Query 017105
Match_columns 377
No_of_seqs 106 out of 123
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1340 Uncharacterized archae 98.8 5.1E-07 1.1E-11 88.9 20.5 150 16-180 93-242 (294)
2 PRK04778 septation ring format 96.8 0.13 2.8E-06 55.0 19.8 94 99-192 351-444 (569)
3 TIGR00606 rad50 rad50. This fa 96.1 0.6 1.3E-05 54.6 20.9 144 29-185 820-967 (1311)
4 PRK11637 AmiB activator; Provi 95.8 0.27 5.8E-06 50.6 15.0 68 105-172 70-137 (428)
5 PRK03918 chromosome segregatio 95.5 3.5 7.7E-05 45.6 23.0 31 93-123 616-646 (880)
6 COG1579 Zn-ribbon protein, pos 95.5 1.4 3E-05 43.1 17.3 125 35-176 14-141 (239)
7 COG1340 Uncharacterized archae 95.4 1.4 3E-05 44.2 17.5 71 110-180 158-228 (294)
8 PRK03918 chromosome segregatio 95.0 6.2 0.00013 43.7 22.9 6 196-201 743-748 (880)
9 PRK11637 AmiB activator; Provi 94.9 0.64 1.4E-05 47.8 14.1 73 97-169 55-127 (428)
10 KOG0977 Nuclear envelope prote 94.7 7.6 0.00017 42.1 21.9 187 5-202 41-281 (546)
11 PF06160 EzrA: Septation ring 94.6 5.8 0.00013 42.7 21.0 92 99-190 347-438 (560)
12 COG1196 Smc Chromosome segrega 94.5 4.9 0.00011 46.7 21.3 101 104-206 815-915 (1163)
13 KOG0964 Structural maintenance 94.2 14 0.00029 42.9 23.1 201 5-219 677-932 (1200)
14 PRK09039 hypothetical protein; 94.1 2.4 5.3E-05 42.9 15.9 72 94-165 114-185 (343)
15 PRK04778 septation ring format 94.0 10 0.00022 40.8 23.4 112 82-193 355-477 (569)
16 PRK02224 chromosome segregatio 93.9 10 0.00022 42.2 21.5 42 123-164 598-639 (880)
17 PHA02562 46 endonuclease subun 93.6 10 0.00022 39.7 20.0 76 95-170 329-404 (562)
18 PF10146 zf-C4H2: Zinc finger- 93.4 2.7 5.9E-05 40.6 14.2 84 67-157 3-86 (230)
19 PRK09039 hypothetical protein; 93.3 10 0.00023 38.4 21.3 74 106-179 112-185 (343)
20 COG1196 Smc Chromosome segrega 93.2 20 0.00043 41.9 23.1 21 33-53 297-317 (1163)
21 KOG0161 Myosin class II heavy 93.2 15 0.00032 45.4 22.5 172 35-209 1010-1202(1930)
22 TIGR00606 rad50 rad50. This fa 93.2 17 0.00036 43.0 22.7 38 186-223 636-673 (1311)
23 COG1579 Zn-ribbon protein, pos 93.0 4.2 9.2E-05 39.7 14.9 29 143-171 154-182 (239)
24 KOG0250 DNA repair protein RAD 92.5 20 0.00043 41.8 21.1 125 54-178 244-370 (1074)
25 KOG0250 DNA repair protein RAD 92.0 11 0.00023 43.9 18.4 44 3-49 249-292 (1074)
26 KOG0962 DNA repair protein RAD 91.8 12 0.00027 44.2 18.9 117 118-239 872-992 (1294)
27 PF12325 TMF_TATA_bd: TATA ele 91.8 5.5 0.00012 35.0 12.7 51 152-202 68-120 (120)
28 TIGR02169 SMC_prok_A chromosom 91.7 15 0.00032 41.4 19.2 12 213-224 535-546 (1164)
29 PHA02562 46 endonuclease subun 90.6 24 0.00053 36.9 22.9 22 201-222 407-428 (562)
30 PF08317 Spc7: Spc7 kinetochor 90.5 12 0.00026 37.4 15.5 54 111-164 210-263 (325)
31 PF14197 Cep57_CLD_2: Centroso 90.2 4.6 0.0001 32.2 9.8 60 108-167 3-62 (69)
32 PF07106 TBPIP: Tat binding pr 90.0 4.7 0.0001 36.3 11.1 63 97-159 73-137 (169)
33 KOG0018 Structural maintenance 89.7 18 0.00039 42.1 17.4 110 72-182 382-495 (1141)
34 cd07627 BAR_Vps5p The Bin/Amph 89.4 19 0.00041 33.8 16.2 186 1-206 6-211 (216)
35 PF02403 Seryl_tRNA_N: Seryl-t 88.9 4.2 9.2E-05 33.9 9.2 53 108-160 41-96 (108)
36 PF12329 TMF_DNA_bd: TATA elem 88.8 5.1 0.00011 32.2 9.2 68 95-162 4-71 (74)
37 PF10174 Cast: RIM-binding pro 88.6 19 0.00041 40.7 16.6 139 79-217 433-590 (775)
38 PF05701 WEMBL: Weak chloropla 88.2 40 0.00087 36.1 18.3 9 311-319 490-498 (522)
39 smart00787 Spc7 Spc7 kinetocho 87.9 33 0.0007 34.7 17.0 56 111-166 205-260 (312)
40 KOG0996 Structural maintenance 87.1 47 0.001 39.3 18.6 46 30-75 833-878 (1293)
41 PF08614 ATG16: Autophagy prot 86.8 8 0.00017 35.8 10.6 57 104-160 117-173 (194)
42 PF00038 Filament: Intermediat 86.4 34 0.00073 33.3 17.3 17 54-70 23-40 (312)
43 TIGR03185 DNA_S_dndD DNA sulfu 86.4 24 0.00053 38.4 15.6 41 123-163 427-467 (650)
44 PF05701 WEMBL: Weak chloropla 86.1 53 0.0011 35.2 22.9 147 8-154 4-160 (522)
45 PF00261 Tropomyosin: Tropomyo 86.0 33 0.00071 32.8 17.8 46 129-174 174-219 (237)
46 PF08614 ATG16: Autophagy prot 85.0 11 0.00023 34.9 10.5 72 90-161 89-160 (194)
47 PRK01156 chromosome segregatio 85.0 54 0.0012 36.9 17.8 17 55-71 149-165 (895)
48 KOG1962 B-cell receptor-associ 84.9 11 0.00024 36.4 10.7 63 102-164 150-212 (216)
49 PRK04863 mukB cell division pr 84.9 79 0.0017 38.5 19.8 23 169-191 417-441 (1486)
50 COG3883 Uncharacterized protei 84.9 10 0.00023 37.6 10.8 14 200-213 118-131 (265)
51 PRK10884 SH3 domain-containing 84.8 12 0.00026 35.6 10.9 35 128-162 129-163 (206)
52 PF07888 CALCOCO1: Calcium bin 84.8 66 0.0014 35.2 19.0 71 107-177 280-364 (546)
53 KOG0979 Structural maintenance 84.6 26 0.00057 40.6 15.0 128 53-181 220-354 (1072)
54 PF12128 DUF3584: Protein of u 84.3 95 0.0021 36.7 22.1 23 185-207 409-431 (1201)
55 PRK04863 mukB cell division pr 84.1 1.1E+02 0.0024 37.3 23.2 64 8-72 232-296 (1486)
56 PF05667 DUF812: Protein of un 84.0 73 0.0016 35.1 20.3 20 201-221 476-495 (594)
57 PF10473 CENP-F_leu_zip: Leuci 83.2 35 0.00076 30.9 17.7 125 57-203 2-133 (140)
58 KOG0161 Myosin class II heavy 82.8 99 0.0021 38.7 19.6 131 33-163 1571-1706(1930)
59 PF09304 Cortex-I_coil: Cortex 82.8 30 0.00066 30.1 11.5 80 91-177 11-90 (107)
60 COG4942 Membrane-bound metallo 82.8 18 0.0004 38.1 12.1 62 100-161 49-110 (420)
61 PF13949 ALIX_LYPXL_bnd: ALIX 82.6 47 0.001 31.9 17.3 41 137-177 240-280 (296)
62 PF06818 Fez1: Fez1; InterPro 82.5 47 0.001 31.9 14.5 38 143-180 136-173 (202)
63 COG4477 EzrA Negative regulato 82.0 34 0.00073 37.3 13.8 77 101-177 352-428 (570)
64 KOG0994 Extracellular matrix g 82.0 30 0.00064 41.1 14.0 95 31-131 1201-1295(1758)
65 PF10234 Cluap1: Clusterin-ass 81.8 32 0.00069 34.3 12.8 82 94-175 167-248 (267)
66 KOG0964 Structural maintenance 81.7 1.2E+02 0.0025 35.8 21.2 19 54-72 203-221 (1200)
67 KOG0933 Structural maintenance 81.4 1.2E+02 0.0026 35.7 21.2 102 104-205 788-894 (1174)
68 PF00038 Filament: Intermediat 80.3 60 0.0013 31.6 21.5 18 5-22 3-24 (312)
69 PF04111 APG6: Autophagy prote 79.7 34 0.00074 34.4 12.5 113 100-236 47-159 (314)
70 PF07888 CALCOCO1: Calcium bin 79.6 89 0.0019 34.2 16.2 52 118-169 411-462 (546)
71 KOG0994 Extracellular matrix g 79.5 47 0.001 39.5 14.6 78 87-164 1216-1293(1758)
72 PF13870 DUF4201: Domain of un 79.4 49 0.0011 30.0 14.8 27 188-214 141-167 (177)
73 PF12252 SidE: Dot/Icm substra 79.4 88 0.0019 37.0 16.5 107 7-118 1132-1252(1439)
74 PF12718 Tropomyosin_1: Tropom 79.2 40 0.00086 30.2 11.5 79 90-168 15-96 (143)
75 KOG1962 B-cell receptor-associ 79.1 21 0.00046 34.5 10.3 55 99-153 154-208 (216)
76 PF15070 GOLGA2L5: Putative go 79.0 1.1E+02 0.0023 34.0 16.9 55 131-185 223-277 (617)
77 PF07106 TBPIP: Tat binding pr 78.6 32 0.0007 31.0 10.9 54 104-164 73-128 (169)
78 COG3883 Uncharacterized protei 78.5 30 0.00065 34.5 11.4 14 206-222 113-126 (265)
79 PF10234 Cluap1: Clusterin-ass 78.4 76 0.0016 31.7 16.7 99 63-165 115-217 (267)
80 KOG0971 Microtubule-associated 78.2 1.3E+02 0.0029 35.1 17.3 88 141-229 493-599 (1243)
81 KOG1029 Endocytic adaptor prot 78.1 44 0.00095 38.2 13.5 84 43-130 377-464 (1118)
82 KOG0996 Structural maintenance 78.1 1.6E+02 0.0035 35.2 18.7 55 126-180 537-591 (1293)
83 PF10174 Cast: RIM-binding pro 78.0 1.3E+02 0.0029 34.2 20.9 69 111-179 302-370 (775)
84 KOG0977 Nuclear envelope prote 77.9 1.1E+02 0.0025 33.4 18.5 60 107-166 138-197 (546)
85 PF11932 DUF3450: Protein of u 76.9 72 0.0016 30.6 16.5 103 81-190 41-148 (251)
86 PHA01750 hypothetical protein 76.8 7.9 0.00017 31.2 5.6 49 84-132 22-71 (75)
87 COG4026 Uncharacterized protei 76.4 39 0.00085 33.3 11.3 60 104-163 143-202 (290)
88 COG4942 Membrane-bound metallo 76.4 1.1E+02 0.0024 32.5 16.3 73 65-140 38-110 (420)
89 PF03962 Mnd1: Mnd1 family; I 76.0 55 0.0012 30.6 11.9 59 110-169 69-127 (188)
90 KOG4302 Microtubule-associated 75.9 59 0.0013 36.3 13.8 103 29-131 30-138 (660)
91 KOG4673 Transcription factor T 75.7 1.5E+02 0.0033 33.7 19.3 75 91-165 404-487 (961)
92 KOG4673 Transcription factor T 75.6 1.5E+02 0.0033 33.7 23.0 190 30-233 401-627 (961)
93 PF04728 LPP: Lipoprotein leuc 75.5 26 0.00057 27.2 7.9 39 117-155 10-48 (56)
94 PF06160 EzrA: Septation ring 74.9 1.3E+02 0.0028 32.6 17.5 90 90-179 109-200 (560)
95 KOG4674 Uncharacterized conser 74.5 1.6E+02 0.0035 36.6 17.8 45 28-72 1185-1229(1822)
96 PF05531 NPV_P10: Nucleopolyhe 74.1 10 0.00023 31.0 5.8 48 97-144 12-62 (75)
97 PF04728 LPP: Lipoprotein leuc 73.7 18 0.00039 28.1 6.7 46 104-149 4-49 (56)
98 PF06005 DUF904: Protein of un 73.7 46 0.00099 26.8 9.5 30 131-160 39-68 (72)
99 PRK05431 seryl-tRNA synthetase 73.5 19 0.0004 37.6 9.0 26 135-160 70-95 (425)
100 KOG0933 Structural maintenance 73.4 2E+02 0.0043 34.0 18.9 125 53-177 209-347 (1174)
101 PF06818 Fez1: Fez1; InterPro 73.4 67 0.0015 30.9 11.9 76 97-172 25-100 (202)
102 TIGR02338 gimC_beta prefoldin, 72.6 17 0.00036 30.8 7.0 20 53-72 32-51 (110)
103 cd09238 V_Alix_like_1 Protein- 72.2 1.1E+02 0.0025 30.8 14.8 38 134-171 284-321 (339)
104 TIGR02680 conserved hypothetic 72.0 2.3E+02 0.0049 34.2 18.3 8 30-37 782-789 (1353)
105 COG4026 Uncharacterized protei 71.9 30 0.00064 34.1 9.2 88 108-206 133-220 (290)
106 PF04111 APG6: Autophagy prote 71.2 74 0.0016 32.0 12.4 11 59-69 47-57 (314)
107 KOG1029 Endocytic adaptor prot 71.0 2.1E+02 0.0044 33.2 16.4 48 24-74 437-484 (1118)
108 PF12128 DUF3584: Protein of u 71.0 2.3E+02 0.0049 33.6 20.7 116 92-207 624-743 (1201)
109 PF10146 zf-C4H2: Zinc finger- 70.8 1.1E+02 0.0023 29.8 13.5 51 115-165 51-101 (230)
110 TIGR02680 conserved hypothetic 70.5 2.5E+02 0.0053 33.9 20.5 51 133-183 342-392 (1353)
111 KOG0243 Kinesin-like protein [ 70.5 2.3E+02 0.0049 33.5 19.2 146 10-180 350-511 (1041)
