Query 017101
Match_columns 377
No_of_seqs 352 out of 1779
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 08:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ry7_A Ribokinase; transferase 100.0 1.3E-52 4.6E-57 389.4 29.3 301 67-373 2-304 (304)
2 1rkd_A Ribokinase; carbohydrat 100.0 1.5E-51 5.3E-56 383.2 32.8 304 67-376 4-307 (309)
3 2fv7_A Ribokinase; structural 100.0 4.5E-51 1.5E-55 383.5 28.1 303 66-372 23-328 (331)
4 3kzh_A Probable sugar kinase; 100.0 7.3E-51 2.5E-55 381.7 28.5 304 65-376 4-309 (328)
5 2rbc_A Sugar kinase, AGR_C_456 100.0 5.2E-50 1.8E-54 377.8 29.0 297 67-376 29-328 (343)
6 1vm7_A Ribokinase; TM0960, str 100.0 1.8E-49 6.2E-54 369.3 29.8 295 68-376 15-310 (311)
7 3ikh_A Carbohydrate kinase; tr 100.0 2.8E-50 9.4E-55 372.9 21.8 285 67-376 2-288 (299)
8 2nwh_A AGR_C_3442P, carbohydra 100.0 2.3E-49 7.9E-54 369.7 26.1 300 67-375 3-306 (317)
9 3go6_A Ribokinase RBSK; phosph 100.0 2.6E-49 8.9E-54 368.0 26.2 280 67-376 19-304 (310)
10 2c4e_A Sugar kinase MJ0406; tr 100.0 5.1E-49 1.8E-53 364.9 22.6 290 67-376 5-299 (302)
11 3iq0_A Putative ribokinase II; 100.0 5E-48 1.7E-52 362.7 28.1 295 67-376 3-312 (330)
12 3ljs_A Fructokinase; fructokia 100.0 8.3E-49 2.8E-53 369.2 21.0 296 66-376 3-328 (338)
13 3pl2_A Sugar kinase, ribokinas 100.0 1.6E-47 5.5E-52 357.6 27.6 293 67-376 8-317 (319)
14 3ktn_A Carbohydrate kinase, PF 100.0 2.5E-47 8.4E-52 360.3 27.6 297 67-376 2-331 (346)
15 3h49_A Ribokinase; transferase 100.0 3.1E-47 1.1E-51 356.6 26.9 298 67-376 5-314 (325)
16 3hj6_A Fructokinase, FRK; fruc 100.0 3.7E-49 1.3E-53 369.9 13.6 293 66-375 20-326 (327)
17 4du5_A PFKB; structural genomi 100.0 2.3E-47 8E-52 358.9 25.5 295 62-373 21-334 (336)
18 3vas_A Putative adenosine kina 100.0 3.3E-48 1.1E-52 369.1 19.8 300 67-371 24-365 (370)
19 2qcv_A Putative 5-dehydro-2-de 100.0 1.2E-46 3.9E-51 353.8 29.1 298 67-376 11-325 (332)
20 2pkf_A Adenosine kinase; trans 100.0 4E-47 1.4E-51 357.1 24.9 298 65-376 8-319 (334)
21 4e3a_A Sugar kinase protein; s 100.0 4.1E-47 1.4E-51 359.2 24.7 294 67-372 25-348 (352)
22 1v1a_A 2-keto-3-deoxygluconate 100.0 2.5E-46 8.6E-51 348.0 29.6 287 67-376 1-303 (309)
23 2v78_A Fructokinase; transfera 100.0 2E-46 6.7E-51 349.3 28.1 289 67-376 1-310 (313)
24 3b1n_A Ribokinase, putative; r 100.0 9.6E-47 3.3E-51 353.2 25.0 290 68-376 1-305 (326)
25 4e84_A D-beta-D-heptose 7-phos 100.0 1.4E-46 4.7E-51 355.3 25.5 292 67-371 53-351 (352)
26 2jg1_A Tagatose-6-phosphate ki 100.0 2.4E-46 8.3E-51 351.1 26.6 295 67-377 20-325 (330)
27 3umo_A 6-phosphofructokinase i 100.0 9.8E-46 3.3E-50 344.0 30.2 293 68-376 2-306 (309)
28 2ajr_A Sugar kinase, PFKB fami 100.0 1.8E-46 6E-51 352.3 23.8 294 67-376 12-324 (331)
29 2dcn_A Hypothetical fructokina 100.0 4.4E-46 1.5E-50 346.7 25.6 289 67-377 1-309 (311)
30 4e69_A 2-dehydro-3-deoxyglucon 100.0 1.4E-45 4.9E-50 345.5 27.8 283 61-362 17-317 (328)
31 2f02_A Tagatose-6-phosphate ki 100.0 1.5E-45 5.1E-50 344.8 27.2 293 68-376 3-307 (323)
32 3cqd_A 6-phosphofructokinase i 100.0 8.1E-46 2.8E-50 344.5 24.9 294 68-376 2-306 (309)
33 3ie7_A LIN2199 protein; phosph 100.0 1.1E-45 3.8E-50 345.3 25.1 290 68-377 3-304 (320)
34 2hlz_A Ketohexokinase; non-pro 100.0 6.3E-45 2.1E-49 338.9 29.9 280 67-361 17-309 (312)
35 3loo_A Anopheles gambiae adeno 100.0 3.8E-47 1.3E-51 361.4 14.9 292 67-362 23-355 (365)
36 1tyy_A Putative sugar kinase; 100.0 2.4E-46 8.1E-51 352.4 19.0 285 67-376 24-329 (339)
37 3otx_A Adenosine kinase, putat 100.0 2.3E-46 8E-51 353.8 18.5 295 66-367 6-342 (347)
38 3lhx_A Ketodeoxygluconokinase; 100.0 1.5E-45 5.2E-50 344.2 22.3 275 68-362 5-304 (319)
39 3uq6_A Adenosine kinase, putat 100.0 6.8E-46 2.3E-50 353.5 19.8 303 67-375 26-371 (372)
40 2jg5_A Fructose 1-phosphate ki 100.0 2.6E-44 9E-49 333.9 27.9 289 68-376 1-297 (306)
41 2abq_A Fructose 1-phosphate ki 100.0 3.5E-44 1.2E-48 333.1 28.1 288 69-376 2-297 (306)
42 3ewm_A Uncharacterized sugar k 100.0 1.6E-44 5.5E-49 336.4 25.5 282 67-376 1-300 (313)
43 4gm6_A PFKB family carbohydrat 100.0 1.3E-44 4.6E-49 342.2 24.1 298 67-376 24-344 (351)
44 1bx4_A Protein (adenosine kina 100.0 2.3E-45 7.7E-50 346.8 18.7 293 66-366 5-340 (345)
45 3bf5_A Ribokinase related prot 100.0 1.8E-45 6.2E-50 341.4 16.3 276 66-376 19-300 (306)
46 2afb_A 2-keto-3-deoxygluconate 100.0 7.4E-43 2.5E-47 330.3 32.0 296 66-376 11-343 (351)
47 2abs_A Adenosine kinase, AK; r 100.0 3.1E-43 1.1E-47 336.6 26.1 287 67-361 32-375 (383)
48 2qhp_A Fructokinase; NP_810670 100.0 5.9E-43 2E-47 323.3 23.4 275 68-366 4-289 (296)
49 3kd6_A Carbohydrate kinase, PF 100.0 9.4E-43 3.2E-47 324.4 20.6 282 68-376 3-297 (313)
50 1vk4_A PFKB carbohydrate kinas 100.0 2.1E-40 7.3E-45 306.4 12.7 268 69-371 13-293 (298)
51 2yxt_A Pyridoxal kinase; beta 99.9 7.1E-25 2.4E-29 203.6 14.2 215 120-357 12-269 (312)
52 1jxh_A Phosphomethylpyrimidine 99.9 1.2E-23 4.3E-28 192.9 13.2 156 201-358 95-269 (288)
53 2ddm_A Pyridoxine kinase; pyri 99.9 1.1E-23 3.9E-28 192.7 12.2 159 198-359 86-268 (283)
54 1ub0_A THID, phosphomethylpyri 99.9 1.8E-22 6.1E-27 182.2 16.2 155 201-357 71-243 (258)
55 2i5b_A Phosphomethylpyrimidine 99.9 2.6E-20 8.7E-25 169.3 22.2 157 200-358 74-250 (271)
56 3pzs_A PM kinase, pyridoxamine 99.8 7.5E-19 2.6E-23 161.0 14.7 156 199-357 76-259 (289)
57 3h74_A Pyridoxal kinase; PSI-I 99.8 2.3E-18 7.8E-23 156.9 13.6 156 200-357 74-248 (282)
58 3mbh_A Putative phosphomethylp 99.8 4.9E-18 1.7E-22 155.5 14.8 155 200-357 77-258 (291)
59 3zs7_A Pyridoxal kinase; trans 99.7 1.1E-16 3.7E-21 147.0 17.2 153 200-356 76-260 (300)
60 1ekq_A Hydroxyethylthiazole ki 99.7 1.5E-15 5.2E-20 137.5 17.4 158 195-356 53-234 (272)
61 3rm5_A Hydroxymethylpyrimidine 99.6 6.4E-14 2.2E-18 138.9 16.4 150 200-351 91-269 (550)
62 1v8a_A Hydroxyethylthiazole ki 99.3 1.5E-11 5.1E-16 110.5 14.2 153 193-350 49-220 (265)
63 3bgk_A SMU.573, putative uncha 99.2 1.1E-10 3.8E-15 107.1 10.6 168 196-376 121-304 (311)
64 3rpz_A ADP/ATP-dependent NAD(P 99.1 8.3E-10 2.8E-14 99.4 14.1 172 198-376 96-273 (279)
65 2r3b_A YJEF-related protein; p 99.1 6.6E-10 2.2E-14 101.9 11.7 165 196-375 107-286 (310)
66 3rss_A Putative uncharacterize 99.0 4E-09 1.4E-13 102.7 14.3 173 195-376 315-495 (502)
67 3dzv_A 4-methyl-5-(beta-hydrox 99.0 4.2E-08 1.5E-12 87.8 18.3 155 192-350 50-229 (273)
68 3drw_A ADP-specific phosphofru 98.7 7.8E-07 2.7E-11 84.9 17.7 181 100-289 113-356 (474)
69 3nl6_A Thiamine biosynthetic b 98.4 1.4E-05 4.7E-10 78.5 18.4 154 193-350 298-495 (540)
70 3hpd_A Hydroxyethylthiazole ki 98.4 8.5E-06 2.9E-10 72.3 14.2 150 193-348 49-218 (265)
71 3k5w_A Carbohydrate kinase; 11 98.2 1.3E-05 4.6E-10 77.2 11.8 166 199-376 291-466 (475)
72 1ua4_A Glucokinase, ADP-depend 98.1 0.0001 3.4E-09 70.5 15.5 181 101-288 108-340 (455)
73 1l2l_A ADP-dependent glucokina 97.9 6E-05 2.1E-09 71.8 10.2 176 102-286 112-341 (457)
74 1gc5_A ADP-dependent glucokina 97.8 0.00047 1.6E-08 65.8 15.3 177 101-286 116-348 (467)
75 2l1p_A DNA-binding protein SAT 74.1 0.48 1.6E-05 33.1 -0.7 22 14-35 32-53 (83)
76 2w7n_A TRFB transcriptional re 67.4 0.85 2.9E-05 33.6 -0.7 19 15-33 35-53 (101)
77 1jhg_A Trp operon repressor; c 66.0 0.94 3.2E-05 33.4 -0.6 19 15-33 59-77 (101)
78 1rzs_A Antirepressor, regulato 65.0 0.96 3.3E-05 29.8 -0.7 20 15-34 11-30 (61)
79 3fmy_A HTH-type transcriptiona 57.6 2.9 0.0001 28.3 0.7 19 15-33 25-43 (73)
80 3can_A Pyruvate-formate lyase- 53.5 82 0.0028 25.0 9.4 72 213-287 19-96 (182)
81 2hin_A GP39, repressor protein 53.5 1.5 5.3E-05 30.0 -1.3 32 13-46 9-40 (71)
82 1uxc_A FRUR (1-57), fructose r 52.1 2.3 7.8E-05 28.5 -0.6 22 15-36 1-22 (65)
83 1zx4_A P1 PARB, plasmid partit 50.6 2.6 8.9E-05 35.0 -0.6 19 15-33 25-43 (192)
84 1nr3_A MTH0916, DNA-binding pr 49.5 3.7 0.00013 31.1 0.2 19 15-33 6-24 (122)
85 3omt_A Uncharacterized protein 49.3 2.8 9.4E-05 28.2 -0.6 19 15-33 22-40 (73)
86 3t76_A VANU, transcriptional r 48.6 2.8 9.6E-05 29.9 -0.6 19 15-33 38-56 (88)
87 2k9q_A Uncharacterized protein 48.5 2.9 9.8E-05 28.5 -0.6 19 15-33 16-34 (77)
88 3kz3_A Repressor protein CI; f 48.3 3 0.0001 28.8 -0.6 19 15-33 26-44 (80)
89 2x48_A CAG38821; archeal virus 47.4 3.2 0.00011 26.2 -0.5 20 15-34 32-51 (55)
90 2xi8_A Putative transcription 46.6 3.2 0.00011 27.0 -0.6 19 15-33 15-33 (66)
91 1ztd_A Hypothetical protein PF 46.1 24 0.00081 26.0 3.9 31 317-347 64-95 (133)
92 1zug_A Phage 434 CRO protein; 45.8 3.3 0.00011 27.4 -0.6 19 15-33 17-35 (71)
93 2l8n_A Transcriptional repress 44.7 3.6 0.00012 27.7 -0.6 22 14-35 9-30 (67)
94 2r1j_L Repressor protein C2; p 44.6 3.6 0.00012 26.9 -0.6 19 15-33 19-37 (68)
95 1tc3_C Protein (TC3 transposas 43.8 3.9 0.00013 24.7 -0.5 21 15-35 22-42 (51)
96 1r69_A Repressor protein CI; g 43.7 3.7 0.00013 27.0 -0.6 18 15-32 15-32 (69)
97 3trb_A Virulence-associated pr 43.6 3.8 0.00013 30.2 -0.6 19 15-33 28-46 (104)
98 2a6c_A Helix-turn-helix motif; 43.3 3.9 0.00013 28.5 -0.6 19 15-33 32-50 (83)
99 1neq_A DNA-binding protein NER 41.7 4.2 0.00014 27.9 -0.6 19 15-33 23-41 (74)
100 2cw1_A SN4M; lambda CRO fold, 41.0 4.2 0.00015 27.2 -0.6 19 15-33 14-32 (65)
101 3b7h_A Prophage LP1 protein 11 40.9 4.4 0.00015 27.4 -0.6 19 15-33 21-39 (78)
102 3qq6_A HTH-type transcriptiona 40.8 4.4 0.00015 27.8 -0.6 19 15-33 24-42 (78)
103 4ghj_A Probable transcriptiona 40.7 4.5 0.00015 29.7 -0.6 19 15-33 50-68 (101)
104 1y7y_A C.AHDI; helix-turn-heli 40.5 4.5 0.00015 27.0 -0.6 19 15-33 27-45 (74)
105 2b5a_A C.BCLI; helix-turn-heli 40.3 4.5 0.00015 27.3 -0.6 19 15-33 24-42 (77)
106 3o9x_A Uncharacterized HTH-typ 40.1 7.9 0.00027 29.6 0.7 19 15-33 85-103 (133)
107 1adr_A P22 C2 repressor; trans 40.0 4.7 0.00016 27.1 -0.6 19 15-33 19-37 (76)
108 3eus_A DNA-binding protein; st 39.4 4.9 0.00017 28.2 -0.6 19 15-33 28-46 (86)
109 3bd1_A CRO protein; transcript 39.3 4.6 0.00016 27.6 -0.7 18 16-33 13-30 (79)
110 2p5t_A Putative transcriptiona 39.3 6.3 0.00022 31.3 0.0 19 15-33 15-33 (158)
111 3f6w_A XRE-family like protein 38.5 5.1 0.00017 27.6 -0.6 19 15-33 28-46 (83)
112 2wiu_B HTH-type transcriptiona 38.1 5.2 0.00018 27.8 -0.6 19 15-33 26-44 (88)
113 3s8q_A R-M controller protein; 38.0 5.2 0.00018 27.5 -0.6 19 15-33 25-43 (82)
114 2ef8_A C.ECOT38IS, putative tr 37.2 5.4 0.00019 27.4 -0.6 19 15-33 24-42 (84)
115 2jpc_A SSRB; DNA binding prote 36.9 3.8 0.00013 26.4 -1.4 22 15-36 14-35 (61)
116 2auw_A Hypothetical protein NE 36.6 5.8 0.0002 32.1 -0.6 18 15-32 104-121 (170)
117 3bs3_A Putative DNA-binding pr 36.3 5.7 0.0002 26.6 -0.6 19 15-33 24-42 (76)
118 2kpj_A SOS-response transcript 36.0 5.8 0.0002 28.2 -0.7 19 15-33 23-41 (94)
119 2ppx_A AGR_C_3184P, uncharacte 35.5 6.1 0.00021 28.5 -0.6 18 15-32 44-61 (99)
120 1qgp_A Protein (double strande 35.4 1.8 6.3E-05 30.0 -3.3 31 14-46 31-61 (77)
121 1lmb_3 Protein (lambda repress 34.5 6.5 0.00022 27.7 -0.6 19 15-33 31-49 (92)
122 2o38_A Hypothetical protein; a 34.5 6.5 0.00022 29.8 -0.6 19 15-33 54-72 (120)
123 2ewt_A BLDD, putative DNA-bind 33.4 7 0.00024 25.8 -0.6 18 15-32 22-41 (71)
124 1y8q_A Ubiquitin-like 1 activa 33.3 1.9E+02 0.0064 26.0 9.0 35 196-231 121-155 (346)
125 1jko_C HIN recombinase, DNA-in 33.1 6.9 0.00024 23.8 -0.6 20 15-34 22-41 (52)
126 1x57_A Endothelial differentia 32.7 7.2 0.00025 27.4 -0.6 19 15-33 27-45 (91)
127 3cec_A Putative antidote prote 32.7 7.3 0.00025 28.3 -0.6 19 15-33 32-50 (104)
128 2ict_A Antitoxin HIGA; helix-t 31.9 7.5 0.00026 27.5 -0.6 19 15-33 22-40 (94)
129 2qvo_A Uncharacterized protein 31.4 2.7 9.4E-05 30.2 -3.1 30 15-46 31-60 (95)
130 3g5g_A Regulatory protein; tra 30.9 8 0.00027 28.0 -0.6 19 15-33 42-60 (99)
131 2l49_A C protein; P2 bacteriop 30.9 8.1 0.00028 27.6 -0.6 19 15-33 18-36 (99)
132 2eby_A Putative HTH-type trans 30.3 8.5 0.00029 28.4 -0.6 19 15-33 25-43 (113)
133 3c8f_A Pyruvate formate-lyase 29.9 2E+02 0.0069 23.5 8.2 83 202-287 71-164 (245)
134 2jvl_A TRMBF1; coactivator, he 29.5 8.8 0.0003 28.2 -0.6 19 15-33 50-68 (107)
135 2wus_R RODZ, putative uncharac 29.4 8.8 0.0003 28.6 -0.6 19 15-33 21-39 (112)
136 3vk0_A NHTF, transcriptional r 28.8 9.2 0.00031 28.3 -0.6 18 15-32 35-52 (114)
137 3op9_A PLI0006 protein; struct 27.6 10 0.00034 28.0 -0.6 19 15-33 23-41 (114)
138 3mlf_A Transcriptional regulat 27.4 10 0.00035 28.1 -0.6 19 15-33 37-55 (111)
139 2dha_A FLJ20171 protein; RRM d 26.7 93 0.0032 23.2 4.8 44 102-145 6-49 (123)
140 3kxa_A NGO0477 protein, putati 26.5 11 0.00038 29.3 -0.6 19 15-33 82-100 (141)
141 1b0n_A Protein (SINR protein); 26.1 11 0.00038 27.4 -0.6 18 15-32 15-32 (111)
142 3f52_A CLP gene regulator (CLG 25.9 11 0.00039 27.8 -0.6 19 15-33 42-60 (117)
143 3fym_A Putative uncharacterize 25.7 11 0.00039 28.7 -0.6 18 15-32 17-34 (130)
144 2pij_A Prophage PFL 6 CRO; tra 25.3 11 0.00039 24.5 -0.6 20 14-33 13-32 (67)
145 3ivp_A Putative transposon-rel 25.0 12 0.00041 28.2 -0.6 19 15-33 26-44 (126)
146 2dk5_A DNA-directed RNA polyme 25.0 9.2 0.00031 27.4 -1.2 31 14-46 36-66 (91)
147 2heo_A Z-DNA binding protein 1 24.6 14 0.00049 24.5 -0.2 30 14-45 25-54 (67)
148 2fcj_A Small toprim domain pro 23.8 21 0.00073 26.9 0.6 74 200-277 26-102 (119)
149 3lfp_A CSP231I C protein; tran 23.8 13 0.00045 26.5 -0.6 16 15-30 15-30 (98)
150 2p7v_B Sigma-70, RNA polymeras 23.7 13 0.00046 24.4 -0.5 22 14-35 25-46 (68)
151 3nvt_A 3-deoxy-D-arabino-heptu 23.2 1.7E+02 0.0059 26.8 6.8 81 212-294 192-288 (385)
152 1je8_A Nitrate/nitrite respons 23.0 9 0.00031 26.6 -1.6 22 15-36 37-58 (82)
153 2frh_A SARA, staphylococcal ac 22.9 7.6 0.00026 29.4 -2.2 31 14-46 53-83 (127)
154 2re2_A Uncharacterized protein 22.7 57 0.002 25.0 3.0 38 104-147 65-102 (136)
155 1fse_A GERE; helix-turn-helix 22.6 9.2 0.00032 25.5 -1.6 22 15-36 27-48 (74)
156 2pg4_A Uncharacterized protein 22.4 5.2 0.00018 28.6 -3.1 31 14-46 30-61 (95)
157 1v4r_A Transcriptional repress 22.2 17 0.00057 26.2 -0.3 31 14-46 35-65 (102)
158 2l82_A Designed protein OR32; 22.1 1.7E+02 0.0057 21.4 5.1 41 194-234 71-111 (162)
159 2ofy_A Putative XRE-family tra 21.9 14 0.00049 25.4 -0.7 17 16-32 29-45 (86)
160 3v7e_A Ribosome-associated pro 21.1 1.1E+02 0.0037 21.0 3.9 33 200-232 27-59 (82)
161 1j9i_A GPNU1 DBD;, terminase s 21.0 19 0.00064 23.8 -0.2 19 14-32 2-20 (68)
162 2gk4_A Conserved hypothetical 20.9 78 0.0027 26.9 3.6 26 101-126 26-51 (232)
163 3e2i_A Thymidine kinase; Zn-bi 20.5 1.1E+02 0.0039 25.6 4.5 53 199-252 100-159 (219)
164 3h5n_A MCCB protein; ubiquitin 20.4 4.1E+02 0.014 23.7 8.8 34 198-231 206-239 (353)
165 1g2h_A Transcriptional regulat 20.2 24 0.00082 22.8 0.2 18 15-32 34-51 (61)
166 3r0a_A Putative transcriptiona 20.1 6.4 0.00022 29.8 -3.1 30 15-46 43-72 (123)
No 1
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=1.3e-52 Score=389.39 Aligned_cols=301 Identities=29% Similarity=0.497 Sum_probs=269.6
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCee-eeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETV-AAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~-~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gV 145 (377)
|++|+|+|++++|+++.++++|.+++.. ........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||
T Consensus 2 m~~v~viG~~~~D~~~~~~~~p~~g~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gv 81 (304)
T 3ry7_A 2 TNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKVAHI 81 (304)
T ss_dssp CCEEEEECCCEEEEEEECSSCCCTTCCCCCSSCCEEEEECHHHHHHHHHHHTTCEEEEECEEESSCTTHHHHHHHHHTTC
T ss_pred CCcEEEEccceeEEEEeccCCCCCCCceecccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCChHHHHHHHHHHHcCC
Confidence 4689999999999999999999999888 888889999999999999999999999999999999999999999999999
Q ss_pred CcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhC
Q 017101 146 RLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSA 225 (377)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (377)
+++++.+. ++.+|+.++++++++|+++++.+.+++....++.+. ...+.++.++++++++..+.+.+.++++.++++
T Consensus 82 ~~~~v~~~--~~~~T~~~~~~~~~~g~~~~~~~~ga~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~ 158 (304)
T 3ry7_A 82 DTSYIIKT--AEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVI-NAKDAIINADFVVAQLEVPIPAIISAFEIAKAH 158 (304)
T ss_dssp BCTTCEEE--SSSCCEEEEEEECSSCCEEEEEECGGGGGCCHHHHH-TTHHHHHTCSEEEEETTSCHHHHHHHHHHHHHT
T ss_pred cchhEEEc--CCCCCcEEEEEECCCCCEEEEEecCchhcCCHHHHH-HHHHHhccCCEEEEcCCCCHHHHHHHHHHHHHc
Confidence 99999887 778999999999989999998887765443332221 223568899999999888888899999999999
Q ss_pred CCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCee
Q 017101 226 GVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKP 305 (377)
Q Consensus 226 g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~ 305 (377)
++++++|++.. ......+++++|++++|++|++.++|....+.+++.++++.+++.|++.|+||+|++|++++.. ++.
T Consensus 159 ~~~v~~D~~~~-~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~-~~~ 236 (304)
T 3ry7_A 159 GVTTVLNPAPA-KALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATK-NQS 236 (304)
T ss_dssp TCEEEEECCSC-CCCCHHHHTTCSEECCBHHHHHHHHSCCCCSHHHHHHHHHHHHHTTCCEEEEECGGGCEEEECS-SCE
T ss_pred CCEEEEeCCcc-ccccHHHHHhCCEEecCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEEeCCCceEEEEC-Cee
Confidence 99999999875 3566789999999999999999999987777778889999999999999999999999987754 457
Q ss_pred EEeccCCCCcccCccCchHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHH
Q 017101 306 IKQSIIPAARVIDTTGAGDTFTASFAVGFVEG-KSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNL 373 (377)
Q Consensus 306 ~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g-~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~ 373 (377)
+++|++ +++++|||||||+|.|||+++|++| +++++|+++|+++|+++|++.|+.+++|+++|++++
T Consensus 237 ~~~~~~-~v~~vdttGAGDaf~a~~~~~l~~g~~~~~~a~~~A~~~aa~~~~~~G~~~~~p~~~ev~~~ 304 (304)
T 3ry7_A 237 QHIEAY-KVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEEVNQV 304 (304)
T ss_dssp EEECCS-SCCSSCCSSHHHHHHHHHHHHCCTTCTTHHHHHHHHHHHHHTTSCCCCTGGGCCCHHHHHTC
T ss_pred EEecCC-CcccCCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCccccCCCHHHHhhC
Confidence 788887 5789999999999999999999999 999999999999999999999999999999999864
No 2
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=100.00 E-value=1.5e-51 Score=383.15 Aligned_cols=304 Identities=32% Similarity=0.482 Sum_probs=268.5
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+|+|++++|++..++++|.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 4 ~~~v~viG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~N~A~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gv~ 83 (309)
T 1rkd_A 4 AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNID 83 (309)
T ss_dssp CCEEEEECCCEEEEEEECSSCCCTTCCCCCCCEEEEEECHHHHHHHHHHHHTCEEEEEEEEESSTTHHHHHHHHHTTTEE
T ss_pred CCeEEEECcceEeEEEecCCCCCCCCeeecCceeecCCCHHHHHHHHHHhCCCceEEEEEECCCHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999998888888889999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g 226 (377)
++++... ++.+|+.++++++++|+++++.+.+++....++.+. ...+.+..++++++++..+.+.+..+++.+++++
T Consensus 84 ~~~v~~~--~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g 160 (309)
T 1rkd_A 84 ITPVSVI--KGESTGVALIFVNGEGENVIGIHAGANAALSPALVE-AQRERIANASALLMQLESPLESVMAAAKIAHQNK 160 (309)
T ss_dssp CTTEEEE--TTCCCEEEEEEECTTSCEEEEEECGGGGGCCHHHHH-TTHHHHHHCSEEEECSSSCHHHHHHHHHHHHHTT
T ss_pred ccceEec--CCCCCceEEEEECCCCCeEEEEeCCchhcCCHHHHH-HHHHhcccCCEEEEeCCCCHHHHHHHHHHHHHcC
Confidence 9999887 777999999999988999988877664332222221 1224678899999998888888889999999999
Q ss_pred CcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeE
Q 017101 227 VPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPI 306 (377)
Q Consensus 227 ~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~ 306 (377)
+++++|++... .+...+++++|++++|++|++.|+|.+..+.+++.++++.+.+.|++.|+||+|++|++++.. ++.+
T Consensus 161 ~~v~~D~~~~~-~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~-~~~~ 238 (309)
T 1rkd_A 161 TIVALNPAPAR-ELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVN-GEGQ 238 (309)
T ss_dssp CEEEECCCSCC-CCCHHHHTTCSEECCCHHHHHHHHSCCCSSHHHHHHHHHHHHHTTCSEEEEECGGGCEEEEET-TEEE
T ss_pred CEEEEECCccc-cchHHHHhhCCEEEcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEECCCcEEEEeC-CceE
Confidence 99999998752 455778999999999999999999987666677888899999999999999999999977654 4567
Q ss_pred EeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 307 KQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 307 ~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
++|++ .++++||+||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.+++|+++++++++++
T Consensus 239 ~~~~~-~v~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~~~~~G~~~~~p~~~ev~~~~~~ 307 (309)
T 1rkd_A 239 RVPGF-RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDR 307 (309)
T ss_dssp EECCC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSGGGCCCHHHHHHHHHT
T ss_pred EcCCC-CCCcCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCccCCCCCHHHHHHHHhc
Confidence 78876 5789999999999999999999999999999999999999999999998889999999999864
No 3
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=100.00 E-value=4.5e-51 Score=383.55 Aligned_cols=303 Identities=30% Similarity=0.421 Sum_probs=265.2
Q ss_pred CCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCC
Q 017101 66 TPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (377)
Q Consensus 66 ~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gV 145 (377)
++++|+|+|++++|+++.++++|.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||
T Consensus 23 ~~~~vlviG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~~~L~~~Gv 102 (331)
T 2fv7_A 23 EVAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDI 102 (331)
T ss_dssp -CCSEEEECCCEEEEEEECSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHTTTE
T ss_pred ccCCEEEECcccEEEEEecCCCCCCCceEecCceEECcCCHHHHHHHHHHHCCCCeEEEEEECCChhHHHHHHHHHHcCC
Confidence 46789999999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred CcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhC
Q 017101 146 RLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSA 225 (377)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (377)
+++++... ++.+|+.++++++++|+++++.+.+++....++.+. ...+.+..++++++++..+.+.+..+++.+++.
T Consensus 103 ~~~~v~~~--~~~~T~~~~v~~~~~g~~~~~~~~ga~~~l~~~~~~-~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~ 179 (331)
T 2fv7_A 103 STEFTYQT--KDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLR-AAANVISRAKVMVCQLEITPATSLEALTMARRS 179 (331)
T ss_dssp ECTTEEEE--SSSCCEEEEEEECTTSCEEEEEECGGGGGCCHHHHH-HTHHHHHHCSEEEECSSSCHHHHHHHHHHHHHT
T ss_pred cceeeEec--CCCCCceEEEEECCCCCeEEEecCCccccCCHHHHH-HHHHhhccCCEEEEecCCCHHHHHHHHHHHHHc
Confidence 99999987 677999999999988999998887664332222221 122357889999999888888888999999999
Q ss_pred CCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCC-e
Q 017101 226 GVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGE-K 304 (377)
Q Consensus 226 g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~-~ 304 (377)
++++++|++.....+...+++++|++++|++|++.|+|....+.+++.++++.+.+.|++.|+||+|++|++++..++ +
T Consensus 180 g~~v~~Dp~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~VvvT~G~~G~~~~~~~~~~ 259 (331)
T 2fv7_A 180 GVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPE 259 (331)
T ss_dssp TCEEEECCCSCCTTCCTHHHHTCSEEEEEHHHHHHHHSSCCCSHHHHHHHHHHHHTTTCSEEEEECGGGCEEEEESSCCS
T ss_pred CCEEEEeCCcccccchHHHHhcCCEEEeCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEEECCCceEEEECCCCc
Confidence 999999998764456678999999999999999999997666667888889999999999999999999997776552 4
Q ss_pred eEEeccCCCCcccCccCchHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHH
Q 017101 305 PIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG--KSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLN 372 (377)
Q Consensus 305 ~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g--~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~ 372 (377)
.+++|++ .++++|||||||+|.|||+++|++| +++++|+++|+++|+.++++.|+.+++|+++++++
T Consensus 260 ~~~~~~~-~v~vvdttGAGDaf~a~~~~~l~~g~~~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~ 328 (331)
T 2fv7_A 260 PKHIPTE-KVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPL 328 (331)
T ss_dssp CEEECCC-CCCCSCCTTHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHTSSSGGGGCCCGGGSCG
T ss_pred eeEecCC-CCccCCCCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCCCCCccCCCCHHHHhh
Confidence 6778876 5789999999999999999999999 99999999999999999999999888999988754
No 4
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=100.00 E-value=7.3e-51 Score=381.67 Aligned_cols=304 Identities=21% Similarity=0.266 Sum_probs=262.1
Q ss_pred CCCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCC
Q 017101 65 NTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (377)
Q Consensus 65 ~~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~g 144 (377)
+++++|+|+|++++|++..+++.|.+++.... .....+||++.|+|++|++||.++.++|.+|+|..|+++++.|++.|
T Consensus 4 ~~~~~v~viG~~~vD~~~~~~~~~~~g~~~~~-~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~~g 82 (328)
T 3kzh_A 4 RKEPYLLVFGASVVDVFGFSKASYRPYNSTPG-HVKISFGGVCRNIAENMARVGVNTNFMSILGNDEHGKSIVEHSKKIG 82 (328)
T ss_dssp CCCCCEEEECCCEEEEEEEESSCCCTTSEEEE-EEEEEEECHHHHHHHHHHHTTCCEEEECEECSSHHHHHHHHHHHHHT
T ss_pred CCCCcEEEECcEEeeeeeccCCCCCCCCCceE-EEEEccCcHHHHHHHHHHHcCCCcEEEEEecCcHHHHHHHHHHHHcC
Confidence 45789999999999999999999988888776 77899999999999999999999999999999999999999999999
Q ss_pred CCcccEEeccCCCCCCceEEEEEecCCCeeEEEE-CCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHH
Q 017101 145 VRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIV-GGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAAR 223 (377)
Q Consensus 145 Vd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (377)
|+++++... ++.+|+.++++++++|++++... .+......++.+ +...+.++.++++++++..+ +.+..+++ ++
T Consensus 83 v~~~~v~~~--~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~-a~ 157 (328)
T 3kzh_A 83 YHMDDSMVI--EGGSTPTYLAILDENGEMVSAIADMKSIGAMNTDFI-DSKREIFENAEYTVLDSDNP-EIMEYLLK-NF 157 (328)
T ss_dssp EECTTCEEC--TTCCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHH-HHTHHHHHTCSEEEEESSCH-HHHHHHHH-HH
T ss_pred CCccceEEe--CCCCCeeEEEEEcCCCCEEEEEEchhhhhhCCHHHH-HHHHHhhccCCEEEEeCCcH-HHHHHHHH-Hh
Confidence 999998877 77789999999999999987543 332222111111 12235688999999998877 77777777 88
Q ss_pred hCCCcEEEcCCCCCC-CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeC
Q 017101 224 SAGVPVIFDAGGMDA-PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEG 302 (377)
Q Consensus 224 ~~g~~v~~D~~~~~~-~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 302 (377)
+.++++++|+.+... .....+++++|++++|++|++.++|.+..+.+++.++++.+.+.|++.|+||+|++|++++..+
T Consensus 158 ~~~~~v~~D~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 237 (328)
T 3kzh_A 158 KDKTNFILDPVSAEKASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGLGIKKVFISLDADGIFYNDGV 237 (328)
T ss_dssp TTTSEEEEECCSHHHHHTSTTTGGGCSEECCBHHHHHHHHTSCCCSHHHHHHHHHHHHHHTCCEEEEECGGGCEEEECSS
T ss_pred hcCCcEEEEeCCHHHHHHHHHHhcCCcEEeCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCEEEEeCC
Confidence 899999999975321 2345678999999999999999999887777888889999999999999999999999776544
Q ss_pred CeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 303 EKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 303 ~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
+.+++|++ +++++|||||||+|+|||+++|++|+++++|+++|+++|+++|++.|+.++.|+++++++++++
T Consensus 238 -~~~~~~~~-~v~vvdttGAGDaf~ag~~~~l~~g~~~~~a~~~A~a~aa~~v~~~G~~~~~~~~~~v~~~~~~ 309 (328)
T 3kzh_A 238 -SCGKIKAT-EVDVKNVTGAGDSFVAGLGYGYMNKMPIEDIVKFAMTMSNITISHEETIHPDMALDTVLAKLEK 309 (328)
T ss_dssp -CEEEEEES-SCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSSCTTCSHHHHHHHHHT
T ss_pred -ceEEecCC-CcccCCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHhhh
Confidence 46778876 5789999999999999999999999999999999999999999999999999999999999875
No 5
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=5.2e-50 Score=377.75 Aligned_cols=297 Identities=22% Similarity=0.292 Sum_probs=259.5
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+|+|++++|+++.++++|.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 29 ~~~i~viG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~i~~~L~~~GVd 108 (343)
T 2rbc_A 29 GKHVLCVGAAVLDTLFRVADMPKGEGKVLPYEVLQIAEGMASSAAYAVHRMGGRASLWGAVGDDETGTRILRDLSESGID 108 (343)
T ss_dssp CCEEEEESCCEEEEEEECSSCCCSSSCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHHTTEE
T ss_pred CCeEEEECcceEEEEeecCCCCCCCCeEeeeeeEEcCCcHHHHHHHHHHHcCCceEEEEEeCCCHHHHHHHHHHHHcCCc
Confidence 57899999999999999999998888888888889999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g 226 (377)
++++... ++.+|+.++++++++|+|+++.+.+++....++.+. .+.+..++++++++..+ +....+++.+++.+
T Consensus 109 ~~~v~~~--~~~~T~~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~---~~~l~~~~~v~~~~~~~-~~~~~~~~~a~~~g 182 (343)
T 2rbc_A 109 TSGMTVA--PGARSALSTIIIDNRGERLIVPFYDHRLHEKKRACT---PEDIALFDAVLVDVRWP-ELALDVLTVARALG 182 (343)
T ss_dssp CTTCEEE--TTCCCEEEEEEECTTSCEEEEEECCGGGGSSCCCCC---HHHHTTCSEEEECSSSH-HHHHHHHHHHHHTT
T ss_pred eeeEEEc--CCCCCceEEEEECCCCCEEEEEcCCCcccCChhHhc---HhhhCCCCEEEEcCCCH-HHHHHHHHHHHHCC
Confidence 9999887 777899999999989999988777765443333333 24678999999988665 56778889999999
Q ss_pred CcEEEcCCCCCCCChhh-hhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCC-CEEEEeeCCCCeEEEEeCC-
Q 017101 227 VPVIFDAGGMDAPIPQE-LLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGV-QQVLVKLGAKGSALFVEGE- 303 (377)
Q Consensus 227 ~~v~~D~~~~~~~~~~~-ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~-~~vvvT~G~~G~~~~~~~~- 303 (377)
+++++|+... .....+ +++++|++++|++|++.|+|.. ++.++++.+.+.|+ +.|+||+|++|++++..++
T Consensus 183 ~~v~~Dp~~~-~~~~~~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~~VvvT~G~~G~~~~~~~~~ 256 (343)
T 2rbc_A 183 KPAILDGDVA-PVETLEGLAPAATHIVFSEPAATRLTGLE-----TVKDMLPVLHARYPQTFIAVTAGPAGCWWTEADDP 256 (343)
T ss_dssp CCEEEEECSC-CHHHHHHHGGGCSEEEEEHHHHHHHHCCS-----SHHHHHHHHHHHSTTSEEEEECGGGCEEEECTTCC
T ss_pred CEEEEECCcc-ccccHHHHHhcCCEEEeCHHHHHHHcCCC-----CHHHHHHHHHHhCCCceEEEEECCcceEEEeCCCc
Confidence 9999999753 234455 8899999999999999999864 46677888888899 9999999999997765442
Q ss_pred eeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 304 KPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 304 ~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
+.+++|++ +++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.+++|+++++++++++
T Consensus 257 ~~~~~~~~-~v~vvDttGAGDaF~ag~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 328 (343)
T 2rbc_A 257 TVHFQTTM-QVEAVDTLAAGDIFHGTFALAMAEGMQSRAAVRLSSVAAALKCTVFGGRIGAPTREETEEAMRQ 328 (343)
T ss_dssp CEEEECCC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSGGGGCCCHHHHHHHHHH
T ss_pred eeEEecCC-CCccccCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCccCCCCHHHHHHHHHh
Confidence 56778876 5789999999999999999999999999999999999999999999998888999999998864
No 6
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=1.8e-49 Score=369.34 Aligned_cols=295 Identities=35% Similarity=0.513 Sum_probs=255.5
Q ss_pred CCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCC-ceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 68 PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHP-TYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 68 ~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~-v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
++|+|+|++++|+++.++++|.+++..........+||++.|+|+++++||.+ +.++|.+|+|.+|+++++.|++.||
T Consensus 15 ~~v~vvG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~i~~vG~D~~G~~l~~~L~~~gV- 93 (311)
T 1vm7_A 15 LVISVVGSSNIDIVLKVDHFTKPGETQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGNDDYSDLLIENYEKLGI- 93 (311)
T ss_dssp CCEEEECCCEEEEEEECSSCCCTTCEEECSEEEEEEECHHHHHHHHHHHHHSSCEEEEEEECSSHHHHHHHHHHHHTTE-
T ss_pred CCEEEECcceeeEEEecccCCCCCceEecCeeeecCCCHHHHHHHHHHHcCCCceEEEEEECCChHHHHHHHHHHHCCC-
Confidence 68999999999999999999999998888888999999999999999999999 9999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g 226 (377)
++.+. ++.+|+.++++++++|+++++.+.+++....++.+. .+.+..++++++++..+.+.... .+++.+
T Consensus 94 --~v~~~--~~~~T~~~~~~~~~~g~~~~~~~~ga~~~l~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~---~a~~~~ 163 (311)
T 1vm7_A 94 --TGYIR--VSLPTGRAFIEVDKTGQNRIIIFPGANAELKKELID---WNTLSESDILLLQNEIPFETTLE---CAKRFN 163 (311)
T ss_dssp --EEEEE--CSSCCCEEEEEECTTSCEEEEEECGGGGGCCGGGCC---HHHHTTCSEEEECSSSCHHHHHH---HHHHCC
T ss_pred --EEEEc--CCCCCeEEEEEECCCCCEEEEEecCccccCCHHHhC---hhhcccCCEEEEeCCCCHHHHHH---HHHHcC
Confidence 67765 667999999999988999998887765443333333 45678999999998887654433 378889
Q ss_pred CcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeE
Q 017101 227 VPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPI 306 (377)
Q Consensus 227 ~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~ 306 (377)
+++++|++.. ......+++++|++++|++|++.|+|.+..+.+++.++++.+.+.|++.|++|+|++|++++..+ +.+
T Consensus 164 ~~v~~Dp~~~-~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~-~~~ 241 (311)
T 1vm7_A 164 GIVIFDPAPA-QGINEEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKN-EKK 241 (311)
T ss_dssp SEEEECCCSC-TTCCGGGGGGCSEECCBHHHHHHHHHHHHSCCCCHHHHHHHHHHTTCSEEEEECGGGCEEEEETT-EEE
T ss_pred CEEEEeCcch-hhhhHHHHhhCCEEeCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEEECCCCeEEEeCC-ceE
Confidence 9999999864 34567889999999999999999987532223456778888889999999999999999776544 567
Q ss_pred EeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 307 KQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 307 ~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
++|++ .++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.+++|+++|+++++++
T Consensus 242 ~~~~~-~v~~vdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 310 (311)
T 1vm7_A 242 HFPTF-KVKAVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAAAISVTRLGAQSSIPAREEVEAFLKN 310 (311)
T ss_dssp EECCC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSSGGGCCCHHHHHHHHHT
T ss_pred EecCC-CcccCCCCccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhCcCCccccCCCHHHHHHHHhc
Confidence 78876 5789999999999999999999999999999999999999999999998889999999999875
No 7
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=100.00 E-value=2.8e-50 Score=372.88 Aligned_cols=285 Identities=26% Similarity=0.345 Sum_probs=251.4
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
.|+|+|+|++++|+++.++++|.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 2 ~~~i~viG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~i~~vG~D~~g~~i~~~l~~~gv~ 81 (299)
T 3ikh_A 2 SLRVYVTGNITVDETWSIPDIPKKGASIHGVKVSQDIGGKGANQAIILSRCGIETRLIAATGNDSNGAWIRQQIKNEPLM 81 (299)
T ss_dssp CCCEEEECCCEEEEEEECSSCCCTTCEEECEEEEEEEECHHHHHHHHHHHTTCCEEEECCCCSSHHHHHHHHHGGGSSCE
T ss_pred CceEEEECceEEEEEEecCCCCCCCCeEEeeeeeeccCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHHHHHHHHcCCc
Confidence 37899999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g 226 (377)
++++. . ++.+|+.++++++++|+|+++.+.+++....++.+. ...+.+..++++++++..+.+.+.++++.+++++
T Consensus 82 ~~~v~-~--~~~~T~~~~~~~~~~g~~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a~~~g 157 (299)
T 3ikh_A 82 LLPDG-H--FNQHSDTSIILNSADGDNAIITTTAAADTFSLDEMI-PHMADAVAGDILLQQGNFSLDKTRALFQYARSRG 157 (299)
T ss_dssp EESSS-C--CSSCCEEEEEECSSSCSCEEEEECHHHHHCCHHHHG-GGGTTCCTTCEEEECSCSCHHHHHHHHHHHHHTT
T ss_pred eeeeE-e--cCCCCcEEEEEEcCCCCeEEEEeCCccccCCHHHHH-HHHhhhccCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 99985 4 567899999999989999988876654332222221 1124567899999999989888999999999999
Q ss_pred CcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeE
Q 017101 227 VPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPI 306 (377)
Q Consensus 227 ~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~ 306 (377)
+++++|++... .....+++++|++++|++|++.|++ .|++.|+||+|++|++++.. ++.+
T Consensus 158 ~~v~~D~~~~~-~~~~~ll~~~dil~~N~~E~~~l~g------------------~g~~~vvvt~G~~G~~~~~~-~~~~ 217 (299)
T 3ikh_A 158 MTTVFNPSPVN-PDFCHLWPLIDIAVVNESEAELLQP------------------YGVKTLVITQGAAGAWLVQE-GQRQ 217 (299)
T ss_dssp CEEEECCCSCC-GGGGGCGGGCSEEEEEHHHHHHHCC------------------CSCSEEEEECGGGCEEEECS-SCEE
T ss_pred CEEEEccccch-hhHHHHHhhCCEEEecHHHHHHHhc------------------CCCCEEEEEECCCceEEEeC-CceE
Confidence 99999998753 4567889999999999999999987 48899999999999977654 4567
Q ss_pred EeccCCCCcccCccCchHHHHH-HHHHHHhCCCCHHH-HHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 307 KQSIIPAARVIDTTGAGDTFTA-SFAVGFVEGKSREE-CLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 307 ~~~~~~~~~vvdttGAGDaF~a-g~l~~l~~g~~l~~-al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
++|++ +++++|||||||+|.| ||+++|++|+++++ |+++|+++|+++|++.|+.+++|+++|+++++++
T Consensus 218 ~~~~~-~v~vvDttGAGDaf~a~~~~~~l~~g~~~~~~a~~~a~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 288 (299)
T 3ikh_A 218 FCPAV-PAEALDTTGAGDTFLAVMLASALLRGVAPDALALAHASRAAAITVSRRGTLSAFPGSRELAALLTT 288 (299)
T ss_dssp EECCC-CCCCSCCTTHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHSSSSTTTSCCHHHHHHHHC-
T ss_pred EeCCC-CCccCCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCCcccccCCCHHHHHHHHHh
Confidence 88887 5789999999999999 99999999999999 9999999999999999999999999999999864
No 8
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=2.3e-49 Score=369.73 Aligned_cols=300 Identities=26% Similarity=0.270 Sum_probs=250.3
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|++|+|+|++++|++..+++.|.++...... ....+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 3 m~~i~viG~~~~D~~~~~~~~~~~~~~~~~~-~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~~~L~~~gV~ 81 (317)
T 2nwh_A 3 MKKILVLGGAHIDRRGMIETETAPGASNPGS-WMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQAGVE 81 (317)
T ss_dssp CCEEEEESCCEEEEEEEESSSCCTTSCCCEE-EEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHHTTCE
T ss_pred CCeEEEECchheEEeeccCCCCCCCCCceEe-EEEeCCcHHHHHHHHHHhcCCCcEEEEeecCCchHHHHHHHHHHcCCC
Confidence 5689999999999999998878877776655 778999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCC-CCCCCCcCcCchhH--HHHhhcCEEEEccCCCHHHHHHHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT-NMSCWPEKFGDEDL--EVVKKAGIVLLQREIPDSVNIQVAKAAR 223 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (377)
+++ ... ++.+|+.++++++++|++++.+..+. +....+..+. ... +.++.++++++++..+.+.+..+++.++
T Consensus 82 ~~~-~~~--~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~ 157 (317)
T 2nwh_A 82 DTP-FTF--LDRRTPSYTAILERDGNLVIALADMDLYKLFTPRRLK-VRAVREAIIASDFLLCDANLPEDTLTALGLIAR 157 (317)
