BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017101
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 156/305 (51%), Gaps = 15/305 (4%)
Query: 72 VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHP-TYFVGQVGED 130
VVGS+N DI +++D K GET A GGKGANQA AK+ FV +G D
Sbjct: 19 VVGSSNIDIVLKVDHFTKPGETQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGND 78
Query: 131 ANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKF 190
L+ + G+ Y+ V +PTG A + + GQN III G N E
Sbjct: 79 DYSDLLIENYEKLGIT-GYIRV----SLPTGRAFIEVDKTGQNRIIIFPGANAELKKELI 133
Query: 191 GDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDI 250
D + ++ I+LLQ EIP ++ AK R G+ VIFD I +E+ ++D
Sbjct: 134 ---DWNTLSESDILLLQNEIPFETTLECAK--RFNGI-VIFDPAPAQG-INEEIFQYLDY 186
Query: 251 LSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSI 310
L+PNE E+ L+ + + +A K ++GV+ V+VKLG KG L + EK K
Sbjct: 187 LTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKNEK--KHFP 244
Query: 311 IPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSV 370
+ +DTT AGD F +FAV EGK+ EE + F AAA++ V GA S+P R+ V
Sbjct: 245 TFKVKAVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAAAISVTRLGAQSSIPAREEV 304
Query: 371 LNLLQ 375
L+
Sbjct: 305 EAFLK 309
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 16/302 (5%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQ-TLAGGKGANQAACGAKLSHPTYFVGQVG 128
+V++GS N D ++ ++R + GET+ + +Q GGKGANQA A++ T F+ ++G
Sbjct: 5 VVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIG 64
Query: 129 EDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPE 188
D I + + Y ++K TG A + + ++GQN+I + GG NM+ PE
Sbjct: 65 TDGVADFILEDFKVAHIDTSY--IIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPE 122
Query: 189 KFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFI 248
+ + + A V+ Q E+P I + A++ GV + + A +P ELL+ I
Sbjct: 123 DVINAK-DAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKA-LPNELLSLI 180
Query: 249 DILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQ 308
DI+ PNE+E L+G+ + + + + +G++ VL+ LG +G+ + +
Sbjct: 181 DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKNQS---- 236
Query: 309 SIIPAARV--IDTTGAGDTFTASFAVGFVEGKSRE---ECLRFAAAAASLCVQVKGAIPS 363
I A +V IDTT AGDTF +F KS++ + + F A+SL VQ GA S
Sbjct: 237 QHIEAYKVNAIDTTAAGDTFIGAFVSRL--NKSQDNLADAIDFGNKASSLTVQKHGAQAS 294
Query: 364 MP 365
+P
Sbjct: 295 IP 296
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 157/306 (51%), Gaps = 16/306 (5%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
LVV+GS N D + + P GETV Q GGKGANQA + F+ G+
Sbjct: 7 LVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGD 66
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
D+ G+ + L+ + + ++V+K G TG A++ + +G+N I I G N + P
Sbjct: 67 DSIGESVRQQLATDNIDITPVSVIK--GESTGVALIFVNGEGENVIGIHAGANAALSP-A 123
Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAP---IPQELLN 246
+ E + A +L+Q E P + AK A V + AP +P ELL
Sbjct: 124 LVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNP----APARELPDELLA 179
Query: 247 FIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPI 306
+DI++PNE+E +LTG+ ++ E ++A H+ G++ VL+ LG++G V GE
Sbjct: 180 LVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEG-- 237
Query: 307 KQSIIPAARV--IDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSM 364
+P RV +DT AGDTF + +E K E +RFA AAA++ V KGA PS+
Sbjct: 238 --QRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV 295
Query: 365 PDRKSV 370
P R+ +
Sbjct: 296 PWREEI 301
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 144/303 (47%), Gaps = 13/303 (4%)
Query: 74 GSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANG 133
GS D+ RLPK GET+ GGKGANQ A+L T V +VG+D+ G
Sbjct: 31 GSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFG 90
Query: 134 KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDE 193
+ L + ++ KD TG A +++ ++GQN I+IV G N+ E
Sbjct: 91 NDYIENLKQNDISTEFTYQTKDAA--TGTASIIVNNEGQNIIVIVAGANL-----LLNTE 143
Query: 194 DLE----VVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249
DL V+ +A +++ Q EI + +++ AR +GV +F+ A + + D
Sbjct: 144 DLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQFYTLSD 203
Query: 250 ILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQS 309
+ NESE LTG+ S EA + K G Q V++ LGA+G + + E K
Sbjct: 204 VFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHI 263
Query: 310 IIPAARVIDTTGAGDTFTA--SFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDR 367
+ +DTTGAGD+F +F + + S E+ L + A++ VQ G S P +
Sbjct: 264 PTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYK 323
Query: 368 KSV 370
K +
Sbjct: 324 KDL 326
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 141/323 (43%), Gaps = 36/323 (11%)
Query: 70 LVVVGSANFDI--------YVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPT 121
++ +G+A DI ++D P E +A T GG N+A ++L H T
Sbjct: 8 VICIGAAIVDIPLQPVSKNIFDVDSYPL--ERIAXTT-----GGDAINEATIISRLGHRT 60
Query: 122 YFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT 181
++G+DA G+ I D +D ++ +D + T V ++ DG+ + V
Sbjct: 61 ALXSRIGKDAAGQFILDHCRK--ENIDIQSLKQDVSIDTSINVGLVTEDGERTF--VTNR 116
Query: 182 NMSCWPEKFGDEDLEVVKKAGIVLLQREIPDS--------VNIQVAKAARSAGVPVIFDA 233
N S W D D +A ++ L I +S I AR +
Sbjct: 117 NGSLWKLNIDDVDFARFSQAKLLSLA-SIFNSPLLDGKALTEIFTQAKARQXIICADXIK 175
Query: 234 GGMDAPIPQ--ELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKL 291
++ + E L+++D L PN +E LTG T ++I++ + C GV+ V++K
Sbjct: 176 PRLNETLDDICEALSYVDYLFPNFAEAKLLTGKET--LDEIADCFLAC---GVKTVVIKT 230
Query: 292 GAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAA 351
G G G+ K + IDT GAGD F + F +EGK+ EC RFA A A
Sbjct: 231 GKDG-CFIKRGDXTXKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATA 289
Query: 352 SLCVQVKGAIPSMPDRKSVLNLL 374
++ V GA + +RK V LL
Sbjct: 290 AISVLSVGATTGVKNRKLVEQLL 312
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 124/294 (42%), Gaps = 36/294 (12%)
Query: 72 VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDA 131
VVGS N D+ +D LP+ GETV A + GGKGANQA A+ F G G+D
Sbjct: 24 VVGSVNMDLTFVVDALPRPGETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDP 83
Query: 132 NGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFG 191
+ L V LD V P+G A++++ + +N++++ G N P
Sbjct: 84 AAAQLRAHLRANAVGLDRTVTVPG---PSGTAIIVVDASAENTVLVAPGANAHLTPVP-- 138
Query: 192 DEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA--GGMDAPIPQELLNFID 249
V ++L Q EIP + + A+AA+SA V+ +A G D Q+L D
Sbjct: 139 ----SAVANCDVLLTQLEIPVATALAAARAAQSADAVVMVNASPAGQDRSSLQDLAAIAD 194
Query: 250 ILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQS 309
++ NE E PT ++ LG +G A +V G + +
Sbjct: 195 VVIANEHEANDWPSPPT-------------------HFVITLGVRG-ARYV-GADGVFEV 233
Query: 310 IIPAARVIDTTGAGDTFTASFAVGFVEGK----SREECLRFAAAAASLCVQVKG 359
P +DT GAGD F A + R LR A AA +L V G
Sbjct: 234 PAPTVTPVDTAGAGDVFAGVLAANWPRNPGSPAERLRALRRACAAGALATLVSG 287
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 127/319 (39%), Gaps = 41/319 (12%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
+ VG D +++ P+ ++ +++ GG AN A KL + + VG
Sbjct: 8 ITCVGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCVGY 67
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT---NMSCW 186
D L + + + ++ P A + D + G
Sbjct: 68 DFKNSGYERYLKNLDINISKLYYSEEEETPK--AWIFTDKDNNQITFFLWGAAKHYKELN 125
Query: 187 PEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQ---- 242
P F E IV + P+ N++ AK A + V FD G +PQ
Sbjct: 126 PPNFNTE---------IVHIATGDPE-FNLKCAKKAYGNNL-VSFDPG---QDLPQYSKE 171
Query: 243 ---ELLNFIDILSPNESELGR---LTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGS 296
E++ + L N+ E R L D Y + +A++ V G+KGS