112 PF07200 Mod_r: Modifier of ru 69.5 78 0.0017 27.7 14.5 19 198-219 126-144 (150)
113 TIGR02894 DNA_bind_RsfA transc 69.2 44 0.00096 31.0 9.4 15 58-72 57-71 (161)
114 PF15619 Lebercilin: Ciliary p 68.6 1.1E+02 0.0023 29.0 14.4 102 92-193 15-123 (194)
115 PF02403 Seryl_tRNA_N: Seryl-t 68.0 69 0.0015 26.5 10.6 58 66-123 6-63 (108)
116 PLN02320 seryl-tRNA synthetase 67.7 29 0.00063 37.4 9.0 56 63-119 68-123 (502)
117 PF09728 Taxilin: Myosin-like 66.0 1.5E+02 0.0033 29.8 16.1 61 106-166 212-272 (309)
118 PF04849 HAP1_N: HAP1 N-termin 66.0 1.6E+02 0.0035 30.0 18.8 82 97-178 221-302 (306)
119 PF04156 IncA: IncA protein; 65.4 1.1E+02 0.0023 27.8 15.0 12 127-138 133-144 (191)
120 PF10473 CENP-F_leu_zip: Leuci 64.8 1.1E+02 0.0024 27.7 11.9 61 105-165 26-86 (140)
121 cd00632 Prefoldin_beta Prefold 64.6 39 0.00085 28.2 7.6 15 55-69 30-44 (105)
122 KOG0239 Kinesin (KAR3 subfamil 64.3 1.3E+02 0.0029 33.6 13.5 54 119-172 243-296 (670)
123 PF11559 ADIP: Afadin- and alp 64.1 1E+02 0.0022 27.1 13.3 88 57-157 33-120 (151)
124 cd07653 F-BAR_CIP4-like The F- 63.8 1.3E+02 0.0029 28.3 19.0 25 209-233 192-216 (251)
125 PF03999 MAP65_ASE1: Microtubu 63.2 2.4 5.1E-05 46.1 -0.0 66 102-167 227-301 (619)
126 PF05667 DUF812: Protein of un 62.3 1.2E+02 0.0027 33.3 12.7 92 104-213 329-422 (594)
127 PF14197 Cep57_CLD_2: Centroso 62.1 80 0.0017 25.2 8.7 13 146-158 48-60 (69)
128 KOG2751 Beclin-like protein [S 61.8 1.7E+02 0.0037 31.3 13.0 41 120-160 228-268 (447)
129 PF05531 NPV_P10: Nucleopolyhe 61.5 43 0.00093 27.5 6.9 51 113-163 7-60 (75)
130 PF08826 DMPK_coil: DMPK coile 61.3 79 0.0017 24.9 8.9 36 108-143 23-58 (61)
131 PRK09343 prefoldin subunit bet 61.3 1.1E+02 0.0024 26.6 12.4 35 123-157 77-111 (121)
132 PRK09973 putative outer membra 61.2 83 0.0018 26.4 8.7 52 115-175 29-80 (85)
133 PF12329 TMF_DNA_bd: TATA elem 61.2 85 0.0018 25.2 8.6 54 122-175 3-56 (74)
134 PF00261 Tropomyosin: Tropomyo 61.0 1.6E+02 0.0034 28.2 17.1 67 99-165 123-189 (237)
135 PF15035 Rootletin: Ciliary ro 60.7 1.5E+02 0.0032 27.8 17.3 83 136-228 86-168 (182)
136 PF10168 Nup88: Nuclear pore c 60.6 2.9E+02 0.0063 31.2 17.9 40 59-98 576-616 (717)
137 KOG0239 Kinesin (KAR3 subfamil 60.1 2.9E+02 0.0063 31.0 16.5 57 114-170 224-280 (670)
138 TIGR02338 gimC_beta prefoldin, 60.0 1.1E+02 0.0023 25.9 12.4 36 64-99 9-44 (110)
139 cd08915 V_Alix_like Protein-in 59.7 1.9E+02 0.0042 28.8 17.6 41 134-174 287-327 (342)
140 PF09304 Cortex-I_coil: Cortex 59.5 1.2E+02 0.0027 26.5 11.9 56 105-160 32-87 (107)
141 TIGR03007 pepcterm_ChnLen poly 58.9 2.3E+02 0.005 29.5 18.6 25 46-70 188-212 (498)
142 TIGR00414 serS seryl-tRNA synt 58.8 75 0.0016 33.1 10.0 25 135-159 73-97 (418)
143 PF10481 CENP-F_N: Cenp-F N-te 58.7 2.1E+02 0.0046 29.0 15.7 101 59-162 15-126 (307)
144 PF05546 She9_MDM33: She9 / Md 58.3 88 0.0019 30.2 9.5 16 194-209 87-102 (207)
145 KOG0804 Cytoplasmic Zn-finger 57.9 2.2E+02 0.0048 30.7 13.1 97 104-212 362-458 (493)
146 PF03148 Tektin: Tektin family 57.5 2.4E+02 0.0051 29.1 14.6 56 64-121 235-290 (384)
147 KOG0288 WD40 repeat protein Ti 57.2 1.8E+02 0.004 31.0 12.3 79 143-226 88-169 (459)
148 PF09726 Macoilin: Transmembra 56.8 3.3E+02 0.0072 30.7 18.3 97 108-204 479-595 (697)
149 PLN02678 seryl-tRNA synthetase 56.0 68 0.0015 34.1 9.2 12 61-72 32-43 (448)
150 KOG4809 Rab6 GTPase-interactin 55.3 3.3E+02 0.0072 30.2 17.5 72 118-206 381-452 (654)
151 PHA03395 p10 fibrous body prot 54.7 36 0.00077 28.7 5.5 45 97-141 12-59 (87)
152 PF06005 DUF904: Protein of un 54.5 1.1E+02 0.0025 24.6 10.0 46 109-154 24-69 (72)
153 PF07889 DUF1664: Protein of u 54.0 1.1E+02 0.0024 27.2 8.9 47 103-149 68-114 (126)
154 cd07657 F-BAR_Fes_Fer The F-BA 53.9 2.1E+02 0.0047 27.6 16.1 85 58-154 68-156 (237)
155 cd09234 V_HD-PTP_like Protein- 53.1 2.5E+02 0.0055 28.2 16.9 52 121-172 269-320 (337)
156 PF05377 FlaC_arch: Flagella a 52.5 52 0.0011 25.5 5.7 25 123-147 6-30 (55)
157 PF10805 DUF2730: Protein of u 52.5 1.2E+02 0.0025 25.8 8.5 58 102-159 34-93 (106)
158 COG3352 FlaC Putative archaeal 52.4 1.8E+02 0.0039 27.0 10.1 47 97-143 59-105 (157)
159 PF02183 HALZ: Homeobox associ 52.0 65 0.0014 23.7 6.0 38 122-159 3-40 (45)
160 PF03993 DUF349: Domain of Unk 51.8 1.1E+02 0.0023 23.5 8.8 57 147-207 11-68 (77)
161 KOG1655 Protein involved in va 51.6 2.2E+02 0.0048 27.6 10.9 61 10-74 16-82 (218)
162 TIGR00634 recN DNA repair prot 50.9 3.5E+02 0.0075 29.1 20.3 42 33-74 184-228 (563)
163 PF08172 CASP_C: CASP C termin 50.8 80 0.0017 31.0 8.2 54 105-158 81-134 (248)
164 PF10392 COG5: Golgi transport 50.1 1.7E+02 0.0038 25.4 11.6 74 93-166 30-114 (132)
165 COG2433 Uncharacterized conser 50.0 4.2E+02 0.009 29.8 15.0 45 132-187 475-519 (652)
166 KOG0804 Cytoplasmic Zn-finger 50.0 3.7E+02 0.008 29.1 15.4 28 110-137 375-402 (493)
167 PF05529 Bap31: B-cell recepto 49.9 1.1E+02 0.0023 28.2 8.5 12 126-137 177-188 (192)
168 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.6 1.8E+02 0.0039 25.4 14.8 9 136-144 64-72 (132)
169 cd00632 Prefoldin_beta Prefold 49.2 1.6E+02 0.0034 24.6 12.2 38 64-101 5-42 (105)
170 PRK10884 SH3 domain-containing 49.1 1.8E+02 0.004 27.7 10.1 31 129-159 137-167 (206)
171 PRK09973 putative outer membra 48.5 1.4E+02 0.0031 25.1 8.1 55 104-158 25-81 (85)
172 PF12958 DUF3847: Protein of u 48.5 1.6E+02 0.0035 24.6 10.1 27 189-215 59-85 (86)
173 PRK15396 murein lipoprotein; P 48.4 1.2E+02 0.0025 25.1 7.5 32 124-155 39-70 (78)
174 PF10211 Ax_dynein_light: Axon 48.4 2.3E+02 0.0051 26.4 18.1 34 4-37 31-64 (189)
175 PF03962 Mnd1: Mnd1 family; I 48.3 1.1E+02 0.0024 28.6 8.4 96 100-196 66-167 (188)
176 PRK05431 seryl-tRNA synthetase 48.2 1.1E+02 0.0024 32.0 9.2 19 102-120 41-59 (425)
177 cd07665 BAR_SNX1 The Bin/Amphi 48.2 2.7E+02 0.0059 27.1 21.9 159 35-213 26-206 (234)
178 PRK11546 zraP zinc resistance 48.2 1.5E+02 0.0032 27.1 8.8 18 125-142 90-107 (143)
179 PF07795 DUF1635: Protein of u 47.6 1.1E+02 0.0024 29.6 8.4 38 122-159 24-61 (214)
180 PF06810 Phage_GP20: Phage min 47.4 1.7E+02 0.0038 26.5 9.3 12 228-240 113-124 (155)
181 PRK13729 conjugal transfer pil 47.2 45 0.00098 35.8 6.2 16 146-161 105-120 (475)
182 PF04949 Transcrip_act: Transc 47.1 2.4E+02 0.0052 26.2 12.7 33 133-165 93-125 (159)
183 PF14662 CCDC155: Coiled-coil 47.0 2.7E+02 0.0058 26.7 19.2 63 118-180 89-151 (193)
184 PF07862 Nif11: Nitrogen fixat 46.5 22 0.00047 25.8 2.7 44 195-238 3-46 (49)
185 PF03904 DUF334: Domain of unk 46.4 3E+02 0.0065 27.1 13.2 17 63-79 44-60 (230)
186 PF12325 TMF_TATA_bd: TATA ele 46.4 2.1E+02 0.0045 25.2 13.3 43 126-168 70-112 (120)
187 cd07664 BAR_SNX2 The Bin/Amphi 46.3 2.9E+02 0.0062 26.8 21.7 48 34-91 25-72 (234)
188 PTZ00464 SNF-7-like protein; P 46.0 2.8E+02 0.0061 26.6 11.9 12 36-47 23-34 (211)
189 PRK09343 prefoldin subunit bet 45.5 1.3E+02 0.0028 26.2 7.8 38 107-144 75-112 (121)
190 PF04645 DUF603: Protein of un 44.8 1.6E+02 0.0034 27.9 8.6 70 102-184 104-178 (181)
191 PF05278 PEARLI-4: Arabidopsis 44.5 3.4E+02 0.0075 27.2 12.3 55 104-158 201-255 (269)
192 PF05529 Bap31: B-cell recepto 44.4 1.7E+02 0.0037 26.8 8.9 37 132-168 155-191 (192)
193 PF09789 DUF2353: Uncharacteri 44.2 3.7E+02 0.0081 27.6 14.0 41 126-166 135-175 (319)
194 PF05278 PEARLI-4: Arabidopsis 43.8 3.5E+02 0.0077 27.2 14.5 13 58-70 152-164 (269)
195 PRK11281 hypothetical protein; 43.8 5E+02 0.011 31.0 14.4 146 32-185 37-182 (1113)
196 PF15397 DUF4618: Domain of un 43.6 3.5E+02 0.0075 27.0 17.7 57 104-160 82-149 (258)
197 PF04949 Transcrip_act: Transc 43.1 2.8E+02 0.0061 25.8 16.3 28 108-135 82-109 (159)
198 TIGR03752 conj_TIGR03752 integ 43.0 3E+02 0.0065 29.8 11.5 22 136-157 114-135 (472)
199 cd09235 V_Alix Middle V-domain 42.9 3.7E+02 0.008 27.1 16.0 113 58-175 194-325 (339)
200 KOG2264 Exostosin EXT1L [Signa 42.9 2E+02 0.0044 32.1 10.3 57 104-160 94-150 (907)
201 PF06008 Laminin_I: Laminin Do 42.6 3.2E+02 0.0069 26.3 17.9 24 29-52 92-115 (264)
202 PRK11546 zraP zinc resistance 42.5 89 0.0019 28.5 6.6 47 119-165 63-109 (143)
203 TIGR00414 serS seryl-tRNA synt 42.3 2E+02 0.0043 30.1 10.0 19 64-82 4-22 (418)
204 PF11932 DUF3450: Protein of u 42.0 3.2E+02 0.0069 26.2 13.2 57 92-148 38-94 (251)
205 COG4477 EzrA Negative regulato 41.9 3.7E+02 0.0081 29.7 12.0 211 10-232 44-278 (570)
206 KOG0243 Kinesin-like protein [ 41.9 6.7E+02 0.015 29.8 15.3 134 98-231 406-559 (1041)
207 KOG0976 Rho/Rac1-interacting s 41.8 6.4E+02 0.014 29.6 18.7 122 90-213 317-455 (1265)
208 PRK15396 murein lipoprotein; P 41.4 1.3E+02 0.0028 24.8 6.7 45 105-149 27-71 (78)
209 PF06009 Laminin_II: Laminin D 41.0 9 0.00019 33.8 0.0 24 164-187 88-111 (138)
210 PF10168 Nup88: Nuclear pore c 40.8 5.4E+02 0.012 29.1 13.6 63 91-160 560-622 (717)
211 PLN02678 seryl-tRNA synthetase 40.3 1.6E+02 0.0035 31.3 9.0 63 100-162 37-102 (448)
212 PF15619 Lebercilin: Ciliary p 40.0 3.3E+02 0.0071 25.7 19.9 128 36-169 17-156 (194)
213 cd00179 SynN Syntaxin N-termin 40.0 2.4E+02 0.0053 24.2 13.7 26 151-176 87-112 (151)
214 PHA03395 p10 fibrous body prot 39.8 1.4E+02 0.0031 25.2 6.8 42 113-154 7-51 (87)
215 PF10187 Nefa_Nip30_N: N-termi 39.2 57 0.0012 27.8 4.6 54 132-185 36-92 (102)
216 PF12711 Kinesin-relat_1: Kine 39.0 2E+02 0.0044 24.2 7.6 34 37-70 2-39 (86)
217 PF06103 DUF948: Bacterial pro 39.0 2.1E+02 0.0044 23.1 9.0 23 135-157 58-80 (90)
218 PF15456 Uds1: Up-regulated Du 38.7 2.8E+02 0.0061 24.5 10.5 76 103-179 22-108 (124)
219 PF12777 MT: Microtubule-bindi 38.5 1E+02 0.0022 31.1 7.1 69 98-166 216-284 (344)
220 PF06657 Cep57_MT_bd: Centroso 38.2 2.2E+02 0.0048 23.2 8.1 24 146-169 51-74 (79)
