh
Confidence 589999999999999999997543 345677888988654323 345666666665
No 371
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.04 E-value=0.00063 Score=71.59 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCCcCCCchHHH--HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHhc--CCCeEEEEEccCCCCH
Q 017100 88 ADLYYWTKSLRPVQWYPGHIA--KTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWLG--NRKRILVLNREDMISM 162 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~--~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~l~--~k~~ilVlNK~DL~~~ 162 (377)
.++.+||+. |... .....+...+..+|+||+|+|+..+.+..+.+ +...+. ++|+++|+||+|+...
T Consensus 174 ~~l~LiDTP--------Gl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSP--------GLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECC--------CHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCeEEEECC--------CCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 467888864 3322 12345557889999999999998776554433 223333 6789999999999754
Q ss_pred H--------HHHH----HH----HHHHH---------cCCeEEEeeCc--------------cCCCchhhhhHHHHh
Q 017100 163 A--------DRNA----WA----TYFAK---------QGTKVIFSNGQ--------------LGMGTMKLSRLAKAL 200 (377)
Q Consensus 163 ~--------~~~~----~~----~~~~~---------~g~~vi~iSa~--------------~g~gi~~L~~~l~~l 200 (377)
. .... .. ..+.. ....++++|++ ++.|+..|.+.+.+.
T Consensus 246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHH
T ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHH
Confidence 3 1111 11 11211 11368999999 899999887666543
No 372
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.98 E-value=0.0007 Score=71.57 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=70.3
Q ss_pred CcEEEEcCCCCCc---CCCchHH-HHHHHHHHHHh-hhcCeEEEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccCC
Q 017100 88 ADLYYWTKSLRPV---QWYPGHI-AKTEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDM 159 (377)
Q Consensus 88 ~d~vi~d~~L~~~---qw~PGh~-~~~~k~l~~~i-~~aDlIL~V~Dar~p~~~~~~-~l~~~l~--~k~~ilVlNK~DL 159 (377)
.+++++|...-.. .--|... ....+.+.+++ ..+|+||.|+|++.+....+. .+.+.+. ++|.++|+||+|+
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDl 229 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 229 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTS
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCccc
Confidence 4567777653211 0012111 23444555555 688999999999987776665 4666554 6899999999999
Q ss_pred CCHHHH-HHHHHH-HH--HcC-CeEEEeeCccCCCchhhhhHHHH
Q 017100 160 ISMADR-NAWATY-FA--KQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 160 ~~~~~~-~~~~~~-~~--~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+++... ...... +. ..+ ..++++|+++|.|++.|.+.+.+
T Consensus 230 v~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 230 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 876432 111110 00 012 35778999999999988776654
No 373
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.98 E-value=0.002 Score=58.01 Aligned_cols=113 Identities=10% Similarity=-0.022 Sum_probs=58.2
Q ss_pred CCcEEEEcCCCCCcC-CCc-hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh------cCCCeEEEEEcc
Q 017100 87 DADLYYWTKSLRPVQ-WYP-GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL------GNRKRILVLNRE 157 (377)
Q Consensus 87 ~~d~vi~d~~L~~~q-w~P-Gh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~-l~~~l------~~k~~ilVlNK~ 157 (377)
+..+.+||+..-... .-. ...+.+.+.+......+|++|+|+|+... ...+.. +..+. ..+|+++|+||+
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 456788887542110 000 01223333333445667999999998643 232222 22222 135899999999
Q ss_pred CCCCHHHHH--------HHHHHHHHcCCeEEEeeCccC-----CCchhhhhHHHHh
Q 017100 158 DMISMADRN--------AWATYFAKQGTKVIFSNGQLG-----MGTMKLSRLAKAL 200 (377)
Q Consensus 158 DL~~~~~~~--------~~~~~~~~~g~~vi~iSa~~g-----~gi~~L~~~l~~l 200 (377)
|+.+..... ...+..++.+..+++++...+ .++.+|.+.+.++
T Consensus 156 D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~ 211 (239)
T 3lxx_A 156 DDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRV 211 (239)
T ss_dssp GGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHH
Confidence 998765433 222334455667777776543 3455555444443
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.95 E-value=0.00049 Score=60.76 Aligned_cols=99 Identities=10% Similarity=0.045 Sum_probs=48.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecC-CCCCCCc--HHHHHHh--------cCCCeEEEE
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVL 154 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar-~p~~~~~--~~l~~~l--------~~k~~ilVl 154 (377)
...++.+||......- .......+...+..+|.+++|+|+. ++.+... ..+..++ .+.|+++|+
T Consensus 53 ~~~~~~l~Dt~G~~~~-----~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 127 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKL-----RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127 (218)
T ss_dssp GGSSCEEEECCCCGGG-----THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred eCceEEEEECCCcHHH-----HHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEE
Confidence 3456788886544211 1111222223334499999999998 5443322 1222222 367899999
Q ss_pred EccCCCCHHHHHHHHHH--------HHHcCCeEEEeeCccCCC
Q 017100 155 NREDMISMADRNAWATY--------FAKQGTKVIFSNGQLGMG 189 (377)
Q Consensus 155 NK~DL~~~~~~~~~~~~--------~~~~g~~vi~iSa~~g~g 189 (377)
||+|+.+......+.+. ....+..++.+|++.|.+
T Consensus 128 nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 128 NKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp ECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99999865432222111 122234556677776643
No 375
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.92 E-value=0.0042 Score=54.17 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=59.2
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHH----HHHHHHHHcC--CeEEEeeCccCCCc
Q 017100 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN----AWATYFAKQG--TKVIFSNGQLGMGT 190 (377)
Q Consensus 119 ~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~----~~~~~~~~~g--~~vi~iSa~~g~gi 190 (377)
..+|.++.++|+..+....+.++..++ .+.|.++|.||+|+.+..+.+ .....+.+.+ ..++++|++++.|+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 578999999999877654333454444 368889999999999865432 2223333333 45678999999999
Q ss_pred hhhhhHHHHhhh
Q 017100 191 MKLSRLAKALAS 202 (377)
Q Consensus 191 ~~L~~~l~~l~~ 202 (377)
.++.+.+.++..
T Consensus 187 ~~l~~~l~~~~~ 198 (210)
T 1pui_A 187 DKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999888776643
No 376
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.86 E-value=0.0015 Score=59.53 Aligned_cols=113 Identities=10% Similarity=-0.024 Sum_probs=64.4
Q ss_pred cCCcEEEEcCCCCCcCCCchHH--HHHHHHHH----HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-c-------CCCeE
Q 017100 86 LDADLYYWTKSLRPVQWYPGHI--AKTEKELK----DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-G-------NRKRI 151 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~--~~~~k~l~----~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-~-------~k~~i 151 (377)
.+..+.+||+..- +.++.. ....+.+. .....+|++|+|+|+.. ....+..+.+++ . +.|++
T Consensus 68 ~~~~i~liDTPG~---~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ii 143 (247)
T 3lxw_A 68 DKCHVEVVDTPDI---FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVI 143 (247)
T ss_dssp TTEEEEEEECCSC---SSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred CCcEEEEEECCCC---CCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEE
Confidence 3556889997643 122211 11223333 33499999999999864 333232322222 1 57899
Q ss_pred EEEEccCCCCHHH---H-----HHHHHHHHHcCCeEEEeeCcc-----CCCchhhhhHHHHhhh
Q 017100 152 LVLNREDMISMAD---R-----NAWATYFAKQGTKVIFSNGQL-----GMGTMKLSRLAKALAS 202 (377)
Q Consensus 152 lVlNK~DL~~~~~---~-----~~~~~~~~~~g~~vi~iSa~~-----g~gi~~L~~~l~~l~~ 202 (377)
++.||+|+..... + ..........|..+++++... +.|+.+|.+.+.++..
