Query 017101
Match_columns 377
No_of_seqs 352 out of 1779
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00292 ribokinase; Provision 100.0 5.4E-50 1.2E-54 376.7 36.4 306 67-376 15-326 (326)
2 PRK11142 ribokinase; Provision 100.0 3.6E-50 7.8E-55 374.7 34.9 303 67-375 2-304 (306)
3 PRK09954 putative kinase; Prov 100.0 5.1E-50 1.1E-54 381.6 29.3 338 14-376 17-361 (362)
4 cd01174 ribokinase Ribokinase 100.0 8E-48 1.7E-52 356.5 34.2 292 69-366 1-292 (292)
5 PRK09850 pseudouridine kinase; 100.0 8.7E-48 1.9E-52 359.5 31.8 305 65-376 2-308 (313)
6 PLN02341 pfkB-type carbohydrat 100.0 5.5E-47 1.2E-51 369.8 32.5 305 62-376 67-409 (470)
7 PRK15074 inosine/guanosine kin 100.0 2.6E-47 5.5E-52 364.6 28.6 320 39-370 5-426 (434)
8 PLN02813 pfkB-type carbohydrat 100.0 9.3E-47 2E-51 363.2 30.4 304 61-375 63-406 (426)
9 PLN02323 probable fructokinase 100.0 4E-46 8.7E-51 350.9 33.2 300 63-377 6-328 (330)
10 KOG2855 Ribokinase [Carbohydra 100.0 1.2E-46 2.7E-51 337.3 26.0 301 65-376 7-326 (330)
11 TIGR02152 D_ribokin_bact ribok 100.0 1.5E-45 3.3E-50 341.5 32.5 293 74-371 1-293 (293)
12 cd01168 adenosine_kinase Adeno 100.0 1E-45 2.2E-50 345.6 27.4 285 68-362 2-311 (312)
13 cd01945 ribokinase_group_B Rib 100.0 8.6E-45 1.9E-49 334.9 33.1 284 69-366 1-284 (284)
14 PTZ00247 adenosine kinase; Pro 100.0 2.7E-45 5.9E-50 347.0 27.9 292 66-362 4-336 (345)
15 COG0524 RbsK Sugar kinases, ri 100.0 2.2E-44 4.8E-49 336.5 32.2 299 69-376 1-309 (311)
16 PLN02967 kinase 100.0 3.4E-44 7.3E-49 350.0 32.0 301 67-373 196-544 (581)
17 PLN02543 pfkB-type carbohydrat 100.0 4.3E-44 9.2E-49 346.4 31.1 303 67-377 125-490 (496)
18 TIGR02198 rfaE_dom_I rfaE bifu 100.0 8.4E-44 1.8E-48 333.2 31.7 296 67-375 7-315 (315)
19 PF00294 PfkB: pfkB family car 100.0 2.1E-45 4.5E-50 341.7 20.3 293 67-367 1-301 (301)
20 cd01944 YegV_kinase_like YegV- 100.0 1.3E-43 2.8E-48 327.9 30.0 279 69-359 1-289 (289)
21 cd01942 ribokinase_group_A Rib 100.0 2.2E-43 4.7E-48 324.8 31.1 271 69-360 1-278 (279)
22 TIGR03828 pfkB 1-phosphofructo 100.0 1.6E-43 3.5E-48 329.6 29.4 291 72-376 4-301 (304)
23 PLN02379 pfkB-type carbohydrat 100.0 9E-43 2E-47 330.4 30.1 296 67-372 19-353 (367)
24 cd01939 Ketohexokinase Ketohex 100.0 7.7E-43 1.7E-47 322.9 29.0 281 69-360 1-289 (290)
25 cd01172 RfaE_like RfaE encodes 100.0 1.7E-42 3.7E-47 322.7 31.0 286 69-364 1-298 (304)
26 cd01941 YeiC_kinase_like YeiC- 100.0 1.5E-42 3.3E-47 320.6 29.3 283 69-356 1-287 (288)
27 PRK09434 aminoimidazole ribosi 100.0 2.9E-42 6.3E-47 321.2 31.0 282 67-371 2-304 (304)
28 cd01166 KdgK 2-keto-3-deoxyglu 100.0 1.6E-42 3.5E-47 321.3 29.0 277 69-360 1-293 (294)
29 cd01947 Guanosine_kinase_like 100.0 4.3E-42 9.4E-47 313.8 30.2 264 69-361 1-265 (265)
30 PRK10294 6-phosphofructokinase 100.0 7E-42 1.5E-46 319.1 30.2 293 70-376 5-306 (309)
31 cd01167 bac_FRK Fructokinases 100.0 5.1E-42 1.1E-46 318.1 28.6 274 69-361 1-295 (295)
32 PRK13508 tagatose-6-phosphate 100.0 5.8E-42 1.3E-46 319.7 28.9 295 70-376 3-303 (309)
33 PRK09513 fruK 1-phosphofructok 100.0 1E-41 2.2E-46 318.5 30.1 293 70-376 5-305 (312)
34 TIGR03168 1-PFK hexose kinase, 100.0 1.4E-41 3.1E-46 316.3 29.4 289 75-377 7-302 (303)
35 TIGR01231 lacC tagatose-6-phos 100.0 3.3E-41 7.2E-46 314.6 29.3 295 71-376 3-303 (309)
36 cd01940 Fructoselysine_kinase_ 100.0 3.7E-41 7.9E-46 307.5 28.8 261 69-361 1-264 (264)
37 cd01164 FruK_PfkB_like 1-phosp 100.0 4.6E-41 9.9E-46 310.9 27.8 278 70-360 3-288 (289)
38 PRK11316 bifunctional heptose 100.0 2.9E-40 6.3E-45 325.4 31.9 297 67-375 10-313 (473)
39 COG1105 FruK Fructose-1-phosph 100.0 1.5E-40 3.2E-45 298.4 26.4 292 74-377 7-304 (310)
40 PLN02548 adenosine kinase 100.0 4.4E-40 9.4E-45 310.1 25.2 272 86-362 34-325 (332)
41 cd01943 MAK32 MAK32 kinase. M 100.0 1.1E-40 2.3E-45 312.7 20.0 274 69-360 1-304 (328)
42 PRK09813 fructoselysine 6-kina 100.0 4.1E-39 8.8E-44 293.2 27.8 257 68-360 1-259 (260)
43 PLN02630 pfkB-type carbohydrat 100.0 1.6E-36 3.6E-41 283.0 28.9 266 65-376 9-291 (335)
44 COG2870 RfaE ADP-heptose synth 100.0 9.7E-37 2.1E-41 275.4 25.6 291 67-372 10-309 (467)
45 cd01946 ribokinase_group_C Rib 100.0 2.9E-36 6.3E-41 277.0 24.8 265 69-361 1-276 (277)
46 cd01937 ribokinase_group_D Rib 100.0 4.9E-36 1.1E-40 272.1 24.9 248 69-356 1-254 (254)
47 KOG2854 Possible pfkB family c 100.0 2.9E-34 6.3E-39 254.2 17.8 288 69-361 8-335 (343)
48 KOG2947 Carbohydrate kinase [C 100.0 2.2E-31 4.8E-36 224.7 20.3 281 67-360 4-298 (308)
49 cd00287 ribokinase_pfkB_like r 100.0 4.8E-30 1E-34 223.4 22.7 191 69-335 1-196 (196)
50 PRK12412 pyridoxal kinase; Rev 99.8 1.9E-18 4.1E-23 157.6 24.2 162 195-357 65-246 (268)
51 TIGR00097 HMP-P_kinase phospho 99.8 1.6E-18 3.5E-23 157.0 18.3 156 201-357 68-240 (254)
52 cd01169 HMPP_kinase 4-amino-5- 99.8 8.3E-18 1.8E-22 151.4 18.5 154 200-356 68-240 (242)
53 PRK12413 phosphomethylpyrimidi 99.8 9.3E-18 2E-22 152.1 18.8 216 121-357 4-242 (253)
54 PRK08573 phosphomethylpyrimidi 99.8 1.3E-17 2.9E-22 162.3 20.4 145 211-356 82-243 (448)
55 cd01173 pyridoxal_pyridoxamine 99.8 7.2E-18 1.6E-22 152.9 15.1 154 200-356 72-250 (254)
56 TIGR00687 pyridox_kin pyridoxa 99.8 1.6E-17 3.4E-22 153.2 16.5 155 199-355 73-254 (286)
57 PRK06427 bifunctional hydroxy- 99.8 2.4E-17 5.3E-22 150.4 17.5 156 200-357 73-248 (266)
58 PRK05756 pyridoxamine kinase; 99.8 2.1E-17 4.5E-22 152.4 16.8 156 199-357 73-255 (286)
59 PRK07105 pyridoxamine kinase; 99.8 1.9E-17 4.2E-22 152.4 16.6 157 200-358 75-256 (284)
60 PRK12616 pyridoxal kinase; Rev 99.7 1.7E-16 3.7E-21 144.8 17.5 156 201-357 75-249 (270)
61 KOG3009 Predicted carbohydrate 99.7 6.5E-17 1.4E-21 148.7 14.4 240 69-357 342-600 (614)
62 PRK08176 pdxK pyridoxal-pyrido 99.7 2E-16 4.3E-21 145.2 17.4 155 200-357 88-266 (281)
63 cd01171 YXKO-related B.subtili 99.6 2.3E-14 4.9E-19 129.9 15.3 159 196-358 73-236 (254)
64 PLN02898 HMP-P kinase/thiamin- 99.6 4.9E-14 1.1E-18 139.7 18.7 156 201-357 79-253 (502)
65 PTZ00347 phosphomethylpyrimidi 99.6 5.2E-14 1.1E-18 139.5 17.5 159 196-357 293-478 (504)
66 PTZ00344 pyridoxal kinase; Pro 99.5 2.2E-13 4.7E-18 126.1 16.0 152 203-357 79-258 (296)
67 TIGR00196 yjeF_cterm yjeF C-te 99.5 4.2E-13 9.2E-18 122.7 17.2 173 196-376 88-268 (272)
68 cd01170 THZ_kinase 4-methyl-5- 99.5 2.2E-12 4.8E-17 115.5 18.6 162 190-355 39-220 (242)
69 PF08543 Phos_pyr_kin: Phospho 99.5 1.5E-12 3.2E-17 117.2 15.1 156 200-356 60-233 (246)
70 PRK14713 multifunctional hydro 99.5 2.9E-12 6.3E-17 127.6 18.6 152 202-355 100-270 (530)
71 PRK09517 multifunctional thiam 99.5 2E-12 4.2E-17 133.6 17.5 154 202-357 312-484 (755)
72 COG0351 ThiD Hydroxymethylpyri 99.5 3.6E-12 7.9E-17 112.6 16.3 145 211-356 83-244 (263)
73 PLN02978 pyridoxal kinase 99.4 1.8E-11 3.9E-16 113.7 17.3 142 214-357 103-267 (308)
74 COG2240 PdxK Pyridoxal/pyridox 99.2 1.9E-10 4.2E-15 102.2 14.2 156 197-356 70-249 (281)
75 PRK09355 hydroxyethylthiazole 99.1 8.9E-09 1.9E-13 93.5 19.0 160 192-355 46-224 (263)
76 PTZ00493 phosphomethylpyrimidi 99.1 1E-08 2.2E-13 94.6 18.6 154 202-357 75-285 (321)
77 TIGR00694 thiM hydroxyethylthi 99.0 5.9E-08 1.3E-12 87.4 18.2 157 192-352 41-216 (249)
78 KOG2598 Phosphomethylpyrimidin 98.5 2E-06 4.2E-11 80.0 13.8 144 213-357 105-283 (523)
79 KOG2599 Pyridoxal/pyridoxine/p 98.5 3.5E-06 7.6E-11 73.8 13.8 130 217-348 101-254 (308)
80 PF02110 HK: Hydroxyethylthiaz 98.2 0.0001 2.2E-09 65.5 16.0 154 192-349 41-213 (246)
81 PRK03979 ADP-specific phosphof 98.1 0.00025 5.4E-09 68.3 18.5 186 100-289 98-344 (463)
82 PRK10565 putative carbohydrate 98.1 0.00028 6.2E-09 70.0 17.7 149 196-350 316-468 (508)
83 PRK14039 ADP-dependent glucoki 98.0 0.00046 9.9E-09 66.4 18.0 231 99-371 86-376 (453)
84 TIGR02045 P_fruct_ADP ADP-spec 98.0 0.00084 1.8E-08 64.5 18.4 182 101-289 86-330 (446)
85 PF01256 Carb_kinase: Carbohyd 98.0 0.00011 2.5E-09 65.6 11.7 172 194-375 61-241 (242)
86 COG2145 ThiM Hydroxyethylthiaz 97.8 0.00097 2.1E-08 58.8 15.0 151 192-346 47-217 (265)
87 PRK14038 ADP-dependent glucoki 97.5 0.0074 1.6E-07 58.2 17.5 141 196-374 220-387 (453)
88 PF04587 ADP_PFK_GK: ADP-speci 97.3 0.0026 5.7E-08 62.0 11.9 154 101-262 92-291 (444)
89 COG0063 Predicted sugar kinase 96.6 0.096 2.1E-06 47.9 14.9 171 197-375 98-278 (284)
90 KOG3974 Predicted sugar kinase 96.6 0.039 8.4E-07 48.7 11.7 155 196-357 97-267 (306)
91 cd01938 ADPGK_ADPPFK ADP-depen 94.4 0.33 7.1E-06 47.3 10.1 152 100-262 102-285 (445)
92 COG4809 Archaeal ADP-dependent 92.0 6.3 0.00014 37.3 13.8 94 196-289 221-346 (466)
93 PRK10076 pyruvate formate lyas 85.6 10 0.00022 33.3 10.1 82 202-286 40-130 (213)
94 COG1180 PflA Pyruvate-formate 78.9 21 0.00045 32.3 9.8 86 200-288 83-177 (260)
95 PRK03975 tfx putative transcri 76.3 1.5 3.2E-05 35.6 1.4 43 107-149 52-96 (141)
96 TIGR01321 TrpR trp operon repr 70.4 1.8 4E-05 32.3 0.6 19 15-33 56-74 (94)
97 COG1476 Predicted transcriptio 67.0 1.6 3.4E-05 30.5 -0.3 19 15-33 15-33 (68)
98 COG0269 SgbH 3-hexulose-6-phos 66.3 34 0.00073 29.9 7.5 91 197-292 77-172 (217)
99 TIGR02826 RNR_activ_nrdG3 anae 61.1 20 0.00043 29.4 5.1 55 203-257 64-119 (147)
100 PRK13762 tRNA-modifying enzyme 56.1 1.6E+02 0.0034 27.6 10.8 75 214-288 146-226 (322)
101 PRK15418 transcriptional regul 56.0 3.6 7.9E-05 38.4 -0.1 19 15-33 30-48 (318)
102 PRK06598 aspartate-semialdehyd 55.6 1.9E+02 0.0042 27.6 11.6 40 196-237 61-101 (369)
103 PF13412 HTH_24: Winged helix- 53.7 0.79 1.7E-05 29.4 -3.6 22 15-36 18-39 (48)
104 PF13986 DUF4224: Domain of un 52.2 25 0.00054 22.5 3.4 32 252-288 2-33 (47)
105 PF01118 Semialdhyde_dh: Semia 52.0 33 0.00073 26.7 4.9 40 195-237 61-100 (121)
106 TIGR02495 NrdG2 anaerobic ribo 51.9 80 0.0017 26.6 7.7 75 215-289 79-159 (191)
107 COG2512 Predicted membrane-ass 51.4 2.5 5.5E-05 38.1 -1.8 30 15-46 211-240 (258)
108 PRK13397 3-deoxy-7-phosphohept 51.1 82 0.0018 28.3 7.6 81 213-295 66-162 (250)
109 PHA00438 hypothetical protein 51.0 13 0.00027 26.4 1.9 16 320-335 47-62 (81)
110 PF13936 HTH_38: Helix-turn-he 50.6 3.3 7.2E-05 26.1 -0.9 18 15-32 21-38 (44)
111 KOG1301 Vesicle trafficking pr 50.4 13 0.00028 36.6 2.6 94 119-227 41-137 (621)
112 TIGR03879 near_KaiC_dom probab 48.7 3.7 8E-05 29.2 -1.0 22 15-36 33-54 (73)
113 PF01381 HTH_3: Helix-turn-hel 48.5 4 8.7E-05 26.7 -0.8 19 15-33 10-28 (55)
114 PF13744 HTH_37: Helix-turn-he 48.2 4.2 9.1E-05 29.4 -0.8 18 15-32 32-49 (80)
115 TIGR00721 tfx DNA-binding prot 48.2 9.9 0.00022 30.7 1.3 23 13-35 20-42 (137)
116 PRK04148 hypothetical protein; 45.3 1.6E+02 0.0035 23.7 9.3 38 196-234 73-110 (134)
117 PF10911 DUF2717: Protein of u 44.2 18 0.0004 25.6 1.9 19 318-336 45-63 (77)
118 PF11469 Ribonucleas_3_2: Ribo 44.0 39 0.00084 25.6 3.7 31 317-347 53-84 (120)
119 TIGR02494 PFLE_PFLC glycyl-rad 43.7 2E+02 0.0044 26.2 9.5 72 212-286 140-217 (295)
120 PF08535 KorB: KorB domain; I 43.5 3.5 7.5E-05 30.8 -1.9 28 15-44 4-31 (93)
121 PRK01381 Trp operon repressor; 42.2 12 0.00025 28.3 0.8 18 15-32 56-73 (99)
122 COG0136 Asd Aspartate-semialde 41.5 3.1E+02 0.0067 25.8 13.6 145 120-291 3-158 (334)
123 COG1654 BirA Biotin operon rep 41.2 8.4 0.00018 27.8 -0.1 25 12-36 17-41 (79)
124 COG1058 CinA Predicted nucleot 40.0 49 0.0011 29.8 4.5 20 131-150 21-40 (255)
125 PF13384 HTH_23: Homeodomain-l 39.0 7.4 0.00016 24.9 -0.6 19 15-33 18-36 (50)
126 COG2390 DeoR Transcriptional r 39.0 8.7 0.00019 35.9 -0.4 20 14-33 26-45 (321)
127 PF14549 P22_Cro: DNA-binding 38.8 6.6 0.00014 26.7 -0.9 21 13-33 8-28 (60)
128 PHA01976 helix-turn-helix prot 38.7 8.7 0.00019 26.3 -0.4 19 15-33 16-34 (67)
129 TIGR03070 couple_hipB transcri 38.6 8.6 0.00019 25.1 -0.4 18 15-32 16-33 (58)
130 PRK11145 pflA pyruvate formate 38.5 1.9E+02 0.0041 25.6 8.2 81 203-286 73-164 (246)
131 KOG4184 Predicted sugar kinase 38.4 51 0.0011 31.0 4.3 151 99-263 138-317 (478)
132 TIGR02493 PFLA pyruvate format 38.3 2.7E+02 0.0059 24.3 9.4 72 212-286 80-159 (235)
133 PF06322 Phage_NinH: Phage Nin 37.9 9 0.00019 25.9 -0.4 19 14-32 16-34 (64)
134 PF02796 HTH_7: Helix-turn-hel 37.7 8.1 0.00018 24.4 -0.6 18 15-32 22-39 (45)
135 PRK06901 aspartate-semialdehyd 37.6 3.5E+02 0.0076 25.4 12.5 139 125-291 9-155 (322)
136 PF04967 HTH_10: HTH DNA bindi 37.5 6 0.00013 26.2 -1.3 26 10-35 19-44 (53)
137 PHA00542 putative Cro-like pro 37.3 9.1 0.0002 27.8 -0.5 22 15-36 32-53 (82)
138 PF04218 CENP-B_N: CENP-B N-te 37.1 13 0.00029 24.4 0.4 17 16-32 24-40 (53)
139 PF00070 Pyr_redox: Pyridine n 36.5 46 0.001 23.6 3.2 42 107-148 11-58 (80)
140 PTZ00293 thymidine kinase; Pro 36.3 2.9E+02 0.0064 24.1 8.7 55 196-251 73-133 (211)
141 COG3093 VapI Plasmid maintenan 36.1 10 0.00022 28.9 -0.4 21 15-35 24-44 (104)
142 COG5606 Uncharacterized conser 35.9 16 0.00036 26.6 0.7 19 15-33 42-60 (91)
143 PRK14039 ADP-dependent glucoki 35.6 26 0.00057 34.3 2.2 32 304-335 416-447 (453)
144 COG1356 tfx Transcriptional re 35.6 16 0.00034 28.7 0.6 43 107-149 54-98 (143)
145 PF10087 DUF2325: Uncharacteri 35.5 93 0.002 23.1 4.8 38 196-233 44-82 (97)
146 PF02659 DUF204: Domain of unk 34.9 1E+02 0.0022 21.1 4.6 25 324-349 4-28 (67)
147 PLN02383 aspartate semialdehyd 34.5 4.1E+02 0.0088 25.2 12.1 97 118-237 7-103 (344)
148 smart00354 HTH_LACI helix_turn 34.5 11 0.00024 26.3 -0.4 19 16-34 2-20 (70)
149 TIGR02742 TrbC_Ftype type-F co 34.4 77 0.0017 25.3 4.3 31 203-233 2-32 (130)
150 TIGR01889 Staph_reg_Sar staphy 34.2 9.2 0.0002 29.4 -0.9 31 14-46 43-73 (109)
151 PRK06702 O-acetylhomoserine am 34.1 2.1E+02 0.0045 28.1 8.2 49 100-150 80-131 (432)
152 PF09673 TrbC_Ftype: Type-F co 34.1 67 0.0014 24.9 3.9 30 204-233 2-31 (113)
153 smart00419 HTH_CRP helix_turn_ 33.8 11 0.00025 23.5 -0.4 22 15-36 9-30 (48)
154 PRK10072 putative transcriptio 33.3 12 0.00026 28.2 -0.4 27 7-33 34-65 (96)
155 cd00562 NifX_NifB This CD repr 32.9 70 0.0015 23.7 3.9 39 104-147 47-85 (102)
156 PF02001 DUF134: Protein of un 32.8 13 0.00027 28.6 -0.3 20 15-34 58-77 (106)
157 PF13730 HTH_36: Helix-turn-he 32.6 4.1 8.9E-05 26.8 -2.8 21 16-36 27-47 (55)
158 PF04545 Sigma70_r4: Sigma-70, 32.4 12 0.00025 24.1 -0.5 18 15-32 21-38 (50)
159 TIGR01361 DAHP_synth_Bsub phos 31.7 2E+02 0.0043 26.0 7.2 80 212-293 75-170 (260)
160 cd00757 ThiF_MoeB_HesA_family 31.2 3.6E+02 0.0078 23.6 9.7 35 196-231 107-141 (228)
161 TIGR02531 yecD_yerC TrpR-relat 31.1 14 0.00031 27.3 -0.3 19 15-33 51-69 (88)
162 PRK05967 cystathionine beta-ly 30.7 3.8E+02 0.0083 25.9 9.3 21 214-234 167-187 (395)
163 PF00325 Crp: Bacterial regula 30.7 11 0.00023 22.1 -0.8 19 15-33 3-21 (32)
164 PRK07050 cystathionine beta-ly 30.5 4.6E+02 0.0099 25.2 9.9 22 214-235 168-189 (394)
165 KOG3361 Iron binding protein i 30.5 47 0.001 26.3 2.5 39 318-356 85-124 (157)
166 TIGR00334 5S_RNA_mat_M5 ribonu 30.3 2E+02 0.0043 24.3 6.3 79 200-278 22-107 (174)
167 PF02954 HTH_8: Bacterial regu 30.2 12 0.00027 23.1 -0.6 17 16-32 20-36 (42)
168 PF13443 HTH_26: Cro/C1-type H 30.1 11 0.00024 25.4 -0.9 19 15-33 11-29 (63)
169 COG1342 Predicted DNA-binding 30.1 15 0.00032 27.4 -0.3 19 15-33 50-68 (99)
170 COG1159 Era GTPase [General fu 29.6 4.6E+02 0.0099 24.3 8.9 112 118-234 3-122 (298)
171 TIGR01610 phage_O_Nterm phage 29.6 17 0.00036 27.2 -0.1 34 11-46 44-77 (95)
172 KOG0174 20S proteasome, regula 29.5 28 0.0006 29.6 1.1 42 320-361 147-189 (224)
173 cd01485 E1-1_like Ubiquitin ac 29.5 3.6E+02 0.0078 23.0 9.8 37 195-232 108-144 (198)
174 TIGR02607 antidote_HigA addict 29.3 15 0.00033 25.9 -0.4 19 15-33 19-37 (78)
175 PRK06728 aspartate-semialdehyd 29.2 5E+02 0.011 24.6 13.1 145 119-291 6-157 (347)
176 PF13560 HTH_31: Helix-turn-he 28.7 13 0.00028 25.3 -0.8 18 15-32 15-32 (64)
177 PF06056 Terminase_5: Putative 28.4 21 0.00044 24.1 0.1 18 15-32 14-31 (58)
178 PF07453 NUMOD1: NUMOD1 domain 28.2 19 0.00041 21.5 -0.0 22 11-32 13-34 (37)
179 cd00092 HTH_CRP helix_turn_hel 28.2 5.6 0.00012 27.1 -2.8 28 15-44 26-53 (67)
180 TIGR01296 asd_B aspartate-semi 28.2 5.1E+02 0.011 24.4 11.1 87 197-291 58-152 (339)
181 PF13808 DDE_Tnp_1_assoc: DDE_ 26.8 2.6E+02 0.0056 20.5 6.9 54 323-376 22-75 (90)
182 PF02571 CbiJ: Precorrin-6x re 26.8 65 0.0014 28.9 3.1 29 271-299 117-145 (249)
183 PF01047 MarR: MarR family; I 26.6 4.9 0.00011 26.8 -3.3 30 15-46 18-47 (59)
184 cd01483 E1_enzyme_family Super 26.5 3.3E+02 0.0071 21.6 9.0 36 195-231 84-119 (143)
185 PF14272 Gly_rich_SFCGS: Glyci 26.4 44 0.00096 24.9 1.6 41 105-145 10-51 (115)
186 PF12844 HTH_19: Helix-turn-he 26.3 15 0.00034 24.8 -0.8 19 15-33 13-31 (64)
187 PF13545 HTH_Crp_2: Crp-like h 26.0 17 0.00036 25.5 -0.7 22 14-35 28-49 (76)
188 cd01492 Aos1_SUMO Ubiquitin ac 26.0 4.2E+02 0.0091 22.6 9.7 36 196-232 106-141 (197)
189 cd04726 KGPDC_HPS 3-Keto-L-gul 25.9 1.1E+02 0.0025 25.9 4.4 55 199-253 76-132 (202)
190 smart00345 HTH_GNTR helix_turn 25.7 20 0.00044 23.4 -0.3 30 13-44 19-48 (60)
191 PF10678 DUF2492: Protein of u 25.5 1.7E+02 0.0037 21.1 4.4 34 111-144 27-60 (78)
192 PF08279 HTH_11: HTH domain; 25.4 19 0.00041 23.5 -0.5 22 15-36 16-37 (55)
193 PRK11512 DNA-binding transcrip 25.1 16 0.00035 29.6 -1.1 31 14-46 54-84 (144)
194 PRK12595 bifunctional 3-deoxy- 25.0 2.6E+02 0.0057 26.6 7.0 80 213-294 169-264 (360)
195 TIGR03128 RuMP_HxlA 3-hexulose 24.8 1.6E+02 0.0035 25.2 5.2 56 199-254 75-133 (206)
196 PRK09726 antitoxin HipB; Provi 24.7 21 0.00045 26.2 -0.4 18 15-32 26-43 (88)
197 PF12802 MarR_2: MarR family; 24.7 5.7 0.00012 26.7 -3.3 30 15-46 22-51 (62)
198 PRK08359 transcription factor; 24.3 22 0.00047 30.1 -0.4 19 15-33 99-117 (176)
199 PF09702 Cas_Csa5: CRISPR-asso 24.2 53 0.0012 24.9 1.7 15 362-376 70-84 (105)
200 PF07022 Phage_CI_repr: Bacter 24.1 12 0.00026 25.9 -1.7 19 14-32 12-30 (66)
201 COG1618 Predicted nucleotide k 24.0 4.4E+02 0.0095 22.2 9.6 104 131-235 20-139 (179)
202 PRK13601 putative L7Ae-like ri 24.0 2E+02 0.0044 20.8 4.7 34 199-232 23-56 (82)
203 COG1433 Uncharacterized conser 23.8 1.1E+02 0.0023 24.2 3.4 42 101-147 48-89 (121)
204 COG1510 Predicted transcriptio 23.6 36 0.00078 28.5 0.8 17 17-33 44-60 (177)
205 PRK13384 delta-aminolevulinic 23.4 2E+02 0.0042 26.8 5.5 152 67-235 112-276 (322)
206 PRK13730 conjugal transfer pil 23.4 1.5E+02 0.0032 25.7 4.4 31 203-233 93-123 (212)
207 PHA02591 hypothetical protein; 23.3 23 0.00049 25.3 -0.4 19 14-32 59-77 (83)
208 smart00550 Zalpha Z-DNA-bindin 23.3 8.8 0.00019 26.7 -2.5 30 15-46 23-52 (68)
209 COG0541 Ffh Signal recognition 22.9 1.4E+02 0.003 29.2 4.6 75 211-291 167-248 (451)
210 COG2197 CitB Response regulato 22.9 13 0.00028 32.5 -2.1 24 13-36 162-185 (211)
211 PF04552 Sigma54_DBD: Sigma-54 22.8 28 0.00061 28.9 0.0 34 14-47 49-82 (160)
212 COG2117 Predicted subunit of t 22.6 2.8E+02 0.006 23.2 5.6 52 100-151 5-58 (198)
213 PF13309 HTH_22: HTH domain 22.5 26 0.00057 24.0 -0.2 14 18-31 46-59 (64)
214 PRK14106 murD UDP-N-acetylmura 22.5 1.9E+02 0.0041 28.2 5.8 43 103-146 13-55 (450)
215 COG2876 AroA 3-deoxy-D-arabino 22.0 4.5E+02 0.0098 23.9 7.3 85 213-301 96-195 (286)
216 cd00851 MTH1175 This uncharact 21.9 1.2E+02 0.0026 22.4 3.4 38 105-147 50-87 (103)
217 TIGR03278 methan_mark_10 putat 21.7 6.2E+02 0.014 24.6 8.9 52 214-265 90-151 (404)
218 PRK03573 transcriptional regul 21.7 25 0.00055 28.3 -0.5 30 15-46 47-76 (144)
219 TIGR01362 KDO8P_synth 3-deoxy- 21.4 4.1E+02 0.0088 24.0 6.9 76 213-290 60-150 (258)
220 PF02579 Nitro_FeMo-Co: Dinitr 21.4 45 0.00097 24.3 0.9 42 101-147 36-77 (94)
221 COG3033 TnaA Tryptophanase [Am 21.2 1.3E+02 0.0028 28.7 3.9 39 213-259 206-244 (471)
222 PF09314 DUF1972: Domain of un 20.9 1.7E+02 0.0036 25.0 4.3 36 201-236 93-128 (185)
223 cd02752 MopB_Formate-Dh-Na-lik 20.8 7.6E+02 0.017 25.7 9.8 84 196-282 165-267 (649)
224 TIGR03853 matur_matur probable 20.7 2.4E+02 0.0053 20.2 4.3 35 110-144 24-58 (77)
225 COG1709 Predicted transcriptio 20.5 53 0.0012 28.6 1.2 29 15-44 41-69 (241)
226 COG1921 SelA Selenocysteine sy 20.5 1.3E+02 0.0029 28.9 4.0 41 216-256 177-222 (395)
227 cd01948 EAL EAL domain. This d 20.5 4.5E+02 0.0098 22.5 7.4 49 215-263 134-183 (240)
228 PF03853 YjeF_N: YjeF-related 20.5 1.3E+02 0.0028 25.1 3.5 45 102-146 36-83 (169)
229 PRK13602 putative ribosomal pr 20.4 2.2E+02 0.0048 20.5 4.3 32 200-231 27-58 (82)
230 PRK13396 3-deoxy-7-phosphohept 20.4 3.4E+02 0.0075 25.8 6.7 79 213-293 152-246 (352)
231 PF13518 HTH_28: Helix-turn-he 20.3 36 0.00078 21.6 0.1 18 16-33 14-31 (52)
232 COG1435 Tdk Thymidine kinase [ 20.1 5.6E+02 0.012 22.2 7.2 31 201-231 83-115 (201)
233 TIGR03577 EF_0830 conserved hy 20.1 69 0.0015 23.9 1.6 41 105-145 10-51 (115)
234 PRK13698 plasmid-partitioning 20.0 30 0.00066 32.2 -0.4 22 15-36 177-198 (323)
No 1
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=5.4e-50 Score=376.65 Aligned_cols=306 Identities=29% Similarity=0.453 Sum_probs=266.4
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+|+|++++|+++.++++|.++.....+.....+||++.|+|++|++||.++.++|.+|+|.+|+.+++.|++.||+
T Consensus 15 ~~~vlviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~~GI~ 94 (326)
T PTZ00292 15 EPDVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKRNGVN 94 (326)
T ss_pred CCCEEEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHHcCCC
Confidence 67899999999999999999999999888888899999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEe-cCCCeeEEEECCCCCCCCCcCcCchhHHHHhh-cCEEEEccCCCHHHHHHHHHHHHh
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQ-SDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKK-AGIVLLQREIPDSVNIQVAKAARS 224 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~a~~ 224 (377)
++++... ++.+|+.++++++ .+|+++++.+++++....+..+. ...+.+.. ++++++++..+.+...++++.+++
T Consensus 95 ~~~~~~~--~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~ 171 (326)
T PTZ00292 95 TSFVSRT--ENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVD-AQTDNIQNICKYLICQNEIPLETTLDALKEAKE 171 (326)
T ss_pred hhhEEEc--CCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHH-HHHHHhhhhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 9999877 6778999999998 78999998887765443322222 12244667 899999887777778889999999
Q ss_pred CCCcEEEcCCCCCC----CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEE
Q 017101 225 AGVPVIFDAGGMDA----PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFV 300 (377)
Q Consensus 225 ~g~~v~~D~~~~~~----~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~ 300 (377)
.|+++++|++.... .....+++++|++++|++|++.+++....+.++..++++.+.+.+++.|++|+|++|++++.
T Consensus 172 ~g~~v~~D~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~ 251 (326)
T PTZ00292 172 RGCYTVFNPAPAPKLAEVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIITLGANGCLIVE 251 (326)
T ss_pred cCCEEEEECCCCccccccccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCeEEEEeCCCcEEEEe
Confidence 99999999986533 35678889999999999999999987655556677778888888999999999999998876
Q ss_pred eCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 301 EGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 301 ~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
.++..+++|++ ..+++|||||||+|+|||++++++|+++++|+++|+++|++++++.|+.+++|+.+++++.+++
T Consensus 252 ~~~~~~~~~~~-~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~a~Aa~~v~~~G~~~~~~~~~~~~~~~~~ 326 (326)
T PTZ00292 252 KENEPVHVPGK-RVKAVDTTGAGDCFVGSMAYFMSRGKDLKESCKRANRIAAISVTRHGTQSSYPHPSELPADVKE 326 (326)
T ss_pred CCCceEEccCC-ccccCCCcchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHHHhcC
Confidence 65545778876 5789999999999999999999999999999999999999999999999889999999987753
No 2
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=3.6e-50 Score=374.73 Aligned_cols=303 Identities=34% Similarity=0.546 Sum_probs=265.0
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|++|+|+|++++|+++.++++|.++..+...+....+||++.|+|++|++||.++.++|.+|+|..|+.+++.|++.||+
T Consensus 2 m~~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~ 81 (306)
T PRK11142 2 MGKLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGID 81 (306)
T ss_pred CCcEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCC
Confidence 45799999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g 226 (377)
++++... ++.+|+.++++++.+|+|++..+.+++....+..+. ...+.+..++++++++..+.+...++++.++++|
T Consensus 82 ~~~i~~~--~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~g 158 (306)
T PRK11142 82 TAPVSVI--KGESTGVALIFVNDEGENSIGIHAGANAALTPALVE-AHRELIANADALLMQLETPLETVLAAAKIAKQHG 158 (306)
T ss_pred hhhEEEc--CCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHH-HHHhhhccCCEEEEeCCCCHHHHHHHHHHHHHcC
Confidence 9999887 778899999999989999998887754332222221 1235578999999988777778888999999999
Q ss_pred CcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeE
Q 017101 227 VPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPI 306 (377)
Q Consensus 227 ~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~ 306 (377)
+++++|++.. ......+++++|++++|++|++.+++....+.++..++++.+.+.|++.+++|+|++|++++.++ +.+
T Consensus 159 ~~v~~d~~~~-~~~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~-~~~ 236 (306)
T PRK11142 159 TKVILNPAPA-RELPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENG-EGQ 236 (306)
T ss_pred CEEEEECCCC-cccCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEEECCCcEEEEeCC-cce
Confidence 9999999753 23446789999999999999999998765555667778888888899999999999999776544 467
Q ss_pred EeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHh
Q 017101 307 KQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 307 ~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
++|++ .++++|||||||+|.|||++++++|+++++|+++|+++|+.+|++.|+.+++|++++++++++
T Consensus 237 ~~~~~-~v~vvDt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~~~~~ 304 (306)
T PRK11142 237 RVPGF-RVQAVDTIAAGDTFNGALVTALLEGKPLPEAIRFAHAAAAIAVTRKGAQPSIPWREEIDAFLQ 304 (306)
T ss_pred eccCC-CcccccCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCcccccCCCHHHHHHHHh
Confidence 78876 578999999999999999999999999999999999999999999999988999999998875
No 3
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=5.1e-50 Score=381.58 Aligned_cols=338 Identities=24% Similarity=0.289 Sum_probs=270.2
Q ss_pred ceecchHHHhhcCCCCccceeeeeccCCcchhhhhhhhccccCCCCCCCCCCCCCCEEEEccceeeeeeccC-CCCCCCC
Q 017101 14 LKFQNILAKQLNKPINTIPFHFTITNRQFPAHVIKCQCQRRDQNPVPKNPINTPPPLVVVGSANFDIYVEID-RLPKVGE 92 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viG~~~vD~~~~v~-~~p~~~~ 92 (377)
.++|.|||+.|+++|++|.-++. .|+..|++ .++ .+...+...|+|+|++++|+++.++ ++|.+++
T Consensus 17 ~~s~~~la~~l~~s~~~v~~~i~--~L~~~g~i----~~~-------~~~l~~~~~v~viG~~~vD~~~~~~~~~p~~~~ 83 (362)
T PRK09954 17 LIQQNEIADILQISRSRVAAHIM--DLMRKGRI----KGK-------GYILTEQEYCVVVGAINMDIRGMADIRYPQAAS 83 (362)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH--HHHHCCCc----CCc-------EEEEcCCccEEEEEEEEEEEEEeeCCcCcCCCC
Confidence 58999999999999999988777 66666644 222 2333445699999999999999887 7777665
Q ss_pred eeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCC
Q 017101 93 TVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQ 172 (377)
Q Consensus 93 ~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~ 172 (377)
........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+++++... ++.+|+.++++.+++++
T Consensus 84 --~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~--~~~~T~~~~~~~~~~~~ 159 (362)
T PRK09954 84 --HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRL--HGQSTSTYLAIANRQDE 159 (362)
T ss_pred --CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHHcCCCccceEEc--CCCCCeEEEEEEcCCCC
Confidence 34566788999999999999999999999999999999999999999999999999887 77789988887776554
Q ss_pred eeEEEECCCCCCCCCcCcCch----hHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCC-CCChhhhhcc
Q 017101 173 NSIIIVGGTNMSCWPEKFGDE----DLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD-APIPQELLNF 247 (377)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-~~~~~~ll~~ 247 (377)
+++...+.... ..+.++ ..+.+..+++++++...+.+....+++.+ +++++++|+.+.. .....+++++
T Consensus 160 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a--~~~~v~~D~~~~~~~~~~~~~l~~ 233 (362)
T PRK09954 160 -TVLAINDTHIL---QQLTPQLLNGSRDLIRHAGVVLADCNLTAEALEWVFTLA--DEIPVFVDTVSEFKAGKIKHWLAH 233 (362)
T ss_pred -EEEEEcCchhh---hcCCHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHhC--CCCcEEEECCCHHHhhhhhhhhcc
Confidence 44444332211 123322 22446789999998888877766666655 4799999997542 1235678999
Q ss_pred CceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHH
Q 017101 248 IDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFT 327 (377)
Q Consensus 248 ~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ 327 (377)
+|++++|++|++.++|....+.++..++++.+.+.|++.||||+|++|++++..++..+++|++ ++++||||||||+|+
T Consensus 234 ~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~-~v~vvDttGAGDaF~ 312 (362)
T PRK09954 234 IHTLKPTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTAP-AHTTVDSFGADDGFM 312 (362)
T ss_pred ccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEeccCC-CcccccccchHHHHH
Confidence 9999999999999998765555567778888889999999999999999776655555666766 578999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcc-cCCCCCCCCHHHHHHHHhh
Q 017101 328 ASFAVGFVEGKSREECLRFAAAAASLCVQV-KGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 328 ag~l~~l~~g~~l~~al~~a~~aAa~~~~~-~G~~~~~p~~e~i~~~l~~ 376 (377)
|||++++++|+++++|+++|+++|++++.. .+..|. .+.+.++++++.
T Consensus 313 Ag~l~~l~~g~~~~eal~~a~a~Aal~~~s~~~~~~~-~~~~~~~~~~~~ 361 (362)
T PRK09954 313 AGLVYSFLEGYSFRDSARFAMACAAISRASGSLNNPT-LSADNALSLVPM 361 (362)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcCCCc-CCHHHHHHHhcc
Confidence 999999999999999999999999999664 444444 588888888764
No 4
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=8e-48 Score=356.54 Aligned_cols=292 Identities=42% Similarity=0.644 Sum_probs=256.3
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+|+|+|++++|++..++++|..+..........++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLREEGIDVS 80 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHHcCCCce
Confidence 59999999999999999988888888888889999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCc
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 228 (377)
++... ++.+|+.++++++++|+|+++.+.+++....+..+ +...+.+..++++++++..+.+....+++.++++|.+
T Consensus 81 ~~~~~--~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~ 157 (292)
T cd01174 81 YVEVV--VGAPTGTAVITVDESGENRIVVVPGANGELTPADV-DAALELIAAADVLLLQLEIPLETVLAALRAARRAGVT 157 (292)
T ss_pred EEEEc--CCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHH-HHHHHhcccCCEEEEeCCCCHHHHHHHHHHHHhcCCE
Confidence 99776 67799999999998899999888766543222222 2233567899999999888888888999999999999
Q ss_pred EEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEe
Q 017101 229 VIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQ 308 (377)
Q Consensus 229 v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~ 308 (377)
+++|++... .....+++++|++++|++|++.+++....+.+++.++++.+.+.|++.+++|+|++|++++..+ ..+++
T Consensus 158 v~~D~~~~~-~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~-~~~~~ 235 (292)
T cd01174 158 VILNPAPAR-PLPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKGALLASGG-EVEHV 235 (292)
T ss_pred EEEeCCCcC-cCcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCceEEEeCC-ceEEe
Confidence 999998653 2347889999999999999999998776666677788888889999999999999999877654 46677
Q ss_pred ccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 017101 309 SIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPD 366 (377)
Q Consensus 309 ~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~ 366 (377)
|++ ..+++||+||||+|+|||++++++|+++++|+++|+++|+.++++.|+.+++|+
T Consensus 236 ~~~-~~~~vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~ 292 (292)
T cd01174 236 PAF-KVKAVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAAALSVTRPGAQPSIPT 292 (292)
T ss_pred cCC-CcccCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence 776 578999999999999999999999999999999999999999999999988885
No 5
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=8.7e-48 Score=359.50 Aligned_cols=305 Identities=23% Similarity=0.295 Sum_probs=250.3
Q ss_pred CCCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCC
Q 017101 65 NTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (377)
Q Consensus 65 ~~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~g 144 (377)
+++++|+|+|++++|++..++.. ..+...........+||++.|+|.++++||.++.++|.+|+|..|+++++.|++.|
T Consensus 2 ~~~~~i~~iG~~~vD~~~~~~~~-~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~~g 80 (313)
T PRK09850 2 REKDYVVIIGSANIDVAGYSHES-LNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSG 80 (313)
T ss_pred CCCCcEEEECcEEEeeeccCCCc-CcCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHHcC
Confidence 45789999999999999886543 33333334456788999999999999999999999999999999999999999999
Q ss_pred CCcccEEeccCCCCCCceEEEEEecCCCeeEEEEC-CCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHH
Q 017101 145 VRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG-GTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAAR 223 (377)
Q Consensus 145 Vd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (377)
|+++++... ++.+|+.++++++++|++++.+.. +.........+ +...+.++.++++++++..+.+....+++.+
T Consensus 81 Vd~~~~~~~--~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~- 156 (313)
T PRK09850 81 VYVDKCLIV--PGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYL-AQHREFIQRAKVIVADCNISEEALAWILDNA- 156 (313)
T ss_pred CCchheeec--CCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHH-HHHHHHHhcCCEEEEeCCCCHHHHHHHHHhc-
Confidence 999998877 777899999999999999876542 22111111111 1123457889999998887777766666643
Q ss_pred hCCCcEEEcCCCCCC-CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeC
Q 017101 224 SAGVPVIFDAGGMDA-PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEG 302 (377)
Q Consensus 224 ~~g~~v~~D~~~~~~-~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 302 (377)
.++++++|++..+. ....++++++|++++|++|++.++|....+.+++.++++.+.+.|++.+|||+|++|++++..+
T Consensus 157 -~g~~v~~D~~~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 235 (313)
T PRK09850 157 -ANVPVFVDPVSAWKCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDIS 235 (313)
T ss_pred -cCCCEEEEcCCHHHHHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEcCC
Confidence 58899999986431 2346778899999999999999998765556677888888888899999999999999877655
Q ss_pred CeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 303 EKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 303 ~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
++..++|++ .+++||||||||+|+|||+++|.+|+++++|+++|+++|+.+++..+..+..|+.+++++++++
T Consensus 236 ~~~~~~~~~-~~~vvDttGAGDaF~agfi~~l~~g~~~~eal~~a~a~aa~~~~~~~~~~~~~~~~~~~~~~~~ 308 (313)
T PRK09850 236 GESGWSAPI-KTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVEN 308 (313)
T ss_pred CCeEecCCC-CcccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCcccCHHHHHHHHHH
Confidence 545567776 5789999999999999999999999999999999999999999999999999999999999864
No 6
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=5.5e-47 Score=369.82 Aligned_cols=305 Identities=22% Similarity=0.271 Sum_probs=250.2
Q ss_pred CCCCCCCCEEEEccceeeeeeccCCCCCCCCeee-----------eCcceecCCChHHHHHHHHHHcCCCceEEEEecCC
Q 017101 62 NPINTPPPLVVVGSANFDIYVEIDRLPKVGETVA-----------AKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGED 130 (377)
Q Consensus 62 ~~~~~~~~I~viG~~~vD~~~~v~~~p~~~~~~~-----------~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D 130 (377)
....++++|+++|++++|+++.++++|.+++... .......+|| ++|+|+++++||.++.++|.+|+|
T Consensus 67 ~~~~~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D 145 (470)
T PLN02341 67 SAAGKEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDE 145 (470)
T ss_pred ccccccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCc
Confidence 3345578999999999999999999998876422 1234456788 699999999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCcccEEeccCC--------CCCCceEEEEEecCCCeeEEEECCCCCCCC---CcCcCchhHHHHh
Q 017101 131 ANGKLITDALSGCGVRLDYMNVVKDG--------GVPTGHAVVMLQSDGQNSIIIVGGTNMSCW---PEKFGDEDLEVVK 199 (377)
Q Consensus 131 ~~G~~i~~~l~~~gVd~~~v~~~~~~--------~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~l~~~~~~~l~ 199 (377)
.+|+++++.|++.||+++++... + ..+|+.++++++++|++.+....+...... ...+.+...+.++
T Consensus 146 ~~G~~i~~~L~~~GVd~~~v~~~--~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 223 (470)
T PLN02341 146 IYGKFLLDVLAEEGISVVGLIEG--TDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIR 223 (470)
T ss_pred HHHHHHHHHHHHcCCeeeEEEec--CccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhh
Confidence 99999999999999999998775 3 357999999999889887654332211110 1122333446788
Q ss_pred hcCEEEEccC----CCHHHHHHHHHHHHhCCCcEEEcCCCCCC----------CChhhhhccCceeccCHHHHhhccCCC
Q 017101 200 KAGIVLLQRE----IPDSVNIQVAKAARSAGVPVIFDAGGMDA----------PIPQELLNFIDILSPNESELGRLTGMP 265 (377)
Q Consensus 200 ~~~~~~~~~~----~~~~~~~~~~~~a~~~g~~v~~D~~~~~~----------~~~~~ll~~~dvl~~N~~E~~~l~g~~ 265 (377)
.++++++++. .+.+.+..+++.+++.|++|++|++.... .....+++++|++++|++|++.++|..