221 COG0419 SbcC ATPase involved i 38.1 6.6E+02 0.014 28.7 24.6 7 237-243 456-462 (908)
222 smart00503 SynN Syntaxin N-ter 38.1 2.2E+02 0.0048 23.2 11.7 20 154-173 91-110 (117)
223 smart00030 CLb CLUSTERIN Beta 37.6 3.9E+02 0.0085 25.9 12.1 70 127-233 39-108 (206)
224 COG4372 Uncharacterized protei 37.5 5.5E+02 0.012 27.6 16.1 118 64-184 73-197 (499)
225 PF15188 CCDC-167: Coiled-coil 37.4 1.9E+02 0.0041 24.2 7.2 57 104-160 6-65 (85)
226 PF15233 SYCE1: Synaptonemal c 37.1 3.2E+02 0.007 24.8 13.5 16 59-74 10-25 (134)
227 PF10498 IFT57: Intra-flagella 37.0 4.9E+02 0.011 26.9 12.5 92 65-156 220-319 (359)
228 cd00179 SynN Syntaxin N-termin 36.7 2.7E+02 0.0059 23.9 13.0 48 188-240 84-131 (151)
229 PF09766 FimP: Fms-interacting 36.7 1.9E+02 0.0041 29.6 8.6 126 4-140 24-152 (355)
230 TIGR02231 conserved hypothetic 36.7 3.7E+02 0.008 28.6 11.1 34 129-162 136-169 (525)
231 PRK03947 prefoldin subunit alp 36.6 2.8E+02 0.0062 24.0 11.1 31 127-157 104-134 (140)
232 PF07889 DUF1664: Protein of u 36.1 3.2E+02 0.0068 24.4 11.1 9 98-106 70-78 (126)
233 KOG4603 TBP-1 interacting prot 36.0 4E+02 0.0086 25.5 11.4 57 103-159 86-144 (201)
234 KOG4674 Uncharacterized conser 35.8 1E+03 0.022 30.2 21.6 185 53-240 1305-1521(1822)
235 TIGR03752 conj_TIGR03752 integ 35.5 2.9E+02 0.0063 29.9 10.0 33 119-151 75-107 (472)
236 PRK09239 chorismate mutase; Pr 35.5 1.7E+02 0.0037 24.9 6.9 33 128-160 14-46 (104)
237 PF02344 Myc-LZ: Myc leucine z 35.4 58 0.0013 22.7 3.2 21 55-75 1-21 (32)
238 KOG0018 Structural maintenance 35.3 6.7E+02 0.014 30.0 13.3 59 108-166 695-753 (1141)
239 KOG0995 Centromere-associated 35.1 6.7E+02 0.015 27.9 18.8 80 102-181 307-393 (581)
240 PF13166 AAA_13: AAA domain 35.1 6.2E+02 0.014 27.5 14.3 14 33-46 324-337 (712)
241 COG2433 Uncharacterized conser 34.9 5.9E+02 0.013 28.7 12.3 8 41-48 362-369 (652)
242 PRK11519 tyrosine kinase; Prov 34.8 6.2E+02 0.013 28.2 12.9 27 44-70 292-319 (719)
243 PRK09841 cryptic autophosphory 34.8 5.6E+02 0.012 28.6 12.5 30 44-73 292-322 (726)
244 COG4913 Uncharacterized protei 34.7 3.5E+02 0.0075 31.3 10.7 101 104-206 617-726 (1104)
245 PF06156 DUF972: Protein of un 34.5 2.2E+02 0.0047 24.6 7.4 9 150-158 74-82 (107)
246 PF05384 DegS: Sensor protein 34.1 3.8E+02 0.0083 24.7 15.2 81 103-183 27-129 (159)
247 PRK10698 phage shock protein P 34.0 4.3E+02 0.0093 25.3 14.1 15 35-49 28-42 (222)
248 PF10481 CENP-F_N: Cenp-F N-te 33.7 5.3E+02 0.012 26.3 13.5 65 53-130 64-129 (307)
249 PHA03386 P10 fibrous body prot 33.5 1.3E+02 0.0028 25.7 5.7 17 100-116 16-32 (94)
250 TIGR02231 conserved hypothetic 32.8 3.6E+02 0.0077 28.7 10.3 15 202-216 198-212 (525)
251 COG5185 HEC1 Protein involved 32.7 7.1E+02 0.015 27.4 16.4 82 77-169 318-399 (622)
252 PF03961 DUF342: Protein of un 32.6 3.3E+02 0.0071 28.4 9.9 27 108-134 332-358 (451)
253 TIGR03545 conserved hypothetic 32.4 4.3E+02 0.0094 28.9 11.0 21 191-217 283-303 (555)
254 PRK10636 putative ABC transpor 32.2 1.9E+02 0.0041 31.6 8.3 61 105-165 565-632 (638)
255 cd09236 V_AnPalA_UmRIM20_like 31.4 5.7E+02 0.012 25.9 19.7 38 134-171 298-335 (353)
256 PHA03332 membrane glycoprotein 31.4 9.8E+02 0.021 28.9 13.7 35 123-160 929-963 (1328)
257 PF14942 Muted: Organelle biog 31.4 4E+02 0.0087 24.2 13.9 21 56-76 31-51 (145)
258 cd07686 F-BAR_Fer The F-BAR (F 30.7 5.2E+02 0.011 25.3 18.2 136 58-205 68-222 (234)
259 TIGR02894 DNA_bind_RsfA transc 30.5 4.6E+02 0.0099 24.5 9.5 51 132-182 105-155 (161)
260 PLN02320 seryl-tRNA synthetase 30.2 3.4E+02 0.0073 29.5 9.6 19 58-76 103-121 (502)
261 PF13851 GAS: Growth-arrest sp 29.9 4.8E+02 0.01 24.6 16.4 41 112-152 88-128 (201)
262 PF05082 Rop-like: Rop-like; 29.8 1.6E+02 0.0036 23.6 5.5 61 105-165 4-64 (66)
263 PRK10869 recombination and rep 29.8 7.5E+02 0.016 26.8 14.0 133 64-196 243-385 (553)
264 PF04136 Sec34: Sec34-like fam 29.5 4.3E+02 0.0093 23.9 11.2 100 111-213 15-119 (157)
265 cd07666 BAR_SNX7 The Bin/Amphi 29.4 5.6E+02 0.012 25.2 15.2 87 33-124 105-191 (243)
266 PF06657 Cep57_MT_bd: Centroso 29.4 2.8E+02 0.0061 22.6 6.9 71 87-159 8-78 (79)
267 COG0172 SerS Seryl-tRNA synthe 29.1 3.1E+02 0.0067 29.3 8.9 27 134-160 71-97 (429)
268 cd07664 BAR_SNX2 The Bin/Amphi 29.0 5.4E+02 0.012 24.9 17.0 95 1-98 24-135 (234)
269 PF04859 DUF641: Plant protein 28.6 2E+02 0.0042 25.9 6.4 50 98-147 75-124 (131)
270 PF04420 CHD5: CHD5-like prote 28.5 1.7E+02 0.0036 26.6 6.1 25 144-168 72-96 (161)
271 PF13747 DUF4164: Domain of un 28.2 3.5E+02 0.0076 22.5 11.0 34 122-155 51-84 (89)
272 PF09763 Sec3_C: Exocyst compl 28.0 4.5E+02 0.0097 29.1 10.4 17 35-51 9-25 (701)
273 PF06717 DUF1202: Protein of u 28.0 2.3E+02 0.0049 28.9 7.3 38 116-153 137-174 (308)
274 cd09237 V_ScBro1_like Protein- 28.0 6.4E+02 0.014 25.5 15.2 37 133-170 300-336 (356)
275 PHA03011 hypothetical protein; 27.7 4.2E+02 0.0091 23.3 8.4 59 101-166 55-113 (120)
276 KOG0971 Microtubule-associated 27.3 1.1E+03 0.024 28.1 15.1 124 30-164 223-358 (1243)
277 PF06705 SF-assemblin: SF-asse 27.2 5.6E+02 0.012 24.5 20.7 119 25-151 28-148 (247)
278 TIGR01005 eps_transp_fam exopo 27.1 8.9E+02 0.019 26.8 17.1 42 105-146 290-331 (754)
279 PF06717 DUF1202: Protein of u 27.0 1.9E+02 0.0042 29.4 6.6 36 107-142 142-177 (308)
280 TIGR01010 BexC_CtrB_KpsE polys 26.7 6.6E+02 0.014 25.1 13.1 26 45-70 196-222 (362)
281 PF12238 MSA-2c: Merozoite sur 26.7 5.9E+02 0.013 24.6 12.4 84 125-222 49-132 (205)
282 PF05377 FlaC_arch: Flagella a 26.6 1.8E+02 0.0039 22.6 5.0 15 105-119 16-30 (55)
283 PRK14160 heat shock protein Gr 26.3 4.6E+02 0.01 25.3 8.9 23 155-177 78-100 (211)
284 KOG4809 Rab6 GTPase-interactin 25.9 9.7E+02 0.021 26.8 12.3 11 62-72 313-323 (654)
285 PF01576 Myosin_tail_1: Myosin 25.7 23 0.0005 40.3 0.0 178 1-184 509-697 (859)
286 PRK15422 septal ring assembly 25.6 4E+02 0.0086 22.2 8.9 72 77-148 6-77 (79)
287 KOG0979 Structural maintenance 25.4 1.2E+03 0.026 27.8 19.3 65 96-160 283-347 (1072)
288 PF09730 BicD: Microtubule-ass 25.1 1.1E+03 0.023 27.0 17.5 23 197-219 458-482 (717)
289 PRK03947 prefoldin subunit alp 25.1 4.5E+02 0.0098 22.7 12.3 37 115-151 99-135 (140)
290 PHA03011 hypothetical protein; 25.1 4.7E+02 0.01 23.0 8.3 30 92-121 60-89 (120)
291 PF10212 TTKRSYEDQ: Predicted 25.0 9.5E+02 0.021 26.4 13.4 54 105-158 457-514 (518)
292 PF04420 CHD5: CHD5-like prote 24.8 67 0.0015 29.2 2.8 24 51-74 36-59 (161)
293 PF11180 DUF2968: Protein of u 24.8 6.3E+02 0.014 24.3 9.8 52 115-166 117-168 (192)
294 PF05055 DUF677: Protein of un 24.6 7.8E+02 0.017 25.3 11.5 86 98-183 245-333 (336)
295 PF07200 Mod_r: Modifier of ru 24.3 4.8E+02 0.01 22.7 12.7 41 186-226 104-144 (150)
296 cd07651 F-BAR_PombeCdc15_like 24.3 6.1E+02 0.013 23.9 19.1 32 193-224 186-217 (236)
297 TIGR03017 EpsF chain length de 23.8 7.9E+02 0.017 25.0 16.2 18 106-123 257-274 (444)
298 TIGR02492 flgK_ends flagellar 23.6 5.4E+02 0.012 25.7 9.2 6 238-243 229-234 (322)
299 PF15030 DUF4527: Protein of u 23.5 7.6E+02 0.017 24.8 11.1 64 30-116 8-71 (277)
300 TIGR01843 type_I_hlyD type I s 23.5 7.3E+02 0.016 24.6 18.4 9 231-239 290-298 (423)
301 KOG3809 Microtubule-binding pr 23.5 3.3E+02 0.0071 29.6 7.8 41 5-45 478-518 (583)
302 PF12718 Tropomyosin_1: Tropom 23.4 5.4E+02 0.012 23.0 15.7 27 129-155 78-104 (143)
303 PF12795 MscS_porin: Mechanose 23.0 6.6E+02 0.014 23.8 18.2 58 7-64 53-111 (240)
304 PRK10803 tol-pal system protei 22.8 4.5E+02 0.0098 25.7 8.3 43 116-158 60-102 (263)
305 cd07623 BAR_SNX1_2 The Bin/Amp 22.8 6.6E+02 0.014 23.8 15.8 183 1-205 14-216 (224)
306 PF04782 DUF632: Protein of un 22.7 8.2E+02 0.018 24.9 19.5 154 54-228 91-255 (312)
307 COG1842 PspA Phage shock prote 22.7 7.1E+02 0.015 24.1 12.9 95 54-148 51-151 (225)
308 PF12795 MscS_porin: Mechanose 22.6 6.7E+02 0.014 23.8 16.9 16 4-19 16-31 (240)
309 KOG3647 Predicted coiled-coil 22.0 8.7E+02 0.019 24.9 15.8 133 64-204 59-191 (338)
310 PF15290 Syntaphilin: Golgi-lo 21.9 5.9E+02 0.013 26.0 8.9 16 101-116 87-102 (305)
311 PF03670 UPF0184: Uncharacteri 21.7 4.9E+02 0.011 21.9 7.2 33 129-161 38-70 (83)
312 TIGR03545 conserved hypothetic 21.6 1.1E+03 0.024 25.9 13.5 50 104-156 220-269 (555)
313 PF15079 DUF4546: Domain of un 21.2 5.4E+02 0.012 24.5 8.0 59 105-170 49-107 (205)
314 PF12729 4HB_MCP_1: Four helix 21.2 4.8E+02 0.01 21.6 15.0 67 133-199 77-149 (181)
315 PF13514 AAA_27: AAA domain 21.1 1.4E+03 0.03 26.9 20.0 12 232-243 999-1010(1111)
316 PF13166 AAA_13: AAA domain 21.1 1.1E+03 0.024 25.7 17.3 32 113-144 366-397 (712)
317 TIGR01554 major_cap_HK97 phage 20.8 5.6E+02 0.012 25.8 8.8 16 132-147 35-50 (378)
318 PF03961 DUF342: Protein of un 20.7 5.6E+02 0.012 26.7 9.0 11 60-70 332-342 (451)
319 PF03194 LUC7: LUC7 N_terminus 20.6 7.9E+02 0.017 24.1 9.5 81 112-205 85-165 (254)
320 KOG4643 Uncharacterized coiled 20.5 1.5E+03 0.033 27.2 19.6 82 57-148 438-519 (1195)
321 PF08581 Tup_N: Tup N-terminal 20.4 4.9E+02 0.011 21.4 9.2 11 152-162 64-74 (79)
322 PF08647 BRE1: BRE1 E3 ubiquit 20.3 5.1E+02 0.011 21.5 11.7 34 127-160 34-67 (96)
323 KOG1850 Myosin-like coiled-coi 20.1 1E+03 0.022 25.0 15.8 37 26-62 16-52 (391)
324 smart00806 AIP3 Actin interact 20.0 8.7E+02 0.019 26.0 10.1 9 171-179 308-316 (426)
No 1
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.83 E-value=5.1e-07 Score=88.91 Aligned_cols=150 Identities=22% Similarity=0.335 Sum_probs=123.6
Q ss_pred hhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHH
Q 017105 16 GKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQ 95 (377)
Q Consensus 16 ~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iq 95 (377)
+.++...+... +.-.|...|...|..|++.+++..+|+.+|++++..|++|++.-..+-. .+.. .