T Consensus 144 lv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 144 VFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp EEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 9999999975321 1 112334455676777666554 4567777666665543
No 377
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.76 E-value=0.0012 Score=60.17 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=65.5
Q ss_pred cCCcEEEEcCCCCCcCCCc--hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh----c---CCCeEEEEE-
Q 017100 86 LDADLYYWTKSLRPVQWYP--GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G---NRKRILVLN- 155 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~P--Gh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l----~---~k~~ilVlN- 155 (377)
.+..+.+||+......+.. ..++...+.+...+..+|++++|+|+.. .......+.+++ . ..|.++|+|
T Consensus 69 ~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~n 147 (260)
T 2xtp_A 69 GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTH 147 (260)
T ss_dssp TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEc
Confidence 3556889997543211111 1122334445556788999999999974 222222222222 1 468888888
Q ss_pred ccCCCCHHHHHHHH---------HHHHHcCCeE-----EEeeCccCCCchhhhhHHHHhh
Q 017100 156 REDMISMADRNAWA---------TYFAKQGTKV-----IFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 156 K~DL~~~~~~~~~~---------~~~~~~g~~v-----i~iSa~~g~gi~~L~~~l~~l~ 201 (377)
|+|+.+.. ...+. ......+... +.+|++.+.|+.++.+.+.++.
T Consensus 148 K~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 148 KEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp GGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 99998542 22211 1233333221 5678899989888877766544
No 378
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.75 E-value=0.00084 Score=64.12 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=35.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCCCCceeEEEEEEeC--CceEEEcCCccccC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGIIPM 275 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~--~~~~l~DTPG~i~~ 275 (377)
||.++|-+|||||||++.+.+..........+.|.......++ -.+.+.||+|--..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhc
Confidence 4789999999999999988754211111123344433222222 35889999998543
No 379
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.74 E-value=0.00048 Score=68.39 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred ceeeeEeecCCCCcchhhhhhhc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
+..|+++|.|||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999975
No 380
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.73 E-value=0.002 Score=67.43 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 160 (377)
+..+.+||+ ||| ..+...+...+..+|.+++|+|+..........+.+.+ .+.|+++++||+|+.
T Consensus 73 ~~~~nliDT--------pG~-~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLDA--------PGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEEC--------CCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred CEEEEEEeC--------CCc-cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 344566664 454 34456677889999999999998776543333333332 378999999999986
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.0014 Score=58.04 Aligned_cols=103 Identities=11% Similarity=-0.015 Sum_probs=65.3
Q ss_pred cccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH
Q 017100 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA 163 (377)
Q Consensus 84 ~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~ 163 (377)
...+.|+++||+.... -.|++.. -..+.++.|+|+..... .........+.|.++|+||+|+.+..
T Consensus 105 ~~~~~d~iiidt~G~~--~~~~~~~----------~~~~~~i~vvd~~~~~~--~~~~~~~~~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 105 KFSDCDLLLIENVGNL--ICPVDFD----------LGENYRVVMVSVTEGDD--VVEKHPEIFRVADLIVINKVALAEAV 170 (221)
T ss_dssp GGTTCSEEEEEEEEBS--SGGGGCC----------CSCSEEEEEEEGGGCTT--HHHHCHHHHHTCSEEEEECGGGHHHH
T ss_pred hcCCCCEEEEeCCCCC--CCCchhc----------cccCcEEEEEeCCCcch--hhhhhhhhhhcCCEEEEecccCCcch
Confidence 4457899999876431 1243321 14578999999876532 11110111258899999999996542
Q ss_pred --HHHHHHHHHHHc--CCeEEEeeCccCCCchhhhhHHHHh
Q 017100 164 --DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKAL 200 (377)
Q Consensus 164 --~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~~l~~l 200 (377)
......+.++.. +..++++|+++|.|+.++.+.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 233344444443 3678999999999999988776654
No 382
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.72 E-value=7.8e-05 Score=75.40 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=53.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH--HHHHHH---HHH-HHcC--CeEEEeeCc
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWA---TYF-AKQG--TKVIFSNGQ 185 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~~~---~~~-~~~g--~~vi~iSa~ 185 (377)
..+..+|++++|+|+.++......+....+ .+.|+++++||+|+.+.. ...... ..+ ...+ ..++++||+
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 447889999999999875544333322222 378999999999996421 111000 000 0111 578999999
Q ss_pred cCCCchhhhhHHH
Q 017100 186 LGMGTMKLSRLAK 198 (377)
Q Consensus 186 ~g~gi~~L~~~l~ 198 (377)
+|.|+.+|.+.+.
T Consensus 150 tG~gI~eLle~I~ 162 (501)
T 1zo1_I 150 AGTGIDELLDAIL 162 (501)
T ss_dssp TCTTCTTHHHHTT
T ss_pred eccCcchhhhhhh
Confidence 9999998877654
No 383
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.72 E-value=0.0012 Score=62.70 Aligned_cols=99 Identities=15% Similarity=0.050 Sum_probs=63.3
Q ss_pred HHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhhhh-hhhhhcccCCCCCcee
Q 017100 141 MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD-VNVKRRSKGLLPRAVR 219 (377)
Q Consensus 141 l~~~l~~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~-~~~~~~~~~~~~~~~~ 219 (377)
+++++......+|++|.|..+++.. +..++.+.+++.++..+...+..|..++...... ...+-.. ..-...-
T Consensus 73 ler~l~~~~P~IIltrg~~~peeli----e~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~--v~~~g~~ 146 (314)
T 1ko7_A 73 MRKLCRPETPAIIVTRDLEPPEELI----EAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVL--VDVYGVG 146 (314)
T ss_dssp HHHHCCTTCCCEEECTTCCCCHHHH----HHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEE--EEETTEE
T ss_pred HHHHhcCCCCEEEEeCCCCCCHHHH----HHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEE--EEECCEE
Confidence 5666665666778999999876533 3345568888888877777777776666542111 0000000 0012346
Q ss_pred eeEeecCCCCcchhhhhhhcCCceec
Q 017100 220 AGIVGYPNVGKSSLINRLLKRRMCPA 245 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~~~~~~v 245 (377)
|+++|.+|+||||+.++|.++....+
T Consensus 147 vl~~G~sG~GKSt~a~~l~~~g~~lv 172 (314)
T 1ko7_A 147 VLITGDSGIGKSETALELIKRGHRLV 172 (314)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHhcCCcee
Confidence 89999999999999999997643333
No 384
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.70 E-value=0.0068 Score=63.78 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=46.1
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 017100 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (377)
Q Consensus 88 ~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 161 (377)
..+.+||+ ||| ..+...+...+..+|.+|.|+|+..........+.+.. .+.|+++++||+|+..