T Consensus 224 ~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~ 303 (470)
T PLN02341 224 QSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIR 303 (470)
T ss_pred cCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCC
Confidence 9999999874 45677889999999999999999976421 124678899999999999999999863
Q ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHH
Q 017101 266 TDSYEQISEAVVKCHKMG--VQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREEC 343 (377)
Q Consensus 266 ~~~~~~~~~~~~~l~~~g--~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~a 343 (377)
+..++++.+.+.+ .+.||||+|++|++++..+ ..+++|++ .+++||||||||+|+|||++++++|+++++|
T Consensus 304 -----~~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~-~~~~vpa~-~v~vVDTtGAGDaF~Agfl~gll~G~~l~ea 376 (470)
T PLN02341 304 -----NPILAGQELLRPGIRTKWVVVKMGSKGSILVTRS-SVSCAPAF-KVNVVDTVGCGDSFAAAIALGYIHNLPLVNT 376 (470)
T ss_pred -----CHHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECC-eeEEeCCC-CcCCCCCcCccHHHHHHHHHHHHcCCCHHHH
Confidence 3456667777666 5899999999999887655 46778876 6789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 344 LRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 344 l~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
+++|+++|++++++.|+..++|++++++++|++
T Consensus 377 l~~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~ 409 (470)
T PLN02341 377 LTLANAVGAATAMGCGAGRNVATLEKVLELLRA 409 (470)
T ss_pred HHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHh
Confidence 999999999999999999999999999999875
No 7
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=2.6e-47 Score=364.57 Aligned_cols=320 Identities=19% Similarity=0.241 Sum_probs=255.0
Q ss_pred cCCcchhhhhhhhccccCCCCCCCCCCCCCCEEEEccceeeeeeccCC-------CCCCCCeeeeCc-------------
Q 017101 39 NRQFPAHVIKCQCQRRDQNPVPKNPINTPPPLVVVGSANFDIYVEIDR-------LPKVGETVAAKT------------- 98 (377)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viG~~~vD~~~~v~~-------~p~~~~~~~~~~------------- 98 (377)
.-.+..||||++.+++...+++....+++-+|+++|++.+|+...++. +++.+......+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~ 84 (434)
T PRK15074 5 GQRKSKHYFPVNARDPLLQQIQPENETSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNN 84 (434)
T ss_pred cccccccccccCCCCccccccccccCCCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhcc
Confidence 334444999999999998888777777788999999999999998753 333333222111
Q ss_pred --ceecCCChHHHHHHHHHHcC-CCceEEEEecCC-ccHHHHHHHHH--hCCCCcccEEeccCCCCCCceEEEEEecCCC
Q 017101 99 --SQTLAGGKGANQAACGAKLS-HPTYFVGQVGED-ANGKLITDALS--GCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQ 172 (377)
Q Consensus 99 --~~~~~GG~~~NvA~~la~LG-~~v~li~~vG~D-~~G~~i~~~l~--~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~ 172 (377)
....+||++.|+|+++++|| .++.++|.||+| .+|+++++.|+ +.||+++++... + .+|+.++++++++|+
T Consensus 85 ~~~~~~~GGsaaNtA~~lArLGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~--~-~~TG~~~VlV~~dGe 161 (434)
T PRK15074 85 LITHEFAGGTIGNTLHNYSVLADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGV--D-GPIGRCFTLISEDGE 161 (434)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEc--C-CCCEEEEEEECCCCC
Confidence 24569999999999999996 999999999999 79999999997 689999998764 4 489999999999999
Q ss_pred eeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCC--------CHHHHHHHHHHHHhCCCcEEEcCCCCCC------
Q 017101 173 NSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI--------PDSVNIQVAKAARSAGVPVIFDAGGMDA------ 238 (377)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~a~~~g~~v~~D~~~~~~------ 238 (377)
|+++.+.+++....++.+. .+.+..++++++++.. ..++...+++.|++.|++|++|++....
T Consensus 162 Rt~~t~~GA~~~Lt~edld---~~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~ 238 (434)
T PRK15074 162 RTFAISPGHMNQLRPESIP---EDVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQ 238 (434)
T ss_pred EEEEEecChhhcCChhHCC---HhHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHH
Confidence 9999998887665555444 2568899999998743 2467788999999999999999986421
Q ss_pred CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCC------ee-------
Q 017101 239 PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGE------KP------- 305 (377)
Q Consensus 239 ~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~------~~------- 305 (377)
.+...+++++|++++|++|+..++|.. +..++++.+.+ +++.|+||+|++|++++..++ ..
T Consensus 239 ~~~e~l~~~vDILf~NeeEa~~LtG~~-----d~eea~~~L~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~ 312 (434)
T PRK15074 239 WWQEFLKEHVSILAMNEDEAEALTGES-----DPLLASDKALD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGA 312 (434)
T ss_pred HHHHHHHhcCCEEEcCHHHHHHHhCCC-----CHHHHHHHHHc-CCCEEEEEECCCCEEEEecccccccCceeeeccccc
Confidence 122345679999999999999999853 33455566654 478999999999998754222 11
Q ss_pred -------------------------EEeccCC--CCcccCccCchHHHHHHHHHHHhCCC--------------------
Q 017101 306 -------------------------IKQSIIP--AARVIDTTGAGDTFTASFAVGFVEGK-------------------- 338 (377)
Q Consensus 306 -------------------------~~~~~~~--~~~vvdttGAGDaF~ag~l~~l~~g~-------------------- 338 (377)
.++|+++ ++++||||||||+|.|||+|+|.+|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~ 392 (434)
T PRK15074 313 IAEFNRYEFSRAMRKKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYS 392 (434)
T ss_pred cccccchhcccchhccccccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccC
Confidence 2666652 56899999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHhcccCC--CCCCCCHHHH
Q 017101 339 SREECLRFAAAAASLCVQVKGA--IPSMPDRKSV 370 (377)
Q Consensus 339 ~l~~al~~a~~aAa~~~~~~G~--~~~~p~~e~i 370 (377)
++++|+++|+++|+.++++.|+ .+++|++++-
T Consensus 393 ~l~~~~~~~~~~a~~vi~~~G~~~~~~~p~~~~~ 426 (434)
T PRK15074 393 SLAQVCKYANRVSYEVLNQHSPRLSRGLPEREDS 426 (434)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccch
Confidence 8999999999999999999999 5578887654
No 8
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=9.3e-47 Score=363.16 Aligned_cols=304 Identities=22% Similarity=0.253 Sum_probs=252.3
Q ss_pred CCCCCCCCCEEEEccceeeeeeccCC-------CCCCC-------------CeeeeCcceecCCChHHHHHHHHHHcC--
Q 017101 61 KNPINTPPPLVVVGSANFDIYVEIDR-------LPKVG-------------ETVAAKTSQTLAGGKGANQAACGAKLS-- 118 (377)
Q Consensus 61 ~~~~~~~~~I~viG~~~vD~~~~v~~-------~p~~~-------------~~~~~~~~~~~~GG~~~NvA~~la~LG-- 118 (377)
-....++.+|+++|++++|+...+++ +|+++ +++........+||++.|+|+++++||
T Consensus 63 ~~~~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~AvalarLG~~ 142 (426)
T PLN02813 63 EKAVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALARLGSQ 142 (426)
T ss_pred cccCCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHHhccc
Confidence 34445688999999999999999998 99888 334555677899999999999999999
Q ss_pred ------CCceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc
Q 017101 119 ------HPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD 192 (377)
Q Consensus 119 ------~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 192 (377)
.++.++|.+|+|.+|+++++.|++.||++.++... +.+|+.++++++++|+|+++.+.+++.......
T Consensus 143 ~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~---~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~--- 216 (426)
T PLN02813 143 SAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVK---DGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDS--- 216 (426)
T ss_pred cccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecC---CCCceEEEEEEcCCCCceeeeccCchhhCCccc---
Confidence 79999999999999999999999999999887653 458999999999999999999888765433222
Q ss_pred hhHHHHhhcCEEEEccC---CCH--HHHHHHHHHHHhCCCcEEEcCCCCC-----C-CChhhhhccCceeccCHHHHhhc
Q 017101 193 EDLEVVKKAGIVLLQRE---IPD--SVNIQVAKAARSAGVPVIFDAGGMD-----A-PIPQELLNFIDILSPNESELGRL 261 (377)
Q Consensus 193 ~~~~~l~~~~~~~~~~~---~~~--~~~~~~~~~a~~~g~~v~~D~~~~~-----~-~~~~~ll~~~dvl~~N~~E~~~l 261 (377)
...+.++.++++++++. .+. +.+.++++.+++.|+++++|++... + .+.+.+++++|++++|++|+..+
T Consensus 217 ~~~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l 296 (426)
T PLN02813 217 CLASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARAL 296 (426)
T ss_pred cCHHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHH
Confidence 23466889999999873 332 5677889999999999999987531 1 12344568999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCC-CH
Q 017101 262 TGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGK-SR 340 (377)
Q Consensus 262 ~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~-~l 340 (377)
++.... ++..++++.+. .+++.||||+|++|++++.. ++.+++|++ ++++||||||||+|+|||++++++|+ ++
T Consensus 297 ~g~~~~--~~~~~a~~~L~-~~~~~VVVT~G~~Ga~~~~~-~~~~~~pa~-~v~vVDTtGAGDAF~Agfl~~l~~G~~~l 371 (426)
T PLN02813 297 CGLGSE--ESPESATRYLS-HFCPLVSVTDGARGSYIGVK-GEAVYIPPS-PCVPVDTCGAGDAYAAGILYGLLRGVSDL 371 (426)
T ss_pred hCCCCC--CCHHHHHHHHH-cCCCEEEEEeCCCCeEEEEC-CEEEEeCCC-CCCcccCCChHHHHHHHHHHHHHcCCCCH
Confidence 886422 23445555554 57899999999999977654 457788887 57899999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHh
Q 017101 341 EECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 341 ~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
++|+++|+++|+++|++.|+..++|+.+++.+.+.
T Consensus 372 ~~al~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~ 406 (426)
T PLN02813 372 RGMGELAARVAATVVGQQGTRLRVEDAVELAESFA 406 (426)
T ss_pred HHHHHHHHHHHHHHHcccCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765
No 9
>PLN02323 probable fructokinase
Probab=100.00 E-value=4e-46 Score=350.91 Aligned_cols=300 Identities=25% Similarity=0.360 Sum_probs=243.0
Q ss_pred CCCCCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHh
Q 017101 63 PINTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSG 142 (377)
Q Consensus 63 ~~~~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~ 142 (377)
...++++|+++|++++|++..+++.|. ........++||++.|+|+++++||.++.++|.+|+|.+|+++++.|++
T Consensus 6 ~~~~~~~i~~iG~~~vD~~~~~~~~~~----~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~ 81 (330)
T PLN02323 6 STAESSLVVCFGEMLIDFVPTVSGVSL----AEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKK 81 (330)
T ss_pred ccCCCCcEEEechhhhhhccCCCCCCc----ccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHH
Confidence 344578899999999999987766543 2234557899999999999999999999999999999999999999999
Q ss_pred CCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEEC--CCCCCCCCcCcCchhHHHHhhcCEEEEccCC-----CHHHH
Q 017101 143 CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG--GTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVN 215 (377)
Q Consensus 143 ~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-----~~~~~ 215 (377)
.||+++++.+. ++.+|+.+++.++++|+|++..+. +++....++.+. .+.+..++++++.+.. .....
T Consensus 82 ~GI~~~~v~~~--~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (330)
T PLN02323 82 NGVNNEGVRFD--PGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELD---LDLIRKAKIFHYGSISLITEPCRSAH 156 (330)
T ss_pred cCCCCcceEEc--CCCCceEEEEEECCCCceeEEeecCCchhccCChHHCC---hHHHccCCEEEEechhccCchHHHHH
Confidence 99999999887 777899999999889999988764 333233323332 2457788888776532 12345
Q ss_pred HHHHHHHHhCCCcEEEcCCCCCCC---------ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCE
Q 017101 216 IQVAKAARSAGVPVIFDAGGMDAP---------IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQ 286 (377)
Q Consensus 216 ~~~~~~a~~~g~~v~~D~~~~~~~---------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~ 286 (377)
..+++.+++.|.+|++|++.+... ...++++++|++++|++|+..++|....+.++ .. .++..|++.
T Consensus 157 ~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~---~~-~~~~~g~~~ 232 (330)
T PLN02323 157 LAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDT---VV-KLWHPNLKL 232 (330)
T ss_pred HHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHH---HH-HHHhcCCCE
Confidence 678889999999999999754211 23467889999999999999999865433222 22 444568999
Q ss_pred EEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHhcccC
Q 017101 287 VLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKS-------REECLRFAAAAASLCVQVKG 359 (377)
Q Consensus 287 vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~-------l~~al~~a~~aAa~~~~~~G 359 (377)
+|||+|++|++++..+ ..+++|++ +++++|||||||+|+|||++++++|++ +++|+++|+++|+++|++.|
T Consensus 233 vvvt~G~~G~~~~~~~-~~~~~~~~-~v~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~a~a~Aa~~v~~~g 310 (330)
T PLN02323 233 LLVTEGEEGCRYYTKD-FKGRVEGF-KVKAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFANACGAITTTERG 310 (330)
T ss_pred EEEecCCCceEEEeCC-CceEeCCc-cCCCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999877655 45678876 578999999999999999999999986 89999999999999999999
Q ss_pred CCCCCCCHHHHHHHHhhC
Q 017101 360 AIPSMPDRKSVLNLLQYA 377 (377)
Q Consensus 360 ~~~~~p~~e~i~~~l~~~ 377 (377)
+.+++|++++++++++++
T Consensus 311 ~~~~~~~~~~v~~~l~~~ 328 (330)
T PLN02323 311 AIPALPTKEAVLKLLKKA 328 (330)
T ss_pred CccCCCCHHHHHHHHHHh
Confidence 998899999999998864
No 10
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=337.32 Aligned_cols=301 Identities=36% Similarity=0.519 Sum_probs=248.5
Q ss_pred CCCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCC
Q 017101 65 NTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (377)
Q Consensus 65 ~~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~g 144 (377)
.+++.|+|+|+.++|++..++++|..+++.....+...+||+++|+|++++|||.++.|+|++|+|.+|+.+.+.|+++|
T Consensus 7 ~~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~~~ 86 (330)
T KOG2855|consen 7 GEPPLVVVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQNG 86 (330)
T ss_pred cCCceEEEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhhCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHH----
Q 017101 145 VRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK---- 220 (377)
Q Consensus 145 Vd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 220 (377)
|+++++... ++.+|+...+.+..+|++.+.++.+++...++.. .+...+.++.+.++++..+.+.+...+...
T Consensus 87 V~~~~v~~~--~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~-se~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~ 163 (330)
T KOG2855|consen 87 VDTSGVKFD--ENARTACATITVSKDGENRIIFVRGANADMLPED-SELNLEVIKEAKVFHCQSEILIEEPMRSLHIAAV 163 (330)
T ss_pred cccccceec--CCCceEEEEEEEccCCceEEEEEecCchhcCccc-ccccHHHHhhccEEEEeeecCCcchhHHHHHhhh
Confidence 999999998 8999999999999999999999999988876644 566778999999999998776554433333
Q ss_pred -HHHhCCCcEEEcCCCCCCC---------ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 017101 221 -AARSAGVPVIFDAGGMDAP---------IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVK 290 (377)
Q Consensus 221 -~a~~~g~~v~~D~~~~~~~---------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT 290 (377)
.+++.+.-++.||+.+... ....++..+|++...++|+..++|.. .++. . .|++.+.+.||||
T Consensus 164 ~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~---~~~~---~-~L~~~~~k~viVT 236 (330)
T KOG2855|consen 164 KVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIE---DDKI---L-KLWHMKLKLVIVT 236 (330)
T ss_pred hhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCc---cchH---H-HHhccCCCEEEEE
Confidence 4444444445555432110 12234445555555555555555441 1111 2 5777788999999
Q ss_pred eCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCC--CC---HHHHHHHHHHHHHHHhcccCCCCCCC
Q 017101 291 LGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG--KS---REECLRFAAAAASLCVQVKGAIPSMP 365 (377)
Q Consensus 291 ~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g--~~---l~~al~~a~~aAa~~~~~~G~~~~~p 365 (377)
+|++|+.+|+++.+-.++|++ .+++||||||||+|.|||+.+|.+| .+ +++++++|+++++.++++.|++|++|
T Consensus 237 lG~kG~~y~tk~~~~~~v~~~-~V~~VDtTGAGDsFvgal~~~L~~~~~~~~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p 315 (330)
T KOG2855|consen 237 LGEKGCRYYTKDFKGSHVPAF-KVKAVDTTGAGDSFVGALAVQLVRGSLLPELSLEEALRFANACGAITVQRKGAIPSMP 315 (330)
T ss_pred eCCCceEEEecCCCCCCCCCc-ccccccCCCchHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhhHHhhccCCCccCc
Confidence 999999999988655577877 6789999999999999999999999 66 99999999999999999999999999
Q ss_pred CHHHHHHHHhh
Q 017101 366 DRKSVLNLLQY 376 (377)
Q Consensus 366 ~~e~i~~~l~~ 376 (377)
++++++..+..
T Consensus 316 ~~~~~~~~~~~ 326 (330)
T KOG2855|consen 316 TEKEVQSLLKS 326 (330)
T ss_pred cHHHHHHHhhh
Confidence 99999988764
No 11
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=1.5e-45 Score=341.50 Aligned_cols=293 Identities=39% Similarity=0.598 Sum_probs=254.7
Q ss_pred ccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcccEEec
Q 017101 74 GSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVV 153 (377)
Q Consensus 74 G~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~ 153 (377)
|.+++|++..++++|.+++.........++||++.|+|++|++||.++.++|.+|+|..|+.+++.|++.||+++++...
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~ 80 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSNGIDTEYVGTV 80 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHcCCCeeEEEEc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcC
Q 017101 154 KDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (377)
Q Consensus 154 ~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (377)
++.+|++++++++++|+++++.+.+++....+..+. ...+.+..++++++++..+.+.+.++++.++++++++++|+
T Consensus 81 --~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~ 157 (293)
T TIGR02152 81 --KDTPTGTAFITVDDTGENRIVVVAGANAELTPEDID-AAEALIAESDIVLLQLEIPLETVLEAAKIAKKHGVKVILNP 157 (293)
T ss_pred --CCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHH-HHHhhhccCCEEEEecCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 667899999999988999988777654332222222 22346788999999888888888899999999999999999
Q ss_pred CCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCC
Q 017101 234 GGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPA 313 (377)
Q Consensus 234 ~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~ 313 (377)
+.........+++++|++++|++|++.+++....+.+++.+.++.+.++|++.++||+|++|+.++..+ ..++.|++ +
T Consensus 158 ~~~~~~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~-~~~~~~~~-~ 235 (293)
T TIGR02152 158 APAIKDLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVSKD-ESKLIPAF-K 235 (293)
T ss_pred CcCcccchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEEeCCCceEEEeCC-ceeEccCC-C
Confidence 865333447889999999999999999998765555567778888888899999999999999877655 46677765 5
Q ss_pred CcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHH
Q 017101 314 ARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVL 371 (377)
Q Consensus 314 ~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~ 371 (377)
.+++||+||||+|+|||++++++|+++++|+++|+++|+.++++.|+.+.+|++++++
T Consensus 236 ~~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~ 293 (293)
T TIGR02152 236 VKAVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAISVTRKGAQSSIPYLEEVE 293 (293)
T ss_pred CceeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcccCcccCCCChHHcC
Confidence 6899999999999999999999999999999999999999999999998889988764
No 12
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=1e-45 Score=345.57 Aligned_cols=285 Identities=28% Similarity=0.440 Sum_probs=240.4
Q ss_pred CCEEEEccceeeeeeccCCCC------CCCCeeeeC-----------cceecCCChHHHHHHHHHHcCCCceEEEEecCC
Q 017101 68 PPLVVVGSANFDIYVEIDRLP------KVGETVAAK-----------TSQTLAGGKGANQAACGAKLSHPTYFVGQVGED 130 (377)
Q Consensus 68 ~~I~viG~~~vD~~~~v~~~p------~~~~~~~~~-----------~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D 130 (377)
.+|+++|++++|+++.++++| .+++..... .....+||++.|+|++|++||.++.++|.+|+|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D 81 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGDD 81 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 469999999999999999988 556666663 467899999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccC-
Q 017101 131 ANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQRE- 209 (377)
Q Consensus 131 ~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~- 209 (377)
.+|+.+++.|++.||+++++... +.+|+.++++++++|+|+++.+.+++....++.+. .+.+..++++++++.
T Consensus 82 ~~g~~i~~~l~~~GV~~~~~~~~---~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~---~~~l~~~~~v~~~~~~ 155 (312)
T cd01168 82 KLGDFLLKDLRAAGVDTRYQVQP---DGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLD---WSLLAKAKYLYLEGYL 155 (312)
T ss_pred hhHHHHHHHHHHCCCccccccCC---CCCceEEEEEEcCCCceeeecccchhhcCChhHCC---HHHHccCCEEEEEEEe
Confidence 99999999999999999988753 46899999999989999988777665443333342 256889999999874
Q ss_pred --CCHHHHHHHHHHHHhCCCcEEEcCCCCC-----CCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhc
Q 017101 210 --IPDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKM 282 (377)
Q Consensus 210 --~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~ 282 (377)
.+.+....+++.+++.|.++++|++... +....++++++|++++|++|++.+++.+. ++..++++.+.+.
T Consensus 156 ~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~---~~~~~~a~~l~~~ 232 (312)
T cd01168 156 LTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAEAET---TDDLEAALKLLAL 232 (312)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCCC---CChHHHHHHHHhc
Confidence 3447788899999999999999996421 11245788999999999999999998521 2345678888888
Q ss_pred CCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 017101 283 GVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIP 362 (377)
Q Consensus 283 g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~ 362 (377)
+++.+|||+|++|++++..+ +.+++|+++.+++||||||||+|+|||++++++|+++++|+++|+++|+++|++.|+.+
T Consensus 233 g~~~vvvt~G~~G~~~~~~~-~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~~~~a~~~a~~~Aa~~v~~~G~~~ 311 (312)
T cd01168 233 RCRIVVITQGAKGAVVVEGG-EVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGSYAAAEVIQQLGPRL 311 (312)
T ss_pred CCCEEEEecCCCCeEEEECC-EEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999877644 57788877437899999999999999999999999999999999999999999999864
No 13
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=8.6e-45 Score=334.93 Aligned_cols=284 Identities=29% Similarity=0.427 Sum_probs=239.5
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+|+++|++++|++..++++|..++.........++||++.|+|.+|++||.++.++|.+|+|..|+++++.|++.||+++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~ 80 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVDTS 80 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCCcc
Confidence 58999999999999999999988888888899999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCc
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 228 (377)
++... ++.+|+.+++ ...+|+++...+.+.........+.+ ..+..++++++++..+ +...++++.+++.|.+
T Consensus 81 ~~~~~--~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~g~~ 153 (284)
T cd01945 81 FIVVA--PGARSPISSI-TDITGDRATISITAIDTQAAPDSLPD---AILGGADAVLVDGRQP-EAALHLAQEARARGIP 153 (284)
T ss_pred ceeec--CCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCH---HHhCcCCEEEEcCCCH-HHHHHHHHHHHHcCCC
Confidence 99987 6667888766 44567777666655444433334432 3478999999988765 4567789999999998
Q ss_pred EEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEe
Q 017101 229 VIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQ 308 (377)
Q Consensus 229 v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~ 308 (377)
+++|..........++++++|++++|++|++.+++.. +. ++++.+.+.+++.++||+|++|++++..+++.+++
T Consensus 154 v~~~~~~~~~~~~~~~~~~~dil~~n~~e~~~l~~~~-----~~-~~~~~l~~~~~~~vivt~G~~G~~~~~~~~~~~~~ 227 (284)
T cd01945 154 IPLDLDGGGLRVLEELLPLADHAICSENFLRPNTGSA-----DD-EALELLASLGIPFVAVTLGEAGCLWLERDGELFHV 227 (284)
T ss_pred eeEeccCCcccchHHHhccCCEEEeChhHHhhhcCCC-----HH-HHHHHHHhcCCcEEEEEECCCCeEEEcCCCCEEec
Confidence 7776654322225678899999999999999998753 11 56667778899999999999999887635557788
Q ss_pred ccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 017101 309 SIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPD 366 (377)
Q Consensus 309 ~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~ 366 (377)
|++ +++++||+||||+|+|||+++|++|+++++|+++|+++|++++++.|+.+++|+
T Consensus 228 ~~~-~~~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~ 284 (284)
T cd01945 228 PAF-PVEVVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAAALKCRGLGGRAGLPT 284 (284)
T ss_pred CCC-ccccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 877 678999999999999999999999999999999999999999999999988885
No 14
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=2.7e-45 Score=347.01 Aligned_cols=292 Identities=22% Similarity=0.318 Sum_probs=237.5
Q ss_pred CCCCEEEEccceeeeeeccCC------CCCCCCeeeeCcc--------------eecCCChHHHHHHHHHHcC---C-Cc
Q 017101 66 TPPPLVVVGSANFDIYVEIDR------LPKVGETVAAKTS--------------QTLAGGKGANQAACGAKLS---H-PT 121 (377)
Q Consensus 66 ~~~~I~viG~~~vD~~~~v~~------~p~~~~~~~~~~~--------------~~~~GG~~~NvA~~la~LG---~-~v 121 (377)
+.++|+|+|++++|+++.+++ .|..++....++. ...+||++.|+|+++++|| . ++
T Consensus 4 ~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~v 83 (345)
T PTZ00247 4 APKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGFV 83 (345)
T ss_pred CCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCcE
Confidence 468899999999999999986 4788887777654 7899999999999999885 4 89
Q ss_pred eEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchh-HHHHhh
Q 017101 122 YFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDED-LEVVKK 200 (377)
Q Consensus 122 ~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~l~~ 200 (377)
.++|.+|+|.+|+++++.|++.||+++++. . ++.+|+.+++++++ |+|+++.+.+++....++.+.... .+.+..
T Consensus 84 ~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~--~~~~Tg~~~i~v~~-~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~~ 159 (345)
T PTZ00247 84 CYVGCVGDDRFAEILKEAAEKDGVEMLFEY-T--TKAPTGTCAVLVCG-KERSLVANLGAANHLSAEHMQSHAVQEAIKT 159 (345)
T ss_pred EEEEEeccchhHHHHHHHHHHcCCeeeccc-c--CCCCcEEEEEEEcC-CCcccccCcchhhcCChHHcCcHHHHHHHhh
Confidence 999999999999999999999999998875 4 56689999998874 799988877776555444454321 246889
Q ss_pred cCEEEEccC---CCHHHHHHHHHHHHhCCCcEEEcCCCCC-----CCChhhhhccCceeccCHHHHhhccCCCCCCHHHH
Q 017101 201 AGIVLLQRE---IPDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQI 272 (377)
Q Consensus 201 ~~~~~~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~ 272 (377)
++++++++. .+.+....+++.++++|+++++|++... +....++++++|++++|++|++.|+|....+.++.
T Consensus 160 ~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~~~ 239 (345)
T PTZ00247 160 AQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDL 239 (345)
T ss_pred CCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCccCH
Confidence 999999874 4678888999999999999999986321 12356788999999999999999998321111234
Q ss_pred HHHHHHHHh------cCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCC--cccCccCchHHHHHHHHHHHhCCCCHHHHH
Q 017101 273 SEAVVKCHK------MGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAA--RVIDTTGAGDTFTASFAVGFVEGKSREECL 344 (377)
Q Consensus 273 ~~~~~~l~~------~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~--~vvdttGAGDaF~ag~l~~l~~g~~l~~al 344 (377)
.++++.+.+ .+.+.||||+|++|++++..+ ...++|+++.. ++||||||||+|+|||+++|++|+++++|+
T Consensus 240 ~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~-~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~~~~~al 318 (345)
T PTZ00247 240 KEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKD-GVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKDIDRCV 318 (345)
T ss_pred HHHHHHHHhccccccCCCCEEEEecCCCceEEEECC-EEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 455555543 257899999999999887655 45667766432 689999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCC
Q 017101 345 RFAAAAASLCVQVKGAIP 362 (377)
Q Consensus 345 ~~a~~aAa~~~~~~G~~~ 362 (377)
++|+++|+++|++.|+..
T Consensus 319 ~~a~~aAa~~v~~~Ga~~ 336 (345)
T PTZ00247 319 EAGHYSAQVIIQHNGCTY 336 (345)
T ss_pred HHHHHHHHHHHhccCCCC
Confidence 999999999999999874
No 15
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-44 Score=336.46 Aligned_cols=299 Identities=36% Similarity=0.567 Sum_probs=253.8
Q ss_pred CEEEEccceeeeeec-cCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 69 PLVVVGSANFDIYVE-IDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 69 ~I~viG~~~vD~~~~-v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
+|+++|++++|++.. .+++|..+...........+||++.|+|+++++||.++.++|.+|+|.+|+.+++.|++.|||+
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~~GVd~ 80 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRKEGVDT 80 (311)
T ss_pred CEEEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHHcCCcc
Confidence 489999999999996 7888888888877778899999999999999999999999999999999999999999999999
Q ss_pred ccEEeccCCCCCCceEEEEEecCCCeeEEEECCC-CCCCCCcCcCchhHHHHhhcCEEEEccCC---CHHHHHHHHHHHH
Q 017101 148 DYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT-NMSCWPEKFGDEDLEVVKKAGIVLLQREI---PDSVNIQVAKAAR 223 (377)
Q Consensus 148 ~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~a~ 223 (377)
+++... .+.+|+.+++.++++|+|++..+.+. .....+..+.. ..+...+++++.+.. +++....+++.++
T Consensus 81 ~~~~~~--~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 155 (311)
T COG0524 81 SHVVTD--EGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE---DELAGADVLHISGIQLEIPPEALLAALELAK 155 (311)
T ss_pred ceEEEc--CCCcceEEEEEEcCCCceeEEEECCcccccCChHHcCh---HHHhhcCeeeEEEeecCCChHHHHHHHHHHH
Confidence 999988 67789999999999999999999875 33333333321 456778888876533 3378889999999
Q ss_pred hCCCcEEEcCCCCCC----CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEE
Q 017101 224 SAGVPVIFDAGGMDA----PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALF 299 (377)
Q Consensus 224 ~~g~~v~~D~~~~~~----~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~ 299 (377)
+.|.++++|++.... .....+++++|++++|++|++.++|. .. +..+....++..+++.+++|+|++|++++
T Consensus 156 ~~g~~v~~d~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~-~~---~~~~~~~~~~~~~~~~vvvt~G~~Ga~~~ 231 (311)
T COG0524 156 AAGVTVSFDLNPRPALWDRELLEELLALADILFPNEEEAELLTGL-EE---DAEAAAALLLAKGVKTVVVTLGAEGAVVF 231 (311)
T ss_pred HcCCeEEEecCCCccccchhhHHHHHhhCCEEeCCHHHHHHHhCC-Cc---cHHHHHHHHhhcCCCEEEEEeCCCcEEEE
Confidence 999999999987643 34678899999999999999999986 11 23333366778899999999999999888
Q ss_pred EeCCe-eEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 300 VEGEK-PIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 300 ~~~~~-~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
..++. .+..++.+++++||||||||+|.|||+++|++|+++++|+++|+++|++++++.|+.+.+|+.++++.++++
T Consensus 232 ~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~p~~~~~~~~~~~ 309 (311)
T COG0524 232 TGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFANAAAALAVTRPGARPSLPTREEVEAFLEE 309 (311)
T ss_pred eCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhccCCCCCCCCCHHHHHHHHhc
Confidence 77653 222222346789999999999999999999999999999999999999999999999999999999999875
No 16
>PLN02967 kinase
Probab=100.00 E-value=3.4e-44 Score=349.97 Aligned_cols=301 Identities=16% Similarity=0.179 Sum_probs=234.8
Q ss_pred CCCEEEEccceeeeeeccCC---CCCC-------CCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHH
Q 017101 67 PPPLVVVGSANFDIYVEIDR---LPKV-------GETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLI 136 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~---~p~~-------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i 136 (377)
.+.|+|||++++|++-.... +-.. ........+...+||++.|+|++|++||.++.|+|.||+|.+|+++
T Consensus 196 ~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~l 275 (581)
T PLN02967 196 PPLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAM 275 (581)
T ss_pred CCeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 56799999999999652111 0000 0122335567889999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEE-ECCCCCCCCCcCcCchhHHHHhhcCEEEEccCC-----
Q 017101 137 TDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIII-VGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI----- 210 (377)
Q Consensus 137 ~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~----- 210 (377)
++.|++.||++++++.. ++.+|+.+++.++++|++++++ .++++.......+. .+.+..++++++.+..
T Consensus 276 l~~L~~~GVDts~v~~~--~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~---~~~l~~A~i~hfgg~~ll~e~ 350 (581)
T PLN02967 276 LYYLNVNKVQTRSVCID--GKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEIN---IDVLKEAKMFYFNTHSLLDPT 350 (581)
T ss_pred HHHHHHcCCcccceEec--CCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcC---HhHhcCCCEEEEeCchhcccc
Confidence 99999999999999987 7889999999999999987753 45655443333332 2467889999998742
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcCCCCCCC---------ChhhhhccCceeccCHHHHhhccCCCCCCHH-----------
Q 017101 211 PDSVNIQVAKAARSAGVPVIFDAGGMDAP---------IPQELLNFIDILSPNESELGRLTGMPTDSYE----------- 270 (377)
Q Consensus 211 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~~---------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~----------- 270 (377)
+...+..+++.|++.|++|+||++.+... .+.++++++|+|++|++|+..++|.......
T Consensus 351 ~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~ 430 (581)
T PLN02967 351 MRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFV 430 (581)
T ss_pred hHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccc
Confidence 23567889999999999999999854321 2457889999999999999999985421100
Q ss_pred -HHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCe--eEEeccCCCCc--ccCccCchHHHHHHHHHHHhCC-------C
Q 017101 271 -QISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEK--PIKQSIIPAAR--VIDTTGAGDTFTASFAVGFVEG-------K 338 (377)
Q Consensus 271 -~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~--~~~~~~~~~~~--vvdttGAGDaF~ag~l~~l~~g-------~ 338 (377)
...+.+..++..+++.|+||+|++|++++..+.. ...++++ +++ +||||||||+|+|||+++|++| +
T Consensus 431 ~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~-~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~ 509 (581)
T PLN02967 431 HYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDA-PITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKG 509 (581)
T ss_pred cchHHHHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccCC-CCCCCCCCCCchhHHHHHHHHHHHHhccCcccccc
Confidence 0123455666779999999999999988765431 2223433 344 5999999999999999999974 6
Q ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHH
Q 017101 339 SREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNL 373 (377)
Q Consensus 339 ~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~ 373 (377)
++++|+++|+++||+++++.|+++++|+++++++-
T Consensus 510 ~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~~ 544 (581)
T PLN02967 510 YLEKTIKYAIDCGVIDQWLLARTRGFPPKEDMEDE 544 (581)
T ss_pred cHHHHHHHHHHHHHHHhccCCCccCCCCHHHHhhh
Confidence 79999999999999999999999999999999753
No 17
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.3e-44 Score=346.41 Aligned_cols=303 Identities=19% Similarity=0.213 Sum_probs=230.7
Q ss_pred CCCEEEEccceeeeeeccCCCCCC-----C-----CeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHH
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKV-----G-----ETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLI 136 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~-----~-----~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i 136 (377)
++.|+++|++.+|++-........ . -......+...+||+++|+|+++++||.++.|+|.||+|.+|+++
T Consensus 125 ~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l 204 (496)
T PLN02543 125 PPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEEL 204 (496)
T ss_pred CCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 456999999999998642110000 0 001234567899999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcccEEeccCCCCCCceEEEEEe--cCCCeeEE-EE-CCCCCCCCCcCcCchhHHHHhhcCEEEEccCC--
Q 017101 137 TDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQ--SDGQNSII-IV-GGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-- 210 (377)
Q Consensus 137 ~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~--~~g~~~~~-~~-~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-- 210 (377)
++.|++.|||++++.+. ++.+|+.+++.++ ++| +.++ .. .+++....+..+. .+.+..++++++++..
T Consensus 205 ~~~L~~~GVDts~v~~~--~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~---~~~l~~a~ilh~~~~~l~ 278 (496)
T PLN02543 205 VLMMNKERVQTRAVKFD--ENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELN---LAVLKEARMFHFNSEVLT 278 (496)
T ss_pred HHHHHHcCCcccceEec--CCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcC---HhHhCCCceEEECChhhc
Confidence 99999999999999988 7889999999885 445 4443 22 3343333333332 3567889999998753
Q ss_pred -C--HHHHHHHHHHHHhCCCcEEEcCCCCCCC---------ChhhhhccCceeccCHHHHhhccCCCCC------CHH--
Q 017101 211 -P--DSVNIQVAKAARSAGVPVIFDAGGMDAP---------IPQELLNFIDILSPNESELGRLTGMPTD------SYE-- 270 (377)
Q Consensus 211 -~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~---------~~~~ll~~~dvl~~N~~E~~~l~g~~~~------~~~-- 270 (377)
+ .+...++++.|++.|++|+||++.+..- .+..+++++|++++|++|++.|+|.... +.+
T Consensus 279 ~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~ 358 (496)
T PLN02543 279 SPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYY 358 (496)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchhh
Confidence 2 3567788999999999999999854221 1456788999999999999999885310 000
Q ss_pred ----------------HHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccC----CCCcccCccCchHHHHHHH
Q 017101 271 ----------------QISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSII----PAARVIDTTGAGDTFTASF 330 (377)
Q Consensus 271 ----------------~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~----~~~~vvdttGAGDaF~ag~ 330 (377)
+. +.+..+.+.|++.||||+|++|++++..+... .++.. -+..+||||||||+|.|||
T Consensus 359 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g-~v~~~~~~~v~~~~VDTTGAGDAF~AGf 436 (496)
T PLN02543 359 AESFEQTKNWRDYYHYTP-EEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDG-VVVGTEDVLITPFTCDRTGSGDAVVAAI 436 (496)
T ss_pred hhhhhhhhcccccccCCH-HHHHHHHHCCCCEEEEEcCCCcEEEEECCCcc-cccccccccCCCCCcCCCchHHHHHHHH
Confidence 11 23456667799999999999999887653211 11111 0112489999999999999
Q ss_pred HHHHhC-------CCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhhC
Q 017101 331 AVGFVE-------GKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQYA 377 (377)
Q Consensus 331 l~~l~~-------g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~~ 377 (377)
+++|++ ++++++|+++|+++||++|++.|+.+++|+++++++|++++
T Consensus 437 L~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~ 490 (496)
T PLN02543 437 MRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQV 490 (496)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhh
Confidence 999985 78999999999999999999999999999999999999885
No 18
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=8.4e-44 Score=333.16 Aligned_cols=296 Identities=28% Similarity=0.350 Sum_probs=235.6
Q ss_pred CCCEEEEccceeeeeec--cCCCCC--CCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHh
Q 017101 67 PPPLVVVGSANFDIYVE--IDRLPK--VGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSG 142 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~--v~~~p~--~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~ 142 (377)
+++|+++|++++|+++. +++++. +++.........++|| ++|+|.++++||.++.++|.+|+|.+|+++++.|++
T Consensus 7 ~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~ 85 (315)
T TIGR02198 7 GAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALLAE 85 (315)
T ss_pred CCcEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHHH
Confidence 67899999999999987 556522 3334445556788999 799999999999999999999999999999999999
Q ss_pred CCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCC-CCCCc---CcCchhHHHHhhcCEEEEcc----CCCHHH
Q 017101 143 CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNM-SCWPE---KFGDEDLEVVKKAGIVLLQR----EIPDSV 214 (377)
Q Consensus 143 ~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~-~~~~~---~l~~~~~~~l~~~~~~~~~~----~~~~~~ 214 (377)
.||+++++... ++.+|+.+++++++++ .+........ ..+.. .+.+...+.++.++++++++ .++.+.
T Consensus 86 ~gI~~~~~~~~--~~~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 161 (315)
T TIGR02198 86 EGIDTSGLIRD--KDRPTTTKTRVLARNQ--QLLRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAKGVLTPRV 161 (315)
T ss_pred CCCCcceEEEC--CCCCcceEEEEEcCCe--EEEEecCCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCCCccCHHH
Confidence 99999999887 7778999988887632 2222221111 11110 11112234578999999964 345677
Q ss_pred HHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHH-hcCCCEEEEeeCC
Q 017101 215 NIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH-KMGVQQVLVKLGA 293 (377)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~-~~g~~~vvvT~G~ 293 (377)
...+++.++++|+++++|+++.. ...++++|++++|++|++.+++. ..+.++..++++.+. ++|++.|+||+|+
T Consensus 162 ~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~~d~l~~n~~E~~~l~~~-~~~~~~~~~~~~~l~~~~g~~~vivT~G~ 236 (315)
T TIGR02198 162 VQEVIAAARKHGKPVLVDPKGKD----FSRYRGATLITPNRKEAEAAVGA-CDTEAELVQAAEKLLEELDLEALLVTRSE 236 (315)
T ss_pred HHHHHHHHHhcCCCEEEeCCCcc----hhhcCCCcEECCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 88899999999999999998642 23578899999999999999983 334456677777766 4689999999999
Q ss_pred CCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHH
Q 017101 294 KGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNL 373 (377)
Q Consensus 294 ~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~ 373 (377)
+|++++..++..+++|++ .++++||+||||+|.|||++++++|+++++|+++|+++|+++|++.|+.+ ++++++++.
T Consensus 237 ~G~~~~~~~~~~~~~~~~-~~~vvdt~GAGDaf~ag~~~~l~~g~~~~~al~~A~~~aa~~~~~~G~~~--~~~~~~~~~ 313 (315)
T TIGR02198 237 KGMTLFTREGEPIHIPAQ-AREVYDVTGAGDTVIATLALALAAGASLEEACRLANAAAGVVVGKLGTAT--VSPAELANA 313 (315)
T ss_pred CCeEEEecCCCeEEecCC-CCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhccCCCCC--CCHHHHHHH
Confidence 999877644556778876 57899999999999999999999999999999999999999999999875 799999987
Q ss_pred Hh
Q 017101 374 LQ 375 (377)
Q Consensus 374 l~ 375 (377)
|+
T Consensus 314 ~~ 315 (315)
T TIGR02198 314 LQ 315 (315)
T ss_pred hC
Confidence 74
No 19
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=2.1e-45 Score=341.72 Aligned_cols=293 Identities=35% Similarity=0.540 Sum_probs=250.6
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|.+|+|+|++++|++..++++ .+...+......++||++.|+|++|++||.++.++|.+|+|.+|+.+++.|++.||+
T Consensus 1 m~~v~~iG~~~iD~~~~~~~~--~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~ 78 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVDRF--KGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKERGVD 78 (301)
T ss_dssp EEEEEEESEEEEEEEEESSSH--TTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHHTTEE
T ss_pred CCcEEEECccceEEEeecCCc--CCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhcccccccc
Confidence 357999999999999998887 445558888999999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEcc-----CCCHHHHHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQR-----EIPDSVNIQVAKA 221 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~ 221 (377)
++++.+. ++.+|+.++++++++|+|++..+.+.........+ ..+.+..++++++++ ..+......+.+.
T Consensus 79 ~~~i~~~--~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (301)
T PF00294_consen 79 TSYIPRD--GDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDEL---DEEAIDEADILHLSGVSLPEGIPEDLLEALAKA 153 (301)
T ss_dssp ETTEEEE--SSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHH---HHHHHHTESEEEEESGHCSTTSHHHHHHHHHHH
T ss_pred ccccccc--cccccceeEeeecccccceeeeccccccccccccc---cccccccccceeecccccccccccceeeecccc
Confidence 9999987 77799999999999999999888765543222222 456788999999998 5566777788888
Q ss_pred HHhCC--CcEEEcCCCC-CCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEE
Q 017101 222 ARSAG--VPVIFDAGGM-DAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSAL 298 (377)
Q Consensus 222 a~~~g--~~v~~D~~~~-~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~ 298 (377)
+++.+ .+++.++... ..+...++++++|++++|++|+..+++....+.++..+.++.++..+++.+++|+|++|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~ 233 (301)
T PF00294_consen 154 AKKNGPFDPVFRDPSWDDLREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVTLGEDGALY 233 (301)
T ss_dssp HHHTTEEEEEEEGGGSHHHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEE
T ss_pred cccccccccccccccccccchhhhhhccccchhccccccccccccccccchhhhhccccccchhhhhhhhccccccCccc
Confidence 88887 4566666442 12345677799999999999999999988777888888888888899999999999999988
Q ss_pred EEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCH
Q 017101 299 FVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDR 367 (377)
Q Consensus 299 ~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~ 367 (377)
+..+ +.++++++++.+++|||||||+|+|||++++++|+++++|+++|+++|++++++.|+..++||.
T Consensus 234 ~~~~-~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~~a~~~aa~~v~~~g~~~~~p~~ 301 (301)
T PF00294_consen 234 YTND-ESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALKFANAAAALKVQQPGPRSPLPTA 301 (301)
T ss_dssp EETT-EEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSGGTT--
T ss_pred cccc-ccccccccccccccceeccchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCcCCCCCC
Confidence 7644 5677777557899999999999999999999999999999999999999999999999988873
No 20
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.3e-43 Score=327.90 Aligned_cols=279 Identities=25% Similarity=0.356 Sum_probs=228.9
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+|+++|++++|++..++++|.++...........+|| +.|+|++|++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 79 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRDEGIEIL 79 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHHcCCccc
Confidence 5899999999999999999999998888888999999 999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCC------HHHHHHHHHHH
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIP------DSVNIQVAKAA 222 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~a 222 (377)
++... +.+|+.++++++++|+|+++.+.+++....++.+.+ ..+..++++++++... ...+.++++.+
T Consensus 80 ~~~~~---~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (289)
T cd01944 80 LPPRG---GDDGGCLVALVEPDGERSFISISGAEQDWSTEWFAT---LTVAPYDYVYLSGYTLASENASKVILLEWLEAL 153 (289)
T ss_pred ccccc---CCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhcc---ccCCCCCEEEEeCccccCcchhHHHHHHHHHhc
Confidence 88764 457888888888899999988877654322222221 1356789999876421 23344445443
Q ss_pred HhCCCcEEEcCCCCCCC----ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEE
Q 017101 223 RSAGVPVIFDAGGMDAP----IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSAL 298 (377)
Q Consensus 223 ~~~g~~v~~D~~~~~~~----~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~ 298 (377)
+ .+.++++|++.+... ..+.+++++|++++|++|++.++|.... +...+++.+.+.+++.|+||+|++|+++
T Consensus 154 ~-~~~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~---~~~~~~~~~~~~~~~~vvvt~G~~Ga~~ 229 (289)
T cd01944 154 P-AGTTLVFDPGPRISDIPDTILQALMAKRPIWSCNREEAAIFAERGDP---AAEASALRIYAKTAAPVVVRLGSNGAWI 229 (289)
T ss_pred c-CCCEEEEcCcccccccCHHHHHHHHhcCCEEccCHHHHHHHhCCCCc---chHHHHHHHHhccCCeEEEEECCCcEEE
Confidence 3 578999999865422 3467789999999999999999986432 1223356677788999999999999988
Q ss_pred EEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC
Q 017101 299 FVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKG 359 (377)
Q Consensus 299 ~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G 359 (377)
+..++..+++|++ .++++|||||||+|+|||++++.+|+++++|+++|+++|++++++.|
T Consensus 230 ~~~~~~~~~~~~~-~~~vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~a~a~aa~~~~~~G 289 (289)
T cd01944 230 RLPDGNTHIIPGF-KVKAVDTIGAGDTHAGGMLAGLAKGMSLADAVLLANAAAAIVVTRSG 289 (289)
T ss_pred EecCCCeEEecCC-CCCCccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCC
Confidence 7756656777776 56899999999999999999999999999999999999999999876
No 21
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.2e-43 Score=324.76 Aligned_cols=271 Identities=34% Similarity=0.463 Sum_probs=229.0
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+|+|+|++++|+++.++++|..++..........+||++.|+|.++++||.++.++|.+|+|..|+++++.|++.||+++
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGVDTS 80 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCCCcc
Confidence 58999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCc
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 228 (377)
++... ++.+|+.++++++++|++++....++.....+.. ....+..++++++++.. ...++++.+++.|++
T Consensus 81 ~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~ 151 (279)
T cd01942 81 HVRVV--DEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND----EADPDGLADIVHLSSGP---GLIELARELAAGGIT 151 (279)
T ss_pred ceEEc--CCCCcceEEEEEcCCCCEEEEecCCcccccccCC----chhhhcccCEEEeCCch---HHHHHHHHHHHcCCe
Confidence 99776 6678999999998888888876666543322221 23567889999998753 356777888888999
Q ss_pred EEEcCCCCCCC----ChhhhhccCceeccCHHHH---hhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEe
Q 017101 229 VIFDAGGMDAP----IPQELLNFIDILSPNESEL---GRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVE 301 (377)
Q Consensus 229 v~~D~~~~~~~----~~~~ll~~~dvl~~N~~E~---~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~ 301 (377)
+++|+++.... ....+++++|++++|++|+ ..+++.. +... ..+++.|++|+|++|++++..