Sbjct: 172 MLLEIIEHTNFLFMNKHEFERASNLLNFEIDDYLERVDALI-----------VTKGSKGS 220
Query: 297 ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQ 356
++ + +K I+ I A +VID TGAGD++ A F +V+G E+C AA AS V+
Sbjct: 221 VIYTK-DKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGLIGAATASFVVE 279
Query: 357 VKGAIPSMPDRKSVLNLLQ 375
KG ++P V+ L+
Sbjct: 280 AKGCQTNLPTWDKVVERLE 298
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 21/279 (7%)
Query: 83 EIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSG 142
+++R+ +V +T AGGKG N A++ P G +G + G+ I L
Sbjct: 44 DVNRVQEVSKT---------AGGKGLNVTRVLAQVGEPVLASGFIGGEL-GQFIAKKLDH 93
Query: 143 CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAG 202
++ + N+ + T + + +L Q I+ G + F ++++K
Sbjct: 94 ADIKHAFYNIKGE----TRNCIAILHEGQQTEILEQGPEIDNQEAAGFIKHFEQLLEKVE 149
Query: 203 IVLLQREIPDSVN----IQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESEL 258
V + +P +N Q+ + ++ GVPVI D G E ++ PN SEL
Sbjct: 150 AVAISGSLPKGLNQDYYAQIIERCQNKGVPVILDCSGATLQTVLENPYKPTVIKPNISEL 209
Query: 259 GRLTGMPTD-SYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVI 317
+L P D S E + +AV + G++ ++V LGA+G+ F + + IP V+
Sbjct: 210 YQLLNQPLDESLESLKQAVSQPLFEGIEWIIVSLGAQGA--FAKHNHTFYRVNIPTISVL 267
Query: 318 DTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQ 356
+ G+GD+ A + ++ + L+ A L Q
Sbjct: 268 NPVGSGDSTVAGITSAILNHENDHDLLKKANTLGXLNAQ 306
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 24/272 (8%)
Query: 103 AGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH 162
+GG N AA A L + G+V +D G++ T + GV + DG PT
Sbjct: 59 SGGSAGNTAAGVASLGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPL--DGHPPTAR 116
Query: 163 AVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI--PDSVNIQVAK 220
+ + + DG+ S G + PE D+ VV ++ + + + P + +
Sbjct: 117 SXIFVTEDGERSXNTYLGACVELGPEDVEDD---VVAQSKVTYFEGYLWDPPRAKDAIRE 173
Query: 221 AARSAGVPVIFDAGGMDAPI-----PQELLNF-----IDILSPNESELGRLTGMPTDSYE 270
AAR A A + E L +DI+ N E L T+ ++
Sbjct: 174 AARIAHAHGRETAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEA--LALYETEDFD 231
Query: 271 QISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASF 330
+ E + + K+ V L +GS + V G + ++ +V+DTTGAGD + A F
Sbjct: 232 RALELLARDCKLAA----VTLSEEGSVV-VRGAERVRVGASVLEQVVDTTGAGDLYAAGF 286
Query: 331 AVGFVEGKSREECLRFAAAAASLCVQVKGAIP 362
G+ G+S EEC + AA + + G P
Sbjct: 287 LFGYTSGRSLEECSKLGNLAAGIVIGQIGPRP 318
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 28/274 (10%)
Query: 103 AGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH 162
+GG N AA A L + G V D G + T + GV Y K PT
Sbjct: 79 SGGSAGNTAAGVANLGGKAAYFGNVAADQLGDIFTHDIRAQGVH--YQTKPKGAFPPTAR 136
Query: 163 AVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPD-----SVNIQ 217
+ + + DG+ S G + PE D + +VV A + + + D +
Sbjct: 137 SXIFVTEDGERSXNTYLGACVELGPE---DVEADVVADAKVTYFEGYLWDPPRAKEAILD 193
Query: 218 VAKAARSAGVP---VIFDAGGMDAPIPQELLNF-----IDILSPNESELGRLTGMPTDSY 269
A+ A G + D+ +D E L+ +DI+ N E L+ TD +
Sbjct: 194 CARIAHQHGREXSXTLSDSFCVD-RYRGEFLDLXRSGKVDIVFANRQEA--LSLYQTDDF 250
Query: 270 EQ-ISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTA 328
E+ ++ C V ++ A+ ++G + + I V+DTTGAGD F +
Sbjct: 251 EEALNRIAADCKIAAVTX------SENGAVILKGRERYYVNAIRIREVVDTTGAGDLFAS 304
Query: 329 SFAVGFVEGKSREECLRFAAAAASLCVQVKGAIP 362
F G+ +G+S E+C + AA + +Q G P
Sbjct: 305 GFLYGYTQGRSLEDCGKLGCLAAGIVIQQIGPRP 338
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 119/279 (42%), Gaps = 21/279 (7%)
Query: 83 EIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSG 142
+++R+ +V +T AGGKG N A++ P G +G + G+ I L
Sbjct: 44 DVNRVQEVSKT---------AGGKGLNVTRVLAQVGEPVLASGFIGGEL-GQFIAKKLDH 93
Query: 143 CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAG 202
++ + N+ + T + + +L Q I+ G + F + +K
Sbjct: 94 ADIKHAFYNIKGE----TRNCIAILHEGQQTEILEQGPEIDNQEAAGFIKHFEQXXEKVE 149
Query: 203 IVLLQREIPDSVN----IQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESEL 258
V + +P +N Q+ + ++ GVPVI D G E ++ PN SEL
Sbjct: 150 AVAISGSLPKGLNQDYYAQIIERCQNKGVPVILDCSGATLQTVLENPYKPTVIKPNISEL 209
Query: 259 GRLTGMPTD-SYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVI 317
+L P D S E + +AV + G++ ++V LGA+G+ F + + IP V+
Sbjct: 210 YQLLNQPLDESLESLKQAVSQPLFEGIEWIIVSLGAQGA--FAKHNHTFYRVNIPTISVL 267
Query: 318 DTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQ 356
+ G+GD+ A + ++ + L+ A L Q
Sbjct: 268 NPVGSGDSTVAGITSAILNHENDHDLLKKANTLGXLNAQ 306
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 128/295 (43%), Gaps = 53/295 (17%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN A ++L + ++G DA G + D L G ++ DG
Sbjct: 54 GGSPANIAVNLSRLGKKVALISRLGADAFGNYLLDVLKG-------EQIITDG------- 99
Query: 164 VVMLQSDGQNSIIIV---GGTNMSCW-PEKFGD----ED---LEVVKKAGIV-----LLQ 207
+Q D + IV T W P + D ED E++K++ + +L
Sbjct: 100 ---IQQDKERRTTIVYVSKSTRTPDWLPYREADXYLQEDDIIFELIKRSKVFHLSTFILS 156
Query: 208 REIPDSVNIQVAKAARSAGVPVIFD---------AGGMDAPIPQELLNFIDILSPNESEL 258
R+ I+ AR G V FD G A + +E+++ D + P+ +
Sbjct: 157 RKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDA 216
Query: 259 GRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPA--ARV 316
L G DS E V + ++GV+ V++ LG +G + +GE+ I+ IPA
Sbjct: 217 RHLFG--PDSPENY---VKRYLELGVKAVILTLGEEG-VIASDGEEIIR---IPAFSEDA 267
Query: 317 IDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVL 371
+D TGAGD F + F G ++G + + ++ A+ ++ GA+ +P ++ ++
Sbjct: 268 VDVTGAGDAFWSGFICGLLDGYTVKRSIKLGNGVAAFKIRGVGALSPVPSKEDII 322
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 115/284 (40%), Gaps = 37/284 (13%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN C A+L F+G +G+D G+ + GV + ++ + D + +
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL--DADLTSAVL 107
Query: 164 VVMLQSDGQNSI--IIVGGTNMSCWPEKFGD-EDLEVVKKAGIVLLQREIPDSVNIQVAK 220
+V L +DG+ S ++ G + P+ E + I L R ++ ++ A+
Sbjct: 108 IVNLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREAC-LEGAR 166
Query: 221 AARSAGVPVIFDAG------GMDAPIPQELLN---FIDILSPNESELGRLTGMPTDSYEQ 271
R AG V+FD G IP+ + I + EL +L+G
Sbjct: 167 RMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGA-----SH 221
Query: 272 ISEAVVKCHKMGVQQVLVKLGAKGSALFV-EGEKPIKQSIIPAARVIDTTGAGDTFTASF 330
+A +G ++ LGA G+ L EGE P V+DTTGAGD F
Sbjct: 222 WQDARYYLRDLGCDTTIISLGADGALLITAEGEFHFPA---PRVDVVDTTGAGDAFVG-- 276
Query: 331 AVGFVEGKSREECLRFAA---------AAASLCVQVKGAIPSMP 365
G + SR C A A ++ V KGA+ ++P
Sbjct: 277 --GLLFTLSRANCWDHALLAEAISNANACGAMAVTAKGAMTALP 318
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 116/269 (43%), Gaps = 49/269 (18%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETV-AAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVG 128
+ V G+ D I +PK G ++ K SQ + GGKGANQA ++ T + G
Sbjct: 5 VYVTGNITVDETWSIPDIPKKGASIHGVKVSQDI-GGKGANQAIILSRCGIETRLIAATG 63
Query: 129 EDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH-------AVVMLQSDGQNSIIIVGGT 181
D+NG I + + L +P GH ++++ +DG N+II
Sbjct: 64 NDSNGAWIRQQIKNEPLXL----------LPDGHFNQHSDTSIILNSADGDNAIITTTAA 113
Query: 182 NMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKA----ARSAGVPVIFDAGGMD 237
+ ++ + V AG +LLQ+ + ++ +A ARS G +F+ ++
Sbjct: 114 ADTFSLDEXIPHXADAV--AGDILLQQ---GNFSLDKTRALFQYARSRGXTTVFNPSPVN 168
Query: 238 APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSA 297
P L IDI NESE L GV+ +++ GA G+
Sbjct: 169 -PDFCHLWPLIDIAVVNESEAELL------------------QPYGVKTLVITQGAAGAW 209
Query: 298 LFVEGEKPIKQSIIPAARVIDTTGAGDTF 326
L EG++ ++ A +DTTGAGDTF
Sbjct: 210 LVQEGQRQFCPAV--PAEALDTTGAGDTF 236
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 115/284 (40%), Gaps = 37/284 (13%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN C A+L F+G +G+D G+ + GV + ++ + D + +