T Consensus 82 ~~i~liDT--------PG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 82 HRINIIDT--------PGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eeEEEEeC--------CCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 56677775 565 34556677889999999999999876543332222222 3789999999999864
No 385
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.62 E-value=0.00088 Score=70.11 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=38.1
Q ss_pred ceeeeEeecCCCCcchhhhhhhcCCce-----e------ccC------CCCceeEEEEEEe---CCceEEEcCCcccc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----P------AAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~~~~-----~------v~~------~pgtT~~~~~~~~---~~~~~l~DTPG~i~ 274 (377)
..+|+++|.+|+|||||+|+|++.... . +.+ ..|+|...+...+ +..+.++||||...
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 457999999999999999999843211 0 111 1245544443333 34678999999854
No 386
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.60 E-value=0.0047 Score=64.90 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 161 (377)
+..+.+||+ ||| ..+.......+..+|.+++|+|+..+.......+...+ .+.|+++|+||+|+..
T Consensus 76 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDT--------PGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECC--------CSS-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred CeEEEEEEC--------cCc-cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc
Confidence 556778885 444 23455667788999999999999876554333322222 3789999999999975
No 387
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.59 E-value=0.0033 Score=63.95 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=47.7
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA 163 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~ 163 (377)
.+..+.+||+ ||| ..+...+...+..+|.+++|+|+..+.......+..... +.|+++++||+|+....
T Consensus 80 ~~~~i~liDT--------PG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 80 HDCLVNLLDT--------PGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp TTEEEEEECC--------CCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred CCeEEEEEEC--------CCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 3556778885 343 233455667789999999999998765433333333332 78999999999997643
No 388
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.51 E-value=0.00045 Score=66.78 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC------Cc--HH----HHHHh-----cCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST------TH--PL----MDQWL-----GNRK 149 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~------~~--~~----l~~~l-----~~k~ 149 (377)
+..+.+||...+ ++..+.....++.++.||+|+|..+.... .+ .+ +.... .+.|
T Consensus 192 ~~~l~iwDt~GQ---------e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 192 DLHFKMFDVGGQ---------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp TEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred CeeEEEEeCCCc---------hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 456777876655 33444444678999999999998764220 11 11 22222 2578
Q ss_pred eEEEEEccCCCCHH-----------------HHHHHHHHHH-----------HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 150 RILVLNREDMISMA-----------------DRNAWATYFA-----------KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 150 ~ilVlNK~DL~~~~-----------------~~~~~~~~~~-----------~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+++++||+||.... ......+++. ..+..++++||+++.|+..+.+.+.+
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 99999999985321 1122223332 23456778999999998877665543
No 389
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.49 E-value=0.0023 Score=61.85 Aligned_cols=79 Identities=8% Similarity=0.081 Sum_probs=40.9
Q ss_pred CeEEEEEec-CCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHHHHHHH----HHHHHcCCeEEEeeCccCCCchhhhh
Q 017100 122 DVVIEVRDA-RIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTMKLSR 195 (377)
Q Consensus 122 DlIL~V~Da-r~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~~~~~~~----~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (377)
|+++++++. +......+..+.+.+ .+.|+|+|+||+|+.+..+...+. +.....+..++.+|++.+.+...+..
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~ 226 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKE 226 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHH
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHH
Confidence 457777764 443333333333333 368999999999999877654322 23334567788999999887333444
Q ss_pred HHHHh
Q 017100 196 LAKAL 200 (377)
Q Consensus 196 ~l~~l 200 (377)
++..+
T Consensus 227 l~~~i 231 (361)
T 2qag_A 227 QTRLL 231 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 390
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.49 E-value=0.0032 Score=62.60 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=38.5
Q ss_pred eeeeEeecCCCCcchhhhhhhc-----------------CCceeccCC-CCceeEEE-EE---Ee----CC--ceEEEcC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLK-----------------RRMCPAAPR-PGVTRVLK-WV---RF----GK--DLEFLDS 269 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~-----------------~~~~~v~~~-pgtT~~~~-~~---~~----~~--~~~l~DT 269 (377)
.-|+|+|.+++|||+|+|.|++ .....+++. --+|+.+- |. .+ +. .++|+||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4589999999999999997752 122333322 12566643 21 11 22 3899999
Q ss_pred CccccCCCC
Q 017100 270 PGIIPMRIS 278 (377)
Q Consensus 270 PG~i~~~~~ 278 (377)
.|+.....+
T Consensus 148 EG~~d~~~~ 156 (457)
T 4ido_A 148 QGTFDSQST 156 (457)
T ss_dssp CCBTCTTCC
T ss_pred cCCCCcccC
Confidence 999865443
No 391
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.45 E-value=0.0011 Score=63.65 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCcCCC---chHH-HHHHHHHHHHhh-hcCeEEEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQWY---PGHI-AKTEKELKDQLK-LMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~---PGh~-~~~~k~l~~~i~-~aDlIL~V~Dar~p~~~~~~-~l~~~l~--~k~~ilVlNK~D 158 (377)
..++.+||...-...-. |.+. +...+.+..++. ..++||.|+|+.......+. .+.+.+. +.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46899999875321100 2222 244455556664 45677778888765444332 2444443 679999999999
Q ss_pred CCCHHH-HHHHHHH--H-HHcC-CeEEEeeCccCCCchhhhhHHHH
Q 017100 159 MISMAD-RNAWATY--F-AKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 159 L~~~~~-~~~~~~~--~-~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+.++.. ...+.+. + .+.| ..++.+|++++.|+.+|.+.+.+
T Consensus 209 l~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 986543 1222110 0 0112 24567899999998888776654
No 392
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.33 E-value=0.0029 Score=62.06 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=36.6
Q ss_pred CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCccCCCchhhh
Q 017100 147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (377)
Q Consensus 147 ~k~~ilVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (377)
.+|.++|+||+|+........+.+.+...+..++++||+.+.|+.+|.
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence 589999999999986554555555555446789999999988876653
No 393
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.33 E-value=0.00098 Score=57.59 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=27.6
Q ss_pred eeeEeecCCCCcchhhhhhhcCCc-eeccCCCCceeEEE
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK 256 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~ 256 (377)
.++|+|.+|+|||||+|.|.+... ........+|+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~ 45 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK 45 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence 589999999999999999986432 12345566776644
No 394
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.31 E-value=0.0035 Score=60.17 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=44.2
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCC------CCCCcH------HHHHHh-----cCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP------LSTTHP------LMDQWL-----GNR 148 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p------~~~~~~------~l~~~l-----~~k 148 (377)
.+..+.+||...+ ++..+......+.++.||+|+|..+- ....+. .+...+ .+.
T Consensus 159 ~~v~l~iwDtaGQ---------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~ 229 (340)
T 4fid_A 159 KDIPFHLIDVGGQ---------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA 229 (340)
T ss_dssp SSCEEEEEECCSC---------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred eeeeeccccCCCc---------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence 4566677776554 66667667889999999999998621 011111 122222 357
Q ss_pred CeEEEEEccCCCC
Q 017100 149 KRILVLNREDMIS 161 (377)
Q Consensus 149 ~~ilVlNK~DL~~ 161 (377)
|+++++||+||..