T ss_dssp ECC-EEE--TTSCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHT-SHHHHHHHHHCSEEEEETTSCHHHHHHHHHHHH
T ss_pred CCC-ccc--CCCCCceEEEEEcCCCCEEEEEcchHHHhhCCHHHhh-hhhhhhHhccCCEEEEeCCCCHHHHHHHHHHHH
Confidence 999 555 66789999999998999987665532 2222212121 112 5678899999998888888899999999
Q ss_pred hCCCcEEEcCCCCC-CCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeC
Q 017101 224 SAGVPVIFDAGGMD-APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEG 302 (377)
Q Consensus 224 ~~g~~v~~D~~~~~-~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 302 (377)
+.++++++|+.... ......+++++|++++|++|++.|+|.+ .+++.++++.+.+.|++.|+||+|++|++++..+
T Consensus 158 ~~g~~v~~Dp~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~---~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 234 (317)
T 2nwh_A 158 ACEKPLAAIAISPAKAVKLKAALGDIDILFMNEAEARALTGET---AENVRDWPNILRKAGLSGGVVTRGASEVVAFNGT 234 (317)
T ss_dssp HTTCCEEEECCSHHHHGGGTTTGGGCSEEEEEHHHHHHHHC--------CTTHHHHHHHTTCCCEEEEETTTEEEEECSS
T ss_pred hcCCeEEEeCCCHHHHHHHHHHhhhCeEecCCHHHHHHHhCCC---hhHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCC
Confidence 99999999997521 1234567899999999999999999862 2345567778888899999999999999776555
Q ss_pred CeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHh
Q 017101 303 EKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 303 ~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
+..+++|++ .++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.+.+|++++++++.+
T Consensus 235 ~~~~~~~~~-~v~~vdt~GAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~~~~~~~~~v~~~~~ 306 (317)
T 2nwh_A 235 EKAILHPPL-IREVKDVTGAGDAMASGYLAAIAEGKTIREALRQGAAAAAITVQSSFATSQDLSKDSVEAMLG 306 (317)
T ss_dssp CEEEECCCC-SSSCSCCCCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHSSTTCCGGGCCHHHHHHHHT
T ss_pred CceEEeCCC-CccccCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHhHhh
Confidence 445778876 578999999999999999999999999999999999999999999999988899999998543
No 9
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=100.00 E-value=2.6e-49 Score=367.96 Aligned_cols=280 Identities=29% Similarity=0.417 Sum_probs=250.4
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+|+|++++|+++.++++|.+++..........+||++.|+|++|++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 19 m~~i~viG~~~iD~~~~v~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~gV~ 98 (310)
T 3go6_A 19 APRVCVVGSVNMDLTFVVDALPRPGETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDPAAAQLRAHLRANAVG 98 (310)
T ss_dssp CCEEEEECCCEEEEEEECSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEECSSHHHHHHHHHHHHTTCB
T ss_pred cCCEEEECCceEEEEEecCCCCCCCCeEEecceeecCCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHHHHHHHHcCCc
Confidence 67899999999999999999999999888888899999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g 226 (377)
++++... +.+|+.++++++++|+++++.+.+++.... ++ .+.+..++++++++..+.+.+.++++.+++.+
T Consensus 99 ~~~v~~~---~~~T~~~~~~~~~~g~~~~~~~~ga~~~l~--~~----~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~g 169 (310)
T 3go6_A 99 LDRTVTV---PGPSGTAIIVVDASAENTVLVAPGANAHLT--PV----PSAVANCDVLLTQLEIPVATALAAARAAQSAD 169 (310)
T ss_dssp CTTCEEC---SSCCEEEEEEECTTSCEEEEEECGGGGGCC--CC----TTTTTTCSEEEECSSSCHHHHHHHHHHHHHTT
T ss_pred cceeEec---CCCCCEEEEEEcCCCCEEEEecCChhhhHH--HH----HHHhhcCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 9999754 458999999999999999988877654322 22 35678899999998888888999999999999
Q ss_pred CcEEEcCCCCCCC--ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCe
Q 017101 227 VPVIFDAGGMDAP--IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEK 304 (377)
Q Consensus 227 ~~v~~D~~~~~~~--~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~ 304 (377)
+++++|++..... ....+++++|++++|++|++.|++. ++.|+||+|++|++++..+ +
T Consensus 170 ~~v~~D~~~~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~-------------------~~~vvvt~G~~Ga~~~~~~-~ 229 (310)
T 3go6_A 170 AVVMVNASPAGQDRSSLQDLAAIADVVIANEHEANDWPSP-------------------PTHFVITLGVRGARYVGAD-G 229 (310)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHCSEEEEEHHHHHHSSSC-------------------CSEEEEECGGGCEEEEETT-E
T ss_pred CEEEEcCCccccchHHHHHHHhhCCEEEeCHHHHHHHhCC-------------------CCEEEEEECCCCEEEEECC-c
Confidence 9999999865321 2237899999999999999999873 6789999999999777554 6
Q ss_pred eEEeccCCCCcccCccCchHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 305 PIKQSIIPAARVIDTTGAGDTFTASFAVGFVE----GKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 305 ~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~----g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
.+++|++ +++++||+||||+|.|||+++|++ |+++++|+++|+++|+++|++.|+.+++|+++|+++++++
T Consensus 230 ~~~~~~~-~v~vvdttGAGDaF~ag~~~~l~~~~~~g~~l~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 304 (310)
T 3go6_A 230 VFEVPAP-TVTPVDTAGAGDVFAGVLAANWPRNPGSPAERLRALRRACAAGALATLVSGVGDCAPAAAAIDAALRA 304 (310)
T ss_dssp EEEECCC-CCCCSCCTTHHHHHHHHHHHHCCSSSCCHHHHHHHHHHHHHHHHHHTTSSCSTTCCCCHHHHHHHHHT
T ss_pred eEEeCCC-CCCcCcCCCchHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHh
Confidence 7888887 578999999999999999999999 9999999999999999999999999999999999999875
No 10
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=100.00 E-value=5.1e-49 Score=364.94 Aligned_cols=290 Identities=24% Similarity=0.331 Sum_probs=248.7
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|++|+++|++++|++..++++|.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 5 m~~i~viG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gv~ 84 (302)
T 2c4e_A 5 MEKITCVGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCVGYDFKNSGYERYLKNLDIN 84 (302)
T ss_dssp EEEEEEESCCEEEEEEECSSCCCTTCCCCCSCEEEEEECHHHHHHHHHHHTTCEEEEECEECTTTTTSHHHHHHHHTTCB
T ss_pred cCcEEEECceeEEEEecccccCCCCceeeecceeecCCCHHHHHHHHHHHCCCceEEEEEEeCCCchHHHHHHHHHcCCc
Confidence 45899999999999999999999988888888889999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCC
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g 226 (377)
++++... ++.+|+.++++++++|+++++.+.+++....++.+.. ..++++++++..+ +....+++.+++++
T Consensus 85 ~~~~~~~--~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~-~~~~~~~~~a~~~g 155 (302)
T 2c4e_A 85 ISKLYYS--EEEETPKAWIFTDKDNNQITFFLWGAAKHYKELNPPN------FNTEIVHIATGDP-EFNLKCAKKAYGNN 155 (302)
T ss_dssp CTTCEEC--SSSCCCEEEEEECSSCCEECCEECGGGGGGGGCCCCC------CCEEEEEECSSCH-HHHHHHHHHHBTTB
T ss_pred ccceEee--CCCCCceEEEEECCCCCEEEEEeCChhhhCCHhhcCc------ccCCEEEEeCCCc-HHHHHHHHHHHhcC
Confidence 9998876 7778999999998899999888777554333333321 6789999987665 77888899999999
Q ss_pred CcEEEcCCCCC----CCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeC
Q 017101 227 VPVIFDAGGMD----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEG 302 (377)
Q Consensus 227 ~~v~~D~~~~~----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 302 (377)
++++|++... .....++++++|++++|++|++.+++....+. . .+++. ++.|+||+|++|++++..+
T Consensus 156 -~v~~D~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~-----~--~l~~~-~~~vvvt~G~~G~~~~~~~ 226 (302)
T 2c4e_A 156 -LVSFDPGQDLPQYSKEMLLEIIEHTNFLFMNKHEFERASNLLNFEI-----D--DYLER-VDALIVTKGSKGSVIYTKD 226 (302)
T ss_dssp -EEEECCGGGGGGCCHHHHHHHHHTCSEEEEEHHHHHHHHHHHTCCH-----H--HHHTT-CSEEEEECGGGCEEEECSS
T ss_pred -CEEEeCchhhhhhhHHHHHHHHhcCCEEEcCHHHHHHHhCCCCccH-----H--HHHhc-CCEEEEEECCCceEEEeCC
Confidence 9999998531 12345678999999999999999987543221 1 56666 8999999999999777544
Q ss_pred CeeEEeccCCCCc-ccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 303 EKPIKQSIIPAAR-VIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 303 ~~~~~~~~~~~~~-vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
+.+++|++ .++ ++||+||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.+++|+++++++++++
T Consensus 227 -~~~~~~~~-~v~~~vdt~GAGDaf~a~~~~~l~~g~~~~~a~~~a~~~aa~~~~~~G~~~~~p~~~ev~~~~~~ 299 (302)
T 2c4e_A 227 -KKIEIPCI-KAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGLIGAATASFVVEAKGCQTNLPTWDKVVERLEK 299 (302)
T ss_dssp -CEEEECCC-CCSCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSSSTTCCCHHHHHHHHHH
T ss_pred -cEEEeCCc-cCCcCCcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccccccccCCCHHHHHHHHHh
Confidence 46778876 566 9999999999999999999999999999999999999999999998889999999999875
No 11
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A
Probab=100.00 E-value=5e-48 Score=362.70 Aligned_cols=295 Identities=18% Similarity=0.225 Sum_probs=240.9
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|++|+|+|++++|++... |.++..........++||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 3 m~~i~viG~~~~D~~~~~---~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gv~ 79 (330)
T 3iq0_A 3 LSKVFTIGEILVEIMASK---IGQPFDQPGIWNGPYPSGAPAIFIDQVTRLGVPCGIISCVGNDGFGDINIHRLAADGVD 79 (330)
T ss_dssp -CEEEEESCCEEEEEEEE---ETCCSSSCEEEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHHTTCB
T ss_pred CCCEEEEcceeEEEeccC---CCCCccccccccCcCCCCHHHHHHHHHHHCCCcEEEEEEeCCChHHHHHHHHHHHcCCC
Confidence 568999999999999752 22222222222357899999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEEC-C-CCCCCCCcCcCchhHHHHhhcCEEEEccCCC-----HHHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG-G-TNMSCWPEKFGDEDLEVVKKAGIVLLQREIP-----DSVNIQVA 219 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~-~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~ 219 (377)
++++.+. ++.+|+.+++.++++|++++.++. + +.....++.+.. ..+..++++++++..+ .+.+.+++
T Consensus 80 ~~~v~~~--~~~~T~~~~i~~~~~g~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~v~~sg~~~~~~~~~~~~~~~~ 154 (330)
T 3iq0_A 80 IRGISVL--PLEATGSAFVTYHNSGDRDFIFNIKNAACGKLSAQHVDE---NILKDCTHFHIMGSSLFSFHMVDAVKKAV 154 (330)
T ss_dssp CTTEEEE--TTSCCEEEEEEECC---CEEEEECTTSGGGGCCGGGCCG---GGGTTEEEEEEEGGGCSSHHHHHHHHHHH
T ss_pred eeeEEEc--CCCCceEEEEEECCCCCeeEEEeccCChhhhCCHhhCCH---hHhccCCEEEEechhhcCcchHHHHHHHH
Confidence 9999987 778999999999988999654443 2 222223333332 3678899999987543 24567888
Q ss_pred HHHHhCCCcEEEcCCCCCCC--------ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEee
Q 017101 220 KAARSAGVPVIFDAGGMDAP--------IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKL 291 (377)
Q Consensus 220 ~~a~~~g~~v~~D~~~~~~~--------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~ 291 (377)
+.++++++++++|++..... ...++++++|+++||++|++.++|.. ++.++++.+.+.|++.|+||+
T Consensus 155 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l~~~g~~~vvvT~ 229 (330)
T 3iq0_A 155 TIVKANGGVISFDPNIRKEMLDIPEMRDALHFVLELTDIYMPSEGEVLLLSPHS-----TPERAIAGFLEEGVKEVIVKR 229 (330)
T ss_dssp HHHHHTTCEEEEECCCCGGGGGSHHHHHHHHHHHHTCSEECCBGGGTTTTCSCS-----SHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHcCCEEEEcCCCCccccCcHHHHHHHHHHHhhCCEEecCHHHHHHHhCCC-----CHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999865321 23467889999999999999999863 466778888888999999999
Q ss_pred CCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHH
Q 017101 292 GAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVL 371 (377)
Q Consensus 292 G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~ 371 (377)
|++|++++..+ +.+++|++ +++++|||||||+|+|||+++|++|+++++|+++|+++|+++|++.|+.+++|+++|++
T Consensus 230 G~~G~~~~~~~-~~~~~~~~-~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~ 307 (330)
T 3iq0_A 230 GNQGASYYSAN-EQFHVESY-PVEEVDPTGAGDCFGGAWIACRQLGFDAHRALQYANACGALAVTRRGPMEGTSRLMEIE 307 (330)
T ss_dssp GGGCEEEECSS-CEEEECCC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCSSSTTCCCHHHHH
T ss_pred CCCceEEEECC-ceEEecCC-CCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHHH
Confidence 99999877554 56788887 57899999999999999999999999999999999999999999999998999999999
Q ss_pred HHHhh
Q 017101 372 NLLQY 376 (377)
Q Consensus 372 ~~l~~ 376 (377)
+++++
T Consensus 308 ~~~~~ 312 (330)
T 3iq0_A 308 TFIQR 312 (330)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 12
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=100.00 E-value=8.3e-49 Score=369.23 Aligned_cols=296 Identities=25% Similarity=0.278 Sum_probs=235.5
Q ss_pred CCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCC
Q 017101 66 TPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (377)
Q Consensus 66 ~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gV 145 (377)
++++|+|+|++++|++...++.|.+ .......+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||
T Consensus 3 ~~~~v~viG~~~iD~~~~~~~~~~~-----~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~l~~~l~~~gV 77 (338)
T 3ljs_A 3 LKKTILCFGEALIDMLAQPLVKKGM-----PRAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDFLFDSFAEAGV 77 (338)
T ss_dssp -CCEEEEESCCEEEEEECCCSSTTS-----CCCEEEEEECHHHHHHHHHHHHTCCEEEESEEESSHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEChhhhheeccCCCCccc-----hhceeecCCChHHHHHHHHHhCCCCEEEEeeccCCHHHHHHHHHHHHcCC
Confidence 4689999999999999988877543 45677899999999999999999999999999999999999999999999
Q ss_pred CcccEEeccCCCCCCceEEEEEecCCCeeEEEEC--CCCCCCCCcCcCchhHHHHhhcCEEEEccCC-----CHHHHHHH
Q 017101 146 RLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG--GTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQV 218 (377)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~ 218 (377)
+++++.+. ++.+|+.+++.++++|+|++.++. +++....++.+.. +.+..++++++++.. +.+.+.++
T Consensus 78 ~~~~v~~~--~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (338)
T 3ljs_A 78 VTDGIVRT--STAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQD---ASFSDALIFHACSNSMTDADIAEVTFEG 152 (338)
T ss_dssp BCTTCEEE--SSSCCCEEEEECCSTTCCEEEEECSSCGGGGCCGGGCCH---HHHHTEEEEEEEGGGGSSHHHHHHHHHH
T ss_pred CceeEEEc--CCCCceEEEEEECCCCCeEEEEeCCCChhHhCCHhhcCH---hHhcCCCEEEECChHhcCchHHHHHHHH
Confidence 99999987 778999999999989999987664 4443333344432 457889999987532 23567788
Q ss_pred HHHHHhCCCcEEEcCCCCC---------CCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 017101 219 AKAARSAGVPVIFDAGGMD---------APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLV 289 (377)
Q Consensus 219 ~~~a~~~g~~v~~D~~~~~---------~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvv 289 (377)
++.++++|+++++|++.+. .....++++++|++++|++|++.|+|....+. .++++.+++.|++.|+|
T Consensus 153 ~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~---~~~~~~l~~~g~~~vvv 229 (338)
T 3ljs_A 153 MRRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADA---NAVIQQLWQGRAQLLLV 229 (338)
T ss_dssp HHHHHHTTCEEEEECCCCGGGSCTTCCTHHHHHHHHHTCSEEEEEHHHHHHHHHHHTSCH---HHHHHHHTTTTCCEEEE
T ss_pred HHHHHHcCCEEEEECCCChhhcCCHHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCChhH---HHHHHHHHhcCCCEEEE
Confidence 9999999999999997432 11245678899999999999999987543222 23677888889999999
Q ss_pred eeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCC--------------CCHHHHHHHHHHHHHHHh
Q 017101 290 KLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG--------------KSREECLRFAAAAASLCV 355 (377)
Q Consensus 290 T~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g--------------~~l~~al~~a~~aAa~~~ 355 (377)
|+|++|++++..+ +.+++|++ .++++|||||||+|+|||+++|++| +++++|+++|+++|+++|
T Consensus 230 T~G~~G~~~~~~~-~~~~~~~~-~v~vvDttGAGDaF~a~~~~~l~~g~~~~~~~~~~~~~~~~l~~al~~A~~~aa~~v 307 (338)
T 3ljs_A 230 TDAAGPVHWYTRT-AGGEVPTF-RVQVQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAV 307 (338)
T ss_dssp EETTEEEEEEESS-CEEEECC------------CHHHHHHHHHHHHHHCSSTHHHHHHHTCHHHHHHHHHHHHHHHGGGC
T ss_pred eeCCCceEEEECC-ceEEeCCC-CCccCCCCCccHHHHHHHHHHHHhCCCcccchhccccChHHHHHHHHHHHHHHHHHh
Confidence 9999999877654 56788886 5789999999999999999999999 899999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHhh
Q 017101 356 QVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 356 ~~~G~~~~~p~~e~i~~~l~~ 376 (377)
++.|+.+++|+++|+++++++
T Consensus 308 ~~~Ga~~~~p~~~ev~~~~~~ 328 (338)
T 3ljs_A 308 TRQGAFTAMPMLSEVLSLIQE 328 (338)
T ss_dssp ----CCCCTTHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHhh
Confidence 999999999999999999864
No 13
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=100.00 E-value=1.6e-47 Score=357.62 Aligned_cols=293 Identities=19% Similarity=0.248 Sum_probs=243.5
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+|+|++++|++...+..|.. ........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 8 ~~~v~~iG~~~~D~~~~~~~~p~~----~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gv~ 83 (319)
T 3pl2_A 8 THEVLAIGRLGVDIYPLQSGVGLA----DVQSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFGEYLLAELERLGVD 83 (319)
T ss_dssp CCSEEEESCCEEEECBSSSSCCGG----GCCCBCCEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHHTTEE
T ss_pred CCCEEEEChhheeeecccCCCCcc----ccceeeecCCCcHHHHHHHHHHCCCceEEEEEeCCCHHHHHHHHHHHHcCCc
Confidence 579999999999999877665532 3456678999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCC---CCCCCCcCcCchhHHHHhhcCEEEEccCC-----CHHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT---NMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQV 218 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~ 218 (377)
++++.+. ++.+|+.+++.++.+|++++..+.+. +....++.+. .+.+..++++++++.. +.+....+
T Consensus 84 ~~~v~~~--~~~~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 158 (319)
T 3pl2_A 84 NQYVATD--QTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVS---LDDVREADILWFTLTGFSEEPSRGTHREI 158 (319)
T ss_dssp CTTEEEE--SSSCCCEEEECCBTTTBCCEEEECCSCCGGGGCCGGGSC---HHHHHHCSEEEEEGGGGSSTTHHHHHHHH
T ss_pred cccEEec--CCCCceEEEEEEcCCCCeeEEEecCCCcccccCChhhCC---HHHhccCCEEEEecccccCchhHHHHHHH
Confidence 9999887 77899999998888888888777542 2222223332 3678899999997632 22345566
Q ss_pred HHHHHhCCCcEEEcCCCCCC---------CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 017101 219 AKAARSAGVPVIFDAGGMDA---------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLV 289 (377)
Q Consensus 219 ~~~a~~~g~~v~~D~~~~~~---------~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvv 289 (377)
++.+++ +.++++|++.+.. .....+++++|++++|++|++.++|.. +..++++.++++|++.|+|
T Consensus 159 ~~~~~~-~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l~~~g~~~vvv 232 (319)
T 3pl2_A 159 LTTRAN-RRHTIFDLDYRPMFWESPEEATKQAEWALQHSTVAVGNKEECEIAVGET-----EPERAGRALLERGVELAIV 232 (319)
T ss_dssp HHHHTT-CSCEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEECHHHHHHHHSCC-----SHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHH-CCcEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEEcCHHHHHHHcCCC-----CHHHHHHHHHhcCCCEEEE
Confidence 666655 6778999975432 123578899999999999999999864 4567788888899999999
Q ss_pred eeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHH
Q 017101 290 KLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKS 369 (377)
Q Consensus 290 T~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~ 369 (377)
|+|++|++++..+ +.+++|++ +++++|||||||+|+|||+++|++|+++++|+++|+++|++++++.|+.+++|+++|
T Consensus 233 t~G~~G~~~~~~~-~~~~~~~~-~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~e 310 (319)
T 3pl2_A 233 KQGPKGVMAMTKD-ETVEVPPF-FVDVINGLGAGDAFGGALCHGLLSEWPLEKVLRFANTAGALVASRLECSTAMPTTDE 310 (319)
T ss_dssp EEETTEEEEECSS-CEEEECCC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSCSGGGCCCHHH
T ss_pred EECCCCeEEEECC-ceEEeCCc-ccCCCCCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCcCCCCCHHH
Confidence 9999999777554 56788887 578999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHhh
Q 017101 370 VLNLLQY 376 (377)
Q Consensus 370 i~~~l~~ 376 (377)
+++++++
T Consensus 311 v~~~l~~ 317 (319)
T 3pl2_A 311 VEASLNQ 317 (319)
T ss_dssp HHHHCC-
T ss_pred HHHHHhc
Confidence 9999864
No 14
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=100.00 E-value=2.5e-47 Score=360.34 Aligned_cols=297 Identities=16% Similarity=0.170 Sum_probs=246.1
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+|+|++++|++. |.+++..........+||++.|+|++|++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 2 ~~~v~viG~~~~D~~~-----~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gv~ 76 (346)
T 3ktn_A 2 SLKIAAFGEVMLRFTP-----PEYLMLEQTEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRLGEAGKAALRKLGIS 76 (346)
T ss_dssp CCEEEEECCCEEEEEC-----STTCCTTTCSCCEEEEECHHHHHHHHHHHTTCEEEEEEEECSSHHHHHHHHHHHHTTCB
T ss_pred CCcEEEeChhhhhhcC-----CCCCcccccceeEEeccCHHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHcCCc
Confidence 4689999999999884 33456666778889999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEE-CC---CCCCCCCcCcCchhHHHHhhcCEEEEccCCC---H---HHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIV-GG---TNMSCWPEKFGDEDLEVVKKAGIVLLQREIP---D---SVNI 216 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~-~~---~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~---~---~~~~ 216 (377)
++++... +.+|+.+++..+.+++++++.+ .+ +.....++.+. ..+.+..++++++++..+ + +.+.
T Consensus 77 ~~~v~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~--~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ 151 (346)
T 3ktn_A 77 DQWVGEK---GDHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYD--FEAFLAEVDMVHICGISLSLTEKTRDAAL 151 (346)
T ss_dssp CTTEEEC---CSCCEEEEEECCBTTBCCEEEECCCTTSTTTTCCGGGSC--HHHHHTTCSEEEECTHHHHHCHHHHHHHH
T ss_pred ceEEEeC---CCceEEEEEEecCCCCCceEEecCCCCChhhhCChhhcC--hHHHhCCCCEEEEeCccccCCHHHHHHHH
Confidence 9999874 4589999888876667677776 32 22222223332 235688999999987542 2 5677
Q ss_pred HHHHHHHhCCCcEEEcCCCCCC-----------CChhhhhccCceeccCHHHHhhccCCC-CC---CHHHHHHHHHHHHh
Q 017101 217 QVAKAARSAGVPVIFDAGGMDA-----------PIPQELLNFIDILSPNESELGRLTGMP-TD---SYEQISEAVVKCHK 281 (377)
Q Consensus 217 ~~~~~a~~~g~~v~~D~~~~~~-----------~~~~~ll~~~dvl~~N~~E~~~l~g~~-~~---~~~~~~~~~~~l~~ 281 (377)
++++.++++|+++++|++.+.. ....++++++|+++||++|++.|+|.. .. +.+++.++++.+.+
T Consensus 152 ~~~~~a~~~g~~v~~D~~~r~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~~~l~~ 231 (346)
T 3ktn_A 152 ILAQKAHAYQKKVCFDFNYRPSLNTANSALFMRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFMS 231 (346)
T ss_dssp HHHHHHHHTTCEEEEECCCCGGGCCHHHHHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEeCCCChHHcCCccHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCCCccccchHHHHHHHHHHHH
Confidence 8899999999999999975422 224568899999999999999999876 32 34577888888887
Q ss_pred c-CCCEEEEeeCCCC-------eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017101 282 M-GVQQVLVKLGAKG-------SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASL 353 (377)
Q Consensus 282 ~-g~~~vvvT~G~~G-------~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~ 353 (377)
. |++.|+||+|++| ++++. +++.+++|++ .++++|||||||+|+|||+++|++|+++++|+++|+++|++
T Consensus 232 ~~g~~~vvvT~G~~G~~~~~~g~~~~~-~~~~~~~~~~-~v~vvdttGAGDaF~ag~~~~l~~g~~l~~a~~~A~a~aa~ 309 (346)
T 3ktn_A 232 QYNLEWFAGTTRSHSQNQNYLSGYLYT-QNEYQQSEKR-PLLNLDRIGAGDAYAAGILYGYSQNWSLEKAVTFATVNGVL 309 (346)
T ss_dssp HHTCSEEEEEEEEECSSCEEEEEEEEC-SSCEEECCCE-ECCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEecCccccccCcceEEEEE-CCceEEeCCC-ccccCCCCchhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4 9999999999998 76664 4457788876 57899999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCHHHHHHHHhh
Q 017101 354 CVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 354 ~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
++++.|+.+ +|+++++++++++
T Consensus 310 ~v~~~G~~~-~p~~~ev~~~l~~ 331 (346)
T 3ktn_A 310 AHTIQGDIP-LTTVKQVNHVLEH 331 (346)
T ss_dssp HTTSSSSCC-CCCHHHHHHHHHC
T ss_pred HhccCCCCC-CCCHHHHHHHHhc
Confidence 999999987 8999999999874
No 15
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=100.00 E-value=3.1e-47 Score=356.57 Aligned_cols=298 Identities=23% Similarity=0.312 Sum_probs=238.6
Q ss_pred CCCEEEEccceeeeeeccCC-CCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDR-LPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~-~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gV 145 (377)
+++|+|+|++++|++..... .+..............+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||
T Consensus 5 ~~~v~~iG~~~~D~~~~~~~~~~~~~~~~p~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i~~~L~~~gV 84 (325)
T 3h49_A 5 NLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQFILDHCRKENI 84 (325)
T ss_dssp CEEEEEESCCEEEEEECSCCGGGGGSSCCCCSCCCCEEESHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHHHTC
T ss_pred CCeEEEEChhhheeeccCCCCccccccccchheeEEccCcHHHHHHHHHHHCCCCeEEEEEECCChHHHHHHHHHHHcCC
Confidence 57899999999999753211 00011111123457899999999999999999999999999999999999999999999
Q ss_pred CcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCC-CCCCCcCcCchhHHHHhhcCEEEEccCC-----CHHHHHHHH
Q 017101 146 RLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTN-MSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQVA 219 (377)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~ 219 (377)
+++++.+. ++.+|+.++++++++|+|+++...+.. .....+.+. .+.+..++++++++.. ..+.+.+++
T Consensus 85 ~~~~v~~~--~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 159 (325)
T 3h49_A 85 DIQSLKQD--VSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVD---FARFSQAKLLSLASIFNSPLLDGKALTEIF 159 (325)
T ss_dssp BCSSCEEE--TTSCCCEEEEEECTTSCEEEECCTTSHHHHCCGGGCC---GGGGGGCSEEEEEEETTSTTSCHHHHHHHH
T ss_pred ceeeEEec--CCCCCceEEEEECCCCceeEEeccCcccccCChhhcC---hhhhccCCEEEEecccCCcccCHHHHHHHH
Confidence 99999887 778999999999999999987665432 112222232 2457889999998632 346778899
Q ss_pred HHHHhCCCcEEEcCCCCC--CCC---hhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCC
Q 017101 220 KAARSAGVPVIFDAGGMD--API---PQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAK 294 (377)
Q Consensus 220 ~~a~~~g~~v~~D~~~~~--~~~---~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~ 294 (377)
+.+++++ .+++|+.... +.. ..++++++|++++|++|++.++|.. +..++++.+.+.|++.|+||+|++
T Consensus 160 ~~a~~~~-~~~~d~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l~~~g~~~vvvt~G~~ 233 (325)
T 3h49_A 160 TQAKARQ-MIICADMIKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGKE-----TLDEIADCFLACGVKTVVIKTGKD 233 (325)
T ss_dssp HHHHHTT-CEEEEEECCCSSCCCHHHHHHHHTTCSEEECBHHHHHHHHTCS-----SHHHHHHHHHTTTCSEEEEECTTS
T ss_pred HHHHhcC-CEEEecCCchhhhhHHHHHHHHHhhCCEEecCHHHHHHHhCCC-----CHHHHHHHHHHcCCCEEEEEeCCC
Confidence 9999988 4666654321 121 2467899999999999999999865 355677788888999999999999
Q ss_pred CeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHH
Q 017101 295 GSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLL 374 (377)
Q Consensus 295 G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l 374 (377)
|++++..+ +.+++|+++..+++|||||||+|+|||+++|++|+++++|+++|+++|+++|++.|+.+++|+++|+++++
T Consensus 234 G~~~~~~~-~~~~~~~~~~~~vvDttGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l 312 (325)
T 3h49_A 234 GCFIKRGD-MTMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLL 312 (325)
T ss_dssp CEEEEETT-EEEEECCCSSCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSSSSCSSSHHHHTC-
T ss_pred CeEEEECC-eEEEecCcCCCCCcCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Confidence 99877554 56788887545899999999999999999999999999999999999999999999999999999999988
Q ss_pred hh
Q 017101 375 QY 376 (377)
Q Consensus 375 ~~ 376 (377)
++
T Consensus 313 ~~ 314 (325)
T 3h49_A 313 EE 314 (325)
T ss_dssp --
T ss_pred Hh
Confidence 65
No 16
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}
Probab=100.00 E-value=3.7e-49 Score=369.88 Aligned_cols=293 Identities=20% Similarity=0.285 Sum_probs=220.5
Q ss_pred CCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCC
Q 017101 66 TPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (377)
Q Consensus 66 ~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gV 145 (377)
++++|+|+|++++|++...+++|.. ........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||
T Consensus 20 ~~~~v~viG~~~~D~~~~~~~~p~~----~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~i~~~l~~~gv 95 (327)
T 3hj6_A 20 GDLDVVSLGEILVDMISTEEVNSLS----QSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGNYLLDVLKGEQI 95 (327)
T ss_dssp --CCEEEESCCEEEEECCCCCSSGG----GCCEEEEEEECHHHHHHHHHHHTTCCEEEECEEESSHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEccceEEEeccCCCCCcc----ccceeeeecCcHHHHHHHHHHHcCCcEEEEEEeCCCHHHHHHHHHHHHcCC
Confidence 4689999999999999887776542 455667899999999999999999999999999999999999999999999
Q ss_pred CcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccC-----CCHHHHHHHHH
Q 017101 146 RLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQRE-----IPDSVNIQVAK 220 (377)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~ 220 (377)
+++++.+. ++.+|+.+++..+ +|+++++.+.+++....++.+ ..+.+..++++++++. .+.+.+.++++
T Consensus 96 ~~~~v~~~--~~~~t~~~~v~~~-~g~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~v~~~g~~l~~~~~~~~~~~~~~ 169 (327)
T 3hj6_A 96 ITDGIQQD--KERRTTIVYVSKS-TRTPDWLPYREADMYLQEDDI---IFELIKRSKVFHLSTFILSRKPARDTAIKAFN 169 (327)
T ss_dssp BCTTCEEE--SSSCCCEEEECCC-TTCCCEEEECSGGGGCCSCCC---HHHHHC--CEEEEESHHHHSHHHHHHHHHHHH
T ss_pred CcccEEEc--CCCCceEEEEEec-CCCccEEEecChhhhCChhhc---CHhHhccCCEEEECchHhcCchhHHHHHHHHH
Confidence 99999877 7778988877665 689988888776544333222 2356889999999862 23466778899
Q ss_pred HHHhCCCcEEEcCCCCCC---------CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEee
Q 017101 221 AARSAGVPVIFDAGGMDA---------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKL 291 (377)
Q Consensus 221 ~a~~~g~~v~~D~~~~~~---------~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~ 291 (377)
.++++|+++++|++.... ....++++++|++++|++|++.++|.. +..++++.+.+.|++.|+||+
T Consensus 170 ~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l~~~g~~~vvvt~ 244 (327)
T 3hj6_A 170 YAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPD-----SPENYVKRYLELGVKAVILTL 244 (327)
T ss_dssp HHHHTTCEEEEECCCCGGGSCSSSCSHHHHHHHHTTCSEECCBHHHHHHHHTTS-----CSSGGGGGGTTTTCSEEEEEC
T ss_pred HHHHCCCEEEEECCCchhhcCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCC-----CHHHHHHHHHhCCCCEEEEEE
Confidence 999999999999986431 123567899999999999999999863 223456667778999999999
Q ss_pred CCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHH
Q 017101 292 GAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVL 371 (377)
Q Consensus 292 G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~ 371 (377)
|++|++++.. ++.+++|++ .++++|||||||+|+|||+++|++|+++++|+++|+++|++++++.|+.+++|+++|++
T Consensus 245 G~~G~~~~~~-~~~~~~~~~-~v~vvdttGAGDaf~ag~~~~l~~g~~~~~a~~~A~a~aa~~v~~~G~~~~~p~~~ev~ 322 (327)
T 3hj6_A 245 GEEGVIASDG-EEIIRIPAF-SEDAVDVTGAGDAFWSGFICGLLDGYTVKRSIKLGNGVAAFKIRGVGALSPVPSKEDII 322 (327)
T ss_dssp STTCEEEECS-SCEEESCSS-TTC-----CCHHHHHHHHHHTTSSCSTTHHHHHHHHCCCSSCC----------------
T ss_pred CCCceEEEeC-CeeEEcCCc-ccccCCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 9999987754 457788876 67899999999999999999999999999999999999999999999998999999999
Q ss_pred HHHh
Q 017101 372 NLLQ 375 (377)
Q Consensus 372 ~~l~ 375 (377)
++++
T Consensus 323 ~~l~ 326 (327)
T 3hj6_A 323 KEYN 326 (327)
T ss_dssp ----
T ss_pred HHhc
Confidence 9885
No 17
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=100.00 E-value=2.3e-47 Score=358.91 Aligned_cols=295 Identities=20% Similarity=0.217 Sum_probs=230.9
Q ss_pred CCCCCCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHH
Q 017101 62 NPINTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALS 141 (377)
Q Consensus 62 ~~~~~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~ 141 (377)
.+..++++|+|+|++++|++... +++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|+
T Consensus 21 ~~m~~~~~vlviG~~~iD~~~~~-----~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i~~~L~ 95 (336)
T 4du5_A 21 QSMTSALDVITFGEAMMLLVADR-----PGPLEHAEAFHKRTAGAETNVAIGLARLGLKVGWASRLGTDSMGRYLLAAMA 95 (336)
T ss_dssp -----CEEEEEECCCEEEEEESS-----SSCGGGCCEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHH
T ss_pred eccCCCCCEEEEChhhhhccCCC-----CCccchhhheeecCCCHHHHHHHHHHhCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 33445789999999999998653 3566777778899999999999999999999999999999999999999999
Q ss_pred hCCCCcccEEeccCCCCCCceEEEEEecCCCeeEE-EEC--CCCCCCCCcCcCchhHHHHhhcCEEEEccCCC------H
Q 017101 142 GCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSII-IVG--GTNMSCWPEKFGDEDLEVVKKAGIVLLQREIP------D 212 (377)
Q Consensus 142 ~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~-~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~------~ 212 (377)
+.||+++++.+. ++.+|+.+++.++++|+++.+ .+. +++....++.+.. +.+..++++++++..+ .
T Consensus 96 ~~GV~~~~v~~~--~~~~T~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~~~~~---~~l~~~~~v~~~g~~~~~~~~~~ 170 (336)
T 4du5_A 96 AEGIDCSHVVCD--ATQKTGFQFKGKVTDGSDPPVEYHRKGSAASHMGVADIDE---AWLLSARHLHATGVFPAISATTL 170 (336)
T ss_dssp TTTCEEEEEEEC--TTSCCCEEEECCCSCC--CCEEEECTTCTGGGCCGGGCCH---HHHTTEEEEEEESSGGGSCTTHH
T ss_pred HcCCCcceEEEc--CCCCcEEEEEEEcCCCCcceEEEECCCChhHhCChhhCCH---hHhccCCEEEEcCchhhCChHHH
Confidence 999999999887 778999999999888855543 332 3333333333332 5678899999876432 2
Q ss_pred HHHHHHHHHHHhCCCcEEEcCCCCCC---------CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcC
Q 017101 213 SVNIQVAKAARSAGVPVIFDAGGMDA---------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMG 283 (377)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~---------~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g 283 (377)
+.+.++++.+++.++++++|++.+.. ....++++++|+++||++|++.|+|.. +..++++.+.+.|
T Consensus 171 ~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~pN~~Ea~~l~g~~-----~~~~~~~~l~~~g 245 (336)
T 4du5_A 171 PAARKTMDLMRAAGRSVSFDPNLRPTLWATPELMRDAINDLATRADWVLPGMEEGRFLTGET-----TPEGVARFYRQLG 245 (336)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCGGGSSSHHHHHHHHHHHHTTCSEECCBHHHHHHHHCCC-----SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEEEeCcCCchhcCChHHHHHHHHHHHHhCCEEECCHHHHHHHhCCC-----CHHHHHHHHHhcC
Confidence 45678889999999999999984321 123567899999999999999999864 4567788888999
Q ss_pred CCEEEEeeCCCCeEEEEeCCeeEEeccCCCCc-ccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 017101 284 VQQVLVKLGAKGSALFVEGEKPIKQSIIPAAR-VIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIP 362 (377)
Q Consensus 284 ~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~-vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~ 362 (377)
++.|+||+|++|++++. +++.+++|++ .++ ++||+||||+|+|||+++|++|+++++|+++|+++|+++|++.|+.+
T Consensus 246 ~~~vvvt~G~~G~~~~~-~~~~~~~~~~-~v~~vvdttGAGDaf~a~~~~~l~~g~~l~~a~~~A~~~aa~~v~~~G~~~ 323 (336)
T 4du5_A 246 AKLVVVKLGAEGAYFDG-EAGSGRVAGF-PVAEVVDTVGAGDGFAVGVISALLDGLGVPEAVKRGAWIGARAVQVLGDSE 323 (336)
T ss_dssp CSEEEEECGGGCEEEEE-TTEEEEECCC-CC-------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC------
T ss_pred CCEEEEEecCCceEEEE-CCeEEEeCCc-cCCCCCCCccchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCcc
Confidence 99999999999997775 4567788887 455 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHH
Q 017101 363 SMPDRKSVLNL 373 (377)
Q Consensus 363 ~~p~~e~i~~~ 373 (377)
++|+++|++++
T Consensus 324 ~~p~~~ev~~~ 334 (336)
T 4du5_A 324 GLPTRAELNAA 334 (336)
T ss_dssp CCCCHHHHHCC
T ss_pred CCCCHHHHHhc
Confidence 99999999865
No 18
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*
Probab=100.00 E-value=3.3e-48 Score=369.12 Aligned_cols=300 Identities=19% Similarity=0.215 Sum_probs=252.9
Q ss_pred CCCEEEEccceeeeeeccCC--------------------CCCCCCeeeeCcceecCCChHHHHHHHHHHc---CCCceE
Q 017101 67 PPPLVVVGSANFDIYVEIDR--------------------LPKVGETVAAKTSQTLAGGKGANQAACGAKL---SHPTYF 123 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~--------------------~p~~~~~~~~~~~~~~~GG~~~NvA~~la~L---G~~v~l 123 (377)
+.+|+++|++++|+++.++. +|..++.+........+||++.|+|+++++| |.++.+
T Consensus 24 ~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~P~~ge~~~~~~~~~~~GG~~~N~A~~la~L~~~G~~~~~ 103 (370)
T 3vas_A 24 EGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSY 103 (370)
T ss_dssp TTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTHHHHHHTTSSSCEEEEECHHHHHHHHHHHHHCCTTCEEE
T ss_pred CccEEEECCcceeEEEecCHHHHHHcCCCCCceEEccHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHHHhcCCCCcEEE
Confidence 46899999999999999984 5655666666778899999999999999999 999999
Q ss_pred EEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc-hhHHHHhhcC
Q 017101 124 VGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD-EDLEVVKKAG 202 (377)
Q Consensus 124 i~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~ 202 (377)
+|.+|+|.+|+++++.|++.||+++++... ++.+|+.++++++ +|+|+++.+.+++....++.+.. ...+.+..++
T Consensus 104 ig~vG~D~~G~~~~~~L~~~GV~~~~~~~~--~~~~Tg~~~i~v~-~g~rt~~~~~ga~~~l~~~~~~~~~~~~~~~~~~ 180 (370)
T 3vas_A 104 VGCIGADIQGKYIKNDCSALDLVTEFQIAE--EPLMTGKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQ 180 (370)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCEECCEECC--TTCCEEEEEEEEC-SSCEEEEEEEEGGGGCCHHHHTSHHHHHHHHHCS
T ss_pred EEEEcCChhHHHHHHHHHHcCCcccccccC--CCCCceEEEEEEe-CCceeEEEccchhhhCCHHHcCchhhHHHHhhCC
Confidence 999999999999999999999999999875 5678999999998 89999998887765544444443 2346788999
Q ss_pred EEEEccCC---CHHHHHHHHHHHHhCCCcEEEcCCCCC-----CCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHH
Q 017101 203 IVLLQREI---PDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISE 274 (377)
Q Consensus 203 ~~~~~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~ 274 (377)
++++++.. +.+.+.++++.++++|+++++|+.... .....++++++|++++|++|++.+++....+.+++.+
T Consensus 181 ~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~ld~~~~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~~ 260 (370)
T 3vas_A 181 VYYIAGFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHA 260 (370)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCHHHHHHHHTTCSEEEEEHHHHHHHHHHTTCCSSHHHH
T ss_pred EEEEEeeeccCCHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEcCHHHHHHHhcccCCCccCHHH
Confidence 99998754 356778899999999999999996421 1235678999999999999999998865444467888
Q ss_pred HHHHHHhc-------CCCEEEEeeCCCCeEEEEe-CCeeEEeccCCC--CcccCccCchHHHHHHHHHHHhCCCCHHHHH
Q 017101 275 AVVKCHKM-------GVQQVLVKLGAKGSALFVE-GEKPIKQSIIPA--ARVIDTTGAGDTFTASFAVGFVEGKSREECL 344 (377)
Q Consensus 275 ~~~~l~~~-------g~~~vvvT~G~~G~~~~~~-~~~~~~~~~~~~--~~vvdttGAGDaF~ag~l~~l~~g~~l~~al 344 (377)
+++.+.++ +++.||||+|++|++++.. +++.+++|+++. .+++|||||||+|+|||+++|++|+++++|+
T Consensus 261 ~~~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~v~~~~vvDttGAGDaF~ag~l~~l~~g~~l~~a~ 340 (370)
T 3vas_A 261 TARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSL 340 (370)
T ss_dssp HHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEETTCSSCEEECCCCCCTTTCSCCTTHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHhhcccccccCCCEEEEecCCCceEEEEcCCCeEEEEecccccCCCcCCCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888885 8999999999999987762 445677887632 3899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCHHHHH
Q 017101 345 RFAAAAASLCVQVKGAIPSMPDRKSVL 371 (377)
Q Consensus 345 ~~a~~aAa~~~~~~G~~~~~p~~e~i~ 371 (377)
++|+++|+++|++.|+. +|+++++.