T Consensus 152 v~~D~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~-----~~~~------~~~~~~vvvt~G~~G~~~~~~ 220 (279)
T cd01942 152 VSFDPGQELPRLSGEELEEILERADILFVNDYEAELLKERTGLS-----EAEL------ASGVRVVVVTLGPKGAIVFED 220 (279)
T ss_pred EEEcchhhhhhccHHHHHHHHhhCCEEecCHHHHHHHHhhcCCC-----hHHH------hcCCCEEEEEECCCceEEEEC
Confidence 99999864322 2467889999999999999 4555543 1111 168999999999999987765
Q ss_pred CCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCC
Q 017101 302 GEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGA 360 (377)
Q Consensus 302 ~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~ 360 (377)
+ +.+++|++++.+++|||||||+|+|||+++|++|+++++|+++|+++|++++++.|+
T Consensus 221 ~-~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~l~~al~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 221 G-EEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAASLKVERRGA 278 (279)
T ss_pred C-ceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcccCC
Confidence 4 567788765688999999999999999999999999999999999999999999986
No 22
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=1.6e-43 Score=329.63 Aligned_cols=291 Identities=27% Similarity=0.404 Sum_probs=241.3
Q ss_pred EEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcccEE
Q 017101 72 VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMN 151 (377)
Q Consensus 72 viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~ 151 (377)
|.=++++|+++.++++| +++.....+...++||++.|+|.++++||.++.++|.+|+| .|+.+++.|++.||+++++.
T Consensus 4 ~~~~~~~D~~~~~~~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~~gId~~~~~ 81 (304)
T TIGR03828 4 VTLNPAIDLTIELDGLT-LGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLREEGIKTDFVR 81 (304)
T ss_pred EEcchHHeEEEEccccc-cCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHHCCCcceEEE
Confidence 34478999999999998 88899998899999999999999999999999999999999 69999999999999999888
Q ss_pred eccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc---hhHHHHhhcCEEEEccCC----CHHHHHHHHHHHHh
Q 017101 152 VVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD---EDLEVVKKAGIVLLQREI----PDSVNIQVAKAARS 224 (377)
Q Consensus 152 ~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~a~~ 224 (377)
.. + +|+.++++++.+|+++.+...++.. .+..+.. ...+.+..++++++++.. +.+....+++.+++
T Consensus 82 ~~--~--~t~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~ 155 (304)
T TIGR03828 82 VP--G--ETRINVKIKEPSGTETKLNGPGPEI--SEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALARE 155 (304)
T ss_pred CC--C--CCeeeEEEEeCCCCEEEEECCCCCC--CHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 64 3 4777888888888888776554321 1111110 111357789999998753 35677889999999
Q ss_pred CCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCe
Q 017101 225 AGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEK 304 (377)
Q Consensus 225 ~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~ 304 (377)
.+.++++|++.. ...+.+....|++++|++|++.+++....+.+++.++++.+.+.|++.||||+|++|++++.+++
T Consensus 156 ~~~~v~~D~~~~--~~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~- 232 (304)
T TIGR03828 156 KGAKVILDTSGE--ALRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLISLGADGALLVTKEG- 232 (304)
T ss_pred cCCEEEEECChH--HHHHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCcEEEcCCc-
Confidence 999999999753 12223334678999999999999987655667788888888889999999999999998776554
Q ss_pred eEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 305 PIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 305 ~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
.+++|++ ..+++|||||||+|.|||+++|++|+++++|+++|+++|+.+|++.|+. +|+++++++++.+
T Consensus 233 ~~~~~~~-~~~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~~a~~~Aa~~~~~~G~~--~p~~~~~~~~~~~ 301 (304)
T TIGR03828 233 ALFAQPP-KGEVVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAGSAAAFSEGTG--LPDPEDIEELLPQ 301 (304)
T ss_pred eEEEeCC-CccccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCCC--CCCHHHHHHHHhc
Confidence 5677765 6789999999999999999999999999999999999999999999974 7999999999875
No 23
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=9e-43 Score=330.43 Aligned_cols=296 Identities=22% Similarity=0.286 Sum_probs=229.2
Q ss_pred CCCEEEEc-cceeeeeeccCC-------CCCCCCeee----------------------eCcceecCCChHHHHHHHHHH
Q 017101 67 PPPLVVVG-SANFDIYVEIDR-------LPKVGETVA----------------------AKTSQTLAGGKGANQAACGAK 116 (377)
Q Consensus 67 ~~~I~viG-~~~vD~~~~v~~-------~p~~~~~~~----------------------~~~~~~~~GG~~~NvA~~la~ 116 (377)
+++|+.|| +..+|+...++. +++.+.... ......++||++.|+++++++
T Consensus 19 ~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~ 98 (367)
T PLN02379 19 PPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLSA 98 (367)
T ss_pred CCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHHH
Confidence 67899999 999999988743 232222221 012456799999999999986
Q ss_pred -cCCCceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhH
Q 017101 117 -LSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDL 195 (377)
Q Consensus 117 -LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 195 (377)
||.++.++|.+|+|.+|+++++.|++.||++++++.. +.+|+.++++++++|+|++..+.+.........+. .
T Consensus 99 ~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~---~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~---~ 172 (367)
T PLN02379 99 GFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAK---KGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELT---K 172 (367)
T ss_pred hcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccC---CCCCceEEEEECCCCCccccCCccccccCChhHCC---H
Confidence 9999999999999999999999999999999888653 34899999999999999886554444333223332 2
Q ss_pred HHHhhcCEEEEccC-CCHHHHHHHHHHHHhCCCcEEEcCCCC-----CCCChhhhh--ccCceeccCHHHHhhccCCCCC
Q 017101 196 EVVKKAGIVLLQRE-IPDSVNIQVAKAARSAGVPVIFDAGGM-----DAPIPQELL--NFIDILSPNESELGRLTGMPTD 267 (377)
Q Consensus 196 ~~l~~~~~~~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~-----~~~~~~~ll--~~~dvl~~N~~E~~~l~g~~~~ 267 (377)
+.++.+++++++.. .+.+...++++.|+++|+++++|++.. .+.....++ +++|++++|++|++.+++....
T Consensus 173 ~~~~~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~~~ 252 (367)
T PLN02379 173 EDFKGSKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRGEQE 252 (367)
T ss_pred HHHhcCCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCCCC
Confidence 56789999999832 356788899999999999999999752 123334455 4899999999999999864321
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHH
Q 017101 268 SYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFA 347 (377)
Q Consensus 268 ~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a 347 (377)
++..++. .+++.+++.++||+|++|++++.. ++.+++|+++..++||||||||+|+|||+|+|++|+++++|+++|
T Consensus 253 --~~~~~~~-~~l~~~~~~vvvT~G~~Ga~~~~~-~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~l~~a~~~g 328 (367)
T PLN02379 253 --SDPEAAL-EFLAKYCNWAVVTLGSKGCIARHG-KEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLSLEECCKVG 328 (367)
T ss_pred --CCHHHHH-HHHHhcCCEEEEEECCCCeEEEEC-CEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 1233333 344557999999999999987754 457788887556899999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCHHHHHH
Q 017101 348 AAAASLCVQVKGAIPSMPDRKSVLN 372 (377)
Q Consensus 348 ~~aAa~~~~~~G~~~~~p~~e~i~~ 372 (377)
+++|+.+|++.|++......+++.+
T Consensus 329 ~~aAa~vi~~~G~~~~~~~~~~~~~ 353 (367)
T PLN02379 329 ACSGGSVVRALGGEVTPENWQWMYK 353 (367)
T ss_pred HHHHHHHHhccCCCCChHHHHHHHH
Confidence 9999999999998753333333333
No 24
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=7.7e-43 Score=322.85 Aligned_cols=281 Identities=16% Similarity=0.195 Sum_probs=225.3
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
.|+|+|++++|++..++++|..++.........++||++.|+|.++++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~v~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~~gId~~ 80 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQSRGIDIS 80 (290)
T ss_pred CEEEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHHcCCcee
Confidence 48999999999999999999998888888888899999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC--
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG-- 226 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g-- 226 (377)
++... ++..++.++++.+++|+|+++...++......+.+. ...++.++++++++..+. ....+++.+++.+
T Consensus 81 ~~~~~--~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 154 (290)
T cd01939 81 HCYRK--DIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFS---KIDLTQYGWIHFEGRNPD-ETLRMMQHIEEHNNR 154 (290)
T ss_pred eeeEc--CCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHh---hhhhccCCEEEEeccCHH-HHHHHHHHHHHhcCc
Confidence 98765 554566677777778899888877654322211111 123578999999987764 3457777777766
Q ss_pred -----CcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEe
Q 017101 227 -----VPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVE 301 (377)
Q Consensus 227 -----~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~ 301 (377)
+++++|+.... .....+++++|++++|++|++.+ +.. +.++... .......+++.+++|+|++|++++..
T Consensus 155 ~~~~~~~v~~d~~~~~-~~~~~~l~~~di~~~n~~~~~~~-~~~--~~~~~~~-~~~~~~~~~~~vvvt~G~~G~~~~~~ 229 (290)
T cd01939 155 RPEIRITISVEVEKPR-EELLELAAYCDVVFVSKDWAQSR-GYK--SPEECLR-GEGPRAKKAALLVCTWGDQGAGALGP 229 (290)
T ss_pred CCCcceEEEEEeccCc-hhhhhHHhhCCEEEEEhHHHHhc-CcC--CHHHHHH-hhhhhccCCcEEEEEcccCCeEEEcC
Confidence 68889987543 33458899999999999998764 532 2233221 12223447899999999999988766
Q ss_pred CCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhcccCC
Q 017101 302 GEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKS-REECLRFAAAAASLCVQVKGA 360 (377)
Q Consensus 302 ~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~-l~~al~~a~~aAa~~~~~~G~ 360 (377)
++..+++|+++..++||||||||+|.|||++++++|++ +++|+++|+++|++++++.|.
T Consensus 230 ~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 230 DGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred CCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHhhhcC
Confidence 55567888775557999999999999999999999995 999999999999999999874
No 25
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=1.7e-42 Score=322.71 Aligned_cols=286 Identities=28% Similarity=0.366 Sum_probs=227.5
Q ss_pred CEEEEccceeeeeecc--CCCCCCCCe--eeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCC
Q 017101 69 PLVVVGSANFDIYVEI--DRLPKVGET--VAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v--~~~p~~~~~--~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~g 144 (377)
+|+++|+.++|+++.+ +++|.+.+. .........+|| +.|+|.+|++||.++.++|.+|+|.+|+++++.|++.|
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~g 79 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEG 79 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCC
Confidence 5899999999998864 566444332 334456678999 68999999999999999999999999999999999999
Q ss_pred CCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcC---cCchhHHHHhhcCEEEEcc----CCCHHHHHH
Q 017101 145 VRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK---FGDEDLEVVKKAGIVLLQR----EIPDSVNIQ 217 (377)
Q Consensus 145 Vd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---l~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 217 (377)
|+++++ .. ++.+|+.+++++++ +++.+....+......... +.+...+.++.++++++++ .++.+....
T Consensus 80 I~~~~~-~~--~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~ 155 (304)
T cd01172 80 IDTDGI-VD--EGRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEA 155 (304)
T ss_pred CCcceE-ec--CCCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCHHHHHH
Confidence 999985 44 66679888888765 4555544433222211111 1122234578999999965 345667888
Q ss_pred HHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHH-hcCCCEEEEeeCCCCe
Q 017101 218 VAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH-KMGVQQVLVKLGAKGS 296 (377)
Q Consensus 218 ~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~-~~g~~~vvvT~G~~G~ 296 (377)
+++.+++.++++++|++.... ..++++|++++|++|++.+++....+.+++.++++.+. ..|++.++||+|++|+
T Consensus 156 ~~~~a~~~~~~v~~D~~~~~~----~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~ 231 (304)
T cd01172 156 LIAAARELGIPVLVDPKGRDY----SKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEALLVTLGEEGM 231 (304)
T ss_pred HHHHHHhcCCCEEEeCCCcch----hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCCeEEEEcCCCcc
Confidence 999999999999999986432 56789999999999999999876555566777777765 4689999999999999
Q ss_pred EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCC
Q 017101 297 ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSM 364 (377)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~ 364 (377)
+++..+++.+++|++ .++++|||||||+|+|||+++|++|+++++|+++|+++|+.+|++.|+.+.+
T Consensus 232 ~~~~~~~~~~~~~~~-~~~vvdttGAGDaf~ag~i~~l~~g~~~~~al~~a~a~Aa~~~~~~g~~~~~ 298 (304)
T cd01172 232 TLFERDGEVQHIPAL-AKEVYDVTGAGDTVIATLALALAAGADLEEAAFLANAAAGVVVGKVGTAPVT 298 (304)
T ss_pred EEEcCCCcEEEecCC-CCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhheeeecCCCCCcC
Confidence 877635567788887 5789999999999999999999999999999999999999999999997643
No 26
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.5e-42 Score=320.55 Aligned_cols=283 Identities=28% Similarity=0.389 Sum_probs=230.1
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
.|+++|++++|+++.+++.|.+++.... .....+||++.|+|.++++||.++.++|.+|+|..|+.+++.|++.||+++
T Consensus 1 ~v~~~G~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~~~ 79 (288)
T cd01941 1 EIVVIGAANIDLRGKVSGSLVPGTSNPG-HVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLNVR 79 (288)
T ss_pred CeEEEEeEEEeeeecccCccccCCCCCe-eEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCccc
Confidence 3899999999999999888777665543 457899999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEE-CCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCC
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIV-GGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGV 227 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ 227 (377)
++. . ++.+|+.++++++.+|++++... .+..... ...+.+...+.+..++++++++..+......+++.+++.+.
T Consensus 80 ~~~-~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~ 155 (288)
T cd01941 80 GIV-F--EGRSTASYTAILDKDGDLVVALADMDIYELL-TPDFLRKIREALKEAKPIVVDANLPEEALEYLLALAAKHGV 155 (288)
T ss_pred eee-e--CCCCcceEEEEECCCCCEEEEEechHhhhhC-CHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHhhhhcCC
Confidence 887 5 66789999999988899886332 1111111 11111223356889999999888888888889999999999
Q ss_pred cEEEcCCCCCCCC-hhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEe--CCe
Q 017101 228 PVIFDAGGMDAPI-PQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVE--GEK 304 (377)
Q Consensus 228 ~v~~D~~~~~~~~-~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~--~~~ 304 (377)
++++|+....... ...+++++|++++|++|+..+++....+.+....+++.+.+.+++.+++|+|++|++++.+ ++.
T Consensus 156 ~v~~d~~~~~~~~~~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~ 235 (288)
T cd01941 156 PVAFEPTSAPKLKKLFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVTLGAKGVLLSSREGGVE 235 (288)
T ss_pred cEEEEccchHHhccchhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHcCCcEEEEEeCCCcEEEEecCCCce
Confidence 9999986432111 1157899999999999999999876444344445567777889999999999999988776 455
Q ss_pred eEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Q 017101 305 PIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQ 356 (377)
Q Consensus 305 ~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~ 356 (377)
.+++|+++..+++||+||||+|.|||++++++|+++++|+++|+++|+++|+
T Consensus 236 ~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g~~~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 236 TKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQAAAALTLE 287 (288)
T ss_pred eEEecCCCCccceeCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 6778873367899999999999999999999999999999999999999986
No 27
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=2.9e-42 Score=321.16 Aligned_cols=282 Identities=25% Similarity=0.357 Sum_probs=227.6
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+++|++++|++. ..+ ......+||++.|+|.++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 2 ~~~il~iG~~~iD~~~------~~~-----~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~ 70 (304)
T PRK09434 2 MNKVWVLGDAVVDLIP------EGE-----NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQDEGVD 70 (304)
T ss_pred CCcEEEecchheeeec------CCC-----CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHHcCCC
Confidence 3589999999999982 221 22456899999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCC-----CHHHHHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQVAKA 221 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~ 221 (377)
++++... ++.+|+.+++.++++|+|++......... ..+.....+.+..++++++.+.. ......++++.
T Consensus 71 ~~~~~~~--~~~~t~~~~i~~~~~g~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (304)
T PRK09434 71 TTYLRLD--PAHRTSTVVVDLDDQGERSFTFMVRPSAD---LFLQPQDLPPFRQGEWLHLCSIALSAEPSRSTTFEAMRR 145 (304)
T ss_pred CcceEEc--CCCCceEEEEEECCCCCEeEEEecCCchh---hhCCHHHhhhhcCCCEEEEccccccCchHHHHHHHHHHH
Confidence 9999887 77889999999988899987544322111 11222333346678898886532 12455678889
Q ss_pred HHhCCCcEEEcCCCCCC---------CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHh-cCCCEEEEee
Q 017101 222 ARSAGVPVIFDAGGMDA---------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK-MGVQQVLVKL 291 (377)
Q Consensus 222 a~~~g~~v~~D~~~~~~---------~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~-~g~~~vvvT~ 291 (377)
+++++.++++|++.... ...+++++++|++++|++|+..++|.. +..++++.+.+ .+++.++||+
T Consensus 146 ~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~-----~~~~~~~~l~~~~g~~~vvvt~ 220 (304)
T PRK09434 146 IKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTS-----QLEDAIYALADRYPIALLLVTL 220 (304)
T ss_pred HHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCC-----CHHHHHHHHHhhcCCcEEEEEe
Confidence 99999999999985421 123456889999999999999998854 34566777765 6889999999
Q ss_pred CCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhcccCCCCCCC
Q 017101 292 GAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGK------SREECLRFAAAAASLCVQVKGAIPSMP 365 (377)
Q Consensus 292 G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~------~l~~al~~a~~aAa~~~~~~G~~~~~p 365 (377)
|++|+.++..+ +.+++|++ +.+++|||||||+|+|||+++|++|+ ++++|+++|+++|++++++.|+..++|
T Consensus 221 G~~G~~~~~~~-~~~~~~~~-~~~~vDttGAGD~f~ag~~~~l~~g~~~~~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~ 298 (304)
T PRK09434 221 GAEGVLVHTRG-QVQHFPAP-SVDPVDTTGAGDAFVAGLLAGLSQAGLWTDEAELAEIIAQAQACGALATTAKGAMTALP 298 (304)
T ss_pred cCCceEEEeCC-ceeEeCCC-CCCCCcCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHcccCCcCCCC
Confidence 99999877644 46778876 57899999999999999999999997 899999999999999999999998999
Q ss_pred CHHHHH
Q 017101 366 DRKSVL 371 (377)
Q Consensus 366 ~~e~i~ 371 (377)
++++++
T Consensus 299 ~~~~~~ 304 (304)
T PRK09434 299 NRQELE 304 (304)
T ss_pred ChHHcC
Confidence 988763
No 28
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=1.6e-42 Score=321.32 Aligned_cols=277 Identities=31% Similarity=0.430 Sum_probs=228.0
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+|+|+|++++|++...+ ++.....+....+||++.|+|+++++||.++.++|.+|+|..|+.+++.|++.||+++
T Consensus 1 ~i~~iG~~~iD~~~~~~-----~~~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~~gi~~~ 75 (294)
T cd01166 1 DVVTIGEVMVDLSPPGG-----GRLEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGVDTS 75 (294)
T ss_pred CeEEechhheeeecCCC-----CccchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHcCCCCc
Confidence 58999999999986543 3445556677899999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCC--CCCCCcCcCchhHHHHhhcCEEEEccCCCH------HHHHHHHH
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTN--MSCWPEKFGDEDLEVVKKAGIVLLQREIPD------SVNIQVAK 220 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~ 220 (377)
++... ++.+|+.+++.++++|+|++..+.+.. .......+. ...+.+++++++++..+. +...++++
T Consensus 76 ~~~~~--~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
T cd01166 76 HVRVD--PGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLD---EAALAGADHLHLSGITLALSESAREALLEALE 150 (294)
T ss_pred eEEEe--CCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCC---HHHHhCCCEEEEcCcchhhCHHHHHHHHHHHH
Confidence 99877 777899999999888899887775322 111112222 356789999999876542 56777888
Q ss_pred HHHhCCCcEEEcCCCCCC--------CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeC
Q 017101 221 AARSAGVPVIFDAGGMDA--------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLG 292 (377)
Q Consensus 221 ~a~~~g~~v~~D~~~~~~--------~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G 292 (377)
.+++.++++++|++.... .....+++++|++++|+.|++.+++... .+++.+.++.+ +.+++.++||+|
T Consensus 151 ~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~--~~~~~~~~~~l-~~g~~~viit~G 227 (294)
T cd01166 151 AAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDED--PTDAAERALAL-ALGVKAVVVKLG 227 (294)
T ss_pred HHHHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCC--chhHHHHHHhh-cCCccEEEEEEc
Confidence 999999999999985431 1234678899999999999999988643 23555566666 679999999999
Q ss_pred CCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCC
Q 017101 293 AKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGA 360 (377)
Q Consensus 293 ~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~ 360 (377)
++|++++..+ +.+++|++ ..+++||+||||+|+|||+++|++|+++++|+++|+++|+.++++.|+
T Consensus 228 ~~G~~~~~~~-~~~~~~~~-~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 228 AEGALVYTGG-GRVFVPAY-PVEVVDTTGAGDAFAAGFLAGLLEGWDLEEALRFANAAAALVVTRPGD 293 (294)
T ss_pred CCceEEEECC-ceEEeCCC-CcccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 9999777554 56778876 468999999999999999999999999999999999999999999986
No 29
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=4.3e-42 Score=313.76 Aligned_cols=264 Identities=25% Similarity=0.364 Sum_probs=223.0
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+|+|+|++++|+++.++++|.+++..........+||++.|+|.++++||.++.++|.+|+|..|+.+++.|++ ++++.
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~-~~~~~ 79 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES-GGDKH 79 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh-cCCcc
Confidence 58999999999999999999999898888999999999999999999999999999999999999999999999 99998
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCc
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 228 (377)
++... +.+|+.++++++++|+|+++...+.. ...+ .++.+..++++++++..+ ..++++.+++.+ .
T Consensus 80 ~~~~~---~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~-~ 145 (265)
T cd01947 80 TVAWR---DKPTRKTLSFIDPNGERTITVPGERL----EDDL---KWPILDEGDGVFITAAAV---DKEAIRKCRETK-L 145 (265)
T ss_pred eEEec---CCCCceEEEEECCCCcceEEecCCCC----cccC---CHhHhccCCEEEEecccc---cHHHHHHHHHhC-C
Confidence 87764 44899999999989999887654332 1122 234678899999987653 246677777765 5
Q ss_pred EEEcCCCCCC-CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEE
Q 017101 229 VIFDAGGMDA-PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIK 307 (377)
Q Consensus 229 v~~D~~~~~~-~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~ 307 (377)
+++|++.... ....++++++|++++|++|+..+++ ++.+.+.+++.+++|+|++|+.++..+ +.++
T Consensus 146 ~~~d~~~~~~~~~~~~~~~~~d~~~~n~~e~~~l~~------------~~~~~~~~~~~viit~G~~Ga~~~~~~-~~~~ 212 (265)
T cd01947 146 VILQVTPRVRVDELNQALIPLDILIGSRLDPGELVV------------AEKIAGPFPRYLIVTEGELGAILYPGG-RYNH 212 (265)
T ss_pred eEeccCccccchhHHHHhhhCCEEEeCHHHHHHhhh------------HHHHHhccCCEEEEEeCCCCeEEEECC-eeEE
Confidence 7888876532 2356788999999999999988753 345567799999999999999887644 5778
Q ss_pred eccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCC
Q 017101 308 QSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAI 361 (377)
Q Consensus 308 ~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~ 361 (377)
+|++ +++++|||||||+|.|||++++++|+++++|+++|+++|+.++++.|++
T Consensus 213 ~~~~-~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa~~v~~~G~~ 265 (265)
T cd01947 213 VPAK-KAKVPDSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGAICVSHFGPY 265 (265)
T ss_pred CCCC-CCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 8876 6789999999999999999999999999999999999999999999863
No 30
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=7e-42 Score=319.14 Aligned_cols=293 Identities=19% Similarity=0.279 Sum_probs=238.9
Q ss_pred EEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCccc
Q 017101 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDY 149 (377)
Q Consensus 70 I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~ 149 (377)
+.+.=++.+|+++.+++++ .+...++......+||++.|+|+++++||.++.+++.+|+ .+|+++++.|++.||++++
T Consensus 5 ~~~~~~p~~d~~~~~~~~~-~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~~gv~~~~ 82 (309)
T PRK10294 5 YTLTLAPSLDSATITPQIY-PEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLADENVPVAT 82 (309)
T ss_pred EEEecChHHeEEEEeCcee-eCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHHcCCCceE
Confidence 3455689999999999995 7778888888999999999999999999999999999996 7999999999999999999
Q ss_pred EEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc--hhHHHHhhcCEEEEccCCCH----HHHHHHHHHHH
Q 017101 150 MNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD--EDLEVVKKAGIVLLQREIPD----SVNIQVAKAAR 223 (377)
Q Consensus 150 v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~a~ 223 (377)
+... +. .++..++..+++|+++++..++... ..+.+.. ...+.++.++++++++..+. +.+.++++.++
T Consensus 83 ~~~~--~~-~~~~~~i~~~~~g~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a~ 157 (309)
T PRK10294 83 VEAK--DW-TRQNLHVHVEASGEQYRFVMPGAAL--NEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQ 157 (309)
T ss_pred EECC--CC-CeeeEEEEEcCCCcEEEEECCCCCC--CHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 9875 43 3444555667788887766655431 1111111 11123567899999887653 67788999999
Q ss_pred hCCCcEEEcCCCCCCCChhhh--hccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcC-CCEEEEeeCCCCeEEEE
Q 017101 224 SAGVPVIFDAGGMDAPIPQEL--LNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMG-VQQVLVKLGAKGSALFV 300 (377)
Q Consensus 224 ~~g~~v~~D~~~~~~~~~~~l--l~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g-~~~vvvT~G~~G~~~~~ 300 (377)
+.|+++++|+++.. .... ++++|++++|++|+..+++.+..+.+++.++++.+++.+ ++.++||+|++|++++.
T Consensus 158 ~~g~~v~~D~~~~~---~~~~~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~ 234 (309)
T PRK10294 158 KQGIRCIIDSSGDA---LSAALAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVVSLGPQGALGVD 234 (309)
T ss_pred HcCCeEEEeCCCHH---HHHHHhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEecCCCceEEEc
Confidence 99999999997431 2222 457999999999999999877666677888888888876 89999999999998765
Q ss_pred eCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 301 EGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 301 ~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
.+ +.++++++ +++++|||||||+|+|||+++|++|+++++|+++|+++|+++|++.|+.+ ++++++++++++
T Consensus 235 ~~-~~~~~~~~-~v~vvDttGAGDaf~ag~l~~l~~g~~~~~al~~a~a~aa~~v~~~G~~~--~~~~~~~~~~~~ 306 (309)
T PRK10294 235 SE-NCIQVVPP-PVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTRL--CSHDDTQKIYAY 306 (309)
T ss_pred CC-ccEEEeCC-CcccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCC--CCHHHHHHHHHH
Confidence 44 45667765 57899999999999999999999999999999999999999999999875 788999988875
No 31
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=5.1e-42 Score=318.15 Aligned_cols=274 Identities=30% Similarity=0.390 Sum_probs=225.6
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+|+|+|++++|++...+.. .......+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||++.
T Consensus 1 ~ilviG~~~~D~~~~~~~~--------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~ 72 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA--------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGVDTR 72 (295)
T ss_pred CEEEEcceeEEEecCCCCC--------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHHcCCCch
Confidence 5899999999999765543 45567889999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCC-----CHHHHHHHHHHHH
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQVAKAAR 223 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~a~ 223 (377)
++.+. ++.+|+.++++++++|+|++....+......... +...+.++.++++++.+.. ..+...++++.++
T Consensus 73 ~~~~~--~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 148 (295)
T cd01167 73 GIQFD--PAAPTTLAFVTLDADGERSFEFYRGPAADLLLDT--ELNPDLLSEADILHFGSIALASEPSRSALLELLEAAK 148 (295)
T ss_pred heeec--CCCCceEEEEEECCCCCEeEEeecCCcHhhhcCc--cCChhHhccCCEEEEechhhccchHHHHHHHHHHHHH
Confidence 99876 6779999999998889999888766543211111 0123567889999986531 1345678889999
Q ss_pred hCCCcEEEcCCCCCC---C------ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCC
Q 017101 224 SAGVPVIFDAGGMDA---P------IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAK 294 (377)
Q Consensus 224 ~~g~~v~~D~~~~~~---~------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~ 294 (377)
+.+.++++|++.... . ...++++++|++++|++|+..+++... ..++++.+.+.+++.++||+|++
T Consensus 149 ~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~-----~~~~~~~l~~~g~~~vvvt~G~~ 223 (295)
T cd01167 149 KAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEED-----PEEIAALLLLFGLKLVLVTRGAD 223 (295)
T ss_pred HcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCC-----HHHHHHHHhhcCCCEEEEecCCc
Confidence 999999999984321 1 135678999999999999999988542 23445667788999999999999
Q ss_pred CeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHhcccCCC
Q 017101 295 GSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGK-------SREECLRFAAAAASLCVQVKGAI 361 (377)
Q Consensus 295 G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~-------~l~~al~~a~~aAa~~~~~~G~~ 361 (377)
|++++..+ +.+++|++ ..+++|||||||+|+|||+++|++|+ ++++|+++|+++|+.+|++.|++
T Consensus 224 G~~~~~~~-~~~~~~a~-~~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~~ 295 (295)
T cd01167 224 GALLYTKG-GVGEVPGI-PVEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEALRFANAVGALTCTKAGAI 295 (295)
T ss_pred ceEEEECC-cceeeCCC-CcceeeCCCccHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHhhHHHhcccCCC
Confidence 99877554 46788887 57899999999999999999999999 99999999999999999999863
No 32
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=5.8e-42 Score=319.71 Aligned_cols=295 Identities=22% Similarity=0.317 Sum_probs=233.7
Q ss_pred EEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCccc
Q 017101 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDY 149 (377)
Q Consensus 70 I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~ 149 (377)
+.+..++++|+++.++++|.++ ...+......+||++.|+|+++++||.++.++|.+|+ .+|+++++.|++ ||++++
T Consensus 3 ~~~t~np~~D~~~~~~~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~-gI~~~~ 79 (309)
T PRK13508 3 LTVTLNPSIDISYPLDELKLDT-VNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD-QIKHAF 79 (309)
T ss_pred EEEecChHHeEEEEeCCeeeCC-eEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc-CCCceE
Confidence 4577899999999999996664 5566677899999999999999999999999999996 689999999999 999987
Q ss_pred EEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCC-cCcCchhHHHHhhcCEEEEccCCC----HHHHHHHHHHHHh
Q 017101 150 MNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWP-EKFGDEDLEVVKKAGIVLLQREIP----DSVNIQVAKAARS 224 (377)
Q Consensus 150 v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~a~~ 224 (377)
+.. ++ +|+.++++++ +|+++++...++...... ..+.....+.+..++++++++..+ .+....+++.+++
T Consensus 80 ~~~---~~-~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~ 154 (309)
T PRK13508 80 YKI---KG-ETRNCIAILH-EGQQTEILEKGPEISVQEADGFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELANQ 154 (309)
T ss_pred EEC---CC-CCeeeEEEEe-CCCEEEEECCCCCCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 654 33 5777777775 788888766654321000 011111224578899999988654 3557788899999
Q ss_pred CCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCC-CHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCC
Q 017101 225 AGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTD-SYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGE 303 (377)
Q Consensus 225 ~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~-~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~ 303 (377)
.|+++++|++..........+.++|++++|++|++.++|.+.. +.+++.+.++.+...|++.|++|+|++|++++.. +
T Consensus 155 ~g~~v~~D~~~~~~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vvvT~G~~G~~~~~~-~ 233 (309)
T PRK13508 155 AGKPVVLDCSGAALQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLFEGIEWIIVSLGADGAFAKHN-D 233 (309)
T ss_pred CCCEEEEECCcHHHHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCceEEEeC-C
Confidence 9999999997532111112246899999999999999986542 4456667777777779999999999999977654 4
Q ss_pred eeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 304 KPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 304 ~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
+.++.|++ .++++|||||||+|+|||+++|++|+++++|+++|+++|++++++.+.. ..+++++++++++
T Consensus 234 ~~~~~~~~-~v~vvDttGAGDaF~Agfi~~l~~g~~~~~al~~a~a~aa~~~~~~~~~--~~~~~~~~~~~~~ 303 (309)
T PRK13508 234 TFYKVDIP-KIEVVNPVGSGDSTVAGIASGLLHQEDDADLLKKANVLGMLNAQEKQTG--HVNMANYDELYNQ 303 (309)
T ss_pred ceEEEeCC-CccccCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCcC--CCCHHHHHHHHhc
Confidence 46667765 6789999999999999999999999999999999999999999999874 5888999998865
No 33
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=1e-41 Score=318.53 Aligned_cols=293 Identities=22% Similarity=0.296 Sum_probs=241.1
Q ss_pred EE-EEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 70 LV-VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 70 I~-viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
|+ |.=++++|+++.++++| .++.........++||++.|+|.++++||.++.++|.+|+|..|++ .+.|++.||++.
T Consensus 5 ~~~~~~~p~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~~~gv~~~ 82 (312)
T PRK09513 5 VATITLNPAYDLVGFCPEIE-RGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFSELGIANR 82 (312)
T ss_pred EEEEecChHHeEEEEcCcee-cCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHHHcCCCcc
Confidence 55 55599999999999997 5888888999999999999999999999999999999999999987 588999999987
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcC---chhHHHHhhcCEEEEccCCC----HHHHHHHHHH
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFG---DEDLEVVKKAGIVLLQREIP----DSVNIQVAKA 221 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~---~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~ 221 (377)
+++ . ++ +|+.++.+++.+|+++.+...+.. ..+..+. ....+.+++++++++++..+ .+....+++.
T Consensus 83 ~~~-~--~~-~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~~~~~~~~~ 156 (312)
T PRK09513 83 FQV-V--QG-RTRINVKLTEKDGEVTDFNFSGFE--VTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEAFTDWMTR 156 (312)
T ss_pred EEE-C--CC-CCEEEEEEEeCCCcEEEEeCCCCC--CCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHHHHHHHHHH
Confidence 664 3 34 688888888888888876654432 1111111 11234578999999988655 3567788889
Q ss_pred HHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEe
Q 017101 222 ARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVE 301 (377)
Q Consensus 222 a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~ 301 (377)
+++.|.++++|++.. .....+....+++++|++|+..+++....+.+++.++++.+.+.|++.|++|+|++|++++..
T Consensus 157 a~~~g~~v~~D~~~~--~~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 234 (312)
T PRK09513 157 LRSQCPCIIFDSSRE--ALVAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHVVISLGAEGALWVNA 234 (312)
T ss_pred HHhcCCEEEEECChH--HHHHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCcEEEeC
Confidence 999999999999752 223344567889999999999999977666677778888888899999999999999987765
Q ss_pred CCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 302 GEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 302 ~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
++ .++.+++ .++++||+||||+|+|||+++|++|+++++|+++|+++|++++++.| .++|+++|+++++.+
T Consensus 235 ~~-~~~~~~~-~~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~~~A~a~Aa~~~~~~~--~~~~~~~e~~~~l~~ 305 (312)
T PRK09513 235 SG-EWIAKPP-ACDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVSALAVSQSN--VGITDRPQLAAMMAR 305 (312)
T ss_pred Cc-eEEecCC-CccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCC--CCCCCHHHHHHHHhc
Confidence 54 4566665 57899999999999999999999999999999999999999999997 478999999999865
No 34
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=1.4e-41 Score=316.33 Aligned_cols=289 Identities=31% Similarity=0.437 Sum_probs=238.1
Q ss_pred cceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcccEEecc
Q 017101 75 SANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVK 154 (377)
Q Consensus 75 ~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~ 154 (377)
++.+|+++.++++ ..++.........++||.+.|+|.++++||.++.++|.+|+| .|+.+++.|++.||++.++...
T Consensus 7 ~~~~D~~~~~~~~-~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~gI~~~~i~~~- 83 (303)
T TIGR03168 7 NPAIDLTIEVDGL-TPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEGIKNDFVEVK- 83 (303)
T ss_pred chHHeEEEEcCcc-ccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcCCCceEEECC-
Confidence 5678999999996 667888888888999999999999999999999999999998 7999999999999999988754
Q ss_pred CCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcC---chhHHHHhhcCEEEEccC----CCHHHHHHHHHHHHhCCC
Q 017101 155 DGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFG---DEDLEVVKKAGIVLLQRE----IPDSVNIQVAKAARSAGV 227 (377)
Q Consensus 155 ~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~---~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~a~~~g~ 227 (377)
. +|+.++.+.+++|+++.+...+.. ..+..+. ....+.+++++++++++. .+.+....+++.++++|.
T Consensus 84 -~--~t~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~ 158 (303)
T TIGR03168 84 -G--ETRINVKIKESSGEETELNEPGPE--ISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGA 158 (303)
T ss_pred -C--CCEEeEEEEeCCCCEEEEeCcCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2 577777777778877766544332 1111121 111134788999999764 345677888999999999
Q ss_pred cEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEE
Q 017101 228 PVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIK 307 (377)
Q Consensus 228 ~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~ 307 (377)
++++|++.. ...+.+..++|++++|++|+..+++....+.+++.++++.+.+++++.+|||+|++|++++..+ +.++
T Consensus 159 ~v~~D~~~~--~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~~~~~-~~~~ 235 (303)
T TIGR03168 159 KVILDTSGE--ALREALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVSLGADGALLVTKE-GALK 235 (303)
T ss_pred EEEEECCcH--HHHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEeecCCCcEEEeCC-ceEE
Confidence 999999753 2223344679999999999999999766566677788888888899999999999999877655 4677
Q ss_pred eccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhhC
Q 017101 308 QSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQYA 377 (377)
Q Consensus 308 ~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~~ 377 (377)
+|++ ..+++||+||||+|.|||++++++|+++++|+++|+++|+.++++.|+. +|+++++++++.++
T Consensus 236 ~~~~-~~~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~A~~~aa~~~~~~G~~--~~~~~~~~~~~~~~ 302 (303)
T TIGR03168 236 ATPP-KVEVVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAGSAAAFSPGTG--LPDPEDVEELLDQV 302 (303)
T ss_pred eeCC-cceeecCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcC--CCCHHHHHHHHhhc
Confidence 8876 5788999999999999999999999999999999999999999999985 59999999998875
No 35
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=3.3e-41 Score=314.58 Aligned_cols=295 Identities=21% Similarity=0.311 Sum_probs=235.5
Q ss_pred EEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcccE
Q 017101 71 VVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYM 150 (377)
Q Consensus 71 ~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v 150 (377)
.|.=++++|+++.++++|.++ .....+...++||++.|+|++|++||.++.++|.+|+ .+|+++++.|++.||+++++
T Consensus 3 ~~~~~p~~d~~~~~~~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~-~~G~~i~~~l~~~GV~~~~~ 80 (309)
T TIGR01231 3 TVTLNPSVDISYPLTALKLDT-VNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGG-KLGEFIEKELDHSDIKHAFY 80 (309)
T ss_pred EEEcchHHeEEEEcCCeeeCc-eEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHHcCCceeEE
Confidence 455578899999999987776 5577888899999999999999999999999999997 49999999999999999988
Q ss_pred EeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCC-cCcCchhHHHHhhcCEEEEccCC----CHHHHHHHHHHHHhC
Q 017101 151 NVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWP-EKFGDEDLEVVKKAGIVLLQREI----PDSVNIQVAKAARSA 225 (377)
Q Consensus 151 ~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~a~~~ 225 (377)
... + +|+.++.++. +|+++++...+++..... ..+.+...+.+..++++++++.. +...+.++++.+++.
T Consensus 81 ~~~--~--~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~ 155 (309)
T TIGR01231 81 KIS--G--ETRNCIAILH-EGQQTEILEQGPEISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERCQNK 155 (309)
T ss_pred ECC--C--CCEEeEEEEe-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHHHhC
Confidence 754 3 4666766664 688888776665321100 01111223457889999998864 346778899999999
Q ss_pred CCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCC-CCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCe
Q 017101 226 GVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPT-DSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEK 304 (377)
Q Consensus 226 g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~-~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~ 304 (377)
|+++++|+++.........+.++|++++|++|++.+++... .+.+++.++++.+...|++.|++|+|++|++++..+ +
T Consensus 156 g~~v~~D~~~~~~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~~G~~~~~~~-~ 234 (309)
T TIGR01231 156 GVPVVLDCSGATLQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQPLFSGIEWIIVSLGAQGAFAKHGH-T 234 (309)
T ss_pred CCeEEEECChHHHHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCceEEEeCC-e
Confidence 99999999864211112335689999999999999998653 244566777777777899999999999999876544 4
Q ss_pred eEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 305 PIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 305 ~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
.+++|++ .++++|||||||+|+|||+++|++|+++++|+++|+++|++++++.+. +..++++++++.++
T Consensus 235 ~~~~~~~-~v~vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~aa~~~~~~~~--~~~~~~~~~~~~~~ 303 (309)
T TIGR01231 235 FYKVNIP-TISVVNPVGSGDSTVAGITSALLNHESDHDLLKKANTLGMLNAQEAQT--GHVNLNNYDDLFNQ 303 (309)
T ss_pred eEEeeCC-ccCcCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--CCCCHHHHHHHHhc
Confidence 5677765 678999999999999999999999999999999999999999998876 45888999888765
No 36
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=3.7e-41 Score=307.49 Aligned_cols=261 Identities=24% Similarity=0.326 Sum_probs=214.7
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+|+|+|++++|++... ...++||++.|+|.++++||.++.++|.+|+|..|+++++.|++.||+++
T Consensus 1 ~v~~iG~~~~D~~~~~--------------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~ 66 (264)
T cd01940 1 RLAAIGDNVVDKYLHL--------------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGVDIS 66 (264)
T ss_pred CeEEEcceEEEEeccC--------------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHHcCCChh
Confidence 6899999999998431 35789999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEEC-CCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCC
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG-GTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGV 227 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ 227 (377)
++... ++ +|+.++++ .++|+|++..+. ++.....+. +.....+..++++++++..+.+...++++.+++.++
T Consensus 67 ~v~~~--~~-~t~~~~~~-~~~g~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~ 139 (264)
T cd01940 67 HCRVK--EG-ENAVADVE-LVDGDRIFGLSNKGGVAREHPF---EADLEYLSQFDLVHTGIYSHEGHLEKALQALVGAGA 139 (264)
T ss_pred heEEc--CC-CCceEEEE-ecCCceEEEeecCCcHHhcccC---cccHhHHhcCCEEEEcccccHHHHHHHHHHHHHcCC
Confidence 99875 54 78888754 467888876653 322211111 233456789999999976666778889999999999
Q ss_pred cEEEcCCCCCCC-ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeE
Q 017101 228 PVIFDAGGMDAP-IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPI 306 (377)
Q Consensus 228 ~v~~D~~~~~~~-~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~ 306 (377)
+|++|++..+.. ....+++++|++++|++|... ++..++++.+.+.+++.+++|+|++|++++.+ ++.+
T Consensus 140 ~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~-~~~~ 209 (264)
T cd01940 140 LISFDFSDRWDDDYLQLVCPYVDFAFFSASDLSD---------EEVKAKLKEAVSRGAKLVIVTRGEDGAIAYDG-AVFY 209 (264)
T ss_pred EEEEcCcccCCHHHHHhhcccCCEEEechhhcCc---------chHHHHHHHHHHcCCCEEEEEECCCCeEEEeC-CeEE
Confidence 999999876432 235678999999999877521 24556677788889999999999999987764 4567
Q ss_pred EeccCCCCcccCccCchHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhcccCCC
Q 017101 307 KQSIIPAARVIDTTGAGDTFTASFAVGFVEGKS-REECLRFAAAAASLCVQVKGAI 361 (377)
Q Consensus 307 ~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~-l~~al~~a~~aAa~~~~~~G~~ 361 (377)
++|++ +++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.|++
T Consensus 210 ~~~~~-~~~~vDttGAGDaf~ag~i~~l~~g~~~~~~al~~a~~~aa~~~~~~G~~ 264 (264)
T cd01940 210 SVAPR-PVEVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFAAKTCGHEGAF 264 (264)
T ss_pred ecCCc-CCCCCCCCCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcccCCC
Confidence 77776 689999999999999999999999999 9999999999999999999963
No 37
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=4.6e-41 Score=310.87 Aligned_cols=278 Identities=30% Similarity=0.424 Sum_probs=230.0
Q ss_pred EEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCccc
Q 017101 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDY 149 (377)
Q Consensus 70 I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~ 149 (377)
-.++|++++|+++.++++| .++.....+....+||++.|+|.+|++||.++.++|.+|+| .|+++++.|++.||++.+
T Consensus 3 ~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~~gi~~~~ 80 (289)
T cd01164 3 YTVTLNPAIDLTIELDQLQ-PGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKEEGIPDDF 80 (289)
T ss_pred EEEecChHHeEEEEcCccc-CCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHHcCCCceE
Confidence 4688999999999999996 56888888889999999999999999999999999999998 899999999999999998
Q ss_pred EEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcC---chhHHHHhhcCEEEEccCCCH----HHHHHHHHHH
Q 017101 150 MNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFG---DEDLEVVKKAGIVLLQREIPD----SVNIQVAKAA 222 (377)
Q Consensus 150 v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~---~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~a 222 (377)
+... . +|+..+.+.+.+|+++.+...++. ..+..+. +...+.+++++++++++..+. .....+++.+
T Consensus 81 ~~~~--~--~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~ 154 (289)
T cd01164 81 VEVA--G--ETRINVKIKEEDGTETEINEPGPE--ISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELVRLA 154 (289)
T ss_pred EECC--C--CCEEEEEEEeCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHHHHHHHHHHH
Confidence 8764 2 477777777777777666544332 1111111 111133568999999987764 6777889999
Q ss_pred HhCCCcEEEcCCCCCCCChhhhh-ccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEe
Q 017101 223 RSAGVPVIFDAGGMDAPIPQELL-NFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVE 301 (377)
Q Consensus 223 ~~~g~~v~~D~~~~~~~~~~~ll-~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~ 301 (377)
++.++++++|++.. .. .+++ +++|++++|++|++.+++....+.+++.++++.+.+.+++.+++|+|++|++++..