T Consensus 230 piiLv~NK~DL~~ 242 (340)
T 4fid_A 230 VKLIFLNKMDLFE 242 (340)
T ss_dssp EEEEEEECHHHHH
T ss_pred eEEEEEECchhhh
Confidence 8999999999864
No 395
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.29 E-value=0.0079 Score=61.43 Aligned_cols=120 Identities=16% Similarity=0.233 Sum_probs=63.0
Q ss_pred eeeEeecCCCCcchhhhhhhcCCce---------------eccC------CCCceeEE---EEEEeCCceEEEcCCcccc
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMC---------------PAAP------RPGVTRVL---KWVRFGKDLEFLDSPGIIP 274 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~---------------~v~~------~pgtT~~~---~~~~~~~~~~l~DTPG~i~ 274 (377)
+|+|+|...+|||||.-+|+-...+ .+.+ .-|.|... ...+-+..+.|+||||-..
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 6999999999999999998621110 1111 22444332 2222355689999999986
Q ss_pred CCCCcHHHHHHHHHhcc---ccccCcChhHHHHHHHHHHHcCCCCChhhhhhhhccCCCCCcHHHHHHHHHHH
Q 017100 275 MRISDQAAAIKLAICDD---IGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALH 344 (377)
Q Consensus 275 ~~~~~~~~~~~l~~~~~---i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~~~a~~ 344 (377)
... +.+.+++ +++. +-+..-..+.....++..+.+. +...+.-.+|+|-...+..+.++.+..+
T Consensus 113 F~~-Ev~raL~--~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~~ad~~~~~~~i~~~ 179 (548)
T 3vqt_A 113 FSE-DTYRVLT--AVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDREALHPLDVMADIEQH 179 (548)
T ss_dssp CSH-HHHHHHH--SCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSCCCCHHHHHHHHHHH
T ss_pred HHH-HHHHHHH--hcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccchhcchhHhhhhhhhh
Confidence 532 3344444 3322 1122223333444555555443 2233444567775555666666665544
No 396
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.25 E-value=0.0021 Score=61.31 Aligned_cols=99 Identities=8% Similarity=-0.025 Sum_probs=57.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEEEccCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDM 159 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l-------~~k~~ilVlNK~DL 159 (377)
.+.+.+||++.+..-.-|- . ....+++.++.+++|+|..+........+..++ .+.|++++.||+||
T Consensus 45 ~v~LqIWDTAGQErf~~~~-----l-~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL 118 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPS-----Y-DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118 (331)
T ss_dssp SSCEEEEECCSCSSSCCCS-----H-HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS
T ss_pred EEEEEEEECCCchhccchh-----h-hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc
Confidence 4789999988773210000 0 224568999999999999876111111222222 36789999999999
Q ss_pred CCHHHH----HH----HHHHHHH-----cCCeEEEeeCccCCCchh
Q 017100 160 ISMADR----NA----WATYFAK-----QGTKVIFSNGQLGMGTMK 192 (377)
Q Consensus 160 ~~~~~~----~~----~~~~~~~-----~g~~vi~iSa~~g~gi~~ 192 (377)
.+.+++ +. -.+.+.+ .+..++.+|++. .++.+
T Consensus 119 ~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 119 LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp SCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred CchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHH
Confidence 875321 11 1112222 235667789986 34443
No 397
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.23 E-value=0.0085 Score=62.95 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=46.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~ 162 (377)
+..+.+||+... ..+.......+..+|.+|+|+|+..+.......+...+ .+.|+++|+||+|+...
T Consensus 74 ~~~i~liDTPG~---------~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 74 GHRVNIIDTPGH---------VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp TEEEEEECCCCC---------SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CeeEEEEECcCC---------cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 566778886433 12334456678889999999999876554433332222 37899999999999753
No 398
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0022 Score=55.15 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=35.4
Q ss_pred HHHHhhhcCeEEEEEecC-CCCCCCc--HHHHHHh--------cCCCeEEEEEccCCCCHHHHHHHHH
Q 017100 114 LKDQLKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWAT 170 (377)
Q Consensus 114 l~~~i~~aDlIL~V~Dar-~p~~~~~--~~l~~~l--------~~k~~ilVlNK~DL~~~~~~~~~~~ 170 (377)
+...+..+|++++|+|+. ++.+... ..+..++ .+.|+++|+||+|+.+........+
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 344556799999999987 3322111 1122222 2689999999999987654444433
No 399
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.17 E-value=0.0019 Score=61.62 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=64.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecC-------CCCCCCcH-----HHHHHh-----cCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDAR-------IPLSTTHP-----LMDQWL-----GNR 148 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar-------~p~~~~~~-----~l~~~l-----~~k 148 (377)
.+..+.+||...+ ++..+......+.++.||+|+|.. +....... .+.... .+.
T Consensus 165 ~~v~l~iwDtgGQ---------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 165 QSVIFRMVDVGGQ---------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp TTEEEEEEEECCS---------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred eceeeEEEEcCCc---------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 3456667776554 666666667899999999999765 21111111 122222 257
Q ss_pred CeEEEEEccCCCCHH------------------HHHHHHHHHH----------HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 149 KRILVLNREDMISMA------------------DRNAWATYFA----------KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 149 ~~ilVlNK~DL~~~~------------------~~~~~~~~~~----------~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
|+++++||+||.... ..+.-.+|+. ..+..++++||+.+.+++.+...+.+
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 899999999986432 1222223322 12345678999999888776555443
No 400
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.16 E-value=0.0061 Score=62.28 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 017100 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (377)
Q Consensus 103 ~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 161 (377)
-||| ..+..++...+.-+|-++.|+||.......-..+-+.. .+.|+++++||+|...
T Consensus 107 TPGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred CCCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 3888 56778888899999999999999876544333333332 3899999999999853
No 401
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.12 E-value=0.0018 Score=56.42 Aligned_cols=106 Identities=10% Similarity=0.033 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~ 160 (377)
...+.+||..... +...........+|.++.|+|..++.+..+. . +..+. .+.|+++|+||+||.
T Consensus 53 ~~~~~i~Dt~g~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 53 TIKAQIWDTAGQE---------RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEEEEEECSSGG---------GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCch---------hhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 3456677765431 1122233456789999999998765443221 1 11111 256889999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
.... ......+..+.+..++.+|++++.|+.++.+.+.+..
T Consensus 124 ~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4321 1222233455677788899999999998877665543
No 402
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.11 E-value=0.00057 Score=66.28 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC------Cc--HH----HHHHh-----cCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST------TH--PL----MDQWL-----GNRK 149 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~------~~--~~----l~~~l-----~~k~ 149 (377)
+..+.+||...+ ++..+.....++.++.||+|+|..+.... .+ .+ +.... .+.|
T Consensus 200 ~~~l~i~Dt~Gq---------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 200 NVPFKMVDVGGQ---------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp TEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred CeEEEEEeccch---------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 344556665443 55555555678999999999998763100 11 11 22222 2578
Q ss_pred eEEEEEccCCCCHH------------------HHHHHHHHH----H-------HcCCeEEEeeCccCCCchhhhhHHHH
Q 017100 150 RILVLNREDMISMA------------------DRNAWATYF----A-------KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (377)
Q Consensus 150 ~ilVlNK~DL~~~~------------------~~~~~~~~~----~-------~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (377)
+++++||+||.... ......+++ . ..+..++++||+++.|+..+.+.+.+
T Consensus 271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 99999999985221 112222222 1 22456788999999999887665544
No 403
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.08 E-value=0.0042 Score=64.27 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..++|||.+|+|||||+|+|.|-
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 35999999999999999999975
No 404
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.04 E-value=0.0087 Score=57.51 Aligned_cols=109 Identities=8% Similarity=-0.043 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCcC----CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc--CCCeEEEEEccC
Q 017100 87 DADLYYWTKSLRPVQ----WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG--NRKRILVLNRED 158 (377)
Q Consensus 87 ~~d~vi~d~~L~~~q----w~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~--~~l~~~l~--~k~~ilVlNK~D 158 (377)
..++.+||....... ...+........+..++.++|+|++++|+........ ..+.+.+. +++.++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567899997653211 0112233445556688999999999998653322212 22333332 578999999999
Q ss_pred CCCHHHHHHHHHHHH----HcCCeEEEeeCccCCCchhhhhHH
Q 017100 159 MISMADRNAWATYFA----KQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 159 L~~~~~~~~~~~~~~----~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
++++... +.+.+. ..+..++.++++.+.+++......