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL--DADLTSAVL 107
Query: 164 VVMLQSDGQNSI--IIVGGTNMSCWPEKFGD-EDLEVVKKAGIVLLQREIPDSVNIQVAK 220
+V L +DG+ S ++ G + P+ E + I L R ++ ++ A+
Sbjct: 108 IVNLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREAC-LEGAR 166
Query: 221 AARSAGVPVIFDAG------GMDAPIPQELLN---FIDILSPNESELGRLTGMPTDSYEQ 271
R AG V+FD G IP+ + I + EL +L+G
Sbjct: 167 RXREAGGYVLFDVNLRSKXWGNTDEIPELIARSAALASICKVSADELCQLSGA-----SH 221
Query: 272 ISEAVVKCHKMGVQQVLVKLGAKGSALFV-EGEKPIKQSIIPAARVIDTTGAGDTFTASF 330
+A +G ++ LGA G+ L EGE P V+DTTGAGD F
Sbjct: 222 WQDARYYLRDLGCDTTIISLGADGALLITAEGEFHFPA---PRVDVVDTTGAGDAFVG-- 276
Query: 331 AVGFVEGKSREECLRFAAAA-----ASLC----VQVKGAIPSMP 365
G + SR C A A A+ C V KGA ++P
Sbjct: 277 --GLLFTLSRANCWDHALLAEAISNANACGAXAVTAKGAXTALP 318
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 120/289 (41%), Gaps = 28/289 (9%)
Query: 100 QTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVP 159
+ GG N A A+L FVG+VGED G ++ + L GV L + + G
Sbjct: 29 EVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFR--RAPGF- 85
Query: 160 TGHAVVMLQSDGQNSIIIV--GGTNMSCWPEKFGDEDLEVVK---KAGIVLLQREIPDSV 214
TG + GQ + G + P F + LE V+ +GI +
Sbjct: 86 TGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAF 145
Query: 215 NIQVAKAARSAGVPVIFDAGGMDAPI-PQELLNF-------IDILSPNESELGRLTGMPT 266
++ + A+ GV V D P+E F +D+L +E E L G
Sbjct: 146 SLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFG--- 202
Query: 267 DSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTF 326
++ EA+ + +V++K GAKG+ FV+G + ++ S A +D GAGD F
Sbjct: 203 ----RVEEAL---RALSAPEVVLKRGAKGAWAFVDGRR-VEGSAF-AVEAVDPVGAGDAF 253
Query: 327 TASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375
A + G V G EE LR A + +G P R+ + LL+
Sbjct: 254 AAGYLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLK 302
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 11/265 (4%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG N A A++ T F +G D +GK I + G D V++ G PT
Sbjct: 42 GGVCRNIAENXARVGVNTNFXSILGNDEHGKSIVEHSKKIGYHXDDSXVIEGGSTPT--Y 99
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAAR 223
+ +L +G+ I ++ F D E+ + A +L + P+ + + K +
Sbjct: 100 LAILDENGEXVSAIADXKSIGAXNTDFIDSKREIFENAEYTVLDSDNPE-IXEYLLKNFK 158
Query: 224 SAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMG 283
++ A + L+ + PN E L G P + + +A +G
Sbjct: 159 DKTNFILDPVSAEKASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGLG 218
Query: 284 VQQVLVKLGAKGSALFVEGEK--PIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSRE 341
+++V + L A G + +G IK + + V TGAGD+F A G+ E
Sbjct: 219 IKKVFISLDADG-IFYNDGVSCGKIKATEVDVKNV---TGAGDSFVAGLGYGYXNKXPIE 274
Query: 342 ECLRFAAAAASLCVQVKGAIPSMPD 366
+ ++FA +++ + + I PD
Sbjct: 275 DIVKFAXTXSNITISHEETI--HPD 297
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 141/323 (43%), Gaps = 29/323 (8%)
Query: 70 LVVVGSANFDI-YVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVG 128
L+ +G A D+ VE +R + T GG AN +KL F+G++
Sbjct: 14 LIAIGRACIDLNAVEYNRPXE-----ETXTFSKYVGGSPANIVIGSSKLGLKAGFIGKIA 68
Query: 129 EDANGKLITDALSGCGVRLDYMNVVKD-GGVPTGHAVVMLQSDGQNSIIIVGG--TNMSC 185
+D +G+ I G GV D N+V D G TG A ++S + SI+ ++
Sbjct: 69 DDQHGRFIESYXRGVGV--DTSNLVVDQEGHKTGLAFTEIKSPEECSILXYRQDVADLYL 126
Query: 186 WPEKFGDEDLEVVKKAGIVL-----LQREIPDSVNIQVAKAARSAGVPVIF--DAGGMDA 238
PE+ + ++++ ++L L + ++ + A+ V V+F D
Sbjct: 127 SPEEVNEA---YIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSW 183
Query: 239 PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISE------AVVKCHKMGVQQVLVKLG 292
P+E + +++ +S++ T D E +E + K + +++K G
Sbjct: 184 ETPEETAVYYSLVA-EQSDIVIGTREEFDVLENRTEKGDNDETIRYLFKHSPELIVIKHG 242
Query: 293 AKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAAS 352
+GS + + + + +V+ T GAGD++ ++F + GK E L++ +A+AS
Sbjct: 243 VEGSFAYTKAGEAYR-GYAYKTKVLKTFGAGDSYASAFLYALISGKGIETALKYGSASAS 301
Query: 353 LCVQVKGAIPSMPDRKSVLNLLQ 375
+ V + + P + + L++
Sbjct: 302 IVVSKHSSSDAXPSVEEIEALIE 324
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 113/299 (37%), Gaps = 36/299 (12%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG D+ +D+ PK + + + GG +N + L P F+G +
Sbjct: 6 ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSMAP 65
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
+ D L V L Y G VP V++ ++ G +I+ +
Sbjct: 66 GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIA-TVIINEASGSRTILYYDRSLPDVSATD 124
Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249
F DL K ++I+ A+ + DA P Q++ ++
Sbjct: 125 FEKVDLTQFK-------------WIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVE 171
Query: 250 ILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGA------KGSALFV--- 300
+ P E EL +L G + +S+ V K +G Q L KG+ L
Sbjct: 172 VEKPRE-ELFQLFGYGDVVF--VSKDVAK--HLGFQSAEEALRGLYGRVRKGAVLVCAWA 226
Query: 301 -EGE-------KPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAA 351
EG K + P RV+DT GAGDTF AS +G+S +E LRF A
Sbjct: 227 EEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 285
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 106/255 (41%), Gaps = 19/255 (7%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GGKG N + +L H T +G +G G + +AL + L ++ V G
Sbjct: 36 GGKGINVSRVLKRLGHETKALGFLG-GFTGAYVRNALEKEEIGLSFIEV-------EGDT 87
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGD--EDLEVVKKAGIVLLQREIPDSVNIQVAKA 221
+ ++ G+ + GT E E L ++K +++L +P + + ++
Sbjct: 88 RINVKIKGKQETEL-NGTAPLIKKEHVQALLEQLTELEKGDVLVLAGSVPQAXPQTIYRS 146
Query: 222 ----ARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVV 277
A+ G V D G + + L + PN EL L P S E V
Sbjct: 147 XTQIAKERGAFVAVDTSG--EALHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIPHVQ 204
Query: 278 KCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG 337
+ G++ +LV G ALF E ++ P+ V ++ GAGD+ A F EG
Sbjct: 205 RLIGEGIESILVSFAGDG-ALFASAEGXFHVNV-PSGEVRNSVGAGDSVVAGFLAALQEG 262
Query: 338 KSREECLRFAAAAAS 352
KS E+ + FA AA S
Sbjct: 263 KSLEDAVPFAVAAGS 277
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 110/299 (36%), Gaps = 36/299 (12%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG D+ +D+ PK + + + GG +N + L P F G
Sbjct: 20 ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFXGSXAP 79
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
+ D L V L Y G VP V++ ++ G +I+ +
Sbjct: 80 GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIA-TVIINEASGSRTILYYDRSLPDVSATD 138
Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249
F DL K ++I+ A+ DA P Q++ ++
Sbjct: 139 FEKVDLTQFK-------------WIHIEGRNASEQVKXLQRIDAHNTRQPPEQKIRVSVE 185
Query: 250 ILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGA------KGSALFV--- 300
+ P E EL +L G + +S+ V K +G Q L KG+ L
Sbjct: 186 VEKPRE-ELFQLFGYGDVVF--VSKDVAK--HLGFQSAEEALRGLYGRVRKGAVLVCAWA 240
Query: 301 -EGE-------KPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAA 351
EG K + P RV+DT GAGDTF AS +G+S +E LRF A
Sbjct: 241 EEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 299
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 274 EAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSI-IPAARVIDTTGAGDTFTASFAV 332
EA K ++GV+ +L KLG+KG+ + + K K + +P V D TGAGD +F
Sbjct: 210 EAYRKYKELGVKVLLYKLGSKGAIAYKDNVKAFKDAYKVP---VEDPTGAGDAMAGTFVS 266
Query: 333 GFVEGKSREECLRFAAAAASLCVQVKG---AIPSMPDRKSVLN 372
+++GK E L AA++L + V+G P++ D + LN
Sbjct: 267 LYLQGKDIEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLN 309
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 121/263 (46%), Gaps = 25/263 (9%)
Query: 96 AKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKD 155
A + AGGKG N + L + +G G GK I D L+ ++ +++ V +D