T Consensus 341 ~~A~aaAa~~v~~~G~~--~p~~~~~~ 365 (370)
T 3vas_A 341 HAAVKAAAYIICRSGFS--LGSRDSYS 365 (370)
T ss_dssp HHHHHHHHHHHTSSSSC--CCCGGGGC
T ss_pred HHHHHHHHHHHcccCCc--CCCCccce
Confidence 99999999999999985 48877764
No 19
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.2e-46 Score=353.76 Aligned_cols=298 Identities=21% Similarity=0.336 Sum_probs=240.2
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+|+|++++|++......|. .........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 11 ~~~i~viG~~~~D~~~~~~~~~~----~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~~~L~~~gV~ 86 (332)
T 2qcv_A 11 EFDLIAIGRACIDLNAVEYNRPM----EETMTFSKYVGGSPANIVIGSSKLGLKAGFIGKIADDQHGRFIESYMRGVGVD 86 (332)
T ss_dssp SEEEEEESCCEEEEEESSCSSCG----GGCCCEEEEEESHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHHTTCB
T ss_pred CCcEEEECcceEEEecCCCCCCc----cccceeEecCCCHHHHHHHHHHHcCCceEEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 56899999999999987655442 22345678999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCC-CCCCceEEEEEecCCCeeEEEECC--CCCCCCCcCcCchhHHHHhhcCEEEEccCC-----CHHHHHHH
Q 017101 147 LDYMNVVKDG-GVPTGHAVVMLQSDGQNSIIIVGG--TNMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQV 218 (377)
Q Consensus 147 ~~~v~~~~~~-~~~T~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~ 218 (377)
++++... + ..+|+.+++.++.+|++++.++.. ++....++.+. ...+..++++++++.. +.+.+..+
T Consensus 87 ~~~v~~~--~~~~~t~~~~v~~~~~g~~~~~~~~~~~a~~~l~~~~~~---~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 161 (332)
T 2qcv_A 87 TSNLVVD--QEGHKTGLAFTEIKSPEECSILMYRQDVADLYLSPEEVN---EAYIRRSKLLLVSGTALSKSPSREAVLKA 161 (332)
T ss_dssp CTTEEEC--SSCCCCCEEEEEEEETTEEEEEEECTTCGGGGCCGGGCC---HHHHTTEEEEEEEGGGGSSTTHHHHHHHH
T ss_pred CcceEec--CCCCCceEEEEEEcCCCCccEEEECCcchhhhCCHhHCC---HHHHccCCEEEEeCccccCchhHHHHHHH
Confidence 9999876 4 358999988877778887766653 22222222332 2457889999987643 23667788
Q ss_pred HHHHHhCCCcEEEcCCCCCCC---------ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 017101 219 AKAARSAGVPVIFDAGGMDAP---------IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLV 289 (377)
Q Consensus 219 ~~~a~~~g~~v~~D~~~~~~~---------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvv 289 (377)
++.++++++++++|++..... ....+++++|++++|++|++.|+|.... ++..++++.+++.|++.|+|
T Consensus 162 ~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~--~~~~~~~~~l~~~g~~~vvv 239 (332)
T 2qcv_A 162 IRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEK--GDNDETIRYLFKHSPELIVI 239 (332)
T ss_dssp HHHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHHHCSEEEEEHHHHHHHTTCSSC--CCHHHHHHHHTTSSCSEEEE
T ss_pred HHHHHHCCCEEEEcCcCchhhcCCHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCcC--CCHHHHHHHHHHcCCCEEEE
Confidence 999999999999999864211 1345788999999999999999986431 23456778888889999999
Q ss_pred eeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHH
Q 017101 290 KLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKS 369 (377)
Q Consensus 290 T~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~ 369 (377)
|+|++|++++..+++.+++|++ .++++||+||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.+++|++++
T Consensus 240 t~G~~G~~~~~~~~~~~~~~~~-~v~vvdt~GAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~e 318 (332)
T 2qcv_A 240 KHGVEGSFAYTKAGEAYRGYAY-KTKVLKTFGAGDSYASAFLYALISGKGIETALKYGSASASIVVSKHSSSDAMPSVEE 318 (332)
T ss_dssp ECGGGCEEEEETTSCEEEECCB-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-----CCCCHHH
T ss_pred EECCcceEEEecCCceEEcCCC-CccccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCCCccCCCCHHH
Confidence 9999999877664556778876 578999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHhh
Q 017101 370 VLNLLQY 376 (377)
Q Consensus 370 i~~~l~~ 376 (377)
+++++++
T Consensus 319 v~~~l~~ 325 (332)
T 2qcv_A 319 IEALIEK 325 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999864
No 20
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=100.00 E-value=4e-47 Score=357.06 Aligned_cols=298 Identities=21% Similarity=0.208 Sum_probs=245.3
Q ss_pred CCCCCEEEEccceeeeeecc----------CCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHH
Q 017101 65 NTPPPLVVVGSANFDIYVEI----------DRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGK 134 (377)
Q Consensus 65 ~~~~~I~viG~~~vD~~~~v----------~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~ 134 (377)
+++|+|+|+|++++|+++.+ +++|..++..........+||++.|+|+++++||.++.++|.+|+| .|+
T Consensus 8 ~~~m~i~v~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~g~ 86 (334)
T 2pkf_A 8 QSHMTIAVTGSIATDHLMRFPGRFSEQLLPEHLHKVSLSFLVDDLVMHRGGVAGNMAFAIGVLGGEVALVGAAGAD-FAD 86 (334)
T ss_dssp CCSSEEEEESCCEEEEEEECSSCTHHHHTTSCGGGCCCCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEECGG-GHH
T ss_pred ccCCeEEEECChhheEEEecChHHhhhhchhhccccccccccccceecCCChHHHHHHHHHHcCCCeEEEEEEeCc-hHH
Confidence 34579999999999999988 7788888777777788899999999999999999999999999999 899
Q ss_pred HHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHH
Q 017101 135 LITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSV 214 (377)
Q Consensus 135 ~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 214 (377)
+++.|++.||+++++.+. ++.+|+.++++++++|++++..+++++....+..+.. ....+..++++++++.. ++.
T Consensus 87 -i~~~L~~~gV~~~~v~~~--~~~~T~~~~~~~~~~g~~~~~~~~ga~~~~~~~~~~~-~~~~l~~~~~v~~~~~~-~~~ 161 (334)
T 2pkf_A 87 -YRDWLKARGVNCDHVLIS--ETAHTARFTCTTDVDMAQIASFYPGAMSEARNIKLAD-VVSAIGKPELVIIGAND-PEA 161 (334)
T ss_dssp -HHHHHHTTTEECTTCEEC--SSCCCEEEEEEECTTCCEEEEEECGGGGGGGGCCHHH-HHHHHCSCSEEEEESCC-HHH
T ss_pred -HHHHHHHCCCceeeeEec--CCCCceEEEEEEcCCCCEEEEECCchhhhCCHhhcCh-hhhhhcCCCEEEEcCCC-hHH
Confidence 999999999999999887 6778999999998889998877776543322222221 11235789999998765 456
Q ss_pred HHHHHHHHHhCCCcEEEcCCCCCC----CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 017101 215 NIQVAKAARSAGVPVIFDAGGMDA----PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVK 290 (377)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~~----~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT 290 (377)
..++++.+++.++++++|++.... ....++++++|++++|++|++.++|....+.+ .+.+. ++.|+||
T Consensus 162 ~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~l~~~l~~~dil~~N~~E~~~l~g~~~~~~~-------~l~~~-~~~vvvt 233 (334)
T 2pkf_A 162 MFLHTEECRKLGLAFAADPSQQLARLSGEEIRRLVNGAAYLFTNDYEWDLLLSKTGWSEA-------DVMAQ-IDLRVTT 233 (334)
T ss_dssp HHHHHHHHHHHTCCEEEECGGGGGTSCHHHHHTTTTTCSEEEEEHHHHHHHHHHHCCCHH-------HHHTT-CSCEEEE
T ss_pred HHHHHHHHHhcCCeEEEeccchhhhhhHHHHHHHHhcCCEEecCHHHHHHHhccCCCCHH-------HHHhc-CCEEEEE
Confidence 778889999999999999975421 12356888999999999999999875332222 23343 8899999
Q ss_pred eCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHH
Q 017101 291 LGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSV 370 (377)
Q Consensus 291 ~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i 370 (377)
+|++|++++..++..+++|+++...++|||||||+|+|||+++|++|+++++|+++|+++|+.++++.|+.+++|+++++
T Consensus 234 ~G~~G~~~~~~~~~~~~~~~~~v~~vvDttGAGDaF~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev 313 (334)
T 2pkf_A 234 LGPKGVDLVEPDGTTIHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSAQLGSLVAVLVLESTGTQEWQWDYEAA 313 (334)
T ss_dssp CGGGCEEEECTTSCEEEECCCCCSCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSSCCCCCHHHH
T ss_pred eCCCCeEEEeCCCcEEEeCCcCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCCCCcCCCCHHHH
Confidence 99999977755542677887643347899999999999999999999999999999999999999999999889999999
Q ss_pred HHHHhh
Q 017101 371 LNLLQY 376 (377)
Q Consensus 371 ~~~l~~ 376 (377)
++++++
T Consensus 314 ~~~l~~ 319 (334)
T 2pkf_A 314 ASRLAG 319 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 21
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=100.00 E-value=4.1e-47 Score=359.21 Aligned_cols=294 Identities=22% Similarity=0.323 Sum_probs=246.3
Q ss_pred CCCEEEEccceeeeeeccCC-------CCCCCCeeee-----------CcceecCCChHHHHHHHHHHcCCCceEEEEec
Q 017101 67 PPPLVVVGSANFDIYVEIDR-------LPKVGETVAA-----------KTSQTLAGGKGANQAACGAKLSHPTYFVGQVG 128 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~-------~p~~~~~~~~-----------~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG 128 (377)
+++|+++|++++|++..+++ +|+.+..... ......+||++.|+|+++++||.++.++|.+|
T Consensus 25 ~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~li~~~~~~~l~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~ig~vG 104 (352)
T 4e3a_A 25 RFDVLTVGNAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRMGPALEASGGSAGNTAAGVANLGGKAAYFGNVA 104 (352)
T ss_dssp SEEEEEECCCEEEEEEECCHHHHHHTTCCTTSEEECCHHHHHHHHHHSCSCEEEECCHHHHHHHHHHHHTCCEEEECCCC
T ss_pred cccEEEECCceeeEEEecCHHHHHHcCCCCCcceEeCHHHHHHHHHHhhhccEecCCHHHHHHHHHHHcCCCeEEEEEEC
Confidence 57899999999999999986 5544433321 23467899999999999999999999999999
Q ss_pred CCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEcc
Q 017101 129 EDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQR 208 (377)
Q Consensus 129 ~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 208 (377)
+|.+|+++++.|++.||+++++... ++.+|+.++++++++|+|++..+.+++....++.+.. +.+..++++++++
T Consensus 105 ~D~~G~~l~~~l~~~GV~~~~~~~~--~~~~T~~~~v~v~~~g~r~~~~~~ga~~~l~~~~~~~---~~~~~~~~v~~~G 179 (352)
T 4e3a_A 105 ADQLGDIFTHDIRAQGVHYQTKPKG--AFPPTARSMIFVTEDGERSMNTYLGACVELGPEDVEA---DVVADAKVTYFEG 179 (352)
T ss_dssp SSHHHHHHHHHHHHTTCEECCCCCC--SSSCCEEEEEEECTTSCEEEEEECGGGGGCCGGGCCH---HHHHTEEEEEEEG
T ss_pred CChHHHHHHHHHHHcCCccceeecc--CCCCCeEEEEEEcCCCceEEEeccChhhcCChhhCCH---HHHhhCCEEEEee
Confidence 9999999999999999999999876 6778999999999999999988877665554444442 5688999999986
Q ss_pred CC-----CHHHHHHHHHHHHhCCCcEEEcCCCCC-----CCChhhhhc--cCceeccCHHHHhhccCCCCCCHHHHHHHH
Q 017101 209 EI-----PDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLN--FIDILSPNESELGRLTGMPTDSYEQISEAV 276 (377)
Q Consensus 209 ~~-----~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~--~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~ 276 (377)
.. +.+.+.++++.++++|+++++|++... .....++++ ++|++++|++|++.+++.. ++.+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~ll~~~~~dil~~N~~Ea~~l~g~~-----~~~~a~ 254 (352)
T 4e3a_A 180 YLWDPPRAKEAILDCARIAHQHGREMSMTLSDSFCVDRYRGEFLDLMRSGKVDIVFANRQEALSLYQTD-----DFEEAL 254 (352)
T ss_dssp GGGSSSSHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHTTCS-----CHHHHH
T ss_pred eecCCchHHHHHHHHHHHHHHcCCEEEEECCchhhHHHHHHHHHHHhcccCCcEEEeCHHHHHHHhCCC-----CHHHHH
Confidence 43 346778899999999999999997421 122456788 8999999999999999864 345566
Q ss_pred HHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Q 017101 277 VKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQ 356 (377)
Q Consensus 277 ~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~ 356 (377)
+.+.+ +++.|+||+|++|++++. +++.+++|+++..+++|||||||+|+|||+++|++|+++++|+++|+++|+.+|+
T Consensus 255 ~~l~~-~~~~vvvT~G~~G~~~~~-~~~~~~~~~~~v~~vvDttGAGDaF~agfl~~l~~g~~l~~a~~~A~~aAa~~v~ 332 (352)
T 4e3a_A 255 NRIAA-DCKIAAVTMSENGAVILK-GRERYYVNAIRIREVVDTTGAGDLFASGFLYGYTQGRSLEDCGKLGCLAAGIVIQ 332 (352)
T ss_dssp HHHHH-HSSEEEEECGGGCEEEEE-TTEEEEECCCCCSCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHhc-CCCEEEEEECCCceEEEE-CCEEEEECCccCCCCcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Confidence 66655 689999999999997775 4567888887433589999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHH
Q 017101 357 VKGAIPSMPDRKSVLN 372 (377)
Q Consensus 357 ~~G~~~~~p~~e~i~~ 372 (377)
+.|+.+..|.++.+++
T Consensus 333 ~~G~~~~~~~~~~~~~ 348 (352)
T 4e3a_A 333 QIGPRPMTSLSEAAKQ 348 (352)
T ss_dssp SSSSSCSSCHHHHHHH
T ss_pred CCCCCCCcCHHHHHHH
Confidence 9999999988888765
No 22
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=100.00 E-value=2.5e-46 Score=347.99 Aligned_cols=287 Identities=25% Similarity=0.318 Sum_probs=237.3
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
||+|+|+|++++|++. |.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 1 m~~i~viG~~~~D~~~-----~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i~~~L~~~gv~ 75 (309)
T 1v1a_A 1 MLEVVTAGEPLVALVP-----QEPGHLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVD 75 (309)
T ss_dssp CCSEEEESCCEEEEEC-----SSSSCGGGCCEEEEEEECHHHHHHHHHHHHTCCEEEEEEECSSHHHHHHHHHHHHHTCB
T ss_pred CCcEEEEccceEEEec-----CCCCcccchheeeeecCcHHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 4689999999999984 23445555667788999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECC--CCCCCCCcCcCchhHHHHhhcCEEEEccCCC------HHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGG--TNMSCWPEKFGDEDLEVVKKAGIVLLQREIP------DSVNIQV 218 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~------~~~~~~~ 218 (377)
++++... ++ +|+.+++.++.+|++++..+.. ++....++.+.. +.+..++++++++..+ .+.+.++
T Consensus 76 ~~~v~~~--~~-~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 149 (309)
T 1v1a_A 76 LTHFRRA--PG-FTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDP---DYLEGVRFLHLSGITPALSPEARAFSLWA 149 (309)
T ss_dssp CTTEEEC--SS-CCCEEEEEECTTSCEEEEEECTTCSGGGCCTTSSCG---GGGTTCSEEEEETTGGGSCHHHHHHHHHH
T ss_pred CceEEEc--CC-CCEEEEEEECCCCCceEEEeCCCChhhhCCHhhCCh---hHhcCCCEEEEeCchhccCchHHHHHHHH
Confidence 9999887 77 9999999888889888776542 222333333332 3567899999987543 2456778
Q ss_pred HHHHHhCCCcEEEcCCCCCCC--------ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 017101 219 AKAARSAGVPVIFDAGGMDAP--------IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVK 290 (377)
Q Consensus 219 ~~~a~~~g~~v~~D~~~~~~~--------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT 290 (377)
++.++++++++++|++..... ...++++++|++++|++|++.+++.+ .++++ +.|++.|+||
T Consensus 150 ~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-------~~~~~---~~g~~~vvvt 219 (309)
T 1v1a_A 150 MEEAKRRGVRVSLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFGRV-------EEALR---ALSAPEVVLK 219 (309)
T ss_dssp HHHHHTTTCEEEEECCCCTTTSCHHHHHHHHHHHGGGCSEEEEEHHHHHHHHSSH-------HHHHH---HTCCSEEEEE
T ss_pred HHHHHHcCCEEEEeCCCCcccCCHHHHHHHHHHHHHhCCEEECcHHHHHHHhCCH-------HHHHH---hcCCCEEEEE
Confidence 899999999999999864321 23467899999999999999998753 22333 6799999999
Q ss_pred eCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHH
Q 017101 291 LGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSV 370 (377)
Q Consensus 291 ~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i 370 (377)
+|++|+++ ..+++.+++|++ +++++|||||||+|+|||+++|++|+++++|+++|+++|+.++++.|+.+++|+++++
T Consensus 220 ~G~~G~~~-~~~~~~~~~~~~-~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v 297 (309)
T 1v1a_A 220 RGAKGAWA-FVDGRRVEGSAF-AVEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDL 297 (309)
T ss_dssp CGGGCEEE-EETTEEEECCCC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSTTTTTCCCHHHH
T ss_pred ecCCCeeE-ecCCcEEEeCCC-CCCcCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCCCCcCCCCHHHH
Confidence 99999977 654567788876 5789999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHhh
Q 017101 371 LNLLQY 376 (377)
Q Consensus 371 ~~~l~~ 376 (377)
++++++
T Consensus 298 ~~~~~~ 303 (309)
T 1v1a_A 298 EVLLKA 303 (309)
T ss_dssp TTCC--
T ss_pred HHHHhh
Confidence 887753
No 23
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=100.00 E-value=2e-46 Score=349.32 Aligned_cols=289 Identities=19% Similarity=0.230 Sum_probs=237.9
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
||+|+|+|++++|++. |.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 1 m~~v~viG~~~~D~~~-----~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~~~~~l~~~gv~ 75 (313)
T 2v78_A 1 MVDVIALGEPLIQFNS-----FNPGPLRFVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGID 75 (313)
T ss_dssp -CCEEEECCCEEEEEE-----SSSSCGGGCCEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHHTTCB
T ss_pred CCeEEEECcceEEEec-----CCCCcccccceeEecCCChHHHHHHHHHHCCCcEEEEEEeCCCHHHHHHHHHHHHcCCc
Confidence 4689999999999985 34455566667788999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEE--EecCCCeeEEEEC--CCCCCCCCcCcCchhHHHHhhcCEEEEccCCC------HHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVM--LQSDGQNSIIIVG--GTNMSCWPEKFGDEDLEVVKKAGIVLLQREIP------DSVNI 216 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~--~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~------~~~~~ 216 (377)
++++... ++.+|+.+++. ++++|++++..+. +++....++++.. +.+..++++++++..+ .+.+.
T Consensus 76 ~~~v~~~--~~~~t~~~~~~~~~~~~g~~~~~~~~~~~a~~~l~~~~~~~---~~~~~~~~v~~~g~~~~~~~~~~~~~~ 150 (313)
T 2v78_A 76 TSHIKVD--NESFTGIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINE---NYVRNSRLVHSTGITLAISDNAKEAVI 150 (313)
T ss_dssp CTTEEEE--TTSCCCEEEEEESSSSTTCEEEEEECTTCSGGGCCGGGCCH---HHHHTSSEEEEEHHHHHHCHHHHHHHH
T ss_pred CceEEEc--CCCCceEEEEEEecCCCCCeeEEEeCCcChhHhCChhhCCH---HHhcCCCEEEEcCchhhcChHHHHHHH
Confidence 9999887 67789999998 8888988887664 2333333333332 4578899999986433 24445
Q ss_pred HHHHHHHhCCCcEEEcCCCCCC---------CChhhhhccCc--eeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCC
Q 017101 217 QVAKAARSAGVPVIFDAGGMDA---------PIPQELLNFID--ILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQ 285 (377)
Q Consensus 217 ~~~~~a~~~g~~v~~D~~~~~~---------~~~~~ll~~~d--vl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~ 285 (377)
++++.+++. ++|++.... ....++++++| ++++|++|++.++|.. ++.++++.+.+.|++
T Consensus 151 ~~~~~a~~~----~~D~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~N~~E~~~l~g~~-----~~~~~~~~l~~~g~~ 221 (313)
T 2v78_A 151 KAFELAKSR----SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVT-----DPDEAYRKYKELGVK 221 (313)
T ss_dssp HHHHHCSSE----EEECCCCGGGSSCHHHHHHHHHHHHHHSCEEEEEECHHHHHHHHSCC-----CHHHHHHHHHHTTEE
T ss_pred HHHHHHHHh----CcCCcCChhhcCCHHHHHHHHHHHHHhcCeeEEECcHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 556555543 899976421 12346788999 9999999999999853 456677888888999
Q ss_pred EEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCC
Q 017101 286 QVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMP 365 (377)
Q Consensus 286 ~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p 365 (377)
.|+||+|++|++++. +++.+++|++ +++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.+++|
T Consensus 222 ~vvvt~G~~G~~~~~-~~~~~~~~~~-~v~vvDttGAGDaF~ag~~~~l~~g~~~~~a~~~a~~~aa~~v~~~G~~~~~~ 299 (313)
T 2v78_A 222 VLLYKLGSKGAIAYK-DNVKAFKDAY-KVPVEDPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRGDNELTP 299 (313)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECCC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSSTTCC
T ss_pred EEEEEECCCCcEEee-CCcEEEeCCC-cCCccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 999999999997764 5567788886 56899999999999999999999999999999999999999999999998899
Q ss_pred CHHHHHHHHhh
Q 017101 366 DRKSVLNLLQY 376 (377)
Q Consensus 366 ~~e~i~~~l~~ 376 (377)
+++++++++++
T Consensus 300 ~~~~v~~~~~~ 310 (313)
T 2v78_A 300 TLEDAERFLNE 310 (313)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 99999999875
No 24
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*
Probab=100.00 E-value=9.6e-47 Score=353.19 Aligned_cols=290 Identities=20% Similarity=0.266 Sum_probs=241.0
Q ss_pred CCEEEEccceeeeeecc----------CCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecC-CccHHHH
Q 017101 68 PPLVVVGSANFDIYVEI----------DRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE-DANGKLI 136 (377)
Q Consensus 68 ~~I~viG~~~vD~~~~v----------~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~-D~~G~~i 136 (377)
|+|+|+|++++|+++.+ +++|..++..........+||++.|+|+++++||.++.++|.+|+ | .|+ +
T Consensus 1 m~i~v~G~~~iD~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~~D-~g~-i 78 (326)
T 3b1n_A 1 MATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVD-AQP-Y 78 (326)
T ss_dssp -CEEEESCCEEEEEEECSSCGGGGCCTTSSSSCEEEEECCSCCCEEECHHHHHHHHHHHTTCCEEEEEEEETTT-CHH-H
T ss_pred CcEEEECcceEEEEEecchhhhhhccccccCCCCcceecccceeccCCHHHHHHHHHHHcCCCeeEEEEECCcC-HHH-H
Confidence 47999999999999988 788888888777788889999999999999999999999999999 9 899 9
Q ss_pred HHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHH
Q 017101 137 TDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNI 216 (377)
Q Consensus 137 ~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (377)
++.|++.||+++++.+. ++.+|+.++++++++|++++...++++....+..+. ....++++++++.. .+.+.
T Consensus 79 ~~~L~~~gVd~~~v~~~--~~~~T~~~~v~~~~~g~~~~~~~~ga~~~~~~~~~~-----~~~~~~~v~~~~~~-~~~~~ 150 (326)
T 3b1n_A 79 LDRMDALGLSREYVRVL--PDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAG-----EAKDIKLAIVGPDG-FQGMV 150 (326)
T ss_dssp HHHHHHHTCEEEEEEEE--TTCCCEEEEEEECTTCCCEEEEECGGGGGGGGSCGG-----GCCSCSEEEECSCC-HHHHH
T ss_pred HHHHHHcCCcccceEEc--CCCCceEEEEEECCCCceEEEEecChhhhcChhhcc-----cccCCCEEEECCcc-HHHHH
Confidence 99999999999999887 777899999999988898887776654332222222 12678999998765 45677
Q ss_pred HHHHHHHhCCCcEEEcCCCCCC----CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeC
Q 017101 217 QVAKAARSAGVPVIFDAGGMDA----PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLG 292 (377)
Q Consensus 217 ~~~~~a~~~g~~v~~D~~~~~~----~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G 292 (377)
++++.+++.++++++|++.... +...++++++|++++|++|++.+++....+.+ .+.+ +++.|+||+|
T Consensus 151 ~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~-------~l~~-~~~~vvvT~G 222 (326)
T 3b1n_A 151 QHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSED-------EIAS-RVQALIITRG 222 (326)
T ss_dssp HHHHHHHHHTCCEEECCGGGGGGCCHHHHHHHHHHCSEEEEEHHHHHHHHHHHCCCHH-------HHHT-TSSEEEEECG
T ss_pred HHHHHHHHCCCEEEEeCchhhhhccHHHHHHHHHhCCEEecCHHHHHHHhCCCCCCHH-------HHHh-cCCEEEEecC
Confidence 8889999999999999975321 12356889999999999999999875332222 2233 3889999999
Q ss_pred CCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHH
Q 017101 293 AKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLN 372 (377)
Q Consensus 293 ~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~ 372 (377)
++|++++..+ +.+++|+++...++|||||||+|+|||+++|++|+++++|+++|+++|+.++++.|+.+.+|+++++++
T Consensus 223 ~~Ga~~~~~~-~~~~~~~~~v~~vvDttGAGDaF~ag~l~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~~~~~~~~ev~~ 301 (326)
T 3b1n_A 223 EHGATIRHRD-GTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDA 301 (326)
T ss_dssp GGCEEEEETT-EEEEECCCCCSCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSTTCCCCCHHHHHH
T ss_pred CCceEEEECC-cEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence 9999877544 567888874334789999999999999999999999999999999999999999999988999999999
Q ss_pred HHhh
Q 017101 373 LLQY 376 (377)
Q Consensus 373 ~l~~ 376 (377)
++++
T Consensus 302 ~l~~ 305 (326)
T 3b1n_A 302 RFET 305 (326)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 25
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=100.00 E-value=1.4e-46 Score=355.33 Aligned_cols=292 Identities=22% Similarity=0.251 Sum_probs=236.7
Q ss_pred CCCEEEEccceeeeeec--cCCCCC--CCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHh
Q 017101 67 PPPLVVVGSANFDIYVE--IDRLPK--VGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSG 142 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~--v~~~p~--~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~ 142 (377)
+++|+|+|++++|++.. ++++++ +.+..........+||+ +|+|+++++||.++.++|.+|+|.+|+++++.|++
T Consensus 53 ~~~ilvvG~~~~D~~~~g~v~r~~p~~p~~~~~~~~~~~~~GG~-~NvA~~la~LG~~v~~ig~vG~D~~G~~i~~~L~~ 131 (352)
T 4e84_A 53 RSRVLVVGDVMLDRYWFGNVDRISPEAPVPVVHVQRQEERLGGA-ANVARNAVTLGGQAGLLCVVGCDEPGERIVELLGS 131 (352)
T ss_dssp TCEEEEEECEEEEEEEEEEEEEECSSSSSEEEEEEEEEEEEEEH-HHHHHHHHHTTCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCcEEEECccceEEEEeecccccCCCCCcceEEeeEEEEecChH-HHHHHHHHHcCCCEEEEEEeCCChhHHHHHHHHHH
Confidence 68899999999999986 666522 23356667778999997 89999999999999999999999999999999999
Q ss_pred CCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccC--CCHHHHHHHHH
Q 017101 143 CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQRE--IPDSVNIQVAK 220 (377)
Q Consensus 143 ~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~ 220 (377)
.||++. +... ++.+|+.++++++.++++..+...+.........+.+...+.+..++++++++. .+.+.+.++++
T Consensus 132 ~GV~~~-~~~~--~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~ 208 (352)
T 4e84_A 132 SGVTPH-LERD--PALPTTIKLRVLARQQQLLRVDFEAMPTHEVLLAGLARFDVLLPQHDVVLMSDYAKGGLTHVTTMIE 208 (352)
T ss_dssp TSCEEE-EEEE--TTSCCCEEEEEEESSCEEEEEEECCCCCHHHHHHHHHHHHHHGGGCSEEEEECCSSSSCSSHHHHHH
T ss_pred cCCcee-eEEC--CCCCCceEEEEEcCCceEEEEEcCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCHHHHHHHHH
Confidence 999994 5555 677899999998876655444443221110001111223356889999999842 22234678899
Q ss_pred HHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHh-cCCCEEEEeeCCCCeEEE
Q 017101 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK-MGVQQVLVKLGAKGSALF 299 (377)
Q Consensus 221 ~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~-~g~~~vvvT~G~~G~~~~ 299 (377)
.++++|+++++|+++.. ..+++++|+++||++|++.++| ...+.+++.++++.+++ .|++.|+||+|++|++++
T Consensus 209 ~a~~~g~~v~~D~~~~~----~~~l~~~dil~pN~~Ea~~l~g-~~~~~~~~~~~a~~l~~~~g~~~VvvT~G~~Ga~~~ 283 (352)
T 4e84_A 209 KARAAGKAVLVDPKGDD----WARYRGASLITPNRAELREVVG-QWKSEDDLRARVANLRAELDIDALLLTRSEEGMTLF 283 (352)
T ss_dssp HHHHTTCEEEEECCSSC----CSTTTTCSEECCBHHHHHHHHC-CCSSHHHHHHHHHHHHHHHTCSEEEEECGGGCEEEE
T ss_pred HHHhcCCEEEEECCCcc----hhhccCCcEEcCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCEEEEEcCCCcEEEE
Confidence 99999999999998642 2478899999999999999999 44566788888888885 699999999999999877
Q ss_pred EeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHH
Q 017101 300 VEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVL 371 (377)
Q Consensus 300 ~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~ 371 (377)
.. ++.+++|++ .++++|||||||+|+|||+++|++|+++++|+++|+++|+++|++.|+.+ |+++||+
T Consensus 284 ~~-~~~~~~pa~-~v~vvDttGAGDaF~ag~l~~l~~g~~l~~al~~A~aaaa~~v~~~Ga~~--~t~~el~ 351 (352)
T 4e84_A 284 SA-GGELHAPAL-AREVFDVSGAGDTVIATVATMLGAGVPLVDAVVLANRAAGIVVGKLGTAT--VDYDELF 351 (352)
T ss_dssp ET-TEEEEECCC-CSCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSCC--CCHHHHT
T ss_pred EC-CceEEecCC-CcCccCCccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcc--CCHHHhc
Confidence 54 567888887 57899999999999999999999999999999999999999999999976 7999986
No 26
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=100.00 E-value=2.4e-46 Score=351.12 Aligned_cols=295 Identities=23% Similarity=0.327 Sum_probs=246.5
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+|.++|+|++++|+++.++++ ..+++.+.......+||++.|+|+++++||.++.++|.+|+ .+|+++++.|++.||+
T Consensus 20 ~Mi~~v~G~~~~D~~~~~~~~-~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~-~~G~~l~~~L~~~gV~ 97 (330)
T 2jg1_A 20 HMILTLTLNPSVDISYPLTAL-KLDDVNRVQEVSKTAGGKGLNVTRVLAQVGEPVLASGFIGG-ELGQFIAKKLDHADIK 97 (330)
T ss_dssp CCEEEEESSCEEEEEEEESCC-CTTSEEEESCCEEEEECHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHHHHHHHTTCE
T ss_pred cEEEEEecchhheEEEecCCc-cCCceEEeceEEEcCCchHHHHHHHHHHhCCCeEEEEEecc-hhHHHHHHHHHHCCCc
Confidence 577889999999999999987 78889988889999999999999999999999999999996 6999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc---hhHHHHhhcCEEEEccCCCH----HHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD---EDLEVVKKAGIVLLQREIPD----SVNIQVA 219 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 219 (377)
++++... + .|++++.+++++ +++++...++. ..+..+.. ...+.+..++++++++..+. +.+.+++
T Consensus 98 ~~~v~~~--~--~t~~~~~~v~~~-~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 170 (330)
T 2jg1_A 98 HAFYNIK--G--ETRNCIAILHEG-QQTEILEQGPE--IDNQEAAGFIKHFEQMMEKVEAVAISGSLPKGLNQDYYAQII 170 (330)
T ss_dssp ECCEEES--S--CCEEEEEEEETT-EEEEEEECCCB--CCHHHHHHHHHHHHHHGGGCSEEEEESCCCBTSCTTHHHHHH
T ss_pred eeEEEcc--C--CCeeEEEEEeCC-CcEEEECCCCC--CCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCCHHHHHHHH
Confidence 9998875 3 378888888766 66665555442 11111111 01133678999999876653 5778899
Q ss_pred HHHHhCCCcEEEcCCCCCCCChhhhhc---cCceeccCHHHHhhccCCCCC-CHHHHHHHHHHHHhcCCCEEEEeeCCCC
Q 017101 220 KAARSAGVPVIFDAGGMDAPIPQELLN---FIDILSPNESELGRLTGMPTD-SYEQISEAVVKCHKMGVQQVLVKLGAKG 295 (377)
Q Consensus 220 ~~a~~~g~~v~~D~~~~~~~~~~~ll~---~~dvl~~N~~E~~~l~g~~~~-~~~~~~~~~~~l~~~g~~~vvvT~G~~G 295 (377)
+.++++|+++++|+++. ...++++ ++|++++|++|++.++|.+.. +.+++.++++.+++.|++.|+||+|++|
T Consensus 171 ~~a~~~g~~v~~D~~~~---~l~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~l~~~g~~~VvvT~G~~G 247 (330)
T 2jg1_A 171 ERCQNKGVPVILDCSGA---TLQTVLENPYKPTVIKPNISELYQLLNQPLDESLESLKQAVSQPLFEGIEWIIVSLGAQG 247 (330)
T ss_dssp HHHHTTTCCEEEECCHH---HHHHHHTSSSCCSEECCBHHHHHHHTTSCCCCCHHHHHHHHHSGGGTTCSEEEEECGGGC
T ss_pred HHHHHCCCEEEEECCcH---HHHHHHhccCCceEEEeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEeecCCc
Confidence 99999999999999742 3455666 899999999999999987644 5567888888888889999999999999
Q ss_pred eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHh
Q 017101 296 SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
++++..+ +.+++|++ +++++|||||||+|.|||+++|++|+++++|+++|+++|++++++.|+. +|++++++++++
T Consensus 248 a~~~~~~-~~~~~~~~-~v~vvDttGAGDaF~ag~~~~l~~g~~l~~al~~A~a~aa~~v~~~G~~--~~~~~ev~~~~~ 323 (330)
T 2jg1_A 248 AFAKHNH-TFYRVNIP-TISVLNPVGSGDSTVAGITSAILNHENDHDLLKKANTLGMLNAQEAQTG--YVNLNNYDDLFN 323 (330)
T ss_dssp EEEEETT-EEEEEECC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSS--CCCGGGHHHHHT
T ss_pred eEEEeCC-CEEEEeCC-CccccCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCCC--CCCHHHHHHHHh
Confidence 9776544 56778876 5789999999999999999999999999999999999999999999984 699999999987
Q ss_pred hC
Q 017101 376 YA 377 (377)
Q Consensus 376 ~~ 377 (377)
+.
T Consensus 324 ~i 325 (330)
T 2jg1_A 324 QI 325 (330)
T ss_dssp TC
T ss_pred ce
Confidence 53
No 27
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=100.00 E-value=9.8e-46 Score=344.00 Aligned_cols=293 Identities=19% Similarity=0.269 Sum_probs=245.9
Q ss_pred CCEEEE-ccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 68 PPLVVV-GSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 68 ~~I~vi-G~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+.|+++ +++++|+++.++++ .++++++......++||++.|+|+++++||.++.++|.+|+| .|+++++.|++.||+
T Consensus 2 ~~i~~v~~n~~~D~~~~v~~~-~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~l~~~gv~ 79 (309)
T 3umo_A 2 VRIYTLTLAPSLDSATITPQI-YPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLVSLLADENVP 79 (309)
T ss_dssp CCEEEECSSCEEEEEEEESCC-CSSSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHHHHHHHTTCC
T ss_pred CcEEEEecchhheEEEEcCcc-cCCCeEEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHHcCCc
Confidence 456655 68999999999999 789999999999999999999999999999999999999999 999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEec-CCCeeEEEECCCCCCCCCcCcCchhHHH---HhhcCEEEEccCCC----HHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQS-DGQNSIIIVGGTNMSCWPEKFGDEDLEV---VKKAGIVLLQREIP----DSVNIQV 218 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~---l~~~~~~~~~~~~~----~~~~~~~ 218 (377)
++++... + +|+.++.+++. +|+++++...+++ ..+..+ +...+. +..++++++++.++ .+.+.++
T Consensus 80 ~~~v~~~--~--~t~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (309)
T 3umo_A 80 VATVEAK--D--WTRQNLHVHVEASGEQYRFVMPGAA--LNEDEF-RQLEEQVLEIESGAILVISGSLPPGVKLEKLTQL 152 (309)
T ss_dssp EEEEECS--S--CCCCCEEEEETTTCCEEEEECCCCC--CCHHHH-HHHHHHHTTSCTTCEEEEESCCCTTCCHHHHHHH
T ss_pred eEEEEec--C--CCeeEEEEEECCCCcEEEEEcCCCC--CCHHHH-HHHHHHHHhcCCCCEEEEEccCCCCCCHHHHHHH
Confidence 9998764 3 46666655554 7899888776653 222222 111222 24678999987654 4678889
Q ss_pred HHHHHhCCCcEEEcCCCCCCCChhhhhcc--CceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCC-CEEEEeeCCCC
Q 017101 219 AKAARSAGVPVIFDAGGMDAPIPQELLNF--IDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGV-QQVLVKLGAKG 295 (377)
Q Consensus 219 ~~~a~~~g~~v~~D~~~~~~~~~~~ll~~--~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~-~~vvvT~G~~G 295 (377)
++.++++++++++|++. ....+++++ +|+++||++|++.++|....+.+++.++++.+.+.+. +.++||+|++|
T Consensus 153 ~~~a~~~~~~v~~D~~~---~~l~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~~vvvt~G~~G 229 (309)
T 3umo_A 153 ISAAQKQGIRCIVDSSG---EALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQG 229 (309)
T ss_dssp HHHHHHTTCEEEEECCH---HHHHHHTSSCCBSEECCBHHHHHHHHTSCCCSTTHHHHHHHHHHHTTSBSCEEEECGGGC
T ss_pred HHHHHhcCCEEEEECCc---HHHHHHhccCCCeEEEeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCccc
Confidence 99999999999999964 234556776 5999999999999999876666788889999999887 89999999999
Q ss_pred eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHh
Q 017101 296 SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
++++..+ +.+++|++ .++++|||||||+|.|||+++|++|+++++|+++|+++|+++|++.|+. +|+++|++++++
T Consensus 230 ~~~~~~~-~~~~~~~~-~v~vvdttGAGD~f~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~--~~~~~ev~~~l~ 305 (309)
T 3umo_A 230 ALGVDSE-NCIQVVPP-PVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYA 305 (309)
T ss_dssp EEEECSS-CEEEECCC-SCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSTTC--CCCHHHHHHHHH
T ss_pred EEEEECC-cEEEEeCC-CcCCCCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHH
Confidence 9777555 46788876 5789999999999999999999999999999999999999999999985 699999999998
Q ss_pred h
Q 017101 376 Y 376 (377)
Q Consensus 376 ~ 376 (377)
+
T Consensus 306 ~ 306 (309)
T 3umo_A 306 Y 306 (309)
T ss_dssp H
T ss_pred H
Confidence 6
No 28
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=1.8e-46 Score=352.27 Aligned_cols=294 Identities=19% Similarity=0.244 Sum_probs=247.9
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeee---CcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAA---KTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGC 143 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~---~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~ 143 (377)
.|.|+|+|++++|+++.+++ |.++++.+. ......+||++.|+|+++++||.++.++|.+|+| +|+++++.|++.
