BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017103
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 127 CPNSCTFNGDCV-DGKCHCFLGFHGHDCSKRSCPDNCNGHGKCLSNGACECENGYTGIDC 185
C +C G C GKC C G G C CP C GKC+ C+C GY G C
Sbjct: 215 CSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLC 274
Query: 186 STAVCDEQCSLHG 198
S VC+ C HG
Sbjct: 275 SKPVCEPGCGAHG 287
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 126 QCPNSCTFNGDCVDGK-CHCFLGFHGHDCSKRSCPDNCNGHGKCLSNGACECENGYTGID 184
+CP C G C + + C C GFHG C K C C G C++ G C C G+ G++
Sbjct: 150 ECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVN 209
Query: 185 CSTAVCDEQCSLHGGVC 201
C A C C +GG C
Sbjct: 210 CDKANCSTTC-FNGGTC 225
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 103 FNGELICPAYHELCSTGPIAVFGQCPNSCTFNGDCV-DGKCHCFLGFHGHDCSKRSCPDN 161
+ G+ ICP E G +CP C G C+ KC C G+ G CSK C
Sbjct: 227 YPGKCICPPGLE----GEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPG 282
Query: 162 CNGHGKCLSNGACECENGYTGIDCS 186
C HG C C+C+ G+ G C+
Sbjct: 283 CGAHGTCHEPNKCQCQEGWHGRHCN 307
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 153 CSKRSCPDNCNGHGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVC 201
C + CP C G C CEC +G+ G C A+C +C ++GG+C
Sbjct: 146 CQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRC-MNGGLC 193
>pdb|1LML|A Chain A, Leishmanolysin
Length = 478
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 6 GGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCM 50
G S+ DYC V YSDGSCT S + V +RC+
Sbjct: 347 AGVSAFMDYCPVVVPYSDGSCTQRASEAHASLLPFNVFSDAARCI 391
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 134 NGDCVD-GKCHCFLGFHGHDCSKRSCPDNCNGHGKCLSNGACECENGYTGIDCSTA 188
NG C GKC C G+ G C C C G C+ C C+ GY G C
Sbjct: 401 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQV 456
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 165 HGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVC 201
+G C G C C G+ G C TA C+ C HGGVC
Sbjct: 401 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACR-HGGVC 436
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 134 NGDCVD-GKCHCFLGFHGHDCSKRSCPDNCNGHGKCLSNGACECENGYTGIDCSTA 188
NG C GKC C G+ G C C C G C+ C C+ GY G C
Sbjct: 401 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQV 456
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 165 HGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVC 201
+G C G C C G+ G C TA C+ C HGGVC
Sbjct: 401 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACR-HGGVC 436
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 134 NGDCVD-GKCHCFLGFHGHDCSKRSCPDNCNGHGKCLSNGACECENGYTGIDCSTA 188
NG C GKC C G+ G C C C G C+ C C+ GY G C
Sbjct: 401 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQV 456
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 165 HGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVC 201
+G C G C C G+ G C TA C+ C HGGVC
Sbjct: 401 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACR-HGGVC 436
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 134 NGDCVD-GKCHCFLGFHGHDCSKRSCPDNCNGHGKCLSNGACECENGYTGIDCS 186
NG C GKC C G+ G C C C G C+ C C+ GY G C
Sbjct: 422 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 475
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 165 HGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVC 201
+G C G C C G+ G C TA C+ C HGGVC
Sbjct: 422 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACR-HGGVC 457
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 129 NSCTFNGDCVDG----KCHCFLGFHGHDCS--KRSCPDN-CNGHGKCLSN---GACECEN 178
N C G C++ +C C G+ G C C N C CL C C
Sbjct: 13 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 72
Query: 179 GYTGIDC--STAVCDEQCSLHGGVCDNGVCEFRCSDYAGYT 217
GY G+ C +T C LH G C + + EF+C G+T
Sbjct: 73 GYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 113
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 224 LISSLSVCKYVLEKDAGGQHCAPSESSILQQ 254
LISSL V Y L AGGQ C S S +L Q
Sbjct: 224 LISSLVVLVYFLPAQAGGQKCTLSISVLLAQ 254
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 134 NGDCVD-GKCHCFLGFHGHDCSKRSCPDNCNGHGKCLSNGACECENGYTGIDCS 186
NG C GKC C G+ G C C C G C+ C C+ GY G C
Sbjct: 422 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 475
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 165 HGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVC 201
+G C G C C G+ G C TA C+ C HGGVC
Sbjct: 422 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACR-HGGVC 457
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 129 NSCTFNGDCVD--GKCHCFLGFHGHDCSK--------RSCPDNCNGHGKCLS-------N 171
+C NG C + G+C C GF G C K R+C + C+G C S
Sbjct: 203 TACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDP 262
Query: 172 GACECENGYTGIDCSTA 188
C C G+ G+ C+ A
Sbjct: 263 YGCSCATGWKGLQCNEA 279
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 224 LISSLSVCKYVLEKDAGGQHCAPSESSILQQ 254
LISSL V Y L AGGQ C S S +L Q
Sbjct: 14 LISSLVVLVYFLPAQAGGQKCTLSISVLLAQ 44
>pdb|2DDU|A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin
Length = 387
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 158 CPDNCNGHGKCLSNGACECENGYTG 182
CP C+GHG C+S G C C+ GYT