Sbjct: 28 ATATYKFAGGKGINVSRVLKTLDVESTALGFAG-GFPGKFIIDTLNNSAIQSNFIEVDED 86
Query: 156 GGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSV- 214
+ V L++ GQ + I G +++ + + ++ IV++ +P S+
Sbjct: 87 TRIN-----VKLKT-GQETEINAPGPHITSTQFEQLLQQIKNTTSEDIVIVAGSVPSSIP 140
Query: 215 ---NIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDI-LSPNESELGRLTGMPTDSYE 270
Q+A+ G ++ DA + + + +L + + + PN+ EL + +S
Sbjct: 141 SDAYAQIAQITAQTGAKLVVDA---EKELAESVLPYHPLFIKPNKDELEVMFNTTVNS-- 195
Query: 271 QISEAVVKCHKM----GVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTF 326
V+K ++ G Q V+V LG G A++++ E IK ++ P +V++T G+GD+
Sbjct: 196 --DADVIKYGRLLVDKGAQSVIVSLGGDG-AIYIDKEISIK-AVNPQGKVVNTVGSGDST 251
Query: 327 TASFAVGFVEGKSREECLRFAAA 349
A G G S E+ + A A
Sbjct: 252 VAGMVAGIASGLSIEKAFQQAVA 274
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 272 ISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSII--PAARVIDTTGAGDTFTAS 329
+ + + + H GV++V+VK GA + + GE + + P +VIDTT AGD+F+A
Sbjct: 212 VEDVIARTHNAGVKEVVVKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAG 271
Query: 330 FAVGFVEGKSREECLRFAAAAASLCVQVKGAI 361
+ + G S E + AS +Q +GAI
Sbjct: 272 YLAVRLTGGSAENAAKRGHLTASTVIQYRGAI 303
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 8/193 (4%)
Query: 165 VMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNI----QVAK 220
V +++ G+ ++ G ++ + +E + ++ I+++ +P V + Q+
Sbjct: 95 VHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLIS 154
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280
AA+ G+ I D+ G +A + I+++ PN+ EL L + + +A +
Sbjct: 155 AAQKQGIRCIVDSSG-EALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIV 213
Query: 281 KMG-VQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKS 339
G ++V+V LG +G AL V+ E I Q + P + T GAGD+ + + E S
Sbjct: 214 NSGKAKRVVVSLGPQG-ALGVDSENCI-QVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS 271
Query: 340 REECLRFAAAAAS 352
EE +RF AA S
Sbjct: 272 LEEMVRFGVAAGS 284
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 8/193 (4%)
Query: 165 VMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNI----QVAK 220
V +++ G+ ++ G ++ + +E + ++ I+++ +P V + Q+
Sbjct: 95 VHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLIS 154
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280
AA+ G+ I D+ G +A + I+++ PN+ EL L + + +A +
Sbjct: 155 AAQKQGIRCIVDSSG-EALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIV 213
Query: 281 KMG-VQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKS 339
G ++V+V LG +G AL V+ E I Q + P + T GAGD+ + + E S
Sbjct: 214 NSGKAKRVVVSLGPQG-ALGVDSENCI-QVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS 271
Query: 340 REECLRFAAAAAS 352
EE +RF AA S
Sbjct: 272 LEEMVRFGVAAGS 284
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 110/275 (40%), Gaps = 23/275 (8%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN A ++ + V VG D G I + ++ N ++ PTG
Sbjct: 24 GGAPANFAYHVSQFGFDSRVVSAVGNDELGDEIXEVFKEKQLK----NQIERVDYPTGTV 79
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGDE--DLEVVKKA---GIVLLQREIPD-SVNIQ 217
V L +G I G P F DE L + +A G + + E+ ++N
Sbjct: 80 QVTLDDEGVPCYEIKEGVAWDNIP--FTDELKRLALNTRAVCFGSLAQRNEVSRATINRF 137
Query: 218 VAKAARSAGVPVIFDAGGMDAPIPQELLN----FIDILSPNESEL---GRLTGMPTDSYE 270
+ G IFD +E+L +IL N+ EL R G P +
Sbjct: 138 LDTXPDIDGQLKIFDINLRQDFYTKEVLRESFKRCNILKINDEELVTISRXFGYPGIDLQ 197
Query: 271 QISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASF 330
+ + K ++ +++ G GS +F G +++ P V DT GAGD+FTA+F
Sbjct: 198 --DKCWILLAKYNLKXLILTCGINGSYVFTPGVVSFQET--PKVPVADTVGAGDSFTAAF 253
Query: 331 AVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMP 365
+ GKS E + A ++ GA P +P
Sbjct: 254 CASILNGKSVPEAHKLAVEVSAYVCTQSGAXPELP 288
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 122/292 (41%), Gaps = 39/292 (13%)
Query: 105 GKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTG--- 161
G AN K + + +VG+D G + L G GV + +M + D PTG
Sbjct: 34 GSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKI--DPSAPTGIFF 91
Query: 162 ---HAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQV 218
H V L+S+ G+ +S PE D D E VK A +V + + +
Sbjct: 92 IQRHYPVPLKSESIYYRKGSAGSKLS--PE---DVDEEYVKSADLVH-----SSGITLAI 141
Query: 219 AKAARSAGVPVIFDAGG---MDAPIPQELLN-------FIDILSPNESELGRLTGMPTDS 268
+ A+ A V F+ D I +L + + +LS + L L DS
Sbjct: 142 SSTAKEA-VYKAFEIASNRSFDTNIRLKLWSAEEAKREILKLLS--KFHLKFLITDTDDS 198
Query: 269 Y----EQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSI-IPAARVIDTTGAG 323
E + K + +++KLG KG+ ++ +G+K +P V D TGAG
Sbjct: 199 KIILGESDPDKAAKAFSDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQVP---VEDVTGAG 255
Query: 324 DTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375
D +F + +G E+ L +A A++L V ++G ++P K + L+
Sbjct: 256 DALGGTFLSLYYKGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLR 307
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 112/299 (37%), Gaps = 36/299 (12%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG D+ +D+ PK + + + GG +N + L P F+G +
Sbjct: 6 ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSMAP 65
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
+ GV + + G P+ ++ S+G +I++ +
Sbjct: 66 GHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCCIIN-NSNGNRTIVLHDTSLPDVSATD 124
Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249
F DL K ++I+ A+ + DA P Q++ ++
Sbjct: 125 FEKVDLTQFK-------------WIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVE 171
Query: 250 ILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGA------KGSALFV--- 300
+ P E EL +L G + +S+ V K +G Q L KG+ L
Sbjct: 172 VEKPRE-ELFQLFGYGDVVF--VSKDVAK--HLGFQSAEEALRGLYGRVRKGAVLVCAWA 226
Query: 301 -EGE-------KPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAA 351
EG K + P RV+DT GAGDTF AS +G+S +E LRF A
Sbjct: 227 EEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 285
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 112/299 (37%), Gaps = 36/299 (12%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG D+ +D+ PK + + + GG +N + L P F+G +
Sbjct: 21 ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSMAP 80
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
+ GV + + G P+ ++ S+G +I++ +
Sbjct: 81 GHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCCIIN-NSNGNRTIVLHDTSLPDVSATD 139
Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249
F DL K ++I+ A+ + DA P Q++ ++
Sbjct: 140 FEKVDLTQFK-------------WIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVE 186
Query: 250 ILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGA------KGSALFV--- 300
+ P E EL +L G + +S+ V K +G Q L KG+ L
Sbjct: 187 VEKPRE-ELFQLFGYGDVVF--VSKDVAK--HLGFQSAEEALRGLYGRVRKGAVLVCAWA 241
Query: 301 -EGE-------KPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAA 351
EG K + P RV+DT GAGDTF AS +G+S +E LRF A
Sbjct: 242 EEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 300
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 116/312 (37%), Gaps = 36/312 (11%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG+A D + PK V +A G ++ A + G VG+
Sbjct: 32 VLCVGAAVLDTLFRVADXPKGEGKVLPYEVLQIAEGXASSAAYAVHRXGGRASLWGAVGD 91
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNM-----S 184
D G I LS G+ V G + + +++ + G+ I+ + +
Sbjct: 92 DETGTRILRDLSESGIDTSGXTVAP--GARSALSTIIIDNRGERLIVPFYDHRLHEKKRA 149
Query: 185 CWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQEL 244
C PE D VL+ P+ + + V AR+ G P I D G AP+
Sbjct: 150 CTPEDIALFD--------AVLVDVRWPE-LALDVLTVARALGKPAILD--GDVAPV---- 194
Query: 245 LNFIDILSP-------NESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSA 297
++ L+P +E RLTG+ E + + + H Q +