T Consensus 215 l~~~~~~--~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 215 LMDKGTD--AVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp GCCTTCC--SHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred cCCCccc--HHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 9865421 122222 234567788888887776654443
No 405
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.02 E-value=0.0019 Score=62.31 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCC-------CCCCCc-HH----HHHHh-----cCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI-------PLSTTH-PL----MDQWL-----GNRK 149 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~-------p~~~~~-~~----l~~~l-----~~k~ 149 (377)
...+.+||...+ ++..+.....++.++.+|+|+|... ...... .+ +.... .+.|
T Consensus 182 ~v~l~iwDtaGQ---------e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQ---------RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCS---------TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCc---------hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 456777777665 3334444467899999999999761 111111 11 22222 2578
Q ss_pred eEEEEEccCCC
Q 017100 150 RILVLNREDMI 160 (377)
Q Consensus 150 ~ilVlNK~DL~ 160 (377)
+++|+||+||.
T Consensus 253 iiLvgNK~DL~ 263 (354)
T 2xtz_A 253 FMLFLNKFDIF 263 (354)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECcchh
Confidence 99999999984
No 406
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.01 E-value=0.0098 Score=53.16 Aligned_cols=92 Identities=9% Similarity=-0.080 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-CcHHH---HHHh------cCCCeEEEEEcc-CCCCHHHHHHHHHHHH-
Q 017100 106 HIAKTEKELKDQLKLMDVVIEVRDARIPLST-THPLM---DQWL------GNRKRILVLNRE-DMISMADRNAWATYFA- 173 (377)
Q Consensus 106 h~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~-~~~~l---~~~l------~~k~~ilVlNK~-DL~~~~~~~~~~~~~~- 173 (377)
.+.+++...+.+.+.+|.||+|+|+.+.... ...++ ..++ .+.|+++..||. |+...-...+..+.+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L 190 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHL 190 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTG
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCC
Confidence 4566666667899999999999999765322 22334 2222 245888888996 6742211122222221
Q ss_pred -H--cCCeEEEeeCccCCCchhhhhHH
Q 017100 174 -K--QGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 174 -~--~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
. ..-.+..+||.+|.|+.+-.+.+
T Consensus 191 ~~l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 191 NLLNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp GGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred cCCCCCEEEEEeECCCCcCHHHHHHHH
Confidence 1 12457789999999986654443
No 407
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.91 E-value=0.012 Score=51.87 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=47.7
Q ss_pred cCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH--HHHHHHHHHHHc--CCeEEEeeCccCCCchhhhhH
Q 017100 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRL 196 (377)
Q Consensus 121 aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~--~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~~ 196 (377)
.+.+++|+|+.......... ... ..+|.++|+||+|+.+.. ......++++.. +..++++|+++|.|+.++.+.
T Consensus 140 ~~~~~~v~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 140 THKRIVVISTTEGDDTIEKH-PGI-MKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp CSEEEEEEEGGGCTTTTTTC-HHH-HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHH
T ss_pred cCcEEEEEecCcchhhHhhh-hhH-hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHH
Confidence 34566777764322211111 111 257899999999996542 233333444433 468899999999999998776
Q ss_pred HHH
Q 017100 197 AKA 199 (377)
Q Consensus 197 l~~ 199 (377)
+.+
T Consensus 218 l~~ 220 (226)
T 2hf9_A 218 IEK 220 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 408
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.86 E-value=0.011 Score=56.46 Aligned_cols=105 Identities=11% Similarity=-0.014 Sum_probs=63.0
Q ss_pred ccccCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCC-
Q 017100 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS- 161 (377)
Q Consensus 83 ~~~~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~- 161 (377)
....+.+++++|+..-.-. . ..+.+.+|+++.|+|+..+... ..+...+...+.++++||+|+.+
T Consensus 143 ~~~~~~~~iliDT~Gi~~~---~---------~~v~~~~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 143 CEAAGFDVILVETVGVGQS---E---------TAVADLTDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDG 208 (337)
T ss_dssp HHHTTCCEEEEEECSSSSC---H---------HHHHTTSSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCC
T ss_pred HhcCCCCEEEEECCCCCcc---h---------hhHHhhCCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCc
Confidence 3345788999998754211 1 1245899999999997533210 00100111346688889999865
Q ss_pred HHHHHHHHHHHHH-----c------CCeEEEeeCccCCCchhhhhHHHHhh
Q 017100 162 MADRNAWATYFAK-----Q------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (377)
Q Consensus 162 ~~~~~~~~~~~~~-----~------g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (377)
..........+.. . ..+++++|+.++.|+++|.+.+.++.
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3322222222221 1 35789999999999999988877653
No 409
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.84 E-value=0.0027 Score=62.31 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCC------CCCCc--HH----HHHHh-----cCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP------LSTTH--PL----MDQWL-----GNRK 149 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p------~~~~~--~~----l~~~l-----~~k~ 149 (377)
+..+.+||...+ ++..+.....++.++.||+|+|..+. ..+.+ .+ +.... .+.|
T Consensus 216 ~v~l~iwDtaGQ---------e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 216 KVNFHMFDVGGQ---------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 286 (402)
T ss_dssp TEEEEEEEECCS---------GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC
T ss_pred Cccceecccchh---------hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe
Confidence 345667776555 44455555678999999999998761 00011 11 22222 2468
Q ss_pred eEEEEEccCCCC
Q 017100 150 RILVLNREDMIS 161 (377)
Q Consensus 150 ~ilVlNK~DL~~ 161 (377)
++|++||+||..
T Consensus 287 iiLvgNK~DL~~ 298 (402)
T 1azs_C 287 VILFLNKQDLLA 298 (402)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEEChhhhh
Confidence 999999999843
No 410
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.76 E-value=0.004 Score=64.80 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 160 (377)
||| ..+..++...+.-+|.++.|+||.......-..+-+.. .+.|+++++||+|..