T Consensus 155 ~~~~~~i~~D~~~~--~~-~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~ 231 (289)
T cd01164 155 REKGARVILDTSGE--AL-LAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVSLGADGALLVTK 231 (289)
T ss_pred HHcCCeEEEECChH--HH-HHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEcC
Confidence 99999999999753 22 2334 79999999999999999876666677888888899999999999999999987755
Q ss_pred CCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCC
Q 017101 302 GEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGA 360 (377)
Q Consensus 302 ~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~ 360 (377)
+ +.++++++ +.+++||+||||+|+|||++++++|+++++|+++|+++|+++|++.|+
T Consensus 232 ~-~~~~~~~~-~~~vvDttGAGDaf~a~~i~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 232 D-GVYRASPP-KVKVVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred C-cEEEecCC-CccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccC
Confidence 4 46677765 578999999999999999999999999999999999999999999885
No 38
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=2.9e-40 Score=325.40 Aligned_cols=297 Identities=26% Similarity=0.309 Sum_probs=230.5
Q ss_pred CCCEEEEccceeeeeecc--CCCC--CCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHh
Q 017101 67 PPPLVVVGSANFDIYVEI--DRLP--KVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSG 142 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v--~~~p--~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~ 142 (377)
.++|+|+|++++|+++.+ ++++ .+.+.+........+|| ++|+|.+|++||.++.++|.+|+|..|+++++.|++
T Consensus 10 ~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~ 88 (473)
T PRK11316 10 RAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLAA 88 (473)
T ss_pred CCcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHHH
Confidence 568999999999999874 4552 23345666777889999 699999999999999999999999999999999999
Q ss_pred CCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCC--HHHHHHHHH
Q 017101 143 CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIP--DSVNIQVAK 220 (377)
Q Consensus 143 ~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~ 220 (377)
.||+++++.. ++.+|+.++++++.+++.................+.....+.++.++++++++... ......+++
T Consensus 89 ~gI~~~~v~~---~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~~~~~~~~~~~~ 165 (473)
T PRK11316 89 VGVKCDFVSV---PTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALPSIGALVLSDYAKGALASVQAMIQ 165 (473)
T ss_pred cCCceeEEEc---CCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhccCCEEEEecCCccchhHHHHHHH
Confidence 9999998765 45689998888875443222111101000011111112234578899999875321 144678889
Q ss_pred HHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHH-hcCCCEEEEeeCCCCeEEE
Q 017101 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH-KMGVQQVLVKLGAKGSALF 299 (377)
Q Consensus 221 ~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~-~~g~~~vvvT~G~~G~~~~ 299 (377)
.+++.|+++++|+++.. ...++.+|++++|++|++.++|.. .+.++..++++.++ +.|++.++||+|++|++++
T Consensus 166 ~~k~~g~~vv~Dp~~~~----~~~~~~~dil~pN~~Ea~~l~g~~-~~~~~~~~~~~~l~~~~g~~~vvVT~G~~G~~~~ 240 (473)
T PRK11316 166 LARKAGVPVLIDPKGTD----FERYRGATLLTPNLSEFEAVVGKC-KDEAELVEKGMKLIADYDLSALLVTRSEQGMTLL 240 (473)
T ss_pred HHHhcCCeEEEeCCCCC----ccccCCCeEECcCHHHHHHHhCCC-CCHHHHHHHHHHHHHhcCCCEEEEEecCCCcEEE
Confidence 99999999999997542 234678999999999999999853 34445555555554 6799999999999999777
Q ss_pred EeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHh
Q 017101 300 VEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 300 ~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
.+++..+++|++ .++++||+||||+|.|||+++|++|+++++|+++|+++|++++++.|+.+ ++.++++++++
T Consensus 241 ~~~~~~~~~~~~-~v~vvDttGAGDaF~aa~~~~l~~g~~~~~al~~A~a~Aa~~v~~~G~~~--~~~~~l~~~l~ 313 (473)
T PRK11316 241 QPGKAPLHLPTQ-AREVYDVTGAGDTVISVLAAALAAGNSLEEACALANAAAGVVVGKLGTST--VSPIELENALR 313 (473)
T ss_pred ecCCceEEecCc-CCCCCCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccCCCcc--CCHHHHHHHHh
Confidence 665544677776 57899999999999999999999999999999999999999999999865 79999998876
No 39
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=298.43 Aligned_cols=292 Identities=28% Similarity=0.414 Sum_probs=246.5
Q ss_pred ccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcccEEec
Q 017101 74 GSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVV 153 (377)
Q Consensus 74 G~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~ 153 (377)
=++.+|+++.++++ +.++..+.......+||+|.|||+.|+.||.++..+|.+|.+ .|+++.+.|++.||...++.+.
T Consensus 7 LNPaiD~~~~l~~l-~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~ 84 (310)
T COG1105 7 LNPALDYTVFLDEL-ELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKDEGIPDAFVEVK 84 (310)
T ss_pred cChhHhheeecccc-cccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHhcCCCceEEEcc
Confidence 36788999999888 788999999999999999999999999999999999999995 8999999999999999998874
Q ss_pred cCCCCCCceEEEEEec-CCCeeEEEECCCCCCCCC-cCcCchhHHHHhhcCEEEEccCCC----HHHHHHHHHHHHhCCC
Q 017101 154 KDGGVPTGHAVVMLQS-DGQNSIIIVGGTNMSCWP-EKFGDEDLEVVKKAGIVLLQREIP----DSVNIQVAKAARSAGV 227 (377)
Q Consensus 154 ~~~~~~T~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~a~~~g~ 227 (377)
+ +|+.++.+.+. +|..|-+..+|+...... +.+.+.....+...|+++++|++| .+.+.++++.+++.|+
T Consensus 85 ---g-~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~ 160 (310)
T COG1105 85 ---G-DTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGA 160 (310)
T ss_pred ---C-CCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 3 79999999887 566777766665433111 111112223467789999999655 5788999999999999
Q ss_pred cEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEE
Q 017101 228 PVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIK 307 (377)
Q Consensus 228 ~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~ 307 (377)
+|++|.++. .+...+-...++++||.+|++.++|.+..+.+|..++++.++..|+++|+|++|++|++++..++ .++
T Consensus 161 ~vilD~Sg~--~L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~-~~~ 237 (310)
T COG1105 161 KVILDTSGE--ALLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGALLVTAEG-VYF 237 (310)
T ss_pred eEEEECChH--HHHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCC-eEE
Confidence 999999863 33333444689999999999999999988888999999999999999999999999998776654 566
Q ss_pred eccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhhC
Q 017101 308 QSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQYA 377 (377)
Q Consensus 308 ~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~~ 377 (377)
..++ +.++++|+||||++.|||++++.+++++++++++|+++|+.++++.|. +.|++++++++++++
T Consensus 238 a~~p-~~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~avA~g~a~~~~~~~--~~~~~~~~~~~~~~v 304 (310)
T COG1105 238 ASPP-KVQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAVACGAAAASQKGT--GIPDLDQLKKIYAQV 304 (310)
T ss_pred EeCC-CcceecCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHhhhe
Confidence 6544 689999999999999999999999999999999999999999999986 569999999888764
No 40
>PLN02548 adenosine kinase
Probab=100.00 E-value=4.4e-40 Score=310.13 Aligned_cols=272 Identities=24% Similarity=0.347 Sum_probs=210.5
Q ss_pred CCCCCCCeeeeCcceecCCChHHHHHH---HHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCce
Q 017101 86 RLPKVGETVAAKTSQTLAGGKGANQAA---CGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH 162 (377)
Q Consensus 86 ~~p~~~~~~~~~~~~~~~GG~~~NvA~---~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~ 162 (377)
++|.+++.+...+....+||++.|+|. .+++||.++.|+|.+|+|.+|+++++.|++.||+++++.. ++.+|+.
T Consensus 34 ~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~---~~~~T~~ 110 (332)
T PLN02548 34 HLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYED---ESTPTGT 110 (332)
T ss_pred HHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeecc---CCCCCce
Confidence 355666667777788999999999855 4466799999999999999999999999999999998753 5668999
Q ss_pred EEEEEecCCCeeEEEECCCCCCCCCcCcC-chhHHHHhhcCEEEEccC---CCHHHHHHHHHHHHhCCCcEEEcCCCCC-
Q 017101 163 AVVMLQSDGQNSIIIVGGTNMSCWPEKFG-DEDLEVVKKAGIVLLQRE---IPDSVNIQVAKAARSAGVPVIFDAGGMD- 237 (377)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~- 237 (377)
++++++ +|+|+++.+.+++.......+. ....+.+..++++++++. .+++....+++.+++++.++.+|++...
T Consensus 111 ~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~ 189 (332)
T PLN02548 111 CAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLSAPFI 189 (332)
T ss_pred EEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECCChhH
Confidence 998886 7899887766554332222222 112346788999998863 3567778888999999998888886321
Q ss_pred ----CCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHh------cCCCEEEEeeCCCCeEEEEeCCeeEE
Q 017101 238 ----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK------MGVQQVLVKLGAKGSALFVEGEKPIK 307 (377)
Q Consensus 238 ----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~------~g~~~vvvT~G~~G~~~~~~~~~~~~ 307 (377)
+..+.++++++|++++|++|++.+++....+.++..+.++.+.+ .+++.+|+|+|++|++++. +++.++
T Consensus 190 ~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~-~~~~~~ 268 (332)
T PLN02548 190 CEFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAE-DGKVKE 268 (332)
T ss_pred HHHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEE-CCeEEE
Confidence 12356788999999999999999988543222233344333332 1578999999999997765 445667
Q ss_pred eccC--CCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 017101 308 QSII--PAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIP 362 (377)
Q Consensus 308 ~~~~--~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~ 362 (377)
+|++ +..+++|||||||+|+|||+++|++|+++++|+++|+++|+++|++.|+.+
T Consensus 269 ~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~l~eal~~a~aaAa~~v~~~G~~~ 325 (332)
T PLN02548 269 FPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVIIQRSGCTY 325 (332)
T ss_pred eccccCCcCccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 7653 345789999999999999999999999999999999999999999999974
No 41
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=1.1e-40 Score=312.69 Aligned_cols=274 Identities=17% Similarity=0.207 Sum_probs=218.7
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHc-CC--Cc--eEEEEecCCccHHHHHHHHHhC
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKL-SH--PT--YFVGQVGEDANGKLITDALSGC 143 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~L-G~--~v--~li~~vG~D~~G~~i~~~l~~~ 143 (377)
+++++|++.+|.+...+. ......+||++.|+|+++++| |. ++ .+++.+|+| +|+++++.|++.
T Consensus 1 ~~~~~G~~~~d~i~~~~~----------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~ 69 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS----------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESW 69 (328)
T ss_pred CccccCcEEeeccccCCC----------CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhc
Confidence 478999999999865431 345678999999999999999 44 66 889999999 899999999999
Q ss_pred CCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCH--HHHHHHHHH
Q 017101 144 GVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPD--SVNIQVAKA 221 (377)
Q Consensus 144 gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~ 221 (377)
||++++ ... ++.+|+.++++++++|+|.++...+.+.......+.. ..+..++++++.+..+. +...++++.
T Consensus 70 GVd~~~-~~~--~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~---~~~~~a~~~hl~~~~~~~~~~~~~~~~~ 143 (328)
T cd01943 70 GTGMVF-RRD--PGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNS---TPLIRSSCIHLICSPERCASIVDDIINL 143 (328)
T ss_pred CCceEE-EeC--CCCcchhhhhhcCCCCcceeeecCccccccccccccc---ccccCCCeEEEECCHHHHHHHHHHHHHH
Confidence 999998 666 6778999998888889998887777664444444432 34678899999876543 667788888
Q ss_pred HHh------CCCcEEEcCCCCC-----CCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHH-----H---HHHhc
Q 017101 222 ARS------AGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAV-----V---KCHKM 282 (377)
Q Consensus 222 a~~------~g~~v~~D~~~~~-----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~-----~---~l~~~ 282 (377)
+++ .+.++++|++... +.....+++++|++++|++|++.+++....+.+...... . .+...
T Consensus 144 a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
T cd01943 144 FKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGILQD 223 (328)
T ss_pred HHhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhhhcc
Confidence 888 8888999987531 123568899999999999999999986543221111111 1 22456
Q ss_pred CCCEEEEeeCCCCeEEEEe-CCeeEEeccCCCC---cccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Q 017101 283 GVQQVLVKLGAKGSALFVE-GEKPIKQSIIPAA---RVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVK 358 (377)
Q Consensus 283 g~~~vvvT~G~~G~~~~~~-~~~~~~~~~~~~~---~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~ 358 (377)
+++.||||+|++|++++.. ++..+++|++ .+ +++|||||||+|+|||+++|++|+++++|+++|+++|++++++.
T Consensus 224 g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~-~v~~~~vvDttGAGDaF~agfl~~l~~g~~~~~al~~a~a~Aa~~v~~~ 302 (328)
T cd01943 224 PGGGVVLRCGKLGCYVGSADSGPELWLPAY-HTKSTKVVDPTGGGNSFLGGFAAGLALTKSIDEACIYGSVAASFAIEQV 302 (328)
T ss_pred CCCEEEEEeCCCCCEEEecCCCceEecCCc-cCCCCcccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccC
Confidence 8899999999999988764 4456778876 45 89999999999999999999999999999999999999999999
Q ss_pred CC
Q 017101 359 GA 360 (377)
Q Consensus 359 G~ 360 (377)
|.
T Consensus 303 G~ 304 (328)
T cd01943 303 GL 304 (328)
T ss_pred CC
Confidence 95
No 42
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=4.1e-39 Score=293.24 Aligned_cols=257 Identities=23% Similarity=0.298 Sum_probs=209.2
Q ss_pred CCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 68 PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 68 ~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
++|+++|++++|++...+ +.++||++.|+|.+|++||.++.++|.+|+|.+|+++++.|++.||++
T Consensus 1 ~~v~~iG~~~~D~~~~~~--------------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~~gI~~ 66 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG--------------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVDI 66 (260)
T ss_pred CeEEEeccceeeecccCC--------------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHHcCCcc
Confidence 579999999999985431 268999999999999999999999999999999999999999999999
Q ss_pred ccEEeccCCCCCCceEEEEEecCCCeeEEEEC-CCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC
Q 017101 148 DYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG-GTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (377)
Q Consensus 148 ~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g 226 (377)
+++.+. ++ +|+.+++.++ +++|++..+. +.... ..+++...+.+..++++++.... ....+++.+++++
T Consensus 67 ~~~~~~--~~-~t~~~~~~~~-~~~r~~~~~~~~~~~~---~~~~~~~~~~l~~~~~v~~~~~~---~~~~~~~~~~~~~ 136 (260)
T PRK09813 67 SHVHTK--HG-VTAQTQVELH-DNDRVFGDYTEGVMAD---FALSEEDYAWLAQYDIVHAAIWG---HAEDAFPQLHAAG 136 (260)
T ss_pred hheeee--cC-CCceEEEEEe-CCcEEeeccCCCcccc---cccCHHHHHHHHhCCEEEEeccc---hHHHHHHHHHHcC
Confidence 999876 54 6888877775 6788776543 22222 23344455678899999986422 1346777888999
Q ss_pred CcEEEcCCCCCC-CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCee
Q 017101 227 VPVIFDAGGMDA-PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKP 305 (377)
Q Consensus 227 ~~v~~D~~~~~~-~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~ 305 (377)
+++++|++..+. .....+++++|++++|+++ ...++.++++.+.+.|++.++||+|++|++++.. ++.
T Consensus 137 ~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~----------~~~~~~~~~~~~~~~g~~~viit~G~~Ga~~~~~-~~~ 205 (260)
T PRK09813 137 KLTAFDFSDKWDSPLWQTLVPHLDYAFASAPQ----------EDEFLRLKMKAIVARGAGVVIVTLGENGSIAWDG-AQF 205 (260)
T ss_pred CeEEEEcCCCccHHHHHHhCCceeEEEecCCc----------chHHHHHHHHHHHHcCCCEEEEEECCCceEEEEC-CEE
Confidence 999999986532 2346778999999887642 1234567777888889999999999999987754 457
Q ss_pred EEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCC
Q 017101 306 IKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGA 360 (377)
Q Consensus 306 ~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~ 360 (377)
+++|++ +.+++|||||||+|+|||++++.+|+++++|+++|+++|++++++.|+
T Consensus 206 ~~~~~~-~~~~vDttGAGDaF~ag~i~~~~~g~~~~~al~~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 206 WRQAPE-PVTVVDTMGAGDSFIAGFLCGWLAGMTLPQAMAQGTACAAKTIQYHGA 259 (260)
T ss_pred EecCCc-ccCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Confidence 788887 568999999999999999999999999999999999999999999986
No 43
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.6e-36 Score=282.99 Aligned_cols=266 Identities=18% Similarity=0.175 Sum_probs=213.6
Q ss_pred CCCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCC
Q 017101 65 NTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (377)
Q Consensus 65 ~~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~g 144 (377)
.+.++|+|||++++|+++.+ +.. ....+||++.|+|.++++||.++.++|.+|+|.. .+
T Consensus 9 ~~~~~vlvvG~~~~D~i~~~------g~~-----~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~----------~~ 67 (335)
T PLN02630 9 IPQRRVLIVGNYCHDVLIQN------GSV-----TAESLGGAASFISNVLDALSVECELVSKVGPDFL----------YQ 67 (335)
T ss_pred CCCCCEEEEeeeeeeEEEeC------CcE-----EEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc----------cc
Confidence 34789999999999999764 221 3578999999999999999999999999999952 37
Q ss_pred CCcccEEeccCCCCCCceEEEEEec-----CCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHH
Q 017101 145 VRLDYMNVVKDGGVPTGHAVVMLQS-----DGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVA 219 (377)
Q Consensus 145 Vd~~~v~~~~~~~~~T~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (377)
|+...+.. ++.+|+.++.++++ +|+++++...+++....+.++... .+..++++++.+..+++....++
T Consensus 68 v~~~~~~~---~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~~---~~~~~~~~~l~~ei~~e~~~~~~ 141 (335)
T PLN02630 68 VSHPPIVI---PDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDM---RYEFGMAVGVAGEILPETLERMV 141 (335)
T ss_pred ccccceec---CCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCHH---HhcccceeeecCCCcHHHHHHHH
Confidence 77654433 45679999888876 568888888888877665555432 46777888898888888888899
Q ss_pred HHHHh-----CCCcEEEcCCCC-CC--C----ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEE
Q 017101 220 KAARS-----AGVPVIFDAGGM-DA--P----IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQV 287 (377)
Q Consensus 220 ~~a~~-----~g~~v~~D~~~~-~~--~----~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~v 287 (377)
+.++. +|+.+++|+... .+ . ...++++++|++++|++|+..+ +.++ +. + ...|
T Consensus 142 ~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~~iDil~~ne~Ea~~l------~~~~---~~----~--~~~v 206 (335)
T PLN02630 142 EICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLPRIGFLKASSEEALFI------DVEE---VR----Q--KCCV 206 (335)
T ss_pred HHhhhheeccCceEEecCCcccccccchhhHHHHHHHHHhCCEEEecHHHHhhc------CHHH---Hc----c--CCEE
Confidence 98888 788999999763 11 1 1347899999999999999876 1111 11 2 2379
Q ss_pred EEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCH
Q 017101 288 LVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDR 367 (377)
Q Consensus 288 vvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~ 367 (377)
+||+|++|++++.+++ .+++|++ +++++|||||||+|+|||++++++|+++++|+++|+++|++++++.|. ...++
T Consensus 207 vvt~G~~G~~~~~~~~-~~~~~~~-~v~~vDttGAGDaF~agfi~~l~~g~~~~~a~~~A~a~aa~~v~~~G~--~~~~~ 282 (335)
T PLN02630 207 IVTNGKKGCRIYWKDG-EMRVPPF-PAIQVDPTGAGDSFLGGFVAGLVQGLAVPDAALLGNYFGSLAVEQVGI--PKFDL 282 (335)
T ss_pred EEEECCCceEEEECCe-eEEeCCC-CCCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcCCC--CCCCH
Confidence 9999999998876554 6778876 578999999999999999999999999999999999999999999995 33699
Q ss_pred HHHHHHHhh
Q 017101 368 KSVLNLLQY 376 (377)
Q Consensus 368 e~i~~~l~~ 376 (377)
+++++++++
T Consensus 283 ~~l~~~~~~ 291 (335)
T PLN02630 283 RQLQRVKDE 291 (335)
T ss_pred HHHHHHhhc
Confidence 999998765
No 44
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.7e-37 Score=275.35 Aligned_cols=291 Identities=26% Similarity=0.338 Sum_probs=234.8
Q ss_pred CCCEEEEccceeeeeec--cCCCCCCCC--eeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHh
Q 017101 67 PPPLVVVGSANFDIYVE--IDRLPKVGE--TVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSG 142 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~--v~~~p~~~~--~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~ 142 (377)
+.+|+|+|++++|.|++ +++++++.+ .+.+.....++|| ++|||.|++.||.++.++|.+|+|..|+.+.+.|..
T Consensus 10 ~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGG-AaNVa~NiasLGa~a~l~GvvG~Deag~~L~~~l~~ 88 (467)
T COG2870 10 QAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGG-AANVAKNIASLGANAYLVGVVGKDEAGKALIELLKA 88 (467)
T ss_pred CCcEEEEcceeeeeeccccccccCCCCCCceEEeccccccccc-HHHHHHHHHHcCCCEEEEEeeccchhHHHHHHHHHh
Confidence 68999999999999995 677766654 4556777789999 899999999999999999999999999999999999
Q ss_pred CCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCC--CCcCcCchhHHHHhhcCEEEEccCCCHH--HHHHH
Q 017101 143 CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSC--WPEKFGDEDLEVVKKAGIVLLQREIPDS--VNIQV 218 (377)
Q Consensus 143 ~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~l~~~~~~~l~~~~~~~~~~~~~~~--~~~~~ 218 (377)
.+|+..++. . ++++|.....++.. +++++..+-.+... ....+.+...+.+...+.++++..--.- .+..+
T Consensus 89 ~~i~~~l~~-~--~~r~T~~K~Rv~s~--nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~~q~~ 163 (467)
T COG2870 89 NGIDSDLLR-D--KNRPTIVKLRVLSR--NQQLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLTNVQKM 163 (467)
T ss_pred cCcccceEe-e--cCCCceeeeeeecc--cceEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEeccccccchhHHHH
Confidence 999965554 4 78899999988864 44444443211111 0112222334567889999998532211 15789
Q ss_pred HHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHH-hcCCCEEEEeeCCCCeE
Q 017101 219 AKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH-KMGVQQVLVKLGAKGSA 297 (377)
Q Consensus 219 ~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~-~~g~~~vvvT~G~~G~~ 297 (377)
++.||+.|+||.+||.+.+ .+.+..+.+++||..|+++..|....+ +++.+..+.|. +++...+++|++++|..
T Consensus 164 I~~ar~~~~pVLvDPKg~D----f~~Y~GAtLiTPN~~E~~~~vg~~~~e-~el~~~g~kL~~~~~L~alLvTRsE~GMt 238 (467)
T COG2870 164 IDLAREAGIPVLVDPKGKD----FEKYRGATLITPNLKEFEEAVGKCKSE-EELEERGQKLKEELDLSALLVTRSEKGMT 238 (467)
T ss_pred HHHHHHcCCcEEECCCCcc----hhhhCCCeecCCCHHHHHHHHcccccH-HHHHHHHHHHHHhhCcceEEEEeccCCce
Confidence 9999999999999998753 346788999999999999999987554 55666555555 56889999999999999
Q ss_pred EEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHH
Q 017101 298 LFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLN 372 (377)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~ 372 (377)
++..+.. .|+|+. ..++.|.|||||+.+|.|..+++.|.++++|+.+||+||+.++.+.|+. ..+.+|+..
T Consensus 239 L~~~~~~-~h~pt~-AkEVyDVTGAGDTVIa~la~~laaG~s~~eAc~lAN~AagiVVgKlGTa--tvs~~EL~n 309 (467)
T COG2870 239 LFQEGKP-LHFPAR-AKEVYDVTGAGDTVIAVLAAALAAGASLEEACELANAAAGIVVGKLGTA--TVSPEELEM 309 (467)
T ss_pred eecCCcc-cccchh-heeeeeccCCCchHHHHHHHHHHcCCCHHHHHHHhhhhcceEEeeccce--eecHHHHHh
Confidence 9987764 888887 7899999999999999999999999999999999999999999999985 478888876
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.9e-36 Score=277.04 Aligned_cols=265 Identities=23% Similarity=0.266 Sum_probs=200.6
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
.|+|+|++++|++... . + .....+||++.|+|.++++|| ++.++|.+|+| .|+.+++.|++.||+++
T Consensus 1 ~v~~~G~~~~D~~~~~----~-~------~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~ 67 (277)
T cd01946 1 SLLVVGSVAFDAIETP----F-G------KVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTL 67 (277)
T ss_pred CeEEEEEeeeeeecCC----C-c------eeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHhccCcce
Confidence 4899999999998211 1 1 134679999999999999998 69999999999 89999999999999999
Q ss_pred cEEeccCCCCCCceEEEEE--ecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC
Q 017101 149 YMNVVKDGGVPTGHAVVML--QSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g 226 (377)
++++. ++.+|....... +.+++++.....+.. ..+.+...+.++.++++++++ .+++...++++.+++.
T Consensus 68 ~v~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~- 138 (277)
T cd01946 68 GLLSK--EDGKTFHWAGRYHYDLNEADTLDTDLNVF-----ADFDPQLPEHYKDSEFVFLGN-IAPELQREVLEQVKDP- 138 (277)
T ss_pred eEEEe--cCCCeEEEeeEehhhcccccchhhhhhHH-----hhcCCCChHHhhcCCEEEECC-CCHHHHHHHHHHHHhC-
Confidence 99887 554552211000 001222211110000 122222235578899999965 4667777888888877
Q ss_pred CcEEEcCCCCCC----CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeC
Q 017101 227 VPVIFDAGGMDA----PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEG 302 (377)
Q Consensus 227 ~~v~~D~~~~~~----~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 302 (377)
.++++|+...+. ....++++++|++++|++|++.+++.. +..++++.+.+.+++.|++|+|.+|++++.++
T Consensus 139 ~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~-----~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 213 (277)
T cd01946 139 KLVVMDTMNFWISIKPEKLKKVLAKVDVVIINDGEARQLTGAA-----NLVKAARLILAMGPKALIIKRGEYGALLFTDD 213 (277)
T ss_pred CEEEEccHHHhhhhhHHHHHHHhccCCEEeCCHHHHHHHhCCc-----hHHHHHHHHHHcCCCEEEEecCCCcEEEEECC
Confidence 889999853321 234678899999999999999998743 56677788888999999999999999877654
Q ss_pred CeeEEeccCCCCcccCccCchHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHhcccCCC
Q 017101 303 EKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG-----KSREECLRFAAAAASLCVQVKGAI 361 (377)
Q Consensus 303 ~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g-----~~l~~al~~a~~aAa~~~~~~G~~ 361 (377)
+.+++|+++..+++|||||||+|.|||+++|.+| .++++|+++|+++|+++|++.|+.
T Consensus 214 -~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~~ 276 (277)
T cd01946 214 -GYFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQKDTSEANMRRAIIYGSAMASFCVEDFGTK 276 (277)
T ss_pred -ceEEcCCcccCccCCCCCchHHHHHHHHHHHHhCCCcchhhHHHHHHHhHHHHhhhhhhcCCC
Confidence 4677777643358999999999999999999988 469999999999999999999964
No 46
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=4.9e-36 Score=272.08 Aligned_cols=248 Identities=22% Similarity=0.293 Sum_probs=193.7
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+|+++|++++|++...+ .....+||++.|+|+++++||.++.++|.+|+|..|+ ++.|++.||++.
T Consensus 1 ~il~iG~~~iD~~~~~~------------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~~~gv~~~ 66 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG------------SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLFDNGIEVI 66 (254)
T ss_pred CeEEEcceeEEEEecCC------------ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHHHCCcEEE
Confidence 68999999999997532 2367899999999999999999999999999999998 688999999964
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCc
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 228 (377)
.+ . .. .|+.+++.++.+|++++....+.+.... .. ...+.+++++++++ .+++....+.+. ..+
T Consensus 67 ~~--~--~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~ 130 (254)
T cd01937 67 SL--L--ST-ETTTFELNYTNEGRTRTLLAKCAAIPDT---ES---PLSTITAEIVILGP-VPEEISPSLFRK----FAF 130 (254)
T ss_pred Ee--c--CC-CeEEEEEEecCCCCeeeeeccccCCccc---cc---ccccCcccEEEECC-CcchhcHHHHhh----hhh
Confidence 32 2 23 5666666677777888777665432211 11 13467889999865 455444444333 278
Q ss_pred EEEcCCCCCCC------ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeC
Q 017101 229 VIFDAGGMDAP------IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEG 302 (377)
Q Consensus 229 v~~D~~~~~~~------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 302 (377)
|++|+++.++. ...++++++|++++|++|++.+ . +..++++.+.++|++.+++|+|++|++++..+
T Consensus 131 v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~-----~---~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~ 202 (254)
T cd01937 131 ISLDAQGFLRRANQEKLIKCVILKLHDVLKLSRVEAEVI-----S---TPTELARLIKETGVKEIIVTDGEEGGYIFDGN 202 (254)
T ss_pred eeEccccceeeccccchHHHhhcccCcEEEEcHHHHhhc-----C---CHHHHHHHHHHcCCCEEEEeeCCcceEEEECC
Confidence 99999864221 1247889999999999999883 1 34566777888899999999999999887665
Q ss_pred CeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Q 017101 303 EKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQ 356 (377)
Q Consensus 303 ~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~ 356 (377)
+ .++++++ +.+++|||||||+|+|||++++.+|+++++|+++|+++|+++++
T Consensus 203 ~-~~~~~~~-~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 203 G-KYTIPAS-KKDVVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAAAAKFIE 254 (254)
T ss_pred c-cEEcccc-CceeccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 4 5677776 57889999999999999999999999999999999999999874
No 47
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-34 Score=254.21 Aligned_cols=288 Identities=24% Similarity=0.338 Sum_probs=223.1
Q ss_pred CEEEEccceeeeeeccCC-----CC-CCCCee--------------eeCcceecCCChHHHHHHHHHHcCC---CceEEE
Q 017101 69 PLVVVGSANFDIYVEIDR-----LP-KVGETV--------------AAKTSQTLAGGKGANQAACGAKLSH---PTYFVG 125 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~-----~p-~~~~~~--------------~~~~~~~~~GG~~~NvA~~la~LG~---~v~li~ 125 (377)
-.+.+|++.+|+...++. ++ +.+..+ ........+||++.|+++.+++++. .+.++|
T Consensus 8 il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~G 87 (343)
T KOG2854|consen 8 ILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFG 87 (343)
T ss_pred eeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEe
Confidence 456689999999987753 22 222222 2233568899999999999999986 899999
Q ss_pred EecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCc-CchhHHHHhhcCEE
Q 017101 126 QVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKF-GDEDLEVVKKAGIV 204 (377)
Q Consensus 126 ~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l-~~~~~~~l~~~~~~ 204 (377)
.+|.|.+|+++.+.+++.||+.++... ++.+||+|.++++.++ |++..+-++......+.+ .++++..+.++.++
T Consensus 88 svG~Dk~ge~l~~~~~~aGv~~~yq~~---~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~lveka~v~ 163 (343)
T KOG2854|consen 88 SVGKDKFGELLKSKARAAGVNVHYQVK---EDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWALVEKAKVF 163 (343)
T ss_pred eccCchHHHHHHHHHHhcCceEEEEec---cCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhhhhhheeEE
Confidence 999999999999999999999987655 5679999999999776 888888777766666666 34567889999999
Q ss_pred EEccC---CCHHHHHHHHHHHHhCCCcEEEcCCCC-----CCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHH
Q 017101 205 LLQRE---IPDSVNIQVAKAARSAGVPVIFDAGGM-----DAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAV 276 (377)
Q Consensus 205 ~~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~-----~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~ 276 (377)
++.+. ..++++..+.+.+.+.+.+.+++++.. ..+.+..+++++|+++.|++|++.+.....-...+..+.+
T Consensus 164 yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~eia 243 (343)
T KOG2854|consen 164 YVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKEIA 243 (343)
T ss_pred EEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHHHh
Confidence 99873 346788899999998888777777632 1223456789999999999999988643321112222222
Q ss_pred HHH---Hh---cCCCEEEEeeCCCCeEEEEeCCeeEE--eccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017101 277 VKC---HK---MGVQQVLVKLGAKGSALFVEGEKPIK--QSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAA 348 (377)
Q Consensus 277 ~~l---~~---~g~~~vvvT~G~~G~~~~~~~~~~~~--~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~ 348 (377)
..+ -+ ...+++++|.|.+++.+... ++... +.+.+..+++||+||||+|.+||+++|.+|.++++|++.|+
T Consensus 244 ~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~-~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~l~~cir~g~ 322 (343)
T KOG2854|consen 244 LKLSALPKVNGTRPRTVVITQGPDPVIVAED-GKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKSLEECIRAGS 322 (343)
T ss_pred hHhhccccccccccceEEEccCCCceEEecC-CceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 22 24578999999999977655 44443 44445678999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCC
Q 017101 349 AAASLCVQVKGAI 361 (377)
Q Consensus 349 ~aAa~~~~~~G~~ 361 (377)
.+|+.+++..|+.
T Consensus 323 ~aa~~vi~~~G~~ 335 (343)
T KOG2854|consen 323 YAASHVIRRVGCT 335 (343)
T ss_pred HHhhheeeccCCC
Confidence 9999999999984
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-31 Score=224.70 Aligned_cols=281 Identities=17% Similarity=0.247 Sum_probs=222.6
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
++.|+++|.+.+|++..+|..|.++...+..+....-||.+.|+...++.||.++.|+|.+.....-+++++.|++.|||
T Consensus 4 ~k~VLcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~rgId 83 (308)
T KOG2947|consen 4 PKQVLCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRRRGID 83 (308)
T ss_pred cceEEEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEe-cCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHH-H-
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQ-SDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAA-R- 223 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a-~- 223 (377)
+++.... .. ..+...++++ ..|.||++.+..........++.. -.+.+.+|+++....|.+.+.-+.... .
T Consensus 84 ishcpft--d~-~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~k---vdl~qy~WihfE~Rnp~etlkM~~~I~~~N 157 (308)
T KOG2947|consen 84 ISHCPFT--DH-SPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEK---VDLTQYGWIHFEARNPSETLKMLQRIDAHN 157 (308)
T ss_pred cccCccc--cC-CCCcceEEEecCCCceEEEEecCCCccccHHHhhh---cccceeeeEEEecCChHHHHHHHHHHHHhh
Confidence 9999886 44 3444444444 578899988766554433333321 236788999999988888664332221 1
Q ss_pred -----hCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhc---C-C-CEEEEeeCC
Q 017101 224 -----SAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKM---G-V-QQVLVKLGA 293 (377)
Q Consensus 224 -----~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~---g-~-~~vvvT~G~ 293 (377)
+.++.|++|.-.. ++....+...+|+++..++=++.+. .. ...+++..++.+ | . +.+|+-.++
T Consensus 158 ~r~pe~qrI~vSvd~en~-req~~~l~am~DyVf~sK~~a~~~g-fk-----s~rea~~~l~~r~~~~~pkpv~I~~w~~ 230 (308)
T KOG2947|consen 158 TRQPEEQRIRVSVDVENP-REQLFQLFAMCDYVFVSKDVAKHLG-FK-----SPREACEGLYGRVPKGKPKPVLICPWAS 230 (308)
T ss_pred cCCCccceEEEEEEecCc-HHHHHHHhhcccEEEEEHHHHhhhc-cC-----CHHHHHHHHHhhcccCCCCcEEEecccc
Confidence 1356788888543 2344567889999999998777663 22 223333333322 2 2 467888999
Q ss_pred CCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhcccCC
Q 017101 294 KGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVG-FVEGKSREECLRFAAAAASLCVQVKGA 360 (377)
Q Consensus 294 ~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~-l~~g~~l~~al~~a~~aAa~~~~~~G~ 360 (377)
+|+-....+++.++++++++.++|||.|+||+|.|||+|+ +.++.++.||+.||+++|+.+++..|-
T Consensus 231 eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l~eAvdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 231 EGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRSLAEAVDFGNRVASKKLGGQGF 298 (308)
T ss_pred ccccccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhhHHHHHHHHHHhhhcccccccc
Confidence 9998888888999999998899999999999999999999 678999999999999999999998774
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.97 E-value=4.8e-30 Score=223.42 Aligned_cols=191 Identities=34% Similarity=0.504 Sum_probs=165.0
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
.|+++|++++|+++.++++|.++...+.......+||++.|+|.++++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------------------- 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-----------------------
Confidence 489999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCH-HHHHHHHHHHHhCCC
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPD-SVNIQVAKAARSAGV 227 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~a~~~g~ 227 (377)
++++++++..+. +...++++.+++.++
T Consensus 58 ----------------------------------------------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~ 85 (196)
T cd00287 58 ----------------------------------------------------ADAVVISGLSPAPEAVLDALEEARRRGV 85 (196)
T ss_pred ----------------------------------------------------ccEEEEecccCcHHHHHHHHHHHHHcCC
Confidence 677777776664 667788899999999
Q ss_pred cEEEcCCCCCCCC----hhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCC
Q 017101 228 PVIFDAGGMDAPI----PQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGE 303 (377)
Q Consensus 228 ~v~~D~~~~~~~~----~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~ 303 (377)
++++|+....... ..++++++|++++|++|++.+++.+..+.++..++++.+.+.+++.+++|+|++|+.++..++
T Consensus 86 ~v~~D~~~~~~~~~~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~ 165 (196)
T cd00287 86 PVVLDPGPRAVRLDGEELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKGPKVVIVTLGEKGAIVATRGG 165 (196)
T ss_pred eEEEeCCccccccccchHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHhcCCCEEEEEECCCccEEEecCC
Confidence 9999998754322 356889999999999999999997666656677788888889999999999999998776355
Q ss_pred eeEEeccCCCCcccCccCchHHHHHHHHHHHh
Q 017101 304 KPIKQSIIPAARVIDTTGAGDTFTASFAVGFV 335 (377)
Q Consensus 304 ~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~ 335 (377)
..+++|++ ..+++||+||||+|+|||++++.
T Consensus 166 ~~~~~~~~-~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 166 TEVHVPAF-PVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred ceEEcCCc-cCCcccCCCchHHHHHHHHHHhC
Confidence 56777766 47899999999999999999873
No 50
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.83 E-value=1.9e-18 Score=157.60 Aligned_cols=162 Identities=21% Similarity=0.228 Sum_probs=129.1
Q ss_pred HHHHhh--cCEEEEccCCCHHHHHHHHHHHHhCCCc-EEEcCCCCC-------C-----CChhhhhccCceeccCHHHHh
Q 017101 195 LEVVKK--AGIVLLQREIPDSVNIQVAKAARSAGVP-VIFDAGGMD-------A-----PIPQELLNFIDILSPNESELG 259 (377)
Q Consensus 195 ~~~l~~--~~~~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~-------~-----~~~~~ll~~~dvl~~N~~E~~ 259 (377)
...+.+ .+.+.+.--...+....+.+.+++.+.+ +++||.... . ...+.+++++|+++||+.|++
T Consensus 65 ~~l~~d~~~~~ikiG~l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~ 144 (268)
T PRK12412 65 ETTIEGVGVDALKTGMLGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAY 144 (268)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHH
Confidence 344554 6777776555677788888888888876 999996321 1 113457899999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCe-----EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHH
Q 017101 260 RLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGS-----ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGF 334 (377)
Q Consensus 260 ~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~-----~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l 334 (377)
.|+|.+..+.+++.++++.+.+.|++.|+||.|..|. .++..++..++++.+ ..+.+||+||||+|.|+|+++|
T Consensus 145 ~L~g~~~~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~-~v~~~~t~GaGD~f~aa~aa~l 223 (268)
T PRK12412 145 QLSGVKINSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESE-KIDTTNTHGAGCTYSAAITAEL 223 (268)
T ss_pred HHhCcCCCCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeC-ccCCCCCCchHHHHHHHHHHHH
Confidence 9999876677788899999999999999999998753 234444444556654 6788999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHhcc
Q 017101 335 VEGKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 335 ~~g~~l~~al~~a~~aAa~~~~~ 357 (377)
++|+++++|+++|.++...++.+
T Consensus 224 ~~g~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 224 AKGKPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887775
No 51
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.81 E-value=1.6e-18 Score=156.96 Aligned_cols=156 Identities=21% Similarity=0.278 Sum_probs=124.7
Q ss_pred cCEEEEccCCCHHHHHHHHHHHHhCCC-cEEEcCCCCCC---C---------ChhhhhccCceeccCHHHHhhccCCCCC
Q 017101 201 AGIVLLQREIPDSVNIQVAKAARSAGV-PVIFDAGGMDA---P---------IPQELLNFIDILSPNESELGRLTGMPTD 267 (377)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~---~---------~~~~ll~~~dvl~~N~~E~~~l~g~~~~ 267 (377)
.+.+-+.--...+....+.+.+++++. ++++||..... . ..+.+++++|+++||..|++.|+|.+..
T Consensus 68 ~~aikiG~l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~ 147 (254)
T TIGR00097 68 VDAAKTGMLASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGTKIR 147 (254)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCCCCC
Confidence 455655433456778888899998888 69999863211 1 1235778999999999999999997766
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeeCC----CCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHH
Q 017101 268 SYEQISEAVVKCHKMGVQQVLVKLGA----KGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREEC 343 (377)
Q Consensus 268 ~~~~~~~~~~~l~~~g~~~vvvT~G~----~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~a 343 (377)
+.+++.++++.+.+.|++.|+||.|. +|..++..+++.++.+.+ ..+++|++||||+|.|+|+++|++|+++++|
T Consensus 148 ~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~GaGD~f~aalaa~la~g~~l~eA 226 (254)
T TIGR00097 148 TEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAP-RIETKNTHGTGCTLSAAIAANLAKGLSLKEA 226 (254)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEec-ccCCCCCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 66788889999999999999999997 345344444445666654 6788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 017101 344 LRFAAAAASLCVQV 357 (377)
Q Consensus 344 l~~a~~aAa~~~~~ 357 (377)
+++|++++...+..
T Consensus 227 ~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 227 VKEAKEFVTGAIRY 240 (254)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988875
No 52
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.79 E-value=8.3e-18 Score=151.40 Aligned_cols=154 Identities=22% Similarity=0.299 Sum_probs=121.0
Q ss_pred hcCEEEEccCCC-HHHHHHHHHHHHhC-CCcEEEcCCCCCC------------CChhhhhccCceeccCHHHHhhccCCC
Q 017101 200 KAGIVLLQREIP-DSVNIQVAKAARSA-GVPVIFDAGGMDA------------PIPQELLNFIDILSPNESELGRLTGMP 265 (377)
Q Consensus 200 ~~~~~~~~~~~~-~~~~~~~~~~a~~~-g~~v~~D~~~~~~------------~~~~~ll~~~dvl~~N~~E~~~l~g~~ 265 (377)
..+.+.+ |.+. .+....+.+.+++. +.++++||..... .....+++++|+++||..|++.|+|.+
T Consensus 68 ~~~~i~~-G~l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~ 146 (242)
T cd01169 68 PVDAIKI-GMLGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLE 146 (242)
T ss_pred CCCEEEE-CCCCCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCC
Confidence 4566666 4443 66777788888876 8899999964321 112345689999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeeCCCC----e-EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCH
Q 017101 266 TDSYEQISEAVVKCHKMGVQQVLVKLGAKG----S-ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSR 340 (377)
Q Consensus 266 ~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G----~-~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l 340 (377)
..+.++..++++.+.+.|++.|+||.|..| . +++. +++.++++.+ ..+++|++|+||+|.|+|+++|++|+++
T Consensus 147 ~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~GaGD~f~a~l~a~l~~g~~~ 224 (242)
T cd01169 147 IATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYD-GGGFFEFESP-RIDTKNTHGTGCTLSSAIAANLAKGLSL 224 (242)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEE-CCcEEEEecc-eeCCCCCCChHHHHHHHHHHHHHCCCCH
Confidence 666667777888888999999999999985 3 3444 4445666665 5668999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 017101 341 EECLRFAAAAASLCVQ 356 (377)
Q Consensus 341 ~~al~~a~~aAa~~~~ 356 (377)
++|+++|++.-...+.
T Consensus 225 ~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 225 EEAVREAKEYVTQAIR 240 (242)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998776654
No 53
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.79 E-value=9.3e-18 Score=152.05 Aligned_cols=216 Identities=22% Similarity=0.330 Sum_probs=145.2
Q ss_pred ceEEEEecCCccH-HHHHHHHHh---CCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHH
Q 017101 121 TYFVGQVGEDANG-KLITDALSG---CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLE 196 (377)
Q Consensus 121 v~li~~vG~D~~G-~~i~~~l~~---~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (377)
..+++.-|.|..| .=+...++- .|+ .+..+.+++...+..|. .+... . ...+.+ .++
T Consensus 4 ~~vl~iag~d~~ggaG~~aD~~~~~~~~~----------~~~~~~t~~t~~~~~G~-~v~~~--~-----~~~l~~-~l~ 64 (253)
T PRK12413 4 NYILAISGNDIFSGGGLHADLATYTRNGL----------HGFVAVTCLTAMTEKGF-EVFPV--D-----KEIFQQ-QLD 64 (253)
T ss_pred CeEEEEeeeCCCCHHHHHHHHHHHHHcCC----------ccCeeeEEEecccCCce-EEEEC--C-----HHHHHH-HHH
Confidence 4567777877554 334444443 333 23345555565665663 22111 0 012221 222
Q ss_pred HHhhcCEEEEc-cCCC-HHHHHHHHHHHH-hCCCcEEEcCCCCCCCC-----------hhhhhccCceeccCHHHHhhcc
Q 017101 197 VVKKAGIVLLQ-REIP-DSVNIQVAKAAR-SAGVPVIFDAGGMDAPI-----------PQELLNFIDILSPNESELGRLT 262 (377)
Q Consensus 197 ~l~~~~~~~~~-~~~~-~~~~~~~~~~a~-~~g~~v~~D~~~~~~~~-----------~~~ll~~~dvl~~N~~E~~~l~ 262 (377)
.+...++..+. +.++ .+....+++.++ +.++++++||......+ ..++++++|+++||++|++.|+
T Consensus 65 ~l~~~~~~~i~~G~l~~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~ 144 (253)
T PRK12413 65 SLKDVPFSAIKIGLLPNVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLS 144 (253)
T ss_pred HhhCCCCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHh
Confidence 33444554443 5554 344556666666 46889999997543221 2356889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCe-----EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCC
Q 017101 263 GMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGS-----ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG 337 (377)
Q Consensus 263 g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~-----~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g 337 (377)
|.+..+.+++.++++.+.+.|++.|+||.|++|. .++..++. .+.+.. +...+|++||||+|.|+|+++|.+|
T Consensus 145 g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~GaGDaf~a~~~~~l~~g 222 (253)
T PRK12413 145 GKEIKTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGKE-FVILES-PVLEKNNIGAGCTFASSIASQLVKG 222 (253)
T ss_pred CcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCCE-EEEEee-cccCCCCCChHHHHHHHHHHHHHcC
Confidence 9877777788888999999999999999998642 23444443 444444 3567899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 017101 338 KSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 338 ~~l~~al~~a~~aAa~~~~~ 357 (377)
+++++|+++|.++...++++
T Consensus 223 ~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 223 KSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877765
No 54
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.78 E-value=1.3e-17 Score=162.33 Aligned_cols=145 Identities=24% Similarity=0.352 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcCCCCCC---C---------ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHH
Q 017101 211 PDSVNIQVAKAARSAGVPVIFDAGGMDA---P---------IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVK 278 (377)
Q Consensus 211 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~---~---------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~ 278 (377)
+.+.+..+++.++++++++++||..... . ....+++++|+++||+.|++.|+|.+..+.++..++++.
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~~ 161 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAKY 161 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4577888999999999999999963311 1 124577899999999999999999876677788888888
Q ss_pred HHh-cCCCEEEEeeCC----CCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017101 279 CHK-MGVQQVLVKLGA----KGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASL 353 (377)
Q Consensus 279 l~~-~g~~~vvvT~G~----~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~ 353 (377)
+.+ +|++.|+||.|. +|+.++..++..++++.+ ..+++|++||||+|.|+|++++++|+++++|+++|+.+...
T Consensus 162 L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~-~v~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~~A~~~~~~ 240 (448)
T PRK08573 162 IVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAP-RVESGCTHGTGCSFSAAIAAGLAKGLDPEEAIKTAKKFITM 240 (448)
T ss_pred HHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEec-CcCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 874 799999999985 354344444455566665 57889999999999999999999999999999999999988
Q ss_pred Hhc
Q 017101 354 CVQ 356 (377)
Q Consensus 354 ~~~ 356 (377)
+++
T Consensus 241 al~ 243 (448)
T PRK08573 241 AIK 243 (448)
T ss_pred HHH
Confidence 888
No 55
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.77 E-value=7.2e-18 Score=152.87 Aligned_cols=154 Identities=23% Similarity=0.216 Sum_probs=116.9
Q ss_pred hcCEEEEccCCCH----HHHHHHHHHHHhC--CCcEEEcCCCCC----C-------CChhhhhc-cCceeccCHHHHhhc
Q 017101 200 KAGIVLLQREIPD----SVNIQVAKAARSA--GVPVIFDAGGMD----A-------PIPQELLN-FIDILSPNESELGRL 261 (377)
Q Consensus 200 ~~~~~~~~~~~~~----~~~~~~~~~a~~~--g~~v~~D~~~~~----~-------~~~~~ll~-~~dvl~~N~~E~~~l 261 (377)
..+++ ..|.++. +.+.++++.++++ +++|++||.-.. + ....+++. ++|+++||..|++.+
T Consensus 72 ~~~~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l 150 (254)
T cd01173 72 EYDAV-LTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELL 150 (254)
T ss_pred cCCEE-EEecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHH
Confidence 45665 4454432 3556777777776 899999995211 0 11234455 999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCC------CeEEEEeCCeeEEeccCCCCc-ccCccCchHHHHHHHHHHH
Q 017101 262 TGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAK------GSALFVEGEKPIKQSIIPAAR-VIDTTGAGDTFTASFAVGF 334 (377)
Q Consensus 262 ~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~------G~~~~~~~~~~~~~~~~~~~~-vvdttGAGDaF~ag~l~~l 334 (377)
+|.+..+.++..++++.+.+.|++.|++|.|.. |++++..++ .++.+.+ ..+ ++|++||||+|.|||+++|
T Consensus 151 ~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~-~~~~~~~-~~~~~~~~~GaGD~f~a~~~~~l 228 (254)
T cd01173 151 TGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATE-AWLVQRP-KIPFPAYFNGTGDLFAALLLARL 228 (254)
T ss_pred cCCCcCCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCc-cEEEEee-ccCCCCCcCChHHHHHHHHHHHH
Confidence 998777777888999999999999999999985 676555443 2333322 334 6999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHhc
Q 017101 335 VEGKSREECLRFAAAAASLCVQ 356 (377)
Q Consensus 335 ~~g~~l~~al~~a~~aAa~~~~ 356 (377)
.+|+++++|+++|++....++.