Sbjct: 194 CPSYCSGHGDCIS-GVCFCDLGYTA 217
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 127 CPNSCTFNGDCVDGKCHCFLGFHGHDCSKRSCPDNCNGHGKCL 169
CP+ C+ +GDC+ G C C LG+ ++ +C N H +
Sbjct: 194 CPSYCSGHGDCISGVCFCDLGY---TAAQGTCVSNTPNHSEMF 233
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 224 LISSLSVCKYVLEKDAGGQHCAPSESSILQQ 254
LISSL V Y L AGGQ C S S +L Q
Sbjct: 231 LISSLVVLVYFLPAQAGGQKCTLSISVLLAQ 261
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 155 KRSCPDNCNGHGKCLS---NGACECENGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCS 211
+ C C GHG C+ + +C+C +G+ G C V CSL DNG C C
Sbjct: 15 EHPCASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSL-----DNGGCTHYCL 69
Query: 212 DYAGY---TCQNSSKLISSLSVCKYVLEKDAG 240
+ G+ +C KL L C ++ G
Sbjct: 70 EEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCG 101
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 155 KRSCPDNCNGHGKCLS---NGACECENGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCS 211
+ C C GHG C+ + +C+C +G+ G C V CSL DNG C C
Sbjct: 8 EHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL-----DNGGCTHYCL 62
Query: 212 DYAGY---TCQNSSKLISSLSVCKYVLEKDAG 240
+ G+ +C KL L C ++ G
Sbjct: 63 EEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCG 94
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 158 CPDNCNGHGKCLSNGACECENGYTGIDCSTAV 189
C + C GHG C++ C C+ GY+G C +
Sbjct: 188 CEEMCYGHGSCINGTKCICDPGYSGPTCKIST 219
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 158 CPDNCNGHGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVCDN 203
C D C+GHG+C+ G+C C+ + G+ C + + SL + DN
Sbjct: 537 CLDMCSGHGRCV-QGSCVCDEQWGGLYCD----EPETSLPTQLKDN 577
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 158 CPDNCNGHGKCLSNGACECENGYTGIDCSTAV 189
C + C GHG C++ C C+ GY+G C +
Sbjct: 188 CEEMCYGHGSCINGTKCICDPGYSGPTCKIST 219
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 158 CPDNCNGHGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVCDN 203
C D C+GHG+C+ G+C C+ + G+ C + + SL + DN
Sbjct: 537 CLDMCSGHGRCV-QGSCVCDEQWGGLYCD----EPETSLPTQLKDN 577
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 129 NSCTFNGDCVDG----KCHCFLGFHGHDCS--KRSCPDN-CNGHGKCLSNGA---CECEN 178
N C G C++ +C C G+ G C C N C CL C C
Sbjct: 11 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 70
Query: 179 GYTGIDC--STAVCDEQCSLHGGVCDNGVCEFRCSDYAGYT 217
GY G+ C +T C LH G C + + EF+C G+T
Sbjct: 71 GYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 111
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 148 FHGHDCSKRSCP-DNCNGHGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVC 201
++G C+K P D+ GH C NG C G+ G +C+ A+C + CS G C
Sbjct: 25 YYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSC 79
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 144 CFLGFHGHDCSKRSCPDNCN-GHGKCLSNGACECENGYTGIDCSTAVCDEQCSLHGGVCD 202
C G+ G +C++ C C+ HG C G C C+ G+ G+ C ++C H G C
Sbjct: 54 CMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYC------DKCIPHPG-CV 106
Query: 203 NGVC 206
+G+C
Sbjct: 107 HGIC 110
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 162 CNGHGKC---LSNGACECENGYTGIDCSTAV 189
C+GHG+C ++N C+C+ G++G+ C V
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 162 CNGHGKC---LSNGACECENGYTGIDCSTAV 189
C+GHG+C ++N C+C+ G++G+ C V
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 135 GDCVDGKCHCFLGFHGHDCSKRSC-PDNCNGHGKC---LSNGACECENGYTGIDCSTAVC 190
G D CH C SC P +C+GHG+C ++N C C+ GY G C
Sbjct: 102 GKWNDDACH---KLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQV 158
Query: 191 D 191
D
Sbjct: 159 D 159
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 135 GDCVDGKCHCFLGFHGHDCSKRSCPD--------NCNGHGKCLSNGACECENGY 180
G C GKC C GF G C + C+G G+C N CEC +GY
Sbjct: 533 GLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN-VCECHSGY 585
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 161 NCNGHGKCLSNG-------ACECENGYTGIDCSTAV 189
NC+ HG+ +G CEC YTG DCS +
Sbjct: 19 NCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKI 54
>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form
pdb|2HOX|A Chain A, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|B Chain B, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|C Chain C, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|D Chain D, Alliinase From Allium Sativum (Garlic)
Length = 427
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 161 NCNGHGKCLSNG-------ACECENGYTGIDCSTAV 189
NC+ HG+ +G CEC YTG DCS +
Sbjct: 19 NCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKI 54
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 153 CSKRSCPDNCNGHGKCLSNGACECENGYTGIDCS 186
C + CP C G C CEC +G+ G C
Sbjct: 146 CQQAECPGGCRNGGFCNERRICECPDGFHGPHCE 179
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 153 CSKRSCPDNCNGHGKCLSNGACECENGYTGIDCS 186
C + CP C G C CEC +G+ G C
Sbjct: 146 CQQAECPGGCRNGGFCNERRICECPDGFHGPHCE 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,464,754
Number of Sequences: 62578
Number of extensions: 549351
Number of successful extensions: 1158
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 155
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)