T Consensus 75 PGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 75 PGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp CCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred CCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 898 56778888899999999999999987655444433333 378999999999975
No 411
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.64 E-value=0.016 Score=57.50 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred CceeeeEeecCCCCcchhhhhhh
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLL 238 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~ 238 (377)
.+..|+++|.+||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35679999999999999999997
No 412
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.42 E-value=0.0054 Score=54.18 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=26.4
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCce-eccCCCCceeE
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRV 254 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~ 254 (377)
.-++|+|.+|||||||++.|.+.... .......+|+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~ 46 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRL 46 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEeccccc
Confidence 35899999999999999999875432 33334445554
No 413
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.37 E-value=0.0045 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
+++++|.+|+|||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 414
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.26 E-value=0.0046 Score=54.27 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.1
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+|.+|+|||||+|.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 415
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.21 E-value=0.03 Score=57.14 Aligned_cols=62 Identities=21% Similarity=0.082 Sum_probs=42.4
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCC-CCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHH
Q 017100 111 EKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF 172 (377)
Q Consensus 111 ~k~l~~~i~~aDlIL~V~Dar~p~-~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~~~~~~ 172 (377)
.+.+...+.++|+|++|+|+..+. ......+...+. +.|+++|+||+|+++.++.......+
T Consensus 179 ~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 179 PAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 345567789999999999997642 222223333333 46899999999999887665544433
No 416
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.16 E-value=0.0045 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..|+|+|.||+|||||.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999854
No 417
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.11 E-value=0.0083 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.7
Q ss_pred eeeeEeecCCCCcchhhhhhhcC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..++++|.+|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999864
No 418
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.99 E-value=0.0068 Score=54.32 Aligned_cols=37 Identities=30% Similarity=0.231 Sum_probs=26.5
Q ss_pred eeeeEeecCCCCcchhhhhhhcCCce--eccCCCCceeE
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRV 254 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~~~--~v~~~pgtT~~ 254 (377)
-.++|+|.+|+|||||++.|.+.... ..+....+|+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 35899999999999999999975431 23344445544
No 419
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.95 E-value=0.0099 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.9
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.+..|+|+|.+++|||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 420
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.91 E-value=0.01 Score=61.73 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=36.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCCce-----e------ccCC------CCceeEEEEE---EeCCceEEEcCCccccC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMC-----P------AAPR------PGVTRVLKWV---RFGKDLEFLDSPGIIPM 275 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~-----~------v~~~------pgtT~~~~~~---~~~~~~~l~DTPG~i~~ 275 (377)
+|+|+|...+|||||..+|+..... . +.|. -|.|...... +-+..+.|+||||-...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 5899999999999999998621110 1 1111 1555443222 22557889999999754
No 421
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.75 E-value=0.0077 Score=52.68 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=27.7
Q ss_pred eeEeecCCCCcchhhhhhhcCCc-eeccCCCCceeEEE
Q 017100 220 AGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK 256 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~ 256 (377)
|.|+|.+||||+||++.|..+.. ...-..+.|||...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR 41 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPR 41 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCC
Confidence 68999999999999999985432 12335677887654
No 422
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.74 E-value=0.0081 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+|.+|+|||||+|.|.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 423
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.69 E-value=0.01 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.2
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+|.+|+|||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 424
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.65 E-value=0.041 Score=51.57 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=29.6
Q ss_pred CCCeEEEEEccCCCCHHHHH----HHHHHHHHcCCeEEEeeCccCCCchhhhhHH
Q 017100 147 NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 147 ~k~~ilVlNK~DL~~~~~~~----~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
..++++|+||+|+....+.. ...++....+..++.+|++++ +++++...+
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l 208 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQ 208 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHH
Confidence 46899999999999865432 334455667888889999999 888765443
No 425
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.64 E-value=0.0041 Score=53.87 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=54.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCccC
Q 017100 116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (377)
Q Consensus 116 ~~i~~aDlIL~V~Dar~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~g 187 (377)
..+..+|.++.|+|..+..+..+.. +..+. .+.++++++||+||.+... ......+..+.+..++.+|++++
T Consensus 97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS 176 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 4567889999999987643322211 11111 2568899999999964321 12222334456677888999999
Q ss_pred CCchhhhhHHHH
Q 017100 188 MGTMKLSRLAKA 199 (377)
Q Consensus 188 ~gi~~L~~~l~~ 199 (377)
.|+.++.+.+.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999888776543
No 426
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.54 E-value=0.0096 Score=53.05 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.2
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+|.+|+|||||+|.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 427
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.44 E-value=0.011 Score=51.12 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.9
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++++|.+|+|||||+|.|.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5899999999999999999863
No 428
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.44 E-value=0.01 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.5
Q ss_pred eeEeecCCCCcchhhhhhhcC
Q 017100 220 AGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 220 v~lvG~pNvGKSSLiN~L~~~ 240 (377)
++|+|.+|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 799999999999999999864
No 429
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.26 E-value=0.016 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred ceeeeEeecCCCCcchhhhhhhcC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
+..|+|+|.+++|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 430
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.20 E-value=0.016 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++++|.+|+|||||++.|.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999743
No 431
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.17 E-value=0.016 Score=50.36 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.0
Q ss_pred eeeeEeecCCCCcchhhhhhhcCC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
..++|+|.+|+||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999999998643
No 432
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.17 E-value=0.028 Score=60.31 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHH-hcCCCeEEEEEccCCC
Q 017100 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQW-LGNRKRILVLNREDMI 160 (377)
Q Consensus 87 ~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l-~~~-l~~k~~ilVlNK~DL~ 160 (377)
+..+.+||+. || ..+.......+..+|.+|.|+|+.++.......+ ... ..+.|+++++||+|+.
T Consensus 97 ~~~i~liDTP--------G~-~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSP--------GH-VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCC--------CC-CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECc--------Cc-hhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 4556777753 33 2234456677899999999999998765444332 222 2378999999999986
No 433
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.12 E-value=0.015 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++++|.+|+|||||++.|.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999743
No 434
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.12 E-value=0.017 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=15.5
Q ss_pred eeeeEeecCCCCcchhhhhhh-cC
Q 017100 218 VRAGIVGYPNVGKSSLINRLL-KR 240 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~-~~ 240 (377)
..++|+|.+|+|||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999999 64
No 435
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=94.10 E-value=0.049 Score=51.00 Aligned_cols=92 Identities=9% Similarity=-0.058 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC-cHHHH---HH------hcCCCeEEEEEcc-CCCCHHHHHHHHHHHH-
Q 017100 106 HIAKTEKELKDQLKLMDVVIEVRDARIPLSTT-HPLMD---QW------LGNRKRILVLNRE-DMISMADRNAWATYFA- 173 (377)
Q Consensus 106 h~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~-~~~l~---~~------l~~k~~ilVlNK~-DL~~~~~~~~~~~~~~- 173 (377)
.+.+++...+.+.+++|.||+|+|+.+..-.. ..++. .+ +.+.|++|..||. |+...-...+..+.+.