T Consensus 12 ~~~~~v~G~~~vD~~~~~~~-~~~g~~~~~s~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~d-~G~~i~~~L~~~ 89 (331)
T 2ajr_A 12 HMVLTVTLNPALDREIFIED-FQVNRLYRINDLSKTQMSPGGKGINVSIALSKLGVPSVATGFVGGY-MGKILVEELRKI 89 (331)
T ss_dssp CCEEEEESSCEEEEEEECTT-CCSSCEEECCSGGGEEEEEESHHHHHHHHHHHTTCCEEEEEEEEHH-HHHHHHHHHHHH
T ss_pred ceEEEEecchHHeEEEEcCC-ccCCceEEeccccceEEecCcHHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHHc
Confidence 68999999999999999998 788898888 8888999999999999999999999999999998 999999999999
Q ss_pred C--CCcccEEeccCCCCCCceEEEEEecCCCe-eEEEECCCCCCCCCcCcCc---hhHHHHhhcCEEEEccCCCH----H
Q 017101 144 G--VRLDYMNVVKDGGVPTGHAVVMLQSDGQN-SIIIVGGTNMSCWPEKFGD---EDLEVVKKAGIVLLQREIPD----S 213 (377)
Q Consensus 144 g--Vd~~~v~~~~~~~~~T~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~l~~---~~~~~l~~~~~~~~~~~~~~----~ 213 (377)
| |+++++... + +|++++++++++|++ +.+...++. ..++.+.. ...+.+..++++++++.++. +
T Consensus 90 g~~V~~~~v~~~--~--~t~~~~~~v~~~g~~~~~~~~~g~~--l~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 163 (331)
T 2ajr_A 90 SKLITTNFVYVE--G--ETRENIEIIDEKNKTITAINFPGPD--VTDMDVNHFLRRYKMTLSKVDCVVISGSIPPGVNEG 163 (331)
T ss_dssp CTTEEEEEEEES--S--CCEEEEEEEETTTTEEEEEECCCCC--CCHHHHHHHHHHHHHHHTTCSEEEEESCCCTTSCTT
T ss_pred CCccceEEEEcC--C--CCeEEEEEEeCCCceEEEEeCCCCC--CCHHHHHHHHHHHHHhcccCCEEEEECCCCCCCCHH
Confidence 9 999998875 3 488888888888888 555444442 11111111 01134678999999887653 5
Q ss_pred HHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhcc---CceeccCHHH-HhhccCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 017101 214 VNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNF---IDILSPNESE-LGRLTGMPTDSYEQISEAVVKCHKMGVQQVLV 289 (377)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~---~dvl~~N~~E-~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvv 289 (377)
.+.++++.+++.|+++++|+++. ...+++++ +|++++|++| ++.++|....+.+++.++++.+++. ++.|+|
T Consensus 164 ~~~~~~~~a~~~g~~v~~D~~~~---~~~~~l~~~~~~dil~~N~~E~~~~l~g~~~~~~~~~~~~~~~l~~~-~~~vvv 239 (331)
T 2ajr_A 164 ICNELVRLARERGVFVFVEQTPR---LLERIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEK-SQVSVV 239 (331)
T ss_dssp HHHHHHHHHHHTTCEEEEECCHH---HHHHHHHSSCCCSEECCCCTTCCSCBTTBCCCSHHHHHHHHHHHHHH-SSEEEE
T ss_pred HHHHHHHHHHHcCCEEEEECChH---HHHHHHhcCCCCeEEEeCccchHHHHhCCCCCCHHHHHHHHHHHHHh-cCEEEE
Confidence 77889999999999999999752 24456654 9999999999 9999987766667788888889888 999999
Q ss_pred eeCCCCeEEEEeCCeeEEec-cCCCCcccCccCchHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhcccCCCCCCCCH
Q 017101 290 KLGAKGSALFVEGEKPIKQS-IIPAARVIDTTGAGDTFTASFAVGFV-EGKSREECLRFAAAAASLCVQVKGAIPSMPDR 367 (377)
Q Consensus 290 T~G~~G~~~~~~~~~~~~~~-~~~~~~vvdttGAGDaF~ag~l~~l~-~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~ 367 (377)
|+|++|++++..+ ..+++| ++ +++++|||||||+|+|||+++|+ +|+++++|+++|+++|++++++.|+. +|++
T Consensus 240 T~G~~Ga~~~~~~-~~~~~~~~~-~v~vvDttGAGDaF~ag~l~~l~~~g~~~~~al~~A~a~aa~~v~~~G~~--~~~~ 315 (331)
T 2ajr_A 240 SYEVKNDIVATRE-GVWLIRSKE-EIDTSHLLGAGDAYVAGMVYYFIKHGANFLEMAKFGFASALAATRRKEKY--MPDL 315 (331)
T ss_dssp EETTTEEEEECSS-CEEEEEESS-CCCGGGCTTHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTSSSCC--CCCH
T ss_pred eecCCceEEEeCC-cEEEEecCC-cccccCCCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcCcC--CCCH
Confidence 9999999776554 467778 76 57899999999999999999999 99999999999999999999999984 6999
Q ss_pred HHHHHHHhh
Q 017101 368 KSVLNLLQY 376 (377)
Q Consensus 368 e~i~~~l~~ 376 (377)
+++++++++
T Consensus 316 ~ev~~~~~~ 324 (331)
T 2ajr_A 316 EAIKKEYDH 324 (331)
T ss_dssp HHHHTTGGG
T ss_pred HHHHHHHhh
Confidence 999998875
No 29
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Probab=100.00 E-value=4.4e-46 Score=346.67 Aligned_cols=289 Identities=21% Similarity=0.245 Sum_probs=237.5
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|++|+|+|++++|++. |.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 1 m~~v~viG~~~~D~~~-----~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i~~~l~~~gv~ 75 (311)
T 2dcn_A 1 MAKLITLGEILIEFNA-----LSPGPLRHVSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVD 75 (311)
T ss_dssp -CEEEEESCCEEEEEE-----SSSSCGGGCCEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHHTTCB
T ss_pred CCCEEEECCceEEEec-----CCCCcccccceeeecCCChHHHHHHHHHHCCCceEEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 3579999999999986 34455666667788999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCC--eeEEEEC--CCCCCCCCcCcCchhHHHHhhcCEEEEccCCC------HHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQ--NSIIIVG--GTNMSCWPEKFGDEDLEVVKKAGIVLLQREIP------DSVNI 216 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~--~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~------~~~~~ 216 (377)
++++... ++.+|+.+++.++++|+ |++..+. +++....++++. .+.+..++++++++..+ .+.+.
T Consensus 76 ~~~v~~~--~~~~t~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~v~~~g~~~~~~~~~~~~~~ 150 (311)
T 2dcn_A 76 VSHMKID--PSAPTGIFFIQRHYPVPLKSESIYYRKGSAGSKLSPEDVD---EEYVKSADLVHSSGITLAISSTAKEAVY 150 (311)
T ss_dssp CTTCEEE--TTSCCCEEEEEESCSSTTCEEEEEECTTCTGGGCCGGGCC---HHHHTTCSEEEEEHHHHHSCHHHHHHHH
T ss_pred cceEEEc--CCCCceEEEEEECCCCCccceEEEecCcChhhhCChhhcC---hHHHcCCCEEEEeCcccccChHHHHHHH
Confidence 9999887 77799999999988888 8877654 233333333332 24578899999986432 24455
Q ss_pred HHHHHHHhCCCcEEEcCCCCCCC--------Chhhhhc--cCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCE
Q 017101 217 QVAKAARSAGVPVIFDAGGMDAP--------IPQELLN--FIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQ 286 (377)
Q Consensus 217 ~~~~~a~~~g~~v~~D~~~~~~~--------~~~~ll~--~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~ 286 (377)
++++.+++. ++|++.+... ...++++ ++|++++|++|++.++|.. ++.++++.+.+. ++.
T Consensus 151 ~~~~~a~~~----~~D~~~~~~~~~~~~~~~~~~~~l~~~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l~~~-~~~ 220 (311)
T 2dcn_A 151 KAFEIASNR----SFDTNIRLKLWSAEEAKREILKLLSKFHLKFLITDTDDSKIILGES-----DPDKAAKAFSDY-AEI 220 (311)
T ss_dssp HHHHHCSSE----EEECCCCTTTSCHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHSCC-----CHHHHHHHHTTT-EEE
T ss_pred HHHHHHHHh----CcCccCchhhCChHHHHHHHHHHHhhcCCcEEECCHHHHHHHhCCC-----CHHHHHHHHHHh-CCE
Confidence 666665544 8999864221 2346788 9999999999999999853 456677888887 889
Q ss_pred EEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 017101 287 VLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPD 366 (377)
Q Consensus 287 vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~ 366 (377)
|+||+|++|++++. +++.+++|++ +++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.+++|+
T Consensus 221 vvvt~G~~G~~~~~-~~~~~~~~~~-~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~a~~~aa~~v~~~G~~~~~~~ 298 (311)
T 2dcn_A 221 IVMKLGPKGAIVYY-DGKKYYSSGY-QVPVEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVASTLNVMIRGDQENLPT 298 (311)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEECC-CCCCSCCTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTSSSSSTTCCC
T ss_pred EEEEECCCCcEEEe-CCcEEEeCCc-cccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 99999999997765 4457788886 578999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHhhC
Q 017101 367 RKSVLNLLQYA 377 (377)
Q Consensus 367 ~e~i~~~l~~~ 377 (377)
++++++++++.
T Consensus 299 ~~~v~~~~~~~ 309 (311)
T 2dcn_A 299 TKDIETFLREM 309 (311)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999998763
No 30
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=100.00 E-value=1.4e-45 Score=345.53 Aligned_cols=283 Identities=22% Similarity=0.248 Sum_probs=236.3
Q ss_pred CCCCCCCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHc--CCCceEEEEecCCccHHHHHH
Q 017101 61 KNPINTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKL--SHPTYFVGQVGEDANGKLITD 138 (377)
Q Consensus 61 ~~~~~~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~L--G~~v~li~~vG~D~~G~~i~~ 138 (377)
+|..+++++|+|+|++++|++... ++ ......+||++.|+|+++++| |.++.++|.+|+|.+|+++++
T Consensus 17 ~y~~~~m~~i~viG~~~iD~~~~~------~~----~~~~~~~GG~~~NvA~~la~Lg~G~~~~~ig~vG~D~~G~~l~~ 86 (328)
T 4e69_A 17 NLYFQSMMHILSIGECMAELAPAD------LP----GTYRLGFAGDTFNTAWYLARLRPESRISYFSAIGDDALSQQMRA 86 (328)
T ss_dssp CSSCBSSCEEEEESCCEEEEEECS------ST----TEEEEEEECHHHHHHHHHHHHCTTSEEEEECEECSSHHHHHHHH
T ss_pred ccccccCCcEEEecCcEEEEecCC------CC----CceEEecCCHHHHHHHHHHhcCCCCcEEEEEeeCCCHHHHHHHH
Confidence 566777899999999999999741 11 445788999999999999999 899999999999999999999
Q ss_pred HHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccC-------CC
Q 017101 139 ALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQRE-------IP 211 (377)
Q Consensus 139 ~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~-------~~ 211 (377)
.|++.||+++++.+. ++.+|+.+++.++ +|+|+++.+.+.+.........+...+.+..++++++++. .+
T Consensus 87 ~L~~~GV~~~~v~~~--~~~~T~~~~v~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 163 (328)
T 4e69_A 87 AMSAAGIDGGGLRVI--PGRTVGLYLITLE-QGERSFAYWRGQSAARELAGDADALAAAMARADVVYFSGITLAILDQCG 163 (328)
T ss_dssp HHHHTTEECTTCEEC--TTCCCEEEEEEEE-TTEEEEEEECTTCGGGGTTSCHHHHHHHHTTCSEEEEEHHHHHTSCHHH
T ss_pred HHHHcCCccceEEEc--CCCCCeEEEEEec-CCceEEEEeCCCCHHHhhcCccccchHHhcCCCEEEECCchhhccCchH
Confidence 999999999999887 7778999999999 9999998887654321000111112367889999999863 12
Q ss_pred HHHHHHHHHHHHhCCCcEEEcCCCCCC---------CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhc
Q 017101 212 DSVNIQVAKAARSAGVPVIFDAGGMDA---------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKM 282 (377)
Q Consensus 212 ~~~~~~~~~~a~~~g~~v~~D~~~~~~---------~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~ 282 (377)
.+.+.++++.+++.++++++|++.... ....++++++|+++||++|++.|+|.+ ++.++++.+.++
T Consensus 164 ~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l~~~ 238 (328)
T 4e69_A 164 RATLLRALAQARATGRTIAFDPNLRPRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFGDA-----GPDATADRYARA 238 (328)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCGGGCSCHHHHHHHHHHHHTTCSEECCBHHHHHHHHTCS-----SHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEeCCHHHHHHHcCCC-----CHHHHHHHHHhc
Confidence 345678888999999999999975321 124578899999999999999999865 467778888899
Q ss_pred CCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 017101 283 GVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIP 362 (377)
Q Consensus 283 g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~ 362 (377)
|++.|+||+|++|++++..+ +.+++|+++..+++||+||||+|+|||+++|++|+++++|+++|+++|+.+|++.|+.+
T Consensus 239 g~~~vvvt~G~~G~~~~~~~-~~~~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~l~~a~~~A~~~aa~~v~~~Ga~~ 317 (328)
T 4e69_A 239 GVRSVVVKNGPHAVHFLQDG-RRGRVPVPPVAQVVDTTAAGDSFNAGLLDSVLAGQPLETAIAAAAALAGQVVQGKGALV 317 (328)
T ss_dssp TCSEEEEBCTTSCEEEEETT-EEEEECCCCCCSCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred CCCEEEEEeCCCCeEEEeCC-ceEEecCCCCCCccCCCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHccCCCcC
Confidence 99999999999999777554 56788886557899999999999999999999999999999999999999999999875
No 31
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=100.00 E-value=1.5e-45 Score=344.82 Aligned_cols=293 Identities=20% Similarity=0.275 Sum_probs=244.8
Q ss_pred CCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 68 PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 68 ~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
|.++|+|++++|+++.+++ |..++..+.......+||++.|+|+++++||.++.++|.+|+ .+|+++++.|++.||++
T Consensus 3 m~i~v~g~~~~D~~~~v~~-~~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~-~~G~~i~~~L~~~gV~~ 80 (323)
T 2f02_A 3 LIVTVTMNPSIDISYLLDH-LKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLGG-FHGAFIANELKKANIPQ 80 (323)
T ss_dssp CEEEEESSCEEEEEEECSC-CCTTSEEEESCEEEEEESHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHHHHHHHTTCCB
T ss_pred eEEEEecCceeEEEEecCC-cccCCEEEeceEEEcCCcHHHHHHHHHHHcCCCeEEEEEecc-chHHHHHHHHHHCCCce
Confidence 6899999999999999998 788999999899999999999999999999999999999997 59999999999999999
Q ss_pred ccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc---hhHHHHhhcCEEEEccCCCH----HHHHHHHH
Q 017101 148 DYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD---EDLEVVKKAGIVLLQREIPD----SVNIQVAK 220 (377)
Q Consensus 148 ~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 220 (377)
+++... + +|++++.+++++ +++++...++. ..++.+.. ...+.+..++++++++..+. +.+.++++
T Consensus 81 ~~v~~~--~--~t~~~~~~~~~~-~~~~~~~~g~~--l~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 153 (323)
T 2f02_A 81 AFTSIK--E--ETRDSIAILHEG-NQTEILEAGPT--VSPEEISNFLENFDQLIKQAEIVTISGSLAKGLPSDFYQELVQ 153 (323)
T ss_dssp CCEEES--S--CCEEEEEEEETT-EEEEEEECCCB--CCHHHHHHHHHHHHHHHTTCSEEEEESCCCBTSCTTHHHHHHH
T ss_pred eEEEcC--C--CCeeEEEEEcCC-CeEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCChHHHHHHHH
Confidence 998875 3 477888888766 66665555542 11111111 01124578999999876653 67788899
Q ss_pred HHHhCCCcEEEcCCCCCCCChhhhh---ccCceeccCHHHHhhccCCCCC-CH-HHHHHHHHHHHhcCCCEEEEeeCCCC
Q 017101 221 AARSAGVPVIFDAGGMDAPIPQELL---NFIDILSPNESELGRLTGMPTD-SY-EQISEAVVKCHKMGVQQVLVKLGAKG 295 (377)
Q Consensus 221 ~a~~~g~~v~~D~~~~~~~~~~~ll---~~~dvl~~N~~E~~~l~g~~~~-~~-~~~~~~~~~l~~~g~~~vvvT~G~~G 295 (377)
.+++.++++++|+++. ...+++ +++|++++|++|++.|+|.... +. +++.++++.+.+.|++.|+||+|++|
T Consensus 154 ~a~~~g~~v~~Dp~~~---~~~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G 230 (323)
T 2f02_A 154 KAHAQEVKVLLDTSGD---SLRQVLQGPWKPYLIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIVISLGKDG 230 (323)
T ss_dssp HHHHTTCEEEEECCTH---HHHHHHHSSCCCSEECCBHHHHHHHHTCCCCSSCHHHHHHHHTSGGGTTCSEEEEECGGGC
T ss_pred HHHHCCCEEEEECChH---HHHHHHhccCCCeEEecCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCCEEEEeecCCc
Confidence 9999999999999752 234556 4899999999999999987643 33 56777888888889999999999999
Q ss_pred eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHh
Q 017101 296 SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
++++..+ +.+++|++ .++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.|+. +|++++++++++
T Consensus 231 ~~~~~~~-~~~~~~~~-~v~vvdttGAGDaF~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~--~~~~~ev~~~~~ 306 (323)
T 2f02_A 231 AIAKHHD-QFYRVKIP-TIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQERMTG--HVDVENVKKHLM 306 (323)
T ss_dssp EEEEETT-EEEEEECC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSSSS--CCCHHHHHHHHT
T ss_pred eEEEeCC-CEEEEcCC-CccccCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCCcC--CCCHHHHHHHhh
Confidence 9777554 56778876 5789999999999999999999999999999999999999999999984 699999999987
Q ss_pred h
Q 017101 376 Y 376 (377)
Q Consensus 376 ~ 376 (377)
+
T Consensus 307 ~ 307 (323)
T 2f02_A 307 N 307 (323)
T ss_dssp T
T ss_pred c
Confidence 5
No 32
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=100.00 E-value=8.1e-46 Score=344.55 Aligned_cols=294 Identities=19% Similarity=0.266 Sum_probs=237.8
Q ss_pred CCEEEE-ccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 68 PPLVVV-GSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 68 ~~I~vi-G~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
++|+++ |++++|+++.+++ |.+++..+.......+||++.|+|+++++||.++.++|.+|+| +|+++++.|++.||+
T Consensus 2 ~~I~~v~g~~~~D~~~~~~~-~~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~l~~~gv~ 79 (309)
T 3cqd_A 2 VRIYTLTLAPSLDSATITPQ-IYPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLVSLLADENVP 79 (309)
T ss_dssp CCEEEECSSCEEEEEEEESC-CCSSSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHHHHHHHTTCC
T ss_pred ceEEEEeccchheEEEEcCC-CcCCCeeeccceeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHHcCCC
Confidence 357744 6999999999998 5888999888899999999999999999999999999999998 899999999999999
Q ss_pred cccEEeccCCCCCCceEEEE-EecCCCeeEEEECCCCCCCCCcCcCc---hhHHHHhhcCEEEEccCCC----HHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVM-LQSDGQNSIIIVGGTNMSCWPEKFGD---EDLEVVKKAGIVLLQREIP----DSVNIQV 218 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~~~~~~~~~~~~----~~~~~~~ 218 (377)
++++... + .|++++.+ ++++|+++++...++. ..+..+.. ...+.++. +++++++..+ .+.+.++
T Consensus 80 ~~~v~~~--~--~t~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~ 152 (309)
T 3cqd_A 80 VATVEAK--D--WTRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQVLEIESG-AILVISGSLPPGVKLEKLTQL 152 (309)
T ss_dssp EEEEECS--S--CCCCCEEEEETTTCCEEEEECCCCC--CCHHHHHHHHHHHHTSCTT-CEEEEESCCCTTCCHHHHHHH
T ss_pred ceeEEcC--C--CCeeEEEEEEcCCCCEEEEEcCCCC--CCHHHHHHHHHHHHHhhcC-CEEEEECCCCCCCCHHHHHHH
Confidence 9998765 3 36666677 7888888766555542 11111110 00122466 9999988665 4677888
Q ss_pred HHHHHhCCCcEEEcCCCCCCCChhhhhccC-ceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcC-CCEEEEeeCCCCe
Q 017101 219 AKAARSAGVPVIFDAGGMDAPIPQELLNFI-DILSPNESELGRLTGMPTDSYEQISEAVVKCHKMG-VQQVLVKLGAKGS 296 (377)
Q Consensus 219 ~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~-dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g-~~~vvvT~G~~G~ 296 (377)
++.+++.++++++|+++. ...+.+.+++ |++++|++|++.++|....+.+++.++++.+.+.| ++.|++|+|++|+
T Consensus 153 ~~~a~~~g~~v~~D~~~~--~~~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~~vvvt~G~~G~ 230 (309)
T 3cqd_A 153 ISAAQKQGIRCIVDSSGE--ALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGA 230 (309)
T ss_dssp HHHHHTTTCEEEEECCHH--HHHHHTTTCCBSEECCBHHHHHHHHTSCCCSTTHHHHHHHHHHHTTSBSCEEEECGGGCE
T ss_pred HHHHHHcCCeEEEECChH--HHHHHHHhCCCEEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEEecCCce
Confidence 999999999999999742 1222234788 99999999999999976656667888889999999 9999999999999
Q ss_pred EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 297 ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
+++..+ +.+++|++ +++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.|+. .|+++++++++++
T Consensus 231 ~~~~~~-~~~~~~~~-~v~~vdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~~~~~G~~--~~~~~~v~~~~~~ 306 (309)
T 3cqd_A 231 LGVDSE-NCIQVVPP-PVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYAY 306 (309)
T ss_dssp EEECSS-CEEEECCC-SCCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-------CCCHHHHHHHHHH
T ss_pred EEEECC-ceEEEeCC-ccccCCCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcCCC--CCCHHHHHHHHHH
Confidence 776544 46778876 5789999999999999999999999999999999999999999999985 5999999999875
No 33
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=100.00 E-value=1.1e-45 Score=345.33 Aligned_cols=290 Identities=21% Similarity=0.228 Sum_probs=240.4
Q ss_pred CCEEEEccceeee-eeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 68 PPLVVVGSANFDI-YVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 68 ~~I~viG~~~vD~-~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|-+.|.+++++|+ ++.++++ .+|+..+.......+||++.|+|+++++||.++.++|.+|+| +|+++++.|++.||+
T Consensus 3 mi~tvt~np~iD~~~~~v~~~-~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~l~~~gv~ 80 (320)
T 3ie7_A 3 LIYTITLNPAIDRLLFIRGEL-EKRKTNRVIKTEFDCGGKGLHVSGVLSKFGIKNEALGIAGSD-NLDKLYAILKEKHIN 80 (320)
T ss_dssp CEEEEESSCEEEEEEEESSSC-CTTSCCCCSEEEEEEESHHHHHHHHHHHHTCCEEEEEEEEST-THHHHHHHHHHTTCC
T ss_pred eEEEEecchHHeeeEEEcCCc-cCCCeeEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHHcCCc
Confidence 6678889999999 9999998 888999999999999999999999999999999999999998 999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCC--eeEEEECCCCCCCCCcCcC---chhHHHHhhcCEEEEccCCC----HHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQ--NSIIIVGGTNMSCWPEKFG---DEDLEVVKKAGIVLLQREIP----DSVNIQ 217 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~l~---~~~~~~l~~~~~~~~~~~~~----~~~~~~ 217 (377)
++++... ++ +|+.++++++ +|+ ++++...++. ..++.+. +...+.+..++++++++.++ .+.+.+
T Consensus 81 ~~~v~~~--~~-~t~~~~~~~~-~g~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 154 (320)
T 3ie7_A 81 HDFLVEA--GT-STRECFVVLS-DDTNGSTMIPEAGFT--VSQTNKDNLLKQIAKKVKKEDMVVIAGSPPPHYTLSDFKE 154 (320)
T ss_dssp BCCEEET--TC-CCEEEEEEEE-TTCSCCEEEECCCCC--CCHHHHHHHHHHHHHHCCTTCEEEEESCCCTTCCHHHHHH
T ss_pred eEEEEec--CC-CCceEEEEEE-CCCceeEEEeCCCCC--CCHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHH
Confidence 9999555 45 8999999998 788 8876655532 1111111 11124567899999987654 367888
Q ss_pred HHHHHHhCCCcEEEcCCCCCCCChhhhhc-cCceeccCHHHHhhccCCCCC-CHHHHHHHHHHHHhcCCCEEEEeeCCCC
Q 017101 218 VAKAARSAGVPVIFDAGGMDAPIPQELLN-FIDILSPNESELGRLTGMPTD-SYEQISEAVVKCHKMGVQQVLVKLGAKG 295 (377)
Q Consensus 218 ~~~~a~~~g~~v~~D~~~~~~~~~~~ll~-~~dvl~~N~~E~~~l~g~~~~-~~~~~~~~~~~l~~~g~~~vvvT~G~~G 295 (377)
+++.+++.|+++++|++.. .....+. ++|+++||++|++.++|.... +.+++. .+.+. ++.|+||+|++|
T Consensus 155 ~~~~a~~~g~~v~~D~~~~---~l~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~----~~~~~-~~~vvvt~G~~G 226 (320)
T 3ie7_A 155 LLRTVKATGAFLGCDNSGE---YLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENIR----TLAEK-IPYLVVSLGAKG 226 (320)
T ss_dssp HHHHHHHHTCEEEEECCHH---HHHHHHHHCCSEECCBTTGGGGGSCTTCCCHHHHHH----HHTTT-CSEEEEECGGGC
T ss_pred HHHHHHhcCCEEEEECChH---HHHHHHhcCCeEEeeCHHHHHHHhCCCcCCCHHHHH----HHHhh-CCEEEEEcCCCc
Confidence 9999999999999999742 2334454 999999999999999987644 233333 33333 889999999999
Q ss_pred eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHh
Q 017101 296 SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
++++..+ +.+++|++ +++++|||||||+|.|||+++|++|+++++|+++|+++|+++|++.|+ +.|+++|++++++
T Consensus 227 ~~~~~~~-~~~~~~~~-~v~vvdttGAGDaF~ag~~~~l~~g~~~~~a~~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~ 302 (320)
T 3ie7_A 227 SICAHNG-KLYQVIPP-KVQERNDTGAGDVFVGAFIAGLAMNMPITETLKVATGCSASKVMQQDS--SSFDLEAAGKLKN 302 (320)
T ss_dssp EEEEETT-EEEEEECC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSS--SCCCHHHHHHHGG
T ss_pred eEEEeCC-cEEEEeCC-ccCCCCCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcCC--CCCCHHHHHHHhh
Confidence 9877554 57788876 578999999999999999999999999999999999999999999994 6799999999997
Q ss_pred hC
Q 017101 376 YA 377 (377)
Q Consensus 376 ~~ 377 (377)
+.
T Consensus 303 ~~ 304 (320)
T 3ie7_A 303 QV 304 (320)
T ss_dssp GC
T ss_pred Ce
Confidence 63
No 34
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=100.00 E-value=6.3e-45 Score=338.95 Aligned_cols=280 Identities=20% Similarity=0.282 Sum_probs=233.6
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+|+|++++|+++.++++|.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 17 ~~~i~viG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~ig~vG~D~~G~~l~~~L~~~GV~ 96 (312)
T 2hlz_A 17 GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVD 96 (312)
T ss_dssp CCEEEEESCCEEEEEEEESSCCCTTCEEECSEEEEEEESHHHHHHHHHHHHTCCEEEEEEECSSHHHHHHHHHHHHTTCB
T ss_pred CCcEEEECcceEEEeeccccCCCccceeecccceeccCccHHHHHHHHHHcCCceEEEEEecCchHHHHHHHHHHHcCCC
Confidence 57899999999999999999999888888877889999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEe-cCCCeeEEEECCCCCCCCCcCcCchhHH--HHhhcCEEEEccCCCHHHHHHHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQ-SDGQNSIIIVGGTNMSCWPEKFGDEDLE--VVKKAGIVLLQREIPDSVNIQVAKAAR 223 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~l~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (377)
++++... ++.+|++++++++ .+|+|+++.+.++... +.++.++ .+..++++++++.. .+...++++.++
T Consensus 97 ~~~v~~~--~~~~T~~~~~~v~~~~g~r~~~~~~~~~~~-----~~~~~~~~~~l~~~~~v~~~~~~-~~~~~~~~~~a~ 168 (312)
T 2hlz_A 97 LRYTVFQ--TTGSVPIATVIINEASGSRTILYYDRSLPD-----VSATDFEKVDLTQFKWIHIEGRN-ASEQVKMLQRID 168 (312)
T ss_dssp CTTEEEC--SSCCCCEEEEEEETTTCCEEEEEECCCCCC-----CCHHHHHTSCGGGEEEEEEECSS-HHHHHHHHHHHH
T ss_pred Cccceec--cCCCCCeEEEEEECCCCceEEEecCCcccc-----CCHHHhhHhhhccCCEEEEeccC-HHHHHHHHHHHH
Confidence 9999876 5667888888776 4799998877765433 2222222 35789999998874 455667788887
Q ss_pred hC--------CCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCC--CEEEEeeCC
Q 017101 224 SA--------GVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGV--QQVLVKLGA 293 (377)
Q Consensus 224 ~~--------g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~--~~vvvT~G~ 293 (377)
+. ++++++|+... .....++++++|++++|++|++.+ +.. +..++++.+.+... +.|+||+|+
T Consensus 169 ~~~~~~~~~~~~~v~~d~~~~-~~~~~~~l~~~dil~~n~~ea~~l-g~~-----~~~~~~~~l~~~~~~g~~vvvt~G~ 241 (312)
T 2hlz_A 169 AHNTRQPPEQKIRVSVEVEKP-REELFQLFGYGDVVFVSKDVAKHL-GFQ-----SAEEALRGLYGRVRKGAVLVCAWAE 241 (312)
T ss_dssp HHHTTSCGGGCCEEEEEECSC-CGGGGGGGGSSSEEEECHHHHHHT-TCC-----SHHHHHHHHGGGSCTTCEEEEECGG
T ss_pred HhcccccCCCCeEEEEEcccc-hHHHHHHHhcCCEEEEcHHHHHHc-CCC-----CHHHHHHHHHHhcCCCCEEEEEecc
Confidence 76 67899998754 345678999999999999999987 532 34455666665533 899999999
Q ss_pred CCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCC
Q 017101 294 KGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAI 361 (377)
Q Consensus 294 ~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~ 361 (377)
+|++++..+++.+++|+++.++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.
T Consensus 242 ~G~~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~a~~~~~l~~g~~~~~a~~~a~~~aa~~v~~~G~~ 309 (312)
T 2hlz_A 242 EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 309 (312)
T ss_dssp GCEEEECTTCCEEEECCCCCSSCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSG
T ss_pred cCeEEEccCCCEEECCCCCCCCcccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Confidence 99977755555677887655689999999999999999999999999999999999999999999964
No 35
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}
Probab=100.00 E-value=3.8e-47 Score=361.36 Aligned_cols=292 Identities=20% Similarity=0.282 Sum_probs=236.4
Q ss_pred CCCEEEEccceeeeeeccCCC------CCCCCeeee--------------CcceecCCChHHHHHHHHHHc---CCCceE
Q 017101 67 PPPLVVVGSANFDIYVEIDRL------PKVGETVAA--------------KTSQTLAGGKGANQAACGAKL---SHPTYF 123 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~------p~~~~~~~~--------------~~~~~~~GG~~~NvA~~la~L---G~~v~l 123 (377)
+.+|+++|++++|+++.+++. +++|..... ......+||++.|+|+++++| |.++.+
T Consensus 23 ~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~e~~~~~~~~~~~GG~~~N~a~~~~~L~~lG~~~~~ 102 (365)
T 3loo_A 23 DGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIF 102 (365)
T ss_dssp TTSEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGTHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHTCTTSEEE
T ss_pred CccEEEECCCeEeEEEecCHHHHHHcCCCCCCceechhHHHHHHHHHhhcCCeEEecCCHHHHHHHHHHHhhcCCCcEEE
Confidence 568999999999999999872 344443333 245689999999999999987 899999
Q ss_pred EEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc-hhHHHHhhcC
Q 017101 124 VGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD-EDLEVVKKAG 202 (377)
Q Consensus 124 i~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~ 202 (377)
+|.+|+|.+|+++++.|++.||+++++.. ++.+|++++++++ +++|+++.+.+++....++.+.. ...+.+..++
T Consensus 103 ig~vG~D~~g~~~~~~l~~~GV~~~~~~~---~~~~Tg~~~i~~~-~~~r~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T 3loo_A 103 FGCVGQDEYARILEERATSNGVNVQYQRS---ATSPTGTCAVLVT-GTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQ 178 (365)
T ss_dssp EEEEESBHHHHHHHHHHHHHTCEEEEEEE---SSSCCEEEEEEEE-TTEEEEEEECGGGGGCCGGGGGSHHHHHHHHHCS
T ss_pred EEEecCCchHHHHHHHHHHCCCceecccc---CCCCCeEEEEEEE-CCceEEEeccchHhhCCHhHcCchhhHHHHhhCC
Confidence 99999999999999999999999998876 4568999999998 88999888887766555555542 2346788999
Q ss_pred EEEEccCC---CHHHHHHHHHHHHhCCCcEEEcCCCCC-----CCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHH
Q 017101 203 IVLLQREI---PDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISE 274 (377)
Q Consensus 203 ~~~~~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~ 274 (377)
++++++.. +.+.+.++++.++++|+++++|++... ++...++++++|++++|++|++.+++....+.+++.+
T Consensus 179 ~v~i~G~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~l~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~ 258 (365)
T 3loo_A 179 FFYVSGFFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLRE 258 (365)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHHHTTCEEEEECCSTHHHHHCHHHHHHHGGGCSEEEEEHHHHHHHHHHTTCCCCCHHH
T ss_pred EEEEeeeeccCCHHHHHHHHHHHHHcCCEEEEECCchhhhHHHHHHHHHHHHhCCEEecCHHHHHHHhcccCCCCCCHHH
Confidence 99998743 346678889999999999999996421 2235678899999999999999998754333456777
Q ss_pred HHHHHHhc------CCCEEEEeeCCCCeEEEE-eCCeeEEeccCCC--CcccCccCchHHHHHHHHHHHhCCCCHHHHHH
Q 017101 275 AVVKCHKM------GVQQVLVKLGAKGSALFV-EGEKPIKQSIIPA--ARVIDTTGAGDTFTASFAVGFVEGKSREECLR 345 (377)
Q Consensus 275 ~~~~l~~~------g~~~vvvT~G~~G~~~~~-~~~~~~~~~~~~~--~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~ 345 (377)
+++.+.++ +++.||||+|++|++++. .+++.+++|+++. .+++|||||||+|.|||+++|++|+++++|++
T Consensus 259 ~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~v~~~~vvDttGAGDaF~agfl~~l~~g~~l~~a~~ 338 (365)
T 3loo_A 259 IGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFVGGFLAQLLQSRTVDVCIK 338 (365)
T ss_dssp HHHHHHTSCCSSTTSCCEEEEEETTEEEEEEETTCSCCEEECCCCCC------CTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHhhhhhccCCCCEEEEEeCCCCEEEEEecCCeEEEEeccccCCCCccCCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 88888774 889999999999998773 4455677887632 38899999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCC
Q 017101 346 FAAAAASLCVQVKGAIP 362 (377)
Q Consensus 346 ~a~~aAa~~~~~~G~~~ 362 (377)
+|+++|+.++++.|+.+
T Consensus 339 ~a~~~Aa~~v~~~G~~~ 355 (365)
T 3loo_A 339 CGIWAAREIIQRSGCTF 355 (365)
T ss_dssp HHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 99999999999999864
No 36
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*
Probab=100.00 E-value=2.4e-46 Score=352.40 Aligned_cols=285 Identities=22% Similarity=0.358 Sum_probs=229.3
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
+++|+|+|++++|++... .......+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 24 m~~ilviG~~~~D~~~~~-----------~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i~~~L~~~gVd 92 (339)
T 1tyy_A 24 MNKVWVIGDASVDLVPEK-----------QNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVD 92 (339)
T ss_dssp -CCEEEESCCEEEEEECS-----------SSEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHTTTEE
T ss_pred cCCEEEECcceeEEeccC-----------CCceEEcCCCHHHHHHHHHHHcCCCeEEEEeeCCCHHHHHHHHHHHHcCCC
Confidence 458999999999998752 233467899999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEEC--CCCCCCCCcCcCchhHHHHhhcCEEEEccC-----CCHHHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG--GTNMSCWPEKFGDEDLEVVKKAGIVLLQRE-----IPDSVNIQVA 219 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~ 219 (377)
++++.+. ++.+|+.+++.++++|+|++..+. +++.. +.++..+.+..++++++++. .+.+.+.+++
T Consensus 93 ~~~v~~~--~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~-----l~~~~~~~l~~~~~v~~~~~~l~~~~~~~~~~~~~ 165 (339)
T 1tyy_A 93 VTFLRLD--ADLTSAVLIVNLTADGERSFTYLVHPGADTY-----VSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGA 165 (339)
T ss_dssp CTTEEEC--TTSCCCEEEEC-------CEEECCSSCGGGG-----CCGGGCCCCCTTCEEEEEHHHHSSHHHHHHHHHHH
T ss_pred chheEec--CCCCCeEEEEEEcCCCCeEEEEecCCChhhh-----CCcchhhHhccCCEEEEcchhhcCcccHHHHHHHH
Confidence 9999987 777999999888888998876654 33222 22222244678899998652 2235667889
Q ss_pred HHHHhCCCcEEEcCCCCCC---------CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 017101 220 KAARSAGVPVIFDAGGMDA---------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVK 290 (377)
Q Consensus 220 ~~a~~~g~~v~~D~~~~~~---------~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT 290 (377)
+.+++.++++++|++.... ....++++++|++++|++|++.|+|.. ++.++++.+.+.|++.|+||
T Consensus 166 ~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~VvvT 240 (339)
T 1tyy_A 166 RRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGAS-----HWQDARYYLRDLGCDTTIIS 240 (339)
T ss_dssp HHHHHTTCEEEEECCCCGGGCSCGGGHHHHHHHHHHHCSEEEEEHHHHHHHHCCS-----SGGGGSSTTGGGTCSCEEEE
T ss_pred HHHHHcCCEEEEeCCCCccccCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCC-----CHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999985421 123467889999999999999999864 23455666777899999999
Q ss_pred eCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHhcccCCCCCCC
Q 017101 291 LGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEG-----KSREECLRFAAAAASLCVQVKGAIPSMP 365 (377)
Q Consensus 291 ~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g-----~~l~~al~~a~~aAa~~~~~~G~~~~~p 365 (377)
+|++|++++..+ +.+++|++ +++++|||||||+|+|||+++|++| +++++|+++|+++|+.++++.|+.+++|
T Consensus 241 ~G~~G~~~~~~~-~~~~~~~~-~v~vvDttGAGDaF~ag~~~~l~~g~~~~~~~l~~a~~~A~a~aa~~v~~~G~~~~~p 318 (339)
T 1tyy_A 241 LGADGALLITAE-GEFHFPAP-RVDVVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISNANACGAMAVTAKGAMTALP 318 (339)
T ss_dssp CGGGCEEEESSS-CEEEECCC-CCCCSCCTTHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHGGGSSSTTTTCC
T ss_pred ECCCceEEEeCC-ceEEcCCC-CCCcCCCCCchHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999776544 46778876 5789999999999999999999997 8999999999999999999999998899
Q ss_pred CHHHHHHHHhh
Q 017101 366 DRKSVLNLLQY 376 (377)
Q Consensus 366 ~~e~i~~~l~~ 376 (377)
+++++++++++
T Consensus 319 ~~~ev~~~l~~ 329 (339)
T 1tyy_A 319 FPDQLNTFLSS 329 (339)
T ss_dssp CHHHHHHHHC-
T ss_pred CHHHHHHHHhc
Confidence 99999998864
No 37
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Probab=100.00 E-value=2.3e-46 Score=353.78 Aligned_cols=295 Identities=17% Similarity=0.244 Sum_probs=239.4
Q ss_pred CCCCEEEEccceeeeeeccCC--------------------CCCCCCeeeeCcceecCCChHHHHHHHHHHc----CCC-
Q 017101 66 TPPPLVVVGSANFDIYVEIDR--------------------LPKVGETVAAKTSQTLAGGKGANQAACGAKL----SHP- 120 (377)
Q Consensus 66 ~~~~I~viG~~~vD~~~~v~~--------------------~p~~~~~~~~~~~~~~~GG~~~NvA~~la~L----G~~- 120 (377)
++.+|+++|++++|++..+++ +|..++..........+||++.|+|+++++| |.+
T Consensus 6 ~~~~v~~iG~~~lD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~~~~~~~~~~~~~GG~~~N~a~~la~L~~~~G~~~ 85 (347)
T 3otx_A 6 APLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLNVARVAQWMQQAYKGKF 85 (347)
T ss_dssp CCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGTTHHHHHHTSTTCEEEECCHHHHHHHHHHHTTGGGTTSS
T ss_pred CCCcEEEECCceeeEEEecCHHHHHHcCCCCCceEEcCHHHHHHHHHHhccCCeEEecCCHHHHHHHHHHHhcccCCCCe
Confidence 357899999999999999985 3444444444567889999999999999999 999
Q ss_pred ceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc-hhHHHHh
Q 017101 121 TYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD-EDLEVVK 199 (377)
Q Consensus 121 v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~l~ 199 (377)
+.++|.+|+|.+|+++++.|++.||+++++. . ++.+|+.++++++ +|+|+++.+.+++....++.+.. ...+.+.
T Consensus 86 ~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~-~--~~~~T~~~~i~~~-~g~r~~~~~~ga~~~~~~~~~~~~~~~~~~~ 161 (347)
T 3otx_A 86 VTYVGCIADDRYGKVLKEAAEHEGIVMAVEH-T--TKAGSGACAVCIT-GKERTLVADLGAANHLSSEHMRSPAVVRAMD 161 (347)
T ss_dssp EEEECEECSSHHHHHHHHHHHHHTCEECCEE-C--SSSCEEEEEEEEE-TTEEEEEEEEEGGGGCCHHHHTSHHHHHHHH
T ss_pred EEEEEEecCChHHHHHHHHHHHCCCceeccc-C--CCCCCeEEEEEEE-CCceeeeechhhhhcCCHHHcCchhhHHHHh
Confidence 9999999999999999999999999999985 4 5678999999998 89999888777665544444432 2246788
Q ss_pred hcCEEEEccC---CCHHHHHHHHHHHHhCCCcEEEcCCCCC-----CCChhhhhccCceeccCHHHHhhccCCCCCCHHH
Q 017101 200 KAGIVLLQRE---IPDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQ 271 (377)
Q Consensus 200 ~~~~~~~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~ 271 (377)
.++++++++. .+.+.+.++++.++++|+++++|++... ++...++++++|++++|++|++.+++....+.++
T Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~l~~~l~~~dil~~N~~Ea~~l~~~~~~~~~~ 241 (347)
T 3otx_A 162 ESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMINLSAPFIMQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWDTDC 241 (347)
T ss_dssp HCSEEEEEGGGGGTCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCHHHHHHHGGGCSEEEEEHHHHHHHHHHHTCCCCC
T ss_pred hCCEEEEeeeecccCHHHHHHHHHHHHHhCCEEEeeCchhhhHHHHHHHHHHHHhhCCEEecCHHHHHHHhcccCCCcCC
Confidence 9999999763 4567888999999999999999997321 2345678899999999999999998653222235
Q ss_pred HHHHHHHHH------hcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCC--CcccCccCchHHHHHHHHHHHhCCCCHHHH
Q 017101 272 ISEAVVKCH------KMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPA--ARVIDTTGAGDTFTASFAVGFVEGKSREEC 343 (377)
Q Consensus 272 ~~~~~~~l~------~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~--~~vvdttGAGDaF~ag~l~~l~~g~~l~~a 343 (377)
+.++++.+. +.+++.|+||+|++|++++.. ++.+++|+++. .+++|||||||+|+|||+++|++|+++++|
T Consensus 242 ~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~-~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~l~~a 320 (347)
T 3otx_A 242 VEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATK-DGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAVGKDLRRC 320 (347)
T ss_dssp HHHHHHHHHHTSCCCCSSCCEEEEEETTEEEEEEET-TEEEEECCCCCCGGGCCSSCCSHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHhhhccccCCCCEEEEEeCCCCeEEEEC-CeEEEEEecccCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHH
Confidence 667777777 468999999999999987754 45677776532 288999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCH
Q 017101 344 LRFAAAAASLCVQVKGAIPSMPDR 367 (377)
Q Consensus 344 l~~a~~aAa~~~~~~G~~~~~p~~ 367 (377)
+++|+++|+++|++.|+. +|++
T Consensus 321 ~~~a~~~aa~~v~~~G~~--~p~~ 342 (347)
T 3otx_A 321 CETGHYTAQEVIQRDGCS--FPEK 342 (347)
T ss_dssp HHHHHHHHHHHHTCC------CCS
T ss_pred HHHHHHHHHHHHcccCCC--CCCC
Confidence 999999999999999964 4654
No 38
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=100.00 E-value=1.5e-45 Score=344.22 Aligned_cols=275 Identities=22% Similarity=0.282 Sum_probs=226.8
Q ss_pred CCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcC----CCceEEEEecCCccHHHHHHHHHhC
Q 017101 68 PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLS----HPTYFVGQVGEDANGKLITDALSGC 143 (377)
Q Consensus 68 ~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG----~~v~li~~vG~D~~G~~i~~~l~~~ 143 (377)
++|+|+|++++|++... ......+||++.|+|+++++|| .++.++|.+|+|.+|+++++.|++.