T Consensus 93 ~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k----------~~e~----~ 157 (294)
T COG1340 93 RELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK----------ALEE----N 157 (294)
T ss_pred HHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH----------HHHH----H
Confidence 45665555433 4568999999999999999999999999999999999999888664422 2222 2
Q ss_pred HHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 017105 96 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 175 (377)
Q Consensus 96 eqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~ 175 (377)
+.++.+-+++++++++...+...|..+.+....+..++..+..+.+.++...|.+.+.+..++...++.+..|-+....+
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555667789999999999999999999999999999999999999999999999999999999888888888777777
Q ss_pred HHHHH
Q 017105 176 NEAKA 180 (377)
Q Consensus 176 ~kare 180 (377)
+....
T Consensus 238 re~~k 242 (294)
T COG1340 238 RELEK 242 (294)
T ss_pred HHHHH
Confidence 66554
No 2
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.82 E-value=0.13 Score=54.99 Aligned_cols=94 Identities=23% Similarity=0.387 Sum_probs=59.7
Q ss_pred HhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 017105 99 KLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 178 (377)
Q Consensus 99 K~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ka 178 (377)
..+..+|..|.+....+...++.....++.+...+..+.+++..+...+.+..+.+..||+.-.+.....-.++..+...
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444445555666777778888888888888888888888887777766666666666666
Q ss_pred HHHHhccCHHHHHH
Q 017105 179 KAMSVKKDVQGLKE 192 (377)
Q Consensus 179 rela~~~~v~~l~~ 192 (377)
+.+..+.++.++.+
T Consensus 431 kr~l~k~~lpgip~ 444 (569)
T PRK04778 431 KRYLEKSNLPGLPE 444 (569)
T ss_pred HHHHHHcCCCCCcH
Confidence 66555555554433
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.09 E-value=0.6 Score=54.62 Aligned_cols=144 Identities=10% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcC---chHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccc
Q 017105 29 ICSSEEELDDLIRSLQYRIQHEIIP---LSEE-KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSD 104 (377)
Q Consensus 29 ~~~S~eeiD~~I~~Le~~i~h~sm~---L~EE-Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~e 104 (377)
...|+++|...|..++..+..-+-. +.++ .+.-.+|+.|+.. +....+.+.++...+..+..+..++..+
T Consensus 820 ~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~k---i~el~~~klkl~~~l~~r~~le~~L~el--- 893 (1311)
T TIGR00606 820 LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK---TNELKSEKLQIGTNLQRRQQFEEQLVEL--- 893 (1311)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3458999999999998888764332 2333 4455666666554 4445566666677666666666666554
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 184 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~ 184 (377)
..++..++..|..+...+.-+...+..++.++..+....+..+ ..++.+++..+..+-+.........+|...
T Consensus 894 ----~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~ 966 (1311)
T TIGR00606 894 ----STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN---KKAQDKVNDIKEKVKNIHGYMKDIENKIQD 966 (1311)
T ss_pred ----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444555555555545555555555555555555444444333 223333333333344444444444444444
Q ss_pred c
Q 017105 185 K 185 (377)
Q Consensus 185 ~ 185 (377)
|
T Consensus 967 ~ 967 (1311)
T TIGR00606 967 G 967 (1311)
T ss_pred C
Confidence 4
No 4
>PRK11637 AmiB activator; Provisional
Probab=95.85 E-value=0.27 Score=50.56 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=35.6
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR 172 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r 172 (377)
++.+..++..+...|..+..++..+..+|..+..++..+...+..+-..|..+++.+.....++|.+-
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g 137 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444444444445555555555555555555555555555555555555555555555543
No 5
>PRK03918 chromosome segregation protein; Provisional
Probab=95.50 E-value=3.5 Score=45.55 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=11.7
Q ss_pred hHHHHHHhhccchhhhHHhHHHHHHHHHhHH
Q 017105 93 DIQDQVKLMGSDLDGVKKESQAVWAKISHLE 123 (377)
Q Consensus 93 ~iqeqiK~~~~eLD~LKKE~dalr~kik~le 123 (377)
.+...+..+...|+.++.++..++..|..+.
T Consensus 616 ~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~ 646 (880)
T PRK03918 616 REEKELKKLEEELDKAFEELAETEKRLEELR 646 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334434433333333333333
No 6
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.45 E-value=1.4 Score=43.06 Aligned_cols=125 Identities=20% Similarity=0.314 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhcCcCchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHH
Q 017105 35 ELDDLIRSLQYRIQHEIIPLSEE-KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQ 113 (377)
Q Consensus 35 eiD~~I~~Le~~i~h~sm~L~EE-Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~d 113 (377)
.||..+.+|++++. +..++ +++-.|+..+++. +.+.--..+.+..++..+..+|+.++..++
T Consensus 14 ~lD~e~~rl~~~~~----~~~~~l~k~~~e~e~~~~~-------------~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 14 KLDLEKDRLEPRIK----EIRKALKKAKAELEALNKA-------------LEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888877765 33322 3344444443333 222233455566777776666666666666
Q ss_pred HHHHHHHhH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 017105 114 AVWAKISHL--EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 176 (377)
Q Consensus 114 alr~kik~l--edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ 176 (377)
..+.++..+ ...+.+++-++..+..+...+......+...+..|.++........-.-++.+.
T Consensus 77 ~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 77 RAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665444 234455555555555555555555555555555555555555444333333333
No 7
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.40 E-value=1.4 Score=44.24 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=59.7
Q ss_pred HhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 017105 110 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180 (377)
Q Consensus 110 KE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kare 180 (377)
.++..+.+.++.+.++...+...|..|..+..++....-.+|..++.+|+..|+.+..|-+++..+....+
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~e 228 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHE 228 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44445556666666777888889999999999999999999999999999999999999999888877665
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=95.00 E-value=6.2 Score=43.70 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=2.3
Q ss_pred HHHHHH
Q 017105 196 SEVEKY 201 (377)
Q Consensus 196 ~eVe~f 201 (377)
.+++.|
T Consensus 743 ~~l~~~ 748 (880)
T PRK03918 743 SKVGEI 748 (880)
T ss_pred HHHHHH
Confidence 333333
No 9
>PRK11637 AmiB activator; Provisional
Probab=94.90 E-value=0.64 Score=47.78 Aligned_cols=73 Identities=12% Similarity=0.232 Sum_probs=40.0
Q ss_pred HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 017105 97 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 169 (377)
Q Consensus 97 qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fy 169 (377)
+++.+..+|..++.++..+...|..+..++..+...|..+..++..+....+..-..|..+..+++.....|-
T Consensus 55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555555555555555555555555555555555554443
No 10
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.72 E-value=7.6 Score=42.10 Aligned_cols=187 Identities=17% Similarity=0.272 Sum_probs=98.3
Q ss_pred hhhhhHHHHHH----hhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCc--------CchHHHHHHHHHHH------
Q 017105 5 RKEMEPLHQAL----GKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--------PLSEEKQILREIKQ------ 66 (377)
Q Consensus 5 ~~Em~~lq~aL----~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm--------~L~EEKk~L~EI~~------ 66 (377)
++||-.|.+.| .|+|.+.+--+ -|...|.-|.....+++= .|..=+++|.++..
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~--------~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e 112 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNR--------KLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLE 112 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46788888887 58887654211 344447777777666532 23333555555521
Q ss_pred --HHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 017105 67 --LEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA 144 (377)
Q Consensus 67 --L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~ 144 (377)
+.+.++.+..+..+. ..+........+.++....-|..+..++.-+...++.+++.+.-++.+...|..++..+.
T Consensus 113 ~ei~kl~~e~~elr~~~---~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 113 IEITKLREELKELRKKL---EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHhHHHHHHHHHHH---HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 222223233322222 223223333334444444456667777777777777777777777777666666666666
Q ss_pred HHHHHHH-------HHHHHHHHH--------------------Hh--hhhHHHHHHH-----HHHHHHHHHHhccCHHHH
Q 017105 145 EKRDKAF-------ANIKELRKQ--------------------RD--EGNAYFFQYR-----ALLNEAKAMSVKKDVQGL 190 (377)
Q Consensus 145 e~rd~Ay-------e~i~~LRkq--------------------~d--E~n~~fyq~r-----~~~~karela~~~~v~~l 190 (377)
...|..- ..++.|..+ +| ..+..||.+. ++++..=+--...+..++
T Consensus 190 ~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~di 269 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDI 269 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5444433 222222222 11 1344555543 344444444445566677
Q ss_pred HHHHHHHHHHHH
Q 017105 191 KELSNSEVEKYM 202 (377)
Q Consensus 191 ~~~~~~eVe~fm 202 (377)
+..+...+...-
T Consensus 270 E~~Y~~kI~~i~ 281 (546)
T KOG0977|consen 270 ESWYKRKIQEIR 281 (546)
T ss_pred HHHHHHHHHHHH
Confidence 777777666654
No 11
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.63 E-value=5.8 Score=42.68 Aligned_cols=92 Identities=18% Similarity=0.353 Sum_probs=64.1
Q ss_pred HhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 017105 99 KLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 178 (377)
Q Consensus 99 K~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ka 178 (377)
+.+...|..|.+..+.+...+..-.--++.+...+..+...+..+........+.+..||+.-.........++..++..
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555544444444556677788888888888888888888888888888777777777777777777
Q ss_pred HHHHhccCHHHH
Q 017105 179 KAMSVKKDVQGL 190 (377)
Q Consensus 179 rela~~~~v~~l 190 (377)
+....+-++-+|
T Consensus 427 kR~lek~nLPGl 438 (560)
T PF06160_consen 427 KRRLEKSNLPGL 438 (560)
T ss_pred HHHHHHcCCCCC
Confidence 777777666544
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.48 E-value=4.9 Score=46.74 Aligned_cols=101 Identities=15% Similarity=0.295 Sum_probs=46.7
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 183 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~ 183 (377)
++......++.+...|..+..++..+...+..|...+..+..........+..++.++...+..+-.++........-.
T Consensus 815 ~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l- 893 (1163)
T COG1196 815 ELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL- 893 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333333334444444444444444444444455555555555555555555555555555554444444333332211
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHh
Q 017105 184 KKDVQGLKELSNSEVEKYMTLWN 206 (377)
Q Consensus 184 ~~~v~~l~~~~~~eVe~fm~lwn 206 (377)
..+..-..-|..+++++.+.||
T Consensus 894 -~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 894 -RELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333445566666666664
No 13
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.24 E-value=14 Score=42.87 Aligned_cols=201 Identities=17% Similarity=0.293 Sum_probs=120.1
Q ss_pred hhhhhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCch----HHHHHHHHHHHHHHhHHHH------
Q 017105 5 RKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLS----EEKQILREIKQLEGTREKV------ 74 (377)
Q Consensus 5 ~~Em~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~----EEKk~L~EI~~L~~~R~~V------ 74 (377)
..++.-||.+|..+|. -++++|..|..+-.+|+.-..... +=..+..|+..+++.+-.|
T Consensus 677 ~~~~~~l~~~L~~~r~-----------~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~ 745 (1200)
T KOG0964|consen 677 RSELKELQESLDEVRN-----------EIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEP 745 (1200)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH
Confidence 4567788888888762 367888888888777765544322 1233333333333333322
Q ss_pred ---------------HHHHHHHH-HHHhhhhhh--hhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHH-----
Q 017105 75 ---------------MANAAMRA-KIQESMGKK--EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE----- 131 (377)
Q Consensus 75 ---------------~anaa~~~-ki~~s~~~k--e~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~----- 131 (377)
.+-+..+. .+...|... -...++++.++.+|+.+..++.+++..-.+++....++..