Sbjct: 195 -ETLEGLAPAATHIVFSEPAATRLTGL-----ETVKDXLPVLHARYPQTFIAVTAGPAGC 248
Query: 298 LFVEGEKP-IKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQ 356
+ E + P + +DT AGD F +FA+ EG +R ++ AA+L
Sbjct: 249 WWTEADDPTVHFQTTXQVEAVDTLAAGDIFHGTFALAXAEGXQSRAAVRLSSVAAALKCT 308
Query: 357 VKGAIPSMPDRK 368
V G P R+
Sbjct: 309 VFGGRIGAPTRE 320
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 126/309 (40%), Gaps = 35/309 (11%)
Query: 77 NFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAK-LSHP--TYFVGQVGEDANG 133
N I E +P E + ++ +AGG N L P F G VG+D
Sbjct: 53 NNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYA 112
Query: 134 KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKF-GD 192
+++ + + GV + Y + PTG V++ + Q S+ PE D
Sbjct: 113 RILEERATSNGVNVQYQ---RSATSPTGTCAVLV-TGTQRSLCANLAAANDFTPEHLRSD 168
Query: 193 EDLEVVKKAGIVLLQ---REIPDSVNIQVAKAARSAGVPVIFDAGGMDAP-IPQ------ 242
+ ++ A + + + VAK A + G + + + AP +PQ
Sbjct: 169 GNRAYLQGAQFFYVSGFFFTVSFESALSVAKEAAATGRMFMMN---LSAPFVPQFYKNNL 225
Query: 243 -ELLNFIDILSPNESE---LGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGS-- 296
E+ ++D+L NE+E L + T+ +I + + K ++ + + +GS
Sbjct: 226 EEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDP 285
Query: 297 ALFVEG------EKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAA 350
L +E E P+ Q + P +++DT GAGD F F ++ ++ + C++ A
Sbjct: 286 VLLIEAGTDNVREFPV-QKLAPE-QMVDTNGAGDAFVGGFLAQLLQSRTVDVCIKCGIWA 343
Query: 351 ASLCVQVKG 359
A +Q G
Sbjct: 344 AREIIQRSG 352
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 120/305 (39%), Gaps = 44/305 (14%)
Query: 103 AGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH 162
AGG AN A A+L FVG +G D G + D+ + GV D +V+ T
Sbjct: 35 AGGAPANVAVAVARLGGAVQFVGXLGSDXFGDFLFDSFAEAGVVTD--GIVRTSTAKTAL 92
Query: 163 AVVMLQSDGQNSIIIVG--GTNMSCWPEKFGD---EDLEVVKKAGIVLLQREIPDSVNIQ 217
A V L + G+ S ++ E F D D + +I + V +
Sbjct: 93 AFVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIFHACSNSXTDADIAE-VTFE 151
Query: 218 VAKAARSAGVPVIFDAGGMDAPIPQ---------ELLNFIDILSPNESELGRLTGMPTDS 268
+ A++AG V FD P + L+ D++ + EL L ++
Sbjct: 152 GXRRAQAAGAIVSFDLNFRPXLWPNGENPASRLWKGLSLADVVKLSSEELDYL----ANT 207
Query: 269 YEQISEAVVKCHKMGVQQVLVKLGAKGSALFVE----GEKPIKQSIIPAARVIDTTGAGD 324
+ AV++ G Q+L+ A G + GE P + +V D+ AGD
Sbjct: 208 LAADANAVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGGEVPTFR-----VQVQDSNAAGD 262
Query: 325 TFTA----SFAVGFVEG----------KSREECLRFAAAAASLCVQVKGAIPSMPDRKSV 370
F +FA F + +S LRFAAA +L V +GA + P V
Sbjct: 263 AFVGGXLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGAFTAXPXLSEV 322
Query: 371 LNLLQ 375
L+L+Q
Sbjct: 323 LSLIQ 327
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 107/267 (40%), Gaps = 32/267 (11%)
Query: 123 FVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTN 182
F G +G D G+++ + V Y + PTG + D ++ I + N
Sbjct: 86 FFGCIGIDKFGEILKRKAAEAHVDAHYY---EQNEQPTGTCAACITGDNRSLIANLAAAN 142
Query: 183 MSCWP-EKFGD--EDLEVVKKAGIVLLQREI----PDSVNIQVAKAARSAGVPVIFDAGG 235
C+ EK D ++ +V+KA + + P+SV ++VA A +
Sbjct: 143 --CYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESV-LKVAHHASENNRIFTLN--- 196
Query: 236 MDAPIPQELLN--------FIDILSPNESE---LGRLTGMPTDSYEQISEAVVKCHKMGV 284
+ AP + ++DIL NE+E R G T ++I++ KM
Sbjct: 197 LSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNS 256
Query: 285 QQ---VLVKLGAKGSALFVEGEKPIKQSIIPAAR-VIDTTGAGDTFTASFAVGFVEGKSR 340
++ V+ G + + E E + + +IDT GAGD F F V K
Sbjct: 257 KRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGFLSQLVSDKPL 316
Query: 341 EECLRFAAAAASLCVQVKG-AIPSMPD 366
EC+R AAS+ ++ G P PD
Sbjct: 317 TECIRAGHYAASIIIRRTGCTFPEKPD 343
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 242 QELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK-MGVQQVLVKLGAKGSALFV 300
+L D + P E LTG E E V + ++ +G + V+VKLGA+G+ +
Sbjct: 209 NDLATRADWVLPGXEEGRFLTG------ETTPEGVARFYRQLGAKLVVVKLGAEGA--YF 260
Query: 301 EGEKPI-KQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKG 359
+GE + + P A V+DT GAGD F ++G E ++ A + VQV G
Sbjct: 261 DGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGLGVPEAVKRGAWIGARAVQVLG 320
Query: 360 AIPSMPDRKSV 370
+P R +
Sbjct: 321 DSEGLPTRAEL 331
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 116/279 (41%), Gaps = 18/279 (6%)
Query: 103 AGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH 162
AGG G N A ++L + G D G+++ +A GV D D P+
Sbjct: 38 AGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQAGVE-DTPFTFLDRRTPSYT 96
Query: 163 AVVMLQSDGQNSIIIVGGTNMSCW----PEKFGDEDL-EVVKKAGIVLLQREIPDSVNIQ 217
A+ L+ DG +++ +M + P + + E + + +L +P+
Sbjct: 97 AI--LERDGN---LVIALADMDLYKLFTPRRLKVRAVREAIIASDFLLCDANLPEDTLTA 151
Query: 218 VAKAARSAGVPVIFDA-GGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAV 276
+ AR+ P+ A A + L IDIL NE+E LTG ++ E + +
Sbjct: 152 LGLIARACEKPLAAIAISPAKAVKLKAALGDIDILFMNEAEARALTG---ETAENVRDWP 208
Query: 277 VKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAAR-VIDTTGAGDTFTASFAVGFV 335
K G+ +V GA F EK I P R V D TGAGD + +
Sbjct: 209 NILRKAGLSGGVVTRGASEVVAFNGTEKAILHP--PLIREVKDVTGAGDAMASGYLAAIA 266
Query: 336 EGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLL 374
EGK+ E LR AAAA++ VQ A + SV +L
Sbjct: 267 EGKTIREALRQGAAAAAITVQSSFATSQDLSKDSVEAML 305
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 25/258 (9%)
Query: 116 KLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSI 175
+L P + VG D G + L+ GV + ++V+ TG A V + G
Sbjct: 49 RLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEA--TGSAFVTYHNSGDRDF 106
Query: 176 IIVGGTNMSCWPEKFGDEDLEVVKK------AGIVLLQREIPDSVNIQVAKAARSAGVPV 229
I N +C D ++K G L D+V V + GV +
Sbjct: 107 IF-NIKNAACGKLSAQHVDENILKDCTHFHIXGSSLFSFHXVDAVKKAVTIVKANGGV-I 164
Query: 230 IFDAG----GMDAPIPQELLNFI----DILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281
FD +D P ++ L+F+ DI P+E E+ L+ P + E+ A+ +
Sbjct: 165 SFDPNIRKEXLDIPEXRDALHFVLELTDIYXPSEGEVLLLS--PHSTPER---AIAGFLE 219
Query: 282 MGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSRE 341
GV++V+VK G +G++ + E+ +S P V D TGAGD F ++ G
Sbjct: 220 EGVKEVIVKRGNQGASYYSANEQFHVESY-PVEEV-DPTGAGDCFGGAWIACRQLGFDAH 277
Query: 342 ECLRFAAAAASLCVQVKG 359
L++A A +L V +G
Sbjct: 278 RALQYANACGALAVTRRG 295
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 108/286 (37%), Gaps = 57/286 (19%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
L G N D+ + +D +P+ G +V K + GG N A K P VG
Sbjct: 23 LAYFGHLNIDVLISVDSIPREG-SVNVKDLRPRFGGTAGNFAIVAQKFRIPFDLYSAVGX 81
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA---------VVMLQSDGQNSIIIVGG 180
+ +Y+ ++ G+ TGH + + +DG+ +
Sbjct: 82 KTH--------------REYLAXIESXGINTGHVEKFEDESGPICYIATDGKKQVSFXHQ 127
Query: 181 TNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPI 240
+ W + DE V G P+ ++ AK+ RS +IFD
Sbjct: 128 GAXAAWAPQLADEYEYVHFSTG--------PNYLD--XAKSIRSK---IIFDPS------ 168
Query: 241 PQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQ----VLVKLGAKGS 296
QE+ + ++ EL + + S E V G+ +V G +GS
Sbjct: 169 -QEIHKY------SKDELKKFHEISYXSIFNDHEYRVFREXTGLSSPKVTTIVTNGERGS 221
Query: 297 ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREE 342
+LF +G+K IP++ DT GAGD+F A + +S E+
Sbjct: 222 SLFXDGKK-YDFPAIPSSG--DTVGAGDSFRAGLYLALYNRRSIEK 264
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 117/289 (40%), Gaps = 34/289 (11%)
Query: 84 IDRLPKV-GETVAAKTSQTLA-----GGKGANQAACGAKLSHPTYFVGQVGEDANGKLIT 137
IDRL + GE KT++ + GGKG + + +K +G G D KL
Sbjct: 13 IDRLLFIRGELEKRKTNRVIKTEFDCGGKGLHVSGVLSKFGIKNEALGIAGSDNLDKLYA 72
Query: 138 DALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIII--VGGTNMSCWPEKFGDEDL 195
L + D++ + G T V+L D S +I G T + +
Sbjct: 73 -ILKEKHINHDFL---VEAGTSTRECFVVLSDDTNGSTMIPEAGFTVSQTNKDNLLKQIA 128