T Consensus 5 ~~i~viG~~~~D~~~~~------------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~~ig~vG~D~~G~~l~~~L~~~ 72 (319)
T 3lhx_A 5 KKIAVIGECMIELSEKG------------ADVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFSQQMLDAWHGE 72 (319)
T ss_dssp EEEEEESCCEEEEEC---------------CCEEEEECHHHHHHHHHHTTSCTTTEEEEEECEECSSHHHHHHHHHHHTT
T ss_pred CceeeechhhhhhccCC------------CceEEecCChHHHHHHHHHHcCCCCCCcEEEEEEeCCCHHHHHHHHHHHHc
Confidence 57999999999998543 2347889999999999999999 8999999999999999999999999
Q ss_pred CCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCC---CCCcCcCchhHHHHhhcCEEEEccCC----C---HH
Q 017101 144 GVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMS---CWPEKFGDEDLEVVKKAGIVLLQREI----P---DS 213 (377)
Q Consensus 144 gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~l~~~~~~~l~~~~~~~~~~~~----~---~~ 213 (377)
||+++++... ++.+|+.++++++++|+|+++.+.+.... ..+..+ +...+.+..++++++++.. + .+
T Consensus 73 GV~~~~v~~~--~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~v~~~g~~~~~l~~~~~~ 149 (319)
T 3lhx_A 73 NVDTSLTQRM--ENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLASEQS-AAICEELANFDYLYLSGISLAILSPTSRE 149 (319)
T ss_dssp TEECTTCEEC--TTCCCCEEEEEC----CCEEEEECTTCGGGGTTSSSSH-HHHHHHHTTCSEEEEEHHHHHTSCHHHHH
T ss_pred CCCcceEEEc--CCCCceEEEEEeCCCCCeeEEEecCCCHHHhccCccch-hhHHHHhcCCCEEEEcCchhhhcCchhHH
Confidence 9999999887 77789999999988999999888764321 111111 2234678899999998632 2 25
Q ss_pred HHHHHHHHHHhCCCcEEEcCCCCCCC---------ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCC
Q 017101 214 VNIQVAKAARSAGVPVIFDAGGMDAP---------IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGV 284 (377)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~~~~~~---------~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~ 284 (377)
.+.++++.++++++++++|++..... ....+++++|+++||++|++.++|.. ++.++++.+.++|+
T Consensus 150 ~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~di~~~n~~E~~~l~g~~-----~~~~~~~~l~~~g~ 224 (319)
T 3lhx_A 150 KLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQ-----PVEDVIARTHNAGV 224 (319)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEEEHHHHHHHHCCC-----CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCEEEEeCcCCcccccCHHHHHHHHHHHHhhCCcccCCHHHHHHHhCCC-----CHHHHHHHHHhcCC
Confidence 67788999999999999999854311 23568899999999999999999864 46677888889999
Q ss_pred CEEEEeeCCCCeEEEEeCCeeEEeccC--CCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 017101 285 QQVLVKLGAKGSALFVEGEKPIKQSII--PAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIP 362 (377)
Q Consensus 285 ~~vvvT~G~~G~~~~~~~~~~~~~~~~--~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~ 362 (377)
+.|+||+|++|++++..++..+++|++ |.++++|||||||+|+|||+++|++|+++++|+++|+++|+.++++.|+.+
T Consensus 225 ~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~Ga~~ 304 (319)
T 3lhx_A 225 KEVVVKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAENAAKRGHLTASTVIQYRGAII 304 (319)
T ss_dssp SEEEEEETTEEEEEEETTSCCEEECCCCCCGGGCCCCTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTSSSSSC
T ss_pred CEEEEEECCCCeEEEECCcceEEcccccCCCCccCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCCCcC
Confidence 999999999999887766544477876 567899999999999999999999999999999999999999999999975
No 39
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*
Probab=100.00 E-value=6.8e-46 Score=353.53 Aligned_cols=303 Identities=19% Similarity=0.237 Sum_probs=240.3
Q ss_pred CCCEEEEccceeeeeeccCC-------CCCCCCeee--------------eCcceecCCChHHHHHHHHHHcCCC---ce
Q 017101 67 PPPLVVVGSANFDIYVEIDR-------LPKVGETVA--------------AKTSQTLAGGKGANQAACGAKLSHP---TY 122 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~-------~p~~~~~~~--------------~~~~~~~~GG~~~NvA~~la~LG~~---v~ 122 (377)
+..|++||++.+|+...++. +++ |.... .......+||++.|+|+++++||.+ +.
T Consensus 26 ~~~v~giGnalvDi~~~v~d~~l~~~~l~k-g~m~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~LG~~~~~~~ 104 (372)
T 3uq6_A 26 EGYVFGMGNPLLDIIVDADDFMYRKYNLKK-DNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCS 104 (372)
T ss_dssp TTCEEEEECCEEEEEEECCTHHHHHTTCCT-TEEEECCGGGTTHHHHHHTSSSCEEEECCHHHHHHHHHHHHHCSTTSEE
T ss_pred CCeEEEECCceeeEEEEeCHHHHHHcCCCC-CceEEcCHHHHHHHHHHhccCCeEEeCCcHHHHHHHHHHHcCCCCCcEE
Confidence 45699999999999998874 322 22211 1224567999999999999999965 89
Q ss_pred EEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCc-hhHHHHhhc
Q 017101 123 FVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD-EDLEVVKKA 201 (377)
Q Consensus 123 li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~ 201 (377)
|+|.||+|.+|+++++.|++.||+++++... ++.+|+.++++++ +|+|+++.+.+++....+.++.. ...+.+..+
T Consensus 105 fiG~VG~D~~G~~l~~~L~~~GV~~~~~~~~--~~~~T~~~~v~~~-dgert~~~~~ga~~~l~~~~i~~~~~~~~i~~a 181 (372)
T 3uq6_A 105 YVGCIGADIQGKYIKNDCSALDLVTEFQIAE--EPLMTGKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKA 181 (372)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCEECCEECC--TTCCEEEEEEEEC-SSCEEEEEEEEGGGGCCHHHHTSHHHHHHHHHC
T ss_pred EEeeecCCHHHHHHHHHHHHcCCCceeeeec--CCCCceEEEEEcC-CCceEEEEeccchhhcchhhhhhhhHHHHhhcc
Confidence 9999999999999999999999999998887 7778999888776 89999998888776655555543 334678899
Q ss_pred CEEEEccCCC---HHHHHHHHHHHHhCCCcEEEcCCCC-----CCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHH
Q 017101 202 GIVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGM-----DAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQIS 273 (377)
Q Consensus 202 ~~~~~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~-----~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~ 273 (377)
+++++.+... .+...++++.+++.+.++++|++.. .++...++++++|++++|++|++.|++......++..
T Consensus 182 ~~~~~~g~~~~~~~~~~~~~~~~a~~~g~~v~ldls~~~~~~~~~~~l~~ll~~~Dil~~Ne~Ea~~l~~~~~~~~~~~~ 261 (372)
T 3uq6_A 182 QVYYIAGFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVH 261 (372)
T ss_dssp SEEEEEGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCHHHHHHHHTTCSEEEEEHHHHHHHHHHTTCCSSHHH
T ss_pred cEEEEecccccccHHHHHHHHHHHHHcCCeEeeccccchhhhhhHHHHHHHhhcCCcccCCHHHHHHHhCCCCCchhHHH
Confidence 9999987543 3556788899999999999999742 1233457889999999999999999876544445667
Q ss_pred HHHHHHHhc-------CCCEEEEeeCCCCeEEEEeCCe---eEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHH
Q 017101 274 EAVVKCHKM-------GVQQVLVKLGAKGSALFVEGEK---PIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREEC 343 (377)
Q Consensus 274 ~~~~~l~~~-------g~~~vvvT~G~~G~~~~~~~~~---~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~a 343 (377)
+.++.+.+. +.+.+|+|+|++|++++..++. .+.+++.+..++||||||||+|+|||+++|++|+++++|
T Consensus 262 ~~a~~l~~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~v~~~~~~~vVDTtGAGDaF~agfl~~l~~g~~l~~a 341 (372)
T 3uq6_A 262 ATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITS 341 (372)
T ss_dssp HHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEESSCSSCEEECCCCCCGGGCCCCTTHHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHhhhhhhhhcCCceEEEEcCCCCceEEecCCCceeeeeeccCCCCCceeCCCchHHHHHHHHHHHHHcCCCHHHH
Confidence 777776653 5678999999999987765432 233455556689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCHHHHHHHHh
Q 017101 344 LRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 344 l~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~ 375 (377)
+++|+++|+.+|++.|+. +|++++++--|+
T Consensus 342 ~~~a~~aAa~vv~~~Ga~--lp~r~~~~lkln 371 (372)
T 3uq6_A 342 LHAAVKAAAYIICRSGFS--LGSRDSYSLKIN 371 (372)
T ss_dssp HHHHHHHHHHHHTSSSSC--CCCGGGCC----
T ss_pred HHHHHHHHHHHHcCCCCC--CCChhHHHHHhc
Confidence 999999999999999974 688887764444
No 40
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=100.00 E-value=2.6e-44 Score=333.90 Aligned_cols=289 Identities=22% Similarity=0.307 Sum_probs=240.8
Q ss_pred CCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 68 PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 68 ~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
|-++|.|++++|+++.+++ |..++..+.......+||++.|+|+++++||.++.++|.+|+ .+|+++++.|++.||++
T Consensus 1 mi~tvt~n~~~D~~~~~~~-~~~g~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~~~l~~~gv~~ 78 (306)
T 2jg5_A 1 MIYTVTFNPSIDYVIFTND-FKIDGLNRATATYKFAGGKGINVSRVLKTLDVESTALGFAGG-FPGKFIIDTLNNSAIQS 78 (306)
T ss_dssp CEEEEESSCEEEEEEECSS-CCTTSEEECSEEEEEEESHHHHHHHHHHHTTCCCEEEEEECH-HHHHHHHHHHHHTTCEE
T ss_pred CEEEEecCceEEEEEEcCC-cccCceEEeceeEecCCchHHHHHHHHHHcCCCeeEEEEecC-cchHHHHHHHHHCCCce
Confidence 3478899999999999998 588899998889999999999999999999999999999999 69999999999999999
Q ss_pred ccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHH---HhhcCEEEEccCCC----HHHHHHHHH
Q 017101 148 DYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEV---VKKAGIVLLQREIP----DSVNIQVAK 220 (377)
Q Consensus 148 ~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~---l~~~~~~~~~~~~~----~~~~~~~~~ 220 (377)
+++... + +|++++.+ .+|+++++...+++ ..+..+. ...+. +..++++++++..+ .+....+++
T Consensus 79 ~~v~~~--~--~t~~~~~~--~~g~~~~~~~~g~~--~~~~~~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 149 (306)
T 2jg5_A 79 NFIEVD--E--DTRINVKL--KTGQETEINAPGPH--ITSTQFE-QLLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQIAQ 149 (306)
T ss_dssp CCEECS--S--CCEEEEEE--ESSSEEEEECCCCC--CCHHHHH-HHHHHHTTCCTTCEEEEESCCCTTSCTTHHHHHHH
T ss_pred eEEEcC--C--CCeEEEEE--cCCCEEEEECCCCC--CCHHHHH-HHHHHHHhccCCCEEEEeCCCCCCCChHHHHHHHH
Confidence 998865 3 37777665 47888766554432 1111111 11112 45789999987665 366778899
Q ss_pred HHHhCCCcEEEcCCCCCCCChhhhhc-cCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEE
Q 017101 221 AARSAGVPVIFDAGGMDAPIPQELLN-FIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALF 299 (377)
Q Consensus 221 ~a~~~g~~v~~D~~~~~~~~~~~ll~-~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~ 299 (377)
.++++++++++|+++. ...++++ ++|+++||++|++.++|....+.+++.++++.+.+.|++.|++|+|++|++++
T Consensus 150 ~a~~~g~~v~~D~~~~---~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 226 (306)
T 2jg5_A 150 ITAQTGAKLVVDAEKE---LAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYI 226 (306)
T ss_dssp HHHHHCCEEEEECCHH---HHHHHGGGCCSEECCBHHHHHHHTTSCCCSHHHHHHHHHHHHHTTCSCEEEECGGGCEEEE
T ss_pred HHHHCCCEEEEECChH---HHHHHHhcCCeEEecCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCceEEE
Confidence 9999999999999742 2445676 69999999999999999876666778888889989999999999999999776
Q ss_pred EeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 300 VEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 300 ~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
.. ++.+++|++ +++++||+||||+|.|||+++|++|+++++|+++|+++|+.+|++.| +|+++++++++++
T Consensus 227 ~~-~~~~~~~~~-~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~a~aa~~v~~~G----~~~~~ev~~~~~~ 297 (306)
T 2jg5_A 227 DK-EISIKAVNP-QGKVVNTVGSGDSTVAGMVAGIASGLSIEKAFQQAVACGTATAFDED----LATRDAIEKIKSQ 297 (306)
T ss_dssp CS-SEEEEEECC-CCCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSS----SCCHHHHHHHHTT
T ss_pred eC-CcEEEEeCC-cccccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCC----CCCHHHHHHHHhc
Confidence 44 456778876 57899999999999999999999999999999999999999999999 5899999999875
No 41
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=100.00 E-value=3.5e-44 Score=333.07 Aligned_cols=288 Identities=24% Similarity=0.343 Sum_probs=241.2
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
-+.|.|++++|+++.++++ .+++..+.......+||++.|+|+++++||.++.++|.+|+ .+|+++++.|++.||+++
T Consensus 2 i~tv~~n~~~D~~~~~~~~-~~g~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~~~L~~~gv~~~ 79 (306)
T 2abq_A 2 IYTVTLNPSIDYIVQVENF-QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG-FTGAYVRNALEKEEIGLS 79 (306)
T ss_dssp EEEEESSCEEEEEEECTTC-CSSSEEECSEEEEEEECHHHHHHHHHHHTTCCCEEEEEEEH-HHHHHHHHHHHHTTCEEC
T ss_pred EEEEecCchheEEEEcCCc-ccCCeEEeceeEecCCchHHHHHHHHHHcCCCceEEEEecc-hhHHHHHHHHHHcCCceE
Confidence 3678899999999999996 78888888888999999999999999999999999999998 799999999999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHH---HhhcCEEEEccCCCH----HHHHHHHHH
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEV---VKKAGIVLLQREIPD----SVNIQVAKA 221 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~---l~~~~~~~~~~~~~~----~~~~~~~~~ 221 (377)
++... + +|+.++.+ ++|+++.+...++. ..+..+. ...+. +..++++++++..+. +.+.++++.
T Consensus 80 ~v~~~--~--~t~~~~~~--~~g~~~~~~~~g~~--~~~~~~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~ 150 (306)
T 2abq_A 80 FIEVE--G--DTRINVKI--KGKQETELNGTAPL--IKKEHVQ-ALLEQLTELEKGDVLVLAGSVPQAMPQTIYRSMTQI 150 (306)
T ss_dssp CEEES--S--CCEEEEEE--ESSSCEEEBCCCCC--CCHHHHH-HHHHHHTTCCTTCEEEEESCCCTTSCTTHHHHHHHH
T ss_pred EEEcC--C--CCceEEEE--eCCceEEEECCCCC--CCHHHHH-HHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHH
Confidence 99875 3 37777665 47888765444432 1111111 11112 467999999876543 677888999
Q ss_pred HHhCCCcEEEcCCCCCCCChhhhhc-cCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEE
Q 017101 222 ARSAGVPVIFDAGGMDAPIPQELLN-FIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFV 300 (377)
Q Consensus 222 a~~~g~~v~~D~~~~~~~~~~~ll~-~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~ 300 (377)
++++|+++++|+++ ....++++ ++|++++|++|++.++|....+.+++.++++.+.+.|++.|++|+|++|++++.
T Consensus 151 a~~~g~~v~~D~~~---~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 227 (306)
T 2abq_A 151 AKERGAFVAVDTSG---EALHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIPHVQRLIGEGIESILVSFAGDGALFAS 227 (306)
T ss_dssp HHTTTCEEEEECCH---HHHHHHGGGCCSEECCBHHHHHHHHTSCCCSHHHHHHHHHHHHHTTCCEEEEECGGGCEEEEE
T ss_pred HHhcCCEEEEECCh---HHHHHHHhcCCcEEecCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCceEEEe
Confidence 99999999999974 23467888 999999999999999998766677888888999999999999999999997775
Q ss_pred eCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 301 EGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 301 ~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
.+ +.+++|++ +++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++. ++|+++++++++++
T Consensus 228 ~~-~~~~~~~~-~v~vvdttGAGDaF~a~~~~~l~~g~~~~~a~~~A~a~aa~~v~~~----~~p~~~ev~~~~~~ 297 (306)
T 2abq_A 228 AE-GMFHVNVP-SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSD----GFCTREEVERLQQQ 297 (306)
T ss_dssp TT-EEEEECCC-CCCCCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSS----SCCCHHHHHHHHHH
T ss_pred CC-CEEEEeCC-CccccCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc----CCCCHHHHHHHHhh
Confidence 44 56778876 5789999999999999999999999999999999999999999998 56899999999875
No 42
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=100.00 E-value=1.6e-44 Score=336.39 Aligned_cols=282 Identities=22% Similarity=0.300 Sum_probs=232.4
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|++|+|+|++++|++.. .+++..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 1 M~~v~viG~~~iD~~~~-----~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~i~~~l~~~gv~ 75 (313)
T 3ewm_A 1 MSLIASIGELLIDLISV-----EEGDLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVD 75 (313)
T ss_dssp -CEEEEESCCEEEEEES-----SSSCTTTCCEEEEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHHHHHHHHTTCB
T ss_pred CCcEEEECceeeeeecC-----CCCCcccccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 57899999999999864 2345566677789999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCC-CCCCCcCcCchhHHHHhhcCEEEEccCC-----CHHHHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTN-MSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQVAK 220 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~ 220 (377)
++++.+. ++.+|+.+++.++. |+++++.+.+.. ....++.+. .+.+..++++++++.. +.+.+.++++
T Consensus 76 ~~~v~~~--~~~~T~~~~~~~~~-g~~~~~~~~~~a~~~l~~~~~~---~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (313)
T 3ewm_A 76 TRGIVKD--EKKHTGIVFVQLKG-ASPSFLLYDDVAYFNMTLNDIN---WDIVEEAKIVNFGSVILARNPSRETVMKVIK 149 (313)
T ss_dssp CTTEEEE--SSSCCEEEEEECSS-SSCEEEECCSSGGGCCCGGGCC---HHHHHHCSEEEEESGGGGSTTHHHHHHHHHH
T ss_pred ccceeec--CCCCceEEEEEecC-CCcceEeeccCHHHhCChhhCC---HHHhCCCCEEEEcCcccCCcchHHHHHHHHH
Confidence 9999877 77899999988765 899988876532 222223332 3567889999988742 3466778888
Q ss_pred HHHhCCCcEEEcCCCCCC----------CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 017101 221 AARSAGVPVIFDAGGMDA----------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVK 290 (377)
Q Consensus 221 ~a~~~g~~v~~D~~~~~~----------~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT 290 (377)
.++ .++++++|++.... ....++++++|++++|++|++.+++.... ..+.+.|+||
T Consensus 150 ~a~-~~~~v~~Dp~~~~~~~~~~~~~~~~~~~~~l~~~di~~~N~~E~~~l~~~~~~-------------~~~~~~vviT 215 (313)
T 3ewm_A 150 KIK-GSSLIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVE-------------VKGSMLTAIT 215 (313)
T ss_dssp HHB-TTBEEEEECCCCGGGGTTCHHHHHHHHHHHHHHCSEEEEEHHHHHHHHTTTCC-------------CCCSSEEEEE
T ss_pred Hhc-cCCEEEEeCCCChHHcCCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhccCcc-------------ccCceEEEEE
Confidence 888 47899999986431 12356788999999999999999875321 1245568999
Q ss_pred eCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHH
Q 017101 291 LGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFV--EGKSREECLRFAAAAASLCVQVKGAIPSMPDRK 368 (377)
Q Consensus 291 ~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~--~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e 368 (377)
+|++|++++..+ +.+++|++ +++++|||||||+|+|||+++|+ +|+++++|+++|+++|+++|++.|+.+ +|+++
T Consensus 216 ~G~~G~~~~~~~-~~~~~~~~-~v~vvDttGAGDaf~a~~~~~l~~~~g~~l~~a~~~A~~~aa~~v~~~G~~~-~p~~~ 292 (313)
T 3ewm_A 216 LGPKGCRLIKNE-TVVDVPSY-NVNPLDTTGAGDAFMAALLVGILKLKGLDLLKLGKFANLVAALSTQKRGAWS-TPRKD 292 (313)
T ss_dssp CGGGEEEEEETT-EEEEEECC-CCCCSCCTTHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHTTSCSSCC-CCCHH
T ss_pred ECCCCeEEEECC-eeEEcCCC-CcccCCCCCchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccCCCCC-CCCHH
Confidence 999999877655 56788886 57899999999999999999998 999999999999999999999999975 89999
Q ss_pred HHHHHHhh
Q 017101 369 SVLNLLQY 376 (377)
Q Consensus 369 ~i~~~l~~ 376 (377)
|+++++++
T Consensus 293 ev~~~l~~ 300 (313)
T 3ewm_A 293 ELLKYKEA 300 (313)
T ss_dssp HHTTSHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 43
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}
Probab=100.00 E-value=1.3e-44 Score=342.24 Aligned_cols=298 Identities=17% Similarity=0.194 Sum_probs=222.2
Q ss_pred CCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|++|+++|++++|+... .+.+......+..++||+++|+|++|++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 24 m~kv~~~GE~m~~l~p~-----~~~~~~~~~~~~~~~GG~~aNvA~~larLG~~~~~ig~vG~D~~G~~l~~~L~~~GVd 98 (351)
T 4gm6_A 24 MKQVVTIGELLMRLSTQ-----QGIPFSQTTALDIHIGGAEANVAVNLSKLGHPTRIATVVPANPIGKMAVEHLWRHQVD 98 (351)
T ss_dssp -CEEEEECCCEEEEECC-----TTCCGGGCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHHTTEE
T ss_pred cCCEEEEcceeEEecCC-----CCCCccccCeEEEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 67899999999997621 2223444667789999999999999999999999999999999999999999999999
Q ss_pred cccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCC--CCCcCcCchhHHHHhhcCEEEEccCC------CHHHHHHH
Q 017101 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMS--CWPEKFGDEDLEVVKKAGIVLLQREI------PDSVNIQV 218 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~~~~~~~~~~------~~~~~~~~ 218 (377)
++++... ++.+|+.++...+..+++.+......... ..+.++ ...+.++.++++++++.. +.+.+.++
T Consensus 99 t~~v~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~d~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 174 (351)
T 4gm6_A 99 TAFVVEA--GDRLGTYYLESGTALKAPSVVYDRQHSSFARHKSMDW--DLSELLKGIRVLHVSGITIALSTFWLEMVVKI 174 (351)
T ss_dssp CTTEEEC--SSCCCEEEEECCBTTBCCEEEEECTTCHHHHCCCCCC--CHHHHHTTEEEEEEEHHHHHHCHHHHHHHHHH
T ss_pred ccccccc--CCccceeEEEEccCCcceEEEEccccchhhhCCcccc--CHHHHHhhcccceecccchhhchhHHHHHHHH
Confidence 9999887 66555554444444555555544322111 111122 223578899999987632 23567789
Q ss_pred HHHHHhCCCcEEEcCCCCCCCC--------hhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhc-----CCC
Q 017101 219 AKAARSAGVPVIFDAGGMDAPI--------PQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKM-----GVQ 285 (377)
Q Consensus 219 ~~~a~~~g~~v~~D~~~~~~~~--------~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~-----g~~ 285 (377)
++.|+++|++|+||++.+..-+ ..++++++|++++|++|++.+++......+ ..+........ +.+
T Consensus 175 ~~~ak~~g~~v~~D~n~r~~lw~~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 253 (351)
T 4gm6_A 175 IREAKRNGIKISFDMNYRAKLWELEAAKRAYQQLLPLVDYCSAGQMDAVAFFEISSETTD-YYQAMHDKYPNIELFYATK 253 (351)
T ss_dssp HHHHHHTTCEEEEECCCCTTTSCHHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCTTCSC-HHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHcCCCcccCCCcCchhhhhhhHHHHHHHHHHhCCccccCHHHHHHHhCCCCchhH-HHHHHHhhhhhhhhhhccc
Confidence 9999999999999998764322 356789999999999999999987644332 23322222111 223
Q ss_pred EEEEeeCC--CCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCC
Q 017101 286 QVLVKLGA--KGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPS 363 (377)
Q Consensus 286 ~vvvT~G~--~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~ 363 (377)
.++++.+. .|..++..+ +.++.++++..+++|||||||+|+|||+++|++|+++++|+++|+++||++|++.|+.+.
T Consensus 254 ~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~VvDttGAGDaF~ag~l~~l~~g~~~~~al~~A~aaaal~v~~~Ga~~~ 332 (351)
T 4gm6_A 254 RTVISASHHLLQGHLWTQG-ECWESEEYAIYPIVDRVGGGDAYTAAVLHGILSEWRPDETVKFATAAAGLKHSIHGDINP 332 (351)
T ss_dssp EEEEETTEEEEEEEEEETT-EEEEEEEEEECSCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSSSCC
T ss_pred cceeeeccCCceEEEEeCC-ceEEeCCCCCCCcCCCCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 34555544 345555444 566777766678999999999999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHhh
Q 017101 364 MPDRKSVLNLLQY 376 (377)
Q Consensus 364 ~p~~e~i~~~l~~ 376 (377)
+| .+|+++|+.+
T Consensus 333 ~~-~~ev~~~l~~ 344 (351)
T 4gm6_A 333 FD-EKTIADFAAD 344 (351)
T ss_dssp CC-HHHHHHHHHC
T ss_pred CC-HHHHHHHHhC
Confidence 76 5789999863
No 44
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*
Probab=100.00 E-value=2.3e-45 Score=346.76 Aligned_cols=293 Identities=21% Similarity=0.294 Sum_probs=238.7
Q ss_pred CCCCEEEEccceeeeeeccCC-C-----CCCCCeeee--------------CcceecCCChHHHHHHHHHHcC----CCc
Q 017101 66 TPPPLVVVGSANFDIYVEIDR-L-----PKVGETVAA--------------KTSQTLAGGKGANQAACGAKLS----HPT 121 (377)
Q Consensus 66 ~~~~I~viG~~~vD~~~~v~~-~-----p~~~~~~~~--------------~~~~~~~GG~~~NvA~~la~LG----~~v 121 (377)
++++|+|+|++++|+++.+++ + +.++....+ ......+||++.|+|+++++|| .++
T Consensus 5 ~~~~v~viG~~~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~lgg~~~~~~ 84 (345)
T 1bx4_A 5 RENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQNSIKVAQWMIQQPHKAA 84 (345)
T ss_dssp CTTCEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGHHHHHHHHHHSCCEEEEECHHHHHHHHHHHHHCSSTTCE
T ss_pred ccccEEEECCcceeEEEecCHHHHHHcCCCCCcEEEchHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHhcCCCCCcE
Confidence 367899999999999999887 2 344443332 4677899999999999999996 999
Q ss_pred eEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCc-CcCc-hhHHHHh
Q 017101 122 YFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPE-KFGD-EDLEVVK 199 (377)
Q Consensus 122 ~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~l~~-~~~~~l~ 199 (377)
.++|.+|+|.+|+++++.|++.||+++++.. ++.+|+.++++++ +|+|+++...+++....++ .+.. ...+.+.
T Consensus 85 ~~ig~vG~D~~G~~i~~~L~~~gv~~~~v~~---~~~~T~~~~~~~~-~g~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (345)
T 1bx4_A 85 TFFGCIGIDKFGEILKRKAAEAHVDAHYYEQ---NEQPTGTCAACIT-GDNRSLIANLAAANCYKKEKHLDLEKNWMLVE 160 (345)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTCEEEEEEE---SSSCCCEEEEEEE-TTEEEEEEECGGGGGCCGGGTTTSHHHHHHHH
T ss_pred EEEEEeCCChhHHHHHHHHHHcCCceeeeec---CCCCCceEEEEEc-CCceEeeeccchHhhcCcccccCcHHHHHHHh
Confidence 9999999999999999999999999999874 5668999999987 7888887776665544444 4432 2345678
Q ss_pred hcCEEEEccC---CCHHHHHHHHHHHHhCCCcEEEcCCCCC-----CCChhhhhccCceeccCHHHHhhccCCCCCCHHH
Q 017101 200 KAGIVLLQRE---IPDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQ 271 (377)
Q Consensus 200 ~~~~~~~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~ 271 (377)
.++++++++. .+.+.+.++++.++++++++++|+.+.. .....++++++|++++|++|++.++|....+.++
T Consensus 161 ~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~ 240 (345)
T 1bx4_A 161 KARVCYIAGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKD 240 (345)
T ss_dssp HCSEEEEEGGGGGTCHHHHHHHHHHHHHTTCEEEEECCSHHHHHHTHHHHHHHGGGCSEEEEEHHHHHHHHHHTTCCCCC
T ss_pred hCCEEEEEEEeccCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHhccCCEEeCCHHHHHHHhcccCCCCCC
Confidence 9999999753 4567788899999999999999996421 1223568899999999999999998754323346
Q ss_pred HHHHHHHHHh------cCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCC---cccCccCchHHHHHHHHHHHhCCCCHHH
Q 017101 272 ISEAVVKCHK------MGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAA---RVIDTTGAGDTFTASFAVGFVEGKSREE 342 (377)
Q Consensus 272 ~~~~~~~l~~------~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~---~vvdttGAGDaF~ag~l~~l~~g~~l~~ 342 (377)
+.++++.+.+ .|++.|+||+|++|++++.. ++.+++|++ .+ +++|||||||+|+|||+++|++|+++++
T Consensus 241 ~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~-~~~~~~~~~-~v~~~~vvDttGAGDaf~ag~~~~l~~g~~~~~ 318 (345)
T 1bx4_A 241 IKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATE-SEVTAFAVL-DQDQKEIIDTNGAGDAFVGGFLSQLVSDKPLTE 318 (345)
T ss_dssp HHHHHHHHHTSCCSCTTSCCEEEEEETTEEEEEECS-SCEEEECCC-CCCCTTCCCHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHhcccccccCCCEEEEEeCCCCeEEEEC-CeEEEEecc-ccCcCccccCCCcchHHHHHHHHHHHcCCCHHH
Confidence 7778888888 58999999999999977654 456777775 34 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCC
Q 017101 343 CLRFAAAAASLCVQVKGAIPSMPD 366 (377)
Q Consensus 343 al~~a~~aAa~~~~~~G~~~~~p~ 366 (377)
|+++|+++|+.++++.|+. +|+
T Consensus 319 a~~~A~~~aa~~v~~~G~~--~p~ 340 (345)
T 1bx4_A 319 CIRAGHYAASIIIRRTGCT--FPE 340 (345)
T ss_dssp HHHHHHHHHHHHTTSSSSC--CCS
T ss_pred HHHHHHHHHHHHHhccCCC--CCC
Confidence 9999999999999999985 454
No 45
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=1.8e-45 Score=341.43 Aligned_cols=276 Identities=19% Similarity=0.224 Sum_probs=231.1
Q ss_pred CCCCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCC
Q 017101 66 TPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (377)
Q Consensus 66 ~~~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gV 145 (377)
++++|+|+|++++|++..++++| +++..........+||++.|+|+++++||.++.++|.+|+| +|+++++.|++.||
T Consensus 19 ~~~~v~viG~~~iD~~~~~~~~p-~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~G~~i~~~L~~~gV 96 (306)
T 3bf5_A 19 GMRFLAYFGHLNIDVLISVDSIP-REGSVNVKDLRPRFGGTAGNFAIVAQKFRIPFDLYSAVGMK-THREYLAMIESMGI 96 (306)
T ss_dssp CCEEEEEECCCEEEEEEECSCCC-SSEEEECSEEEEEEEHHHHHHHHHHHHTTCCCEEEEEEETT-TCHHHHHHHHHTTC
T ss_pred CCCcEEEECCceEEEEEecCCCC-CCceEECcceEecCCChHHHHHHHHHHcCCCeEEEEEEeCC-hHHHHHHHHHHcCC
Confidence 36789999999999999999998 78888887788999999999999999999999999999999 99999999999999
Q ss_pred CcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhC
Q 017101 146 RLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSA 225 (377)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (377)
+++++.+. ++.+|+.+++++++ |+|+++.+.+++.... +.+ . ..++++++++.. ...++++.+++
T Consensus 97 ~~~~v~~~--~~~~T~~~~~~~~~-g~r~~~~~~ga~~~~~-~~l-----~--~~~~~v~~~~~~---~~~~~~~~a~~- 161 (306)
T 3bf5_A 97 NTGHVEKF--EDESGPICYIATDG-KKQVSFMHQGAMAAWA-PQL-----A--DEYEYVHFSTGP---NYLDMAKSIRS- 161 (306)
T ss_dssp CCTTEEEE--TTCCCSEEEEEECS-SCEEEEEECTHHHHCC-CCC-----C--SCEEEEEECSSS---SHHHHHHHCCS-
T ss_pred CchheEec--CCCCCceEEEEEcC-CeeEEEEeCChhhhhh-Hhh-----c--CCCCEEEECChH---HHHHHHHHhCC-
Confidence 99999776 67789999999987 9999888776543322 222 1 678999998765 45667776654
Q ss_pred CCcEEEcCCCCCC----CChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEe
Q 017101 226 GVPVIFDAGGMDA----PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVE 301 (377)
Q Consensus 226 g~~v~~D~~~~~~----~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~ 301 (377)
++++|++...+ ....++++++|++++|++|++.+++....+.. + . .|+||+|++|++++..
T Consensus 162 --~v~~D~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~----------~--l-~vvvT~G~~Ga~~~~~ 226 (306)
T 3bf5_A 162 --KIIFDPSQEIHKYSKDELKKFHEISYMSIFNDHEYRVFREMTGLSSP----------K--V-TTIVTNGERGSSLFMD 226 (306)
T ss_dssp --EEEECCGGGGGGSCHHHHHHHHHHCSEEEEEHHHHHHHHHHHCCSSC----------S--S-CEEEEEGGGEEEEEET
T ss_pred --cEEEcCchhhhhccHHHHHHHHhcCCEEEcCHHHHHHHhCCCCcCcc----------c--E-EEEEeecccCeEEEeC
Confidence 89999985311 23456889999999999999998864322110 1 1 1999999999987754
Q ss_pred CCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc--cCCCCCCCCHHHHHHHHhh
Q 017101 302 GEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQV--KGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 302 ~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~--~G~~~~~p~~e~i~~~l~~ 376 (377)
++.+++|++ +++ +|||||||+|.|||+++|++|+++++|+++|+++|+.++++ .|+.+++|+++++++++++
T Consensus 227 -~~~~~~~~~-~v~-vDttGAGDaF~ag~~~~l~~g~~~~~a~~~A~~~aa~~v~~~~~G~~~~~p~~~ev~~~~~~ 300 (306)
T 3bf5_A 227 -GKKYDFPAI-PSS-GDTVGAGDSFRAGLYLALYNRRSIEKGMIYGTIIAHHVIDDGIENFSLNMEDLERETENYRR 300 (306)
T ss_dssp -TEEEEEECC-CCC-SCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCSTTCCCCHHHHHHHHHHHHH
T ss_pred -CcEEEecCC-cCC-CCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCccccccCCCHHHHHHHHHh
Confidence 456778876 567 99999999999999999999999999999999999999999 9998888999999998864
No 46
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=7.4e-43 Score=330.31 Aligned_cols=296 Identities=20% Similarity=0.273 Sum_probs=237.8
Q ss_pred CCCCEEEEccceeeeeeccCCCCCCCC--eeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhC
Q 017101 66 TPPPLVVVGSANFDIYVEIDRLPKVGE--TVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGC 143 (377)
Q Consensus 66 ~~~~I~viG~~~vD~~~~v~~~p~~~~--~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~ 143 (377)
..|+|+++|+.+.++. ++++ ..........+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.
T Consensus 11 ~~~~~~~~ge~l~~~~-------~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~i~~~L~~~ 83 (351)
T 2afb_A 11 HHMKVVTFGEIMLRLS-------PPDHKRIFQTDSFDVTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRKF 83 (351)
T ss_dssp CCCEEEEESCCEEEEE-------CSTTCCGGGCSEEEEEEECHHHHHHHHHHHTTSEEEEEEEECSSHHHHHHHHHHHHT
T ss_pred ccceEEEechhhheec-------CCCCccccccceeeEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHHHHHHHc
Confidence 3799999999988754 3333 344667788999999999999999999999999999999999999999999
Q ss_pred CCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCC---CCCCcCcCchhHHHHhhcCEEEEccCCCH------HH
Q 017101 144 GVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNM---SCWPEKFGDEDLEVVKKAGIVLLQREIPD------SV 214 (377)
Q Consensus 144 gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~l~~~~~~~l~~~~~~~~~~~~~~------~~ 214 (377)
||+++++... +.+|+.+++..+.+++++++.+.+... ...++.+. ....+..++++++++..+. +.
T Consensus 84 gv~~~~v~~~---~~~t~~~~v~~~~~~r~~~v~~~~~~~a~~~~~~~~~~--~~~~~~~~~~v~~~g~~~~~~~~~~~~ 158 (351)
T 2afb_A 84 GVKTDYIARG---GNRIGIYFLEIGASQRPSKVVYDRAHSAISEAKREDFD--WEKILDGARWFHFSGITPPLGKELPLI 158 (351)
T ss_dssp TCBCTTEEEC---SSCCCEEEEECCBTTBCCEEEEECTTCTTTTCCGGGCC--HHHHTTTEEEEEEETTSGGGSTTHHHH
T ss_pred CCcceeEEEC---CCcceEEEEEecCCCCcceEEEeCCCChhhhCChhhCC--HHHhhcCCCEEEEeCcccccChhHHHH
Confidence 9999999864 458998887766544445555433221 22222232 1234688999999876432 66
Q ss_pred HHHHHHHHHhCCCcEEEcCCCCCCC--------ChhhhhccCceeccCHHHHhhccCCCCC---------CHHHHHHHHH
Q 017101 215 NIQVAKAARSAGVPVIFDAGGMDAP--------IPQELLNFIDILSPNESELGRLTGMPTD---------SYEQISEAVV 277 (377)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~~~--------~~~~ll~~~dvl~~N~~E~~~l~g~~~~---------~~~~~~~~~~ 277 (377)
+.++++.+++.++++++|++.+... ...++++++|++++|++|++.|+|.... +.+++.++++
T Consensus 159 ~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 238 (351)
T 2afb_A 159 LEDALKVANEKGVTVSCDLNYRARLWTKEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAE 238 (351)
T ss_dssp HHHHHHHHHHHTCEEEEECCCCTTTCCHHHHHHHHHHHGGGCSEEEECHHHHHHHHCCCCSCC-------CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEeCCCchhcCChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCcccccccccccchhhHHHHHH
Confidence 7788999999999999999854221 2356789999999999999999987643 4566778888
Q ss_pred HHHhc-CCCEEEEeeCCCCe--------EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017101 278 KCHKM-GVQQVLVKLGAKGS--------ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAA 348 (377)
Q Consensus 278 ~l~~~-g~~~vvvT~G~~G~--------~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~ 348 (377)
.+.+. |++.|+||+|++|+ +++ .+++.+++|++ .++++|||||||+|+|||+++|++|+++++|+++|+
T Consensus 239 ~l~~~~g~~~vvvT~G~~G~~~~~~~g~~~~-~~~~~~~~~~~-~v~vvdttGAGDaF~ag~~~~l~~g~~l~~a~~~A~ 316 (351)
T 2afb_A 239 EVTRKYNFKTVGITLRESISATVNYWSVMVF-ENGQPHFSNRY-EIHIVDRVGAGDSFAGALIYGSLMGFDSQKKAEFAA 316 (351)
T ss_dssp HHHHHHCCSEEEEEEEECSCSSEEEEEEEEE-ETTEEEECCCE-EEECSCCTTHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEeCCcCccccccceeEEE-eCCcEEEcCCC-CCccCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88775 99999999999985 555 45566778876 568999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 349 AAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 349 ~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
++|+.++++.|+.+ +|+++++++++++
T Consensus 317 ~~aa~~v~~~G~~~-~~~~~ev~~~l~~ 343 (351)
T 2afb_A 317 AASCLKHTIPGDFV-VLSIEEIEKLASG 343 (351)
T ss_dssp HHHHHHTTSSSSSC-CCCHHHHHHHHTC
T ss_pred HHHHHHhCCCCCCC-CCCHHHHHHHHhc
Confidence 99999999999875 8999999999864
No 47
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*
Probab=100.00 E-value=3.1e-43 Score=336.60 Aligned_cols=287 Identities=19% Similarity=0.262 Sum_probs=235.3
Q ss_pred CCCEEEEccceeeeeeccCC-C-----CCCCCeee-------------eCcceecCCChHHHHHHHHHHc---CCCceEE
Q 017101 67 PPPLVVVGSANFDIYVEIDR-L-----PKVGETVA-------------AKTSQTLAGGKGANQAACGAKL---SHPTYFV 124 (377)
Q Consensus 67 ~~~I~viG~~~vD~~~~v~~-~-----p~~~~~~~-------------~~~~~~~~GG~~~NvA~~la~L---G~~v~li 124 (377)
+++|+|+|++++|+++.+++ + |.+++.+. .......+||++.|+|+++++| |.++.|+
T Consensus 32 ~~~vlviG~~~lD~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~GG~~~NvA~~la~Lg~~g~~v~~i 111 (383)
T 2abs_A 32 PMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKLLRKPGSAGYM 111 (383)
T ss_dssp CCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGGGGGGTGGGGCCEEEEESHHHHHHHHHHHHHCSTTSEEEE
T ss_pred CceEEEECcchheeEeccCHHHHHhcCCCCCceeechhhHHHHHHhhccccceeeCCChHHHHHHHHHHhccCCCcEEEE
Confidence 57899999999999999877 3 56666543 3456788999999999999999 8999999
Q ss_pred EEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEE
Q 017101 125 GQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIV 204 (377)
Q Consensus 125 ~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 204 (377)
|.+|+|.+|+++++.|++.||+++++. . ++.+|+.++++++ +|+|+++...+++....++ +...+.+..++++
T Consensus 112 g~vG~D~~G~~i~~~L~~~GV~~~~v~-~--~~~~T~~~~~~~~-~g~r~~~~~~~a~~~l~~~---~~~~~~l~~~~~v 184 (383)
T 2abs_A 112 GAIGDDPRGQVLKELCDKEGLATRFMV-A--PGQSTGVCAVLIN-EKERTLCTHLGACGSFRLP---EDWTTFASGALIF 184 (383)
T ss_dssp EEECSSHHHHHHHHHHHHHTCEEEEEE-C--TTCCCEEEEEEEE-TTEEEEEEECGGGGGCCCC---TTHHHHTTTCCEE
T ss_pred EEecCChhHHHHHHHHHHcCCceeeee-c--CCCCCeEEEEEEc-CCceeEeeccChhhhCChh---hhhHHHhhcCCEE
Confidence 999999999999999999999999887 3 5668999999987 7888887776665433222 2344668899999
Q ss_pred EEccC---CCHHHHHHHHHHHHh-CCCcEEEcCCCCC-----CCChhhhhccCceeccCHHHHhhccCCC-CC---C---
Q 017101 205 LLQRE---IPDSVNIQVAKAARS-AGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMP-TD---S--- 268 (377)
Q Consensus 205 ~~~~~---~~~~~~~~~~~~a~~-~g~~v~~D~~~~~-----~~~~~~ll~~~dvl~~N~~E~~~l~g~~-~~---~--- 268 (377)
++++. .+.+.+.++++.+++ .++++++|+.... .....++++++|++++|++|++.|++.. .. +
T Consensus 185 ~~~g~~~~~~~~~~~~~~~~a~~~~g~~v~~d~~~~~~~~~~~~~l~~ll~~~dil~pN~~Ea~~L~g~~~~~~~~~~~~ 264 (383)
T 2abs_A 185 YATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTAL 264 (383)
T ss_dssp EEEGGGGTTCHHHHHHHHHHHHTSTTCEEEEECCCHHHHHHCHHHHHHHHHTCSEEEEEHHHHHHHHHHHTCC-------
T ss_pred EEeeecccCCHHHHHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEeCCHHHHHHHhcccCccccccccc
Confidence 99753 456788889999999 8999999986421 1223568899999999999999997643 11 1
Q ss_pred -----HHHHHHHHHHHHhc-------CCCEEEEeeCCCCeEEEE----eCCeeEEeccCCCC---cccCccCchHHHHHH
Q 017101 269 -----YEQISEAVVKCHKM-------GVQQVLVKLGAKGSALFV----EGEKPIKQSIIPAA---RVIDTTGAGDTFTAS 329 (377)
Q Consensus 269 -----~~~~~~~~~~l~~~-------g~~~vvvT~G~~G~~~~~----~~~~~~~~~~~~~~---~vvdttGAGDaF~ag 329 (377)
.+++.++++.+.++ |++.||||+|++|++++. .+++.+++|++ .+ +++|||||||+|+||
T Consensus 265 s~~~~~~~~~~~a~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~~~-~v~~~~vvDttGAGDaF~ag 343 (383)
T 2abs_A 265 STANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVP-VVAAEKIVDTNGAGDAFVGG 343 (383)
T ss_dssp ---CHHHHHHHHHHHHHHHHTTCCCSSCCEEEEECTTSCEEEEEECTTSCEEEEEECCC-CCCGGGCCCCTTHHHHHHHH
T ss_pred ccccccccHHHHHHHHHhccccccccCCCEEEEEcCCCCeEEEEeecCCCCeEEEecCc-cCCcCCcCcCCChHHHHHHH
Confidence 45677788888773 899999999999997764 44456677765 34 789999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhcccCCC
Q 017101 330 FAVGFVEGKSREECLRFAAAAASLCVQVKGAI 361 (377)
Q Consensus 330 ~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~ 361 (377)
|+++|++|+++++|+++|+++|+.+|++.|+.