T Consensus 229 ~~g~~~~~a~~~A~~~~~~~i~ 250 (254)
T cd01173 229 LKGKSLAEALEKALNFVHEVLE 250 (254)
T ss_pred HcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877664
No 56
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.76 E-value=1.6e-17 Score=153.19 Aligned_cols=155 Identities=25% Similarity=0.291 Sum_probs=115.2
Q ss_pred hhcCEEEEccCCCH----HHHHHHHHHHHhCC--CcEEEcCCCCC--------CCC----hhhhhccCceeccCHHHHhh
Q 017101 199 KKAGIVLLQREIPD----SVNIQVAKAARSAG--VPVIFDAGGMD--------API----PQELLNFIDILSPNESELGR 260 (377)
Q Consensus 199 ~~~~~~~~~~~~~~----~~~~~~~~~a~~~g--~~v~~D~~~~~--------~~~----~~~ll~~~dvl~~N~~E~~~ 260 (377)
...+++ +.|.++. +.+.++++.+++.+ +.+++||.-.+ ... .+.+++++|+++||..|++.
T Consensus 73 ~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~~ 151 (286)
T TIGR00687 73 NQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELEL 151 (286)
T ss_pred ccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHHH
Confidence 467775 5565653 35566777777665 67889994110 111 13467889999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCEEEEe-eCCCCeE-------EEEeCCeeEEeccCCCCc-ccCccCchHHHHHHHH
Q 017101 261 LTGMPTDSYEQISEAVVKCHKMGVQQVLVK-LGAKGSA-------LFVEGEKPIKQSIIPAAR-VIDTTGAGDTFTASFA 331 (377)
Q Consensus 261 l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT-~G~~G~~-------~~~~~~~~~~~~~~~~~~-vvdttGAGDaF~ag~l 331 (377)
++|.+..+.++..++++.+++.|++.|++| .|.+|+. ++..+++.++.+.+ ..+ ++|++||||+|+|||+
T Consensus 152 L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~GaGD~f~A~~l 230 (286)
T TIGR00687 152 LTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRP-LAVFMRQPVGTGDLIAALLL 230 (286)
T ss_pred HhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEecc-CcCCCCCCCChHHHHHHHHH
Confidence 999876677788888898999999999999 7888751 22233334555543 445 6899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHh
Q 017101 332 VGFVEGKSREECLRFAAAAASLCV 355 (377)
Q Consensus 332 ~~l~~g~~l~~al~~a~~aAa~~~ 355 (377)
+++++|+++++|+++|+++...++
T Consensus 231 ~~l~~g~~~~~al~~A~~~v~~~l 254 (286)
T TIGR00687 231 ATLLHGNSLKEALEKTVSAVYHVL 254 (286)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999944333
No 57
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.76 E-value=2.4e-17 Score=150.44 Aligned_cols=156 Identities=25% Similarity=0.350 Sum_probs=119.9
Q ss_pred hcCEEEEccCCCHHHHHHHHHHHHhCCC-cEEEcCCCCCC------------CChhhhhccCceeccCHHHHhhccCCCC
Q 017101 200 KAGIVLLQREIPDSVNIQVAKAARSAGV-PVIFDAGGMDA------------PIPQELLNFIDILSPNESELGRLTGMPT 266 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~------------~~~~~ll~~~dvl~~N~~E~~~l~g~~~ 266 (377)
..+.+.+.--...+....+.+.+++.+. ++++||...+. ...+.+++++|+++||..|++.|+|.+.
T Consensus 73 ~~~ai~iG~l~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 152 (266)
T PRK06427 73 RIDAVKIGMLASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPI 152 (266)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCC
Confidence 3456665433345667778888888775 79999963211 1123578899999999999999999765
Q ss_pred CCHHH-HHHHHHHHHhcCCCEEEEeeCC--CCe----EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCC
Q 017101 267 DSYEQ-ISEAVVKCHKMGVQQVLVKLGA--KGS----ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKS 339 (377)
Q Consensus 267 ~~~~~-~~~~~~~l~~~g~~~vvvT~G~--~G~----~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~ 339 (377)
.+.++ +.++++.+.+.|++.|+||.|. +|. +++. +++.++++.+ ..+.+|++|+||+|.|+|++++++|++
T Consensus 153 ~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~-~~~~~~~~~~-~~~~~~~~GaGD~f~a~l~~~l~~g~~ 230 (266)
T PRK06427 153 ADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFD-GEGEERFSAP-RIPTKNTHGTGCTLSAAIAAELAKGAS 230 (266)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEe-CCcEEEEEee-eECCCCCCChHHHHHHHHHHHHHCCCC
Confidence 44444 7788889999999999999998 553 3444 3334556654 567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 017101 340 REECLRFAAAAASLCVQV 357 (377)
Q Consensus 340 l~~al~~a~~aAa~~~~~ 357 (377)
+++|+++|++++..++.+
T Consensus 231 l~~A~~~A~~~~~~~i~~ 248 (266)
T PRK06427 231 LLDAVQTAKDYVTRAIRH 248 (266)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988875
No 58
>PRK05756 pyridoxamine kinase; Validated
Probab=99.76 E-value=2.1e-17 Score=152.38 Aligned_cols=156 Identities=23% Similarity=0.225 Sum_probs=119.2
Q ss_pred hhcCEEEEccCCCH----HHHHHHHHHHHhCC--CcEEEcCCCCCC------------CChhhhhccCceeccCHHHHhh
Q 017101 199 KKAGIVLLQREIPD----SVNIQVAKAARSAG--VPVIFDAGGMDA------------PIPQELLNFIDILSPNESELGR 260 (377)
Q Consensus 199 ~~~~~~~~~~~~~~----~~~~~~~~~a~~~g--~~v~~D~~~~~~------------~~~~~ll~~~dvl~~N~~E~~~ 260 (377)
...+++ +.|.++. +.+.++++.+++.+ +.+++||.-.+. ...+.+++++|+++||+.|++.
T Consensus 73 ~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~ 151 (286)
T PRK05756 73 GECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEW 151 (286)
T ss_pred ccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHH
Confidence 356755 5565543 34556666666655 458899863321 1123478899999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCC--------CeEEEEeCCeeEEeccCCCCcc-cCccCchHHHHHHHH
Q 017101 261 LTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAK--------GSALFVEGEKPIKQSIIPAARV-IDTTGAGDTFTASFA 331 (377)
Q Consensus 261 l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~--------G~~~~~~~~~~~~~~~~~~~~v-vdttGAGDaF~ag~l 331 (377)
|+|.+..+.+++.++++.+.+.|++.|+||.|.. |++++..++ .++.+.+ ..++ +|++||||+|+|+|+
T Consensus 152 L~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~-~~~~~~~-~~~~~v~~~GaGD~f~a~~~ 229 (286)
T PRK05756 152 LSGRPVETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADG-AWHISRP-LVDFMRQPVGVGDLTSALFL 229 (286)
T ss_pred HhCCCcCCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCc-eEEEecC-ccCCCCCCCChHHHHHHHHH
Confidence 9998766777888889999999999999999876 355554443 4555543 4566 799999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHhcc
Q 017101 332 VGFVEGKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 332 ~~l~~g~~l~~al~~a~~aAa~~~~~ 357 (377)
++|++|+++++|+++|++....++..
T Consensus 230 a~l~~g~~~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 230 ARLLQGGSLEEALEHTTAAVYEVMAR 255 (286)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 59
>PRK07105 pyridoxamine kinase; Validated
Probab=99.76 E-value=1.9e-17 Score=152.40 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=116.4
Q ss_pred hcCEEEEccCCCHHHHHHH---HHHHHhCCCcEEEcCCCCCC----C--------ChhhhhccCceeccCHHHHhhccCC
Q 017101 200 KAGIVLLQREIPDSVNIQV---AKAARSAGVPVIFDAGGMDA----P--------IPQELLNFIDILSPNESELGRLTGM 264 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~---~~~a~~~g~~v~~D~~~~~~----~--------~~~~ll~~~dvl~~N~~E~~~l~g~ 264 (377)
..+.+.+.--...+....+ ++.+++.++++++||..... . ...++++++|+++||+.|++.|+|.
T Consensus 75 ~~~aik~G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 154 (284)
T PRK07105 75 KFDAIYSGYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDK 154 (284)
T ss_pred ccCEEEECcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCC
Confidence 4566665332234444344 44445568899999973221 1 1246889999999999999999997
Q ss_pred CCC----CHHHHHHHHHHHHhcCCCEEEEee-----CCCCeEEEEeCC-eeEEeccCCCCcccCccCchHHHHHHHHHHH
Q 017101 265 PTD----SYEQISEAVVKCHKMGVQQVLVKL-----GAKGSALFVEGE-KPIKQSIIPAARVIDTTGAGDTFTASFAVGF 334 (377)
Q Consensus 265 ~~~----~~~~~~~~~~~l~~~g~~~vvvT~-----G~~G~~~~~~~~-~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l 334 (377)
+.. +.+++.++++.+.+.|++.|+||. |..|++++..++ ..++.+.+ ... +|++||||+|.|+|+++|
T Consensus 155 ~~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~-~~~-~~~~GaGD~f~aa~~~~l 232 (284)
T PRK07105 155 PYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCK-YIP-AHYPGTGDIFTSVITGSL 232 (284)
T ss_pred CcCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeec-ccC-CCcCChhHHHHHHHHHHH
Confidence 533 466788888889889999999999 667887665442 33444432 333 899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHhccc
Q 017101 335 VEGKSREECLRFAAAAASLCVQVK 358 (377)
Q Consensus 335 ~~g~~l~~al~~a~~aAa~~~~~~ 358 (377)
++|+++++|+++|.+++...+.+-
T Consensus 233 ~~g~~l~~av~~A~~~~~~~i~~~ 256 (284)
T PRK07105 233 LQGDSLPIALDRAVQFIEKGIRAT 256 (284)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888753
No 60
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.73 E-value=1.7e-16 Score=144.82 Aligned_cols=156 Identities=22% Similarity=0.270 Sum_probs=120.0
Q ss_pred cCEEEEccCCCHHHHHHHHHHHHhCCC-cEEEcCCCCCC------------CChhhhhccCceeccCHHHHhhccCC-CC
Q 017101 201 AGIVLLQREIPDSVNIQVAKAARSAGV-PVIFDAGGMDA------------PIPQELLNFIDILSPNESELGRLTGM-PT 266 (377)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~------------~~~~~ll~~~dvl~~N~~E~~~l~g~-~~ 266 (377)
.+.+.+.--...+....+.+.+++.+. ++++||..... .+.+.+++.+|+++||..|++.|+|. ..
T Consensus 75 ~~aikiG~l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~ 154 (270)
T PRK12616 75 VDAMKTGMLPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEI 154 (270)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCC
Confidence 355555333345667778888888764 69999974221 11234778999999999999999986 45
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeeCCCCe-----EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHH
Q 017101 267 DSYEQISEAVVKCHKMGVQQVLVKLGAKGS-----ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSRE 341 (377)
Q Consensus 267 ~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~-----~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~ 341 (377)
.+.+++.++++.+.+.|++.|+||.|..|. .++..++..++++.+ ..+.+|++||||+|.|+|+++|++|++++
T Consensus 155 ~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~GaGD~fsaalaa~l~~g~~l~ 233 (270)
T PRK12616 155 KTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESE-MIDTPYTHGAGCTFSAAVTAELAKGSEVK 233 (270)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEee-eeCCCCCCcHHHHHHHHHHHHHHCCCCHH
Confidence 567788899999999999999999998762 233444444555544 56778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 017101 342 ECLRFAAAAASLCVQV 357 (377)
Q Consensus 342 ~al~~a~~aAa~~~~~ 357 (377)
+|+++|.......+..
T Consensus 234 ~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 234 EAIYAAKEFITAAIKE 249 (270)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887765
No 61
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.73 E-value=6.5e-17 Score=148.73 Aligned_cols=240 Identities=22% Similarity=0.299 Sum_probs=166.6
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
+-+++|...+|....+|+-.+.+............||.+.|.|.++++||+++.|++++|+|..|++.+..-
T Consensus 342 KPv~vGa~i~D~~~k~d~d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~~~~-------- 413 (614)
T KOG3009|consen 342 KPVSVGATIVDFEAKTDEDVKDDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFRQNS-------- 413 (614)
T ss_pred CceeecceEEEeEEeecccccccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhhhhh--------
Confidence 349999999999999887545444444445567899999999999999999999999999994332221100
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCc
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 228 (377)
..+.+...+.+ .++++++++++...+...+++ ++.+..+
T Consensus 414 ---------------------------------------~~~~e~~~dl~-~a~~I~~DsNiS~~~Ma~il~-ak~~k~~ 452 (614)
T KOG3009|consen 414 ---------------------------------------HKIVESNEDLL-SADFILLDSNISVPVMARILE-AKKHKKQ 452 (614)
T ss_pred ---------------------------------------hhhhhhhhhhh-cCCEEEEcCCCCHHHHHHHHH-hhhccCc
Confidence 00111121333 789999999999888888888 9999999
Q ss_pred EEEcCCCCCCC--Chh-hhhccCceeccCHHHHhhccC-CC-------CCCHHHHHHHHHHHH---hcCCCEEEEeeCCC
Q 017101 229 VIFDAGGMDAP--IPQ-ELLNFIDILSPNESELGRLTG-MP-------TDSYEQISEAVVKCH---KMGVQQVLVKLGAK 294 (377)
Q Consensus 229 v~~D~~~~~~~--~~~-~ll~~~dvl~~N~~E~~~l~g-~~-------~~~~~~~~~~~~~l~---~~g~~~vvvT~G~~ 294 (377)
|+|.|...++. ..+ -+...++.++||..|+-.... .. ....+.+.+.++.+. ......+|+|+..+
T Consensus 453 V~fEPTd~~k~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~ 532 (614)
T KOG3009|consen 453 VWFEPTDIDKVKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVTLANK 532 (614)
T ss_pred eEecCCCchhhhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHHHHHHHHHhhcccceEEEEeccC
Confidence 99999765322 111 112347899999999843221 11 111233444443333 23667899999999
Q ss_pred CeEEEEeCC--ee--EEe-ccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 017101 295 GSALFVEGE--KP--IKQ-SIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 295 G~~~~~~~~--~~--~~~-~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~ 357 (377)
|+.+.+.+. .. ... |+.-..++++..||||+|.+||+.+++++.++.+++.-+..++-.-.+.
T Consensus 533 G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~~~v~es~~gg~~~~ralls~ 600 (614)
T KOG3009|consen 533 GSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHNKTVVESLQGGQECARALLST 600 (614)
T ss_pred ceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhcCcchHhhccccHHHHHHHHhc
Confidence 998766542 11 112 2222347899999999999999999999999999999996666555443
No 62
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.72 E-value=2e-16 Score=145.19 Aligned_cols=155 Identities=20% Similarity=0.160 Sum_probs=114.1
Q ss_pred hcCEEEEccCCCHHHHHHHHHHHHh-----CCCcEEEcCCCCC--------CC----ChhhhhccCceeccCHHHHhhcc
Q 017101 200 KAGIVLLQREIPDSVNIQVAKAARS-----AGVPVIFDAGGMD--------AP----IPQELLNFIDILSPNESELGRLT 262 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~-----~g~~v~~D~~~~~--------~~----~~~~ll~~~dvl~~N~~E~~~l~ 262 (377)
..+.+.+.--...+....+.+..++ .+.++++||.-.+ .. ..+.+++++|+++||+.|++.|+
T Consensus 88 ~~d~i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~ 167 (281)
T PRK08176 88 QLRAVTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEILT 167 (281)
T ss_pred cCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHHh
Confidence 5677776332233333333333332 4778999996211 11 12358899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCC-------eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHh
Q 017101 263 GMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKG-------SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFV 335 (377)
Q Consensus 263 g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G-------~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~ 335 (377)
|.+..+.+++.++++.+.+.|++.|+||.|..| ++++..++ .+. ...+ ...+|++||||+|.|+|+++++
T Consensus 168 g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~GaGD~faa~~~a~l~ 244 (281)
T PRK08176 168 GKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADS-VNV-ISHP-RVDTDLKGTGDLFCAELVSGLL 244 (281)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCc-eEE-EecC-ccCCCCCChhHHHHHHHHHHHh
Confidence 977666778888899999999999999999988 44454443 333 3333 3457999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcc
Q 017101 336 EGKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 336 ~g~~l~~al~~a~~aAa~~~~~ 357 (377)
+|+++++|+++|+..-..++..
T Consensus 245 ~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 245 KGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888776653
No 63
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.60 E-value=2.3e-14 Score=129.92 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=118.3
Q ss_pred HHHhhcCEEEEccCCCH-HHHHHHHHHHHhCCCcEEEcCCCCCCCChh---hhhccCceeccCHHHHhhccCCCCCC-HH
Q 017101 196 EVVKKAGIVLLQREIPD-SVNIQVAKAARSAGVPVIFDAGGMDAPIPQ---ELLNFIDILSPNESELGRLTGMPTDS-YE 270 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~-~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~---~ll~~~dvl~~N~~E~~~l~g~~~~~-~~ 270 (377)
..+...+++++...++. +....+++.+++++.++++|+.+....... .+.+..++++||..|++.|++....+ .+
T Consensus 73 ~~~~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~~~~~~~~~iltPn~~E~~~L~g~~~~~~~~ 152 (254)
T cd01171 73 ELLERADAVVIGPGLGRDEEAAEILEKALAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGEFARLLGALVEEIQA 152 (254)
T ss_pred hhhccCCEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChhhhccCCCEEECCCHHHHHHHhCCChhhhhh
Confidence 45677899999876665 677888888998999999998753210000 13567899999999999999976433 23
Q ss_pred HHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017101 271 QISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAA 350 (377)
Q Consensus 271 ~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~a 350 (377)
+..++++.+.+.+. .++++.|. +.+++..++. ++++.. ..+.++++|+||+|.|.+.+.+.+|+++.+|+++|+.+
T Consensus 153 ~~~~~a~~l~~~~~-~~vvlkG~-~~~i~~~~~~-~~~~~~-~~~~~~~~GaGD~lag~iaa~la~g~~~~eA~~~A~~~ 228 (254)
T cd01171 153 DRLAAAREAAAKLG-ATVVLKGA-VTVIADPDGR-VYVNPT-GNPGLATGGSGDVLAGIIAALLAQGLSPLEAAALAVYL 228 (254)
T ss_pred HHHHHHHHHHHHcC-cEEEEcCC-CCEEECCCCc-EEEECC-CCcccccCchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55677888888764 55666675 4545544443 445544 56789999999999888888888999999999999999
Q ss_pred HHHHhccc
Q 017101 351 ASLCVQVK 358 (377)
Q Consensus 351 Aa~~~~~~ 358 (377)
.+.+.+..
T Consensus 229 ~~~a~~~~ 236 (254)
T cd01171 229 HGLAGDLA 236 (254)
T ss_pred HHHHHHHH
Confidence 99888753
No 64
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.60 E-value=4.9e-14 Score=139.66 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=118.8
Q ss_pred cCEEEEccCCCHHHHHHHHHHHHhCCCc-EEEcCCCCCCC------------ChhhhhccCceeccCHHHHhhccCCC-C
Q 017101 201 AGIVLLQREIPDSVNIQVAKAARSAGVP-VIFDAGGMDAP------------IPQELLNFIDILSPNESELGRLTGMP-T 266 (377)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~~------------~~~~ll~~~dvl~~N~~E~~~l~g~~-~ 266 (377)
.+.+.+..-...+.+..+++.+++.+.+ +++||.-.... +.+.+++++|+++||..|++.|+|.. .
T Consensus 79 ~~aik~G~l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~~~~ 158 (502)
T PLN02898 79 VDVVKTGMLPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGGDPL 158 (502)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhCCCCC
Confidence 3445543333466777888888888775 99999521111 11357888999999999999999743 3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeeCCCC-----eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHH
Q 017101 267 DSYEQISEAVVKCHKMGVQQVLVKLGAKG-----SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSRE 341 (377)
Q Consensus 267 ~~~~~~~~~~~~l~~~g~~~vvvT~G~~G-----~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~ 341 (377)
.+.+++.++++.+.+.|++.|+||.|..+ ..++..++..++.+.+ ..+.+|++|+||+|.|+|++++++|++++
T Consensus 159 ~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~-~i~~~~t~GaGD~fsaaiaa~l~~G~~l~ 237 (502)
T PLN02898 159 ETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSS-RIKTRNTHGTGCTLASCIAAELAKGSDML 237 (502)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecc-eeCCCCCCchhhhHHHHHHHHHHcCCCHH
Confidence 45667888899999999999999999753 2233334445556554 56778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 017101 342 ECLRFAAAAASLCVQV 357 (377)
Q Consensus 342 ~al~~a~~aAa~~~~~ 357 (377)
+|+++|..+...++..
T Consensus 238 eAv~~A~~~v~~ai~~ 253 (502)
T PLN02898 238 SAVKVAKRYVETALEY 253 (502)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988875
No 65
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.58 E-value=5.2e-14 Score=139.53 Aligned_cols=159 Identities=17% Similarity=0.217 Sum_probs=117.0
Q ss_pred HHHhhcCEEEE-ccCCC-HHHHHHHHHHHHhCCCcEEEcCCCCC---CCC---------h----hhhhccCceeccCHHH
Q 017101 196 EVVKKAGIVLL-QREIP-DSVNIQVAKAARSAGVPVIFDAGGMD---API---------P----QELLNFIDILSPNESE 257 (377)
Q Consensus 196 ~~l~~~~~~~~-~~~~~-~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~---------~----~~ll~~~dvl~~N~~E 257 (377)
..+.+.++..+ .|.++ .+.+..+.+.++ +.++++||.... ... . +.+++.+|+++||..|
T Consensus 293 ~l~~d~~~~~Ik~G~l~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~E 370 (504)
T PTZ00347 293 SVMSDFNISVVKLGLVPTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPE 370 (504)
T ss_pred HHHhCCCCCEEEECCcCCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHH
Confidence 44455544433 45443 456666666664 678999985321 001 1 2467889999999999
Q ss_pred HhhccCCC-CCCHHHHHHHHHHHHhcCCCEEEEeeCCCC-------eEEEEeC-CeeEEeccCCCCcccCccCchHHHHH
Q 017101 258 LGRLTGMP-TDSYEQISEAVVKCHKMGVQQVLVKLGAKG-------SALFVEG-EKPIKQSIIPAARVIDTTGAGDTFTA 328 (377)
Q Consensus 258 ~~~l~g~~-~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G-------~~~~~~~-~~~~~~~~~~~~~vvdttGAGDaF~a 328 (377)
++.|+|.+ ..+.++..++++.+.+.|++.|+||.|..| .+++..+ +..++++.+ ..+++|++|+||+|.|
T Consensus 371 a~~L~g~~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~~~~~~GaGD~fsa 449 (504)
T PTZ00347 371 AERILGRKEITGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTAN-RIATINTHGTGCTLAS 449 (504)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEee-eECCCCCCChHHHHHH
Confidence 99999974 455667888889999999999999999963 3344332 344556654 5678999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 017101 329 SFAVGFVEGKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 329 g~l~~l~~g~~l~~al~~a~~aAa~~~~~ 357 (377)
+|++++++|+++++|+++|.+.-...+..
T Consensus 450 aiaa~la~G~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 450 AISSFLARGYTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998877766654
No 66
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.54 E-value=2.2e-13 Score=126.09 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=106.9
Q ss_pred EEEEccCCCH-HHHHHHHHHH---HhCC--CcEEEcCCCCC------C----CChhhhhccCceeccCHHHHhhccCCCC
Q 017101 203 IVLLQREIPD-SVNIQVAKAA---RSAG--VPVIFDAGGMD------A----PIPQELLNFIDILSPNESELGRLTGMPT 266 (377)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~a---~~~g--~~v~~D~~~~~------~----~~~~~ll~~~dvl~~N~~E~~~l~g~~~ 266 (377)
.+++.|.++. +.+..+.+.+ ++.+ +++++||.-.+ . .....+++++|+++||+.|++.++|.+.
T Consensus 79 ~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~dii~pN~~E~~~L~g~~~ 158 (296)
T PTZ00344 79 TYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADVITPNQFEASLLSGVEV 158 (296)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCEEeCCHHHHHHHhCCCC
Confidence 4556666654 4444444444 4454 47999975311 0 1134577899999999999999999876
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEe---eCCCC----eEEEE--eC---CeeEEeccCCCCcccCccCchHHHHHHHHHHH
Q 017101 267 DSYEQISEAVVKCHKMGVQQVLVK---LGAKG----SALFV--EG---EKPIKQSIIPAARVIDTTGAGDTFTASFAVGF 334 (377)
Q Consensus 267 ~~~~~~~~~~~~l~~~g~~~vvvT---~G~~G----~~~~~--~~---~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l 334 (377)
.+.++..++++.+.+.|++.|+|| .|.+| +++.. .+ ++.+.... |..+ ++++|+||+|.|+|++.+
T Consensus 159 ~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~GaGD~f~A~~~a~l 236 (296)
T PTZ00344 159 KDLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKV-PYIE-GRYTGTGDLFAALLLAFS 236 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEec-cccC-CCCCCchHHHHHHHHHHH
Confidence 666778888888888899999999 56566 33332 11 22333333 2344 577999999999999888
Q ss_pred hCCCCHHHHHHHHHHHHHHHhcc
Q 017101 335 VEGKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 335 ~~g~~l~~al~~a~~aAa~~~~~ 357 (377)
.+| ++++|+++|.+.-..++..
T Consensus 237 ~~g-~~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 237 HQH-PMDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred hcC-CHHHHHHHHHHHHHHHHHH
Confidence 888 9999999999888766654
No 67
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.53 E-value=4.2e-13 Score=122.73 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=124.4
Q ss_pred HHHhhcCEEEEccCCCH-HHHHHHHHHHHhCCCcEEEcCCCCCCCChhhh---hccCceeccCHHHHhhccCCCCCCHHH
Q 017101 196 EVVKKAGIVLLQREIPD-SVNIQVAKAARSAGVPVIFDAGGMDAPIPQEL---LNFIDILSPNESELGRLTGMPTDSYEQ 271 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~-~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~l---l~~~dvl~~N~~E~~~l~g~~~~~~~~ 271 (377)
+.+..++++++.+.++. ..+.++++.+++.+.++++|+.+.. ..... ...+++++||..|++.|+|....+.++
T Consensus 88 ~~~~~~davvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa~g~~--l~~~~~~~~~~~~vItPN~~El~~L~g~~~~~~~~ 165 (272)
T TIGR00196 88 ELLERYDVVVIGPGLGQDPSFKKAVEEVLELDKPVVLDADALN--LLTYDKPKREGEVILTPHPGEFKRLLGLVNEIQGD 165 (272)
T ss_pred hhhccCCEEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEhHHHH--HHhhcccccCCCEEECCCHHHHHHHhCCchhhhhh
Confidence 44578899999875544 3466788888889999999997431 11111 346899999999999999976555667
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHH---H
Q 017101 272 ISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFA---A 348 (377)
Q Consensus 272 ~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a---~ 348 (377)
..++++.+.+. ...+|++.|..+.+ +..++..+..+ . .....+++|+||++.|.+.+.+.+|.++.+|+..| +
T Consensus 166 ~~~aa~~l~~~-~~~vVv~kG~~~~i-~~~~~~~~~~~-~-~~~~~~~~GaGD~lag~iaa~la~g~~~~~A~~~a~~~~ 241 (272)
T TIGR00196 166 RLEAAQDIAQK-LQAVVVLKGAADVI-AAPDGDLWINK-T-GNAALAKGGTGDVLAGLIGGLLAQNLDPFDAACNAAFAH 241 (272)
T ss_pred HHHHHHHHHHH-hCCEEEEcCCCCEE-EcCCCeEEEEC-C-CCCccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888875 44688889999984 33434444443 2 35678899999995555555566999999999777 7
Q ss_pred HHHHHHhcc-cCCCCCCCCHHHHHHHHhh
Q 017101 349 AAASLCVQV-KGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 349 ~aAa~~~~~-~G~~~~~p~~e~i~~~l~~ 376 (377)
..|+..+.+ .|+.. .+.+|+.+.+.+
T Consensus 242 ~~a~~~~~~~~g~~~--~~~~dl~~~i~~ 268 (272)
T TIGR00196 242 GLAGDLALKNHGAYG--LTALDLIEKIPR 268 (272)
T ss_pred HHHHHHHHHhcCCCC--cCHHHHHHHHHH
Confidence 777776644 46432 577888877654
No 68
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.50 E-value=2.2e-12 Score=115.50 Aligned_cols=162 Identities=23% Similarity=0.233 Sum_probs=116.6
Q ss_pred cCchhHHHHhhcCEEEEccCCCH----HHHHHHHHHHHhCCCcEEEcCCCCCCC-----Chhhhhcc--CceeccCHHHH
Q 017101 190 FGDEDLEVVKKAGIVLLQREIPD----SVNIQVAKAARSAGVPVIFDAGGMDAP-----IPQELLNF--IDILSPNESEL 258 (377)
Q Consensus 190 l~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~ll~~--~dvl~~N~~E~ 258 (377)
..+...+.+..+|++++...+.. +.+..+++.+++.++++++|+...... ...+++.. +|+++||..|+
T Consensus 39 ~~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea 118 (242)
T cd01170 39 APEEVEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEI 118 (242)
T ss_pred CHHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHH
Confidence 34455577889999988753322 334455666888899999999743211 11234554 99999999999
Q ss_pred hhccCCCCCC---------HHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHH
Q 017101 259 GRLTGMPTDS---------YEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTAS 329 (377)
Q Consensus 259 ~~l~g~~~~~---------~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag 329 (377)
..|+|.+... .+++.++++.+.+.+...|++| |.... ++ ++++.++.+.. ...+.++.|+||+|.|+
T Consensus 119 ~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~-~~~~~~~~~~~-~~~~~~v~GtGdtLa~a 194 (242)
T cd01170 119 AALAGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-IT-DGERVVVVKNG-HPLLTKITGTGCLLGAV 194 (242)
T ss_pred HHHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EE-ECCEEEEEeCC-CccccCCCchHHHHHHH
Confidence 9999875421 4677888888887766678888 66664 33 44556666653 33445679999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHh
Q 017101 330 FAVGFVEGKSREECLRFAAAAASLCV 355 (377)
Q Consensus 330 ~l~~l~~g~~l~~al~~a~~aAa~~~ 355 (377)
+...+.+|.++.+|+..|...-+.+.
T Consensus 195 iAa~LA~g~~~~~A~~~A~~~~~~a~ 220 (242)
T cd01170 195 IAAFLAVGDDPLEAAVSAVLVYGIAG 220 (242)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999976655554
No 69
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.46 E-value=1.5e-12 Score=117.22 Aligned_cols=156 Identities=24% Similarity=0.265 Sum_probs=111.2
Q ss_pred hcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCC----C--------CChhhhhccCceeccCHHHHhhccCCCCC
Q 017101 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD----A--------PIPQELLNFIDILSPNESELGRLTGMPTD 267 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~--------~~~~~ll~~~dvl~~N~~E~~~l~g~~~~ 267 (377)
..+.+.+.--...+.+..+.+..++.+.++++||--.+ . ...+.+++.+|+++||..|++.|+|.+..
T Consensus 60 ~~~aikiG~l~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~ 139 (246)
T PF08543_consen 60 KFDAIKIGYLGSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREIN 139 (246)
T ss_dssp C-SEEEE-S-SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--S
T ss_pred cccEEEEcccCCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCC
Confidence 45666654333456666777777778889999995210 0 11234889999999999999999998888
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeeCCC----Ce--EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHH
Q 017101 268 SYEQISEAVVKCHKMGVQQVLVKLGAK----GS--ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSRE 341 (377)
Q Consensus 268 ~~~~~~~~~~~l~~~g~~~vvvT~G~~----G~--~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~ 341 (377)
+.+++.++++.++++|++.|+||-+.. +. .++..+++.+....+ ..+..+..|.||.|.|++++.|++|++++
T Consensus 140 ~~~~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~GTGd~fss~laa~l~~g~~l~ 218 (246)
T PF08543_consen 140 SEEDIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSP-RIPTGSFHGTGDLFSSALAAFLAKGYSLE 218 (246)
T ss_dssp SHHHHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEE-EECTSGCTTHHHHHHHHHHHHHHTTSSHH
T ss_pred ChHhHHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeeccee-EEcCCCCCCchhHHHHHHHHHHHcCCCHH
Confidence 899999999999999999999998862 22 233455555544432 23336889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 017101 342 ECLRFAAAAASLCVQ 356 (377)
Q Consensus 342 ~al~~a~~aAa~~~~ 356 (377)
+|++.|...-...+.
T Consensus 219 ~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 219 EAVEKAKNFVRRAIK 233 (246)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888776665
No 70
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.46 E-value=2.9e-12 Score=127.60 Aligned_cols=152 Identities=21% Similarity=0.192 Sum_probs=107.9
Q ss_pred CEEEEccCC-CHHHHHHHHHHHHhCC-CcEEEcCCCCC---CC--------ChhhhhccCceeccCHHHHhhccCCCC-C
Q 017101 202 GIVLLQREI-PDSVNIQVAKAARSAG-VPVIFDAGGMD---AP--------IPQELLNFIDILSPNESELGRLTGMPT-D 267 (377)
Q Consensus 202 ~~~~~~~~~-~~~~~~~~~~~a~~~g-~~v~~D~~~~~---~~--------~~~~ll~~~dvl~~N~~E~~~l~g~~~-~ 267 (377)
+.+.+ |.+ ..+....+.+..++.. .+|++||.-.. .. ...++++++|+++||..|++.|+|.+. .
T Consensus 100 ~aiki-G~l~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~~~~ 178 (530)
T PRK14713 100 DAVKI-GMLGDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELAVLLGEPPAT 178 (530)
T ss_pred CEEEE-CCcCCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHHHHhCCCCCC
Confidence 45555 333 3444555555555443 35899996321 11 124588999999999999999999654 3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeeCCCC-----eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHH
Q 017101 268 SYEQISEAVVKCHKMGVQQVLVKLGAKG-----SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREE 342 (377)
Q Consensus 268 ~~~~~~~~~~~l~~~g~~~vvvT~G~~G-----~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~ 342 (377)
+.+++.++++.+.+.+...||||.|..+ ..++..+++.++++.. ..+.+|++|+||+|.|+|+++|++|+++++
T Consensus 179 ~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~-~v~~~~t~GaGD~fsaalaa~La~G~~l~e 257 (530)
T PRK14713 179 TWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGP-RVDTRNTHGTGCSLSSALATRLGRGGDWAA 257 (530)
T ss_pred CHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeee-eeCCCCCCcHHHHHHHHHHHHHHCCCCHHH
Confidence 5677778888888665568999988642 3344444445556554 567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 017101 343 CLRFAAAAASLCV 355 (377)
Q Consensus 343 al~~a~~aAa~~~ 355 (377)
|+++|...-...+
T Consensus 258 Av~~A~~~v~~~i 270 (530)
T PRK14713 258 ALRWATAWLHGAI 270 (530)
T ss_pred HHHHHHHHHHHHH
Confidence 9999987433333
No 71
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.46 E-value=2e-12 Score=133.57 Aligned_cols=154 Identities=19% Similarity=0.161 Sum_probs=114.5
Q ss_pred CEEEEccCCCHHHHHHHHHHHHhC-CCcEEEcCCCCCC-----------CChhhhhccCceeccCHHHHhhccCCC-CCC
Q 017101 202 GIVLLQREIPDSVNIQVAKAARSA-GVPVIFDAGGMDA-----------PIPQELLNFIDILSPNESELGRLTGMP-TDS 268 (377)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~-----------~~~~~ll~~~dvl~~N~~E~~~l~g~~-~~~ 268 (377)
+.+-+.--...+....+.+.+++. +.++++||.-... .....+++.+|+++||..|++.|+|.. ..+
T Consensus 312 ~aiKiGmL~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~~~~~ 391 (755)
T PRK09517 312 DAVKLGMLGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCGEAPAIT 391 (755)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhCCCCCCC
Confidence 444443222356677778888774 5679999853211 112458889999999999999999853 345
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeeCC------CCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHH
Q 017101 269 YEQISEAVVKCHKMGVQQVLVKLGA------KGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREE 342 (377)
Q Consensus 269 ~~~~~~~~~~l~~~g~~~vvvT~G~------~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~ 342 (377)
.+++.++++.+.+.+...|+||.|. .|++ +..++..++.+.+ .++.+|++|+||+|.|+|+++|++|+++++
T Consensus 392 ~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l-~~~~~~~~~~~~~-~v~~~~t~GaGDtfsaaiaa~La~G~sl~e 469 (755)
T PRK09517 392 MDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAV-VRPDGSVHQVENP-RVNTTNSHGTGCSLSAALATLIAAGESVEK 469 (755)
T ss_pred HHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEE-EeCCCeEEEEeec-ccCCCCCcChHHHHHHHHHHHHHCCCCHHH
Confidence 6678888888877544589999983 4554 4445445566654 577899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 017101 343 CLRFAAAAASLCVQV 357 (377)
Q Consensus 343 al~~a~~aAa~~~~~ 357 (377)
|+++|...-...+..
T Consensus 470 Av~~A~~~v~~~i~~ 484 (755)
T PRK09517 470 ALEWATRWLNEALRH 484 (755)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988877754
No 72
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.45 E-value=3.6e-12 Score=112.55 Aligned_cols=145 Identities=25% Similarity=0.356 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHhCC-CcEEEcCC-----CCC-------CCChhhhhccCceeccCHHHHhhccCC-CCCCHHHHHHHH
Q 017101 211 PDSVNIQVAKAARSAG-VPVIFDAG-----GMD-------APIPQELLNFIDILSPNESELGRLTGM-PTDSYEQISEAV 276 (377)
Q Consensus 211 ~~~~~~~~~~~a~~~g-~~v~~D~~-----~~~-------~~~~~~ll~~~dvl~~N~~E~~~l~g~-~~~~~~~~~~~~ 276 (377)
..+.+..+.+..++++ .++++||- +.. +.+.+.+++++++++||..|++.|+|. ...+.+++.+++
T Consensus 83 ~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~ 162 (263)
T COG0351 83 SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAA 162 (263)
T ss_pred CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHH
Confidence 4567778888888888 78999994 110 112357899999999999999999995 788889999998
Q ss_pred HHHHhcCCCEEEEeeCCCC---eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017101 277 VKCHKMGVQQVLVKLGAKG---SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASL 353 (377)
Q Consensus 277 ~~l~~~g~~~vvvT~G~~G---~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~ 353 (377)
+.+.+.|++.|+||-|... .-+++.++..+....+ ..+-.+|.|+|++|.|++.+.|.+|.++++|++.|-..-..
T Consensus 163 ~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~-ri~t~~tHGTGCTlSaAIaa~LA~G~~l~~AV~~Ak~fv~~ 241 (263)
T COG0351 163 KLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAP-RIPTKNTHGTGCTLSAAIAANLAKGLSLEEAVKKAKEFVTR 241 (263)
T ss_pred HHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEEecc-ccCCCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8899999999999987643 3334455444444443 56677899999999999999999999999999999988888
Q ss_pred Hhc
Q 017101 354 CVQ 356 (377)
Q Consensus 354 ~~~ 356 (377)
+++
T Consensus 242 AI~ 244 (263)
T COG0351 242 AIR 244 (263)
T ss_pred HHh
Confidence 877
No 73
>PLN02978 pyridoxal kinase
Probab=99.39 E-value=1.8e-11 Score=113.68 Aligned_cols=142 Identities=22% Similarity=0.245 Sum_probs=101.8
Q ss_pred HHHHHHHHHHh--CCCcEEEcCCCCCC--CC--------h-hhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHH
Q 017101 214 VNIQVAKAARS--AGVPVIFDAGGMDA--PI--------P-QELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280 (377)
Q Consensus 214 ~~~~~~~~a~~--~g~~v~~D~~~~~~--~~--------~-~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~ 280 (377)
.+.++++.+++ .++++++||...+. .+ . +.+++++|+++||+.|++.|+|.+..+.+++.++++.+.
T Consensus 103 ~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~a~~~l~ 182 (308)
T PLN02978 103 TVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTGIRIVTEEDAREACAILH 182 (308)
T ss_pred HHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 34556666665 45778999973321 01 1 358899999999999999999977666677888889999
Q ss_pred hcCCCEEEEeeCC-CCeEEEEe------C--CeeEEeccCCCCcccCccCchHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Q 017101 281 KMGVQQVLVKLGA-KGSALFVE------G--EKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG-KSREECLRFAAAA 350 (377)
Q Consensus 281 ~~g~~~vvvT~G~-~G~~~~~~------~--~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g-~~l~~al~~a~~a 350 (377)
+.|++.||||.+. +|...+.. + ++.++...+ ..+.. ++|+||+|.|.+++.+.+| .++++|++.|...
T Consensus 183 ~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~-~~GtGD~fsA~laa~l~~g~~~l~~A~~~A~~~ 260 (308)
T PLN02978 183 AAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIP-KIPAY-FTGTGDLMAALLLGWSHKYPDNLDKAAELAVSS 260 (308)
T ss_pred HhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEcc-CCCCC-CCCchHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 9999999998754 34332221 1 233444433 44444 5899999999888888887 7999999999887
Q ss_pred HHHHhcc
Q 017101 351 ASLCVQV 357 (377)
Q Consensus 351 Aa~~~~~ 357 (377)
-..+++.
T Consensus 261 v~~~i~~ 267 (308)
T PLN02978 261 LQAVLRR 267 (308)
T ss_pred HHHHHHH
Confidence 7766654
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.24 E-value=1.9e-10 Score=102.22 Aligned_cols=156 Identities=26% Similarity=0.295 Sum_probs=110.5
Q ss_pred HHhhcCEEEEccCCCH-H---HHHHHHHHHHhC--CCcEEEcCCC-----C--CC----CChhhhhccCceeccCHHHHh
Q 017101 197 VVKKAGIVLLQREIPD-S---VNIQVAKAARSA--GVPVIFDAGG-----M--DA----PIPQELLNFIDILSPNESELG 259 (377)
Q Consensus 197 ~l~~~~~~~~~~~~~~-~---~~~~~~~~a~~~--g~~v~~D~~~-----~--~~----~~~~~ll~~~dvl~~N~~E~~ 259 (377)
.+..+|.++. |.++. + .+..+++..|+. +..+++||-- . .. ....++++.+|++.||..|++
T Consensus 70 ~~~~~davlt-GYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe 148 (281)
T COG2240 70 KLGECDAVLT-GYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELE 148 (281)
T ss_pred cccccCEEEE-ccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHH
Confidence 3445666653 44432 2 344555555555 3448889841 1 01 122468999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCC-----CeEEEEeCC--eeEEeccCCCCcccCccCchHHHHHHHHH
Q 017101 260 RLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAK-----GSALFVEGE--KPIKQSIIPAARVIDTTGAGDTFTASFAV 332 (377)
Q Consensus 260 ~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~-----G~~~~~~~~--~~~~~~~~~~~~vvdttGAGDaF~ag~l~ 332 (377)
.|+|.+..+.++..++++.+.+.|++.|+||.=.. |.+++.... ...|.- |.++ .+.+|.||.|+|-|++
T Consensus 149 ~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~--~~v~-~~~~GtGDL~sallla 225 (281)
T COG2240 149 ILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS--PLVP-FIPNGTGDLFSALLLA 225 (281)
T ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh--hcCC-CCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999996433 333333221 112221 1122 3499999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhc
Q 017101 333 GFVEGKSREECLRFAAAAASLCVQ 356 (377)
Q Consensus 333 ~l~~g~~l~~al~~a~~aAa~~~~ 356 (377)
.+++|.++++|+..+..+-...++
T Consensus 226 ~lL~g~~~~~al~~~~~~V~evl~ 249 (281)
T COG2240 226 RLLEGLSLTQALERATAAVYEVLQ 249 (281)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887766
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.11 E-value=8.9e-09 Score=93.49 Aligned_cols=160 Identities=23% Similarity=0.229 Sum_probs=108.6
Q ss_pred chhHHHHhhcCEEEEccCCC-HHH---HHHHHHHHHhCCCcEEEcCCCCCCC-C----hhhhhc--cCceeccCHHHHhh
Q 017101 192 DEDLEVVKKAGIVLLQREIP-DSV---NIQVAKAARSAGVPVIFDAGGMDAP-I----PQELLN--FIDILSPNESELGR 260 (377)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~-~~~---~~~~~~~a~~~g~~v~~D~~~~~~~-~----~~~ll~--~~dvl~~N~~E~~~ 260 (377)
++..+.+..++.+++..... .+. ...+++.++++++|+++||...... . ...+++ ++++++||..|+..
T Consensus 46 ~e~~~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~~ 125 (263)
T PRK09355 46 EEAEEMAKIAGALVINIGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAA 125 (263)
T ss_pred HHHHHHHHhcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHHH
Confidence 34446677888888864333 322 3344556788899999999754211 1 123444 68999999999999
Q ss_pred ccCCCCC--------CHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHH
Q 017101 261 LTGMPTD--------SYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAV 332 (377)
Q Consensus 261 l~g~~~~--------~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~ 332 (377)
|++.+.. +.++..++++.+.+.+...|++|-+.. ++++++..+.++.- .....+.+|+||++.|.+..
T Consensus 126 L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~d---~I~~~~~~~~~~~g-~~~~~~v~GtGc~L~~~iaa 201 (263)
T PRK09355 126 LAGEAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEVD---YITDGERVVSVHNG-HPLMTKVTGTGCLLSAVVAA 201 (263)
T ss_pred HhCCCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCCc---EEEeCCEEEEEeCC-CcccCCcccccHHHHHHHHH
Confidence 9986421 234677788888877656788884443 23345555555422 22345669999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHh
Q 017101 333 GFVEGKSREECLRFAAAAASLCV 355 (377)
Q Consensus 333 ~l~~g~~l~~al~~a~~aAa~~~ 355 (377)
.+..|.++.+|+..|...-+.+-
T Consensus 202 ~lA~g~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 202 FAAVEKDYLEAAAAACAVYGIAG 224 (263)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999988876655543
No 76
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.09 E-value=1e-08 Score=94.58 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=103.6
Q ss_pred CEEEEccCCCHHHHHHHHHHHHhCC----C--cEEEcCC-----CC--CC--CCh----hhhhccCceeccCHHHHhhcc
Q 017101 202 GIVLLQREIPDSVNIQVAKAARSAG----V--PVIFDAG-----GM--DA--PIP----QELLNFIDILSPNESELGRLT 262 (377)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~g----~--~v~~D~~-----~~--~~--~~~----~~ll~~~dvl~~N~~E~~~l~ 262 (377)
+.+=+.--...+.+..+.+..++++ . ++++||. +. .. ... +.+++++|+++||..|++.|+
T Consensus 75 ~aIKiGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~ 154 (321)
T PTZ00493 75 DVVKLGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVIL 154 (321)
T ss_pred CEEEECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHh
Confidence 4443332223455556666555542 2 4899995 11 11 111 458999999999999999998
Q ss_pred C-----CCCCCHHHHHHHHHHHHh-cCCCEEEEeeCCCC----------e--EEEEeC--------------C------e
Q 017101 263 G-----MPTDSYEQISEAVVKCHK-MGVQQVLVKLGAKG----------S--ALFVEG--------------E------K 304 (377)
Q Consensus 263 g-----~~~~~~~~~~~~~~~l~~-~g~~~vvvT~G~~G----------~--~~~~~~--------------~------~ 304 (377)
| .. .+.+++.++++.+.+ +|++.|+||-|... + +++..+ + +
T Consensus 155 g~~~~~~~-~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (321)
T PTZ00493 155 EALDCQMD-LSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYD 233 (321)
T ss_pred CCCcccCC-CCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccccce
Confidence 7 33 245678889999986 69999999977521 1 222211 1 1
Q ss_pred eEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 017101 305 PIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 305 ~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~ 357 (377)
.++... +.....++.|.||+|.+++++.|++|+++++|++.|...-..++..