T Consensus 746 k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~k 825 (1200)
T KOG0964|consen 746 KGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTK 825 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 111111111 1135567777888888888777766654444433333332
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHH
Q 017105 132 ----------------------EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQG 189 (377)
Q Consensus 132 ----------------------ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~ 189 (377)
++.....++..+......+..++..|-...+...+..-+.+..+.+++.++...--.
T Consensus 826 L~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~- 904 (1200)
T KOG0964|consen 826 LYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDN- 904 (1200)
T ss_pred HHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 234455556666666666777777777778888888888888888888877655333
Q ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Q 017105 190 LKELSNSEVEKYMTLWNNNKAFRDDYEKRL 219 (377)
Q Consensus 190 l~~~~~~eVe~fm~lwn~~~~FR~dY~k~~ 219 (377)
..| ..++|+.|..-+.--.=|++|.++|
T Consensus 905 -~~~-dKe~Ek~~~rk~~Ll~KreE~~ekI 932 (1200)
T KOG0964|consen 905 -INF-DKELEKLVRRKHMLLKKREECCEKI 932 (1200)
T ss_pred -hhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2788888888877777788777763
No 14
>PRK09039 hypothetical protein; Validated
Probab=94.09 E-value=2.4 Score=42.91 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=47.7
Q ss_pred HHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 94 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 94 iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
.+.+...+..+|+..+.........+..|+..+.+++..+..|+..++++......+...|..|...++...
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556667777777777766777777777777777777777777777777666666666665544443
No 15
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.04 E-value=10 Score=40.75 Aligned_cols=112 Identities=12% Similarity=0.270 Sum_probs=74.5
Q ss_pred HHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 82 AKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 161 (377)
Q Consensus 82 ~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~ 161 (377)
.++..-......+.+.+......+..+..+++.+...++.++.....+...+..|...-..+....+..-..+..++...
T Consensus 355 keL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 355 KQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455566666666777888888888888887777777777777777777777777777666666666544
Q ss_pred hhh---------hHHHHHHHHHHHHHHHHHhcc--CHHHHHHH
Q 017105 162 DEG---------NAYFFQYRALLNEAKAMSVKK--DVQGLKEL 193 (377)
Q Consensus 162 dE~---------n~~fyq~r~~~~karela~~~--~v~~l~~~ 193 (377)
... ...|+.-...+.....-...| |+.++...
T Consensus 435 ~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e 477 (569)
T PRK04778 435 EKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRL 477 (569)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 333 346666666677766666667 66777733
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=93.86 E-value=10 Score=42.23 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105 123 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 164 (377)
Q Consensus 123 edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~ 164 (377)
.+.+..+..+++.|..++..+...++...+.+..||.+.++.
T Consensus 598 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 598 LAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555556666666666665553
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.63 E-value=10 Score=39.70 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=46.5
Q ss_pred HHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105 95 QDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 170 (377)
Q Consensus 95 qeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq 170 (377)
+++...+...+..++..+...+..|..+..+...++.++..|......+..........+..|..+..+.....+.
T Consensus 329 ~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 329 MDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555666666666666666666666666666666666666666666666666666666666554433
No 18
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.43 E-value=2.7 Score=40.63 Aligned_cols=84 Identities=14% Similarity=0.291 Sum_probs=42.0
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 017105 67 LEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 146 (377)
Q Consensus 67 L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~ 146 (377)
+...|.++..+-...+.|-+.++.-+...--|.. ++++++.+...-....+.+.-|+.+|+.|..-...+...
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e-------~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEE-------YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665555444444444 444444444444444444444555555554444444444
Q ss_pred HHHHHHHHHHH
Q 017105 147 RDKAFANIKEL 157 (377)
Q Consensus 147 rd~Aye~i~~L 157 (377)
|++....|..|
T Consensus 76 r~~~~~~i~r~ 86 (230)
T PF10146_consen 76 RNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 19
>PRK09039 hypothetical protein; Validated
Probab=93.28 E-value=10 Score=38.41 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=40.5
Q ss_pred hhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 017105 106 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 179 (377)
Q Consensus 106 D~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kar 179 (377)
+.+......+...+......+.....++..|+.+..++..+....-..|..+..+-.+....+-.+...++.+-
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555566666666655555555555555555555555555555555543
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.22 E-value=20 Score=41.90 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhcCcC
Q 017105 33 EEELDDLIRSLQYRIQHEIIP 53 (377)
Q Consensus 33 ~eeiD~~I~~Le~~i~h~sm~ 53 (377)
..+++..|..+..++.+..-.
T Consensus 297 ~~~le~~~~~~~~~~~~~~~~ 317 (1163)
T COG1196 297 IEELEGEISLLRERLEELENE 317 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.21 E-value=15 Score=45.41 Aligned_cols=172 Identities=18% Similarity=0.288 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHH
Q 017105 35 ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQA 114 (377)
Q Consensus 35 eiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~da 114 (377)
.+......|+.++..---.|..|++...+.. +..|+....+...+..+.+.-.++..+..+++-+..+|-.+..+++.
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~E--k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~ 1087 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELE--KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLED 1087 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4455566677777777777888888888877 55566666666666666666667777777666655555554444444
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHH
Q 017105 115 VWAKISHLEGKVKALDEEIEALQ-------QEVNDVAEKRDKAFANIKELRKQRDEG--------------NAYFFQYRA 173 (377)
Q Consensus 115 lr~kik~ledk~~ai~~ei~~L~-------eEl~a~~e~rd~Aye~i~~LRkq~dE~--------------n~~fyq~r~ 173 (377)
...-+..+...+..+...|..|. ..+..+...+.+.-..+..|..+.++. ...|+.-++
T Consensus 1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~ 1167 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRR 1167 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433444444333333 334444444444444455555554443 225555555
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCCh
Q 017105 174 LLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNK 209 (377)
Q Consensus 174 ~~~karela~~~~v~~l~~~~~~eVe~fm~lwn~~~ 209 (377)
.+... .+.....+..++..|...|...=+..-+..
T Consensus 1168 ~leee-~~~~e~~~~~lr~~~~~~~~el~~qle~l~ 1202 (1930)
T KOG0161|consen 1168 DLEEE-TLDHEAQIEELRKKHADSLAELQEQLEQLQ 1202 (1930)
T ss_pred HHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 234455677777777777777666554433
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.18 E-value=17 Score=42.96 Aligned_cols=38 Identities=18% Similarity=0.022 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHH
Q 017105 186 DVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSL 223 (377)
Q Consensus 186 ~v~~l~~~~~~eVe~fm~lwn~~~~FR~dY~k~~~~S~ 223 (377)
+...+-.-+..+.+..+.-.+.-.+-+..|.+++...+
T Consensus 636 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~ 673 (1311)
T TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT 673 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566677888888777777888888888888873
No 23
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.05 E-value=4.2 Score=39.72 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017105 143 VAEKRDKAFANIKELRKQRDEGNAYFFQY 171 (377)
Q Consensus 143 ~~e~rd~Aye~i~~LRkq~dE~n~~fyq~ 171 (377)
+.+.+...+..+..|-...+..-..||+.
T Consensus 154 i~e~~~~~~~~~~~L~~~l~~ell~~yer 182 (239)
T COG1579 154 IREEGQELSSKREELKEKLDPELLSEYER 182 (239)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33333334444444444444333344443
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.46 E-value=20 Score=41.80 Aligned_cols=125 Identities=18% Similarity=0.288 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHH
Q 017105 54 LSEEKQILREIKQLEGTREKVMANAAMRA--KIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE 131 (377)
Q Consensus 54 L~EEKk~L~EI~~L~~~R~~V~anaa~~~--ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ 131 (377)
+.+++..+..|.+++-..+.+...-+..+ .+-+...+-..+.+.++.+...++.+...++....++..++.++..+.+
T Consensus 244 i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea 323 (1074)
T KOG0250|consen 244 IKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEA 323 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45666666666666555554443333211 1111111222233444444455555666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 017105 132 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 178 (377)
Q Consensus 132 ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ka 178 (377)
.+..+..+.++-..+.+.+.+.++.+|.+..+....|-+....+++.
T Consensus 324 ~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~ 370 (1074)
T KOG0250|consen 324 KIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKL 370 (1074)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666665555555554444444443
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.01 E-value=11 Score=43.86 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=25.1
Q ss_pred hHhhhhhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 017105 3 DKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQH 49 (377)
Q Consensus 3 ~K~~Em~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h 49 (377)
++++.|+.+++-..++..+.. ...|.-|-+++.....++..+.+
T Consensus 249 e~~~~~~~~e~~~~~l~~Lk~---k~~W~~V~~~~~ql~~~~~~i~~ 292 (1074)
T KOG0250|consen 249 EKLDNLEQLEDLKENLEQLKA---KMAWAWVNEVERQLNNQEEEIKK 292 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655554443 33456666666666666655544
No 26
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=91.84 E-value=12 Score=44.22 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=89.1
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 017105 118 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSE 197 (377)
Q Consensus 118 kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~e 197 (377)
.+...-.....+..++..|+++...+.-.+++.-+.+..|+...++....|++-...-+- .+..++..+..+.+.
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~ine~---- 946 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDINEK---- 946 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHH----
Confidence 333333455667778999999999999999999999999999999999999988777555 455555555555444
Q ss_pred HHHHHHHHhCChhhHH----HHHHHhHHHHHhhhhccCCCCCCCCC
Q 017105 198 VEKYMTLWNNNKAFRD----DYEKRLLQSLDMRQLSRDGRIRNPDE 239 (377)
Q Consensus 198 Ve~fm~lwn~~~~FR~----dY~k~~~~S~~~R~~t~DGR~~~pde 239 (377)
|..|......+..|+. +|-..+++.+..|+..+|+|+++--.
T Consensus 947 ~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~ 992 (1294)
T KOG0962|consen 947 VSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQ 992 (1294)
T ss_pred HHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777788875 34466788999999999999876543
No 27
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.77 E-value=5.5 Score=35.03 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHHHHHHH
Q 017105 152 ANIKELRKQRDEGNAYFFQYRALLNEAKAMS--VKKDVQGLKELSNSEVEKYM 202 (377)
Q Consensus 152 e~i~~LRkq~dE~n~~fyq~r~~~~karela--~~~~v~~l~~~~~~eVe~fm 202 (377)
..+..|+.++.+.+..|-...-.+-+..+.. -+.||.+|..+|..||+..|
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555555555555555444444443333 34599999999999998753
No 28
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.67 E-value=15 Score=41.44 Aligned_cols=12 Identities=8% Similarity=0.230 Sum_probs=6.0
Q ss_pred HHHHHHhHHHHH
Q 017105 213 DDYEKRLLQSLD 224 (377)
Q Consensus 213 ~dY~k~~~~S~~ 224 (377)
..|...+...+-
T Consensus 535 ~~y~~Aie~~lg 546 (1164)
T TIGR02169 535 ERYATAIEVAAG 546 (1164)
T ss_pred HHHHHHHHHHhh
Confidence 455555544443
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.64 E-value=24 Score=36.92 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=11.7
Q ss_pred HHHHHhCChhhHHHHHHHhHHH
Q 017105 201 YMTLWNNNKAFRDDYEKRLLQS 222 (377)
Q Consensus 201 fm~lwn~~~~FR~dY~k~~~~S 222 (377)
++.-|-.+..||.-+++..++.
T Consensus 407 ~i~~~~~~~g~~~~i~~~~l~~ 428 (562)
T PHA02562 407 IVTDLLKDSGIKASIIKKYIPY 428 (562)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444567776555554444
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.52 E-value=12 Score=37.42 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105 111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 164 (377)
Q Consensus 111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~ 164 (377)
++..++..|..+...+.+.+..+..|+.++..+........+.+..|..+..+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555555555555555555555555544443
No 31
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.15 E-value=4.6 Score=32.23 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=49.4
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY 167 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~ 167 (377)
|..+...++..++.+.-++.........|..+++.+....+.||..+..|+.+.+..-..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777788888888999999999999999999999999999887776544
No 32
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.04 E-value=4.7 Score=36.34 Aligned_cols=63 Identities=17% Similarity=0.397 Sum_probs=37.2
Q ss_pred HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 97 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEE--IEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 97 qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~e--i~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
.+..++.+|..|+.++..++..++.++..+..+... ...|......+.......-..+..|+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666666666666666666654 244555555555555555555555554
No 33
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.71 E-value=18 Score=42.12 Aligned_cols=110 Identities=17% Similarity=0.263 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhhhh----hhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017105 72 EKVMANAAMRAKIQESMGK----KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR 147 (377)
Q Consensus 72 ~~V~anaa~~~ki~~s~~~----ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~r 147 (377)
+.-+.|..++.. +++++. +..++++++.+...+..+.+.++.+...|+.++.-+..+..++++|+...-.+...-
T Consensus 382 el~~ln~~~r~~-~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~ 460 (1141)
T KOG0018|consen 382 ELEVLNRNMRSD-QDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEP 460 (1141)
T ss_pred HHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhH
Confidence 333444444444 444444 777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 017105 148 DKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS 182 (377)
Q Consensus 148 d~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela 182 (377)
.++..++...+.+.......++...+.++....+.