Query: 196 EVVKKAGIVLLQREIPDSVNI----QVAKAARSAGVPVIFDAGGMDAPIPQELLNF---- 247
+ VKK +V++ P + ++ + ++ G + D G E LN
Sbjct: 129 KKVKKEDMVVIAGSPPPHYTLSDFKELLRTVKATGAFLGCDNSG-------EYLNLAVEM 181
Query: 248 -IDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPI 306
+D + PNE E+ + T+S E+ ++ + ++V LGAKGS G+ +
Sbjct: 182 GVDFIKPNEDEVIAILDEKTNSLEE----NIRTLAEKIPYLVVSLGAKGSICAHNGK--L 235
Query: 307 KQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCV 355
Q I P + + TGAGD F +F G E L+ A ++ V
Sbjct: 236 YQVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKVATGCSASAV 284
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 40/316 (12%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
L+V+GS FD ET ++ TL G + P VG VG
Sbjct: 5 LLVIGSLAFDDI----------ETPFGRSDNTLGGSSTYIALSASYFTDEPIRXVGVVGS 54
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
D GK D L + + V++DG + ++++ T ++ + E
Sbjct: 55 DF-GKEHFDLLHAKNIDTRGIQVIEDGKTFRWAGRYHYDXNTRDTL----DTQLNVFAE- 108
Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQEL---LN 246
F + + + V L P+ + ++V + V P+EL L
Sbjct: 109 FDPHVPQYYRDSKFVCLGNIDPE-LQLKVLDQIDDPKLVVCDTXNFWIEGKPEELKKVLA 167
Query: 247 FIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPI 306
+D+ N+SE L+G P + + + G + +++K G G+ LF +
Sbjct: 168 RVDVFIVNDSEARLLSGDP-----NLVKTARIIREXGPKTLIIKKGEHGALLFTDN-GIF 221
Query: 307 KQSIIPAARVIDTTGAGDTFTASFAVGFV-------EGKSREECLRFAAAAASLCVQVKG 359
P + D TGAGDTF F +G + E + R+ L + +A AS CV+ G
Sbjct: 222 AAPAFPLESIYDPTGAGDTFAGGF-IGHLARCGNTSEAEXRKAVL-YGSAXASFCVEQFG 279
Query: 360 AIPSMPDRKSVLNLLQ 375
P R + L+LL+
Sbjct: 280 -----PYRYNDLDLLE 290
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 43/287 (14%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN A ++L + + +VG D G+ + + LS V D +VKD TG
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENV--DTRGIVKDEKKHTGIV 90
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKA-----GIVLLQREIPDSVNIQV 218
V L+ + ++ +++ + D + ++V++A G V+L R +V
Sbjct: 91 FVQLKGASPSFLLY---DDVAYFNXTLNDINWDIVEEAKIVNFGSVILARNPSRETVXKV 147
Query: 219 AKAARSAGVPVIFDAG-------GMDAP---IPQELLNFIDILSPNESELGRLTGMPTDS 268
K + + + + FD G + + +E + DI+ +E E+ L +
Sbjct: 148 IKKIKGSSL-IAFDVNLRLDLWRGQEEEXIKVLEESIKLADIVKASEEEVLYLENQGVE- 205
Query: 269 YEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARV--IDTTGAGDTF 326
VK G + LG KG L ++ E + +P+ V +DTTGAGD F
Sbjct: 206 --------VK----GSXLTAITLGPKGCRL-IKNETVVD---VPSYNVNPLDTTGAGDAF 249
Query: 327 TASFAVGF--VEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVL 371
A+ VG ++G + +FA A+L Q +GA S P + +L
Sbjct: 250 XAALLVGILKLKGLDLLKLGKFANLVAALSTQKRGAW-STPRKDELL 295
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 248 IDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIK 307
+D + PNE E+ + T+S E+ ++ + ++V LGAKGS G+ +
Sbjct: 183 VDFIKPNEDEVIAILDEKTNSLEE----NIRTLAEKIPYLVVSLGAKGSICAHNGK--LY 236
Query: 308 QSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAAS 352
Q I P + + TGAGD F +F G E L+ A ++
Sbjct: 237 QVIPPKVQERNDTGAGDVFVGAFIAGLAXNXPITETLKVATGCSA 281
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 43/287 (14%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN A ++L + + +VG D G+ + + LS V D +VKD TG
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENV--DTRGIVKDEKKHTGIV 90
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKA-----GIVLLQREIPDSVNIQV 218
V L+ + ++ +++ + D + ++V++A G V+L R +V
Sbjct: 91 FVQLKGASPSFLLY---DDVAYFNXTLNDINWDIVEEAKIVNFGSVILARNPSRETVXKV 147
Query: 219 AKAARSAGVPVIFDAG-------GMDAP---IPQELLNFIDILSPNESELGRLTGMPTDS 268
K + + + + FD G + + +E + DI+ +E E+ L +
Sbjct: 148 IKKIKGSSL-IAFDVNLRLDLWRGQEEEXIKVLEESIKLADIVKASEEEVLYLENQGVE- 205
Query: 269 YEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARV--IDTTGAGDTF 326
VK G + LG KG L ++ E + +P+ V +DTTGAGD F
Sbjct: 206 --------VK----GSXLTAITLGPKGFRL-IKNETVVD---VPSYNVNPLDTTGAGDAF 249
Query: 327 TASFAVGF--VEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVL 371
A+ VG ++G + +FA A+L Q +GA S P + +L
Sbjct: 250 XAALLVGILKLKGLDLLKLGKFANLVAALSTQKRGAW-STPRKDELL 295
>pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
pdb|2AFB|B Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
Length = 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 110/292 (37%), Gaps = 44/292 (15%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN AA A+ YFV ++ + G L GV+ DY + GG G
Sbjct: 44 GGAEANVAAFLAQXGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDY---IARGGNRIGIY 100
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVL--------LQREIPDSVN 215
+ + + + S ++ + + K D D E + L +E+P +
Sbjct: 101 FLEIGASQRPSKVVYDRAHSAISEAKREDFDWEKILDGARWFHFSGITPPLGKELPLILE 160
Query: 216 IQVAKAARSAGVPVIFDAGGMDAPIPQE--------LLNFIDILSPNESELGRLTGMPTD 267
K A GV V D +E ++D+L NE ++ ++ G+ +
Sbjct: 161 -DALKVANEKGVTVSCDLNYRARLWTKEEAQKVXIPFXEYVDVLIANEEDIEKVLGISVE 219
Query: 268 ------------SYEQISEAVVKCHKMGVQQVLVKLGAKGSA--------LFVEGEKPIK 307
+Y +I+E V + K + V + L SA +F G+
Sbjct: 220 GLDLKTGKLNREAYAKIAEEVTR--KYNFKTVGITLRESISATVNYWSVXVFENGQPHFS 277
Query: 308 QSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKG 359
++D GAGD+F + G + G ++ FAAAA+ L + G
Sbjct: 278 NRY--EIHIVDRVGAGDSFAGALIYGSLXGFDSQKKAEFAAAASCLKHTIPG 327
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 120/303 (39%), Gaps = 35/303 (11%)
Query: 99 SQTLA-----GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVV 153
SQT A GG AN A +KL HPT V + GK+ + L V + V
Sbjct: 46 SQTTALDIHIGGAEANVAVNLSKLGHPTRIATVVPANPIGKMAVEHLWRHQVDTAF---V 102
Query: 154 KDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDL-------EVVKKAGIVLL 206
+ G G + + + ++ + S K D DL V+ +GI +
Sbjct: 103 VEAGDRLGTYYLESGTALKAPSVVYDRQHSSFARHKSMDWDLSELLKGIRVLHVSGITIA 162
Query: 207 QREIPDSVNIQVAKAARSAGVPVIFDAG------GMDAP--IPQELLNFIDILSPNESE- 257
+ +++ + A+ G+ + FD ++A Q+LL +D S + +
Sbjct: 163 LSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLWELEAAKRAYQQLLPLVDYCSAGQMDA 222
Query: 258 --LGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKG---SALFVEGE--KPIKQSI 310
++ TD Y+ + + + V + L+ +GE + + +I
Sbjct: 223 VAFFEISSETTDYYQAMHDKYPNIELFYATKRTVISASHHLLQGHLWTQGECWESEEYAI 282
Query: 311 IPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSV 370
P ++D G GD +TA+ G + +E ++FA AAA L + G I D K++
Sbjct: 283 YP---IVDRVGGGDAYTAAVLHGILSEWRPDETVKFATAAAGLKHSIHGDINPF-DEKTI 338
Query: 371 LNL 373
+
Sbjct: 339 ADF 341
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 91/245 (37%), Gaps = 37/245 (15%)
Query: 138 DALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEV 197
D + G+ +Y+ V+ D T A M+ +D N+ I + P +
Sbjct: 88 DRMDALGLSREYVRVLPD----TYSAQAMITTDLDNNQIT------AFHPGAMMQSHVNH 137
Query: 198 VKKAGIVLLQREIPDSVN--IQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNE 255
+A + L PD +Q + AGVP IFD G Q L F
Sbjct: 138 AGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPG-------QGLPLFDGATLRRS 190
Query: 256 SELGRLTGMPTDSYEQISEAVVKCHKMG---------VQQVLVKLGAKGSAL-FVEGEKP 305
EL T + + YE A + C K G VQ +++ G G+ + +G +
Sbjct: 191 IELA--TYIAVNDYE----AKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQ 244
Query: 306 IKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMP 365
I + A RVID TG GD F G G R A+ +L + +G P
Sbjct: 245 IPA--VRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAP 302
Query: 366 DRKSV 370
R +
Sbjct: 303 TRAEI 307
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 91/245 (37%), Gaps = 37/245 (15%)
Query: 138 DALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEV 197
D + G+ +Y+ V+ D T A M+ +D N+ I + P +
Sbjct: 80 DRMDALGLSREYVRVLPD----TYSAQAMITTDLDNNQIT------AFHPGAMMQSHVNH 129