T Consensus 234 ~~~~~~-~ri~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 234 VYKLRS-KRKPGKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred EEEEEe-cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 122322 2334457899999999999999999999999999998777766654
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.97 E-value=5.9e-08 Score=87.41 Aligned_cols=157 Identities=19% Similarity=0.175 Sum_probs=104.1
Q ss_pred chhHHHHhhcCEEEEccCC-CHH---HHHHHHHHHHhCCCcEEEcCCCCCCC-----Chhhhhc--cCceeccCHHHHhh
Q 017101 192 DEDLEVVKKAGIVLLQREI-PDS---VNIQVAKAARSAGVPVIFDAGGMDAP-----IPQELLN--FIDILSPNESELGR 260 (377)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~-~~~---~~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~ll~--~~dvl~~N~~E~~~ 260 (377)
++..+.+..++.+++.... ..+ .+..+++.++++++|+++||...... ....+++ ++++++||..|++.
T Consensus 41 ~e~~~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~ 120 (249)
T TIGR00694 41 EEVAELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIAS 120 (249)
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHH
Confidence 3445667788888876433 322 34455666778899999999754221 1234565 47999999999999
Q ss_pred ccCCCC--------CCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHH
Q 017101 261 LTGMPT--------DSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAV 332 (377)
Q Consensus 261 l~g~~~--------~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~ 332 (377)
|++... ...++..++++.+.+.+...|++|-+ .- ++.++++.+.+...++ ..-..+|.||++.+.+.+
T Consensus 121 L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~-~D--~i~~~~~~~~~~~g~~-~~~~~~GtGc~LssaIaa 196 (249)
T TIGR00694 121 LAGETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGE-VD--YVSDGTSVYTIHNGTE-LLGKITGSGCLLGSVVAA 196 (249)
T ss_pred HhCCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECC-Cc--EEEeCCEEEEECCCCh-HHhCCccchHHHHHHHHH
Confidence 998541 12456777888887764447777644 32 2344554444332211 112247999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH
Q 017101 333 GFVEGKSREECLRFAAAAAS 352 (377)
Q Consensus 333 ~l~~g~~l~~al~~a~~aAa 352 (377)
.+..|.++.+|+..|...-.
T Consensus 197 ~LA~g~~~~~A~~~A~~~~~ 216 (249)
T TIGR00694 197 FCAVEEDPLDAAISACLLYK 216 (249)
T ss_pred HHhcCCCHHHHHHHHHHHHH
Confidence 99999999999988874433
No 78
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.54 E-value=2e-06 Score=80.02 Aligned_cols=144 Identities=23% Similarity=0.257 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhCCC-cEEEcCC-----CCC---C----CChhhhhccCceeccCHHHHhhccCC------CCCCHHHHH
Q 017101 213 SVNIQVAKAARSAGV-PVIFDAG-----GMD---A----PIPQELLNFIDILSPNESELGRLTGM------PTDSYEQIS 273 (377)
Q Consensus 213 ~~~~~~~~~a~~~g~-~v~~D~~-----~~~---~----~~~~~ll~~~dvl~~N~~E~~~l~g~------~~~~~~~~~ 273 (377)
+...-+.+.+++.++ ++++||- +.. . -+.+++++.+|++.||--|+-.|++. ...+..++.
T Consensus 105 ~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~~~~~~i~~v~di~ 184 (523)
T KOG2598|consen 105 EIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEKREISKIQSVFDIA 184 (523)
T ss_pred HHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcccCCcccccHHHHH
Confidence 333334444444554 5888883 110 1 13578999999999999999998873 344667888
Q ss_pred HHHHHHHhcCCCEEEEeeCCCC----------------eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCC
Q 017101 274 EAVVKCHKMGVQQVLVKLGAKG----------------SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG 337 (377)
Q Consensus 274 ~~~~~l~~~g~~~vvvT~G~~G----------------~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g 337 (377)
..++.+.+.|+++|+++-|.-. ..+++.+.+++..+.. -.....+.|.|-++.++.+.-|++|
T Consensus 185 ~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~-~~~t~~tHGtgCtLaSAIASnLA~g 263 (523)
T KOG2598|consen 185 KDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSP-YLATKHTHGTGCTLASAIASNLARG 263 (523)
T ss_pred HHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEeccc-ccccccccCccchHHHHHHHHHhhc
Confidence 9999999999999999987422 2345555566665554 4567899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 017101 338 KSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 338 ~~l~~al~~a~~aAa~~~~~ 357 (377)
.|+.+|++.|...--.+++.
T Consensus 264 ~sl~qAv~~ai~yvq~Ai~~ 283 (523)
T KOG2598|consen 264 YSLLQAVQGAIEYVQNAIAI 283 (523)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999998766555543
No 79
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.51 E-value=3.5e-06 Score=73.77 Aligned_cols=130 Identities=24% Similarity=0.307 Sum_probs=83.7
Q ss_pred HHHHHHHhC--CCcEEEcCCC-------CCCCC----hhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcC
Q 017101 217 QVAKAARSA--GVPVIFDAGG-------MDAPI----PQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMG 283 (377)
Q Consensus 217 ~~~~~a~~~--g~~v~~D~~~-------~~~~~----~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g 283 (377)
.+.+..|+. +...++||-- .+++. .+.+.+.+|+++||..|++.|+|....+.++..++.+.++.+|
T Consensus 101 ~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~~I~t~eda~~a~~~lhq~~ 180 (308)
T KOG2599|consen 101 DIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGMEIRTEEDAKRAVEKLHQKG 180 (308)
T ss_pred HHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcCCeeccHHHHHHHHHHHHHhC
Confidence 334444443 4567889841 11121 1234456999999999999999999999999999999999999
Q ss_pred CCEEEEeeCCC----CeEEEE----eCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCC---CCHHHHHHHHH
Q 017101 284 VQQVLVKLGAK----GSALFV----EGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG---KSREECLRFAA 348 (377)
Q Consensus 284 ~~~vvvT~G~~----G~~~~~----~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g---~~l~~al~~a~ 348 (377)
++.||||...- |..++. .+.+.+.+.. |... ---||.||-|.|-+++-+..- .++..|+..+.
T Consensus 181 v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~i-pki~-~~FtGTGDLfsaLLla~~~~~~~~~~l~~a~e~~l 254 (308)
T KOG2599|consen 181 VKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLI-PKID-GVFTGTGDLFSALLLAWLHESPDNDDLSKAVEQVL 254 (308)
T ss_pred CCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEe-cccc-eEEecccHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 99999997543 422222 2222333222 2221 124799999998777766554 34555554443
No 80
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=98.20 E-value=0.0001 Score=65.47 Aligned_cols=154 Identities=25% Similarity=0.250 Sum_probs=96.0
Q ss_pred chhHHHHhhcCEEEEcc-CCCH---HHHHHHHHHHHhCCCcEEEcCCCCCC-----CChhhhh--ccCceeccCHHHHhh
Q 017101 192 DEDLEVVKKAGIVLLQR-EIPD---SVNIQVAKAARSAGVPVIFDAGGMDA-----PIPQELL--NFIDILSPNESELGR 260 (377)
Q Consensus 192 ~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~-----~~~~~ll--~~~dvl~~N~~E~~~ 260 (377)
++..+..+.++.+++.- .+.+ +....+.+.|++.++|+++||-+... ....+++ .++++++.|..|...
T Consensus 41 ~E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~a 120 (246)
T PF02110_consen 41 EEVEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAA 120 (246)
T ss_dssp TTHHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHH
T ss_pred HHHHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHH
Confidence 34556677788888864 4444 34567788899999999999975431 2234566 468999999999999
Q ss_pred ccCCCCC--------CHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHH
Q 017101 261 LTGMPTD--------SYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAV 332 (377)
Q Consensus 261 l~g~~~~--------~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~ 332 (377)
|.|.... +..+..+.++.+.++.- .+|+-.|+.-. ..++.+.+.++-- ..-.-.-||.|+...+-..+
T Consensus 121 Lag~~~~~kGVDs~~~~~~~~~~a~~lA~k~~-~vVvvTG~~D~--Isdg~~~~~i~nG-~~~l~~itGtGC~lgaliaa 196 (246)
T PF02110_consen 121 LAGEDSKAKGVDSGDSDEDAIEAAKQLAQKYN-CVVVVTGEVDY--ISDGNRVYRIPNG-SPLLSKITGTGCMLGALIAA 196 (246)
T ss_dssp HHTCCCCSCSSSSSCGSHHHHHHHHHHHHHTT-SEEEEESSSEE--EEESSCEEEECSS-SGGGGGSTTHHHHHHHHHHH
T ss_pred HhCcCCCCCCcCcCCcchHHHHHHHHHHHhcC-CEEEEecCCcE--EECCCeEEEeCCC-ChHhcceeccchHHHHHHHH
Confidence 9875421 12335677777776533 35555577655 4555555555432 22334569999988777777
Q ss_pred HHhCCCCHHHHHHHHHH
Q 017101 333 GFVEGKSREECLRFAAA 349 (377)
Q Consensus 333 ~l~~g~~l~~al~~a~~ 349 (377)
.+....+.-++...|..
T Consensus 197 f~av~~d~~~aa~~a~~ 213 (246)
T PF02110_consen 197 FLAVAEDPLEAAVAAVA 213 (246)
T ss_dssp HHCCCSSHHHHHHHHHH
T ss_pred HHhccccchHHHHHHHH
Confidence 77665666665554443
No 81
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=98.14 E-value=0.00025 Score=68.34 Aligned_cols=186 Identities=15% Similarity=0.136 Sum_probs=97.2
Q ss_pred eecCCChHHHHHHHHHHcCCCc-eEEEEecCCccHHHHHHHHHh-CCCCcc------cEEec--c--CCCCCCceEEEEE
Q 017101 100 QTLAGGKGANQAACGAKLSHPT-YFVGQVGEDANGKLITDALSG-CGVRLD------YMNVV--K--DGGVPTGHAVVML 167 (377)
Q Consensus 100 ~~~~GG~~~NvA~~la~LG~~v-~li~~vG~D~~G~~i~~~l~~-~gVd~~------~v~~~--~--~~~~~T~~~~~~~ 167 (377)
..+.||.+.-+|..++++|.++ .+.+. ..++...+.|.+ .+|-.- .+... + +++.++-.-+++-
T Consensus 98 ~~rmGGqAgimAn~la~lg~~~vV~~~p----~lsk~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I~E 173 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLKKVIAYTP----WLSKKQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRIFE 173 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEeCC----CCCHHHHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEEEE
Confidence 4689999999999999999874 33332 234455566633 122111 00000 0 0111222333333
Q ss_pred ecCCCee-----EEEECCCCC------CCCC-cCcCchhHHHHhh----cCEEEEccCC------CH-HH-------HHH
Q 017101 168 QSDGQNS-----IIIVGGTNM------SCWP-EKFGDEDLEVVKK----AGIVLLQREI------PD-SV-------NIQ 217 (377)
Q Consensus 168 ~~~g~~~-----~~~~~~~~~------~~~~-~~l~~~~~~~l~~----~~~~~~~~~~------~~-~~-------~~~ 217 (377)
.+.|.+- -+..+.+|. ..++ -...+++.+.+.. .|.++++|.. +. .. ..+
T Consensus 174 y~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~ 253 (463)
T PRK03979 174 FKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELKEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKE 253 (463)
T ss_pred eCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhccccccccHHHHHHHHHH
Confidence 3333322 011111111 1111 1233444455555 8999988722 11 11 122
Q ss_pred HHHHH--HhCCCcEEEcCCCCCCC-----ChhhhhccCceeccCHHHHhhcc---CC--------CCCCHHHHHHHHHHH
Q 017101 218 VAKAA--RSAGVPVIFDAGGMDAP-----IPQELLNFIDILSPNESELGRLT---GM--------PTDSYEQISEAVVKC 279 (377)
Q Consensus 218 ~~~~a--~~~g~~v~~D~~~~~~~-----~~~~ll~~~dvl~~N~~E~~~l~---g~--------~~~~~~~~~~~~~~l 279 (377)
.++.. +..++++-+...+.... ....+++++|.+-+||+|+..+. |. ..+..+++.+++..+
T Consensus 254 ~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~~L 333 (463)
T PRK03979 254 DIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEGAKIL 333 (463)
T ss_pred HHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHHHH
Confidence 33333 34578888988765322 23468889999999999998654 22 112346777777777
Q ss_pred Hh-cCCCEEEE
Q 017101 280 HK-MGVQQVLV 289 (377)
Q Consensus 280 ~~-~g~~~vvv 289 (377)
.+ .+++.+.|
T Consensus 334 ~~~~~leri~v 344 (463)
T PRK03979 334 LDELNLERVQV 344 (463)
T ss_pred HHHcCCCEEEE
Confidence 75 47765544
No 82
>PRK10565 putative carbohydrate kinase; Provisional
Probab=98.05 E-value=0.00028 Score=70.01 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=93.6
Q ss_pred HHHhhcCEEEEccCCCH-HHHHHHHHHHHhCCCcEEEcCCCCCCCChhh--hhccCceeccCHHHHhhccCCCCCCHH-H
Q 017101 196 EVVKKAGIVLLQREIPD-SVNIQVAKAARSAGVPVIFDAGGMDAPIPQE--LLNFIDILSPNESELGRLTGMPTDSYE-Q 271 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~-~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~--ll~~~dvl~~N~~E~~~l~g~~~~~~~-~ 271 (377)
+.++.++.+++...+.. +....+++.+++.+.|+++|+.... .+.. ......+|+||..|+..|++.+..+.+ +
T Consensus 316 ~~~~~~~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDAdaL~--ll~~~~~~~~~~VLTPh~gE~~rL~~~~~~~v~~~ 393 (508)
T PRK10565 316 ESLEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALN--LLAINPDKRHNRVITPHPGEAARLLGCSVAEIESD 393 (508)
T ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEchHHH--HHhhCccccCCeEECCCHHHHHHHhCCChhhhhhh
Confidence 34567888888654432 3334556777788899999996531 0000 011246999999999999985533322 3
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017101 272 ISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAA 350 (377)
Q Consensus 272 ~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~a 350 (377)
..+.++.+.+..-..|++ -|..-. +...+++.+..+. ...-.-++|.||.++|.+.+.+.+|.++.+|+..|+..
T Consensus 394 ~~~~a~~~a~~~~~~vvl-KG~~~i-I~~~~~~~~~~~~--G~~~ma~~GsGDvLaGiIaalla~g~~~~~Aa~~a~~l 468 (508)
T PRK10565 394 RLLSARRLVKRYGGVVVL-KGAGTV-IAAEPDALAIIDV--GNAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGCVA 468 (508)
T ss_pred HHHHHHHHHHHhCCEEEE-eCCCcE-EEcCCceEEEECC--CCCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 445566665543334555 455433 3333344444332 23445679999999998888888899999988888744
No 83
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=98.04 E-value=0.00046 Score=66.38 Aligned_cols=231 Identities=17% Similarity=0.120 Sum_probs=124.2
Q ss_pred ceecCCChHHHHHHHHHHcCCCceE-EEEecCCccHHHHHHHHHhCCCCcccE-----Eec----cC-CCCCCceEEEEE
Q 017101 99 SQTLAGGKGANQAACGAKLSHPTYF-VGQVGEDANGKLITDALSGCGVRLDYM-----NVV----KD-GGVPTGHAVVML 167 (377)
Q Consensus 99 ~~~~~GG~~~NvA~~la~LG~~v~l-i~~vG~D~~G~~i~~~l~~~gVd~~~v-----~~~----~~-~~~~T~~~~~~~ 167 (377)
...+.||.+.-.|..++++|+++.+ .+.. .++...+.|.+.+|-.-.+ ... +. .+.+.-.-+++-
T Consensus 86 ~~~rmGGnAgimAn~la~lg~~~Vi~~~~~----lsk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~IfE 161 (453)
T PRK14039 86 SEIRMGGNAGIMANVLSELGASRVVPNVAV----PSKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFVFD 161 (453)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEcCCC----CCHHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEEEE
Confidence 3589999999999999999998655 3321 3345555663322211100 000 00 011122223332
Q ss_pred ecCC---------------CeeEEEECCCCCCCCCcCcCchhHHHHh----hcCEEEEccCC-C----------HHHHHH
Q 017101 168 QSDG---------------QNSIIIVGGTNMSCWPEKFGDEDLEVVK----KAGIVLLQREI-P----------DSVNIQ 217 (377)
Q Consensus 168 ~~~g---------------~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~~~~~~~-~----------~~~~~~ 217 (377)
.+.| +|-++..+..+.. -...+++.+.+. ..|.++++|.. . .+...+
T Consensus 162 y~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~---l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~ 238 (453)
T PRK14039 162 FREGETFSLYGTRIRAPRENRFIATFDHLNFR---LFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLED 238 (453)
T ss_pred eCCCCEEecCCccEecCCCCeEEEecCCCCcc---ceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHH
Confidence 2233 3333332222221 123334444444 68999998732 1 122222
Q ss_pred ---HHHHH--HhCCCcEEEcCCCCCCC-----ChhhhhccCceeccCHHHHhhccCC---CC-----CCHHHHHHHHHHH
Q 017101 218 ---VAKAA--RSAGVPVIFDAGGMDAP-----IPQELLNFIDILSPNESELGRLTGM---PT-----DSYEQISEAVVKC 279 (377)
Q Consensus 218 ---~~~~a--~~~g~~v~~D~~~~~~~-----~~~~ll~~~dvl~~N~~E~~~l~g~---~~-----~~~~~~~~~~~~l 279 (377)
.++.. +..++++-+...+.... ....+++++|.+-+||+|+..+... .. .+.+++.+++..+
T Consensus 239 ~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l 318 (453)
T PRK14039 239 SLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQL 318 (453)
T ss_pred HHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHH
Confidence 23333 23467899988765322 3456889999999999999877543 22 2456777888877
Q ss_pred Hhc-CCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Q 017101 280 HKM-GVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVK 358 (377)
Q Consensus 280 ~~~-g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~ 358 (377)
.+. |++.+.|..- +-+++... .+. -+.+..+ +|+.+|+.+||.... .
T Consensus 319 ~~~~~le~l~vHT~--~y~l~i~~--------~~~--------------------~~~~~~~-~aL~fg~~~Aa~~A~-~ 366 (453)
T PRK14039 319 ASESGLQRLIIHTR--EFVLCVSK--------PDV--------------------KMAKKKI-EAMEFGLKCAGVYAA-S 366 (453)
T ss_pred HHHcCCCEEEEEec--ceEEEEec--------CCC--------------------CccHHHH-HHHHHHHHHHHHHHh-c
Confidence 754 8887766532 22222111 000 1223445 899999988886654 3
Q ss_pred CCCCCCCCHHHHH
Q 017101 359 GAIPSMPDRKSVL 371 (377)
Q Consensus 359 G~~~~~p~~e~i~ 371 (377)
|. ++++++++
T Consensus 367 G~---i~~~~~~~ 376 (453)
T PRK14039 367 GS---LDGREFVE 376 (453)
T ss_pred CC---CCChHHHH
Confidence 54 35666666
No 84
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.97 E-value=0.00084 Score=64.46 Aligned_cols=182 Identities=10% Similarity=0.084 Sum_probs=96.4
Q ss_pred ecCCChHHHHHHHHHHcCCCce-EEEEecCCccHHHHHHHHHhC-CCCcc------cEEec--c--CCCCCCceEEEEEe
Q 017101 101 TLAGGKGANQAACGAKLSHPTY-FVGQVGEDANGKLITDALSGC-GVRLD------YMNVV--K--DGGVPTGHAVVMLQ 168 (377)
Q Consensus 101 ~~~GG~~~NvA~~la~LG~~v~-li~~vG~D~~G~~i~~~l~~~-gVd~~------~v~~~--~--~~~~~T~~~~~~~~ 168 (377)
.+.||.+.-+|..++++|.++. +.+. ..++...+.|.+. +|-.- .+... + +++.++..-+++-.
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~----~ls~~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I~Ey 161 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTP----FLSKRQAEMFVATGNILYPVVENGKLVLKPPGEAYREGDPSKVNRIFEF 161 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCC----CCCHHHHHHhCCcCceeeccccCCceeeccchhccCCCCCCceEEEEEe
Confidence 6899999999999999998753 3333 2334455566543 12111 00000 0 01112223333333
Q ss_pred cCCC---------------eeEEEECCCCCCCCCcCcCchhHH----HHhhcCEEEEccCC------CH-----H---HH
Q 017101 169 SDGQ---------------NSIIIVGGTNMSCWPEKFGDEDLE----VVKKAGIVLLQREI------PD-----S---VN 215 (377)
Q Consensus 169 ~~g~---------------~~~~~~~~~~~~~~~~~l~~~~~~----~l~~~~~~~~~~~~------~~-----~---~~ 215 (377)
+.|. |-++..+..+.. -.+.++..+ .-..+|.++++|.. +. + ..
T Consensus 162 ~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~---l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~ 238 (446)
T TIGR02045 162 RKGTNFKLGGETIKVPRSGRFIVSSRPESLR---IETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERA 238 (446)
T ss_pred CCCCeeecCCceEeccCCCeEEEecCCcccc---ceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHH
Confidence 3333 322222222211 122333222 23457888888722 11 1 12
Q ss_pred HHHHHHHH-hCCCcEEEcCCCCCCC-----ChhhhhccCceeccCHHHHhhcc---CCC--------CCCHHHHHHHHHH
Q 017101 216 IQVAKAAR-SAGVPVIFDAGGMDAP-----IPQELLNFIDILSPNESELGRLT---GMP--------TDSYEQISEAVVK 278 (377)
Q Consensus 216 ~~~~~~a~-~~g~~v~~D~~~~~~~-----~~~~ll~~~dvl~~N~~E~~~l~---g~~--------~~~~~~~~~~~~~ 278 (377)
.+.++..+ +.++++-+...+.... ....+++++|.+-+||+|+..+. |.. .++.+++.+++..
T Consensus 239 ~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~ 318 (446)
T TIGR02045 239 KEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKI 318 (446)
T ss_pred HHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHH
Confidence 23333332 3678899988765322 33468899999999999998765 321 1235567777777
Q ss_pred HHhc-CCCEEEE
Q 017101 279 CHKM-GVQQVLV 289 (377)
Q Consensus 279 l~~~-g~~~vvv 289 (377)
+++. +++.+.|
T Consensus 319 l~~~~~leri~v 330 (446)
T TIGR02045 319 LLDELNLEVVQV 330 (446)
T ss_pred HHHHcCCCEEEE
Confidence 7754 7765554
No 85
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.95 E-value=0.00011 Score=65.61 Aligned_cols=172 Identities=21% Similarity=0.239 Sum_probs=106.0
Q ss_pred hHHHHhhcCEEEEccCCCH-HHHHHHHHHHHhCCCcEEEcCCCCCCCChh---hhhccCceeccCHHHHhhccCCCCCCH
Q 017101 194 DLEVVKKAGIVLLQREIPD-SVNIQVAKAARSAGVPVIFDAGGMDAPIPQ---ELLNFIDILSPNESELGRLTGMPTDSY 269 (377)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~---~ll~~~dvl~~N~~E~~~l~g~~~~~~ 269 (377)
..+.+++++.+++...+.. +...++++...+...++++|..... ... .....--|++|+.-|+..|++......
T Consensus 61 ~~~~~~~~~av~iGPGlg~~~~~~~~~~~~~~~~~p~VlDADaL~--~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~~~ 138 (242)
T PF01256_consen 61 ILELLEKADAVVIGPGLGRDEETEELLEELLESDKPLVLDADALN--LLAENPKKRNAPVILTPHPGEFARLLGKSVEIQ 138 (242)
T ss_dssp HHHHHCH-SEEEE-TT-SSSHHHHHHHHHHHHHCSTEEEECHHHH--CHHHCCCCSSSCEEEE-BHHHHHHHHTTTCHHC
T ss_pred hHhhhccCCEEEeecCCCCchhhHHHHHHHHhhcceEEEehHHHH--HHHhccccCCCCEEECCCHHHHHHHhCCcccch
Confidence 3466788999998754432 2334566666667889999985321 111 223456789999999999999765322
Q ss_pred HHHHHHHHHHHhc-CCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017101 270 EQISEAVVKCHKM-GVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAA 348 (377)
Q Consensus 270 ~~~~~~~~~l~~~-g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~ 348 (377)
++..+.++.+.+. ++ +++--|..-. ++..+++.+..+.- ..-.-+-|.||.+++-+..-+.++.++.+|+..|+
T Consensus 139 ~~~~~~a~~~a~~~~~--~vvLKG~~t~-I~~p~~~~~~n~~g--n~~la~gGsGDvLaGii~~llaq~~~~~~Aa~~av 213 (242)
T PF01256_consen 139 EDRIEAAREFAKEYGA--VVVLKGAVTI-IASPGGRVYVNPTG--NPGLATGGSGDVLAGIIAGLLAQGYDPFEAACLAV 213 (242)
T ss_dssp CSHHHHHHHHHHHHTS--EEEEESTSSE-EEEETSEEEEE------GGGSSTTHHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhhcCc--EEEEeCCCcE-EEecCcceeEeCCC--CCCCCCCCcccHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3455556655543 43 4455566555 45556666655432 34467889999998888888899999999998887
Q ss_pred HHHH----HHhcccCCCCCCCCHHHHHHHHh
Q 017101 349 AAAS----LCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 349 ~aAa----~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
..=+ ......|. + -+..||.+.|.
T Consensus 214 ~lHg~Ag~~~~~~~~~--~-~~a~dli~~iP 241 (242)
T PF01256_consen 214 YLHGRAGDLAAEKYGR--G-MLASDLIDNIP 241 (242)
T ss_dssp HHHHHHHHHHCTTCSS--C---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--c-CcHHHHHHhcC
Confidence 6433 33334443 3 36677777664
No 86
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.84 E-value=0.00097 Score=58.79 Aligned_cols=151 Identities=23% Similarity=0.210 Sum_probs=95.9
Q ss_pred chhHHHHhhcCEEEEc-cCCCH---HHHHHHHHHHHhCCCcEEEcCCCCC-----CCChhhhhcc--CceeccCHHHHhh
Q 017101 192 DEDLEVVKKAGIVLLQ-REIPD---SVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNF--IDILSPNESELGR 260 (377)
Q Consensus 192 ~~~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~--~dvl~~N~~E~~~ 260 (377)
++..+..+-++.+++. |.+.. +....+.+.|++.+.|+++||-+.. +....+++.+ .++++.|..|...
T Consensus 47 eE~~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~ 126 (265)
T COG2145 47 EEVEEFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAA 126 (265)
T ss_pred HHHHHHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHH
Confidence 3444566777777775 44443 3556778889999999999997542 2234556654 6999999999999
Q ss_pred ccCCCC--------CCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHH
Q 017101 261 LTGMPT--------DSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAV 332 (377)
Q Consensus 261 l~g~~~--------~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~ 332 (377)
|.|... ....+..+.++.+.+..- .+++-.|+.-+ ..++.+.+.+.-- ..-.-.-||+|+...|-..+
T Consensus 127 Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~~-~vvvvTG~vD~--Isdg~~~~~i~nG-~pll~~ItGtGCllgav~aa 202 (265)
T COG2145 127 LAGEAGGGKGVDAGDGAADAIEAAKKAAQKYG-TVVVVTGEVDY--ISDGTRVVVIHNG-SPLLGKITGTGCLLGAVVAA 202 (265)
T ss_pred HhcccccccccccccchhhHHHHHHHHHHHhC-cEEEEECCeeE--EEcCCeEEEEECC-CcHHhhhhccccHHHHHHHH
Confidence 885431 234566666666554422 45555577665 4555555444322 22334668999988777777
Q ss_pred HHhCCCC-HHHHHHH
Q 017101 333 GFVEGKS-REECLRF 346 (377)
Q Consensus 333 ~l~~g~~-l~~al~~ 346 (377)
.+....+ +-+|...
T Consensus 203 F~av~~d~~~~A~~~ 217 (265)
T COG2145 203 FLAVEKDPLLDAAAE 217 (265)
T ss_pred HHhcCCCHHHHHHHH
Confidence 7766666 3454443
No 87
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.54 E-value=0.0074 Score=58.16 Aligned_cols=141 Identities=22% Similarity=0.202 Sum_probs=88.0
Q ss_pred HHHhhcCEEEEccCCC------HHHH---HHHHHHHHhCCCcEEEcCCCCCCC----ChhhhhccCceeccCHHHHhhcc
Q 017101 196 EVVKKAGIVLLQREIP------DSVN---IQVAKAARSAGVPVIFDAGGMDAP----IPQELLNFIDILSPNESELGRLT 262 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~------~~~~---~~~~~~a~~~g~~v~~D~~~~~~~----~~~~ll~~~dvl~~N~~E~~~l~ 262 (377)
+.....|.++++|... .+.+ .+.++..++.++++-+...+.... ....+++++|-+-+||+|+..+.
T Consensus 220 ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~d~~~r~~i~~ilp~vDSlGmNE~ELa~ll 299 (453)
T PRK14038 220 EIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTPDETVREEILGLLGKFYSVGLNEVELASIM 299 (453)
T ss_pred hhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccchHHHHHHHHhhCccccccccCHHHHHHHH
Confidence 3445689999987321 1222 223333344678888888754221 12247889999999999998765
Q ss_pred C---C--------C--CCCHHHHHHHHHHHHhc-CCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHH
Q 017101 263 G---M--------P--TDSYEQISEAVVKCHKM-GVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTA 328 (377)
Q Consensus 263 g---~--------~--~~~~~~~~~~~~~l~~~-g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~a 328 (377)
. . . ..+..++.+++..+++. |++.+.+.. .+-+++... .
T Consensus 300 ~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gleri~vHT--~~y~l~i~~----------~--------------- 352 (453)
T PRK14038 300 EVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKRIHFHT--YGYYLALTK----------Y--------------- 352 (453)
T ss_pred HHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCEEEEEe--cceeEEEec----------C---------------
Confidence 3 2 1 12567788888887764 777665542 121111100 0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHH
Q 017101 329 SFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLL 374 (377)
Q Consensus 329 g~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l 374 (377)
++..+++|+.+|+.+||.... .|.+ .++++++.-+
T Consensus 353 -------~~~~~~~aL~f~~~~AaarA~-~G~i---~~~~d~~~~l 387 (453)
T PRK14038 353 -------RGEHVRDALLFAALAAAAKAM-LGNI---EKIDDVRKAL 387 (453)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHH-cCCC---CCHHHHHHHh
Confidence 567799999999999998775 5654 5677776544
No 88
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.32 E-value=0.0026 Score=61.98 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=72.9
Q ss_pred ecCCChHHHHHHHHHHcCC-CceEEEEecCCccHHHHHHHHHhCCCCcccE--------Eecc--CCCCCCceEEEEEec
Q 017101 101 TLAGGKGANQAACGAKLSH-PTYFVGQVGEDANGKLITDALSGCGVRLDYM--------NVVK--DGGVPTGHAVVMLQS 169 (377)
Q Consensus 101 ~~~GG~~~NvA~~la~LG~-~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v--------~~~~--~~~~~T~~~~~~~~~ 169 (377)
.+.||.+.-.|..++.++. +|.+.+.++. +.+.+.| +.+|-.-.+ ...+ .++.+.-.-+++-.+
T Consensus 92 ~r~GGnA~imAn~la~l~~~~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlEy~ 166 (444)
T PF04587_consen 92 ERMGGNAGIMANRLANLEGCPVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILEYK 166 (444)
T ss_dssp EEEESHHHHHHHHHCCTT-SEEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEEE-
T ss_pred cccCchHHHHHHHHHhCCCCEEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEEcC
Confidence 3599999999999998874 4445544543 4556666 322211100 0000 000122223333333
Q ss_pred CC-----------CeeEEEECCCCCCCCCcCcCchhHHHHh----hcCEEEEccCCC-----------HHH---HHHHHH
Q 017101 170 DG-----------QNSIIIVGGTNMSCWPEKFGDEDLEVVK----KAGIVLLQREIP-----------DSV---NIQVAK 220 (377)
Q Consensus 170 ~g-----------~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~~~~~~~~-----------~~~---~~~~~~ 220 (377)
.| +|-++..+..+.. -...+.+.+.+. ..|.++++|... .+. ..+.++
T Consensus 167 ~G~~~~~~~aPraNRfI~s~D~~N~~---l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~ 243 (444)
T PF04587_consen 167 KGEKWGDITAPRANRFIVSSDPYNPR---LSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIK 243 (444)
T ss_dssp TTEEETTEE-SS-EEEEEEE-SSGGG---TS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHH
T ss_pred CCCeecceecCcCceEEEecCCCCcc---ccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHH
Confidence 33 2333333322222 122333444444 489999987221 111 223333
Q ss_pred HHH-hCCCcEEEcCCCCCCC-----ChhhhhccCceeccCHHHHhhcc
Q 017101 221 AAR-SAGVPVIFDAGGMDAP-----IPQELLNFIDILSPNESELGRLT 262 (377)
Q Consensus 221 ~a~-~~g~~v~~D~~~~~~~-----~~~~ll~~~dvl~~N~~E~~~l~ 262 (377)
..+ ..+++|-+...+.... ....+++++|.+-+||+|+..+.
T Consensus 244 ~l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~ 291 (444)
T PF04587_consen 244 LLKSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQELANLL 291 (444)
T ss_dssp HHH-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHH
T ss_pred hccCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHHHHHH
Confidence 444 6889999998866432 34578899999999999998764
No 89
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.096 Score=47.88 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=89.2
Q ss_pred HHhhcCEEEEccCCCH-HHHHHHHHHHHhCC-CcEEEcCCCCC-CCChhhhh-ccCceeccCHHHHhhccCCCCCCH-HH
Q 017101 197 VVKKAGIVLLQREIPD-SVNIQVAKAARSAG-VPVIFDAGGMD-APIPQELL-NFIDILSPNESELGRLTGMPTDSY-EQ 271 (377)
Q Consensus 197 ~l~~~~~~~~~~~~~~-~~~~~~~~~a~~~g-~~v~~D~~~~~-~~~~~~ll-~~~dvl~~N~~E~~~l~g~~~~~~-~~ 271 (377)
...+.+.+++...+-. +...++++..-+.. .|+++|..... -.....+. ..--|++|+.-|++.|++.+..+. .+
T Consensus 98 ~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~~p~ViDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~g~~~~~~~~~ 177 (284)
T COG0063 98 LVERADAVVIGPGLGRDAEGQEALKELLSSDLKPLVLDADALNLLAELPDLLDERKVVLTPHPGEFARLLGTEVDEIEVD 177 (284)
T ss_pred hhccCCEEEECCCCCCCHHHHHHHHHHHhccCCCEEEeCcHHHHHHhCcccccCCcEEECCCHHHHHHhcCCcccccccc
Confidence 3466788888743322 22233444443434 89999987532 00011122 122789999999999998544332 23
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 017101 272 ISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGK-SREECLRFAAAA 350 (377)
Q Consensus 272 ~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~-~l~~al~~a~~a 350 (377)
-.++++.+.+.. ..+||--|..-+ +...+++.+..+. ...-.-+=|.||.+++-...-|.++. ++.+|+..|+..
T Consensus 178 r~~~a~~~a~~~-~~vvVLKG~~tv-I~~~~g~~~~n~~--G~~~ma~GGtGDvLaGii~alLAq~~~~~~~Aa~~g~~~ 253 (284)
T COG0063 178 RLEAARELAAKY-GAVVVLKGAVTV-IADPDGEVFVNPT--GNPGMATGGTGDVLAGIIGALLAQGPADPLEAAAAGAWL 253 (284)
T ss_pred hHHHHHHHHHHc-CCEEEEeCCCCE-EEcCCCcEEEcCC--CCHHhccCcchHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 345556655542 335555566555 2333434433322 12234566899997665555555551 344555544433
Q ss_pred ---HH-HHhcccCCCCCCCCHHHHHHHHh
Q 017101 351 ---AS-LCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 351 ---Aa-~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
|+ +.-...| -.+..|+.+.+.
T Consensus 254 h~~ag~la~~~~g----~~~a~Dl~~~ip 278 (284)
T COG0063 254 HGRAGELAAKKHG----GLTATDLIEAIP 278 (284)
T ss_pred HHHHHHHHhhccC----CCCHHHHHHHHH
Confidence 33 2333333 135666665554
No 90
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.039 Score=48.70 Aligned_cols=155 Identities=21% Similarity=0.309 Sum_probs=92.1
Q ss_pred HHHhhcCEEEEccCCCH-----HHHHHHHHHHHhCCCcEEEcCCCCCC--CChhhhhc-c-CceeccCHHHHhhccCCCC
Q 017101 196 EVVKKAGIVLLQREIPD-----SVNIQVAKAARSAGVPVIFDAGGMDA--PIPQELLN-F-IDILSPNESELGRLTGMPT 266 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~-----~~~~~~~~~a~~~g~~v~~D~~~~~~--~~~~~ll~-~-~dvl~~N~~E~~~l~g~~~ 266 (377)
+.+.+-..+++...+-. .....+++.++++++|+++|..+.+- ...+.++. + .-+++||.-|+..|++...
T Consensus 97 k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l 176 (306)
T KOG3974|consen 97 KLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAEL 176 (306)
T ss_pred HHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHHhh
Confidence 35677788888654322 23567889999999999999987541 12222332 2 3578999999999987522
Q ss_pred C---CHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHH--h--CCCC
Q 017101 267 D---SYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGF--V--EGKS 339 (377)
Q Consensus 267 ~---~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l--~--~g~~ 339 (377)
. +...+...+..+ ....++--|+.-. +++++.+....+. .....-.=|-||..++.+..-+ . ....
T Consensus 177 ~~~d~~~~~~~L~~~l----~nv~vvqKG~~D~-ils~~~ev~~~s~--eGs~kRcGGQGDiLaGsla~fl~w~k~~~~e 249 (306)
T KOG3974|consen 177 DKVDSHSQMQHLAAEL----MNVTVVQKGESDK-ILSPDSEVRVCST--EGSLKRCGGQGDILAGSLATFLSWAKLLSGE 249 (306)
T ss_pred ccccchHHHHHHHHHh----cCeEEEEecCCce-eeCCCCeeEEccC--CCCccccCCCcchhhhHHHHHHHHHHhccCC
Confidence 1 122233333222 3356777788776 4556665544432 2234566789999988765433 2 2223
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 017101 340 REECLRFAAAAASLCVQV 357 (377)
Q Consensus 340 l~~al~~a~~aAa~~~~~ 357 (377)
..++.-.|..+++..+.+
T Consensus 250 ~~~~~~~a~~a~s~~vr~ 267 (306)
T KOG3974|consen 250 QDSAAFLAAVAGSIMVRR 267 (306)
T ss_pred ccchhhhhhhhhHHHHHH
Confidence 335555565555555443
No 91
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=94.42 E-value=0.33 Score=47.30 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=80.8
Q ss_pred eecCCChHHHHHHHHHHcCC-CceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCC-------
Q 017101 100 QTLAGGKGANQAACGAKLSH-PTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDG------- 171 (377)
Q Consensus 100 ~~~~GG~~~NvA~~la~LG~-~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g------- 171 (377)
..+.||.+.-.|..++++|. +|.+.+.+.. +.....+.+.+|-.-.... ...+.-.-+++-.+.|
T Consensus 102 ~~~mGGnAgimAn~la~~g~~~Vil~~p~~~----k~~~~L~~d~~i~~p~~e~---~~~~d~IHlIlEy~~G~~~~~~~ 174 (445)
T cd01938 102 ELRMGGNAGLMANRLAGEGDLKVLLGVPQSS----KLQAELFLDGPIVVPTFEN---LIEEDEIHLILEYPRGESWGDFV 174 (445)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEecCCCc----HHHHHhCCCCCeeeccccc---CCCCCccEEEEEcCCCCEecceE
Confidence 58999999999999999998 7777776543 2333333321211110000 0112222333333333
Q ss_pred ----CeeEEEECCCCCCCCCcCcCchhHHHHh-h-cCEEEEccCC-------CHHHHHHHHHHHH------hCCCcEEEc
Q 017101 172 ----QNSIIIVGGTNMSCWPEKFGDEDLEVVK-K-AGIVLLQREI-------PDSVNIQVAKAAR------SAGVPVIFD 232 (377)
Q Consensus 172 ----~~~~~~~~~~~~~~~~~~l~~~~~~~l~-~-~~~~~~~~~~-------~~~~~~~~~~~a~------~~g~~v~~D 232 (377)
+|-++..+..+ +....+++.+.+. . .|.++++|.. ......+.++.++ ...+++-|.
T Consensus 175 aPraNRfI~~~d~~n----~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E 250 (445)
T cd01938 175 APRANRFIFHDDDNN----PMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLE 250 (445)
T ss_pred cCCCCeEEEecCCcc----hhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEE
Confidence 33333222221 1112223333333 3 7999988722 1222333333322 234788888
Q ss_pred CCCCCC-----CChhhhhccCceeccCHHHHhhcc
Q 017101 233 AGGMDA-----PIPQELLNFIDILSPNESELGRLT 262 (377)
Q Consensus 233 ~~~~~~-----~~~~~ll~~~dvl~~N~~E~~~l~ 262 (377)
..+... .....+++++|-+-+||.|+..+.
T Consensus 251 ~As~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~ 285 (445)
T cd01938 251 LASTVDEELREEILHEVVPYVDSLGLNEQELANLL 285 (445)
T ss_pred ecccccHHHHHHHHHHhcccccccccCHHHHHHHH
Confidence 876532 233567889999999999998765
No 92
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=92.02 E-value=6.3 Score=37.28 Aligned_cols=94 Identities=18% Similarity=0.282 Sum_probs=54.1
Q ss_pred HHHhhcCEEEEccCCC------H-HH-------HHHHHHHHHh-CCCcEEEcCCCCCC-----CChhhhhccCceeccCH
Q 017101 196 EVVKKAGIVLLQREIP------D-SV-------NIQVAKAARS-AGVPVIFDAGGMDA-----PIPQELLNFIDILSPNE 255 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~------~-~~-------~~~~~~~a~~-~g~~v~~D~~~~~~-----~~~~~ll~~~dvl~~N~ 255 (377)
+.....|..+++|..+ + .+ ..+-++..++ .++++-+...+... .....+++.++-+-+|+
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~SvGldE 300 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVYSVGLDE 300 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccccHHHHHHHHHHHHhhhhhcCCCH
Confidence 4456688888876221 1 11 2233444455 67888888875532 23445788999999999
Q ss_pred HHHhhccCCC-----------CCCHHHHHHHHHHHH-hcCCCEEEE
Q 017101 256 SELGRLTGMP-----------TDSYEQISEAVVKCH-KMGVQQVLV 289 (377)
Q Consensus 256 ~E~~~l~g~~-----------~~~~~~~~~~~~~l~-~~g~~~vvv 289 (377)
.|+..+...- .++..++.+.+..++ +.|++.+-|
T Consensus 301 ~ElA~vl~vlG~~eLa~~I~~~~~~~avieg~~~L~~e~~~e~i~v 346 (466)
T COG4809 301 VELANVLNVLGYRELADRIISKDDIEAVIEGAMILLDELGLERIHV 346 (466)
T ss_pred HHHHHHHHhhChHHHHHhhhccccHHHHHHHHHHHHHhcCccEEEE
Confidence 9987654321 123445555444444 446664443
No 93
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=85.63 E-value=10 Score=33.26 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=57.3
Q ss_pred CEEEEccCC---CHHHHHHHHHHHHhCCCcEEEcCCCCCC-CChhhhhccCcee-----ccCHHHHhhccCCCCCCHHHH
Q 017101 202 GIVLLQREI---PDSVNIQVAKAARSAGVPVIFDAGGMDA-PIPQELLNFIDIL-----SPNESELGRLTGMPTDSYEQI 272 (377)
Q Consensus 202 ~~~~~~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~ll~~~dvl-----~~N~~E~~~l~g~~~~~~~~~ 272 (377)
+.+.++|.- ..+.+..+++.+++.|+.+.+|.++... .....+++++|.+ .++.+..+.++|.+ .+.+
T Consensus 40 gGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~---~~~i 116 (213)
T PRK10076 40 GGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMN---LPRV 116 (213)
T ss_pred CEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCC---HHHH
Confidence 566666532 3466789999999999999999997643 2445677777655 45677777888854 3456
Q ss_pred HHHHHHHHhcCCCE
Q 017101 273 SEAVVKCHKMGVQQ 286 (377)
Q Consensus 273 ~~~~~~l~~~g~~~ 286 (377)
.+.++.+.+.|...
T Consensus 117 l~nl~~l~~~g~~v 130 (213)
T PRK10076 117 LENLRLLVSEGVNV 130 (213)
T ss_pred HHHHHHHHhCCCcE
Confidence 66677777776653
No 94
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=78.92 E-value=21 Score=32.35 Aligned_cols=86 Identities=24% Similarity=0.392 Sum_probs=59.6
Q ss_pred hcCEEEEccCCC---HHHHHHHHHHHHhCCCcEEEcCCCCCCC-ChhhhhccCceec-----cCHHHHhhccCCCCCCHH
Q 017101 200 KAGIVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGMDAP-IPQELLNFIDILS-----PNESELGRLTGMPTDSYE 270 (377)
Q Consensus 200 ~~~~~~~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~~~ll~~~dvl~-----~N~~E~~~l~g~~~~~~~ 270 (377)
..+.+.+++.-| .+.+..+++.|++.|+++.+|.++.... ..+.+++.+|.+. .+.+-.+.++|.+. +
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~---~ 159 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADN---E 159 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCc---H
Confidence 456677776443 4667889999999999999999976433 3356777777653 34444788887654 5
Q ss_pred HHHHHHHHHHhcCCCEEE
Q 017101 271 QISEAVVKCHKMGVQQVL 288 (377)
Q Consensus 271 ~~~~~~~~l~~~g~~~vv 288 (377)
...+.++.+.+.|+...+
T Consensus 160 ~vl~~~~~l~~~g~~ve~ 177 (260)
T COG1180 160 PVLENLELLADLGVHVEI 177 (260)
T ss_pred HHHHHHHHHHcCCCeEEE
Confidence 677777778777665433
No 95
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=76.28 E-value=1.5 Score=35.64 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCceEEEEecCC--ccHHHHHHHHHhCCCCccc
Q 017101 107 GANQAACGAKLSHPTYFVGQVGED--ANGKLITDALSGCGVRLDY 149 (377)
Q Consensus 107 ~~NvA~~la~LG~~v~li~~vG~D--~~G~~i~~~l~~~gVd~~~ 149 (377)
..++...+..|+.++.+.-..|+| ...+.+.+...+.||.+.+
T Consensus 52 ~~~tl~~~~~l~a~~~v~~~~G~d~~~ip~~v~~~~d~~~ikv~~ 96 (141)
T PRK03975 52 ARETLAFAETLNAPVRVTIPAGTDLFDIPKRIYKEADEAGIKVPY 96 (141)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCcHHHhHHHHHHHhhHcCCeecc
Confidence 456666677789999999999998 5678888888999988765
No 96
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=70.44 E-value=1.8 Score=32.29 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=17.2
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|||+.+|+++++|+.
T Consensus 56 ~tQrEIa~~lGiS~atIsR 74 (94)
T TIGR01321 56 MSQREIASKLGVSIATITR 74 (94)
T ss_pred CCHHHHHHHhCCChhhhhH
Confidence 6999999999999998873
No 97
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=67.05 E-value=1.6 Score=30.48 Aligned_cols=19 Identities=32% Similarity=0.097 Sum_probs=17.1
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
.+|+|+|+.+|.+|.||..