T Consensus 196 GQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L 275 (312)
T 3l2o_B 196 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHL 275 (312)
T ss_dssp -CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTG
T ss_pred CHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCC
Confidence 34555566668899999999999997654322 22222 22 2467899999974 7743211222222221
Q ss_pred -H--cCCeEEEeeCccCCCchhhhhHH
Q 017100 174 -K--QGTKVIFSNGQLGMGTMKLSRLA 197 (377)
Q Consensus 174 -~--~g~~vi~iSa~~g~gi~~L~~~l 197 (377)
+ ..-.+..+||.+|.|+.+-.+.+
T Consensus 276 ~~l~r~W~Iq~csA~tGeGL~EGldWL 302 (312)
T 3l2o_B 276 NLLNHPWLVQDTEAETLTGFLNGIEWI 302 (312)
T ss_dssp GGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred ccCCCcEEEEecccCCCcCHHHHHHHH
Confidence 1 12457789999999987654443
No 436
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.08 E-value=0.015 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.1
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.|+|+|.+++|||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 437
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.04 E-value=0.0078 Score=51.85 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.9
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|||.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 438
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.03 E-value=0.016 Score=49.48 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.7
Q ss_pred eeeeEeecCCCCcchhhhhhh
Q 017100 218 VRAGIVGYPNVGKSSLINRLL 238 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~ 238 (377)
-.++++|.+|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 358999999999999999865
No 439
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.95 E-value=0.053 Score=56.98 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.4
Q ss_pred eeeeEeecCCCCcchhhhhhh
Q 017100 218 VRAGIVGYPNVGKSSLINRLL 238 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~ 238 (377)
.+|+|+|...+|||||.-+|+
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL 34 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVL 34 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 369999999999999999986
No 440
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.93 E-value=0.017 Score=54.45 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.1
Q ss_pred eeeeEeecCCCCcchhhhhhhc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
-.++|+|.+|+|||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999999985
No 441
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.93 E-value=0.02 Score=50.77 Aligned_cols=29 Identities=14% Similarity=-0.050 Sum_probs=23.4
Q ss_pred eeeEeecCCCCcchhhhhhhcCCceeccCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPR 248 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~~~~v~~~ 248 (377)
.++++|..|+|||||++.|.+- ....+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 4899999999999999999986 4433443
No 442
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.90 E-value=0.016 Score=49.90 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.3
Q ss_pred eeeEeecCCCCcchhhhhhhc
Q 017100 219 RAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~ 239 (377)
.++++|.+++|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999985
No 443
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.90 E-value=0.062 Score=56.48 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCH
Q 017100 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISM 162 (377)
Q Consensus 104 PGh~~~~~k~l~~~i~~aDlIL~V~Dar~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~ 162 (377)
||| ..+..++...+.-+|-++.|+|+.......-..+-+. . .+.|+++++||+|....
T Consensus 93 PGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 93 PGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred CCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 888 5678888899999999999999987665443333332 2 38899999999998643
No 444
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.89 E-value=0.019 Score=50.16 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=20.0
Q ss_pred eeeeEeecCCCCcchhhhhhhc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
..++|+|.+|+|||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 445
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.86 E-value=0.019 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.9
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+|.+|+|||||++.|.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 446
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.73 E-value=0.02 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++++|..|+|||||+|.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999743
No 447
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.72 E-value=0.02 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+|.+|+|||||++.|.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 448
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.71 E-value=0.02 Score=51.93 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.4
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++++|.+|+|||||++.|.|-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 449
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.70 E-value=0.021 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++++|.+|+|||||++.|.|-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999974
No 450
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.69 E-value=0.019 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+|.+|+|||||++.|.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999743
No 451
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.65 E-value=0.025 Score=51.32 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcCC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
-.++++|.+|+|||||++.|.|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999753
No 452
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.64 E-value=0.02 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++++|..|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 453
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.60 E-value=0.022 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+|.+|+|||||++.|.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999743
No 454
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.59 E-value=0.022 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++++|..|+|||||++.|.|-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 455
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.58 E-value=0.024 Score=51.16 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.2
Q ss_pred ceeeeEeecCCCCcchhhhhhh
Q 017100 217 AVRAGIVGYPNVGKSSLINRLL 238 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~ 238 (377)
+..|+|+|.+|+|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999998
No 456
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.56 E-value=0.072 Score=53.71 Aligned_cols=105 Identities=18% Similarity=0.105 Sum_probs=60.0
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHh--hhcCeEEEEEecCCCCCCCcHHHHHHhc-CCCe-EEEEEccCCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLMDQWLG-NRKR-ILVLNREDMIS 161 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~i--~~aDlIL~V~Dar~p~~~~~~~l~~~l~-~k~~-ilVlNK~DL~~ 161 (377)
.+.|++++|+...... -.....++.... -.+|.+++|+|+..... .....+.+. ..|+ .+|+||+|...
T Consensus 182 ~~~DvvIIDTpG~~~~-----~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQ-----EDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDKVDVASVIVTKLDGHA 254 (504)
T ss_dssp TTCCEEEEEECCCCTT-----CHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHHHCCCCEEEECTTSCC
T ss_pred CCCcEEEEeCCCCccc-----chhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhhcCceEEEEeCCcccc
Confidence 6789999998765321 122333333222 27899999999987532 222322222 3564 89999999875
Q ss_pred HHH-HHHHHHHHHHcCCeEE------------------EeeCccCCC-chhhhhHHHHh
Q 017100 162 MAD-RNAWATYFAKQGTKVI------------------FSNGQLGMG-TMKLSRLAKAL 200 (377)
Q Consensus 162 ~~~-~~~~~~~~~~~g~~vi------------------~iSa~~g~g-i~~L~~~l~~l 200 (377)
... ...+ ....+.++. ++|+..|.| +..|.+.+.+.
T Consensus 255 ~~g~~l~~---~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGALSA---VAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHHHH---HHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred chHHHHHH---HHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 432 1122 223344432 346667777 76666655443
No 457
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.55 E-value=0.021 Score=52.49 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.6
Q ss_pred eeeEeecCCCCcchhhhhhhc
Q 017100 219 RAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~ 239 (377)
.++++|.+|+|||||+++|.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999985
No 458
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.55 E-value=0.027 Score=47.68 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.9
Q ss_pred eeeeEeecCCCCcchhhhhhhc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
..++++|.+++||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 459
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.54 E-value=0.019 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.0
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++++|.+++|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999864
No 460
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.50 E-value=0.026 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.0
Q ss_pred ceeeeEeecCCCCcchhhhhhhcC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
+..|+|+|.+|+|||||.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 461
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.45 E-value=0.024 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.5
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+|.+|+|||||++.|.|-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999974
No 462
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.43 E-value=0.024 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+|..|+|||||++.|.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58999999999999999999743
No 463
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.43 E-value=0.024 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++++|..|+|||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999754
No 464
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.42 E-value=0.025 Score=51.30 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++++|..|+|||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999743
No 465
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.35 E-value=0.025 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.6
Q ss_pred eeeEeecCCCCcchhhhhhhc
Q 017100 219 RAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~ 239 (377)
.|+|+|.+++||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999986
No 466
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.34 E-value=0.026 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.4
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+|.+|+|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 467
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.33 E-value=0.026 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.5
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+|.+|+|||||++.|.|-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
No 468
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.33 E-value=0.03 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.9
Q ss_pred eeeeEeecCCCCcchhhhhhhc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
..|.++|.|++||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999985
No 469
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.32 E-value=0.026 Score=51.77 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+|..|+|||||++.|.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 470