Query: 198 VKKAGIVLLQREIPDSVN--IQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNE 255
+A + L PD +Q + AGVP IFD G Q L F
Sbjct: 130 AGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPG-------QGLPLFDGATLRRS 182
Query: 256 SELGRLTGMPTDSYEQISEAVVKCHKMG---------VQQVLVKLGAKGSAL-FVEGEKP 305
EL T + + YE A + C K G VQ +++ G G+ + +G +
Sbjct: 183 IELA--TYIAVNDYE----AKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQ 236
Query: 306 IKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMP 365
I + A RVID TG GD F G G R A+ +L + +G P
Sbjct: 237 IPA--VRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAP 294
Query: 366 DRKSV 370
R +
Sbjct: 295 TRAEI 299
>pdb|2AWD|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2AWD|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2F02|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
pdb|2F02|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
Length = 323
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 114/293 (38%), Gaps = 34/293 (11%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
+ V + + DI +D L ++ ++T GGKG N L G +G
Sbjct: 5 VTVTXNPSIDISYLLDHLKLDTVNRTSQVTKT-PGGKGLNVTRVIHDLGGDVIATGVLG- 62
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT----NMSC 185
+G I + L + + ++ ++ T ++ +L Q I+ G T +S
Sbjct: 63 GFHGAFIANELKKANIPQAFTSIKEE----TRDSIAILHEGNQTEILEAGPTVSPEEISN 118
Query: 186 WPEKFGDEDLEVVKKAGIVL----LQREIPDSVNIQVAKAARSAGVPVIFDAGG------ 235
+ E F +++K+A IV L + +P ++ + A + V V+ D G
Sbjct: 119 FLENFD----QLIKQAEIVTISGSLAKGLPSDFYQELVQKAHAQEVKVLLDTSGDSLRQV 174
Query: 236 MDAPIPQELLNFIDILSPNESELGRLTG--MPTDSYEQISEAVVKCHKMGVQQVLVKLGA 293
+ P L+ PN EL L G + + A+ K G++ +++ LG
Sbjct: 175 LQGPWKPYLIK------PNLEELEGLLGQDFSENPLAAVQTALTKPXFAGIEWIVISLGK 228
Query: 294 KGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRF 346
G+ + + IP + + G+GD A A G + E L++
Sbjct: 229 DGA--IAKHHDQFYRVKIPTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKW 279
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 243 ELLNFIDILSPNESE---LGRLTGMPTDSYEQISEAVVKC----HKMGVQQVLVKLGAKG 295
E++++ +I+ NESE G + G+ D+ + + K + V++ G K
Sbjct: 231 EMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRG-KN 289
Query: 296 SALFVEG-EKPIKQSIIPAAR---VIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAA 351
L+ + + I Q ++ + +IDT GAGD F A F ++ GK L A AA
Sbjct: 290 PLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSLHAAVKAA 349
Query: 352 SLCV 355
+ +
Sbjct: 350 AYII 353
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 243 ELLNFIDILSPNESE---LGRLTGMPTDSYEQISEAVVKC----HKMGVQQVLVKLGAKG 295
E++++ +I+ NESE G + G+ D+ + + K + V++ G K
Sbjct: 231 EMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRG-KN 289
Query: 296 SALFVEG-EKPIKQSIIPAAR---VIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAA 351
L+ + + I Q ++ + +IDT GAGD F A F ++ GK L A AA
Sbjct: 290 PLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSLHAAVKAA 349
Query: 352 SLCV 355
+ +
Sbjct: 350 AYII 353
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 243 ELLNFIDILSPNESE---LGRLTGMPTDSYEQISEAVVKC----HKMGVQQVLVKLGAKG 295
E++++ +I+ NESE G + G+ D+ + + K + V++ G K
Sbjct: 229 EMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRG-KN 287
Query: 296 SALFVEG-EKPIKQSIIPAAR---VIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAA 351
L+ + + I Q ++ + +IDT GAGD F A F ++ GK L A AA
Sbjct: 288 PLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSLHAAVKAA 347
Query: 352 SLCV 355
+ +
Sbjct: 348 AYII 351
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 119/315 (37%), Gaps = 44/315 (13%)
Query: 80 IYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTY------FVGQVGEDANG 133
I+ +I+++P V + + GG G N A A+ Y +VG + +D G
Sbjct: 49 IFDDIEKMPNV---------RYVPGGSGLNVARV-AQWMQQAYKGKFVTYVGCIADDRYG 98
Query: 134 KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDE 193
K++ +A G+ + + K G +G V + + + +G N
Sbjct: 99 KVLKEAAEHEGIVMAVEHTTKAG---SGACAVCITGKERTLVADLGAANHLSSEHMRSPA 155
Query: 194 DLEVVKKAGIVLLQ-REIPDSVN--IQVAKAARSA-GVPVIFDAGGMDAPIPQ------- 242
+ + ++ I + VN +Q + AR G+ +I + AP
Sbjct: 156 VVRAMDESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMI----NLSAPFIMQFFSAQL 211
Query: 243 -ELLNFIDILSPNESELGRLTGM---PTDSYEQISE-AVVKCHKMGVQQVLVKLGAKGSA 297
E+L + DI+ N E M TD E+I+ AV + G + +V +
Sbjct: 212 GEVLPYTDIIVANRHEAKEFANMMKWDTDCVEEIARRAVSEVPYTGTKGRVVVFTRDIES 271
Query: 298 LFVEGEKPIKQSIIPAA---RVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLC 354
+ + ++ +P +VID GAGD F F + GK C A
Sbjct: 272 TVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAVGKDLRRCCETGHYTAQEV 331
Query: 355 VQVKGAIPSMPDRKS 369
+Q G S P++ S
Sbjct: 332 IQRDGC--SFPEKPS 344
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 313 AARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKG---AIPSMP 365
A +++DT GAGD F F G +GK+ ++C+ A A +Q G + S+P
Sbjct: 307 AEKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVGFSLSFTSLP 362
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 313 AARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKG---AIPSMP 365
A +++DT GAGD F F G +GK+ ++C+ A A +Q G + S+P
Sbjct: 307 AEKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVGFSLSFTSLP 362
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 21/148 (14%)
Query: 242 QELLNFIDILSPNESELGRLTGM-PTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFV 300
++L +++PN E +L+GM + + + EA K H +G Q V++ G K +
Sbjct: 129 EQLAPLATVITPNLFEASQLSGMDELKTVDDMIEAAKKIHALGAQYVVITGGGK-----L 183
Query: 301 EGEKPI------KQSIIPAARVID---TTGAGDTFTASFAVGFVEGKSREECLRFAAAAA 351
+ EK + + + + + +ID T GAG TF+A+ +G +E + AA
Sbjct: 184 KHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAKGAEVKEAIY--AAKE 241
Query: 352 SLCVQVKGAIPSM----PDRKSVLNLLQ 375
+ +K + P P + S L L Q
Sbjct: 242 FITAAIKESFPLNQYVGPTKHSALRLNQ 269
>pdb|1VK4|A Chain A, Crystal Structure Of Pfkb Carbohydrate Kinase (tm0415)
From Thermotoga Maritima At 1.91 A Resolution
Length = 298
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 237 DAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGS 296
D ++ L ++D+ + E LTG + E+ G + +++ A G
Sbjct: 168 DWEXKEKYLKYLDLFKVDSREAETLTGT-----NDLRESCRIIRSFGAK-IILATHASGV 221
Query: 297 ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGK-SREECLRFAAAAASL 353
+F + ++ + + TG GDT TA+F VGFV K S E+ +FAAA S+
Sbjct: 222 IVF---DGNFYEASFRSWSLEGRTGRGDTCTAAFLVGFVFKKXSIEKATKFAAAVTSV 276
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 313 AARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKG 359
A +++DT GAGD F F +GK+ ++C+ A A +Q G
Sbjct: 327 AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG 373
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 313 AARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKG---AIPSMP 365
A +++DT GAGD F F +GK+ ++C+ A A +Q G + S+P
Sbjct: 307 AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSFTSLP 362
>pdb|4E84|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda
pdb|4E84|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda
Length = 352
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 222 ARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281
AR+AG V+ D G D +++PN +EL + G + + +
Sbjct: 210 ARAAGKAVLVDPKGDD----WARYRGASLITPNRAELREVVGQWKSEDDLRARVANLRAE 265
Query: 282 MGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSRE 341
+ + +L+ +G LF G + ++ A V D +GAGDT A+ A G
Sbjct: 266 LDIDALLLTRSEEGXTLFSAGGELHAPAL--AREVFDVSGAGDTVIATVATXLGAGVPLV 323
Query: 342 ECLRFAAAAASLCV 355
+ + A AA + V
Sbjct: 324 DAVVLANRAAGIVV 337
>pdb|3RPH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+.