T Consensus 461 ~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave 495 (1141)
T KOG0018|consen 461 YELNEELVEVLDQLLDASADRHEGSRRSRKQEAVE 495 (1141)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHH
Confidence 99999999999999999999999998888766543
No 34
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=89.37 E-value=19 Score=33.84 Aligned_cols=186 Identities=16% Similarity=0.241 Sum_probs=89.8
Q ss_pred ChhHhhhhhHHHHHHhhhhccccc---cCCCCCCCHHHHHHHHHHHHH------------HHh--hcCcCchHHHHHHHH
Q 017105 1 MDDKRKEMEPLHQALGKLRTTNNA---RSGGICSSEEELDDLIRSLQY------------RIQ--HEIIPLSEEKQILRE 63 (377)
Q Consensus 1 ~~~K~~Em~~lq~aL~Klr~~~~A---~~~~~~~S~eeiD~~I~~Le~------------~i~--h~sm~L~EEKk~L~E 63 (377)
|.+++..|+.|...|..+...-.. +.+....+..++=..+..|=. .+. +..++-...+....+
T Consensus 6 F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e 85 (216)
T cd07627 6 FIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQD 85 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777655322211 112233333344333333322 222 112233334455555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 143 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~ 143 (377)
...|--+ +..|..+-+.+...|.++..+....-.....|+..+..++.+...-+.-.+++..+..+|..+......+
T Consensus 86 ~~~l~~~---L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a 162 (216)
T cd07627 86 VLTLGVT---LDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASEL 162 (216)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555433 5666677777777777777766666555555555555555554311111344444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH---HHHHh
Q 017105 144 AEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKY---MTLWN 206 (377)
Q Consensus 144 ~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~f---m~lwn 206 (377)
.. ....+......-...|...|. .++ ...|..|+..+++.+ +++|-
T Consensus 163 ~~-------~~e~is~~~k~El~rF~~~r~-----~df-----k~~l~~~~e~~ie~~k~~ie~We 211 (216)
T cd07627 163 KK-------EFEEVSELIKSELERFERERV-----EDF-----RNSVEIYLESAIESQKELIELWE 211 (216)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333333333333333332221 111 245778888888876 77773
No 35
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.85 E-value=4.2 Score=33.86 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=21.1
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDE---EIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~---ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
+..+++.+++..+.++..+..... +...|..+...+..+....-..+..+-.+
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333333333332 24444444444444444443333333333
No 36
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.82 E-value=5.1 Score=32.20 Aligned_cols=68 Identities=13% Similarity=0.281 Sum_probs=51.2
Q ss_pred HHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 95 QDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 95 qeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
...|+.++..|..|..+...+...--..+..++.++..+..+..++..+....+..-..+..|+....
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566677777777888888877777777777888888888888888888888887777777776543
No 37
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.62 E-value=19 Score=40.70 Aligned_cols=139 Identities=19% Similarity=0.312 Sum_probs=98.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHh--------hccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 79 AMRAKIQESMGKKEDIQDQVKL--------MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 150 (377)
Q Consensus 79 a~~~ki~~s~~~ke~iqeqiK~--------~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~A 150 (377)
...+.+..++..++-+++.+.. ...+++..++++..++..+..+..++....-.+..+.++...+.....+.
T Consensus 433 ~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~ 512 (775)
T PF10174_consen 433 EALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKK 512 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh
Confidence 3446666777777777766533 35677888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-CHHHH----------HHHHHHHHHHHHHHHhCChhhHHHHHH
Q 017105 151 FANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK-DVQGL----------KELSNSEVEKYMTLWNNNKAFRDDYEK 217 (377)
Q Consensus 151 ye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~-~v~~l----------~~~~~~eVe~fm~lwn~~~~FR~dY~k 217 (377)
+..|..|...+...+..+-.--..+.+++..+... .+..| -.-|.+|||+.|...-+-..=+.+-.+
T Consensus 513 ~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ 590 (775)
T PF10174_consen 513 DSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEK 590 (775)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999998888888877776666666643222221 22122 345789999999876555444444433
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.18 E-value=40 Score=36.09 Aligned_cols=9 Identities=44% Similarity=0.464 Sum_probs=3.8
Q ss_pred hhHHHHHHh
Q 017105 311 VDEAKLREM 319 (377)
Q Consensus 311 ~d~a~lKE~ 319 (377)
|++++-=+.
T Consensus 490 ve~ak~se~ 498 (522)
T PF05701_consen 490 VEAAKASEK 498 (522)
T ss_pred HHHHHHHHH
Confidence 444444333
No 39
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.89 E-value=33 Score=34.67 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 017105 111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 166 (377)
Q Consensus 111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~ 166 (377)
+++.++..|..+...+...+..+..++.++..+........+.+..++.+..+...
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555555555555555555555555555555555443
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.11 E-value=47 Score=39.29 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHH
Q 017105 30 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVM 75 (377)
Q Consensus 30 ~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~ 75 (377)
|.-++.+...|+.+|..+...+-....=+-+-..|+.|++..+.+-
T Consensus 833 ~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 833 AELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666666666644433322222222233777777777664
No 41
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.77 E-value=8 Score=35.82 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=24.8
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.|..+..++..++..+..+.+.+......+..|++|+.++.-.-.-+-+.+..|..+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444433
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.40 E-value=34 Score=33.31 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=6.2
Q ss_pred chHH-HHHHHHHHHHHHh
Q 017105 54 LSEE-KQILREIKQLEGT 70 (377)
Q Consensus 54 L~EE-Kk~L~EI~~L~~~ 70 (377)
|..+ +.+-.+|..|...
T Consensus 23 LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 23 LEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHH----
T ss_pred HHHHhhhhHHHHHHHHhc
Confidence 4444 3344556666555
No 43
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.39 E-value=24 Score=38.41 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=18.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017105 123 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 163 (377)
Q Consensus 123 edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE 163 (377)
.+++..++.++..+..++..+......+...|..|.+++..
T Consensus 427 ~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 427 LEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444433
No 44
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.06 E-value=53 Score=35.22 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=67.1
Q ss_pred hhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Q 017105 8 MEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPL-SEEKQILREIKQLEGTREKVMANAAMRAKIQ- 85 (377)
Q Consensus 8 m~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L-~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~- 85 (377)
|.++..++.+|-..-.|+...++..+-++...+..++..+.-.--.| .=|..-++=.+.|..++..|-.....-....
T Consensus 4 f~SVk~Avs~FG~~~~~k~~~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~ 83 (522)
T PF05701_consen 4 FESVKEAVSLFGGSIDWKKHQSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQA 83 (522)
T ss_pred ChHHHHHHHHcCCccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999888655555443222223333333333333332111110 0122223333344444443433222211111
Q ss_pred ---hhhhhhhhHHHHHHhhccchhh-----hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 86 ---ESMGKKEDIQDQVKLMGSDLDG-----VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 154 (377)
Q Consensus 86 ---~s~~~ke~iqeqiK~~~~eLD~-----LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i 154 (377)
.+...-+..+-+++.+..++.. .+.+++.++......-..+...+.++..|+.++..+.+.++.|+.+.
T Consensus 84 ~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~a 160 (522)
T PF05701_consen 84 EEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQA 160 (522)
T ss_pred HHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112222234444333332 55666666666666666666666666666666666666666665544
No 45
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.04 E-value=33 Score=32.79 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 017105 129 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 174 (377)
Q Consensus 129 i~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~ 174 (377)
+...|..|...+..+-..-+.|-..+..|-.+.+.....++..+..
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444333
No 46
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.01 E-value=11 Score=34.95 Aligned_cols=72 Identities=19% Similarity=0.351 Sum_probs=25.3
Q ss_pred hhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 90 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 161 (377)
Q Consensus 90 ~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~ 161 (377)
.+.....++-.+...+..++.++......|..+...+..+...+..|..++.+...-.+-.-.++..|.-++
T Consensus 89 ~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 89 SKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556566666666666666666666665555555555555555555555554444444444444443
No 47
>PRK01156 chromosome segregation protein; Provisional
Probab=84.97 E-value=54 Score=36.85 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHhH
Q 017105 55 SEEKQILREIKQLEGTR 71 (377)
Q Consensus 55 ~EEKk~L~EI~~L~~~R 71 (377)
.+-+++|.+|-.+..-.
T Consensus 149 ~~r~~~ld~~~~~~~~~ 165 (895)
T PRK01156 149 AQRKKILDEILEINSLE 165 (895)
T ss_pred HHHHHHHHHHhChHHHH
Confidence 45678888887666543
No 48
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.93 E-value=11 Score=36.44 Aligned_cols=63 Identities=14% Similarity=0.347 Sum_probs=40.6
Q ss_pred ccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105 102 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 164 (377)
Q Consensus 102 ~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~ 164 (377)
.++.|.++.++.-++..+.....+++..+++...|..+.+.+..+.|.+.++=..|+.+..-+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555566666666677777777777777777777777777776544
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.92 E-value=79 Score=38.48 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHh--ccCHHHHH
Q 017105 169 FQYRALLNEAKAMSV--KKDVQGLK 191 (377)
Q Consensus 169 yq~r~~~~karela~--~~~v~~l~ 191 (377)
-+....+..|+.+.. .-...+|+
T Consensus 417 qq~i~~Le~~~~~~~~~~~SdEeLe 441 (1486)
T PRK04863 417 QQAVQALERAKQLCGLPDLTADNAE 441 (1486)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 344445556666664 33444444
No 50
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.92 E-value=10 Score=37.61 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=10.5
Q ss_pred HHHHHHhCChhhHH
Q 017105 200 KYMTLWNNNKAFRD 213 (377)
Q Consensus 200 ~fm~lwn~~~~FR~ 213 (377)
-||...-+.++|=+
T Consensus 118 ~Yidvil~SkSfsD 131 (265)
T COG3883 118 SYIDVILNSKSFSD 131 (265)
T ss_pred HHHHHHHccCcHHH
Confidence 37888888888843
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.79 E-value=12 Score=35.59 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 128 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 128 ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
..+..+..|..+...+.++-..+-.++..|..+.+
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.76 E-value=66 Score=35.19 Aligned_cols=71 Identities=23% Similarity=0.406 Sum_probs=49.3
Q ss_pred hhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhhHHHHHHH
Q 017105 107 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK--------------QRDEGNAYFFQYR 172 (377)
Q Consensus 107 ~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk--------------q~dE~n~~fyq~r 172 (377)
.+..+.+.++..|-.+.+.+.+......-|..++..+...||.....+-.-|= ++.+.+..|++-|
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk 359 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEK 359 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777888888888899999999888888777643332 3445556666666
Q ss_pred HHHHH
Q 017105 173 ALLNE 177 (377)
Q Consensus 173 ~~~~k 177 (377)
..+..
T Consensus 360 ~~l~~ 364 (546)
T PF07888_consen 360 QALQH 364 (546)
T ss_pred HHHHH
Confidence 65543
No 53
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.59 E-value=26 Score=40.61 Aligned_cols=128 Identities=11% Similarity=0.204 Sum_probs=57.9
Q ss_pred CchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-------hccchhhhHHhHHHHHHHHHhHHHh
Q 017105 53 PLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKL-------MGSDLDGVKKESQAVWAKISHLEGK 125 (377)
Q Consensus 53 ~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~-------~~~eLD~LKKE~dalr~kik~ledk 125 (377)
.+.+....+..|.-|...++.| .|-....+.......++-+...++. +...+..|..+....+++++.....
T Consensus 220 ~~rer~~~~~~Ie~l~~k~~~v-~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~ 298 (1072)
T KOG0979|consen 220 RVRERERKKSKIELLEKKKKWV-EYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE 298 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-chHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH
Confidence 3556666666677666555533 2222222222222222222222222 1122223333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 017105 126 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 181 (377)
Q Consensus 126 ~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karel 181 (377)
+.+....+..+.+.++.+.+.-.+++..+..|+.+.+......-+.+..+-.++.-
T Consensus 299 ~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~e 354 (1072)
T KOG0979|consen 299 LNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAE 354 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444445555555555555555555555555555555555555555555544443
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.32 E-value=95 Score=36.66 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhC
Q 017105 185 KDVQGLKELSNSEVEKYMTLWNN 207 (377)
Q Consensus 185 ~~v~~l~~~~~~eVe~fm~lwn~ 207 (377)
-....+...+.+.+......|..
T Consensus 409 e~~~~~~~~~~~~~~~l~~~~~~ 431 (1201)
T PF12128_consen 409 EEKAERREQIEEEYQALEQELRQ 431 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777764
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.14 E-value=1.1e+02 Score=37.29 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=32.5
Q ss_pred hhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHH-HHHHHHHHHHHHhHH
Q 017105 8 MEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEE-KQILREIKQLEGTRE 72 (377)
Q Consensus 8 m~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EE-Kk~L~EI~~L~~~R~ 72 (377)
+..++++|+..|-+--|-..+ -+--+.+-+.|-.-..-+..-=|.-.+| ..+|.|+...+..|.
T Consensus 232 i~~m~~~l~~~r~t~~~~~~t-q~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~ 296 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVT-QSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELY 296 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 566777776665444331111 2223344444544444444444544445 667888866554433
No 56
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.01 E-value=73 Score=35.08 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=13.1
Q ss_pred HHHHHhCChhhHHHHHHHhHH
Q 017105 201 YMTLWNNNKAFRDDYEKRLLQ 221 (377)
Q Consensus 201 fm~lwn~~~~FR~dY~k~~~~ 221 (377)
=++.-+.+ .=|.-|.+||+-
T Consensus 476 e~e~~~k~-~~Rs~Yt~RIlE 495 (594)
T PF05667_consen 476 ELEKLPKD-VNRSAYTRRILE 495 (594)
T ss_pred HHHhCCCC-CCHHHHHHHHHH
Confidence 34444455 559999998873
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.19 E-value=35 Score=30.85 Aligned_cols=125 Identities=21% Similarity=0.307 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhh-------hHHhHHHHHHHHHhHHHhHHHH
Q 017105 57 EKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDG-------VKKESQAVWAKISHLEGKVKAL 129 (377)
Q Consensus 57 EKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~-------LKKE~dalr~kik~ledk~~ai 129 (377)
+++-|.-...|+.++.. ++.+.++|-.+-.+|.. +-.+....++.+..+.+.+..+
T Consensus 2 e~K~l~v~~kLK~~~~e-----------------~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l 64 (140)
T PF10473_consen 2 EEKFLHVEEKLKESESE-----------------KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL 64 (140)
T ss_pred cHHHHHHHHHHHHHHHh-----------------HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777776553 23344444443333332 3333444444555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 017105 130 DEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMT 203 (377)
Q Consensus 130 ~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~fm~ 203 (377)
...+..|..+++.++..++..-..++....+..+.-..-..+.+.+..+-.- ...+.+-+.+.|+....