T Consensus 344 ~~~~l~~g~~l~~al~~A~a~aa~~v~~~Ga~ 375 (383)
T 2abs_A 344 FLYALSQGKTVKQCIMCGNACAQDVIQHVGFS 375 (383)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999986
No 48
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=5.9e-43 Score=323.29 Aligned_cols=275 Identities=23% Similarity=0.272 Sum_probs=218.1
Q ss_pred CCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 68 PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 68 ~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
++|+|+|++++|++ |. ...+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||
T Consensus 4 ~~v~viG~~~~D~~------p~----------~~~~GG~~~N~A~~la~LG~~~~~~~~vG~D~~g~~~~~~l~~~gv-- 65 (296)
T 2qhp_A 4 NIIVGMGEALWDVL------PE----------GKKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEIMEVFKEKQL-- 65 (296)
T ss_dssp CEEEEESCCEEEEE------TT----------EEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHHHHHHHHTTC--
T ss_pred ceEEEEchhheEec------CC----------CCCCCCHHHHHHHHHHHcCCCeeEEEEeCCChHHHHHHHHHHHcCC--
Confidence 58999999999997 22 2679999999999999999999999999999999999999999999
Q ss_pred ccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCC-----CHHHHHHHHHHH
Q 017101 148 DYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQVAKAA 222 (377)
Q Consensus 148 ~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~a 222 (377)
+++.+. ++.+|+++++.++++|++++.+..+...... ...+...+.++.++++++.+.. +.+.+.++++.+
T Consensus 66 ~~v~~~--~~~~T~~~~v~~~~~g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~a 141 (296)
T 2qhp_A 66 KNQIER--VDYPTGTVQVTLDDEGVPCYEIKEGVAWDNI--PFTDELKRLALNTRAVCFGSLAQRNEVSRATINRFLDTM 141 (296)
T ss_dssp CEEEEE--ESSCCEEEEEC------CCEEECSSCGGGCC--CCCHHHHHHHHTEEEEEECSGGGSSHHHHHHHHHHHHHS
T ss_pred CEEeec--CCCCceEEEEEECCCCCEEEEEecCChhhhC--CcchhhHhhhcCCCEEEECChHhcChHHHHHHHHHHHHH
Confidence 777776 6778999998888889888776655421111 1133445678899999886521 234566777777
Q ss_pred Hh-CCCcEEEcCCCCCCC----ChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhc-CCCEEEEeeCCCCe
Q 017101 223 RS-AGVPVIFDAGGMDAP----IPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKM-GVQQVLVKLGAKGS 296 (377)
Q Consensus 223 ~~-~g~~v~~D~~~~~~~----~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~-g~~~vvvT~G~~G~ 296 (377)
++ ++.++++|++..... ...++++++|++++|++|++.++|....+.+++.++++.+.+. |++.|+||+|++|+
T Consensus 142 ~~~~~~~v~~D~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~ 221 (296)
T 2qhp_A 142 PDIDGQLKIFDINLRQDFYTKEVLRESFKRCNILKINDEELVTISRMFGYPGIDLQDKCWILLAKYNLKMLILTCGINGS 221 (296)
T ss_dssp CCTTSCEEEEECCCCTTCCCHHHHHHHHHHCSEEEEEHHHHHHHHHHTTCTTSCHHHHHHHHHHHTTCSEEEEECGGGCE
T ss_pred HhcCCCEEEEECcCCccccCHHHHHHHHHHCCEEECCHHHHHHHhcccCCCCCCHHHHHHHHHHhcCCCEEEEeecCCCe
Confidence 76 689999999754322 2356788999999999999999875433334566778888875 99999999999999
Q ss_pred EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 017101 297 ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAAAASLCVQVKGAIPSMPD 366 (377)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~aAa~~~~~~G~~~~~p~ 366 (377)
+++.. ++.+++|++ +++++|||||||+|.|||+++|++|+++++|+++|+++|+.++++.|+.+.+|+
T Consensus 222 ~~~~~-~~~~~~~~~-~v~~vdttGAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~v~~~G~~~~~~~ 289 (296)
T 2qhp_A 222 YVFTP-GVVSFQETP-KVPVADTVGAGDSFTAAFCASILNGKSVPEAHKLAVEVSAYVCTQSGAMPELPV 289 (296)
T ss_dssp EEEET-TEEEEECCC-CCCCSCCTTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSSSSSCCCCH
T ss_pred EEEEC-CeEEEeCCC-CCccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCCCCCCCcH
Confidence 77754 457788876 578999999999999999999999999999999999999999999999876544
No 49
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}
Probab=100.00 E-value=9.4e-43 Score=324.41 Aligned_cols=282 Identities=22% Similarity=0.277 Sum_probs=223.8
Q ss_pred CCEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCC-CceEEEEecCCccHHHHHHHHHhCCCC
Q 017101 68 PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSH-PTYFVGQVGEDANGKLITDALSGCGVR 146 (377)
Q Consensus 68 ~~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~-~v~li~~vG~D~~G~~i~~~l~~~gVd 146 (377)
|+|+|+|++++|++.... ......+||++.|+|+++++||. ++.++|.+|+| +|+++++.|++.||+
T Consensus 3 ~~ilviG~~~iD~~~~~~-----------~~~~~~~GG~~~NvA~~la~LG~~~~~~ig~vG~D-~g~~~~~~L~~~gVd 70 (313)
T 3kd6_A 3 LSLLVIGSLAFDDIETPF-----------GRSDNTLGGSSTYIALSASYFTDEPIRMVGVVGSD-FGKEHFDLLHAKNID 70 (313)
T ss_dssp CCEEEESCCEEEEEECSS-----------CEEEEEEECHHHHHHHHHTTTCSSCEEEEEEEETT-SCHHHHHHHHHTTEE
T ss_pred ccEEEEeEEEEeeecCCC-----------CcccccCCCHHHHHHHHHHHhCCCceEEEEecCCC-cHHHHHHHHHHcCCC
Confidence 689999999999995321 12467899999999999999999 99999999999 999999999999999
Q ss_pred cccEEeccCCCCCCceEEEE--EecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHh
Q 017101 147 LDYMNVVKDGGVPTGHAVVM--LQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARS 224 (377)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (377)
++++.+. ++.+|....-. .+.++++++....+.... +.+...+.+..++++++.+ ++++....+++.+ +
T Consensus 71 ~~~v~~~--~~~~T~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~-~ 141 (313)
T 3kd6_A 71 TRGIQVI--EDGKTFRWAGRYHYDMNTRDTLDTQLNVFAE-----FDPHVPQYYRDSKFVCLGN-IDPELQLKVLDQI-D 141 (313)
T ss_dssp EEEEEEE--TTCCCEEEEEEECTTSSCEEEEEEECGGGTT-----CCCCCCGGGTTCSEEEECS-SCHHHHHHHHTTC-S
T ss_pred ccceEEc--CCCCeeeeeeeeeccccccceeecccchHhh-----cCccchHHHccCCEEEEcC-CCHHHHHHHHHHH-h
Confidence 9999887 65667332111 223444555444332222 2222224578899999954 5666666777766 5
Q ss_pred CCCcEEEcCCCC----CCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEE
Q 017101 225 AGVPVIFDAGGM----DAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFV 300 (377)
Q Consensus 225 ~g~~v~~D~~~~----~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~ 300 (377)
.+.++++|+... ......++++++|+++||++|++.|+|.. ++.++++.+.+.|++.|+||+|++|++++.
T Consensus 142 ~~~~v~~Dp~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 216 (313)
T 3kd6_A 142 DPKLVVCDTMNFWIEGKPEELKKVLARVDVFIVNDSEARLLSGDP-----NLVKTARIIREMGPKTLIIKKGEHGALLFT 216 (313)
T ss_dssp SCSEEEEECCHHHHHHCHHHHHHHHTTCSEEEEEHHHHHHHHSCS-----CHHHHHHHHHTTSCSEEEEECTTSCEEEEE
T ss_pred hCCEEEEcChhhhhhhhHHHHHHHHhcCCEEEeCHHHHHHHhCCC-----CHHHHHHHHHHcCCCEEEEeeCCCcEEEEE
Confidence 788899998432 12334678899999999999999999854 467788888899999999999999998775
Q ss_pred eCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHH
Q 017101 301 EGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGK-----SREECLRFAAAAASLCVQVKGAIPS-MPDRKSVLNLL 374 (377)
Q Consensus 301 ~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~-----~l~~al~~a~~aAa~~~~~~G~~~~-~p~~e~i~~~l 374 (377)
. ++.+++|+++..+++|||||||+|+|||+++|++|. ++++|+++|+++|+++|++.|+.+. .|+++|+++++
T Consensus 217 ~-~~~~~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~~~l~~a~~~a~~~aa~~v~~~G~~~~~~~~~~ev~~~l 295 (313)
T 3kd6_A 217 D-NGIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEMRKAVLYGSAMASFCVEQFGPYRYNDLDLLEVDDRY 295 (313)
T ss_dssp T-TEEEEECCCTTCCCSCCTTHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHTTSSTTGGGGTCCHHHHHHHH
T ss_pred C-CceEEeCCCCCCCcCCCCCccHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHeecCCCCCCCCCHHHHHHHH
Confidence 5 457788887433799999999999999999999998 8999999999999999999999763 58999999988
Q ss_pred hh
Q 017101 375 QY 376 (377)
Q Consensus 375 ~~ 376 (377)
++
T Consensus 296 ~~ 297 (313)
T 3kd6_A 296 QS 297 (313)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 50
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=2.1e-40 Score=306.36 Aligned_cols=268 Identities=21% Similarity=0.243 Sum_probs=207.8
Q ss_pred CEEEEccceeeeeeccCCCCCCCCeeeeCcceecCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCcc
Q 017101 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (377)
Q Consensus 69 ~I~viG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~~ 148 (377)
-|.++|.+..|.+.. .......+||++.|+|+++++||.++.++|.+|+|. +.+++.|++.||+++
T Consensus 13 ~~~~~~~~~~~~~~~------------~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~--~~~~~~L~~~gVd~~ 78 (298)
T 1vk4_A 13 MITFIGHVSKDVNVV------------DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTRED--VSKFSFLRDNGVEVV 78 (298)
T ss_dssp EEEEECCCEEEEEEE------------TTEEEEEEECHHHHHHHHHHHTTCEEEEEEEECTTT--GGGGTTTGGGTCEEE
T ss_pred eEEEeccccCceEee------------cCeEEEecCCHHHHHHHHHHHcCCceEEEEEEcCCH--HHHHHHHHHcCCceE
Confidence 366666666665543 344578999999999999999999999999999997 778899999999999
Q ss_pred cEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCc
Q 017101 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (377)
Q Consensus 149 ~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 228 (377)
++.. ..+|+.+.++ +++|+++++.+.+++.. +.++.++. ..++++++.+..+.+...++++.+++++++
T Consensus 79 ~v~~----~~~t~~~~i~-~~~g~~~~~~~~~~~~~-----l~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~ 147 (298)
T 1vk4_A 79 FLKS----PRTTSIENRY-GSDPDTRESFLISAADP-----FTESDLAF-IEGEAVHINPLWYGEFPEDLIPVLRRKVMF 147 (298)
T ss_dssp EEEC----SSCEEEEEEC------CCEEEEEECCCC-----CCGGGGGG-CCSSEEEECCSSTTSSCGGGHHHHHHHCSE
T ss_pred EEec----CCCcEEEEEE-cCCCCeeEEEecccccc-----CCHHHcCc-CCCCEEEECCcccccccHHHHHHHHHcCCE
Confidence 8753 2356666554 55678877766665433 22222221 578999987643333344677888888999
Q ss_pred EEEcCCCC------------CCCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCCe
Q 017101 229 VIFDAGGM------------DAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKGS 296 (377)
Q Consensus 229 v~~D~~~~------------~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~ 296 (377)
+++|+++. .+....++++++|++++|++|++.++|.. ++.++++.+.+.|++.|+||+ ++|+
T Consensus 148 v~~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l~~~g~~~vvvT~-~~G~ 221 (298)
T 1vk4_A 148 LSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTN-----DLRESCRIIRSFGAKIILATH-ASGV 221 (298)
T ss_dssp EEEETHHHHEEEETTEEEECCCTTHHHHGGGCSEEEEEHHHHHHHHSCS-----CHHHHHHHHHHTTCSSEEEEE-TTEE
T ss_pred EEEecCccccccccccccccchHHHHhhcccCCEEecCHHHHHHHhCCC-----CHHHHHHHHHhcCCCEEEEEc-CCCc
Confidence 99999731 12345678999999999999999999864 466777888888999999999 9999
Q ss_pred EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHH
Q 017101 297 ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVE-GKSREECLRFAAAAASLCVQVKGAIPSMPDRKSVL 371 (377)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~-g~~l~~al~~a~~aAa~~~~~~G~~~~~p~~e~i~ 371 (377)
+++.. +.+++|++ .++++|||||||+|+|||+++|++ |+++++|+++|+++|+.++++.|+.+. |+++|+.
T Consensus 222 ~~~~~--~~~~~~~~-~v~vvDttGAGDaF~a~~~~~l~~~g~~~~~a~~~A~a~aa~~v~~~G~~~~-~~~~el~ 293 (298)
T 1vk4_A 222 IVFDG--NFYEASFR-SWSLEGRTGRGDTCTAAFLVGFVFKKMSIEKATKFAAAVTSVKMRHPGPLRR-EDLEAIS 293 (298)
T ss_dssp EEESS--SEEEEECC-CSSGGGGTTHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSSCCG-GGGGGCC
T ss_pred EEEeC--CEEEeccC-CcccCCCcCccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCCCCCC-CCHHHHh
Confidence 77654 46778875 678999999999999999999999 999999999999999999999999865 7777653
No 51
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=99.92 E-value=7.1e-25 Score=203.56 Aligned_cols=215 Identities=19% Similarity=0.193 Sum_probs=151.3
Q ss_pred CceEEEEecCCccHHHHHHHHHhCCCCcccEEeccCCCCCCceEEEEEecCCCeeEEEECCCCCCCCCcCcCchhHHH--
Q 017101 120 PTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEV-- 197 (377)
Q Consensus 120 ~v~li~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-- 197 (377)
.+.++|.+|+|. |+++ |++.||+++++....- ..+|++.+ . .| . ...++.+. ...+.
T Consensus 12 ~~~~~g~vG~D~-g~~i---L~~~GV~~~~v~~~~~-~~~t~~~~--~--~g---------~--~l~~~~i~-~~~~~~~ 70 (312)
T 2yxt_A 12 SHVIRGYVGNRA-ATFP---LQVLGFEIDAVNSVQF-SNHTGYAH--W--KG---------Q--VLNSDELQ-ELYEGLR 70 (312)
T ss_dssp EEESSSCSTHHH-HHHH---HHHTTCEEEEEEEEEE-SSCTTSSC--C--CE---------E--ECCHHHHH-HHHHHHH
T ss_pred cccCCCccchHh-hHHH---HHHcCCeEEEEEEEEe-cCCCCcCC--c--cC---------c--cCCHHHHH-HHHHHHH
Confidence 356788999998 9998 9999999988764200 11333221 0 11 0 01111111 11112
Q ss_pred ---HhhcCEEEEccCCCH---HHHHHHHHHHHhCCCc--EEEcCCCCCC-----------C---Chh-hhhccCceeccC
Q 017101 198 ---VKKAGIVLLQREIPD---SVNIQVAKAARSAGVP--VIFDAGGMDA-----------P---IPQ-ELLNFIDILSPN 254 (377)
Q Consensus 198 ---l~~~~~~~~~~~~~~---~~~~~~~~~a~~~g~~--v~~D~~~~~~-----------~---~~~-~ll~~~dvl~~N 254 (377)
+..++++++....+. +.+.++++.++++|.+ +++||..... . ... .+++++|+++||
T Consensus 71 ~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~~~~~~sg~~~~~~~~~~~l~~~ll~~~dil~pN 150 (312)
T 2yxt_A 71 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPEDLLPVYKEKVVPLADIITPN 150 (312)
T ss_dssp HTTCCCCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTCEEEECCCCEEC--CCCEESSCTTHHHHHHHTTGGGCSEECCC
T ss_pred hcCCccCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEECCCcCCCCCCCCCeeCCHHHHHHHHHHhhhhCCEEcCC
Confidence 456888776433343 3345778888888765 8899864321 1 122 378999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCC------eEEE-------EeCC----eeEEeccCCCCccc
Q 017101 255 ESELGRLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKG------SALF-------VEGE----KPIKQSIIPAARVI 317 (377)
Q Consensus 255 ~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G------~~~~-------~~~~----~~~~~~~~~~~~vv 317 (377)
++|++.|+|....+.+++.++++.+++.|++.|+||.|+.| ++++ ..++ +.+++|++ .+++
T Consensus 151 ~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvvT~G~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v- 228 (312)
T 2yxt_A 151 QFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIR-KVDA- 228 (312)
T ss_dssp HHHHHHHHSCCCCSHHHHHHHHHHHHHHSCSEEEECCCSCCCTTCTTEEEEEEEEEC----CCCCEEEEEEEEE-CCSS-
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCCceEEEEEeccccccccccccceEEEeec-ccCC-
Confidence 99999999987667778888899999999999999988764 6655 2322 56677765 4666
Q ss_pred CccCchHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhcc
Q 017101 318 DTTGAGDTFTASFAVGFVE-GKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 318 dttGAGDaF~ag~l~~l~~-g~~l~~al~~a~~aAa~~~~~ 357 (377)
||+||||+|.|||+++|++ |+++++|+++|+++|+.++++
T Consensus 229 dttGAGDaf~a~~~~~l~~~g~~l~~a~~~A~a~a~~~v~~ 269 (312)
T 2yxt_A 229 VFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSTLHHVLQR 269 (312)
T ss_dssp CCSSHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 999999999999999888753
No 52
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=99.90 E-value=1.2e-23 Score=192.86 Aligned_cols=156 Identities=20% Similarity=0.160 Sum_probs=123.7
Q ss_pred cCEEEEccCCCHHHHHHHHHHHHhCCCc-EEEcCCCCCCC-----------Chh-hhhccCceeccCHHHHhhccCC-CC
Q 017101 201 AGIVLLQREIPDSVNIQVAKAARSAGVP-VIFDAGGMDAP-----------IPQ-ELLNFIDILSPNESELGRLTGM-PT 266 (377)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~~-----------~~~-~ll~~~dvl~~N~~E~~~l~g~-~~ 266 (377)
++++++....+.+....+++.+++.+.+ +++||...... ... .+++++|+++||+.|++.|+|. ..
T Consensus 95 ~~~v~~G~l~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~g~~l~~~~~~~~l~~~ll~~~dil~pN~~Ea~~L~g~~~~ 174 (288)
T 1jxh_A 95 IDTTKIGMLAETDIVEAVAERLQRHHVRNVVLDTVMLAKSGDPLLSPSAIETLRVRLLPQVSLITPNLPEAAALLDAPHA 174 (288)
T ss_dssp CSEEEECCCCSHHHHHHHHHHHHHTTCCSEEEECCCC------CCCHHHHHHHHHHTGGGCSEEECBHHHHHHHHTCCCC
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCeEEEcCcccCCCCCccCCHHHHHHHHHHHHhhCcEEcCCHHHHHHHcCCCCC
Confidence 6777765544667788899999999996 99998754210 122 3678999999999999999998 66
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeeCCCC-----eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHH
Q 017101 267 DSYEQISEAVVKCHKMGVQQVLVKLGAKG-----SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSRE 341 (377)
Q Consensus 267 ~~~~~~~~~~~~l~~~g~~~vvvT~G~~G-----~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~ 341 (377)
.+.+++.++++.+.+.|++.|++|.|++| ++++..+ +.++++++ ..+++||+||||+|+|+|+++|++|++++
T Consensus 175 ~~~~~~~~~a~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~-~~~~~~~~-~~~~vdttGAGD~f~a~~~a~l~~g~~~~ 252 (288)
T 1jxh_A 175 RTEQEMLAQGRALLAMGCEAVLMKGGHLEDAQSPDWLFTRE-GEQRFSAP-RVNTKNTHGTGCTLSAALAALRPRHRSWG 252 (288)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEBC---------CEEECSS-CEEEC----CCCCSCCBTHHHHHHHHHHHHGGGSSSHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeccCCCCCceeEEEEECC-eEEEEecc-ccCCCCCCCchHHHHHHHHHHHHcCCCHH
Confidence 66678888899999999999999999999 7666444 46677765 57889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 017101 342 ECLRFAAAAASLCVQVK 358 (377)
Q Consensus 342 ~al~~a~~aAa~~~~~~ 358 (377)
+|+++|+++++.++++.
T Consensus 253 ~A~~~A~a~a~~~v~~~ 269 (288)
T 1jxh_A 253 ETVNEAKAWLSAALAQA 269 (288)
T ss_dssp HHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999765
No 53
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=99.90 E-value=1.1e-23 Score=192.74 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=124.2
Q ss_pred HhhcCEEEEccCCCH---HHHHHHHHHHHh--CCCcEEEcCCCCCC--------CCh----hhhhccCceeccCHHHHhh
Q 017101 198 VKKAGIVLLQREIPD---SVNIQVAKAARS--AGVPVIFDAGGMDA--------PIP----QELLNFIDILSPNESELGR 260 (377)
Q Consensus 198 l~~~~~~~~~~~~~~---~~~~~~~~~a~~--~g~~v~~D~~~~~~--------~~~----~~ll~~~dvl~~N~~E~~~ 260 (377)
+..++++++....+. +.+.++++.+++ .++++++||..... ... ..+++++|+++||+.|++.
T Consensus 86 ~~~~~~v~~G~l~~~~~~~~~~~~l~~a~~~~~g~~vv~Dp~~~~~~~~~~~~~~~~~~~~~~ll~~~dil~pN~~E~~~ 165 (283)
T 2ddm_A 86 LRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEI 165 (283)
T ss_dssp CTTCCEEEECCCSCHHHHHHHHHHHHHHHTTCTTCEEEECCCCEETTTEECSCTTHHHHHHHTTGGGCSEECCBHHHHHH
T ss_pred cccCCEEEECCcCCHHHHHHHHHHHHHHHhcCCCCeEEECCcccCCCCCcccCHHHHHHHHHhhhhhceEecCCHHHHHH
Confidence 346788887543332 345667777877 78999999864321 111 3478899999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCC-------CeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHH
Q 017101 261 LTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAK-------GSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVG 333 (377)
Q Consensus 261 l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~-------G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~ 333 (377)
|+|....+.+++.++++.+.+.|++.|++|.|++ |++++.. ++.++++++ .+. +||+||||+|.|+|+++
T Consensus 166 L~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~G~~~~~~-~~~~~~~~~-~v~-vdt~GAGDaf~a~~~~~ 242 (283)
T 2ddm_A 166 LTGKNCRDLDSAIAAAKSLLSDTLKWVVVTSASGNEENQEMQVVVVTA-DSVNVISHS-RVK-TDLKGTGDLFCAQLISG 242 (283)
T ss_dssp HHTSCCSSHHHHHHHHHHHCCSSCCEEEEEC-------CEEEEEEEET-TEEEEEEEE-CCC-CCCCCHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHcCCCEEEEccccCccCCCceeEEEEeC-CceEEEeec-eeC-CCCCChHHHHHHHHHHH
Confidence 9998766667888888999888999999999999 7876654 456677776 344 89999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHhcccC
Q 017101 334 FVEGKSREECLRFAAAAASLCVQVKG 359 (377)
Q Consensus 334 l~~g~~l~~al~~a~~aAa~~~~~~G 359 (377)
|++|+++++|+++|+++++.++++..
T Consensus 243 l~~g~~~~~A~~~A~a~a~~~v~~~~ 268 (283)
T 2ddm_A 243 LLKGKALTDAVHRAGLRVLEVMRYTQ 268 (283)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998643
No 54
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=99.89 E-value=1.8e-22 Score=182.21 Aligned_cols=155 Identities=23% Similarity=0.257 Sum_probs=125.3
Q ss_pred cCEEEEccCCCHHHHHHHHHHHHhCC-CcEEEcCCCCCCC-----------Ch-hhhhccCceeccCHHHHhhccCCCCC
Q 017101 201 AGIVLLQREIPDSVNIQVAKAARSAG-VPVIFDAGGMDAP-----------IP-QELLNFIDILSPNESELGRLTGMPTD 267 (377)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~~-----------~~-~~ll~~~dvl~~N~~E~~~l~g~~~~ 267 (377)
.+.+.+....+.+....+++.+++.+ +++++|+...... .. ..+++++|+++||+.|++.|+|....
T Consensus 71 ~~~v~~G~l~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~g~~l~~~~~~~~~~~~ll~~~dil~pN~~E~~~L~g~~~~ 150 (258)
T 1ub0_A 71 LHAAKTGALGDAAIVEAVAEAVRRFGVRPLVVDPVMVAKSGDPLLAKEAAAALKERLFPLADLVTPNRLEAEALLGRPIR 150 (258)
T ss_dssp CSEEEECCCCSHHHHHHHHHHHHHTTCCSEEECCCC---------CHHHHHHHHHHTGGGCSEECCBHHHHHHHHCSCCC
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhCCCCcEEECCeeecCCCCcccChHHHHHHHHhhcccCeEEeCCHHHHHHHhCCCCC
Confidence 56666644334567778888899988 8999999754211 11 34678999999999999999998766
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeeCCC-C----eEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHH
Q 017101 268 SYEQISEAVVKCHKMGVQQVLVKLGAK-G----SALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREE 342 (377)
Q Consensus 268 ~~~~~~~~~~~l~~~g~~~vvvT~G~~-G----~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~ 342 (377)
+.++..++++.+.++|++.|++|.|++ | ++++. +++.++++++ ..+++||+||||+|.|+|+++|++|+++++
T Consensus 151 ~~~~~~~~a~~l~~~g~~~vvvt~g~~~G~~~~~~~~~-~~~~~~~~~~-~~~~~dt~GaGD~f~a~~~~~l~~g~~~~~ 228 (258)
T 1ub0_A 151 TLKEAEEAAKALLALGPKAVLLKGGHLEGEEAVDLLAT-RGGVLRFSAP-RVHTRNTHGTGCTLSAAIAALLAKGRPLAE 228 (258)
T ss_dssp SHHHHHHHHHHHHTTSCSCEEEEEEECC---EEEEEEE-TTEEEEEEEC-CCCCSCCTTHHHHHHHHHHHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCCceEEEEEe-CCeEEEEecc-ccCCCCCCChHHHHHHHHHHHHHcCCCHHH
Confidence 667888889999999999999999998 8 65554 4456777765 578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 017101 343 CLRFAAAAASLCVQV 357 (377)
Q Consensus 343 al~~a~~aAa~~~~~ 357 (377)
|+++|+++++.++++
T Consensus 229 a~~~a~~~~~~~~~~ 243 (258)
T 1ub0_A 229 AVAEAKAYLTRALKT 243 (258)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988865
No 55
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=99.86 E-value=2.6e-20 Score=169.30 Aligned_cols=157 Identities=21% Similarity=0.249 Sum_probs=128.4
Q ss_pred hcCEEEEccCCCHHHHHHHHHHHHhCCC-cEEEcCCCCCCC-----------Ch-hhhhccCceeccCHHHHhhccCCC-
Q 017101 200 KAGIVLLQREIPDSVNIQVAKAARSAGV-PVIFDAGGMDAP-----------IP-QELLNFIDILSPNESELGRLTGMP- 265 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~~-----------~~-~~ll~~~dvl~~N~~E~~~l~g~~- 265 (377)
..+.+++....+.+....+++.+++.+. ++++||...... .. +++++++|+++||+.|++.|+|.+
T Consensus 74 ~~d~v~~G~l~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~l~~~ll~~~diltpN~~E~~~L~g~~~ 153 (271)
T 2i5b_A 74 GVDAMKTGMLPTVDIIELAAKTIKEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLATVITPNLFEASQLSGMDE 153 (271)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHHHHTTCSSEEECCCCSSBCSSSBSSHHHHHHHHHHTGGGCSEECCBHHHHHHHHTCCC
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhCCCCCEEEcCCcCCCCCCcCcCHHHHHHHHHHhHhhCcEEcCCHHHHHHHhCCCC
Confidence 4677777543345677888899999898 699998754211 12 256789999999999999999987
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeeCC--CCe----EEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCC
Q 017101 266 TDSYEQISEAVVKCHKMGVQQVLVKLGA--KGS----ALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKS 339 (377)
Q Consensus 266 ~~~~~~~~~~~~~l~~~g~~~vvvT~G~--~G~----~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~ 339 (377)
..+.++..++++.+.+.|.+.|++|.|. +|+ +++ .+++.++++.+ ..+++||+||||+|.|+|+++|++|++
T Consensus 154 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~dt~GaGD~f~a~~~~~l~~g~~ 231 (271)
T 2i5b_A 154 LKTVDDMIEAAKKIHALGAQYVVITGGGKLKHEKAVDVLY-DGETAEVLESE-MIDTPYTHGAGCTFSAAVTAELAKGAE 231 (271)
T ss_dssp CCSHHHHHHHHHHHHTTTCSEEEEECGGGSCSSSEEEEEE-CSSCEEEEEEC-CCCCSCCBTHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCceEEEEE-eCCeEEEEecc-ccCCCCCCChHHHHHHHHHHHHHcCCC
Confidence 6667788888999999999999999999 785 444 34456677765 578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 017101 340 REECLRFAAAAASLCVQVK 358 (377)
Q Consensus 340 l~~al~~a~~aAa~~~~~~ 358 (377)
+++|+++|+++++.++++.
T Consensus 232 ~~~A~~~A~~~~~~~~~~~ 250 (271)
T 2i5b_A 232 VKEAIYAAKEFITAAIKES 250 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999764
No 56
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=99.79 E-value=7.5e-19 Score=160.97 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=120.5
Q ss_pred hhcCEEEEccCCCH----HHHHHHHHHHHhCC--CcEEEcCCCCCC-----------CCh-hhhhccCceeccCHHHHhh
Q 017101 199 KKAGIVLLQREIPD----SVNIQVAKAARSAG--VPVIFDAGGMDA-----------PIP-QELLNFIDILSPNESELGR 260 (377)
Q Consensus 199 ~~~~~~~~~~~~~~----~~~~~~~~~a~~~g--~~v~~D~~~~~~-----------~~~-~~ll~~~dvl~~N~~E~~~ 260 (377)
...|++ ..|.++. +.+.++++.+++++ .++++||.-.+. ... +.+++++|+++||+.|++.
T Consensus 76 ~~~d~v-~~G~l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~~~~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~ 154 (289)
T 3pzs_A 76 KDCDAV-LSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVAPGVAEFFCNEALPASDMIAPNLLELEQ 154 (289)
T ss_dssp GGCCEE-EECCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEETTTEECSCHHHHHHHHHTHHHHCSEECCCHHHHHH
T ss_pred cCCCEE-EECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccCCCCcccCHHHHHHHHHHhhccCCEEeCCHHHHHH
Confidence 477875 5565543 34556677777666 789999742211 111 2478899999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeC-CCCe-------EEEEeCCeeEEeccCCCCcc--cCccCchHHHHHHH
Q 017101 261 LTGMPTDSYEQISEAVVKCHKMGVQQVLVKLG-AKGS-------ALFVEGEKPIKQSIIPAARV--IDTTGAGDTFTASF 330 (377)
Q Consensus 261 l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G-~~G~-------~~~~~~~~~~~~~~~~~~~v--vdttGAGDaF~ag~ 330 (377)
|+|.+..+.+++.++++.+.++|++.|++|.| .+|+ +++. +++.++++.+ ..++ +|++||||+|.|+|
T Consensus 155 L~g~~~~~~~~~~~aa~~l~~~g~~~Vvvt~~~~~G~~~~~~~~~~~~-~~~~~~~~~~-~~~~~v~dt~GaGD~f~a~~ 232 (289)
T 3pzs_A 155 LSGERVENVEQAVQVARSLCARGPKVVLVKHLSRAGYHADCFEMLLVT-ADDAWHICRP-LVDFGKRQPVGVGDLTSGLL 232 (289)
T ss_dssp HHTSCCCSHHHHHHHHHHHHTTSCSEEEECCCGGGSSCTTEEEEEEEC-SSCEEEEEEE-CCCCTTSCCTTHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHCCCEEEEecccCCCCCCCeEEEEEEe-CCeEEEEEee-eecCCCCCCCcHHHHHHHHH
Confidence 99988777888999999999999999999985 5776 4443 4445666544 4555 89999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 017101 331 AVGFVEGKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 331 l~~l~~g~~l~~al~~a~~aAa~~~~~ 357 (377)
++++++|+++++|+++|+++++.++++
T Consensus 233 ~~~l~~g~~~~~A~~~A~~~~~~~i~~ 259 (289)
T 3pzs_A 233 LVNLLKGEPLDKALEHVTAAVYEVMLK 259 (289)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987777654
No 57
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=99.77 E-value=2.3e-18 Score=156.94 Aligned_cols=156 Identities=17% Similarity=0.097 Sum_probs=120.4
Q ss_pred hcCEEEEccCCCHHHHHHHHHHHHhC-CCcEEEcCCCCC----CC--------ChhhhhccCceeccCHHHHhhccCCCC
Q 017101 200 KAGIVLLQREIPDSVNIQVAKAARSA-GVPVIFDAGGMD----AP--------IPQELLNFIDILSPNESELGRLTGMPT 266 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~----~~--------~~~~ll~~~dvl~~N~~E~~~l~g~~~ 266 (377)
..+.+.+.--...+....+.+..++. +.++++||.... +. ...++++++|+++||+.|++.|+|.+.
T Consensus 74 ~~daik~G~l~s~~~i~~v~~~l~~~~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~~ll~~adiitpN~~Ea~~L~g~~~ 153 (282)
T 3h74_A 74 HFDQALIGYVGSVALCQQITTYLEQQTLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLTGAPY 153 (282)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHHHHSCCSEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCCHHHHHHHHTCCC
T ss_pred ccCEEEECCCCCHHHHHHHHHHHHHCCCCcEEEcCeeecCCCCCCCCCHHHHHHHHHHhccCCEECCCHHHHHHHhCCCC
Confidence 45666663222455566666666664 678999996331 11 124688999999999999999999876
Q ss_pred CCHHHHHHHHHHHHh-cCC-CEEEEeeCC----CCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCH
Q 017101 267 DSYEQISEAVVKCHK-MGV-QQVLVKLGA----KGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSR 340 (377)
Q Consensus 267 ~~~~~~~~~~~~l~~-~g~-~~vvvT~G~----~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l 340 (377)
.+.+++.++++.+.+ +|+ +.|++|.|. .|++++..+++.++++.+ ... +||+|+||+|.|+|+++|++|+++
T Consensus 154 ~~~~~~~~aa~~L~~~~g~~~~Vvvt~G~~~~~~g~~~~~~~~~~~~~~~~-~v~-~dt~GaGD~fsaai~a~l~~g~~l 231 (282)
T 3h74_A 154 QVTPDLEVILPALQAQLKTGAHAVITDVQRADQIGCAWLDEAGHVQYCGAR-RLP-GHYNGTGDTLAAVIAGLLGRGYPL 231 (282)
T ss_dssp CSSCCHHHHHHHHHTTSCTTCEECEEEEEETTEEEEEEECTTSCEEEEEEE-CCS-SCCTTHHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEecCCCCceEEEEEeCCCeEEEEEec-CCC-CCCcCHHHHHHHHHHHHHHCCCCH
Confidence 666678889999998 899 999999984 677555334455566654 343 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 017101 341 EECLRFAAAAASLCVQV 357 (377)
Q Consensus 341 ~~al~~a~~aAa~~~~~ 357 (377)
++|+++|+++++.++++
T Consensus 232 ~~A~~~A~~~~~~ai~~ 248 (282)
T 3h74_A 232 APTLARANQWLNMAVAE 248 (282)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998888764
No 58
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=99.76 E-value=4.9e-18 Score=155.47 Aligned_cols=155 Identities=18% Similarity=0.165 Sum_probs=117.6
Q ss_pred hcCEEEEccCC-CH---HHHHHHHHHHHhCCCcEEEcCCCCCC----C--------ChhhhhccCceeccCHHHHhhccC
Q 017101 200 KAGIVLLQREI-PD---SVNIQVAKAARSAGVPVIFDAGGMDA----P--------IPQELLNFIDILSPNESELGRLTG 263 (377)
Q Consensus 200 ~~~~~~~~~~~-~~---~~~~~~~~~a~~~g~~v~~D~~~~~~----~--------~~~~ll~~~dvl~~N~~E~~~l~g 263 (377)
..+.+.+ |.+ .. +.+.++++.+++.++++++||..... . ...++++++|+++||+.|++.|+|
T Consensus 77 ~~~aik~-G~l~s~~~i~~v~~~l~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g 155 (291)
T 3mbh_A 77 QFDAIYT-GYLGSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLD 155 (291)
T ss_dssp CCSEEEE-CCCSSTTHHHHHHHHHHHHCCTTCEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCBHHHHHHHHT
T ss_pred ccCEEEE-CCCCCHHHHHHHHHHHHHhcCCCCcEEECceeeeCCCCCCCCCHHHHHHHHHHhccCCEEeCCHHHHHHHhC
Confidence 3456655 333 22 33445555555567899999974321 1 124689999999999999999999
Q ss_pred CCCC---CHHHHHHHHHHHHhcCCCEEEEeeCC-------CCeEEEEeC-CeeEEeccCCCCcccCccCchHHHHHHHHH
Q 017101 264 MPTD---SYEQISEAVVKCHKMGVQQVLVKLGA-------KGSALFVEG-EKPIKQSIIPAARVIDTTGAGDTFTASFAV 332 (377)
Q Consensus 264 ~~~~---~~~~~~~~~~~l~~~g~~~vvvT~G~-------~G~~~~~~~-~~~~~~~~~~~~~vvdttGAGDaF~ag~l~ 332 (377)
.+.. +.+++.++++.+.++|++.|+||.|. .|++++..+ ++.++++.+ ... +|++|+||+|.|+|++
T Consensus 156 ~~~~~~~~~~~~~~aa~~L~~~g~~~Vvvtgg~~~~~~g~~g~~~~~~~~~~~~~~~~~-~~~-~dt~GaGD~f~aai~a 233 (291)
T 3mbh_A 156 EPYKADSTDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTCP-YLP-AHYPGTGDTFTSVITG 233 (291)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTSCSEEEEEEEEETTEEEEEEEEEEETTTTEEEEEEES-CCG-GGSTTHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCEEEEEeccccCCCCcEEEEEEeCCCCeEEEEEec-ccC-CCCCChHHHHHHHHHH
Confidence 8653 66788899999999999999999653 566666543 345566664 444 8999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhcc
Q 017101 333 GFVEGKSREECLRFAAAAASLCVQV 357 (377)
Q Consensus 333 ~l~~g~~l~~al~~a~~aAa~~~~~ 357 (377)
+|++|+++++|+++|+++++.++++
T Consensus 234 ~l~~g~~l~~A~~~A~~~~~~ai~~ 258 (291)
T 3mbh_A 234 SLMQGDSLPMALDRATQFILQGIRA 258 (291)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888765
No 59
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=99.72 E-value=1.1e-16 Score=147.03 Aligned_cols=153 Identities=20% Similarity=0.157 Sum_probs=113.5
Q ss_pred hcCEEEEccCCC-HH---HHHHHHHHHHhCC------CcEEEcCCCCCC--C--------ChhhhhccCceeccCHHHHh
Q 017101 200 KAGIVLLQREIP-DS---VNIQVAKAARSAG------VPVIFDAGGMDA--P--------IPQELLNFIDILSPNESELG 259 (377)
Q Consensus 200 ~~~~~~~~~~~~-~~---~~~~~~~~a~~~g------~~v~~D~~~~~~--~--------~~~~ll~~~dvl~~N~~E~~ 259 (377)
.+|++.. |.++ .+ .+.++++..++.+ .++++||.-.+. . ...++++++|+++||..|++
T Consensus 76 ~~daV~t-G~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~G~~~~~~~~~~~~~~Ll~~adiitPN~~Ea~ 154 (300)
T 3zs7_A 76 NYRYILT-GYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGIMYCKKEVLDAYRELVPLADIVTPNYFEAS 154 (300)
T ss_dssp GCSEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC---------CTHHHHHHHHGGGCSEECCCHHHHH
T ss_pred cCCEEEE-CCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccCCCeecCHHHHHHHHHHhhhCCEecCCHHHHH
Confidence 5677554 5554 33 3344555555444 789999952211 1 12458999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHhcCCCEEEEeeCCCC----e--EEEEeC------CeeEEeccCCCCcccCccCchHHHH
Q 017101 260 RLTGMPTDSYEQISEAVVKCHKMGVQQVLVKLGAKG----S--ALFVEG------EKPIKQSIIPAARVIDTTGAGDTFT 327 (377)
Q Consensus 260 ~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G----~--~~~~~~------~~~~~~~~~~~~~vvdttGAGDaF~ 327 (377)
.|+|.+..+.+++.++++.+++.|++.|+||.|..| + .++..+ ++.++++.+ .++. |++|+||+|.
T Consensus 155 ~L~g~~~~~~~~~~~aa~~L~~~G~~~Vvvt~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~v~~-~~~GtGD~fs 232 (300)
T 3zs7_A 155 LLSGVTVNDLSSAILAADWFHNCGVAHVIIKSFREQENPTHLRFLYSVKEGSEAAVRRFSGVVP-YHEG-RYTGTGDVFA 232 (300)
T ss_dssp HHHSSCCCSHHHHHHHHHHHHHHTCSEEEEEEEC---CCSEEEEEEEECCSTTSCCEEEEEEEE-CCSS-CBTTHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCCEEEEecCcCCCCCceEEEEEeccccccCCCeEEEEEec-cCCC-CCcCHHHHHH
Confidence 999998888888999999999999999999999988 2 344433 345566554 4454 8999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Q 017101 328 ASFAVGFVEGKSREECLRFAAAAASLCVQ 356 (377)
Q Consensus 328 ag~l~~l~~g~~l~~al~~a~~aAa~~~~ 356 (377)
|+|+++| +|+++++|+++|+++...++.
T Consensus 233 aal~a~l-~g~~~~~Av~~A~~~v~~~i~ 260 (300)
T 3zs7_A 233 ACLLAFS-HSHPMDVAIGKSMAVLQELII 260 (300)
T ss_dssp HHHHHHH-TTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999666654
No 60
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*
Probab=99.67 E-value=1.5e-15 Score=137.46 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=112.2
Q ss_pred HHHHhhcCEEEEccCCC-H---HHHHHHHHHHHhCCCcEEEcCCCCCCCC-----hhhhhc--cCceeccCHHHHhhccC
Q 017101 195 LEVVKKAGIVLLQREIP-D---SVNIQVAKAARSAGVPVIFDAGGMDAPI-----PQELLN--FIDILSPNESELGRLTG 263 (377)
Q Consensus 195 ~~~l~~~~~~~~~~~~~-~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~-----~~~ll~--~~dvl~~N~~E~~~l~g 263 (377)
.+.+..++++++....+ . +.+.++++.+++.++|+++|+....... ..++++ ++|+++||..|+..|+|
T Consensus 53 ~~~~~~a~~lvi~~G~~~~~~~~~~~~~~~~a~~~~~pvVlDp~g~~~~~~~~~~~~~ll~~~~~~vitPN~~E~~~L~g 132 (272)
T 1ekq_A 53 ADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVG 132 (272)
T ss_dssp HHHHHHSSEEEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEECTTBTTBHHHHHHHHHHHHHSCCSEEEECHHHHHHHCC
T ss_pred HHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCcCcccchHHHHHHHHccCCCeEECCCHHHHHHHhC
Confidence 45677899988844333 2 4456677788889999999997542111 135676 89999999999999998
Q ss_pred CC-C--------CCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHH
Q 017101 264 MP-T--------DSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGF 334 (377)
Q Consensus 264 ~~-~--------~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l 334 (377)
.+ . .+.++..++++.+.+.+...|++| |..+. ++ .+++.++++.. ...+.|++|+||+|.|.+.+.+
T Consensus 133 ~~~~~~~gvd~~~~~~~~~~aa~~l~~~~~~vVv~~-G~~~~-i~-~~~~~~~~~~~-~~~~~~ttGaGD~lag~iaa~l 208 (272)
T 1ekq_A 133 VTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAIT-GEVDV-IA-DTSHVYTLHNG-HKLLTKVTGAGCLLTSVVGAFC 208 (272)
T ss_dssp ---------------HHHHHHHHHHHHHHTSEEEEC-SSSEE-EE-CSSCEEEECCC-CGGGGGSTTHHHHHHHHHHHHH
T ss_pred CCcccccCccCCCCHHHHHHHHHHHHHHcCCEEEEE-CCCCE-EE-eCCEEEEEcCC-CccccCccCchHHHHHHHHHHH
Confidence 75 3 344667788888877644455555 98873 33 45456666654 4566799999999988888888
Q ss_pred hCCCCHHHHHHHHHH----HHHHHhc
Q 017101 335 VEGKSREECLRFAAA----AASLCVQ 356 (377)
Q Consensus 335 ~~g~~l~~al~~a~~----aAa~~~~ 356 (377)
.+|.++.+|+++|++ ++.....
T Consensus 209 a~g~~~~~A~~~A~~~~~~A~~~a~~ 234 (272)
T 1ekq_A 209 AVEENPLFAAIAAISSYGVAAQLAAQ 234 (272)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999986 5555544
No 61
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=99.55 E-value=6.4e-14 Score=138.92 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=110.3
Q ss_pred hcCEEEEccCCCHHHHHHHHHH---HHhCCCcEEEcCCCCCC--------C----ChhhhhccCceeccCHHHHhhccCC
Q 017101 200 KAGIVLLQREIPDSVNIQVAKA---ARSAGVPVIFDAGGMDA--------P----IPQELLNFIDILSPNESELGRLTGM 264 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~---a~~~g~~v~~D~~~~~~--------~----~~~~ll~~~dvl~~N~~E~~~l~g~ 264 (377)
..+.+.+..- ..+....+.+. .++.+.++++||.-... . +.+.+++.+|+++||..|++.|+|.