pdb|3RPZ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadph
pdb|3RQ2|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadh
pdb|3RQ5|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Coa
pdb|3RQ6|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
Adp-Ribose
pdb|3RQ8|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RQH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P6-Di(Adenosine-5') Hexaphosphate
pdb|3RQQ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RQX|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
Length = 279
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 23/149 (15%)
Query: 188 EKFGDEDLEVVKKAGIVLLQREIPDSVNIQVA-KAARSAGVPVIFDAGGM--------DA 238
+K D LE +A + + +P + ++Q A +A PVI DAG + +
Sbjct: 88 KKAADAQLEETYRA--IAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREG 145
Query: 239 PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSAL 298
P+ IL+P+ E R+TG+P + ++ K +Q V+V G +
Sbjct: 146 PV---------ILTPHPGEFFRMTGVPVNELQKKRAEYAKEWAAQLQTVIVLKGNQTVIA 196
Query: 299 FVEGEKPIKQSIIPAARVIDTTGAGDTFT 327
F +G+ + + + G GDT T
Sbjct: 197 FPDGDCWLNPT---GNGALAKGGTGDTLT 222
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 222 ARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281
AR+AG V+ D G D +++PN +EL + G + + +
Sbjct: 210 ARAAGKAVLVDPKGDD----WARYRGASLITPNRAELREVVGQWKSEDDLRARVANLRAE 265
Query: 282 MGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSRE 341
+ + +L+ +G LF G + ++ A V D +GAGDT A+ A G
Sbjct: 266 LDIDALLLTRSEEGMTLFSAGGELHAPAL--AREVFDVSGAGDTVIATVATMLGAGVPLV 323
Query: 342 ECLRFAAAAASLCV 355
+ + A AA + V
Sbjct: 324 DAVVLANRAAGIVV 337
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 281 KMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSR 340
+ GV+ +VK G KG + E VI+ GAGD F + G +
Sbjct: 224 ERGVELAIVKQGPKGVXAXTKDETVEVPPFF--VDVINGLGAGDAFGGALCHGLLSEWPL 281
Query: 341 EECLRFAAAAASLC---VQVKGAIPSMPDRKSVLN 372
E+ LRFA A +L ++ A P+ + ++ LN
Sbjct: 282 EKVLRFANTAGALVASRLECSTAXPTTDEVEASLN 316
>pdb|1KYH|A Chain A, Structure Of Bacillus Subtilis Yxko, A Member Of The
Upf0031 Family And A Putative Kinase
Length = 276
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 188 EKFGDEDLEVVKKAGIVLLQREIPDSVNIQVA-KAARSAGVPVIFDAGGM--------DA 238
+K D LE +A + + +P + ++Q A +A PVI DAG + +
Sbjct: 85 KKAADAQLEETYRA--IAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREG 142
Query: 239 PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSAL 298
P+ IL+P+ E R TG+P + ++ K +Q V+V G +
Sbjct: 143 PV---------ILTPHPGEFFRXTGVPVNELQKKRAEYAKEWAAQLQTVIVLKGNQTVIA 193
Query: 299 FVEGE 303
F +G+
Sbjct: 194 FPDGD 198
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 33/87 (37%)
Query: 288 LVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFA 347
+ LG KG L I ++P D TG GD F A F G G E +
Sbjct: 231 VTTLGPKGVDLVEPDGTTIHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSAQLG 290
Query: 348 AAAASLCVQVKGAIPSMPDRKSVLNLL 374
+ A L ++ G D ++ + L
Sbjct: 291 SLVAVLVLESTGTQEWQWDYEAAASRL 317
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 14/162 (8%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ N++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---NTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280
A AG F + +P + N I + +L R G+P V
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVPF--------YVRSGK 338
Query: 281 KMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGA 322
++ +Q V + K E+ +++++ +ID GA
Sbjct: 339 RLAAKQTRVDIVFKAGTFNFGSEQEAQEAVLSI--IIDPKGA 378
>pdb|4IQ0|A Chain A, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
pdb|4IQ0|B Chain B, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
pdb|4IQ0|C Chain C, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
pdb|4IQ0|D Chain D, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
Length = 328
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 193 EDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS 252
+ LEV K+ L+ P+S++ AKAA SAG VI + + PQE + I
Sbjct: 56 DQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQ--PQEWFDLIQTAE 113
Query: 253 PN 254
N
Sbjct: 114 KN 115
>pdb|2HO5|A Chain A, Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAMILY
FROM Streptococcus Pneumoniae
pdb|2HO5|B Chain B, Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAMILY
FROM Streptococcus Pneumoniae
Length = 325
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 193 EDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS 252
+ LEV K+ L+ P+S++ AKAA SAG VI + + PQE + I
Sbjct: 53 DQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQ--PQEWFDLIQTAE 110
Query: 253 PN 254
N
Sbjct: 111 KN 112
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 278 KCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG 337
+ + GV+ V+VK G +G + + + P A+V+DTT AGD+F A + G
Sbjct: 234 RYARAGVRSVVVKNGPHAVHFLQDGRRG-RVPVPPVAQVVDTTAAGDSFNAGLLDSVLAG 292
Query: 338 KSREECLRFAAAAASLCVQVKGAIPSMP 365
+ E + AAA A VQ KGA+ +P
Sbjct: 293 QPLETAIAAAAALAGQVVQGKGALVEVP 320
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 14/162 (8%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ +++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---HTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280
A AG F + +P + N I + +L R G+P V
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVPF--------YVRSGK 338
Query: 281 KMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGA 322
++ +Q V + K E+ +++++ +ID GA
Sbjct: 339 RLAAKQTRVDIVFKAGTFNFGSEQEAQEAVLSI--IIDPKGA 378
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 14/162 (8%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ +++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---HTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280
A AG F + +P + N I + +L R G+P V
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVPF--------YVRSGK 338
Query: 281 KMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGA 322
++ +Q V + K E+ +++++ +ID GA
Sbjct: 339 RLAAKQTRVDIVFKAGTFNFGSEQEAQEAVLSI--IIDPKGA 378
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 272 ISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFA 331
+ EA K + VQ + V GA + + + I + + + +TT G F A A
Sbjct: 393 VXEAXSKDSGIDVQSLRVDGGAVKNNFIXQFQADIVNTSVERPEIQETTALGAAFLAGLA 452
Query: 332 VGFVEGK 338
VGF E K
Sbjct: 453 VGFWESK 459
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 14/162 (8%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ +++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---HTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280
A AG F + +P + N I + +L R G+P V
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVPF--------YVRSGK 338
Query: 281 KMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGA 322
++ +Q V + K E+ +++++ +ID GA
Sbjct: 339 RLAAKQTRVDIVFKAGTFNFGSEQEAQEAVLSI--IIDPKGA 378
>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|V Chain V, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 328 ASFAVGFV-----EGKSREECLRFAAAAASLCVQVKGA 360
+S+ G+V EG ++EECL+F A A +L ++ G+
Sbjct: 132 SSYIYGYVDATYREGMTKEECLQFTANALALAMERDGS 169
>pdb|1LHP|A Chain A, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHP|B Chain B, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHR|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1LHR|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1RFT|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Amp-
Pcp And Pyridoxamine
pdb|1RFU|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|C Chain C, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|D Chain D, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|E Chain E, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|F Chain F, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|G Chain G, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|H Chain H, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFV|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1RFV|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1YGJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YGK|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YHJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
Length = 312
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 249 DILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVK----LGAKGS 296
DI++PN+ E LTG S E+ E + H MG V++ L +GS
Sbjct: 145 DIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGS 196
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ +++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---HTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMP 265
A AG F + +P + N I + +L R G+P
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVP 331
>pdb|1XDO|A Chain A, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDO|B Chain B, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDP|A Chain A, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
pdb|1XDP|B Chain B, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
Length = 687
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 199 KKAGIVL-LQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236
KK +V+ LQ + NI AK AGV VIF A G+
Sbjct: 393 KKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGL 431
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 256 SELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAAR 315
S+LG +P S+EQIS + K + G+ + G +EG K + IP
Sbjct: 465 SKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFV- 523
Query: 316 VIDTTGAGDTFTASFAVG 333
VI T + + + F+VG
Sbjct: 524 VIPATVSNNVPGSDFSVG 541
>pdb|3ZS7|A Chain A, Crystal Structure Of Pyridoxal Kinase From Trypanosoma
Brucei
Length = 300
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 24/104 (23%)
Query: 242 QELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVE 301
+EL+ DI++PN E L+G+ + A H GV V++K F E
Sbjct: 137 RELVPLADIVTPNYFEASLLSGVTVNDLSSAILAADWFHNCGVAHVIIK-------SFRE 189
Query: 302 GEKP--------IKQSIIPAARVID---------TTGAGDTFTA 328
E P +K+ A R TG GD F A
Sbjct: 190 QENPTHLRFLYSVKEGSEAAVRRFSGVVPYHEGRYTGTGDVFAA 233
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 16/51 (31%)
Query: 270 EQISEAVVKCHKMGV-------QQVL---------VKLGAKGSALFVEGEK 304
+QI EAV+ CH+MGV + +L VKL G A+ VEGE+
Sbjct: 117 QQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ 167
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 16/51 (31%)
Query: 270 EQISEAVVKCHKMGV-------QQVL---------VKLGAKGSALFVEGEK 304
+QI EAV+ CH+MGV + +L VKL G A+ VEGE+
Sbjct: 128 QQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,374,615
Number of Sequences: 62578
Number of extensions: 422210
Number of successful extensions: 1168
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 101
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)