T Consensus 15 ltQ~elA~~vgVsRQTi~~ 33 (68)
T COG1476 15 LTQEELAKLVGVSRQTIIA 33 (68)
T ss_pred cCHHHHHHHcCcCHHHHHH
Confidence 5899999999999999863
No 98
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=66.27 E-value=34 Score=29.87 Aligned_cols=91 Identities=22% Similarity=0.161 Sum_probs=57.2
Q ss_pred HHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCCCC--Chhhhh-ccCceec--cCHHHHhhccCCCCCCHHH
Q 017101 197 VVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAP--IPQELL-NFIDILS--PNESELGRLTGMPTDSYEQ 271 (377)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~--~~~~ll-~~~dvl~--~N~~E~~~l~g~~~~~~~~ 271 (377)
.-..+||+.+.+..+.++....++.|++.|..+.+|.-+.+.. ....+- -.+|++. .+.+. ...|.... .+
T Consensus 77 ~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~--q~~G~~~~--~~ 152 (217)
T COG0269 77 FEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDA--QAAGKSWG--ED 152 (217)
T ss_pred HHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccH--hhcCCCcc--HH
Confidence 3467899999998899999999999999999999998655321 111222 2455543 33332 22454321 23
Q ss_pred HHHHHHHHHhcCCCEEEEeeC
Q 017101 272 ISEAVVKCHKMGVQQVLVKLG 292 (377)
Q Consensus 272 ~~~~~~~l~~~g~~~vvvT~G 292 (377)
..+..+++.+.|.+ +-||-|
T Consensus 153 ~l~~ik~~~~~g~~-vAVaGG 172 (217)
T COG0269 153 DLEKIKKLSDLGAK-VAVAGG 172 (217)
T ss_pred HHHHHHHhhccCce-EEEecC
Confidence 45556777766653 556644
No 99
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=61.08 E-value=20 Score=29.37 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=40.1
Q ss_pred EEEEc-cCCCHHHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHH
Q 017101 203 IVLLQ-REIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESE 257 (377)
Q Consensus 203 ~~~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E 257 (377)
.+.++ |+...+.+.++++.+++.|.++.++.++...+..+++++.+|+++....+
T Consensus 64 gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~l~~g~y~ 119 (147)
T TIGR02826 64 CVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDYLKTGRWI 119 (147)
T ss_pred EEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCEEEEChHH
Confidence 34444 56434557788899999999999999865434567788999999877743
No 100
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=56.10 E-value=1.6e+02 Score=27.61 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCcee-----ccCHHHHhhccCC-CCCCHHHHHHHHHHHHhcCCCEE
Q 017101 214 VNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDIL-----SPNESELGRLTGM-PTDSYEQISEAVVKCHKMGVQQV 287 (377)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl-----~~N~~E~~~l~g~-~~~~~~~~~~~~~~l~~~g~~~v 287 (377)
.+.++++.+++.|+.+.++.++......+.+....|.+ .++++....+.+. .....+.+.+.++.+.+.+.+.+
T Consensus 146 ~l~eli~~~k~~Gi~~~L~TNG~~~e~l~~L~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~~~~~~~ 225 (322)
T PRK13762 146 YLPELIEEFHKRGFTTFLVTNGTRPDVLEKLEEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPSKKTRTV 225 (322)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHhCCCCEE
Confidence 46688899999999999999885433444553444443 3566666777653 23456778888888887766544
Q ss_pred E
Q 017101 288 L 288 (377)
Q Consensus 288 v 288 (377)
+
T Consensus 226 i 226 (322)
T PRK13762 226 I 226 (322)
T ss_pred E
Confidence 3
No 101
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=55.99 E-value=3.6 Score=38.43 Aligned_cols=19 Identities=11% Similarity=0.002 Sum_probs=17.1
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
-+|+|||++||+||++|+.
T Consensus 30 ~tQ~eIA~~lgiSR~~VsR 48 (318)
T PRK15418 30 LTQSEIGERLGLTRLKVSR 48 (318)
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 4899999999999999873
No 102
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=55.62 E-value=1.9e+02 Score=27.62 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCc-EEEcCCCCC
Q 017101 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP-VIFDAGGMD 237 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~ 237 (377)
+.+.++|++++.. +.+...++...+.+.|.+ +++|.++..
T Consensus 61 ~~~~~~Divf~a~--~~~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 61 DALKKLDIIITCQ--GGDYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred hHhcCCCEEEECC--CHHHHHHHHHHHHhCCCCeEEEECChHH
Confidence 3457789988754 666777888888888974 899998653
No 103
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=53.69 E-value=0.79 Score=29.43 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
++|.|||+.+++|+.++.-++.
T Consensus 18 ~t~~ela~~~~is~~tv~~~l~ 39 (48)
T PF13412_consen 18 ITQKELAEKLGISRSTVNRYLK 39 (48)
T ss_dssp S-HHHHHHHHTS-HHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 7899999999999888875443
No 104
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=52.21 E-value=25 Score=22.54 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=24.1
Q ss_pred ccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 017101 252 SPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVL 288 (377)
Q Consensus 252 ~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vv 288 (377)
+++.+|+..|+|.. .....++.|.+.|+..++
T Consensus 2 fLT~~El~elTG~k-----~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTGYK-----RPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHCCC-----CHHHHHHHHHHCCCeeEE
Confidence 57889999999976 345667788888876443
No 105
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=52.01 E-value=33 Score=26.70 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=30.3
Q ss_pred HHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCC
Q 017101 195 LEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD 237 (377)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 237 (377)
.+.+..+|++++. .+.....++...+.+.|+ .++|.++..
T Consensus 61 ~~~~~~~Dvvf~a--~~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 61 PEELSDVDVVFLA--LPHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp GHHHTTESEEEE---SCHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred hhHhhcCCEEEec--CchhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 3567899999886 467777788888888888 789998654
No 106
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=51.92 E-value=80 Score=26.63 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCcEEEcCCCCCCCChhhhhc--cCceecc----CHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 017101 215 NIQVAKAARSAGVPVIFDAGGMDAPIPQELLN--FIDILSP----NESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVL 288 (377)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~--~~dvl~~----N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vv 288 (377)
+.++++.+++.|..+.+.+++......+.+++ ..|.+.+ ..++...+.|.+....+...+.++.+.+.|.+..+
T Consensus 79 l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i 158 (191)
T TIGR02495 79 LPDFLRKVRELGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFEL 158 (191)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEE
Confidence 56778888888988888888754333334443 2454433 34456667775433223677888888888876444
Q ss_pred E
Q 017101 289 V 289 (377)
Q Consensus 289 v 289 (377)
.
T Consensus 159 ~ 159 (191)
T TIGR02495 159 R 159 (191)
T ss_pred E
Confidence 3
No 107
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=51.36 E-value=2.5 Score=38.08 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=26.4
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
+.|+||.+.+||||++++.+.. .+++.|.+
T Consensus 211 i~Q~eL~r~lglsktTvsR~L~--~LEk~GlI 240 (258)
T COG2512 211 ITQAELRRALGLSKTTVSRILR--RLEKRGLI 240 (258)
T ss_pred EeHHHHHHhhCCChHHHHHHHH--HHHhCCce
Confidence 7899999999999999988777 88888855
No 108
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.09 E-value=82 Score=28.30 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHH------hhcc--CC------C-CCCHHHHHHHHH
Q 017101 213 SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESEL------GRLT--GM------P-TDSYEQISEAVV 277 (377)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~------~~l~--g~------~-~~~~~~~~~~~~ 277 (377)
+-+..+.+.+++.|++++-++-.. ...+.+.+++|++++--.+. +.+. |. . ..+.+++..+++
T Consensus 66 ~gl~~L~~~~~~~Gl~~~Tev~d~--~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e 143 (250)
T PRK13397 66 QGIRYLHEVCQEFGLLSVSEIMSE--RQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALS 143 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCH--HHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHH
Confidence 446677888889999998887542 33455667888887544333 2222 11 1 246788999999
Q ss_pred HHHhcCCCEEEEee-CCCC
Q 017101 278 KCHKMGVQQVLVKL-GAKG 295 (377)
Q Consensus 278 ~l~~~g~~~vvvT~-G~~G 295 (377)
.+.+.|.+.++++. |-.+
T Consensus 144 ~i~~~Gn~~i~L~eRg~~~ 162 (250)
T PRK13397 144 YLQDTGKSNIILCERGVRG 162 (250)
T ss_pred HHHHcCCCeEEEEccccCC
Confidence 99988887777665 6544
No 109
>PHA00438 hypothetical protein
Probab=51.01 E-value=13 Score=26.44 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=14.4
Q ss_pred cCchHHHHHHHHHHHh
Q 017101 320 TGAGDTFTASFAVGFV 335 (377)
Q Consensus 320 tGAGDaF~ag~l~~l~ 335 (377)
.|..++|++||++|+.
T Consensus 47 ~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 47 AGYSEAFIAGFLAGLQ 62 (81)
T ss_pred cCCcHHHHHHHHHHHH
Confidence 6999999999999973
No 110
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=50.65 E-value=3.3 Score=26.09 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=12.9
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
.++.+||+.||.+++||.
T Consensus 21 ~s~~~IA~~lg~s~sTV~ 38 (44)
T PF13936_consen 21 MSIREIAKRLGRSRSTVS 38 (44)
T ss_dssp --HHHHHHHTT--HHHHH
T ss_pred CCHHHHHHHHCcCcHHHH
Confidence 578999999999999886
No 111
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.45 E-value=13 Score=36.65 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=53.3
Q ss_pred CCceEEEEecCCccHHHH-HHHHHhCCCCcccEEeccCCCCCC--ceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhH
Q 017101 119 HPTYFVGQVGEDANGKLI-TDALSGCGVRLDYMNVVKDGGVPT--GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDL 195 (377)
Q Consensus 119 ~~v~li~~vG~D~~G~~i-~~~l~~~gVd~~~v~~~~~~~~~T--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 195 (377)
.++.++-..|.|..+..+ ...|++.||..+.+... ...|. --++.++.+..+. -+.+.+...
T Consensus 41 WKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~--dR~Pi~DVPAVYFV~Pt~eN-------------id~i~~Dl~ 105 (621)
T KOG1301|consen 41 WKVLILDRFGQDIISPLLRVKELREHGITLHLLITS--DRDPIPDVPAVYFVSPTEEN-------------IDRIIQDLS 105 (621)
T ss_pred eEEEEEecccchhhcccccHHHHHhcCcEEEEeecc--ccCCCCCCCeEEEeCCchHh-------------HHHHHHHHH
Confidence 356677778888777665 68899999988776654 21121 1122222221110 012222222
Q ss_pred HHHhhcCEEEEccCCCHHHHHHHHHHHHhCCC
Q 017101 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGV 227 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ 227 (377)
..+...-++-+...++...++.++..+.+.|.
T Consensus 106 ~~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~ 137 (621)
T KOG1301|consen 106 KGLYDSYYLNFISSISRSLLEDLASAASETGA 137 (621)
T ss_pred HhhhhhheeeccccccHHHHHHHHHHHhhcch
Confidence 34444556666677888888888877777664
No 112
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=48.69 E-value=3.7 Score=29.15 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.7
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
.++.|||+.|++|.++|..++.
T Consensus 33 lS~kEIAe~LGIS~~TVk~~l~ 54 (73)
T TIGR03879 33 KTASEIAEELGRTEQTVRNHLK 54 (73)
T ss_pred CCHHHHHHHHCcCHHHHHHHHh
Confidence 4789999999999999987776
No 113
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=48.50 E-value=4 Score=26.72 Aligned_cols=19 Identities=32% Similarity=0.176 Sum_probs=15.1
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+++++++++-
T Consensus 10 ls~~~la~~~gis~~~i~~ 28 (55)
T PF01381_consen 10 LSQKELAEKLGISRSTISR 28 (55)
T ss_dssp S-HHHHHHHHTS-HHHHHH
T ss_pred CCHHHHHHHhCCCcchhHH
Confidence 6899999999999888874
No 114
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=48.24 E-value=4.2 Score=29.38 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=14.3
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
.+|.|+|+.+|+++++|+
T Consensus 32 ltQ~e~A~~lgisq~~vS 49 (80)
T PF13744_consen 32 LTQAELAERLGISQPRVS 49 (80)
T ss_dssp --HHHHHHHHTS-HHHHH
T ss_pred CCHHHHHHHHCCChhHHH
Confidence 589999999999999987
No 115
>TIGR00721 tfx DNA-binding protein, Tfx family. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.
Probab=48.19 E-value=9.9 Score=30.68 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=19.0
Q ss_pred cceecchHHHhhcCCCCccceee
Q 017101 13 QLKFQNILAKQLNKPINTIPFHF 35 (377)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (377)
+=.+|.|||+.|++|+++|+.+.
T Consensus 20 ~GlTq~EIAe~LgiS~stV~~~e 42 (137)
T TIGR00721 20 KGLSQKEIAKELKTTRANVSAIE 42 (137)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 34689999999999999998533
No 116
>PRK04148 hypothetical protein; Provisional
Probab=45.29 E-value=1.6e+02 Score=23.66 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCC
Q 017101 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAG 234 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (377)
+....+|+++-. ..|++....+++.|++.++.+++-+=
T Consensus 73 ~~y~~a~liysi-rpp~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 73 EIYKNAKLIYSI-RPPRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred HHHhcCCEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 556778887754 45778888999999999999888763
No 117
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=44.22 E-value=18 Score=25.61 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=15.8
Q ss_pred CccCchHHHHHHHHHHHhC
Q 017101 318 DTTGAGDTFTASFAVGFVE 336 (377)
Q Consensus 318 dttGAGDaF~ag~l~~l~~ 336 (377)
...|..|+|++||+.|+..
T Consensus 45 r~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQY 63 (77)
T ss_pred HHccccHHHHHHHHHHHHH
Confidence 4459999999999999743
No 118
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=43.99 E-value=39 Score=25.59 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=26.1
Q ss_pred cCccCchHHHHHHHHHHHhCC-CCHHHHHHHH
Q 017101 317 IDTTGAGDTFTASFAVGFVEG-KSREECLRFA 347 (377)
Q Consensus 317 vdttGAGDaF~ag~l~~l~~g-~~l~~al~~a 347 (377)
.|-.|-||..-|-++|+|++| .+.+||+..=
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~it~eEaveil 84 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKITIEEAVEIL 84 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence 588999999999999999998 5788887653
No 119
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=43.69 E-value=2e+02 Score=26.21 Aligned_cols=72 Identities=15% Similarity=0.316 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEcCCCCCC-CChhhhhccCceec-----cCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCC
Q 017101 212 DSVNIQVAKAARSAGVPVIFDAGGMDA-PIPQELLNFIDILS-----PNESELGRLTGMPTDSYEQISEAVVKCHKMGVQ 285 (377)
Q Consensus 212 ~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~ll~~~dvl~-----~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~ 285 (377)
++.+.++++.+++.|..+.++.++... .....+++..|++. .+++....+.|. +.+.+.+.++.+.+.+.+
T Consensus 140 ~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~---~~~~vl~~i~~l~~~~~~ 216 (295)
T TIGR02494 140 PEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTGV---DNEPILENLEALAAAGKN 216 (295)
T ss_pred HHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhCC---ChHHHHHHHHHHHhCCCc
Confidence 345568889999999999999887532 23455666667643 455555666664 235566777777777654
Q ss_pred E
Q 017101 286 Q 286 (377)
Q Consensus 286 ~ 286 (377)
.
T Consensus 217 ~ 217 (295)
T TIGR02494 217 V 217 (295)
T ss_pred E
Confidence 3
No 120
>PF08535 KorB: KorB domain; InterPro: IPR013741 This entry contains several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This domain includes the DNA-binding HTH motif []. ; PDB: 1R71_C.
Probab=43.50 E-value=3.5 Score=30.79 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=18.3
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcch
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPA 44 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (377)
.+|+|||++||.+++-|+-+.. .+..|.
T Consensus 4 ~tq~eIA~~lGks~s~Vs~~l~--Ll~lP~ 31 (93)
T PF08535_consen 4 WTQEEIAKRLGKSRSWVSNHLA--LLDLPE 31 (93)
T ss_dssp --HHHHHHHTT--HHHHHHHHG--GGS--H
T ss_pred CCHHHHHHHHCCCHHHHHHHHH--HHcCCH
Confidence 4799999999999999987776 445555
No 121
>PRK01381 Trp operon repressor; Provisional
Probab=42.16 E-value=12 Score=28.30 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=16.3
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
.+|.|||+.||+++.+|+
T Consensus 56 ~sQREIa~~lGvSiaTIT 73 (99)
T PRK01381 56 LSQREIKQELGVGIATIT 73 (99)
T ss_pred cCHHHHHHHhCCceeeeh
Confidence 589999999999988886
No 122
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=41.48 E-value=3.1e+02 Score=25.84 Aligned_cols=145 Identities=22% Similarity=0.256 Sum_probs=74.4
Q ss_pred CceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc--hhHHH
Q 017101 120 PTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD--EDLEV 197 (377)
Q Consensus 120 ~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~--~~~~~ 197 (377)
++.++|.-| ..|+.+.+.|.+......-+... .. ...-|++..-+.. |.....+ .+...
T Consensus 3 ~VavvGATG--~VG~~~~~~L~e~~f~~~~~~~~--AS---------~rSaG~~~~~f~~------~~~~v~~~~~~~~~ 63 (334)
T COG0136 3 NVAVLGATG--AVGQVLLELLEERHFPFEELVLL--AS---------ARSAGKKYIEFGG------KSIGVPEDAADEFV 63 (334)
T ss_pred EEEEEeccc--hHHHHHHHHHHhcCCCcceEEEE--ec---------ccccCCccccccC------ccccCccccccccc
Confidence 456777766 48999999999975554422221 00 0112333111110 1001111 12234
Q ss_pred HhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceec--cCHHHHhhcc--C----CCCCCH
Q 017101 198 VKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS--PNESELGRLT--G----MPTDSY 269 (377)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~--~N~~E~~~l~--g----~~~~~~ 269 (377)
+++.|+++++. +.+...++...+.+.|+ +++|-++..+. -+.+-++. .|.+.+.... | .+.-+.
T Consensus 64 ~~~~Divf~~a--g~~~s~~~~p~~~~~G~-~VIdnsSa~Rm-----~~DVPLVVPeVN~~~l~~~~~rg~IianpNCst 135 (334)
T COG0136 64 FSDVDIVFFAA--GGSVSKEVEPKAAEAGC-VVIDNSSAFRM-----DPDVPLVVPEVNPEHLIDYQKRGFIIANPNCST 135 (334)
T ss_pred cccCCEEEEeC--chHHHHHHHHHHHHcCC-EEEeCCccccc-----CCCCCEecCCcCHHHHHhhhhCCCEEECCChHH
Confidence 45789988764 44555778888889995 67776654322 12222332 2333322221 1 122233
Q ss_pred HHHHHHHHHHHh-cCCCEEEEee
Q 017101 270 EQISEAVVKCHK-MGVQQVLVKL 291 (377)
Q Consensus 270 ~~~~~~~~~l~~-~g~~~vvvT~ 291 (377)
..+.-+.+-|++ .+++.+.||.
T Consensus 136 ~~l~~aL~PL~~~~~i~~v~VsT 158 (334)
T COG0136 136 IQLVLALKPLHDAFGIKRVVVST 158 (334)
T ss_pred HHHHHHHHHHHhhcCceEEEEEE
Confidence 455556666665 6888888875
No 123
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=41.17 E-value=8.4 Score=27.84 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=20.7
Q ss_pred ccceecchHHHhhcCCCCccceeee
Q 017101 12 CQLKFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
++.+|.++||+.|+++|..|-=||-
T Consensus 17 ~~~~SGe~La~~LgiSRtaVwK~Iq 41 (79)
T COG1654 17 GNFVSGEKLAEELGISRTAVWKHIQ 41 (79)
T ss_pred CCcccHHHHHHHHCccHHHHHHHHH
Confidence 4678999999999999888865554
No 124
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=39.98 E-value=49 Score=29.78 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHhCCCCcccE
Q 017101 131 ANGKLITDALSGCGVRLDYM 150 (377)
Q Consensus 131 ~~G~~i~~~l~~~gVd~~~v 150 (377)
.++.++-+.|.+.|++...+
T Consensus 21 tNa~~la~~L~~~G~~v~~~ 40 (255)
T COG1058 21 TNAAFLADELTELGVDLARI 40 (255)
T ss_pred chHHHHHHHHHhcCceEEEE
Confidence 44555555555555554433
No 125
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=39.04 E-value=7.4 Score=24.92 Aligned_cols=19 Identities=21% Similarity=0.006 Sum_probs=14.3
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
.++.++|+.||+|++||.-
T Consensus 18 ~s~~~ia~~lgvs~~Tv~~ 36 (50)
T PF13384_consen 18 WSIREIAKRLGVSRSTVYR 36 (50)
T ss_dssp --HHHHHHHHTS-HHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 4788999999999999864
No 126
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=39.03 E-value=8.7 Score=35.88 Aligned_cols=20 Identities=20% Similarity=0.051 Sum_probs=17.4
Q ss_pred ceecchHHHhhcCCCCccce
Q 017101 14 LKFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (377)
=.+|+|||++||+||.+|+-
T Consensus 26 gltQ~eIA~~LgiSR~~v~r 45 (321)
T COG2390 26 GLTQSEIAERLGISRATVSR 45 (321)
T ss_pred CCCHHHHHHHhCCCHHHHHH
Confidence 36899999999999988874
No 127
>PF14549 P22_Cro: DNA-binding transcriptional regulator Cro; PDB: 1RZS_A 3BD1_A 3QWS_A 2HIN_B.
Probab=38.79 E-value=6.6 Score=26.71 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=17.0
Q ss_pred cceecchHHHhhcCCCCccce
Q 017101 13 QLKFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~ 33 (377)
-+.+|..+|+.||+++++|+-
T Consensus 8 ~~G~~~~lAkalGVs~~aVs~ 28 (60)
T PF14549_consen 8 YFGGQSKLAKALGVSPQAVSQ 28 (60)
T ss_dssp HHSSHHHHHHHHTS-HHHHHH
T ss_pred HHCCHHHHHHHHCCCHHHHHH
Confidence 467899999999999888874
No 128
>PHA01976 helix-turn-helix protein
Probab=38.71 E-value=8.7 Score=26.34 Aligned_cols=19 Identities=11% Similarity=-0.179 Sum_probs=16.7
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+++++++|+-
T Consensus 16 lt~~~lA~~~gvs~~~v~~ 34 (67)
T PHA01976 16 WSAPELSRRAGVRHSLIYD 34 (67)
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 5899999999999888873
No 129
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=38.63 E-value=8.6 Score=25.14 Aligned_cols=18 Identities=22% Similarity=-0.007 Sum_probs=16.2
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
++|+++|+.+++++++++
T Consensus 16 ltq~~lA~~~gvs~~~vs 33 (58)
T TIGR03070 16 LTQADLADLAGVGLRFIR 33 (58)
T ss_pred CCHHHHHHHhCCCHHHHH
Confidence 579999999999988887
No 130
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=38.46 E-value=1.9e+02 Score=25.56 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=48.9
Q ss_pred EEEEccCC---CHHHHHHHHHHHHhCCCcEEEcCCCCC---CCChhhhhccCceecc-----CHHHHhhccCCCCCCHHH
Q 017101 203 IVLLQREI---PDSVNIQVAKAARSAGVPVIFDAGGMD---APIPQELLNFIDILSP-----NESELGRLTGMPTDSYEQ 271 (377)
Q Consensus 203 ~~~~~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~~~~ll~~~dvl~~-----N~~E~~~l~g~~~~~~~~ 271 (377)
.+.++|.- ..+.+.++++.+++.|..+.++.++.. .+..+.+++.+|.+.+ +++....+.|.+ .+.
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~~---~~~ 149 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVS---NHR 149 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhcccccCCC---hHH
Confidence 45555422 234556888999999999999988753 2344566667776543 333344555542 234
Q ss_pred HHHHHHHHHhcCCCE
Q 017101 272 ISEAVVKCHKMGVQQ 286 (377)
Q Consensus 272 ~~~~~~~l~~~g~~~ 286 (377)
..+..+.+.+.|.+.
T Consensus 150 ~l~~i~~l~~~g~~v 164 (246)
T PRK11145 150 TLEFARYLAKRNQKT 164 (246)
T ss_pred HHHHHHHHHhCCCcE
Confidence 555566666666553
No 131
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=38.42 E-value=51 Score=31.00 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=74.3
Q ss_pred ceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCC------
Q 017101 99 SQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQ------ 172 (377)
Q Consensus 99 ~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~------ 172 (377)
...+.||.+.-.|.-+..-| .+.++|..|.-.....+-+..+-.| -.+. + --.-+++-.+.|+
T Consensus 138 ~~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~~R~~~-----~~I~---~--DdiHlILEYK~Gd~~G~~V 206 (478)
T KOG4184|consen 138 INWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKEIRLAG-----DEIP---N--DDIHLILEYKAGDKWGPYV 206 (478)
T ss_pred hhhhccCCchHHHHHHHhcc-ceeeecccccchhccccchhhhccc-----CcCc---C--CceEEEEEeccCCcccccc
Confidence 34789998887777776555 7789999887433322222222222 1110 0 0111222222232
Q ss_pred -----eeEEEECCCCCCCCCcCcCchhHHHHh--hcCEEEEccCCCHHH---------HHHHHHHHH--hCCCcEEEcCC
Q 017101 173 -----NSIIIVGGTNMSCWPEKFGDEDLEVVK--KAGIVLLQREIPDSV---------NIQVAKAAR--SAGVPVIFDAG 234 (377)
Q Consensus 173 -----~~~~~~~~~~~~~~~~~l~~~~~~~l~--~~~~~~~~~~~~~~~---------~~~~~~~a~--~~g~~v~~D~~ 234 (377)
|-+...+..+.. ...-+.+.+.++ ..|+++++|-...+. ..++.+... -.|+|+-+...
T Consensus 207 AP~anR~I~~~D~~n~~---m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlEla 283 (478)
T KOG4184|consen 207 APRANRYILHNDRNNPH---MRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELA 283 (478)
T ss_pred cccccceeeecCCCChH---HHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHh
Confidence 322222111100 001112223333 468899887332221 111111111 14677777776
Q ss_pred CCCC-----CChhhhhccCceeccCHHHHhhccC
Q 017101 235 GMDA-----PIPQELLNFIDILSPNESELGRLTG 263 (377)
Q Consensus 235 ~~~~-----~~~~~ll~~~dvl~~N~~E~~~l~g 263 (377)
+... .....+++++|-+-+||.|+..|..
T Consensus 284 S~~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 284 SMTNRELMSSIVHQVLPYVDSLGLNEQELLFLTQ 317 (478)
T ss_pred HHHHHHHHHHHHHHhhhhccccCCCHHHHHHHHH
Confidence 5421 2234678999999999999987653
No 132
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=38.29 E-value=2.7e+02 Score=24.26 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEcCCCCC---CCChhhhhccCceecc-----CHHHHhhccCCCCCCHHHHHHHHHHHHhcC
Q 017101 212 DSVNIQVAKAARSAGVPVIFDAGGMD---APIPQELLNFIDILSP-----NESELGRLTGMPTDSYEQISEAVVKCHKMG 283 (377)
Q Consensus 212 ~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~~~~ll~~~dvl~~-----N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g 283 (377)
++...++++.+++.|+.+.+..++.. ......+++..|.+.+ +.+....+.|. +.+...+.++.+.+.|
T Consensus 80 ~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~---~~~~v~~~i~~l~~~g 156 (235)
T TIGR02493 80 PEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEYTDLVLLDIKHFNPEKYKKLTGV---SLQPTLDFAKYLAKRN 156 (235)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCC---CcHHHHHHHHHHHhCC
Confidence 45556888999999999999888742 1234556666665543 44444455553 3356677777777777
Q ss_pred CCE
Q 017101 284 VQQ 286 (377)
Q Consensus 284 ~~~ 286 (377)
.+.
T Consensus 157 ~~~ 159 (235)
T TIGR02493 157 KPI 159 (235)
T ss_pred CcE
Confidence 653
No 133
>PF06322 Phage_NinH: Phage NinH protein; InterPro: IPR010454 This entry is represented by Bacteriophage 933W, NinH. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.88 E-value=9 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=17.4
Q ss_pred ceecchHHHhhcCCCCccc
Q 017101 14 LKFQNILAKQLNKPINTIP 32 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (377)
..+|.|+|+.|++.|.+|.
T Consensus 16 ~GnqtEvaR~l~c~R~TVr 34 (64)
T PF06322_consen 16 YGNQTEVARRLGCNRATVR 34 (64)
T ss_pred hCcHHHHHHHhcccHHHHH
Confidence 4689999999999999997
No 134
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=37.73 E-value=8.1 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.078 Sum_probs=12.9
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
.+..+||+.+|++|+||-
T Consensus 22 ~si~~IA~~~gvsr~Tvy 39 (45)
T PF02796_consen 22 MSIAEIAKQFGVSRSTVY 39 (45)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 466899999999988873
No 135
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=37.60 E-value=3.5e+02 Score=25.35 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=72.3
Q ss_pred EEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEE
Q 017101 125 GQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIV 204 (377)
Q Consensus 125 ~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 204 (377)
|.-| ..|+.+++.|++.+.....+......-...+..+.+ .|+ .+.. +.+.+ ..+++.|++
T Consensus 9 GATg--~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f---~g~-~~~V----------~~l~~---~~f~~vDia 69 (322)
T PRK06901 9 AAEF--ELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF---NNK-AVEQ----------IAPEE---VEWADFNYV 69 (322)
T ss_pred ecCc--HHHHHHHHHHHhcCCchhheeecccccccCCCEEEE---CCE-EEEE----------EECCc---cCcccCCEE
Confidence 5544 589999999999988777555431010122322222 111 1111 22322 235678988
Q ss_pred EEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceec--cCHHHHhhcc--C---CCCCCHHHHHHHHH
Q 017101 205 LLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS--PNESELGRLT--G---MPTDSYEQISEAVV 277 (377)
Q Consensus 205 ~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~--~N~~E~~~l~--g---~~~~~~~~~~~~~~ 277 (377)
++ . ..+...+....+.+.|+ +++|.++.++. -+.+-++. .|.+.+..+- + .+..+.-.+.-+.+
T Consensus 70 ~f-a--g~~~s~~~ap~a~~aG~-~VIDnSsa~Rm-----d~dVPLVVPEVN~e~l~~~~~~~IIanPNCsTi~l~~aL~ 140 (322)
T PRK06901 70 FF-A--GKMAQAEHLAQAAEAGC-IVIDLYGICAA-----LANVPVVVPSVNDEQLAELRQRNIVSLPDPQVSQLALALA 140 (322)
T ss_pred EE-c--CHHHHHHHHHHHHHCCC-EEEECChHhhC-----CCCCCeecccCCHHHHhcCcCCCEEECCcHHHHHHHHHHH
Confidence 87 3 45566777778888887 66777654321 12233333 2333332221 1 11111223344455
Q ss_pred HHH-hcCCCEEEEee
Q 017101 278 KCH-KMGVQQVLVKL 291 (377)
Q Consensus 278 ~l~-~~g~~~vvvT~ 291 (377)
-+. ..+++.+++|.
T Consensus 141 pL~~~~~l~rv~VsT 155 (322)
T PRK06901 141 PFLQEQPLSQIFVTS 155 (322)
T ss_pred HHHHhcCCcEEEEEe
Confidence 566 46899888875
No 136
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=37.55 E-value=6 Score=26.18 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=20.0
Q ss_pred CcccceecchHHHhhcCCCCccceee
Q 017101 10 NHCQLKFQNILAKQLNKPINTIPFHF 35 (377)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (377)
|.-.=++-+|||+.||++.++++-|.
T Consensus 19 d~PR~~tl~elA~~lgis~st~~~~L 44 (53)
T PF04967_consen 19 DVPRRITLEELAEELGISKSTVSEHL 44 (53)
T ss_pred CCCCcCCHHHHHHHhCCCHHHHHHHH
Confidence 34445678999999999988887544
No 137
>PHA00542 putative Cro-like protein
Probab=37.29 E-value=9.1 Score=27.80 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=18.7
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
++|.++|+.+++++++|+-...
T Consensus 32 lTq~elA~~lgIs~~tIsr~e~ 53 (82)
T PHA00542 32 WSQEQIADATDVSQPTICRIYS 53 (82)
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 6999999999999999985443
No 138
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=37.14 E-value=13 Score=24.40 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.2
Q ss_pred ecchHHHhhcCCCCccc
Q 017101 16 FQNILAKQLNKPINTIP 32 (377)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (377)
+|.+||+.+|+++++|+
T Consensus 24 s~~~ia~~fgv~~sTv~ 40 (53)
T PF04218_consen 24 SKRDIAREFGVSRSTVS 40 (53)
T ss_dssp -HHHHHHHHT--CCHHH
T ss_pred CHHHHHHHhCCCHHHHH
Confidence 78999999999999997
No 139
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=36.49 E-value=46 Score=23.56 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCceEEEEecC------CccHHHHHHHHHhCCCCcc
Q 017101 107 GANQAACGAKLSHPTYFVGQVGE------DANGKLITDALSGCGVRLD 148 (377)
Q Consensus 107 ~~NvA~~la~LG~~v~li~~vG~------D~~G~~i~~~l~~~gVd~~ 148 (377)
|.=.|..++++|.+++++..-.. ....+.+.+.|++.||+..
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 56778899999999999876432 1346778889999988753
No 140
>PTZ00293 thymidine kinase; Provisional
Probab=36.29 E-value=2.9e+02 Score=24.09 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=32.5
Q ss_pred HHHhhcCEEEEccC-CCHHHHHHHHHHHHhCCCcEEEcC-----CCCCCCChhhhhccCcee
Q 017101 196 EVVKKAGIVLLQRE-IPDSVNIQVAKAARSAGVPVIFDA-----GGMDAPIPQELLNFIDIL 251 (377)
Q Consensus 196 ~~l~~~~~~~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~-----~~~~~~~~~~ll~~~dvl 251 (377)
+.+...|++.++.. +..+ +.++++.+...|++|++-. ..........|++.+|-+
T Consensus 73 ~~~~~~dvI~IDEaQFf~~-i~~~~~~l~~~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V 133 (211)
T PTZ00293 73 ETAKNYDVIAIDEGQFFPD-LVEFSEAAANLGKIVIVAALDGTFQRKPFGQILNLIPLAERV 133 (211)
T ss_pred HhccCCCEEEEEchHhhHh-HHHHHHHHHHCCCeEEEEecCcccccCcCccHHHHHHhhCEE
Confidence 34567899998742 2222 4566777778899887632 222223345566666654
No 141
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=36.10 E-value=10 Score=28.87 Aligned_cols=21 Identities=33% Similarity=0.159 Sum_probs=17.7
Q ss_pred eecchHHHhhcCCCCccceee
Q 017101 15 KFQNILAKQLNKPINTIPFHF 35 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (377)
++|.++|+.|+.+|++|+-.+
T Consensus 24 lt~~~lA~~lgV~r~~is~li 44 (104)
T COG3093 24 LTQTELAEALGVTRNTISELI 44 (104)
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 689999999999999987433
No 142
>COG5606 Uncharacterized conserved small protein [Function unknown]
Probab=35.89 E-value=16 Score=26.65 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=17.1
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
.+|.++|+-|+++|++++.
T Consensus 42 l~Q~qiae~lgV~qprvS~ 60 (91)
T COG5606 42 LSQAQIAELLGVTQPRVSD 60 (91)
T ss_pred HHHHHHHHHhCCCCchHHH
Confidence 4689999999999999993
No 143
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=35.61 E-value=26 Score=34.29 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=23.5
Q ss_pred eeEEeccCCCCcccCccCchHHHHHHHHHHHh
Q 017101 304 KPIKQSIIPAARVIDTTGAGDTFTASFAVGFV 335 (377)
Q Consensus 304 ~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~ 335 (377)
....+|..-..+++.|+|-||++.||-..+++
T Consensus 416 ~~~~iPt~~v~~P~sTVGlGDtisa~af~~~l 447 (453)
T PRK14039 416 SVCILPTLVSKSPVTTVGLGDTLTAGTFLRLL 447 (453)
T ss_pred eEEEechhhccCCccccccCccccHHHHHHHH
Confidence 34455664455789999999999988776654
No 144
>COG1356 tfx Transcriptional regulator [DNA replication, recombination and repair]
Probab=35.56 E-value=16 Score=28.74 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCc--cHHHHHHHHHhCCCCccc
Q 017101 107 GANQAACGAKLSHPTYFVGQVGEDA--NGKLITDALSGCGVRLDY 149 (377)
Q Consensus 107 ~~NvA~~la~LG~~v~li~~vG~D~--~G~~i~~~l~~~gVd~~~ 149 (377)
+.|+..-..++-.++.+.-.-|+|. .-+.+...-.+.||.+-|
T Consensus 54 arnTL~l~~~i~spv~i~v~aGe~~dei~e~l~k~adeagikV~~ 98 (143)
T COG1356 54 ARNTLLLWEQINSPVSITVKAGEDIDEIPERLFKEADEAGIKVPY 98 (143)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCcHHHHHHHHHHhcccccccccc
Confidence 6778887888888888888888762 223333333445555443
No 145
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.48 E-value=93 Score=23.13 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=29.8
Q ss_pred HHHhhcCEEEEc-cCCCHHHHHHHHHHHHhCCCcEEEcC
Q 017101 196 EVVKKAGIVLLQ-REIPDSVNIQVAKAARSAGVPVIFDA 233 (377)
Q Consensus 196 ~~l~~~~~~~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (377)
..+..+|++++. +.....+...+-+.|++.++|+++--
T Consensus 44 ~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 44 SKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 567888987654 45566778888899999999988754
No 146
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=34.91 E-value=1e+02 Score=21.11 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017101 324 DTFTASFAVGFVEGKSREECLRFAAA 349 (377)
Q Consensus 324 DaF~ag~l~~l~~g~~l~~al~~a~~ 349 (377)
|+|.+|+.+++. +.+..+.+..+..
T Consensus 4 Daf~vg~~~g~~-~~~~~~~~~~~~~ 28 (67)
T PF02659_consen 4 DAFAVGISYGLR-GISRRIILLIALI 28 (67)
T ss_pred HHHHHHHHHHHH-cCChHHHHHHHHH
Confidence 999999999988 4554444444333
No 147
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=34.48 E-value=4.1e+02 Score=25.16 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=51.6
Q ss_pred CCCceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHH
Q 017101 118 SHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEV 197 (377)
Q Consensus 118 G~~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (377)
..++.++|.-| ..|..+.+.|.+.+-....+...- ..+..+..+.. .| .... ...+. .+.
T Consensus 7 ~~kVaVvGAtG--~vG~eLlrlL~~~~hP~~~l~~la-s~rsaGk~~~~---~~-~~~~----------v~~~~---~~~ 66 (344)
T PLN02383 7 GPSVAIVGVTG--AVGQEFLSVLTDRDFPYSSLKMLA-SARSAGKKVTF---EG-RDYT----------VEELT---EDS 66 (344)
T ss_pred CCeEEEEcCCC--hHHHHHHHHHHhCCCCcceEEEEE-ccCCCCCeeee---cC-ceeE----------EEeCC---HHH
Confidence 34566666655 489999999987544322222110 11122222211 11 1111 01122 134
Q ss_pred HhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCC
Q 017101 198 VKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD 237 (377)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 237 (377)
+..+|++++.. +.+...++...+.+.|+ +++|.++..
T Consensus 67 ~~~~D~vf~a~--p~~~s~~~~~~~~~~g~-~VIDlS~~f 103 (344)
T PLN02383 67 FDGVDIALFSA--GGSISKKFGPIAVDKGA-VVVDNSSAF 103 (344)
T ss_pred HcCCCEEEECC--CcHHHHHHHHHHHhCCC-EEEECCchh
Confidence 56789988754 55566677777767776 689988653
No 148
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=34.45 E-value=11 Score=26.30 Aligned_cols=19 Identities=11% Similarity=-0.094 Sum_probs=16.6
Q ss_pred ecchHHHhhcCCCCcccee
Q 017101 16 FQNILAKQLNKPINTIPFH 34 (377)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~ 34 (377)
++.|||+.+|+++++|+-.
T Consensus 2 t~~~iA~~~gvS~~TVSr~ 20 (70)
T smart00354 2 TIKDVARLAGVSKATVSRV 20 (70)
T ss_pred CHHHHHHHHCCCHHHHHHH
Confidence 6789999999999999843
No 149
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=34.45 E-value=77 Score=25.35 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=26.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHhCCCcEEEcC
Q 017101 203 IVLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (377)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (377)
+++++.++|.+.+.++++.+.+.|+++++--
T Consensus 2 ~vFvS~SMP~~~Lk~l~~~a~~~g~~~VlRG 32 (130)
T TIGR02742 2 MVFVSFSMPEPLLKQLLDQAEALGAPLVIRG 32 (130)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHhCCeEEEeC
Confidence 4567788999999999999999999988854
No 150
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=34.18 E-value=9.2 Score=29.40 Aligned_cols=31 Identities=3% Similarity=-0.155 Sum_probs=27.2
Q ss_pred ceecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 14 LKFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
-++|.||++.+++++++|+..+. .|...|++
T Consensus 43 ~~t~~eL~~~l~~~~stvs~~i~--~Le~kg~I 73 (109)
T TIGR01889 43 KLTLKEIIKEILIKQSALVKIIK--KLSKKGYL 73 (109)
T ss_pred cCcHHHHHHHHCCCHHHHHHHHH--HHHHCCCE
Confidence 47899999999999999987777 88888866
No 151
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.11 E-value=2.1e+02 Score=28.07 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=29.2
Q ss_pred eecCCChHHHHHHHHHHcCCCceEEEEecCCccH---HHHHHHHHhCCCCcccE
Q 017101 100 QTLAGGKGANQAACGAKLSHPTYFVGQVGEDANG---KLITDALSGCGVRLDYM 150 (377)
Q Consensus 100 ~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G---~~i~~~l~~~gVd~~~v 150 (377)
....+|.+++.+..++-++..-.++. ..+.++ ..+...+.+.|+++.++
T Consensus 80 v~~~SG~aAi~~al~all~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~v 131 (432)
T PRK06702 80 VATASGQAAIMLAVLNICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFF 131 (432)
T ss_pred EEECCHHHHHHHHHHHhcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEE
Confidence 45788888877766665653223332 233454 44445578888876654
No 152
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=34.06 E-value=67 Score=24.90 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=25.6
Q ss_pred EEEccCCCHHHHHHHHHHHHhCCCcEEEcC
Q 017101 204 VLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (377)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (377)
++++.++|++.+..+++.+.+.|+++++--
T Consensus 2 iFvS~SMP~~~L~~l~~~a~~~~~~~V~RG 31 (113)
T PF09673_consen 2 IFVSFSMPDASLRNLLKQAERAGVVVVFRG 31 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHhCCcEEEEEC
Confidence 567778899999999999999999888854
No 153
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=33.78 E-value=11 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=18.1
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
+++.|+|+.++++++++.-++.
T Consensus 9 ~s~~~la~~l~~s~~tv~~~l~ 30 (48)
T smart00419 9 LTRQEIAELLGLTRETVSRTLK 30 (48)
T ss_pred cCHHHHHHHHCCCHHHHHHHHH
Confidence 6789999999999888875444
No 154
>PRK10072 putative transcriptional regulator; Provisional
Probab=33.26 E-value=12 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=21.1
Q ss_pred CCCCcccc-----eecchHHHhhcCCCCccce
Q 017101 7 SPSNHCQL-----KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 7 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 33 (377)
++.++.++ ++|.|+|+.+|++.++|+-
T Consensus 34 ~~~eik~LR~~~glTQ~elA~~lGvS~~TVs~ 65 (96)
T PRK10072 34 SFTEFEQLRKGTGLKIDDFARVLGVSVAMVKE 65 (96)
T ss_pred ChHHHHHHHHHcCCCHHHHHHHhCCCHHHHHH
Confidence 44455544 7899999999999888873
No 155
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=32.94 E-value=70 Score=23.66 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 104 GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
+|.+...+..+...|+++.+.+.+|.. ..+.|++.||..
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~-----a~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGP-----AAAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCcc-----HHHHHHHcCCEE
Confidence 466788999999999999999988764 567888889875
No 156
>PF02001 DUF134: Protein of unknown function DUF134; InterPro: IPR002852 The bacterial and archaeal proteins in this family have no known function.
Probab=32.85 E-value=13 Score=28.59 Aligned_cols=20 Identities=15% Similarity=-0.057 Sum_probs=17.7
Q ss_pred eecchHHHhhcCCCCcccee
Q 017101 15 KFQNILAKQLNKPINTIPFH 34 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (377)
.+|+|.|+++|+||.|+...
T Consensus 58 l~QeeaA~~MgVSR~T~~ri 77 (106)
T PF02001_consen 58 LSQEEAAERMGVSRPTFQRI 77 (106)
T ss_pred CCHHHHHHHcCCcHHHHHHH
Confidence 58999999999999998753
No 157
>PF13730 HTH_36: Helix-turn-helix domain
Probab=32.64 E-value=4.1 Score=26.81 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=17.9
Q ss_pred ecchHHHhhcCCCCccceeee
Q 017101 16 FQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~ 36 (377)
|++.||+.++++|++|.-++.
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~ 47 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIK 47 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 899999999999999865544
No 158
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=32.36 E-value=12 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.1
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
.++.|+|+.+|+|+.+|.
T Consensus 21 ~t~~eIa~~lg~s~~~V~ 38 (50)
T PF04545_consen 21 LTLEEIAERLGISRSTVR 38 (50)
T ss_dssp -SHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHCCcHHHHH
Confidence 478999999999988775
No 159
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=31.72 E-value=2e+02 Score=25.99 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHH------hhcc--CCC------CC-CHHHHHHHH
Q 017101 212 DSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESEL------GRLT--GMP------TD-SYEQISEAV 276 (377)
Q Consensus 212 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~------~~l~--g~~------~~-~~~~~~~~~ 276 (377)
.+-+..+.+.+++.|++++-++-.. ...+.+.+.+|++++--.+. +.+. |.+ .. +.+++..++
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~--~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Av 152 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDP--RDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAA 152 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCCh--hhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHH
Confidence 3445567778889999998887542 33455566788876544333 2222 211 12 678899999
Q ss_pred HHHHhcCCCEEEEe-eCC
Q 017101 277 VKCHKMGVQQVLVK-LGA 293 (377)
Q Consensus 277 ~~l~~~g~~~vvvT-~G~ 293 (377)
..+.+.|.+.++++ +|-
T Consensus 153 e~i~~~Gn~~i~l~~rG~ 170 (260)
T TIGR01361 153 EYILSSGNGNVILCERGI 170 (260)
T ss_pred HHHHHcCCCcEEEEECCC
Confidence 99988888766654 344
No 160
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=31.20 E-value=3.6e+02 Score=23.57 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=24.4
Q ss_pred HHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEE
Q 017101 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIF 231 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~ 231 (377)
+.+..+|+++.....+ .....+.+.++++++|++.
T Consensus 107 ~~~~~~DvVi~~~d~~-~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 107 ELIAGYDLVLDCTDNF-ATRYLINDACVKLGKPLVS 141 (228)
T ss_pred HHHhCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEE
Confidence 4567889888765433 3455677788889988755
No 161
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=31.10 E-value=14 Score=27.30 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=17.2
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+++.|||+.++++|+||.-
T Consensus 51 ~S~~eIA~~LgISrsTIyR 69 (88)
T TIGR02531 51 KTYSDIEAETGASTATISR 69 (88)
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5889999999999999974
No 162
>PRK05967 cystathionine beta-lyase; Provisional
Probab=30.70 E-value=3.8e+02 Score=25.88 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCCcEEEcCC
Q 017101 214 VNIQVAKAARSAGVPVIFDAG 234 (377)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~ 234 (377)
-+.++.+.|+++|+.+++|-.
T Consensus 167 dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 167 DIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred HHHHHHHHHHHhCCEEEEECC
Confidence 356778888888888888865
No 163
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=30.69 E-value=11 Score=22.08 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=14.1
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+++.|||..+|.+|-+|+-
T Consensus 3 mtr~diA~~lG~t~ETVSR 21 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSR 21 (32)
T ss_dssp --HHHHHHHHTS-HHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHH
Confidence 4678999999999888874
No 164
>PRK07050 cystathionine beta-lyase; Provisional
Probab=30.53 E-value=4.6e+02 Score=25.21 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCCcEEEcCCC
Q 017101 214 VNIQVAKAARSAGVPVIFDAGG 235 (377)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~~ 235 (377)
-+.++.+.|+++|+.+++|-..
T Consensus 168 di~~I~~ia~~~gi~livD~a~ 189 (394)
T PRK07050 168 DVPAITAAARARGVVTAIDNTY 189 (394)
T ss_pred hHHHHHHHHHHcCCEEEEECCc
Confidence 3567778888888888888753
No 165
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=30.50 E-value=47 Score=26.35 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=30.1
Q ss_pred CccCchHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHhc
Q 017101 318 DTTGAGDTFTAS-FAVGFVEGKSREECLRFAAAAASLCVQ 356 (377)
Q Consensus 318 dttGAGDaF~ag-~l~~l~~g~~l~~al~~a~~aAa~~~~ 356 (377)
-|.|||-+..+. ++..|.+|+++++++++-|.--|..+.