T Consensus 91 ~~daIkiG~l-s~~~i~~v~~~l~~~~~~~~~vVlDPvm~a~~g~~l~~~~~~~~l~~~Ll~~a~iitPN~~Ea~~L~g~ 169 (550)
T 3rm5_A 91 KCNVIKTGML-TAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLAGKDIVSLITEKVAPFADILTPNIPECYKLLGE 169 (550)
T ss_dssp CCSEEEECSC-CHHHHHHHHHHHHHHGGGSCEEEECCCC---------CTTHHHHHHHHTGGGCSEECCBHHHHHHHHSC
T ss_pred CCCEEEECCC-CHHHHHHHHHHHHHhcccCCCEEEecceecCCCCcCCCHHHHHHHHHHhhCcceEEecCHHHHHHHhCC
Confidence 5677776444 55544444444 44458899999963210 1 1236789999999999999999997
Q ss_pred C--CCCHHHHHHHHHHHHhcCC-CEEEEeeCCCC--------e--EEEE-eCCeeEEeccCCCCcccCccCchHHHHHHH
Q 017101 265 P--TDSYEQISEAVVKCHKMGV-QQVLVKLGAKG--------S--ALFV-EGEKPIKQSIIPAARVIDTTGAGDTFTASF 330 (377)
Q Consensus 265 ~--~~~~~~~~~~~~~l~~~g~-~~vvvT~G~~G--------~--~~~~-~~~~~~~~~~~~~~~vvdttGAGDaF~ag~ 330 (377)
+ ..+.+++.++++.+.+.+. +.|+||.|..+ + +++. .+++.++++.+ ..+++||+|+||+|.|++
T Consensus 170 ~~~i~~~~d~~~aa~~L~~~g~~~~VvvkgG~~~~~g~~~~~~~d~l~~~~~~~~~~~~~~-~v~~~~t~GtGD~fsaai 248 (550)
T 3rm5_A 170 ERKVNGLQDIFQIAKDLAKITKCSNILVKGGHIPWNDEKEKYITDVLFLGAEQKFIIFKGN-FVNTTHTHGTGCTLASAI 248 (550)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHCCSCEEEEECC-------CCEEEEEEEETTTTEEEEEEEE-CCCCSCCBTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcccCCCCeEEEEEEEcCCCeEEEEEec-CcCCCCCcChhHHHHHHH
Confidence 4 4556788899999998876 89999998763 3 3443 45556666654 566789999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHH
Q 017101 331 AVGFVEGKSREECLRFAAAAA 351 (377)
Q Consensus 331 l~~l~~g~~l~~al~~a~~aA 351 (377)
++.|++|.++++|+++|+..-
T Consensus 249 aa~La~G~~l~eAv~~A~~~v 269 (550)
T 3rm5_A 249 ASNLARGYSLPQSVYGGIEYV 269 (550)
T ss_dssp HHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999643
No 62
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=99.33 E-value=1.5e-11 Score=110.54 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=109.3
Q ss_pred hhHHHHhhcCEEEEccCCCH-H---HHHHHHHHHHhCCCcEEEcCCCCCCC-----Chhhhhc-cCceeccCHHHHhhcc
Q 017101 193 EDLEVVKKAGIVLLQREIPD-S---VNIQVAKAARSAGVPVIFDAGGMDAP-----IPQELLN-FIDILSPNESELGRLT 262 (377)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~-~---~~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~ll~-~~dvl~~N~~E~~~l~ 262 (377)
+..+.+..++.+++...+.. + .+..+.+.+++.++|+++||...... ....+++ .+++++||..|+..|+
T Consensus 49 e~~~~~~~~dalvi~~G~~~~~~~~~~~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~vITPN~~E~~~L~ 128 (265)
T 1v8a_A 49 ELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEILSRGVDVLKGNFGEISALL 128 (265)
T ss_dssp THHHHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTBHHHHHHHHHHHHHCCSEEEEEHHHHHHHH
T ss_pred HHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHcCCcEEEcCccccccccCHHHHHHHHHhCCcEEcCCHHHHHHHh
Confidence 44567889999999765543 2 34556777888899999999753211 1123443 3899999999999998
Q ss_pred CCCC--------C-CHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHH
Q 017101 263 GMPT--------D-SYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVG 333 (377)
Q Consensus 263 g~~~--------~-~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~ 333 (377)
|.+. . ..++..++++.+.+.+...|++| |..+. +..+++.+..+.. .....+++|+||+|.|.+.+.
T Consensus 129 g~~~~~~gvd~~~~~~~~~~~aa~~la~~~~~~Vvlk-G~~d~--i~~~~~~~~~~~g-~~~~~~~~GtGD~Lsg~iaa~ 204 (265)
T 1v8a_A 129 GEEGKTRGVDSLEYGEEEAKKLTMNAAREFNTTVAVT-GAVDY--VSDGRRTFAVYNG-HELLGRVTGTGCMVAALTGAF 204 (265)
T ss_dssp HHHC----------CHHHHHHHHHHHHHHTTSEEEEE-SSSEE--EECSSCEEEECCC-CGGGGGSTTHHHHHHHHHHHH
T ss_pred CCcccccCcCcccccHHHHHHHHHHHHHHhCcEEEEc-CCCcE--EEcCCEEEEEcCC-CcCcCCccChhHHHHHHHHHH
Confidence 7542 1 22567788888887765567777 87765 3345556666543 344569999999999999999
Q ss_pred HhCCCCHHHHHHHHHHH
Q 017101 334 FVEGKSREECLRFAAAA 350 (377)
Q Consensus 334 l~~g~~l~~al~~a~~a 350 (377)
+.+|.+ .+|+..|...
T Consensus 205 lA~g~~-~~Aa~~a~~~ 220 (265)
T 1v8a_A 205 VAVTEP-LKATTSALVT 220 (265)
T ss_dssp HTTSCH-HHHHHHHHHH
T ss_pred HhcCCC-HHHHHHHHHH
Confidence 999999 8888777654
No 63
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=99.16 E-value=1.1e-10 Score=107.07 Aligned_cols=168 Identities=20% Similarity=0.241 Sum_probs=105.6
Q ss_pred HHHhhcCEEEEccCCC--HHHHHHHHHHHHh--CCCcEEEcCCCCCCCChh---hh-h-ccCceeccCHHHHhhccCCCC
Q 017101 196 EVVKKAGIVLLQREIP--DSVNIQVAKAARS--AGVPVIFDAGGMDAPIPQ---EL-L-NFIDILSPNESELGRLTGMPT 266 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~--~~~~~~~~~~a~~--~g~~v~~D~~~~~~~~~~---~l-l-~~~dvl~~N~~E~~~l~g~~~ 266 (377)
+.+...+.+.+...+. .+....+.+..+. .++|+++|+.+.. ... .+ + +..++++||..|++.|+|.+.
T Consensus 121 ~~~~~~dav~IG~Gl~~~~~~~~~v~~~l~~~~~~~pvVlDa~g~~--ll~~~~~l~L~~~~~viTPN~~E~~~L~g~~~ 198 (311)
T 3bgk_A 121 EQITAADVVLMGPGLAEDDLAQTTFDVVWQAIEPKQTLIIDGSAIN--LLAKRKPAIWPTKQIILTPHQKEWERLSGLTI 198 (311)
T ss_dssp HHHHHCSEEEECTTCCSSHHHHHHHHHHHHHCCTTSEEEEETHHHH--HHHHCC-CCCSCSCEEEECCSCC-CTTTCCCS
T ss_pred HHhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCCCeEEEeCChhh--hhccChhhcCCCCCEEECCcHHHHHHHhCCCC
Confidence 4556788988875343 2222222223333 3789999996321 000 11 2 468899999999999999775
Q ss_pred CCH-HHH-HHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHH-hC-CCCHHH
Q 017101 267 DSY-EQI-SEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGF-VE-GKSREE 342 (377)
Q Consensus 267 ~~~-~~~-~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l-~~-g~~l~~ 342 (377)
.+. ++. .++++.+.+ + .+|+..| .+.+++. ++..+ +... ..+..+++|+||+| +|+++++ .+ |.++.+
T Consensus 199 ~~~~~d~~~~aa~~l~~-g--~~VvlkG-~~~~i~~-~~~~~-~~~~-~~~~~~t~GtGD~L-ag~iaa~lA~~g~~~~e 270 (311)
T 3bgk_A 199 PEQIEAATQTALAHFPK-E--TILVAKS-HQTKIYQ-GQKIG-HIQV-GGPYQATGGMGDTL-AGMIAGFVAQFHTDRFE 270 (311)
T ss_dssp TTCCHHHHHHHHTTSCT-T--CEEEECS-SSCEEEE-TTEEE-EECC-CCGGGCSTTHHHHH-HHHHHHHHHHCCSCHHH
T ss_pred CcchhhHHHHHHHHHhc-C--CEEEEeC-CCeEEEE-CCEEE-EECC-CCCCCCCCcHHHHH-HHHHHHHHHccCCCHHH
Confidence 543 455 667777766 4 3455445 5565554 55443 3333 56778999999997 6666665 68 999999
Q ss_pred HHHHHHHHHHHHhcc---cCCCCCCCCHHHHHHHHhh
Q 017101 343 CLRFAAAAASLCVQV---KGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 343 al~~a~~aAa~~~~~---~G~~~~~p~~e~i~~~l~~ 376 (377)
|+++|+++.+..... .| ++ ....+|.+.|.+
T Consensus 271 A~~~A~~~~~~ag~~a~~~g--~~-~~a~dl~~~l~~ 304 (311)
T 3bgk_A 271 VAAAAVFLHSYIADQLSKEA--YV-VLPTRISAEITR 304 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--SS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhC--CC-CCHHHHHHHHHH
Confidence 999998776663331 24 23 467777766543
No 64
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A
Probab=99.12 E-value=8.3e-10 Score=99.44 Aligned_cols=172 Identities=18% Similarity=0.179 Sum_probs=111.4
Q ss_pred HhhcCEEEEccCCCH-HHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCCCCCCH-HHHHHH
Q 017101 198 VKKAGIVLLQREIPD-SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSY-EQISEA 275 (377)
Q Consensus 198 l~~~~~~~~~~~~~~-~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~-~~~~~~ 275 (377)
+.+++++++...+.. +...++++.+.+.+.|+++|.......... .....++++||..|++.|+|.+..+. ++..++
T Consensus 96 l~~~davviGPGlg~~~~~~~~~~~~l~~~~p~VlDAdal~~~~l~-~~~~~~vlTPN~~E~~~L~g~~~~~~~~d~~~a 174 (279)
T 3rpz_A 96 EETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYP-KREGPVILTPHPGEFFRMTGVPVNELQKKRAEY 174 (279)
T ss_dssp SSCCSEEEECTTCCCCHHHHHHHHHHTTSSSCEEECGGGCCSCCCC-CCSSCEEECCCHHHHHHHHCCCHHHHTTSHHHH
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHHHhhCCCEEEECCccchhhhh-hccCCEEEecCHHHHHHHhCCCccchHHHHHHH
Confidence 367889988765543 345567777777888999999765321111 12457899999999999999764332 356667
Q ss_pred HHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHHH----HH
Q 017101 276 VVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAAA----AA 351 (377)
Q Consensus 276 ~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~~----aA 351 (377)
++.+.+..-. +|+-.|.. .+++..++..+ +... ......|+|+||++.+.+...+.+|.++.+|+..|.. ++
T Consensus 175 a~~la~~~~~-~VvlKG~~-~vi~~~~g~~~-~~~~-g~~~~at~GtGD~Lag~iaa~lA~g~~~~~A~~~a~~lh~~Ag 250 (279)
T 3rpz_A 175 AKEWAAQLQT-VIVLKGNQ-TVIAFPDGDCW-LNPT-GNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACA 250 (279)
T ss_dssp HHHHHHHHTS-EEEECSTT-CEEECTTSCEE-ECCC-CCGGGCSTTHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCe-EEEEeCCC-cEEECCCceEE-EeCC-CCCCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 7777654322 44444543 33444444443 3332 3456789999998765555556799999999999875 44
Q ss_pred HHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 352 SLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 352 a~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
-....+.|... ....||.+.+.+
T Consensus 251 ~~a~~~~g~~~--~~a~dl~~~lp~ 273 (279)
T 3rpz_A 251 ELWTDEHSAHT--LLAHELSDILPR 273 (279)
T ss_dssp HHHHHHSCTTS--CCHHHHHHHHHH
T ss_pred HHHHHhcCCCC--cCHHHHHHHHHH
Confidence 44555556442 366777776643
No 65
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=99.08 E-value=6.6e-10 Score=101.85 Aligned_cols=165 Identities=19% Similarity=0.200 Sum_probs=102.1
Q ss_pred HHHhhcCEEEEccCCC--HHHHHHHHHHHHh--CCCcEEEcCCCCC-----CCChhhhhccCceeccCHHHHhhccCCCC
Q 017101 196 EVVKKAGIVLLQREIP--DSVNIQVAKAARS--AGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMPT 266 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~--~~~~~~~~~~a~~--~g~~v~~D~~~~~-----~~~~~~ll~~~dvl~~N~~E~~~l~g~~~ 266 (377)
..+...+.+.+...+. .+....+.+..+. .++|+++|+.+.. ...+.. +..++++||..|++.|+|.+.
T Consensus 107 ~~~~~~dav~IG~Gl~~~~~~~~~v~~~l~~~~~~~pvVlDa~g~~ll~~~~~~l~~--~~~~viTPN~~E~~~L~g~~~ 184 (310)
T 2r3b_A 107 NVVEQADVILIGPGLGLDATAQQILKMVLAQHQKQQWLIIDGSAITLFSQGNFSLTY--PEKVVFTPHQMEWQRLSHLPI 184 (310)
T ss_dssp HHHHHCSEEEECTTCCSSHHHHHHHHHHHHHCCTTCEEEEETHHHHHHHHTTCCCSS--GGGEEEECCHHHHHHHHCCCG
T ss_pred HHhccCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCCcEEEcCCcchhcccchhhhcC--CCCEEEcCCHHHHHHHhCCCC
Confidence 4556788988875343 2222222233333 4789999995320 011111 467899999999999999765
Q ss_pred CCHH-HH-HHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHH-hCCCCHHHH
Q 017101 267 DSYE-QI-SEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGF-VEGKSREEC 343 (377)
Q Consensus 267 ~~~~-~~-~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l-~~g~~l~~a 343 (377)
.+.+ +. .++++.+ ++ +|+..| .+.+++. ++..+ +... .....+|+|+||+| +|+++++ .+|.++.+|
T Consensus 185 ~~~~~~~a~~aA~~l---g~--~VvlKG-~~~vi~~-~~~~~-~~~~-g~~~~~t~GtGD~L-ag~Iaa~lA~g~~~~eA 254 (310)
T 2r3b_A 185 EQQTLANNQRQQAKL---GS--TIVLKS-HRTTIFH-AGEPF-QNTG-GNPGMATGGTGDTL-AGIIAGFLAQFKPTIET 254 (310)
T ss_dssp GGCCHHHHHHHHHHH---TS--EEEECS-TTCEEEC-SSSCE-ECCC-CCGGGCSTTHHHHH-HHHHHHHHHHSCSSHHH
T ss_pred CcccchHHHHHHHHh---Cc--EEEEeC-CceEEEE-CCEEE-EECC-CCCCCCCCChHHHH-HHHHHHHHHcCCCHHHH
Confidence 4332 44 5666666 43 455555 4555554 44343 3333 45678999999997 5555554 699999999
Q ss_pred HHHHHHHHHHHhc---ccCCCCCCCCHHHHHHHHh
Q 017101 344 LRFAAAAASLCVQ---VKGAIPSMPDRKSVLNLLQ 375 (377)
Q Consensus 344 l~~a~~aAa~~~~---~~G~~~~~p~~e~i~~~l~ 375 (377)
+..|+++.+.... ..| ++ ....++.+.|.
T Consensus 255 ~~~A~~~~~~ag~~a~~~g--~~-~~a~dl~~~l~ 286 (310)
T 2r3b_A 255 IAGAVYLHSLIGDDLAKTD--YV-VLPTKISQALP 286 (310)
T ss_dssp HHHHHHHHHHHHHHHTTTC--SS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC--CC-CCHHHHHHHHH
Confidence 9999877666333 124 23 36677766554
No 66
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=99.00 E-value=4e-09 Score=102.71 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=112.2
Q ss_pred HHHHhhcCEEEEccCCCH-HHHHHHHH-HHHhCCCcEEEcCCCCCCCChhhhh---ccCceeccCHHHHhhccCCCCCCH
Q 017101 195 LEVVKKAGIVLLQREIPD-SVNIQVAK-AARSAGVPVIFDAGGMDAPIPQELL---NFIDILSPNESELGRLTGMPTDSY 269 (377)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~-~~~~~~~~-~a~~~g~~v~~D~~~~~~~~~~~ll---~~~dvl~~N~~E~~~l~g~~~~~~ 269 (377)
.+.+..++.+++...+.. +...++++ .+++.++|+++|+....... .+++ +..++++||..|+..|+|.+..+.
T Consensus 315 ~~~~~~~davviGpGlg~~~~~~~~~~~~l~~~~~pvVlDadgl~~l~-~~ll~~~~~~~vlTPN~~E~~~L~g~~~~~~ 393 (502)
T 3rss_A 315 LELSKDVDVVAIGPGLGNNEHVREFVNEFLKTLEKPAVIDADAINVLD-TSVLKERKSPAVLTPHPGEMARLVKKTVGDV 393 (502)
T ss_dssp HHHHTTCSEEEECTTCCCSHHHHHHHHHHHHHCCSCEEECHHHHHTCC-HHHHHHCSSCEEECCCHHHHHHHHTCCHHHH
T ss_pred HHHhccCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEeCcccchhc-HHHHhccCCCEEEeCCHHHHHHHhCCCccch
Confidence 356788999999765543 23334333 55677999999996431111 3344 357899999999999999764321
Q ss_pred -HHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017101 270 -EQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAA 348 (377)
Q Consensus 270 -~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~ 348 (377)
++ .++++.+.+.+ ..+|+..|.. .+++ ..+..+..+ . .....+|+|+||+|.|.+.+.+.+|.++.+|+.+|+
T Consensus 394 ~~d-~~aa~~la~~~-~~~VvlKG~~-~vi~-~~~~~~~~~-~-g~~~~at~GsGD~Lag~iaa~lA~g~~~~~Aa~~A~ 467 (502)
T 3rss_A 394 KYN-YELAEEFAKEN-DCVLVLKSAT-TIVT-DGEKTLFNI-T-GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSV 467 (502)
T ss_dssp TTC-HHHHHHHHHHH-TSEEEECSSS-EEEE-CSSCEEEEC-C-CCGGGSSTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHc-CCEEEEeCCC-eEEE-cCCEEEEEC-C-CCCccccCCchHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 23 56677776543 2355566654 3344 333444333 2 456689999999988887777889999999999998
Q ss_pred HHHHHHhccc--CCCCCCCCHHHHHHHHhh
Q 017101 349 AAASLCVQVK--GAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 349 ~aAa~~~~~~--G~~~~~p~~e~i~~~l~~ 376 (377)
..-+.+-... |.. + .+..||.+.+.+
T Consensus 468 ~~hg~Ag~~aa~g~~-~-~~a~dl~~~lp~ 495 (502)
T 3rss_A 468 YLHGFAAELFEQDER-G-LTASELLRLIPE 495 (502)
T ss_dssp HHHHHHHHTCSSCGG-G-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-C-cCHHHHHHHHHH
Confidence 7766653321 433 2 366777766543
No 67
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=98.96 E-value=4.2e-08 Score=87.78 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=106.9
Q ss_pred chhHHHHhhcCEEEEccCC-CHH---HHHHHHHHHHhCCCcEEEcCCCCCCCC-----hhhhh-ccCceeccCHHHHhhc
Q 017101 192 DEDLEVVKKAGIVLLQREI-PDS---VNIQVAKAARSAGVPVIFDAGGMDAPI-----PQELL-NFIDILSPNESELGRL 261 (377)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~-~~~---~~~~~~~~a~~~g~~v~~D~~~~~~~~-----~~~ll-~~~dvl~~N~~E~~~l 261 (377)
++..+....++.+++.... ..+ ....+++.+++.++|+++||....... ...++ ...++++||..|+..|
T Consensus 50 ~e~~e~~~~a~alvIn~G~l~~~~~~~~~~a~~~a~~~~~PvVlDPVg~gas~~r~~~~~~Ll~~~~~VItpN~~E~~~L 129 (273)
T 3dzv_A 50 REFPQMFQQTSALVLNLGHLSQEREQSLLAASDYARQVNKLTVVDLVGYGASDIRNEVGEKLVHNQPTVVKGNLSEMRTF 129 (273)
T ss_dssp GGHHHHHTTCSEEEEECCSCCHHHHHHHHHHHHHHHHTTCCEEEECTTTTSCHHHHHHHHHHHHTCCSEEEEEHHHHHHH
T ss_pred HHHHHHHHHCCeEEEecCCCChHHHHHHHHHHHHHHHcCCcEEEchhhcCCcccCHHHHHHHHhcCCcEECCCHHHHHHH
Confidence 3455678889999886433 332 345566778889999999997543211 11222 3689999999999999
Q ss_pred cCCCCC----C-------HH---HHHHHHHHHHhcCC-CEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHH
Q 017101 262 TGMPTD----S-------YE---QISEAVVKCHKMGV-QQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTF 326 (377)
Q Consensus 262 ~g~~~~----~-------~~---~~~~~~~~l~~~g~-~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF 326 (377)
+|.... + .+ +..++++.+.+... ..|++|-+.. ++.++++.+.++.- ....-+++|.||++
T Consensus 130 ~g~~~~~~GVds~~~~~~~~~~~d~~~aa~~la~~~~~~~VvlkG~~D---~i~dg~~~~~~~~G-~~~~~~v~GtGc~L 205 (273)
T 3dzv_A 130 CQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFPQTVFLATGIQD---VLVSQEQVIVLQNG-VPELDCFTGTGDLV 205 (273)
T ss_dssp TTCCCC-------CGGGSHHHHHHHHHHHHHHHHHSTTCEEEEESSSE---EEECSSCEEEECCC-CGGGGSSTTHHHHH
T ss_pred hCCcccccccccccccchhhhhHHHHHHHHHHHHHhCCeEEEEECCee---EEEcCCEEEEeCCC-CcccCCcCCchHHH
Confidence 986532 1 12 56677888877655 6777775432 34455555555442 23345679999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 017101 327 TASFAVGFVEGKSREECLRFAAAA 350 (377)
Q Consensus 327 ~ag~l~~l~~g~~l~~al~~a~~a 350 (377)
.|.+.+.+.+|.++.+|+..|...
T Consensus 206 s~~Iaa~lA~g~~~~~Aa~~A~~~ 229 (273)
T 3dzv_A 206 GALVAALLGEGNAPMTAAVAAVSY 229 (273)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999998877654
No 68
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A
Probab=98.68 E-value=7.8e-07 Score=84.86 Aligned_cols=181 Identities=11% Similarity=0.052 Sum_probs=104.1
Q ss_pred eecCCChHHHHHHHHHHcCC-CceEEEEecCCccHHHHHHHHHh------------------------CCCCcccEEecc
Q 017101 100 QTLAGGKGANQAACGAKLSH-PTYFVGQVGEDANGKLITDALSG------------------------CGVRLDYMNVVK 154 (377)
Q Consensus 100 ~~~~GG~~~NvA~~la~LG~-~v~li~~vG~D~~G~~i~~~l~~------------------------~gVd~~~v~~~~ 154 (377)
..+.||.+.-.|..|+++|. +|.+.+..+. +...+.|.. ...+.++|..-
T Consensus 113 ~~~~GGnA~imAn~La~lg~~~Vi~~~p~~s----k~~~~ll~~~i~~p~~e~g~l~l~~~~ea~~~~~~~~iH~I~Ey- 187 (474)
T 3drw_A 113 EERLGGQAGIIANTLAGLKIRKVIAYTPFLP----KRLAELFKKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEF- 187 (474)
T ss_dssp EEEEESHHHHHHHHHHHTTCSEEEECCSCCC----HHHHTTSCTTEEEEEESSSSEEEEEGGGCCCTTCCCCEEEEEEE-
T ss_pred eEecCChHHHHHHHHHHcCCCcEEEecCcCC----HHHHHhcCCcceeecccCCceeecCchhhhccCCCCCcEEEEEc-
Confidence 46899999999999999998 4777776554 444455522 11122222211
Q ss_pred CCCCCCceEEE-----EEecCCCeeEEEECCCCC-C-CCCcCcCchhHHHHhhcCEEEEccCC--C---------HHH--
Q 017101 155 DGGVPTGHAVV-----MLQSDGQNSIIIVGGTNM-S-CWPEKFGDEDLEVVKKAGIVLLQREI--P---------DSV-- 214 (377)
Q Consensus 155 ~~~~~T~~~~~-----~~~~~g~~~~~~~~~~~~-~-~~~~~l~~~~~~~l~~~~~~~~~~~~--~---------~~~-- 214 (377)
+.|..+. +..+..+|-++..+..+. . ...+.+.+...+..+..|.++++|.. . .+.
T Consensus 188 ----~~G~~~~~~~~~~~aPraNRfI~s~D~~N~~~l~~~e~f~~~l~e~~~~~d~~vLSGlq~m~~~y~dg~~~~~~l~ 263 (474)
T 3drw_A 188 ----RKGLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYYLR 263 (474)
T ss_dssp ----CTTCEEESSSCEEECCSCEEEEEEECCSGGGCCSCCTTTGGGHHHHHHHCSEEEECCGGGCCSBCTTSCBHHHHHH
T ss_pred ----CCCCeeecCCceEEccCCCeEEEEcCCCCHHhccccHHHHHHHHHhhcCCCEEEEeccccccccccccccHHHHHH
Confidence 1222222 122223344444443332 2 11234432222333479999998721 1 122
Q ss_pred -HHHHHHHHHhCCCcEEEcCCCCCCC-----ChhhhhccCceeccCHHHHhhccCC-----------CCCCHHHHHHHHH
Q 017101 215 -NIQVAKAARSAGVPVIFDAGGMDAP-----IPQELLNFIDILSPNESELGRLTGM-----------PTDSYEQISEAVV 277 (377)
Q Consensus 215 -~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~ll~~~dvl~~N~~E~~~l~g~-----------~~~~~~~~~~~~~ 277 (377)
..+.++..+..++++-+...+.... ....+++++|.+-+||+|+..+.+. ...+.+++.++++
T Consensus 264 ~~~e~i~~l~~~~~~iH~E~As~~~~~l~~~i~~~i~p~vDSlGmNEqELa~l~~~lg~~~~s~~~~~~~~i~~v~e~~~ 343 (474)
T 3drw_A 264 RAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSVLGYRELADRIFTYNRLEDSILGGM 343 (474)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCSCHHHHHHHHHHTGGGSSEEEEEHHHHHHHHHHHTCHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEeCccccHHHHHHHHHHhcccccccccCHHHHHHHHHHhcCCccchhhhcCCCHHHHHHHHH
Confidence 2344555568899999999876432 3457889999999999999877653 1123456777777
Q ss_pred HHHhc-CCCEEEE
Q 017101 278 KCHKM-GVQQVLV 289 (377)
Q Consensus 278 ~l~~~-g~~~vvv 289 (377)
.+++. +++.|.|
T Consensus 344 ~ll~~~~l~rIhv 356 (474)
T 3drw_A 344 IILDELNFEILQV 356 (474)
T ss_dssp HHHHHHCCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 76643 7765544
No 69
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=98.40 E-value=1.4e-05 Score=78.46 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=101.6
Q ss_pred hhHHHHhh-cCEEEEccCCC--HHHHHHHHHHHHhCCCcEEEcCCCCCCC-----Chhhhhc--cCceeccCHHHHhhcc
Q 017101 193 EDLEVVKK-AGIVLLQREIP--DSVNIQVAKAARSAGVPVIFDAGGMDAP-----IPQELLN--FIDILSPNESELGRLT 262 (377)
Q Consensus 193 ~~~~~l~~-~~~~~~~~~~~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~ll~--~~dvl~~N~~E~~~l~ 262 (377)
+..+..+. ++.+++..... .+....+.+.+++.++|+++||...... ....+++ ..++++||..|+..|+
T Consensus 298 E~~e~~~~~~~alvin~G~l~~~~~~~~a~~~a~~~~~PvVlDPVg~~a~~~r~~~~~~Ll~~~~~~vItpN~~E~~~L~ 377 (540)
T 3nl6_A 298 EVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLA 377 (540)
T ss_dssp HHHHHTTSTTCEEEEESSCSCCHHHHHHHHHHHHTTTCCEEEECTTCTTSHHHHHHHHHHTTSCCCSEEEECHHHHHHHT
T ss_pred HHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHHcCCCEEEChHHhhcccccHHHHHHHHhhCCCeEECCCHHHHHHHh
Confidence 44456676 89888864332 4566677788889999999999764321 1235665 7899999999999999
Q ss_pred CCCC------C-----CHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeC-------------------CeeEEeccCC
Q 017101 263 GMPT------D-----SYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEG-------------------EKPIKQSIIP 312 (377)
Q Consensus 263 g~~~------~-----~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~-------------------~~~~~~~~~~ 312 (377)
|... + +.++..++++.+.+..-..|++| |+.-. +.++ +..+.++.-
T Consensus 378 g~~~~~~~GVds~~~~~~~d~~~aA~~lA~~~~~vVvlk-G~~D~--I~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~G- 453 (540)
T 3nl6_A 378 ELNKERMKGVDASSGISNELLIQATKIVAFKYKTVAVCT-GEFDF--IADGTIEGKYSLSKGTNGTSVEDIPCVAVEAG- 453 (540)
T ss_dssp TC--------------CCHHHHHHHHHHHHHTTSEEEEC-SSSEE--EEECCGGGBCCSSSCCSSCCTTSSCEEEEECS-
T ss_pred CCCcccccccccccccCHHHHHHHHHHHHHHhCCEEEEc-CCCeE--EECCCccccccccccccccccCCccEEEECCC-
Confidence 8652 1 12566777888877655556655 44332 3333 344444432
Q ss_pred C-CcccCccCchHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Q 017101 313 A-ARVIDTTGAGDTFTASFAVGFVEGK---SREECLRFAAAA 350 (377)
Q Consensus 313 ~-~~vvdttGAGDaF~ag~l~~l~~g~---~l~~al~~a~~a 350 (377)
. .-.-.++|.||++.+.+.+.+..+. ++.+|+..|...
T Consensus 454 ~~~~m~~vtGtGc~Lsg~Iaa~la~~~~~~~~~~Aa~~a~~~ 495 (540)
T 3nl6_A 454 PIEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVML 495 (540)
T ss_dssp CCGGGGSSTTHHHHHHHHHHHHHHTCCTTCBHHHHHHHHHHH
T ss_pred ChhhccCccCchHHHHHHHHHHHhcCcCCCCHHHHHHHHHHH
Confidence 2 1223469999999998888888887 577877666543
No 70
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=98.35 E-value=8.5e-06 Score=72.28 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=93.0
Q ss_pred hhHHHHhhcCEEEEcc-CCCHH---HHHHHHHHHHhCCCcEEEcCCCCCCC-----Chhhh-hccCceeccCHHHHhhcc
Q 017101 193 EDLEVVKKAGIVLLQR-EIPDS---VNIQVAKAARSAGVPVIFDAGGMDAP-----IPQEL-LNFIDILSPNESELGRLT 262 (377)
Q Consensus 193 ~~~~~l~~~~~~~~~~-~~~~~---~~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~l-l~~~dvl~~N~~E~~~l~ 262 (377)
+..+....++.+++.- .+.++ ....+.+.|.+.++|+++||.+.... ...++ -.+.+++++|..|+..|.
T Consensus 49 E~~e~~~~a~al~iNiGtl~~~~~~~m~~A~~~A~~~~~PvVLDPVg~gas~~R~~~~~~ll~~~~~vIrgN~sEi~~L~ 128 (265)
T 3hpd_A 49 ELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEILSRGVDVLKGNFGEISALL 128 (265)
T ss_dssp THHHHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTBHHHHHHHHHHHHHCCSEEEEEHHHHHHHH
T ss_pred HHHHHHHHCCeEEEECCCCChHHHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHHHHhcCCcEEcCCHHHHHHHh
Confidence 4556777888888864 33333 34455677889999999999754211 11222 346899999999999998
Q ss_pred CCCC---------CCHHHHHHHHHHHHhcCCCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccC-ccCchHHHHHHHHH
Q 017101 263 GMPT---------DSYEQISEAVVKCHKMGVQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVID-TTGAGDTFTASFAV 332 (377)
Q Consensus 263 g~~~---------~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvd-ttGAGDaF~ag~l~ 332 (377)
|... ...++..++++.+.+..-..|++| |+.-. +.++++.+.++.- ....- .+|.||.+.+...+
T Consensus 129 g~~~~~~gvds~~~~~~d~~~~a~~lA~~~~~vVvlk-G~~d~--I~dg~~~~~~~~G--~~~m~~vtGtGc~Lsg~iaa 203 (265)
T 3hpd_A 129 GEEGKTRGVDSLEYGEEEAKKLTMNAAREFNTTVAVT-GAVDY--VSDGRRTFAVYNG--HELLGRVTGTGCMVAALTGA 203 (265)
T ss_dssp HHHC----------CHHHHHHHHHHHHHHTTSEEEEE-SSSEE--EECSSCEEEECCC--CGGGGGSTTHHHHHHHHHHH
T ss_pred cccCCCCCccCccccHHHHHHHHHHHHHHhCCEEEEe-CCCeE--EEcCCEEEEECCC--ChHhhcCCccchHHHHHHHH
Confidence 6421 234566777777776544455555 55433 4455555554432 22233 48999997665555
Q ss_pred HHhCCCCHHHHHHHHH
Q 017101 333 GFVEGKSREECLRFAA 348 (377)
Q Consensus 333 ~l~~g~~l~~al~~a~ 348 (377)
.+..+ +..+|...|.
T Consensus 204 ~lA~~-~~~~Aa~~a~ 218 (265)
T 3hpd_A 204 FVAVT-EPLKATTSAL 218 (265)
T ss_dssp HHTTS-CHHHHHHHHH
T ss_pred HHhcC-ChHHHHHHHH
Confidence 55666 5556555554
No 71
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=98.15 E-value=1.3e-05 Score=77.25 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=100.6
Q ss_pred hhcCEEEEccCC---CHHHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHhhccCC-----CCCC-H
Q 017101 199 KKAGIVLLQREI---PDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGM-----PTDS-Y 269 (377)
Q Consensus 199 ~~~~~~~~~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~~l~g~-----~~~~-~ 269 (377)
.+++.+++...+ +.+ +.+++ +. . |+++|............++...+++||..|+..|+|. +..+ .
T Consensus 291 ~~~~a~~iGPGlG~~~~~-l~~~l---~~-~-p~VlDADaL~~~~~~~~~~~~~VlTPh~~E~~rL~g~~~~~v~~~~~~ 364 (475)
T 3k5w_A 291 NLLSAFALGMGLENIPKD-FNRWL---EL-A-PCVLDAGVFYHKEILQALEKEAVLTPHPKEFLSLLNLVGINISMLELL 364 (475)
T ss_dssp SSCSEEEECTTCSSCCTT-HHHHH---HH-S-CEEEEGGGGGSGGGGTTTTSSEEEECCHHHHHHHHHHTSCCCCTTSGG
T ss_pred cCCCEEEEcCCCCCCHHH-HHHHH---hc-C-CEEEECcccCCchhhhccCCCEEECCCHHHHHHHhCCccCCCCcchhH
Confidence 456777765322 112 33333 23 4 9999986542211122345568999999999999875 4333 2
Q ss_pred HHHHHHHHHHHhcC-CCEEEEeeCCCCeEEEEeCCeeEEeccCCCCcccCccCchHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017101 270 EQISEAVVKCHKMG-VQQVLVKLGAKGSALFVEGEKPIKQSIIPAARVIDTTGAGDTFTASFAVGFVEGKSREECLRFAA 348 (377)
Q Consensus 270 ~~~~~~~~~l~~~g-~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~l~~al~~a~ 348 (377)
++..++++.+.+.. ...|++| |..-. +..+++.+..+. ...-..|.|.||++.+.+...+.+|.++.+|+..|.
T Consensus 365 ~d~~~aa~~la~~~g~~~VvlK-G~~~v--I~~~~~~~~~~~--g~~~mat~GtGdvLsg~Iaa~lA~g~~~~~Aa~~a~ 439 (475)
T 3k5w_A 365 DNKLEIARDFSQKYPKVVLLLK-GANTL--IAHQGQVFINIL--GSVALAKAGSGDVLAGLILSLLSQNYTPLDAAINAS 439 (475)
T ss_dssp GSCC--CHHHHHHCTTEEEEEC-SSSEE--EEETTEEEEECC--CCGGGCSTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEe-CCCCE--EECCCEEEEECC--CCCCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34556677777654 4455555 44322 334555444332 233457899999999999999999999999998887
Q ss_pred HHHHHHhcccCCCCCCCCHHHHHHHHhh
Q 017101 349 AAASLCVQVKGAIPSMPDRKSVLNLLQY 376 (377)
Q Consensus 349 ~aAa~~~~~~G~~~~~p~~e~i~~~l~~ 376 (377)
..-+.+-.......++ +..||.+.+.+
T Consensus 440 ~lhg~ag~~a~~~~~~-~a~dl~~~l~~ 466 (475)
T 3k5w_A 440 LAHALASLEFKNNYAL-TPLDLIEKIKQ 466 (475)
T ss_dssp HHHHHGGGGCSSTTCC-CHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCc-CHHHHHHHhhh
Confidence 6655544432111233 67888877754
No 72
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Probab=98.05 E-value=0.0001 Score=70.48 Aligned_cols=181 Identities=17% Similarity=0.166 Sum_probs=100.8
Q ss_pred ecCCChHHHHHHHHHHcCCCceE--EEEecCCccHHHHHHHHHhCCCCcccEEecc---------CCCCCCceEEEEEec
Q 017101 101 TLAGGKGANQAACGAKLSHPTYF--VGQVGEDANGKLITDALSGCGVRLDYMNVVK---------DGGVPTGHAVVMLQS 169 (377)
Q Consensus 101 ~~~GG~~~NvA~~la~LG~~v~l--i~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~---------~~~~~T~~~~~~~~~ 169 (377)
.+.||.+...|..++.+|.++.+ ++.+| +.+.+.|.+.+|..-.+.-.+ ....+....+++-.+
T Consensus 108 ~~~GGnA~imAn~la~lg~~~vl~~~~~l~-----~~~~~lf~~~~i~~p~~~~~~~~l~~~~e~~~~~~~~iH~I~Ef~ 182 (455)
T 1ua4_A 108 LRMGGQAGIMANLLGGVYGVPVIVHVPQLS-----RLQANLFLDGPIYVPTLENGEVKLIHPKEFSGDEENCIHYIYEFP 182 (455)
T ss_dssp EEEESHHHHHHHHHTTTTCCCEEECCSCCC-----HHHHTTSCSSSEEEEEEETTEEEEECGGGCSCCCCCCEEEEEEEC
T ss_pred cccCCcHHHHHHHHHHcCCCEEEEeCCCCC-----HHHHHhcCCCCeEeecccCCccccccchhhccCCCCCceEEEEcC
Confidence 38999999999999999999887 55554 445666653233220000000 002234455555555
Q ss_pred CCCe----------eEEEECCC-CCCC-CCcCcCchhHHHHhhcCEEEEccC--CCH----HHH----HHHHHHHHhCCC
Q 017101 170 DGQN----------SIIIVGGT-NMSC-WPEKFGDEDLEVVKKAGIVLLQRE--IPD----SVN----IQVAKAARSAGV 227 (377)
Q Consensus 170 ~g~~----------~~~~~~~~-~~~~-~~~~l~~~~~~~l~~~~~~~~~~~--~~~----~~~----~~~~~~a~~~g~ 227 (377)
.|++ .++..... +... ..+.+.+...+....+|.++++|. ++. +.. ..+. ..++.++
T Consensus 183 ~G~~~~~~~aPraNRfI~s~D~~n~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~~~~~~~~~~l~~i~-~L~~~~~ 261 (455)
T 1ua4_A 183 RGFRVFEFEAPRENRFIGSADDYNTTLFIREEFRESFSEVIKNVQLAILSGLQALTKENYKEPFEIVKSNLE-VLNEREI 261 (455)
T ss_dssp TTCEETTEECSSCEEEEEECCSSGGGTCCCGGGSTTHHHHGGGCSEEEECCGGGCCTTTCHHHHHHHHHHHH-HHHHTTC
T ss_pred CCCeecceeccccceeEEecCCCcccCcccHHHHHHHHhhccCCcEEEEechhcccccchHHHHHHHHHHHH-HhcCCCc
Confidence 5542 22222211 1111 112232222233345999999872 111 222 2222 2367789
Q ss_pred cEEEcCCCCCCC-----ChhhhhccCceeccCHHHHhhccCC-------------CCCCHHHHHHHHHHHHhc-CCCEEE
Q 017101 228 PVIFDAGGMDAP-----IPQELLNFIDILSPNESELGRLTGM-------------PTDSYEQISEAVVKCHKM-GVQQVL 288 (377)
Q Consensus 228 ~v~~D~~~~~~~-----~~~~ll~~~dvl~~N~~E~~~l~g~-------------~~~~~~~~~~~~~~l~~~-g~~~vv 288 (377)
++.++..+.... .. .+++++|.+-+||+|+..+.+. +..+..++.+++..+++. +++.|.
T Consensus 262 ~iH~ElAs~~~~~~~~~i~-~ilp~vDSlGmNE~EL~~l~~~lg~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~l~rih 340 (455)
T 1ua4_A 262 PVHLEFAFTPDEKVREEIL-NVLGMFYSVGLNEVELASIMEILGEKKLAKELLAHDPVDPIAVTEAMLKLAKKTGVKRIH 340 (455)
T ss_dssp CEEEECCCCCCHHHHHHHH-HHGGGCSEEEECHHHHHHHHHHTTCHHHHHHTTSSSSCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred eEEEEeCCccCHHHHHHHH-hhhccCcccccCHHHHHHHHHHhCCCccccccccCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999876432 34 7889999999999999766432 112256666776666643 666443
No 73
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3
Probab=97.86 E-value=6e-05 Score=71.81 Aligned_cols=176 Identities=15% Similarity=0.058 Sum_probs=95.9
Q ss_pred cCCChHHHHHHHHHHcCCCceE--EEEecCCccHHHHHHHHHhCCCCcccEEeccC---------CCCCCceEEEEEecC
Q 017101 102 LAGGKGANQAACGAKLSHPTYF--VGQVGEDANGKLITDALSGCGVRLDYMNVVKD---------GGVPTGHAVVMLQSD 170 (377)
Q Consensus 102 ~~GG~~~NvA~~la~LG~~v~l--i~~vG~D~~G~~i~~~l~~~gVd~~~v~~~~~---------~~~~T~~~~~~~~~~ 170 (377)
+.||.+.-.|..++.+|.++.+ ++. .|+...+.|.+.+|..-.+.-.+- .+.+.-.-+++-.+.
T Consensus 112 ~mGGnA~imAn~la~lg~~~vl~~~~~-----~s~~~~~l~~~~~i~~p~~~~g~l~l~~~~e~~~~~~~~iH~I~Ey~~ 186 (457)
T 1l2l_A 112 RMGGQVGIMANLLGGVYGIPVIAHVPQ-----LSELQASLFLDGPIYVPTFERGELRLIHPREFRKGEEDCIHYIYEFPR 186 (457)
T ss_dssp EEESHHHHHHHHHTTTSCCCEEECCSS-----CCHHHHHTSCSSSEEEEC------CEECGGGC----CCCEEECCEECT
T ss_pred ccCchHHHHHHHHHHcCCCEEEEcCCC-----CCHHHHHhcCCCCeEeeeccCCceeccCchhhccCCCCcceEEEEcCC
Confidence 8999999999999999999877 443 445566666522222110000000 001122222222222
Q ss_pred C-----------CeeEEEECCCCCCCCCcCcCchhHHHHhh----cCEEEEccCC--CH----HH---HHHHHHHHHhCC
Q 017101 171 G-----------QNSIIIVGGTNMSCWPEKFGDEDLEVVKK----AGIVLLQREI--PD----SV---NIQVAKAARSAG 226 (377)
Q Consensus 171 g-----------~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~~~~~~~--~~----~~---~~~~~~~a~~~g 226 (377)
| +|-++..+..+.. -...+++.+.+.+ .|.++++|.. .. .. ....++..++.+
T Consensus 187 G~~~~~~~aPraNRfI~s~D~~N~~---l~~~e~f~~~l~e~~~~~d~~vlSG~q~l~~~~~~~~~~~~~~~i~~L~~~~ 263 (457)
T 1l2l_A 187 NFKVLDFEAPRENRFIGAADDYNPI---LYVREEWIERFEEIAKRSELAIISGLHPLTQENHGKPIKLVREHLKILNDLG 263 (457)
T ss_dssp TCEETTEECSSCEEEEEEECSSGGG---TCCCHHHHHSHHHHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCeecceecCCCCeEEEEcCCCCCC---CcccHHHHHHHHhhccCCCEEEEeccccccccchhhhHHHHHHHHHHhcCCC
Confidence 2 3333333322222 2233444444444 9999998832 11 11 112222336789
Q ss_pred CcEEEcCCCCCC-----CChhhhhccCceeccCHHHHhhc---cCC----------CCCCHHHHHHHHHHHHhc-CCCE
Q 017101 227 VPVIFDAGGMDA-----PIPQELLNFIDILSPNESELGRL---TGM----------PTDSYEQISEAVVKCHKM-GVQQ 286 (377)
Q Consensus 227 ~~v~~D~~~~~~-----~~~~~ll~~~dvl~~N~~E~~~l---~g~----------~~~~~~~~~~~~~~l~~~-g~~~ 286 (377)
+++-+...+... ... .+++++|.+-+||+|+..+ .|. +..+..++.+++..+++. +.+.