T Consensus 65 t~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e-----k~q~~e~~~~~ve~L~~ 133 (140)
T PF10473_consen 65 TSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE-----KVQLKEESKSAVEMLQK 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666555444445554443331 44455555555554433
No 58
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=82.82 E-value=99 Score=38.65 Aligned_cols=131 Identities=18% Similarity=0.313 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhh
Q 017105 33 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEG-----TREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDG 107 (377)
Q Consensus 33 ~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~-----~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~ 107 (377)
+++++..=..+...+.+-...|..|.+.=.+.-.+++ +-+.-+++........+..-+-...+.+++.+..+++.
T Consensus 1571 ~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~ 1650 (1930)
T KOG0161|consen 1571 DEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELED 1650 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555555555556666555566666544443333333 11222222222333344444555567777777777777
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 163 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE 163 (377)
...-.+++++.+..++.++.++.+++..|...+..+...|.-+=.++.++......
T Consensus 1651 ~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~ 1706 (1930)
T KOG0161|consen 1651 AQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNE 1706 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766666665555555555444
No 59
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.79 E-value=30 Score=30.14 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=47.5
Q ss_pred hhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105 91 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 170 (377)
Q Consensus 91 ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq 170 (377)
+..++.++..+...|.+.|..++.+-. .-+.+.+.+..|+.+....+....+.-..|..++..++...-.+.+
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~k-------qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~ 83 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAK-------QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLE 83 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666655555555555554422 2234666677777777777777777777777777777765555545
Q ss_pred HHHHHHH
Q 017105 171 YRALLNE 177 (377)
Q Consensus 171 ~r~~~~k 177 (377)
-...+.+
T Consensus 84 l~~r~~k 90 (107)
T PF09304_consen 84 LESRLLK 90 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 60
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.78 E-value=18 Score=38.11 Aligned_cols=62 Identities=10% Similarity=0.220 Sum_probs=39.7
Q ss_pred hhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 100 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 161 (377)
Q Consensus 100 ~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~ 161 (377)
.+...|...+++...+...|+.++..+..+...+......++.+...+...-..|..|..|.
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344555566666666666666666666666666666666666666666666666666665
No 61
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=82.59 E-value=47 Score=31.90 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017105 137 QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 177 (377)
Q Consensus 137 ~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~k 177 (377)
..++..+......+|.....|+....++...|-+.-..+.+
T Consensus 240 ~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~ 280 (296)
T PF13949_consen 240 QKERESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNK 280 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46777777788889999999999999998755444444444
No 62
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.53 E-value=47 Score=31.87 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 017105 143 VAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180 (377)
Q Consensus 143 ~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kare 180 (377)
+...-+...++|..+|...+.....|-+-|+.|..=++
T Consensus 136 l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKe 173 (202)
T PF06818_consen 136 LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKE 173 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777888888888888887554
No 63
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=82.00 E-value=34 Score=37.32 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=59.3
Q ss_pred hccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017105 101 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 177 (377)
Q Consensus 101 ~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~k 177 (377)
...+|+++....+++.+.+..-.-.++.+...+..+...+..+........++++.||+.--+.....-.+++.+..
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e 428 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE 428 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777778889999999999999999999999999999999654444444444444444
No 64
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.95 E-value=30 Score=41.08 Aligned_cols=95 Identities=15% Similarity=0.266 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHH
Q 017105 31 SSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKK 110 (377)
Q Consensus 31 ~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKK 110 (377)
++..+++..+.....-+...+++.++=.++-..+..|+++ |.+...+.+++... -..|.+.+..-+.+|++|..
T Consensus 1201 s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~---l~~~~e~L~~~E~~---Lsdi~~~~~~a~~~LesLq~ 1274 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQ---LQALTEDLPQEEET---LSDITNSLPLAGKDLESLQR 1274 (1758)
T ss_pred hHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhhh---hhhhhhccchhhhhHHHHHH
Confidence 4567788888888888888888888888888888777766 55544444443332 23344455555677888888
Q ss_pred hHHHHHHHHHhHHHhHHHHHH
Q 017105 111 ESQAVWAKISHLEGKVKALDE 131 (377)
Q Consensus 111 E~dalr~kik~ledk~~ai~~ 131 (377)
+.+.+....++|.+.+..|+.
T Consensus 1275 ~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1275 EFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 888877777777777766664
No 65
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.84 E-value=32 Score=34.26 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=52.7
Q ss_pred HHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 017105 94 IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 173 (377)
Q Consensus 94 iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~ 173 (377)
+++.|+.....+..++..++.+.+.-..|+.++..-+.++.-.+..|..+...|=...++-..|-.++...-..|...=|
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666777777666667777777777777777777777777766666666666666666555544443
Q ss_pred HH
Q 017105 174 LL 175 (377)
Q Consensus 174 ~~ 175 (377)
.+
T Consensus 247 Nl 248 (267)
T PF10234_consen 247 NL 248 (267)
T ss_pred hH
Confidence 33
No 66
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.68 E-value=1.2e+02 Score=35.76 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHHHHHhHH
Q 017105 54 LSEEKQILREIKQLEGTRE 72 (377)
Q Consensus 54 L~EEKk~L~EI~~L~~~R~ 72 (377)
|.+||.=|..-.+|.+.|.
T Consensus 203 LEeEKeeL~~Yqkldk~rr 221 (1200)
T KOG0964|consen 203 LEEEKEELEKYQKLDKERR 221 (1200)
T ss_pred HHHhHHHHHHHHHHHHhHh
Confidence 5555555555555555555
No 67
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.40 E-value=1.2e+02 Score=35.71 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=52.4
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA--- 180 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kare--- 180 (377)
.+..+.++++....++.+-...++.-..++..|+-+..++...++..-..+..+..+.+..-...-+.+-.+..+..
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 34445555555555555555555555555666666666666666655555555555554444333333333322111
Q ss_pred --HHhccCHHHHHHHHHHHHHHHHHHH
Q 017105 181 --MSVKKDVQGLKELSNSEVEKYMTLW 205 (377)
Q Consensus 181 --la~~~~v~~l~~~~~~eVe~fm~lw 205 (377)
.+.=.+..+-+..|++|...++..|
T Consensus 868 ~~~~el~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 868 KAQAELKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence 0122234445556677777777766
No 68
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.34 E-value=60 Score=31.59 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=11.3
Q ss_pred hhhhhHHHHHH----hhhhccc
Q 017105 5 RKEMEPLHQAL----GKLRTTN 22 (377)
Q Consensus 5 ~~Em~~lq~aL----~Klr~~~ 22 (377)
+.+|..|.+.| .|+|.+.
T Consensus 3 K~eL~~LNdRla~YIekVr~LE 24 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLE 24 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777 4666544
No 69
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.65 E-value=34 Score=34.37 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=61.6
Q ss_pred hhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 017105 100 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 179 (377)
Q Consensus 100 ~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kar 179 (377)
.+..++..+..+...+...+..++.....+..++..|..+...+...-...+...+.+.-+........
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~----------- 115 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER----------- 115 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344455666666666776776766666667777777777766666666655555555544433332211
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCCCCCC
Q 017105 180 AMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRN 236 (377)
Q Consensus 180 ela~~~~v~~l~~~~~~eVe~fm~lwn~~~~FR~dY~k~~~~S~~~R~~t~DGR~~~ 236 (377)
..+..--.+..+++++--..=-=|+.|. | |.+--++|=.|=-+|
T Consensus 116 -----~sl~~q~~~~~~~L~~L~ktNv~n~~F~------I--~hdG~fGTINGlRLG 159 (314)
T PF04111_consen 116 -----DSLKNQYEYASNQLDRLRKTNVYNDTFH------I--WHDGPFGTINGLRLG 159 (314)
T ss_dssp -----HHHHHHHHHHHHHHHCHHT--TTTTT--------E--EEETTEEEETTEEE-
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCchhceee------E--eecCCeeeECCeeec
Confidence 1122223345556666555444567773 3 334577777777666
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.65 E-value=89 Score=34.20 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=33.6
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 017105 118 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 169 (377)
Q Consensus 118 kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fy 169 (377)
.|....-.+..+++.+..++.|...+.+.+++....|..|+..++...+.+|
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~ 462 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW 462 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444444555666666677777777777777777777777777666655444
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=79.50 E-value=47 Score=39.50 Aligned_cols=78 Identities=12% Similarity=0.230 Sum_probs=60.0
Q ss_pred hhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105 87 SMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 164 (377)
Q Consensus 87 s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~ 164 (377)
.++......+-|..+...+.+|++++.+++..|-+++..++-+...++.-..+|..+....+....-.++|+.+++..
T Consensus 1216 il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1216 ILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444566777788999999999999999999999998888777777777777777777777777777776554
No 72
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=79.42 E-value=49 Score=30.03 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHH
Q 017105 188 QGLKELSNSEVEKYMTLWNNNKAFRDD 214 (377)
Q Consensus 188 ~~l~~~~~~eVe~fm~lwn~~~~FR~d 214 (377)
..|-.-|...++..-.++..=..+|.-
T Consensus 141 P~ll~Dy~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 141 PALLRDYDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455444444444444443
No 73
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=79.36 E-value=88 Score=37.02 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=61.9
Q ss_pred hhhHHHHHHhhhhcccc----ccCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHH-HHHHHHHH
Q 017105 7 EMEPLHQALGKLRTTNN----ARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK-VMANAAMR 81 (377)
Q Consensus 7 Em~~lq~aL~Klr~~~~----A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~-V~anaa~~ 81 (377)
-++.||+.|.=||.... ...+.-|+.+|.|+.+|..++-.+....+. .+-++|+.|...+.+ ....-.|-
T Consensus 1132 ~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~-----eitKqIsaLe~e~PKnltdvK~mi 1206 (1439)
T PF12252_consen 1132 NLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLV-----EITKQISALEKEKPKNLTDVKSMI 1206 (1439)
T ss_pred HHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHhhCCCchhhHHHHH
Confidence 45678888866665443 244567888777777777777666554432 356688888863221 22233333
Q ss_pred HHHHhhhhhhhhH-HHHHHhhc--------cchhhhHHhHHHHHHH
Q 017105 82 AKIQESMGKKEDI-QDQVKLMG--------SDLDGVKKESQAVWAK 118 (377)
Q Consensus 82 ~ki~~s~~~ke~i-qeqiK~~~--------~eLD~LKKE~dalr~k 118 (377)
..+-+.+..-+-+ +++||..+ .+||.|+-+++-+...
T Consensus 1207 ssf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~ 1252 (1439)
T PF12252_consen 1207 SSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQN 1252 (1439)
T ss_pred HHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHH
Confidence 3334444444443 45666543 4677777777665543
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.20 E-value=40 Score=30.24 Aligned_cols=79 Identities=15% Similarity=0.338 Sum_probs=32.2
Q ss_pred hhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhH
Q 017105 90 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD---KAFANIKELRKQRDEGNA 166 (377)
Q Consensus 90 ~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd---~Aye~i~~LRkq~dE~n~ 166 (377)
.-+.+..++|.+......+-.++..+..++..+++.+..+...+..+...+........ .+...|+.|=.+++....
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444443333333322211 233344444444444443
Q ss_pred HH
Q 017105 167 YF 168 (377)
Q Consensus 167 ~f 168 (377)
.+
T Consensus 95 ~L 96 (143)
T PF12718_consen 95 KL 96 (143)
T ss_pred HH
Confidence 33
No 75
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.13 E-value=21 Score=34.50 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=29.7
Q ss_pred HhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 99 KLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN 153 (377)
Q Consensus 99 K~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~ 153 (377)
....++++.++.++..-...++.+..+..++.+....++.|.+-+.+.-+..-+.
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555544443333
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=79.03 E-value=1.1e+02 Score=33.97 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 017105 131 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK 185 (377)
Q Consensus 131 ~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~ 185 (377)
.++..|+.+.+.+....+..-+.-..|-.+....+..|..--..+...+....+|
T Consensus 223 qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~ 277 (617)
T PF15070_consen 223 QEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQG 277 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444333333333222223334444444544444444444444444444
No 77
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.62 E-value=32 Score=30.96 Aligned_cols=54 Identities=19% Similarity=0.371 Sum_probs=22.1
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhh
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR--DKAFANIKELRKQRDEG 164 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~r--d~Aye~i~~LRkq~dE~ 164 (377)
++..+..++..++..+ ..++.++..|..++..+...- .++-..|..|..+....
T Consensus 73 el~~ld~ei~~L~~el-------~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 73 ELAELDAEIKELREEL-------AELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEEL 128 (169)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 334444444444444433322 23333444444443333
No 78
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.46 E-value=30 Score=34.47 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=6.7
Q ss_pred hCChhhHHHHHHHhHHH
Q 017105 206 NNNKAFRDDYEKRLLQS 222 (377)
Q Consensus 206 n~~~~FR~dY~k~~~~S 222 (377)
|+.-.| |.--++-|
T Consensus 113 nG~~t~---Yidvil~S 126 (265)
T COG3883 113 NGTATS---YIDVILNS 126 (265)
T ss_pred cCChhH---HHHHHHcc
Confidence 344444 66554443
No 79
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=78.44 E-value=76 Score=31.68 Aligned_cols=99 Identities=15% Similarity=0.264 Sum_probs=51.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 017105 63 EIKQLEGTREKVMANAAMRAKIQESMGK----KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQ 138 (377)
Q Consensus 63 EI~~L~~~R~~V~anaa~~~ki~~s~~~----ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~e 138 (377)
.|..|+..|..++.....=+.+-+.+|. ++.-..++ .-.-+++++.+- ++..|+.+...+...+..+..|..