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.31 E-value=0.026 Score=52.04 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.5
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+|..|+|||||+|.|.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 471
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.26 E-value=0.027 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+|..|+|||||++.|.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999743
No 472
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.25 E-value=0.026 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.6
Q ss_pred eeeeEeecCCCCcchhhhhhhcC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..|+|+|.+|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 473
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.24 E-value=0.017 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.8
Q ss_pred eeeeEeecCCCCcchhhhhhhcC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
-.++|||.+|+|||||++.|.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 36899999999999999999974
No 474
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.23 E-value=0.028 Score=46.92 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=18.0
Q ss_pred eeeEeecCCCCcchhhhhh
Q 017100 219 RAGIVGYPNVGKSSLINRL 237 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L 237 (377)
.|+++|.||+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 475
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.19 E-value=0.035 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
+..|.++|.||+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999974
No 476
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.18 E-value=0.028 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++++|..|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999743
No 477
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.17 E-value=0.028 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++++|..|+|||||++.|.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 478
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.05 E-value=0.088 Score=51.79 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=38.0
Q ss_pred cCeEEEEEecC-CCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHHHHH----HHHHHHHcCCeEEEeeCccCCCchhh
Q 017100 121 MDVVIEVRDAR-IPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKL 193 (377)
Q Consensus 121 aDlIL~V~Dar-~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~~~~~----~~~~~~~~g~~vi~iSa~~g~gi~~L 193 (377)
++++|+..+.. ..+...+..+.+.+ .+.++|+|+||+|+.++.+... ..+.+...+..++.+|++.+.++.++
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKL 217 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHH
Confidence 44455555433 23332232233333 4678999999999998766543 33445566888888999888776654
No 479
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.03 E-value=0.039 Score=48.19 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhcC
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
...|+|+|.+++||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999864
No 480
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.02 E-value=0.18 Score=46.07 Aligned_cols=76 Identities=16% Similarity=0.057 Sum_probs=42.9
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHHH--hhhcCeEEEEEecCCCC-CCCcHHHHHHh----cC---CCeEEEEE
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQ--LKLMDVVIEVRDARIPL-STTHPLMDQWL----GN---RKRILVLN 155 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~~--i~~aDlIL~V~Dar~p~-~~~~~~l~~~l----~~---k~~ilVlN 155 (377)
.+..+.+||+......... .....+.+.+. ...+|++|+|+|..... ...+..+.+.+ .. +|+++|+|
T Consensus 85 ~~~~l~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~n 162 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYI--NDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT 162 (270)
T ss_dssp TTEEEEEEECCCSEETTEE--CHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred CCeEEEEEECCCCCCCccc--hHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEE
Confidence 4557889997654221110 02233444433 24799999998875422 11122222222 21 58999999
Q ss_pred ccCCCCHH
Q 017100 156 REDMISMA 163 (377)
Q Consensus 156 K~DL~~~~ 163 (377)
|+|+.+++
T Consensus 163 K~Dl~~~~ 170 (270)
T 1h65_A 163 HAQFSPPD 170 (270)
T ss_dssp CCSCCCGG
T ss_pred CcccCCcC
Confidence 99998765
No 481
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.01 E-value=0.034 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.0
Q ss_pred CceeeeEeecCCCCcchhhhhhhcC
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.+..|+|+|.+|+|||||++.|.+-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4567999999999999999999863
No 482
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.93 E-value=0.029 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+|.+|+|||||++.|.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58999999999999999999743
No 483
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.90 E-value=0.034 Score=52.94 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.3
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++++|.+|+|||||+|+|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 484
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.90 E-value=0.033 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.7
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.|+|+|.|++||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 485
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.89 E-value=0.032 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred eeeeEeecCCCCcchhhhhhhcC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
..|+|+|.+|+||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 486
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.85 E-value=0.037 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred eeeeEeecCCCCcchhhhhhhc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
..|+++|.+++||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 487
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.85 E-value=0.066 Score=49.99 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=21.4
Q ss_pred CceeeeEeecCCCCcchhhhhhhc
Q 017100 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 216 ~~~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
.+..|+|+|.+++|||||.+.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 488
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.80 E-value=0.068 Score=52.85 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.9
Q ss_pred ceeeeEeecCCCCcchhhhhhh
Q 017100 217 AVRAGIVGYPNVGKSSLINRLL 238 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~ 238 (377)
+..|+++|.+||||||+...|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999987
No 489
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.73 E-value=0.038 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.8
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.|.++|.|++||||+.+.|..+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999853
No 490
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.71 E-value=0.034 Score=47.93 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.4
Q ss_pred eeeEeecCCCCcchhhhhhhc
Q 017100 219 RAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~ 239 (377)
.|+|+|.+++||||+.+.|.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 489999999999999999985
No 491
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.69 E-value=0.036 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.4
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++++|.+|+|||||++.|.|-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999975
No 492
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.66 E-value=0.043 Score=46.45 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.1
Q ss_pred eeeeEeecCCCCcchhhhhhhcCC
Q 017100 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
-.++++|..++|||||++.|.+.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998743
No 493
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.65 E-value=0.036 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.3
Q ss_pred eeeEeecCCCCcchhhhhhhcC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKR 240 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~ 240 (377)
.++|+|.+|+|||||+|+|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 494
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.62 E-value=0.44 Score=47.08 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=59.1
Q ss_pred cCCcEEEEcCCCCCcCCCchHHHHHHHHHHH--HhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC
Q 017100 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKD--QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (377)
Q Consensus 86 ~~~d~vi~d~~L~~~qw~PGh~~~~~k~l~~--~i~~aDlIL~V~Dar~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~ 161 (377)
.+.|++++|+...... -.....++.+ .+...|.+++|+|+.... ......+.+. .....+|+||.|...
T Consensus 181 ~~~DvVIIDTaGrl~~-----d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKE-----DKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp TTCSEEEEECCCCSSC-----CHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred CCCCEEEEECCCcccc-----hHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcc
Confidence 5699999998854322 1223333332 234579999999998632 1222222222 344568999999976
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCccCCCchhhh
Q 017100 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (377)
Q Consensus 162 ~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (377)
.... ........+.++.|++. |.++++|.
T Consensus 254 ~gG~--~ls~~~~~g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 254 KGGG--ALSAVAATGAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp SHHH--HHHHHHTTCCCEEEEEC--SSSTTCEE
T ss_pred cccH--HHHHHHHHCCCEEEEEc--CCChHHhh
Confidence 5431 22233456788888876 77777653
No 495
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.59 E-value=0.042 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.4
Q ss_pred ceeeeEeecCCCCcchhhhhhhc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
+..|+++|.|++||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
No 496
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.58 E-value=0.035 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.1
Q ss_pred eeeeEeecCCCCcchhhhhhhc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
-.++|+|.+++|||||++.|.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 497
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.50 E-value=0.041 Score=47.87 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.9
Q ss_pred eeeeEeecCCCCcchhhhhhhc
Q 017100 218 VRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 218 ~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
..|+++|.|++||||+.+.|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 498
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.50 E-value=0.041 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.9
Q ss_pred eeeEeecCCCCcchhhhhhhcCC
Q 017100 219 RAGIVGYPNVGKSSLINRLLKRR 241 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~~~ 241 (377)
.++|+|..|+|||||++.|.|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999753
No 499
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.45 E-value=0.048 Score=47.56 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.8
Q ss_pred ceeeeEeecCCCCcchhhhhhhc
Q 017100 217 AVRAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 217 ~~~v~lvG~pNvGKSSLiN~L~~ 239 (377)
+..|+++|.+++|||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 500
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.44 E-value=0.047 Score=46.53 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.3
Q ss_pred eeeEeecCCCCcchhhhhhhc
Q 017100 219 RAGIVGYPNVGKSSLINRLLK 239 (377)
Q Consensus 219 ~v~lvG~pNvGKSSLiN~L~~ 239 (377)
.|.|.|.|++||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
Done!