T Consensus 264 ~~iH~E~As~~~~~l~~~i~-~ilp~vDSlGmNEqELa~l~~~lg~~~l~~~i~~~~~~~v~~v~~~~~~ll~~~~l~r 341 (457)
T 1l2l_A 264 IRAHLEFAFTPDEVVRLEIV-KLLKHFYSVGLNEVELASVVSVMGEKELAERIISKDPADPIAVIEGLLKLIKETGVKR 341 (457)
T ss_dssp CEEEEECCCCSSHHHHHHHH-HHGGGCSEEEECHHHHHHHHHHTTCHHHHHHHHHSSSCCHHHHHHHHHHHHHHHCCSE
T ss_pred CeEEEEECCcccHHHHHHHH-hhccccccCccCHHHHHHHHHHcCCcccccccccCCccCHHHHHHHHHHHHHhcCCCe
Confidence 999999987642 234 7899999999999999764 331 112345666666666644 6663
No 74
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=97.80 E-value=0.00047 Score=65.82 Aligned_cols=177 Identities=16% Similarity=0.091 Sum_probs=96.0
Q ss_pred ecCCChHHHHHHHHHHcCCCceE--EEEecCCccHHHHHHHHHhCCCCccc-----EEec---c-CCCCCCceEEEEEec
Q 017101 101 TLAGGKGANQAACGAKLSHPTYF--VGQVGEDANGKLITDALSGCGVRLDY-----MNVV---K-DGGVPTGHAVVMLQS 169 (377)
Q Consensus 101 ~~~GG~~~NvA~~la~LG~~v~l--i~~vG~D~~G~~i~~~l~~~gVd~~~-----v~~~---~-~~~~~T~~~~~~~~~ 169 (377)
.+.||.+.-.|..++.+|.++.+ ++. .|+...+.|...+|..-. +... + -.+.+.-.-+++-.+
T Consensus 116 ~~mGGnAgimAn~la~lg~~~vl~~~~~-----~s~~~~~l~~~~~i~~p~~~~g~l~~~~~~ea~~~~~~~iH~I~Ey~ 190 (467)
T 1gc5_A 116 LRIGGQAGIMANLLGGVYRIPTIVHVPQ-----NPKLQAELFVDGPIYVPVFEGNKLKLVHPKDAIAEEEELIHYIYEFP 190 (467)
T ss_dssp EEEESHHHHHHHHHHHTSCCCEEECCSC-----CCHHHHTTSCSSSEEEEEECSSCEEEECGGGSCCSCCCCEEEEEEEC
T ss_pred cccCccHHHHHHHHHhcCCCEEEEcCCC-----CCHHHHHhcCCCCeeeeeccCCceecccchhhccCCCCcceEEEEcC
Confidence 38999999999999999999877 443 445666666533332110 0000 0 001122233333333
Q ss_pred CCC-----------eeEEEECCCCCCCCCcCcCchhHHHHhh----cCEEEEccC--C----C-----HHHHH---HHHH
Q 017101 170 DGQ-----------NSIIIVGGTNMSCWPEKFGDEDLEVVKK----AGIVLLQRE--I----P-----DSVNI---QVAK 220 (377)
Q Consensus 170 ~g~-----------~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~~~~~~--~----~-----~~~~~---~~~~ 220 (377)
.|+ |-++..+..+.. -...+++.+.+.. .|.++++|. + + .+.+. +.++
T Consensus 191 ~G~~~~~~~aPraNRfI~s~D~~N~~---l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~y~~g~~~~~~l~~~~~~l~ 267 (467)
T 1gc5_A 191 RGFQVFDVQAPRENRFIANADDYNAR---VYMRREFREGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHLN 267 (467)
T ss_dssp SSCEETTEECSSCEEEEEECCSSTTT---TCCCHHHHHSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHHH
T ss_pred CCCeecceeccCCceEEEecCCCCcc---ccccHHHHHHHHhhccCCCEEEEechhcccCccCCchhHHHHHHHHHHHHH
Confidence 332 333322222211 2234444444444 999999872 1 1 11122 2233
Q ss_pred HHHhCCCcEEEcCCCCCCC-----ChhhhhccCceeccCHHHHhhcc---CCC-------CCCHHHHHHHHHHHHhc-CC
Q 017101 221 AARSAGVPVIFDAGGMDAP-----IPQELLNFIDILSPNESELGRLT---GMP-------TDSYEQISEAVVKCHKM-GV 284 (377)
Q Consensus 221 ~a~~~g~~v~~D~~~~~~~-----~~~~ll~~~dvl~~N~~E~~~l~---g~~-------~~~~~~~~~~~~~l~~~-g~ 284 (377)
.....++++-+...+.... .. .+++++|.+-+||+|+..+. |.+ ..+..++.+++..+++. +.
T Consensus 268 ~l~~~~~~iH~E~As~~~~~l~~~i~-~ilp~vDSlGmNEqELa~l~~~lg~~~l~~~i~~p~v~~v~~~~~~ll~~~~l 346 (467)
T 1gc5_A 268 ILNRYNVKSHFEFAYTANRRVREALV-ELLPKFTSVGLNEVELASIMEIIGDEELAKEVLEGHIFSVIDAMNVLMDETGI 346 (467)
T ss_dssp HHHHTTCEEEEECCCCCCHHHHHHHH-HHGGGCSEEEECHHHHHHHHHHTTCHHHHHHHHTTCHHHHHHHHHHHHHHHCC
T ss_pred hhcCCCCeEEEEECCcccHHHHHHHH-hhccccccCccCHHHHHHHHHHcCCCcccccccCCCHHHHHHHHHHHHHhcCC
Confidence 3256789999999876432 34 78999999999999997433 322 01145555566665543 66
Q ss_pred CE
Q 017101 285 QQ 286 (377)
Q Consensus 285 ~~ 286 (377)
+.
T Consensus 347 ~r 348 (467)
T 1gc5_A 347 ER 348 (467)
T ss_dssp SE
T ss_pred Ce
Confidence 53
No 75
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=74.08 E-value=0.48 Score=33.13 Aligned_cols=22 Identities=23% Similarity=-0.022 Sum_probs=18.9
Q ss_pred ceecchHHHhhcCCCCccceee
Q 017101 14 LKFQNILAKQLNKPINTIPFHF 35 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (377)
-++|+|||+..|+++++++...
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIe 53 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIV 53 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHH
T ss_pred hcCHHHHHHHcCCCHHHHHHHH
Confidence 5789999999999999988433
No 76
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=67.36 E-value=0.85 Score=33.64 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=17.2
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
.+|+|||+.||+||.+|+-
T Consensus 35 ~tQ~eIA~~lGiSR~~Vsr 53 (101)
T 2w7n_A 35 KPQATFATSLGLTRGAVSQ 53 (101)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
Confidence 5799999999999999884
No 77
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=65.97 E-value=0.94 Score=33.37 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=17.4
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
.+|.|||+.||+||++|+.
T Consensus 59 ~TQREIA~~lGiS~stISR 77 (101)
T 1jhg_A 59 MSQRELKNELGAGIATITR 77 (101)
T ss_dssp SCHHHHHHHHCCCHHHHHH
T ss_pred cCHHHHHHHHCCChhhhhH
Confidence 6899999999999999985
No 78
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=65.05 E-value=0.96 Score=29.81 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=17.5
Q ss_pred eecchHHHhhcCCCCcccee
Q 017101 15 KFQNILAKQLNKPINTIPFH 34 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (377)
.+|.++|+.||+++.+|+--
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~w 30 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHH
Confidence 58999999999999888743
No 79
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=57.58 E-value=2.9 Score=28.34 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=17.1
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||.|+|+.+++++++|+-
T Consensus 25 ltq~elA~~~gvs~~tis~ 43 (73)
T 3fmy_A 25 LTQKEASEIFGGGVNAFSR 43 (73)
T ss_dssp CCHHHHHHHHCSCTTHHHH
T ss_pred CCHHHHHHHhCcCHHHHHH
Confidence 6899999999999988873
No 80
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=53.52 E-value=82 Score=24.97 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCcEEEcCCCCCC-CChhhhhccCceec-----cCHHHHhhccCCCCCCHHHHHHHHHHHHhcCCCE
Q 017101 213 SVNIQVAKAARSAGVPVIFDAGGMDA-PIPQELLNFIDILS-----PNESELGRLTGMPTDSYEQISEAVVKCHKMGVQQ 286 (377)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~ll~~~dvl~-----~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~ 286 (377)
+...++++.+++.|..+.+..++... ...+.+++..|.+. ++.+....+.|.+ .+.+.+.++.+.+.|.+.
T Consensus 19 ~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~~d~v~isld~~~~~~~~~~~g~~---~~~i~~~i~~l~~~g~~v 95 (182)
T 3can_A 19 EFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCELLLIDLKSMDSTVHQTFCDVP---NELILKNIRRVAEADFPY 95 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHTCSEEEEECCCSCHHHHHHHHSSC---SHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhhCCEEEEECCCCCHHHHHHHhCCC---HHHHHHHHHHHHhCCCeE
Confidence 44457888888888889888887532 23345556666543 3455556666643 256777777777777654
Q ss_pred E
Q 017101 287 V 287 (377)
Q Consensus 287 v 287 (377)
.
T Consensus 96 ~ 96 (182)
T 3can_A 96 Y 96 (182)
T ss_dssp E
T ss_pred E
Confidence 3
No 81
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=53.46 E-value=1.5 Score=29.95 Aligned_cols=32 Identities=6% Similarity=-0.035 Sum_probs=22.8
Q ss_pred cceecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 13 QLKFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
.+.+|++||+.||+++.+|+--+. ....|.+.
T Consensus 9 ~~G~~~~lA~~lGVs~~aVs~W~~--g~~iP~~~ 40 (71)
T 2hin_A 9 HFGDVEKAAVGVGVTPGAVYQWLQ--AGEIPPLR 40 (71)
T ss_dssp HHSSHHHHHHHHTSCHHHHHHHHH--HTSCCHHH
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHh--CCCCCHHH
Confidence 456899999999999988875443 33444433
No 82
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=52.14 E-value=2.3 Score=28.46 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=18.3
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
++|.|||+.+|+++++|+..+.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4789999999999999986444
No 83
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=50.60 E-value=2.6 Score=34.99 Aligned_cols=19 Identities=11% Similarity=-0.074 Sum_probs=17.5
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
.+|+|||+.||+||.+|+-
T Consensus 25 ~tQ~eIA~~lGiSr~~VSR 43 (192)
T 1zx4_A 25 MSQKDIAAKEGLSQAKVTR 43 (192)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHH
Confidence 6899999999999999985
No 84
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=49.50 E-value=3.7 Score=31.15 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=17.3
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||.|||+.+|+++++|+-
T Consensus 6 lTQ~eLA~~~Gvs~~~is~ 24 (122)
T 1nr3_A 6 WSQKKIARELKTTRQNVSA 24 (122)
T ss_dssp CSSCSTHHHHHHCCSSSCC
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 6899999999999999983
No 85
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=49.29 E-value=2.8 Score=28.25 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.9
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+|+++++++-
T Consensus 22 lsq~~lA~~~gis~~~is~ 40 (73)
T 3omt_A 22 KTNLWLTETLDKNKTTVSK 40 (73)
T ss_dssp CCHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888874
No 86
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=48.63 E-value=2.8 Score=29.88 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=17.0
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|||+.+++++++|+-
T Consensus 38 lTq~eLA~~~GiS~~tis~ 56 (88)
T 3t76_A 38 MKKGELREAVGVSKSTFAK 56 (88)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888874
No 87
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=48.54 E-value=2.9 Score=28.55 Aligned_cols=19 Identities=5% Similarity=-0.032 Sum_probs=16.9
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++|+-
T Consensus 16 lsq~~lA~~~gis~~~i~~ 34 (77)
T 2k9q_A 16 LTAKSVAEEMGISRQQLCN 34 (77)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 6899999999999888873
No 88
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=48.30 E-value=3 Score=28.75 Aligned_cols=19 Identities=5% Similarity=-0.005 Sum_probs=16.9
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+|+++++|+-
T Consensus 26 ltq~~lA~~~gvs~~~is~ 44 (80)
T 3kz3_A 26 LSYESVADKMGMGQSAVAA 44 (80)
T ss_dssp CCHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHH
Confidence 6899999999999888873
No 89
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=47.39 E-value=3.2 Score=26.23 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=17.0
Q ss_pred eecchHHHhhcCCCCcccee
Q 017101 15 KFQNILAKQLNKPINTIPFH 34 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (377)
.++.|||+.|++++++|..+
T Consensus 32 ~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 32 YTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp CCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 47899999999999888643
No 90
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=46.63 E-value=3.2 Score=26.99 Aligned_cols=19 Identities=32% Similarity=0.050 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++++-
T Consensus 15 ~s~~~lA~~~gis~~~i~~ 33 (66)
T 2xi8_A 15 ISQSELAALLEVSRQTING 33 (66)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 91
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=46.11 E-value=24 Score=25.97 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=26.8
Q ss_pred cCccCchHHHHHHHHHHHhCC-CCHHHHHHHH
Q 017101 317 IDTTGAGDTFTASFAVGFVEG-KSREECLRFA 347 (377)
Q Consensus 317 vdttGAGDaF~ag~l~~l~~g-~~l~~al~~a 347 (377)
.|..|-||..-|-++|+|++| .+.++|+..=
T Consensus 64 ~DKh~kGd~aEA~iAyAWleG~is~eEaveil 95 (133)
T 1ztd_A 64 VDKHAKGDYAEALIAKAWLMGLISEREAVEII 95 (133)
T ss_dssp GGTTCHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence 588899999999999999998 5888887653
No 92
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=45.77 E-value=3.3 Score=27.40 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++|+-
T Consensus 17 lsq~~lA~~~gis~~~i~~ 35 (71)
T 1zug_A 17 MTQTELATKAGVKQQSIQL 35 (71)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 5899999999999888873
No 93
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=44.73 E-value=3.6 Score=27.67 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=18.9
Q ss_pred ceecchHHHhhcCCCCccceee
Q 017101 14 LKFQNILAKQLNKPINTIPFHF 35 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (377)
+++|.|||+.+|+++++|+..+
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 5789999999999999998533
No 94
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=44.62 E-value=3.6 Score=26.93 Aligned_cols=19 Identities=21% Similarity=0.025 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++++-
T Consensus 19 ~s~~~lA~~~gis~~~i~~ 37 (68)
T 2r1j_L 19 IRQAALGKMVGVSNVAISQ 37 (68)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
Confidence 5899999999999888873
No 95
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=43.79 E-value=3.9 Score=24.66 Aligned_cols=21 Identities=5% Similarity=0.138 Sum_probs=17.2
Q ss_pred eecchHHHhhcCCCCccceee
Q 017101 15 KFQNILAKQLNKPINTIPFHF 35 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (377)
.++.|||+.|++++++|.-++
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 478899999999998886443
No 96
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=43.74 E-value=3.7 Score=26.95 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=16.1
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
++|.++|+.+++++++|+
T Consensus 15 lsq~~lA~~~gis~~~i~ 32 (69)
T 1r69_A 15 LNQAELAQKVGTTQQSIE 32 (69)
T ss_dssp CCHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 589999999999988876
No 97
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=43.63 E-value=3.8 Score=30.18 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=17.0
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+|+++++|+-
T Consensus 28 ltq~eLA~~lGis~~~is~ 46 (104)
T 3trb_A 28 MSANQLAKHLAIPTNRVTA 46 (104)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888873
No 98
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=43.27 E-value=3.9 Score=28.45 Aligned_cols=19 Identities=16% Similarity=-0.123 Sum_probs=16.9
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+++++++|+-
T Consensus 32 lsq~elA~~~gis~~~is~ 50 (83)
T 2a6c_A 32 LTQFKAAELLGVTQPRVSD 50 (83)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 99
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=41.73 E-value=4.2 Score=27.87 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=17.0
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||.+||+.+|+++++|+-
T Consensus 23 lT~~~LA~~~Gvs~stls~ 41 (74)
T 1neq_A 23 LSLSALSRQFGYAPTTLAN 41 (74)
T ss_dssp CCHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999988874
No 100
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=40.99 E-value=4.2 Score=27.15 Aligned_cols=19 Identities=26% Similarity=0.118 Sum_probs=17.2
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
.+|.++|+.|++++++|+-
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~ 32 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEE 32 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHH
Confidence 4999999999999999884
No 101
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=40.95 E-value=4.4 Score=27.43 Aligned_cols=19 Identities=16% Similarity=-0.076 Sum_probs=16.8
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+|+++++++-
T Consensus 21 ~sq~~lA~~~gis~~~i~~ 39 (78)
T 3b7h_A 21 LTINRVATLAGLNQSTVNA 39 (78)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888874
No 102
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=40.84 E-value=4.4 Score=27.82 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=16.7
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++++-
T Consensus 24 ltq~elA~~~gis~~~is~ 42 (78)
T 3qq6_A 24 YSLSELAEKAGVAKSYLSS 42 (78)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888873
No 103
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=40.70 E-value=4.5 Score=29.66 Aligned_cols=19 Identities=16% Similarity=-0.066 Sum_probs=17.0
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||.|+|+++|+++++|+-
T Consensus 50 lTQ~eLA~~~gvs~~~is~ 68 (101)
T 4ghj_A 50 LTQSEVAEIAGIARKTVLN 68 (101)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHcCCCHHHHHH
Confidence 6899999999999888873
No 104
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=40.52 E-value=4.5 Score=27.00 Aligned_cols=19 Identities=16% Similarity=-0.207 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++++-
T Consensus 27 ~s~~~lA~~~gis~~~i~~ 45 (74)
T 1y7y_A 27 LSQETLAFLSGLDRSYVGG 45 (74)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 105
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=40.30 E-value=4.5 Score=27.26 Aligned_cols=19 Identities=21% Similarity=-0.095 Sum_probs=16.7
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++++-
T Consensus 24 lsq~~lA~~~gis~~~i~~ 42 (77)
T 2b5a_A 24 VSQEELADLAGLHRTYISE 42 (77)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
Confidence 6899999999999888873
No 106
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=40.14 E-value=7.9 Score=29.60 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=17.3
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||.|+|+.+|+++++|+-
T Consensus 85 lsq~~la~~~g~s~~~i~~ 103 (133)
T 3o9x_A 85 LTQKEASEIFGGGVNAFSR 103 (133)
T ss_dssp CCHHHHHHHHCSCTTHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
Confidence 6899999999999999874
No 107
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=39.97 E-value=4.7 Score=27.07 Aligned_cols=19 Identities=21% Similarity=0.025 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++|+-
T Consensus 19 ls~~~lA~~~gis~~~i~~ 37 (76)
T 1adr_A 19 IRQAALGKMVGVSNVAISQ 37 (76)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 108
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=39.42 E-value=4.9 Score=28.16 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.7
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||.|+|+.+++++++|+-
T Consensus 28 ltq~elA~~~gis~~~is~ 46 (86)
T 3eus_A 28 LTQADLAERLDKPQSFVAK 46 (86)
T ss_dssp CCHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHH
Confidence 6899999999999888873
No 109
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=39.30 E-value=4.6 Score=27.65 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=16.3
Q ss_pred ecchHHHhhcCCCCccce
Q 017101 16 FQNILAKQLNKPINTIPF 33 (377)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (377)
+|.++|+.+|+++++|+-
T Consensus 13 sq~~lA~~lgvs~~~is~ 30 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISN 30 (79)
T ss_dssp SHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHH
Confidence 899999999999888873
No 110
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=39.27 E-value=6.3 Score=31.29 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=0.0
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||.|+|+.++++|++++-
T Consensus 15 ltq~elA~~lgis~~~vs~ 33 (158)
T 2p5t_A 15 LTQLEFARIVGISRNSLSR 33 (158)
T ss_dssp -------------------
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999999883
No 111
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=38.50 E-value=5.1 Score=27.58 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.5
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+|+++++++-
T Consensus 28 ltq~elA~~~gis~~~is~ 46 (83)
T 3f6w_A 28 ITQKELAARLGRPQSFVSK 46 (83)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888773
No 112
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=38.08 E-value=5.2 Score=27.84 Aligned_cols=19 Identities=32% Similarity=0.150 Sum_probs=16.7
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++|+-
T Consensus 26 lsq~~lA~~~gis~~~i~~ 44 (88)
T 2wiu_B 26 WTQSELAKKIGIKQATISN 44 (88)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 5899999999999888873
No 113
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=38.04 E-value=5.2 Score=27.50 Aligned_cols=19 Identities=26% Similarity=-0.062 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++++-
T Consensus 25 lsq~~lA~~~gis~~~i~~ 43 (82)
T 3s8q_A 25 MTQEDLAYKSNLDRTYISG 43 (82)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHH
Confidence 6899999999999888773
No 114
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=37.19 E-value=5.4 Score=27.39 Aligned_cols=19 Identities=26% Similarity=0.011 Sum_probs=16.5
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+|+++++|+-
T Consensus 24 lsq~~lA~~~gis~~~i~~ 42 (84)
T 2ef8_A 24 LSQSELAIFLGLSQSDISK 42 (84)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 5899999999999888763
No 115
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.88 E-value=3.8 Score=26.40 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=18.6
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
.++.|||+.|++|.++|..|..
T Consensus 14 ~s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 14 YTNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp CCSHHHHHHTCSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4789999999999999886654
No 116
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=36.62 E-value=5.8 Score=32.14 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=16.8
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
.||.|+|+.||++|++++
T Consensus 104 lTQ~elA~~LGvsr~tis 121 (170)
T 2auw_A 104 LSLTTAAEALGISRRMVS 121 (170)
T ss_dssp CCHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHhCCCHHHHH
Confidence 489999999999999998
No 117
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=36.27 E-value=5.7 Score=26.64 Aligned_cols=19 Identities=37% Similarity=0.380 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++++-
T Consensus 24 ~s~~~lA~~~gis~~~i~~ 42 (76)
T 3bs3_A 24 RTNRWLAEQMGKSENTISR 42 (76)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 118
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=36.02 E-value=5.8 Score=28.24 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=16.8
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++|+-
T Consensus 23 lsq~~lA~~~gis~~~is~ 41 (94)
T 2kpj_A 23 KTQLEIAKSIGVSPQTFNT 41 (94)
T ss_dssp SCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888874
No 119
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=35.51 E-value=6.1 Score=28.50 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=16.3
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
++|.++|+.+++++++|+
T Consensus 44 lsq~elA~~lgvs~~~is 61 (99)
T 2ppx_A 44 LTQEEFSARYHIPLGTLR 61 (99)
T ss_dssp CCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHhCcCHHHHH
Confidence 589999999999988887
No 120
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=35.40 E-value=1.8 Score=30.02 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=23.7
Q ss_pred ceecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 14 LKFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
-++..|||+.|++++++|.-++. .|+..|.+
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~--~L~~~G~I 61 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLY--SLAKKGKL 61 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHH--HHHHHTSE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHH--HHHHCCCE
Confidence 36889999999999988876655 56655544
No 121
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=34.48 E-value=6.5 Score=27.65 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+|+++++|+-
T Consensus 31 lsq~~lA~~~gis~~~is~ 49 (92)
T 1lmb_3 31 LSQESVADKMGMGQSGVGA 49 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 122
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=34.46 E-value=6.5 Score=29.76 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=16.9
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+++++++|+-
T Consensus 54 lTQ~eLA~~lGis~~~Is~ 72 (120)
T 2o38_A 54 LSQAAAAARLGINQPKVSA 72 (120)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 123
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=33.39 E-value=7 Score=25.79 Aligned_cols=18 Identities=0% Similarity=-0.224 Sum_probs=15.8
Q ss_pred eecchHHHhhc--CCCCccc
Q 017101 15 KFQNILAKQLN--KPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~--~~~~~~~ 32 (377)
++|.++|+.++ +++++++
T Consensus 22 lsq~~lA~~~g~~is~~~i~ 41 (71)
T 2ewt_A 22 LSLHGVEEKSQGRWKAVVVG 41 (71)
T ss_dssp CCHHHHHHHTTTSSCHHHHH
T ss_pred CCHHHHHHHHCCcCCHHHHH
Confidence 58999999999 8877776
No 124
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=33.31 E-value=1.9e+02 Score=25.98 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=24.8
Q ss_pred HHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEE
Q 017101 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIF 231 (377)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~ 231 (377)
+.+..+|+++.... ..+....+.+.+++.++|++.
T Consensus 121 ~~~~~~dvVv~~~d-~~~~r~~ln~~~~~~~ip~i~ 155 (346)
T 1y8q_A 121 SFFTQFDAVCLTCC-SRDVIVKVDQICHKNSIKFFT 155 (346)
T ss_dssp HHHTTCSEEEEESC-CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEE
Confidence 56788898876543 445556778888999987654
No 125
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.14 E-value=6.9 Score=23.78 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=16.7
Q ss_pred eecchHHHhhcCCCCcccee
Q 017101 15 KFQNILAKQLNKPINTIPFH 34 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (377)
.++.|||+.+++++++|.-+
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 57889999999998888643
No 126
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=32.72 E-value=7.2 Score=27.43 Aligned_cols=19 Identities=26% Similarity=0.151 Sum_probs=16.8
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+++++++|+-
T Consensus 27 lsq~~lA~~~gis~~~is~ 45 (91)
T 1x57_A 27 LTQKDLATKINEKPQVIAD 45 (91)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888873
No 127
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=32.67 E-value=7.3 Score=28.27 Aligned_cols=19 Identities=21% Similarity=-0.018 Sum_probs=16.8
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+|+++++|+-
T Consensus 32 ltq~~lA~~~gis~~~is~ 50 (104)
T 3cec_A 32 INTANFAEILGVSNQTIQE 50 (104)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888873
No 128
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=31.92 E-value=7.5 Score=27.54 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=16.7
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+|+++++|+-
T Consensus 22 ltq~~lA~~~gis~~~is~ 40 (94)
T 2ict_A 22 VSLREFARAMEIAPSTASR 40 (94)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 5899999999999888873
No 129
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=31.40 E-value=2.7 Score=30.18 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=24.6
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
++|.|||+.+++++++++-++. .+...|++
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~--~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIK--KFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHH--HHHHTTSE
T ss_pred cCHHHHHHHHCcCHHHHHHHHH--HHHHCcCc
Confidence 7899999999999999886655 66777755
No 130
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=30.87 E-value=8 Score=27.99 Aligned_cols=19 Identities=26% Similarity=-0.062 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+|+++++++-
T Consensus 42 ltq~elA~~~gis~~~is~ 60 (99)
T 3g5g_A 42 MTQEDLAYKSNLDRTYISG 60 (99)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888873
No 131
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=30.86 E-value=8.1 Score=27.58 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.7
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++|+-
T Consensus 18 ltq~~lA~~~gis~~~is~ 36 (99)
T 2l49_A 18 LSRQQLADLTGVPYGTLSY 36 (99)
T ss_dssp CCHHHHHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 132
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=30.31 E-value=8.5 Score=28.37 Aligned_cols=19 Identities=26% Similarity=0.113 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+|+++++|+-
T Consensus 25 lsq~~lA~~~gis~~~is~ 43 (113)
T 2eby_A 25 LKINELAELLHVHRNSVSA 43 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 133
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=29.89 E-value=2e+02 Score=23.50 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=53.3
Q ss_pred CEEEEccCCC---HHHHHHHHHHHHhCCCcEEEcCCCCC---CCChhhhhccCceec-----cCHHHHhhccCCCCCCHH
Q 017101 202 GIVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGMD---APIPQELLNFIDILS-----PNESELGRLTGMPTDSYE 270 (377)
Q Consensus 202 ~~~~~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~~~~ll~~~dvl~-----~N~~E~~~l~g~~~~~~~ 270 (377)
..+.+.|.-| ++.+.++++.+++.|..+.+..++.. .+....+++.+|.+. ++++....+.|.. .+
T Consensus 71 ~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~~~~~~~~~l~~~~~~v~isld~~~~~~~~~~~~~~---~~ 147 (245)
T 3c8f_A 71 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVS---NH 147 (245)
T ss_dssp CEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSSC---SH
T ss_pred CeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcCcCHHHHHHHHHhCCEEEEeCCCCCHHHhhhccCCC---HH
Confidence 4455554322 34457888999998998888887642 223445555566543 3666666776643 26
Q ss_pred HHHHHHHHHHhcCCCEE
Q 017101 271 QISEAVVKCHKMGVQQV 287 (377)
Q Consensus 271 ~~~~~~~~l~~~g~~~v 287 (377)
...+.++.+.+.|.+..
T Consensus 148 ~~~~~i~~l~~~g~~v~ 164 (245)
T 3c8f_A 148 RTLEFAKYLANKNVKVW 164 (245)
T ss_dssp HHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 77788888888887643
No 134
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=29.45 E-value=8.8 Score=28.18 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.9
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+++++++|+-
T Consensus 50 lsq~elA~~~gis~~~is~ 68 (107)
T 2jvl_A 50 MTQAELGKEIGETAATVAS 68 (107)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888873
No 135
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=29.35 E-value=8.8 Score=28.61 Aligned_cols=19 Identities=5% Similarity=-0.358 Sum_probs=16.5
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||+|+|+.++++++.|+-
T Consensus 21 lSq~eLA~~~gis~~~is~ 39 (112)
T 2wus_R 21 ITLLDASLFTNINPSKLKR 39 (112)
T ss_dssp CCHHHHHHHSSCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999888773
No 136
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=28.81 E-value=9.2 Score=28.32 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=16.2
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
++|.|+|+.+|+++++++
T Consensus 35 ltq~elA~~~gis~~~is 52 (114)
T 3vk0_A 35 WSQEELARQCGLDRTYVS 52 (114)
T ss_dssp CCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 689999999999988877
No 137
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=27.60 E-value=10 Score=27.99 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.1
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+|+++++++-
T Consensus 23 lsq~~lA~~~gis~~~i~~ 41 (114)
T 3op9_A 23 LKNHQIAELLNVQTRTVAY 41 (114)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 138
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=27.41 E-value=10 Score=28.07 Aligned_cols=19 Identities=21% Similarity=0.057 Sum_probs=16.6
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.|+|+.+|+++++|+-
T Consensus 37 ltq~elA~~~gis~~~is~ 55 (111)
T 3mlf_A 37 LTQKELGDLFKVSSRTIQN 55 (111)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888873
No 139
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.70 E-value=93 Score=23.23 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=33.8
Q ss_pred cCCChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCC
Q 017101 102 LAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (377)
Q Consensus 102 ~~GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gV 145 (377)
..||..-.....+.+-.....+|+.+.-+..-+.|++.+.+.|.
T Consensus 6 ~~~g~~~~~~~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~g~ 49 (123)
T 2dha_A 6 SGGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCP 49 (123)
T ss_dssp SSCCCCHHHHHHHHCCSCCEEEECSCCTTCCHHHHHHHHHTTSC
T ss_pred CCCCCchhHHhhccCCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 45666555666666545678899999989889999999999874
No 140
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=26.47 E-value=11 Score=29.34 Aligned_cols=19 Identities=21% Similarity=0.032 Sum_probs=16.9
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||.|+|+.+|+++++++-
T Consensus 82 lTq~elA~~lGis~s~is~ 100 (141)
T 3kxa_A 82 FTQSELATAAGLPQPYLSR 100 (141)
T ss_dssp CCHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5899999999999888874
No 141
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=26.10 E-value=11 Score=27.44 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=15.7
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
++|.++|+.+|+++++++
T Consensus 15 ltq~~lA~~~gis~~~i~ 32 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLS 32 (111)
T ss_dssp CCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 589999999999988877
No 142
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=25.93 E-value=11 Score=27.81 Aligned_cols=19 Identities=11% Similarity=-0.144 Sum_probs=16.4
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
++|.++|+.+|+++++++-
T Consensus 42 lsq~~lA~~~gis~~~is~ 60 (117)
T 3f52_A 42 VTLRELAEASRVSPGYLSE 60 (117)
T ss_dssp CCHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 6899999999999887773
No 143
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=25.67 E-value=11 Score=28.74 Aligned_cols=18 Identities=6% Similarity=-0.092 Sum_probs=16.2
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
+||+|+|++++++++.++
T Consensus 17 ltq~elA~~~gis~~~is 34 (130)
T 3fym_A 17 MTLTELEQRTGIKREMLV 34 (130)
T ss_dssp CCHHHHHHHHCCCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 689999999999988877
No 144
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=25.34 E-value=11 Score=24.53 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=17.1
Q ss_pred ceecchHHHhhcCCCCccce
Q 017101 14 LKFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (377)
..+|.++|+.+++++++|+-
T Consensus 13 ~gs~~~~A~~lgis~~~vs~ 32 (67)
T 2pij_A 13 HGTQSALAAALGVNQSAISQ 32 (67)
T ss_dssp TCCHHHHHHHHTSCHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHH
Confidence 34899999999999888874
No 145
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=25.05 E-value=12 Score=28.19 Aligned_cols=19 Identities=0% Similarity=-0.109 Sum_probs=16.0
Q ss_pred eecchHHHhhcCCCCccce
Q 017101 15 KFQNILAKQLNKPINTIPF 33 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (377)
+||.++|+.+|+++++++-
T Consensus 26 lsq~~lA~~~gis~~~is~ 44 (126)
T 3ivp_A 26 LTREQVGAMIEIDPRYLTN 44 (126)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHH
Confidence 5889999999999888773
No 146
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=25.02 E-value=9.2 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=24.1
Q ss_pred ceecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 14 LKFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
=|+|.||++.++.+.+++.-.+. .|+..+++
T Consensus 36 gi~qkeLa~~~~l~~~tvt~iLk--~LE~kglI 66 (91)
T 2dk5_A 36 GIWSRDVRYKSNLPLTEINKILK--NLESKKLI 66 (91)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHH--HHHHTTSE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHH--HHHHCCCE
Confidence 48999999999999877765444 66777755
No 147
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=24.62 E-value=14 Score=24.48 Aligned_cols=30 Identities=13% Similarity=-0.048 Sum_probs=22.4
Q ss_pred ceecchHHHhhcCCCCccceeeeeccCCcchh
Q 017101 14 LKFQNILAKQLNKPINTIPFHFTITNRQFPAH 45 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (377)
-++-.|||+.+++||++|.-++. .+..-|+
T Consensus 25 ~~s~~eLA~~lglsr~tv~~~l~--~L~~~G~ 54 (67)
T 2heo_A 25 PVAIFQLVKKCQVPKKTLNQVLY--RLKKEDR 54 (67)
T ss_dssp CEEHHHHHHHHCSCHHHHHHHHH--HHHHTTS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHH--HHHHCCc
Confidence 36778999999999999876655 4444443
No 148
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=23.78 E-value=21 Score=26.90 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=47.0
Q ss_pred hcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCCCCC---CCChhhhhccCceeccCHHHHhhccCCCCCCHHHHHHHH
Q 017101 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD---APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAV 276 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~~~~ll~~~dvl~~N~~E~~~l~g~~~~~~~~~~~~~ 276 (377)
.++.+...|.++.+....+.+.++.+++.++.|+.... +..+...++.+...+....+. |....+.+.+.++.
T Consensus 26 ~~~iI~t~Gsi~~~~l~~I~~~~~~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r~~~----gVE~a~~~~I~~aL 101 (119)
T 2fcj_A 26 PVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYR----EVAAAPIWHLAQVL 101 (119)
T ss_dssp CCEEEECCSCCCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCTTTC----STTTSCHHHHHHHH
T ss_pred CCCEEEeCCccCHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccCCcc----CcccCCHHHHHHHH
Confidence 45667777777777666666766677887777885321 122346677787777777653 65555555655554
Q ss_pred H
Q 017101 277 V 277 (377)
Q Consensus 277 ~ 277 (377)
.
T Consensus 102 ~ 102 (119)
T 2fcj_A 102 L 102 (119)
T ss_dssp H
T ss_pred H
Confidence 4
No 149
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=23.77 E-value=13 Score=26.50 Aligned_cols=16 Identities=13% Similarity=-0.149 Sum_probs=14.4
Q ss_pred eecchHHHhhcCCCCc
Q 017101 15 KFQNILAKQLNKPINT 30 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~ 30 (377)
+||.|+|+.+|+++++
T Consensus 15 lsq~~lA~~~gis~~~ 30 (98)
T 3lfp_A 15 ISQEKLGVLAGIDEAS 30 (98)
T ss_dssp CCHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHhCCCcch
Confidence 5899999999999887
No 150
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=23.66 E-value=13 Score=24.42 Aligned_cols=22 Identities=14% Similarity=-0.121 Sum_probs=18.0
Q ss_pred ceecchHHHhhcCCCCccceee
Q 017101 14 LKFQNILAKQLNKPINTIPFHF 35 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (377)
=.+..|||+.+|+|+++|..+.
T Consensus 25 g~s~~eIA~~lgis~~tV~~~~ 46 (68)
T 2p7v_B 25 DYTLEEVGKQFDVTRERIRQIE 46 (68)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 3578999999999988887543
No 151
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=23.16 E-value=1.7e+02 Score=26.80 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEcCCCCCCCChhhhhccCceeccCHHHHh------hcc--CCC------C-CCHHHHHHHH
Q 017101 212 DSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELG------RLT--GMP------T-DSYEQISEAV 276 (377)
Q Consensus 212 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dvl~~N~~E~~------~l~--g~~------~-~~~~~~~~~~ 276 (377)
.+....+.+.+++.|++++-++-.. ...+.+.+++|++++.-.+.. .+. |.+ . .+.+++..++
T Consensus 192 ~egl~~L~~~~~~~Gl~~~te~~d~--~~~~~l~~~vd~lkIgs~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Av 269 (385)
T 3nvt_A 192 LEGLKILKRVSDEYGLGVISEIVTP--ADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIEEFIGAA 269 (385)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSG--GGHHHHTTTCSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCH--HHHHHHHhhCCEEEECcccccCHHHHHHHHccCCcEEEecCCCCCHHHHHHHH
Confidence 3445677788889999999988542 334556677898876554432 222 211 1 4678888899
Q ss_pred HHHHhcCCCE-EEEeeCCC
Q 017101 277 VKCHKMGVQQ-VLVKLGAK 294 (377)
Q Consensus 277 ~~l~~~g~~~-vvvT~G~~ 294 (377)
+.+.+.|.+. +++-+|-.
T Consensus 270 e~i~~~Gn~~i~L~~rG~s 288 (385)
T 3nvt_A 270 EYIMSQGNGKIILCERGIR 288 (385)
T ss_dssp HHHHTTTCCCEEEEECCBC
T ss_pred HHHHHcCCCeEEEEECCCC
Confidence 9888887654 44444543
No 152
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.00 E-value=9 Score=26.57 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=18.4
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
.+++|||+.|+++.++|..|+.
T Consensus 37 ~s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 37 LPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 5789999999999988876553
No 153
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=22.86 E-value=7.6 Score=29.41 Aligned_cols=31 Identities=6% Similarity=-0.115 Sum_probs=25.3
Q ss_pred ceecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 14 LKFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
-++|.|||+.+++++++++..+. .+...|++
T Consensus 53 ~~t~~eLa~~l~~~~~tvs~~l~--~Le~~Glv 83 (127)
T 2frh_A 53 EYYLKDIINHLNYKQPQVVKAVK--ILSQEDYF 83 (127)
T ss_dssp EEEHHHHHHHSSSHHHHHHHHHH--HHHHTTSS
T ss_pred CcCHHHHHHHHCCCHHHHHHHHH--HHHHCCCE
Confidence 37899999999999988886665 77777755
No 154
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=22.72 E-value=57 Score=24.97 Aligned_cols=38 Identities=5% Similarity=0.108 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHcCCCceEEEEecCCccHHHHHHHHHhCCCCc
Q 017101 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (377)
Q Consensus 104 GG~~~NvA~~la~LG~~v~li~~vG~D~~G~~i~~~l~~~gVd~ 147 (377)
+|.+...+..|+..|+++.+++.+|. ...+.|++ ||++
T Consensus 65 ~g~g~~~~~~L~~~gv~~VI~g~iG~-----~a~~~L~~-GI~v 102 (136)
T 2re2_A 65 AARGVFMLKSALDHGANALVLSEIGS-----PGFNFIKN-KMDV 102 (136)
T ss_dssp SCHHHHHHHHHHHTTCSEEEESCCBH-----HHHHHHTT-TSEE
T ss_pred CCccHHHHHHHHHcCCCEEEECCCCH-----hHHHHHHC-CCEE
Confidence 57777889999999999999998764 45688898 9874
No 155
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.57 E-value=9.2 Score=25.48 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.4
Q ss_pred eecchHHHhhcCCCCccceeee
Q 017101 15 KFQNILAKQLNKPINTIPFHFT 36 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (377)
.+..|||+.+++|+++|..|+.
T Consensus 27 ~s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 27 KTTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 4789999999999888876554
No 156
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=22.38 E-value=5.2 Score=28.60 Aligned_cols=31 Identities=10% Similarity=-0.253 Sum_probs=24.4
Q ss_pred ceecchHHHhhcCCCCc-cceeeeeccCCcchhh
Q 017101 14 LKFQNILAKQLNKPINT-IPFHFTITNRQFPAHV 46 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 46 (377)
-+++.|||+.+++++++ ++.++. .+...|++
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~--~Le~~Glv 61 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKD--RLIRAGLV 61 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHH--HHHHTTSE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHH--HHHHCCCe
Confidence 36899999999999998 886665 66666644
No 157
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=22.21 E-value=17 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=24.5
Q ss_pred ceecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 14 LKFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
+-+..|||+.+++||++|.-++. .+..-|.+
T Consensus 35 lps~~eLa~~~~vSr~tvr~al~--~L~~~Gli 65 (102)
T 1v4r_A 35 LPSVADIRAQFGVAAKTVSRALA--VLKSEGLV 65 (102)
T ss_dssp CCCHHHHHHHSSSCTTHHHHHTT--TTTTSSCC
T ss_pred CcCHHHHHHHHCcCHHHHHHHHH--HHHHCCCE
Confidence 33889999999999999987766 66666643
No 158
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.06 E-value=1.7e+02 Score=21.37 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=31.7
Q ss_pred hHHHHhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEcCC
Q 017101 194 DLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAG 234 (377)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (377)
.++....-|++++-..-..+.+...++.|+++|+.+++--+
T Consensus 71 iwerypqldvvvivttddkewikdfieeakergvevfvvyn 111 (162)
T 2l82_A 71 IWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYN 111 (162)
T ss_dssp HHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEec
Confidence 34566677888887777788888999999999997766443
No 159
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=21.92 E-value=14 Score=25.37 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=15.7
Q ss_pred ecchHHHhhcCCCCccc
Q 017101 16 FQNILAKQLNKPINTIP 32 (377)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (377)
+|.++|+.+|+++++++
T Consensus 29 sq~~lA~~~gis~~~is 45 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLR 45 (86)
T ss_dssp CHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHhCCCHHHHH
Confidence 89999999999988887
No 160
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=21.13 E-value=1.1e+02 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=26.1
Q ss_pred hcCEEEEccCCCHHHHHHHHHHHHhCCCcEEEc
Q 017101 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD 232 (377)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D 232 (377)
.+..+++....+++....+...|+++++|+++-
T Consensus 27 kaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v 59 (82)
T 3v7e_A 27 SVKEVVVAKDADPILTSSVVSLAEDQGISVSMV 59 (82)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 466788888888887788888899999987653
No 161
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=20.99 E-value=19 Score=23.83 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=16.4
Q ss_pred ceecchHHHhhcCCCCccc
Q 017101 14 LKFQNILAKQLNKPINTIP 32 (377)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (377)
+++..|+|+.|++|++|+.
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~ 20 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQ 20 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHH
Confidence 4688999999999988875
No 162
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=20.88 E-value=78 Score=26.86 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=22.9
Q ss_pred ecCCChHHHHHHHHHHcCCCceEEEE
Q 017101 101 TLAGGKGANQAACGAKLSHPTYFVGQ 126 (377)
Q Consensus 101 ~~~GG~~~NvA~~la~LG~~v~li~~ 126 (377)
.+.|+-|.-+|..+++.|.+|.+++.
T Consensus 26 ~SSG~mG~aiA~~~~~~Ga~V~lv~~ 51 (232)
T 2gk4_A 26 HSTGHLGKIITETLLSAGYEVCLITT 51 (232)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 56788999999999999999999875
No 163
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=20.47 E-value=1.1e+02 Score=25.57 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=33.2
Q ss_pred hhcCEEEEcc--CCCHHHHHHHHHHHHhCCCcEEE-----cCCCCCCCChhhhhccCceec
Q 017101 199 KKAGIVLLQR--EIPDSVNIQVAKAARSAGVPVIF-----DAGGMDAPIPQELLNFIDILS 252 (377)
Q Consensus 199 ~~~~~~~~~~--~~~~~~~~~~~~~a~~~g~~v~~-----D~~~~~~~~~~~ll~~~dvl~ 252 (377)
...+++.++- .++++.+..+.+.+ +.|++|++ |...........+++.+|-+.
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la-~~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~ 159 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLS-ADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVT 159 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHH-HTTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHH-HCCCEEEEeecccccccCCCccHHHHHHhcceEE
Confidence 4578888874 44556666666666 68999876 223333334566777777553
No 164
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=20.43 E-value=4.1e+02 Score=23.74 Aligned_cols=34 Identities=26% Similarity=0.200 Sum_probs=22.7
Q ss_pred HhhcCEEEEccCCCHHHHHHHHHHHHhCCCcEEE
Q 017101 198 VKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIF 231 (377)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~ 231 (377)
+..+|+++.....+......+-+.+++.++|++.
T Consensus 206 ~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~ 239 (353)
T 3h5n_A 206 VPEADIWVVSADHPFNLINWVNKYCVRANQPYIN 239 (353)
T ss_dssp SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEE
T ss_pred hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEE
Confidence 6788988765443332444566788889998754
No 165
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=20.25 E-value=24 Score=22.82 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.1
Q ss_pred eecchHHHhhcCCCCccc
Q 017101 15 KFQNILAKQLNKPINTIP 32 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (377)
.++.+.|+.||++|+++-
T Consensus 34 gn~~~aA~~LGIsr~tL~ 51 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIA 51 (61)
T ss_dssp CSHHHHHHHTTSCTHHHH
T ss_pred CCHHHHHHHhCCCHHHHH
Confidence 467899999999988764
No 166
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=20.08 E-value=6.4 Score=29.85 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=24.2
Q ss_pred eecchHHHhhcCCCCccceeeeeccCCcchhh
Q 017101 15 KFQNILAKQLNKPINTIPFHFTITNRQFPAHV 46 (377)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (377)
+++.|||+.+++++++|.-++. .+...|++
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~--~L~~~GlV 72 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVK--KLHEKEIL 72 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHH--HHHHTTSE
T ss_pred cCHHHHHHHHCcCHHHHHHHHH--HHHHCCCE
Confidence 7899999999999999986665 66666644
Done!