T Consensus 85 KTFGCGSAIASSS~aTewvkgkt~dea~kIkNteIAKeL~ 124 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEIAKELS 124 (157)
T ss_pred eecccchHhhhhHHHHHHHccccHHHHHhcccHHHHHhcc
Confidence 477999987765 556699999999999988766555443
No 166
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=30.34 E-value=2e+02 Score=24.30 Aligned_cols=79 Identities=15% Similarity=0.058 Sum_probs=50.8
Q ss_pred hcCEEEEccCC-CHHHHHHHHHHHHhCCCcEEEcCCCCCCC---ChhhhhccCceeccCHHHHhh---ccCCCCCCHHHH
Q 017101 200 KAGIVLLQREI-PDSVNIQVAKAARSAGVPVIFDAGGMDAP---IPQELLNFIDILSPNESELGR---LTGMPTDSYEQI 272 (377)
Q Consensus 200 ~~~~~~~~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~~~~---~~~~ll~~~dvl~~N~~E~~~---l~g~~~~~~~~~ 272 (377)
+++.+-..|.. +.+....+-+.++.+|+.|+.||...... .+...++.+-..+....++.. -.|....+++++
T Consensus 22 d~~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~GekIRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~As~e~I 101 (174)
T TIGR00334 22 DVDVIETNGSALKDETINLIKKAQKKQGVIILTDPDFPGEKIRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEASVEAI 101 (174)
T ss_pred CceEEEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCchHHHHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCCCHHHH
Confidence 46777777754 66666666666778899999999654322 234445667777788777642 245555566666
Q ss_pred HHHHHH
Q 017101 273 SEAVVK 278 (377)
Q Consensus 273 ~~~~~~ 278 (377)
.++...
T Consensus 102 ~~AL~~ 107 (174)
T TIGR00334 102 IAALEN 107 (174)
T ss_pred HHHHHH
Confidence 666543
No 167
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=30.24 E-value=12 Score=23.13 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=12.6
Q ss_pred ecchHHHhhcCCCCccc
Q 017101 16 FQNILAKQLNKPINTIP 32 (377)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (377)
++.+.|+.||++|+++-
T Consensus 20 n~~~aA~~Lgisr~tL~ 36 (42)
T PF02954_consen 20 NVSKAARLLGISRRTLY 36 (42)
T ss_dssp -HHHHHHHHTS-HHHHH
T ss_pred CHHHHHHHHCCCHHHHH
Confidence 67899999999987753
No 168
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=30.15 E-value=11 Score=25.37 Aligned_cols=19 Identities=21% Similarity=0.079 Sum_probs=13.4
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.+||+..|++++++.-
T Consensus 11 it~~~La~~~gis~~tl~~ 29 (63)
T PF13443_consen 11 ITQKDLARKTGISRSTLSR 29 (63)
T ss_dssp --HHHHHHHHT--HHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 4899999999999988874
No 169
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=30.11 E-value=15 Score=27.39 Aligned_cols=19 Identities=16% Similarity=-0.132 Sum_probs=16.7
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|+|.|.++++||.++..
T Consensus 50 l~QeeAA~rMgISr~Tfwr 68 (99)
T COG1342 50 LTQEEAALRMGISRQTFWR 68 (99)
T ss_pred ccHHHHHHHhcccHHHHHH
Confidence 5899999999999988863
No 170
>COG1159 Era GTPase [General function prediction only]
Probab=29.64 E-value=4.6e+02 Score=24.27 Aligned_cols=112 Identities=15% Similarity=0.209 Sum_probs=59.5
Q ss_pred CCCceEEEEecCCccHHH-HHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCc----Cc
Q 017101 118 SHPTYFVGQVGEDANGKL-ITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKF----GD 192 (377)
Q Consensus 118 G~~v~li~~vG~D~~G~~-i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l----~~ 192 (377)
+.++.|++.+|.-..|+. +.+.|-...|.. +... ...|+..+.-+..+++.++++.+.+........+ ..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisI--vS~k---~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~ 77 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISI--VSPK---PQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNK 77 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEe--ecCC---cchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHH
Confidence 457889999998878865 677776655432 2222 2234444433333446666655444333211122 22
Q ss_pred hhHHHHhhcCEEEE--ccCC-CHHHHHHHHHHHHhCCCcEEEcCC
Q 017101 193 EDLEVVKKAGIVLL--QREI-PDSVNIQVAKAARSAGVPVIFDAG 234 (377)
Q Consensus 193 ~~~~~l~~~~~~~~--~~~~-~~~~~~~~~~~a~~~g~~v~~D~~ 234 (377)
.....+.++|++++ +..- .......+++..++.+.|+++=.+
T Consensus 78 ~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iN 122 (298)
T COG1159 78 AARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVN 122 (298)
T ss_pred HHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEE
Confidence 33457788898764 3221 122234556666665567666443
No 171
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=29.56 E-value=17 Score=27.22 Aligned_cols=34 Identities=3% Similarity=-0.091 Sum_probs=26.3
Q ss_pred cccceecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 11 HCQLKFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
...-++|.|||+.++.+|.+|+-.+. .+...|.+
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~--~Le~~GlI 77 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIK--SLARRRII 77 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHH--HHHHCCCe
Confidence 55678999999999999999876554 56666644
No 172
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.49 E-value=28 Score=29.63 Aligned_cols=42 Identities=33% Similarity=0.598 Sum_probs=36.3
Q ss_pred cCchHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhcccCCC
Q 017101 320 TGAGDTFTASFAVG-FVEGKSREECLRFAAAAASLCVQVKGAI 361 (377)
Q Consensus 320 tGAGDaF~ag~l~~-l~~g~~l~~al~~a~~aAa~~~~~~G~~ 361 (377)
-|.|-+|+=||+-. |-.|+++|||.+|-..|-++++.+-|..
T Consensus 147 gGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsS 189 (224)
T KOG0174|consen 147 GGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSS 189 (224)
T ss_pred ccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 48999999888855 6779999999999999999999988764
No 173
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=29.45 E-value=3.6e+02 Score=23.05 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=27.0
Q ss_pred HHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEc
Q 017101 195 LEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD 232 (377)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D 232 (377)
.+.++.+|+++.... +......+-+.++++++|++.-
T Consensus 108 ~~~~~~~dvVi~~~d-~~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 108 EEYLQKFTLVIATEE-NYERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 356778898876543 4556667888999999987664
No 174
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=29.27 E-value=15 Score=25.91 Aligned_cols=19 Identities=26% Similarity=0.111 Sum_probs=16.9
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+|+++.+|+-
T Consensus 19 ~t~~~lA~~~gis~~tis~ 37 (78)
T TIGR02607 19 LSIRALAKALGVSRSTLSR 37 (78)
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 5899999999999888884
No 175
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=29.17 E-value=5e+02 Score=24.62 Aligned_cols=145 Identities=20% Similarity=0.283 Sum_probs=74.3
Q ss_pred CCceEEEEecCCccHHHHHHHHHh-CCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHH
Q 017101 119 HPTYFVGQVGEDANGKLITDALSG-CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEV 197 (377)
Q Consensus 119 ~~v~li~~vG~D~~G~~i~~~l~~-~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (377)
.++.++|.-| ..|..+.+.|.+ ..++...+...- .....|..+.+. +. ...+ ..+++ +.
T Consensus 6 ~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~a-S~~saGk~~~~~---~~-~l~v----------~~~~~---~~ 65 (347)
T PRK06728 6 YHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLS-SKRSAGKTVQFK---GR-EIII----------QEAKI---NS 65 (347)
T ss_pred CEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEE-CcccCCCCeeeC---Cc-ceEE----------EeCCH---HH
Confidence 3555666655 589999999994 666644332220 222223322111 11 1111 11222 33
Q ss_pred HhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceec--cCHHHHhh---ccCCCCCCHHHH
Q 017101 198 VKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS--PNESELGR---LTGMPTDSYEQI 272 (377)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~--~N~~E~~~---l~g~~~~~~~~~ 272 (377)
+.+.|++++.. +.+...++...+.+.|+ +++|.++..+.. +.+.++. .|.+++.. +.-.+.-....+
T Consensus 66 ~~~~Divf~a~--~~~~s~~~~~~~~~~G~-~VID~Ss~fR~~-----~~vplvvPEvN~e~i~~~~~iIanPnC~tt~~ 137 (347)
T PRK06728 66 FEGVDIAFFSA--GGEVSRQFVNQAVSSGA-IVIDNTSEYRMA-----HDVPLVVPEVNAHTLKEHKGIIAVPNCSALQM 137 (347)
T ss_pred hcCCCEEEECC--ChHHHHHHHHHHHHCCC-EEEECchhhcCC-----CCCCeEeCCcCHHHHhccCCEEECCCCHHHHH
Confidence 56789888754 56667777777777775 788988654321 1122332 25544432 221222233344
Q ss_pred HHHHHHHHh-cCCCEEEEee
Q 017101 273 SEAVVKCHK-MGVQQVLVKL 291 (377)
Q Consensus 273 ~~~~~~l~~-~g~~~vvvT~ 291 (377)
.-+.+-+.+ .+++.|+|+.
T Consensus 138 ~laL~PL~~~~~i~~v~V~t 157 (347)
T PRK06728 138 VTALQPIRKVFGLERIIVST 157 (347)
T ss_pred HHHHHHHHHcCCccEEEEEE
Confidence 444555554 4678777764
No 176
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=28.75 E-value=13 Score=25.28 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.2
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
+||.++|++++++.++++
T Consensus 15 ls~~~lA~~~g~s~s~v~ 32 (64)
T PF13560_consen 15 LSQAQLADRLGVSQSTVS 32 (64)
T ss_dssp S-HHHHHHHHTS-HHHHH
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 589999999999988777
No 177
>PF06056 Terminase_5: Putative ATPase subunit of terminase (gpP-like); InterPro: IPR010332 This family of proteins are annotated as ATPase subunits of phage terminase after []. Terminases are viral proteins that are involved in packaging viral DNA into the capsid.; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=28.36 E-value=21 Score=24.09 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.2
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
-++.|||+.||.++++|.
T Consensus 14 ~~~~eIA~~Lg~~~~TV~ 31 (58)
T PF06056_consen 14 WSIKEIAEELGVPRSTVY 31 (58)
T ss_pred CCHHHHHHHHCCChHHHH
Confidence 357899999999988875
No 178
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=28.23 E-value=19 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.019 Sum_probs=19.1
Q ss_pred cccceecchHHHhhcCCCCccc
Q 017101 11 HCQLKFQNILAKQLNKPINTIP 32 (377)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~ 32 (377)
+..+-|+.|.|+.|++++++|.
T Consensus 13 i~~F~Si~eAa~~l~i~~~~I~ 34 (37)
T PF07453_consen 13 IKSFDSIREAARYLGISHSTIS 34 (37)
T ss_pred EEEEcCHHHHHHHhCCCHHHHH
Confidence 5677889999999999988876
No 179
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=28.20 E-value=5.6 Score=27.12 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=21.8
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcch
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPA 44 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (377)
+++.|||+.++++++++.-++. .+...|
T Consensus 26 ~s~~ela~~~g~s~~tv~r~l~--~L~~~g 53 (67)
T cd00092 26 LTRQEIADYLGLTRETVSRTLK--ELEEEG 53 (67)
T ss_pred cCHHHHHHHHCCCHHHHHHHHH--HHHHCC
Confidence 6899999999999999876555 444444
No 180
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=28.17 E-value=5.1e+02 Score=24.37 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=47.8
Q ss_pred HHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceec--cCHHHHhh-----ccCCCCCCH
Q 017101 197 VVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS--PNESELGR-----LTGMPTDSY 269 (377)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~--~N~~E~~~-----l~g~~~~~~ 269 (377)
.+...|++++.. +.....++...+.+.|+ +++|.++..+... .+.++. .|.+++.. +...+.-..
T Consensus 58 ~~~~~D~v~~a~--g~~~s~~~a~~~~~~G~-~VID~ss~~R~~~-----~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 58 SFEGIDIALFSA--GGSVSKEFAPKAAKCGA-IVIDNTSAFRMDP-----DVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred HhcCCCEEEECC--CHHHHHHHHHHHHHCCC-EEEECCHHHhCCC-----CCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 457789888864 45556667777777787 6899875322110 011222 36666543 222222233
Q ss_pred HHHHHHHHHHHh-cCCCEEEEee
Q 017101 270 EQISEAVVKCHK-MGVQQVLVKL 291 (377)
Q Consensus 270 ~~~~~~~~~l~~-~g~~~vvvT~ 291 (377)
..+.-+.+-|.+ .+++.+++|.
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt 152 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVST 152 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEe
Confidence 344445555554 4678777764
No 181
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=26.84 E-value=2.6e+02 Score=20.50 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 323 GDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 323 GDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
.|...-++++-++...++.+...+|...-..--+..|...+.|+.+.+..++..
T Consensus 22 ~~iL~i~~~a~l~G~~~~~~i~~~~~~~~~~l~~~l~~~~~~PS~~Ti~rvl~~ 75 (90)
T PF13808_consen 22 ADILLIALCAVLCGADSWREIAEWARAHEEWLRKRLGLPRGVPSHDTIRRVLSR 75 (90)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHhHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 466777777777777899999999999998888888887789999999888753
No 182
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.81 E-value=65 Score=28.93 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCEEEEeeCCCCeEEE
Q 017101 271 QISEAVVKCHKMGVQQVLVKLGAKGSALF 299 (377)
Q Consensus 271 ~~~~~~~~l~~~g~~~vvvT~G~~G~~~~ 299 (377)
+..++++.+.+.+.+.|++|.|.+..-.+
T Consensus 117 ~~~eA~~~l~~~~~~~iflttGsk~L~~f 145 (249)
T PF02571_consen 117 SYEEAAELLKELGGGRIFLTTGSKNLPPF 145 (249)
T ss_pred CHHHHHHHHhhcCCCCEEEeCchhhHHHH
Confidence 45566666666666889999999876433
No 183
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=26.64 E-value=4.9 Score=26.81 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=23.0
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
+++.|||+.+++++++++..+. .|...|++
T Consensus 18 ~~~~~la~~~~~~~~~~t~~i~--~L~~~g~I 47 (59)
T PF01047_consen 18 ITQSELAEKLGISRSTVTRIIK--RLEKKGLI 47 (59)
T ss_dssp EEHHHHHHHHTS-HHHHHHHHH--HHHHTTSE
T ss_pred CCHHHHHHHHCCChhHHHHHHH--HHHHCCCE
Confidence 6889999999999988876555 66666644
No 184
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=26.51 E-value=3.3e+02 Score=21.58 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEE
Q 017101 195 LEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIF 231 (377)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~ 231 (377)
.+.+..+|+++..... ......+.+.++++++|++.
T Consensus 84 ~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~ 119 (143)
T cd01483 84 DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVID 119 (143)
T ss_pred HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 4567788988776544 34456778889999987654
No 185
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=26.39 E-value=44 Score=24.92 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHcCCCceEEEEecCC-ccHHHHHHHHHhCCC
Q 017101 105 GKGANQAACGAKLSHPTYFVGQVGED-ANGKLITDALSGCGV 145 (377)
Q Consensus 105 G~~~NvA~~la~LG~~v~li~~vG~D-~~G~~i~~~l~~~gV 145 (377)
|++-|+|...-.-|..+.++--+|.| ..|+...++-.+.||
T Consensus 10 GKGq~Va~GveaAGG~aivipG~~ADmklGdvM~~e~Ad~Gi 51 (115)
T PF14272_consen 10 GKGQKVAKGVEAAGGKAIVIPGVGADMKLGDVMKKENADFGI 51 (115)
T ss_pred cCcchHhhHHHhcCCeEEEecCccccchHHHHHHhhCCCcce
Confidence 67899999999999999999999988 667666554444444
No 186
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=26.26 E-value=15 Score=24.76 Aligned_cols=19 Identities=32% Similarity=0.165 Sum_probs=14.1
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++++-
T Consensus 13 lt~~~~a~~~~i~~~~i~~ 31 (64)
T PF12844_consen 13 LTQKDLAEKLGISRSTISK 31 (64)
T ss_dssp --HHHHHHHHTS-HHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888773
No 187
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=26.02 E-value=17 Score=25.54 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=18.1
Q ss_pred ceecchHHHhhcCCCCccceee
Q 017101 14 LKFQNILAKQLNKPINTIPFHF 35 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (377)
-++|++||..+|.+|.+++-.+
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l 49 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRIL 49 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHH
Confidence 3689999999999988887433
No 188
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=25.98 E-value=4.2e+02 Score=22.65 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=25.8
Q ss_pred HHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEc
Q 017101 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD 232 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D 232 (377)
+.++..|+++.... +......+-+.++++++|++.-
T Consensus 106 ~~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 106 EFFSQFDVVVATEL-SRAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 45678888876543 4556677888899999987543
No 189
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.88 E-value=1.1e+02 Score=25.94 Aligned_cols=55 Identities=31% Similarity=0.265 Sum_probs=35.1
Q ss_pred hhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEc-CCCCCCCChhhhhc-cCceecc
Q 017101 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD-AGGMDAPIPQELLN-FIDILSP 253 (377)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D-~~~~~~~~~~~ll~-~~dvl~~ 253 (377)
..++++.+....+.+...++++.++++|+++.++ ++..........+. .+|++..
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 3578888776655555678889999999999887 44322111112333 6787665
No 190
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=25.70 E-value=20 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=22.2
Q ss_pred cceecchHHHhhcCCCCccceeeeeccCCcch
Q 017101 13 QLKFQNILAKQLNKPINTIPFHFTITNRQFPA 44 (377)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (377)
++-++.|+|+.++++|+++.-++. .+...|
T Consensus 19 ~l~s~~~la~~~~vs~~tv~~~l~--~L~~~g 48 (60)
T smart00345 19 KLPSERELAAQLGVSRTTVREALS--RLEAEG 48 (60)
T ss_pred cCcCHHHHHHHHCCCHHHHHHHHH--HHHHCC
Confidence 444899999999999999876554 444444
No 191
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=25.50 E-value=1.7e+02 Score=21.06 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHHcCCCceEEEEecCCccHHHHHHHHHhCC
Q 017101 111 AACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (377)
Q Consensus 111 A~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~g 144 (377)
+...+++|.++.|.++-.+|-..+.+.+.|.+.|
T Consensus 27 ~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 27 AAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 3456889999999999999999999999999876
No 192
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=25.38 E-value=19 Score=23.50 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=17.2
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
++-+|||+.|++|+.+|.-++.
T Consensus 16 it~~eLa~~l~vS~rTi~~~i~ 37 (55)
T PF08279_consen 16 ITAKELAEELGVSRRTIRRDIK 37 (55)
T ss_dssp BEHHHHHHHCTS-HHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 7889999999999888865443
No 193
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=25.09 E-value=16 Score=29.57 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=26.2
Q ss_pred ceecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 14 LKFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
-++|.|||+.+++++++++..+. .|...|++
T Consensus 54 ~~t~~eLa~~l~i~~~tvsr~l~--~Le~~GlI 84 (144)
T PRK11512 54 CITPVELKKVLSVDLGALTRMLD--RLVCKGWV 84 (144)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH--HHHHCCCE
Confidence 37899999999999999987666 78888866
No 194
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=25.03 E-value=2.6e+02 Score=26.62 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHH------hhcc--CC------C-CCCHHHHHHHHH
Q 017101 213 SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESEL------GRLT--GM------P-TDSYEQISEAVV 277 (377)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~------~~l~--g~------~-~~~~~~~~~~~~ 277 (377)
+-+..+.+.+++.|++++-++-.. ...+.+.+.+|++++--.++ +.+. |. . ..+.+++..++.
T Consensus 169 e~l~~L~~~~~~~Gl~~~t~v~d~--~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave 246 (360)
T PRK12595 169 EGLKILKQVADEYGLAVISEIVNP--ADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAE 246 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCH--HHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHH
Confidence 445567778889999998887542 23445556688876544333 2222 11 1 136788899999
Q ss_pred HHHhcCCCEEEEee-CCC
Q 017101 278 KCHKMGVQQVLVKL-GAK 294 (377)
Q Consensus 278 ~l~~~g~~~vvvT~-G~~ 294 (377)
.+.+.|.+.++++. |-.
T Consensus 247 ~i~~~Gn~~i~L~erg~s 264 (360)
T PRK12595 247 YIMSQGNGQIILCERGIR 264 (360)
T ss_pred HHHHCCCCCEEEECCccC
Confidence 99888887677663 543
No 195
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.84 E-value=1.6e+02 Score=25.19 Aligned_cols=56 Identities=25% Similarity=0.173 Sum_probs=37.1
Q ss_pred hhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcC-CCCC-CCChhhhhc-cCceeccC
Q 017101 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA-GGMD-APIPQELLN-FIDILSPN 254 (377)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~-~~~~-~~~~~~ll~-~~dvl~~N 254 (377)
..+|++.+....+.....++++.++++|+++.++. +... ......+.+ .+|+++.+
T Consensus 75 ~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 45788887776665556788999999999999885 3311 011222344 68888764
No 196
>PRK09726 antitoxin HipB; Provisional
Probab=24.70 E-value=21 Score=26.22 Aligned_cols=18 Identities=33% Similarity=0.215 Sum_probs=16.3
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
++|+|+|+.+++++++|+
T Consensus 26 ltq~elA~~~gvs~~tis 43 (88)
T PRK09726 26 WTQSELAKKIGIKQATIS 43 (88)
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 589999999999988887
No 197
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=24.66 E-value=5.7 Score=26.71 Aligned_cols=30 Identities=20% Similarity=0.068 Sum_probs=23.0
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
.++.|||+.+++++++++-.+. .|...|++
T Consensus 22 ~t~~~la~~l~~~~~~vs~~v~--~L~~~Glv 51 (62)
T PF12802_consen 22 LTQSELAERLGISKSTVSRIVK--RLEKKGLV 51 (62)
T ss_dssp EEHHHHHHHHTS-HHHHHHHHH--HHHHTTSE
T ss_pred cCHHHHHHHHCcCHHHHHHHHH--HHHHCCCE
Confidence 5899999999999998876555 66666654
No 198
>PRK08359 transcription factor; Validated
Probab=24.30 E-value=22 Score=30.07 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=17.0
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||+|||+.+|.++++|.-
T Consensus 99 lSQeeLA~~lgvs~stI~~ 117 (176)
T PRK08359 99 LSYEELSHEVGLSVNDLRR 117 (176)
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 5899999999999988873
No 199
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=24.22 E-value=53 Score=24.87 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=12.4
Q ss_pred CCCCCHHHHHHHHhh
Q 017101 362 PSMPDRKSVLNLLQY 376 (377)
Q Consensus 362 ~~~p~~e~i~~~l~~ 376 (377)
+++||-+|++.||+.
T Consensus 70 g~lPt~~eVe~Fl~~ 84 (105)
T PF09702_consen 70 GYLPTDEEVEDFLDD 84 (105)
T ss_pred CCCCChHHHHHHHHH
Confidence 478999999999864
No 200
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2FJR_B.
Probab=24.07 E-value=12 Score=25.85 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=13.8
Q ss_pred ceecchHHHhhcCCCCccc
Q 017101 14 LKFQNILAKQLNKPINTIP 32 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (377)
..+|.|+|+.|++++++++
T Consensus 12 ~~~~~~lA~~lgis~st~s 30 (66)
T PF07022_consen 12 VKSDKELAERLGISKSTLS 30 (66)
T ss_dssp -SSCHHHHCCTT--HHHHH
T ss_pred CCCHHHHHHHhCcCHHHhh
Confidence 3477899999999988887
No 201
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=24.00 E-value=4.4e+02 Score=22.20 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHhCCCCcccEEeccC--CCCCCceEEEEEecCCCeeEEEECCCCCCCCC------cCcC----chhHHHH
Q 017101 131 ANGKLITDALSGCGVRLDYMNVVKD--GGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWP------EKFG----DEDLEVV 198 (377)
Q Consensus 131 ~~G~~i~~~l~~~gVd~~~v~~~~~--~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~l~----~~~~~~l 198 (377)
..-..+.+.|++.|...-++...+- .+..+|+.++-++ +|++..+.+.+....-.- +.+. +.....+
T Consensus 20 Tl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~ 98 (179)
T COG1618 20 TLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALRRAL 98 (179)
T ss_pred HHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHHHHh
Confidence 4456677888888777666654311 3444555444333 577777666544211000 1111 1122345
Q ss_pred hhcCEEEEccCCCHH----HHHHHHHHHHhCCCcEEEcCCC
Q 017101 199 KKAGIVLLQREIPDS----VNIQVAKAARSAGVPVIFDAGG 235 (377)
Q Consensus 199 ~~~~~~~~~~~~~~~----~~~~~~~~a~~~g~~v~~D~~~ 235 (377)
..+|+++++---|.+ ...++++..-+.+.|+++-..-
T Consensus 99 ~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHr 139 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHR 139 (179)
T ss_pred hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEec
Confidence 567999998533333 2345566666677888877763
No 202
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.97 E-value=2e+02 Score=20.84 Aligned_cols=34 Identities=6% Similarity=0.213 Sum_probs=27.6
Q ss_pred hhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEc
Q 017101 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD 232 (377)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D 232 (377)
.++..+++....++.+...+...|+.+++|+.+.
T Consensus 23 gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~ 56 (82)
T PRK13601 23 CNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYI 56 (82)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 3566788888888888889999999999998543
No 203
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=23.77 E-value=1.1e+02 Score=24.22 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.0
Q ss_pred ecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 101 TLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 101 ~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
....|.|.-++..|...|.++.+++.+|. .-.+.|++.||++
T Consensus 48 ~~~~g~G~~~a~~l~~~gvdvvi~~~iG~-----~a~~~l~~~GIkv 89 (121)
T COG1433 48 SAEKGAGIRIAELLVDEGVDVVIASNIGP-----NAYNALKAAGIKV 89 (121)
T ss_pred cccCcchHHHHHHHHHcCCCEEEECccCH-----HHHHHHHHcCcEE
Confidence 34577788899999999999999998775 4567899999985
No 204
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=23.58 E-value=36 Score=28.49 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=13.7
Q ss_pred cchHHHhhcCCCCccce
Q 017101 17 QNILAKQLNKPINTIPF 33 (377)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (377)
=+|+++++|+||+++|.
T Consensus 44 l~Ei~E~lg~Sks~vS~ 60 (177)
T COG1510 44 LDEIAEALGMSKSNVSM 60 (177)
T ss_pred HHHHHHHHCCCcchHHH
Confidence 37888888888888874
No 205
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=23.40 E-value=2e+02 Score=26.81 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=77.7
Q ss_pred CCCEEEEccceeeeeeccCC--CCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCC
Q 017101 67 PPPLVVVGSANFDIYVEIDR--LPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~--~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~g 144 (377)
-++++|+.++|+|-|..-.+ +-..+...+-.+. .. -..+|...++-|.++.-=|-+=+... ..|++.|.+.|
T Consensus 112 ~pdl~vi~DVcLc~YT~hGHcGil~~g~i~ND~Tl-~~----L~~~Als~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g 185 (322)
T PRK13384 112 VPEMMVIPDICFCEYTDHGHCGVLHNDEVDNDATV-EN----LVKQSVTAAKAGADMLAPSAMMDGQV-KAIRQGLDAAG 185 (322)
T ss_pred CCCeEEEeeeecccCCCCCceeeccCCcCccHHHH-HH----HHHHHHHHHHcCCCeEecccccccHH-HHHHHHHHHCC
Confidence 37899999999998853211 1111111110001 11 35688888999988766665555444 46899999999
Q ss_pred CCcccEEeccCCCCCCceEEEEEec---------CCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHH
Q 017101 145 VRLDYMNVVKDGGVPTGHAVVMLQS---------DGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVN 215 (377)
Q Consensus 145 Vd~~~v~~~~~~~~~T~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (377)
..-..|.-- ..-++..++.+ .|+|...-.+-+|. .+.+.+...+.-+.+|++.+-..++ +
T Consensus 186 ~~~v~ImSY-----saKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~---~eAlre~~~D~~EGAD~lMVKPal~---Y 254 (322)
T PRK13384 186 FEHVAILAH-----SAKFASSFYGPFRAAVDCELSGDRKSYQLDYANG---RQALLEALLDEAEGADILMVKPGTP---Y 254 (322)
T ss_pred CCCCceeeh-----hHhhhhhhcchHHHHhcCCCCCCcccccCCCCCH---HHHHHHHHhhHhhCCCEEEEcCCch---H
Confidence 743222211 11111111111 13322111111111 1233333334557889999865444 6
Q ss_pred HHHHHHHHhC-CCcEE-EcCCC
Q 017101 216 IQVAKAARSA-GVPVI-FDAGG 235 (377)
Q Consensus 216 ~~~~~~a~~~-g~~v~-~D~~~ 235 (377)
..+++..+++ +.|+. ...++
T Consensus 255 LDIi~~~k~~~~lPvaaYqVSG 276 (322)
T PRK13384 255 LDVLSRLRQETHLPLAAYQVGG 276 (322)
T ss_pred HHHHHHHHhccCCCEEEEEchH
Confidence 6777777663 56653 34443
No 206
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=23.40 E-value=1.5e+02 Score=25.74 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=26.6
Q ss_pred EEEEccCCCHHHHHHHHHHHHhCCCcEEEcC
Q 017101 203 IVLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (377)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (377)
+++++-++|++.+.++++.+++.|+++++-.
T Consensus 93 ~vFVSfSMP~~sLk~Ll~qa~~~G~p~VlRG 123 (212)
T PRK13730 93 LYFVSFSIPEEGLKRMLGETRHYGIPATLRG 123 (212)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHhCCcEEEeC
Confidence 4556778899999999999999999999864
No 207
>PHA02591 hypothetical protein; Provisional
Probab=23.35 E-value=23 Score=25.33 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=15.7
Q ss_pred ceecchHHHhhcCCCCccc
Q 017101 14 LKFQNILAKQLNKPINTIP 32 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (377)
=-||++||..||+++..|.
T Consensus 59 GlSqeqIA~~LGVsqetVr 77 (83)
T PHA02591 59 GFTVEKIASLLGVSVRKVR 77 (83)
T ss_pred CCCHHHHHHHhCCCHHHHH
Confidence 3589999999999977664
No 208
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=23.30 E-value=8.8 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=22.9
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
+++.|||+.||+++++|..|.. .+...|++
T Consensus 23 ~ta~eLa~~lgl~~~~v~r~L~--~L~~~G~V 52 (68)
T smart00550 23 STALQLAKNLGLPKKEVNRVLY--SLEKKGKV 52 (68)
T ss_pred cCHHHHHHHHCCCHHHHHHHHH--HHHHCCCE
Confidence 6789999999999888776555 56666644
No 209
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.94 E-value=1.4e+02 Score=29.22 Aligned_cols=75 Identities=20% Similarity=0.372 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhCCC-cEEEcCCCCCC---CChhhhhccCceeccCHHHH--hhccCCCCCCHHHHHHHHHHHHhc-C
Q 017101 211 PDSVNIQVAKAARSAGV-PVIFDAGGMDA---PIPQELLNFIDILSPNESEL--GRLTGMPTDSYEQISEAVVKCHKM-G 283 (377)
Q Consensus 211 ~~~~~~~~~~~a~~~g~-~v~~D~~~~~~---~~~~~ll~~~dvl~~N~~E~--~~l~g~~~~~~~~~~~~~~~l~~~-g 283 (377)
|-+...+.++.+++.+. .+++|..++.. .+.+++..--+++.|+|.=+ ..+.| .+....++.+.+. +
T Consensus 167 Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G------QdA~~~A~aF~e~l~ 240 (451)
T COG0541 167 PVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG------QDAVNTAKAFNEALG 240 (451)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc------hHHHHHHHHHhhhcC
Confidence 44456677777777654 46778876531 12233333344444444211 12223 3455666666654 7
Q ss_pred CCEEEEee
Q 017101 284 VQQVLVKL 291 (377)
Q Consensus 284 ~~~vvvT~ 291 (377)
+.-||+|.
T Consensus 241 itGvIlTK 248 (451)
T COG0541 241 ITGVILTK 248 (451)
T ss_pred CceEEEEc
Confidence 77888885
No 210
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=22.90 E-value=13 Score=32.47 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.7
Q ss_pred cceecchHHHhhcCCCCccceeee
Q 017101 13 QLKFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
+=.+.+|||++|++|..||..|.+
T Consensus 162 ~G~snkeIA~~L~iS~~TVk~h~~ 185 (211)
T COG2197 162 EGLSNKEIAEELNLSEKTVKTHVS 185 (211)
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHH
Confidence 335779999999999999998887
No 211
>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data. This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.
Probab=22.84 E-value=28 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=0.0
Q ss_pred ceecchHHHhhcCCCCccceeeeeccCCcchhhh
Q 017101 14 LKFQNILAKQLNKPINTIPFHFTITNRQFPAHVI 47 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (377)
=.++.|+|..||++-|||+..+.-.++.+|..++
T Consensus 49 PLt~~~iA~~lgl~~STVSRav~~Ky~~t~~Gi~ 82 (160)
T PF04552_consen 49 PLTMKDIADELGLHESTVSRAVKNKYIQTPRGIF 82 (160)
T ss_dssp ----------------------------------
T ss_pred CCCHHHHHHHhCCCHhHHHHHHcCceeecCCeee
Confidence 3478999999999999999888866777777554
No 212
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=22.58 E-value=2.8e+02 Score=23.20 Aligned_cols=52 Identities=19% Similarity=0.136 Sum_probs=38.7
Q ss_pred eecCCChHH-HHHHHHHHcCCCceEEEE-ecCCccHHHHHHHHHhCCCCcccEE
Q 017101 100 QTLAGGKGA-NQAACGAKLSHPTYFVGQ-VGEDANGKLITDALSGCGVRLDYMN 151 (377)
Q Consensus 100 ~~~~GG~~~-NvA~~la~LG~~v~li~~-vG~D~~G~~i~~~l~~~gVd~~~v~ 151 (377)
..+.||+-. -.|..|.+||.++.++++ +|--...+...+.....|.+..-++
T Consensus 5 vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~ 58 (198)
T COG2117 5 VLFSGGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQ 58 (198)
T ss_pred EEecCCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceec
Confidence 356788744 466789999999999986 7765677888888887777665444
No 213
>PF13309 HTH_22: HTH domain
Probab=22.54 E-value=26 Score=24.03 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=12.2
Q ss_pred chHHHhhcCCCCcc
Q 017101 18 NILAKQLNKPINTI 31 (377)
Q Consensus 18 ~~~~~~~~~~~~~~ 31 (377)
+.+|+.|++||+||
T Consensus 46 ~~vA~~L~iS~~TV 59 (64)
T PF13309_consen 46 EYVAEKLGISRATV 59 (64)
T ss_pred HHHHHHHCCCHHHH
Confidence 57899999998887
No 214
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.53 E-value=1.9e+02 Score=28.23 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=27.0
Q ss_pred CCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 103 AGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 103 ~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
.|+.|.-+|..|++.|.+|.++..-..+.. +...+.|.+.|++
T Consensus 13 ~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 13 AGVSGLALAKFLKKLGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 455677899999999999887754221222 2223456666765
No 215
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.05 E-value=4.5e+02 Score=23.91 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhh---c--cCCC----------CCCHHHHHHHHH
Q 017101 213 SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGR---L--TGMP----------TDSYEQISEAVV 277 (377)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~---l--~g~~----------~~~~~~~~~~~~ 277 (377)
+.+..+.+.+.+.|.+++-..-. ....+...+++|++-+-..-++. | .|.. ..+.++...++.
T Consensus 96 ~gL~~l~~a~~~~Gl~vvtEvm~--~~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAE 173 (286)
T COG2876 96 EGLKLLKRAADETGLPVVTEVMD--VRDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAE 173 (286)
T ss_pred HHHHHHHHHHHHcCCeeEEEecC--HHHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHH
Confidence 44555566667789888665422 12345667788888654332221 1 1211 235678888999
Q ss_pred HHHhcCCCEEEEeeCCCCeEEEEe
Q 017101 278 KCHKMGVQQVLVKLGAKGSALFVE 301 (377)
Q Consensus 278 ~l~~~g~~~vvvT~G~~G~~~~~~ 301 (377)
++...|...||+ .++|+.-+.+
T Consensus 174 YI~s~GN~~vIL--CERGIRtfe~ 195 (286)
T COG2876 174 YILSHGNGNVIL--CERGIRTFEK 195 (286)
T ss_pred HHHhCCCCcEEE--Eecccccccc
Confidence 999888776653 3566544433
No 216
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=21.89 E-value=1.2e+02 Score=22.40 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 105 GKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 105 G~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
|.+...+..|...|+++.+++.+|. ...+.|++.||..
T Consensus 50 ~~~~~~~~~l~~~~v~~vi~~~iG~-----~~~~~l~~~gI~v 87 (103)
T cd00851 50 GAGGKAAEFLADEGVDVVIVGGIGP-----RALNKLRNAGIKV 87 (103)
T ss_pred CCchHHHHHHHHcCCCEEEeCCCCc-----CHHHHHHHCCCEE
Confidence 4467788888889999999987775 4677888899875
No 217
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=21.72 E-value=6.2e+02 Score=24.57 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCcEEEc-CCCC---CCCChhhhhcc-Ccee-----ccCHHHHhhccCCC
Q 017101 214 VNIQVAKAARSAGVPVIFD-AGGM---DAPIPQELLNF-IDIL-----SPNESELGRLTGMP 265 (377)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D-~~~~---~~~~~~~ll~~-~dvl-----~~N~~E~~~l~g~~ 265 (377)
...++++.+++.++++.+. .++. .....+++.++ +|.+ ..|.+-.+.++|.+
T Consensus 90 ~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~ 151 (404)
T TIGR03278 90 ELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDP 151 (404)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCC
Confidence 4567777777777777775 5432 11223445444 5544 33444444555543
No 218
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=21.71 E-value=25 Score=28.30 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=25.3
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
++|.|||+.+++++++++-.+. .|...|++
T Consensus 47 ~t~~eLa~~l~~~~~tvt~~v~--~Le~~GlV 76 (144)
T PRK03573 47 QSQIQLAKAIGIEQPSLVRTLD--QLEEKGLI 76 (144)
T ss_pred CCHHHHHHHhCCChhhHHHHHH--HHHHCCCE
Confidence 5789999999999999986555 78888866
No 219
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=21.45 E-value=4.1e+02 Score=24.02 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCH-----HHH-hhcc--CCC-------CCCHHHHHHHHH
Q 017101 213 SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNE-----SEL-GRLT--GMP-------TDSYEQISEAVV 277 (377)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~-----~E~-~~l~--g~~-------~~~~~~~~~~~~ 277 (377)
+-+..+.+..++.|.+|+-|.... ...+...+++|+|-+-. .++ +++. +.+ ..+.++..-+++
T Consensus 60 eGL~iL~~vk~~~glpvvTeV~~~--~~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aae 137 (258)
T TIGR01362 60 EGLKILQKVKEEFGVPILTDVHES--SQCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVE 137 (258)
T ss_pred HHHHHHHHHHHHhCCceEEEeCCH--HHHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHH
Confidence 334455556667899999988642 33456778899886433 222 2221 111 235678888999
Q ss_pred HHHhcCCCEEEEe
Q 017101 278 KCHKMGVQQVLVK 290 (377)
Q Consensus 278 ~l~~~g~~~vvvT 290 (377)
++...|.+.|+++
T Consensus 138 yi~~~Gn~~viLc 150 (258)
T TIGR01362 138 KVLSTGNKNILLC 150 (258)
T ss_pred HHHHcCCCcEEEE
Confidence 9999888877776
No 220
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=21.39 E-value=45 Score=24.32 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=33.2
Q ss_pred ecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 101 TLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 101 ~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
...+|.+...+..+...|+++.+++.+| ....+.|.+.||.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~li~~~iG-----~~~~~~L~~~gI~v 77 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLAEEGVDVLICGGIG-----EGAFRALKEAGIKV 77 (94)
T ss_dssp CCSSCHSTHHHHHHHHTTESEEEESCSC-----HHHHHHHHHTTSEE
T ss_pred ccccccchhHHHHHHHcCCCEEEEeCCC-----HHHHHHHHHCCCEE
Confidence 3456778888888888999988888765 56788999999875
No 221
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=21.19 E-value=1.3e+02 Score=28.67 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHh
Q 017101 213 SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELG 259 (377)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~ 259 (377)
.-...+.+.|+++++|+++|.. .+.+++-+++.++.+.+
T Consensus 206 ~n~r~v~~ia~ky~ipvv~Da~--------RfaENaYFIk~rE~gYr 244 (471)
T COG3033 206 ANMKAVYEIAKKYDIPVVMDAA--------RFAENAYFIKQREPGYR 244 (471)
T ss_pred HhHHHHHHHHHHcCCcEEeehh--------hhhhhhhhhhhcCcccc
Confidence 3467788999999999999984 35667777887776553
No 222
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=20.85 E-value=1.7e+02 Score=25.00 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=27.6
Q ss_pred cCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCC
Q 017101 201 AGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (377)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (377)
.+++++.+..+......+.+..+..|.++++++.+.
T Consensus 93 ~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGl 128 (185)
T PF09314_consen 93 YDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGL 128 (185)
T ss_pred CCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcc
Confidence 568888776655556677777788899999999875
No 223
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.81 E-value=7.6e+02 Score=25.72 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=43.9
Q ss_pred HHHhhcCEEEEccCCCHHH---HHHHHHHHHhC-CC-cEEEcCCCCCCCCh-------------hhhhccCcee-ccCHH
Q 017101 196 EVVKKAGIVLLQREIPDSV---NIQVAKAARSA-GV-PVIFDAGGMDAPIP-------------QELLNFIDIL-SPNES 256 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~---~~~~~~~a~~~-g~-~v~~D~~~~~~~~~-------------~~ll~~~dvl-~~N~~ 256 (377)
..+.++|++++-|..+.+. ....+..|++. |. .|++||........ .-++..+.++ .-+.+
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~ii~ytpe 244 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYIIRYTPE 244 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHHHhCCHH
Confidence 3467899988877555432 22223445554 65 47889864311100 0011111111 12456
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHhc
Q 017101 257 ELGRLTGMPTDSYEQISEAVVKCHKM 282 (377)
Q Consensus 257 E~~~l~g~~~~~~~~~~~~~~~l~~~ 282 (377)
.++.++|.+ .+++.++++.+.+.
T Consensus 245 ~v~~itGvp---~e~I~~~A~~~a~a 267 (649)
T cd02752 245 EVEDICGVP---KEDFLKVAEMFAAT 267 (649)
T ss_pred HHHHHHCcC---HHHHHHHHHHHHhc
Confidence 677777765 34667777777654
No 224
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=20.72 E-value=2.4e+02 Score=20.23 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=30.8
Q ss_pred HHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCC
Q 017101 110 QAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (377)
Q Consensus 110 vA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~g 144 (377)
.+...+++|.++.|-++-.+|-..+.+.+.|.+.|
T Consensus 24 ~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 24 KAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred HHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 45567889999999999999999999999999876
No 225
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=20.52 E-value=53 Score=28.64 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=22.8
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcch
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPA 44 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (377)
+||-|||+.||.+.+=|+ .+-.-..++||
T Consensus 41 vSQ~elA~~l~vSpSVIS-DYE~GRRk~Pg 69 (241)
T COG1709 41 VSQTELARELGVSPSVIS-DYESGRRKSPG 69 (241)
T ss_pred ccHHHHHHHhCCCcceee-hhhccCccCcc
Confidence 689999999999977777 55544566677
No 226
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=20.51 E-value=1.3e+02 Score=28.87 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCcEEEcCCCCC----CCChhhhhc-cCceeccCHH
Q 017101 216 IQVAKAARSAGVPVIFDAGGMD----APIPQELLN-FIDILSPNES 256 (377)
Q Consensus 216 ~~~~~~a~~~g~~v~~D~~~~~----~~~~~~ll~-~~dvl~~N~~ 256 (377)
.++++.|+++++|+++|.++-+ +..+++++. .+|++..+-+
T Consensus 177 ~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~Sgd 222 (395)
T COG1921 177 EELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGD 222 (395)
T ss_pred HHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecc
Confidence 4788999999999999998632 233444444 4787765543
No 227
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.48 E-value=4.5e+02 Score=22.49 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCcEEEcCCCCCCCChhhhhc-cCceeccCHHHHhhccC
Q 017101 215 NIQVAKAARSAGVPVIFDAGGMDAPIPQELLN-FIDILSPNESELGRLTG 263 (377)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~-~~dvl~~N~~E~~~l~g 263 (377)
....++..++.|+.+.+|--+........+.. .+|+++.+......+..
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~ 183 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET 183 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc
Confidence 56778888999999999854433333333443 38999999888777654
No 228
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=20.47 E-value=1.3e+02 Score=25.09 Aligned_cols=45 Identities=16% Similarity=0.030 Sum_probs=29.8
Q ss_pred cCCChHHHHHHHHHHcCCCceEEEEecCCccHHH---HHHHHHhCCCC
Q 017101 102 LAGGKGANQAACGAKLSHPTYFVGQVGEDANGKL---ITDALSGCGVR 146 (377)
Q Consensus 102 ~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~---i~~~l~~~gVd 146 (377)
.-||.|.-+|+.|++.|.+|.++..-..+...+. -.+.+++.|+.
T Consensus 36 nNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (169)
T PF03853_consen 36 NNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIK 83 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-E
T ss_pred CChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCc
Confidence 5788899999999999999888554333333333 34455556654
No 229
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.44 E-value=2.2e+02 Score=20.53 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.6
Q ss_pred hcCEEEEccCCCHHHHHHHHHHHHhCCCcEEE
Q 017101 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIF 231 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~ 231 (377)
.+..+++....++.....+...|+++++|++.
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~ 58 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEKGVPVSK 58 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 45678888888888778888889999998754
No 230
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.40 E-value=3.4e+02 Score=25.78 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHh------hcc--CC------CC-CCHHHHHHHHH
Q 017101 213 SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELG------RLT--GM------PT-DSYEQISEAVV 277 (377)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~------~l~--g~------~~-~~~~~~~~~~~ 277 (377)
+-+..+.+.+++.|++++-++-.. ...+.+.+++|+++.--.+++ ++. |. .. .+.+++..+++
T Consensus 152 ~gl~~L~~~~~e~Gl~~~tev~d~--~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e 229 (352)
T PRK13396 152 SALELLAAAREATGLGIITEVMDA--ADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAE 229 (352)
T ss_pred HHHHHHHHHHHHcCCcEEEeeCCH--HHHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHH
Confidence 345555666778999998887542 334556677898875443332 222 11 11 26788999999
Q ss_pred HHHhcCCCEEE-EeeCC
Q 017101 278 KCHKMGVQQVL-VKLGA 293 (377)
Q Consensus 278 ~l~~~g~~~vv-vT~G~ 293 (377)
.+...|.+.++ +-+|-
T Consensus 230 ~i~~~Gn~~viL~erG~ 246 (352)
T PRK13396 230 YILAAGNPNVILCERGI 246 (352)
T ss_pred HHHHcCCCeEEEEecCC
Confidence 99988876544 44554
No 231
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.31 E-value=36 Score=21.63 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=15.7
Q ss_pred ecchHHHhhcCCCCccce
Q 017101 16 FQNILAKQLNKPINTIPF 33 (377)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (377)
+..++|+.+++++++|.-
T Consensus 14 s~~~~a~~~gis~~tv~~ 31 (52)
T PF13518_consen 14 SVREIAREFGISRSTVYR 31 (52)
T ss_pred CHHHHHHHHCCCHhHHHH
Confidence 778999999999988864
No 232
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=20.11 E-value=5.6e+02 Score=22.18 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=24.0
Q ss_pred cCEEEEcc--CCCHHHHHHHHHHHHhCCCcEEE
Q 017101 201 AGIVLLQR--EIPDSVNIQVAKAARSAGVPVIF 231 (377)
Q Consensus 201 ~~~~~~~~--~~~~~~~~~~~~~a~~~g~~v~~ 231 (377)
.+.+.++- .+.++.+..+.+.+.+.|++|++
T Consensus 83 ~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~ 115 (201)
T COG1435 83 VDCVLIDEAQFFDEELVYVLNELADRLGIPVIC 115 (201)
T ss_pred cCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEE
Confidence 57888874 45667777888888888999887
No 233
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.11 E-value=69 Score=23.92 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHcCCCceEEEEecCC-ccHHHHHHHHHhCCC
Q 017101 105 GKGANQAACGAKLSHPTYFVGQVGED-ANGKLITDALSGCGV 145 (377)
Q Consensus 105 G~~~NvA~~la~LG~~v~li~~vG~D-~~G~~i~~~l~~~gV 145 (377)
|++-|+|...-.-|.++..+--++.| ..|+...+.-.+.||
T Consensus 10 GkGq~Va~Gve~AGg~aiVipG~~ADmklGdVM~~e~Ad~Gi 51 (115)
T TIGR03577 10 GKGQKVAKGVEAAGGRAVVIPGMAADMKLGDVMKQENADLGI 51 (115)
T ss_pred cCcchhhhhHHhcCCeEEEecCccccchHHHHHhhhcCccce
Confidence 67899999999999999999999988 677766655555554
No 234
>PRK13698 plasmid-partitioning protein; Provisional
Probab=20.02 E-value=30 Score=32.22 Aligned_cols=22 Identities=18% Similarity=-0.014 Sum_probs=18.8
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
.+|+|||+++|++|+.|+-.+.
T Consensus 177 ~tQeeLA~~lG~SRs~Vsn~Lr 198 (323)
T PRK13698 177 GNISALADAENISRKIITRCIN 198 (323)
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 5899999999999999985443
Done!