T Consensus 115 k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~-~r~~e~~~iE~~---l~~ai~~~~~~~~~~~~~l~~l~~ 190 (267)
T PF10234_consen 115 KIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRAL-ARPLELNEIEKA---LKEAIKAVQQQLQQTQQQLNNLAS 190 (267)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHH-cCCcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666555555444444444443 32222222 223455544433 334445555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 139 EVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 139 El~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
+-..+..++.+.-.++...++.+....
T Consensus 191 de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 191 DEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555555554443
No 80
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.20 E-value=1.3e+02 Score=35.09 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHH----------------HHHHHHHHH
Q 017105 141 NDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSN----------------SEVEKYMTL 204 (377)
Q Consensus 141 ~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~----------------~eVe~fm~l 204 (377)
..+.++.|.+.-+++.|-.+++......|++---+.+-|++.++.+ ..|+++.+ .+.=-|--+
T Consensus 493 ~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq-dqlqe~~dq~~Sseees~q~~s~~~et~dyk~~ 571 (1243)
T KOG0971|consen 493 LDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ-DQLQELTDQQESSEEESQQPPSVDPETFDYKIK 571 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHH
Confidence 4577888888888899999999999999999888888888877652 22333222 112234455
Q ss_pred HhCChhhHHHHH---HHhHHHHHhhhhc
Q 017105 205 WNNNKAFRDDYE---KRLLQSLDMRQLS 229 (377)
Q Consensus 205 wn~~~~FR~dY~---k~~~~S~~~R~~t 229 (377)
+.-+++|=++-+ +-|-.+.-+|..+
T Consensus 572 fa~skayaraie~QlrqiEv~~a~rh~~ 599 (1243)
T KOG0971|consen 572 FAESKAYARAIEMQLRQIEVAQANRHMS 599 (1243)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766543 4455666666653
No 81
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.15 E-value=44 Score=38.19 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=38.3
Q ss_pred HHHHHhhcCcCchHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHH
Q 017105 43 LQYRIQHEIIPLSEEKQILREIK----QLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAK 118 (377)
Q Consensus 43 Le~~i~h~sm~L~EEKk~L~EI~----~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~k 118 (377)
||.|-.-+.-.-.|+|+-|.... .|+++|..= =-++.+++-+.++..-|+.|=-+++...-|.-++..+..+
T Consensus 377 LerQReiE~qrEEerkkeie~rEaar~ElEkqRqle----wErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k 452 (1118)
T KOG1029|consen 377 LERQREIERQREEERKKEIERREAAREELEKQRQLE----WERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFK 452 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333333444455444433 344444422 2255566666666665655533344444444444444444
Q ss_pred HHhHHHhHHHHH
Q 017105 119 ISHLEGKVKALD 130 (377)
Q Consensus 119 ik~ledk~~ai~ 130 (377)
+.+|+.++--+.
T Consensus 453 ~qqls~kl~Dvr 464 (1118)
T KOG1029|consen 453 LQQLSGKLQDVR 464 (1118)
T ss_pred HHHHhhhhhhhe
Confidence 444444443333
No 82
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.05 E-value=1.6e+02 Score=35.20 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 017105 126 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180 (377)
Q Consensus 126 ~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kare 180 (377)
+..-+..+..+..++.....++..+-..+..|+......+...+..|..+.+++.
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555555555555555555555555555555444444
No 83
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.01 E-value=1.3e+02 Score=34.24 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 017105 111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 179 (377)
Q Consensus 111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kar 179 (377)
++.++..++..+.......+..|..|.+.+.+........-..+..||-.+++.+..+=.....+..+.
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555555555555555555555555544444443333333
No 84
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.88 E-value=1.1e+02 Score=33.42 Aligned_cols=60 Identities=22% Similarity=0.420 Sum_probs=48.9
Q ss_pred hhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 017105 107 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 166 (377)
Q Consensus 107 ~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~ 166 (377)
+.+.+++.....|..++.++.-++..+..|.+++..+...-...|.+|..+|+++|.-..
T Consensus 138 ~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl 197 (546)
T KOG0977|consen 138 GAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL 197 (546)
T ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 444555555666777777788888899999999999999999999999999999887764
No 85
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.91 E-value=72 Score=30.59 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=67.0
Q ss_pred HHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 81 RAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 81 ~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
+.++.+..+++..+...+. .+.++++.++.....++.-+...+.++.+|..+.+.+...+.....-+...-+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~-------~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~ 113 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYR-------QLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544444 466666666666666667777788888888888888888888877766666665
Q ss_pred HhhhhH-----HHHHHHHHHHHHHHHHhccCHHHH
Q 017105 161 RDEGNA-----YFFQYRALLNEAKAMSVKKDVQGL 190 (377)
Q Consensus 161 ~dE~n~-----~fyq~r~~~~karela~~~~v~~l 190 (377)
+..--. ..-+....+...+.+....|+...
T Consensus 114 L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ 148 (251)
T PF11932_consen 114 LEQFVELDLPFLLEERQERLARLRAMLDDADVSLA 148 (251)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHH
Confidence 555222 223455666777888888877654
No 86
>PHA01750 hypothetical protein
Probab=76.84 E-value=7.9 Score=31.24 Aligned_cols=49 Identities=29% Similarity=0.397 Sum_probs=25.8
Q ss_pred HHhhhhhhhhHHHHHHhh-ccchhhhHHhHHHHHHHHHhHHHhHHHHHHH
Q 017105 84 IQESMGKKEDIQDQVKLM-GSDLDGVKKESQAVWAKISHLEGKVKALDEE 132 (377)
Q Consensus 84 i~~s~~~ke~iqeqiK~~-~~eLD~LKKE~dalr~kik~ledk~~ai~~e 132 (377)
++=.+-=+.++.+.|+.+ ..+||.|+++++++.-+++.++.++..++..
T Consensus 22 iqlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 22 IQLYLKIKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 333444445555556554 3466666666666665555544444444443
No 87
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.42 E-value=39 Score=33.34 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=31.7
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 163 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE 163 (377)
.++++.++-.++...+..++.++.+.+..+..|..+..-+.+.++..-.+.-.|++.+++
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555555555444444444444443
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.41 E-value=1.1e+02 Score=32.49 Aligned_cols=73 Identities=18% Similarity=0.344 Sum_probs=40.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 017105 65 KQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEV 140 (377)
Q Consensus 65 ~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl 140 (377)
++|+.++..+..... .|..+-.+...++.+|+.+..+|+.|..++-.....++.++..+..++..+..|..+.
T Consensus 38 ~~l~q~q~ei~~~~~---~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEK---KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556666554443333 3344444666677777776666666666555555555555555555555555555444
No 89
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.98 E-value=55 Score=30.61 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 017105 110 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 169 (377)
Q Consensus 110 KE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fy 169 (377)
..++.+...+..+..++..+...+......+.. ...|....+.+..|+.+.......+-
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~-~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREE-SEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444333222 25666666666666666666654443
No 90
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.87 E-value=59 Score=36.33 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcCchHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHhhc
Q 017105 29 ICSSEEELDDLIRSLQYRIQHEIIPLSEE-----KQILREIKQLEGTREKVMANAAMRAKIQESM-GKKEDIQDQVKLMG 102 (377)
Q Consensus 29 ~~~S~eeiD~~I~~Le~~i~h~sm~L~EE-----Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~-~~ke~iqeqiK~~~ 102 (377)
.+-+..+.|..+..|++.+..-.-.++|+ .+++++|..+++--..+.+-.+..-.+.... ..-..+.+++..+.
T Consensus 30 igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~ 109 (660)
T KOG4302|consen 30 IGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLK 109 (660)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHH
Confidence 45778899999999998876655566665 7788899888887555544333322211100 01124566666666
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDE 131 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ 131 (377)
--|.+++++.+.=+..++.+-..+..+-.
T Consensus 110 ~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 110 PYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665555554443
No 91
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=75.65 E-value=1.5e+02 Score=33.70 Aligned_cols=75 Identities=24% Similarity=0.326 Sum_probs=54.2
Q ss_pred hhhHHHHHHhhccchhhhHHhHHHHHHHHHhHH---------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 91 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLE---------GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 161 (377)
Q Consensus 91 ke~iqeqiK~~~~eLD~LKKE~dalr~kik~le---------dk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~ 161 (377)
++....+|..+...+..+-+++|++|..++.+. |.+...+..|..|+.+-..+..+.=.--.-|++||++.
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ 483 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKI 483 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 444555666666667777777777777777554 45556777788888888888888877778888999886
Q ss_pred hhhh
Q 017105 162 DEGN 165 (377)
Q Consensus 162 dE~n 165 (377)
.+..
T Consensus 484 ke~e 487 (961)
T KOG4673|consen 484 KEAE 487 (961)
T ss_pred hhhh
Confidence 5543
No 92
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=75.56 E-value=1.5e+02 Score=33.68 Aligned_cols=190 Identities=21% Similarity=0.255 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhH
Q 017105 30 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVK 109 (377)
Q Consensus 30 ~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LK 109 (377)
-+--++...+|+.||..++..+ .|-.-+=+||+.|+..-...+- .+-+.+++.++.++-. +=..|-
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~---kERDalr~e~kslk~ela~~l~--------~DeLaEkdE~I~~lm~---EGEkLS 466 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALT---KERDALRREQKSLKKELAAALL--------KDELAEKDEIINQLMA---EGEKLS 466 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHH---HHHHhH
Confidence 3446889999999999998643 4555566788888776432221 2455566666555533 334455
Q ss_pred HhHHHHHHHHHhHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhHHHHHHHHHH
Q 017105 110 KESQAVWAKISHLEGKVKA-------LDEEIEALQQEVNDVAEKRDKAFANI-------KELRKQRDEGNAYFFQYRALL 175 (377)
Q Consensus 110 KE~dalr~kik~ledk~~a-------i~~ei~~L~eEl~a~~e~rd~Aye~i-------~~LRkq~dE~n~~fyq~r~~~ 175 (377)
|++-+....|+.|+.+.+. ....|..|+.+.+.+....+..-+-= ..+-.+..-...+|-+.|..+
T Consensus 467 K~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~ 546 (961)
T KOG4673|consen 467 KKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALA 546 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6655555566655544433 33467777777777776655543332 222222222222333323222
Q ss_pred HHH--HHHH------------------hccCHHHHHHHHHHHHHHHH---HHHhCChhhHHHHHHHhHHHHHhhhhccCC
Q 017105 176 NEA--KAMS------------------VKKDVQGLKELSNSEVEKYM---TLWNNNKAFRDDYEKRLLQSLDMRQLSRDG 232 (377)
Q Consensus 176 ~ka--rela------------------~~~~v~~l~~~~~~eVe~fm---~lwn~~~~FR~dY~k~~~~S~~~R~~t~DG 232 (377)
... +.++ .+-..++=++.++.||+-.- .+--..-+.|+||.+--..-|.||+.--.-
T Consensus 547 ~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~ 626 (961)
T KOG4673|consen 547 AALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAER 626 (961)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1111 11123344455666666543 333456689999999999999999876554
Q ss_pred C
Q 017105 233 R 233 (377)
Q Consensus 233 R 233 (377)
|
T Consensus 627 R 627 (961)
T KOG4673|consen 627 R 627 (961)
T ss_pred H
Confidence 4
No 93
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.47 E-value=26 Score=27.24 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=17.4
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 117 AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 155 (377)
Q Consensus 117 ~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~ 155 (377)
..+..|..++..+..+++.|+.+..++.++=.+|...|+
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444443
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=74.88 E-value=1.3e+02 Score=32.57 Aligned_cols=90 Identities=21% Similarity=0.308 Sum_probs=49.6
Q ss_pred hhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--H
Q 017105 90 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA--Y 167 (377)
Q Consensus 90 ~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~--~ 167 (377)
.-+.+.++++.+..+|+.|...-..-+..+..+.+++..++..+-+-.-.+-.+..........+.....++.+.+. +
T Consensus 109 ~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD 188 (560)
T PF06160_consen 109 QLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGD 188 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34444555555555666666666666666666666666666655555555555555555555555555555555544 4
Q ss_pred HHHHHHHHHHHH
Q 017105 168 FFQYRALLNEAK 179 (377)
Q Consensus 168 fyq~r~~~~kar 179 (377)
|-.-+..+...+
T Consensus 189 ~~~A~eil~~l~ 200 (560)
T PF06160_consen 189 YLEAREILEKLK 200 (560)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 95
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=74.54 E-value=1.6e+02 Score=36.63 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHH
Q 017105 28 GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTRE 72 (377)
Q Consensus 28 ~~~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~ 72 (377)
..|+.++++...+...+--.+..+.++.+=+-++..+..+.-.|+
T Consensus 1185 ~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~E 1229 (1822)
T KOG4674|consen 1185 SLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRE 1229 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 356777788877877777777788888888888888888886655
No 96
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=74.09 E-value=10 Score=31.01 Aligned_cols=48 Identities=17% Similarity=0.402 Sum_probs=24.5
Q ss_pred HHHhhccchhhhHHhHHHHHHHHHh---HHHhHHHHHHHHHHHHHHHHHHH
Q 017105 97 QVKLMGSDLDGVKKESQAVWAKISH---LEGKVKALDEEIEALQQEVNDVA 144 (377)
Q Consensus 97 qiK~~~~eLD~LKKE~dalr~kik~---ledk~~ai~~ei~~L~eEl~a~~ 144 (377)
-|+..+...|+|....+.++..+.. +++++.++...+..|...+.++.
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444 45555555555555555444443
No 97
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.73 E-value=18 Score=28.13 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=30.9
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 149 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~ 149 (377)
.||.|-.+.+.+..++.+|...+..++.++....+|-..++.+.|-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666777777777777777777666654
No 98
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.68 E-value=46 Score=26.81 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 131 EEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 131 ~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.+...|..+-..+...+...+.+|+.|=..
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444455555555544433
No 99
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.53 E-value=19 Score=37.61 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 135 ALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 135 ~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.|.++...+.++....-+.+..|..+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 100
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.40 E-value=2e+02 Score=34.02 Aligned_cols=125 Identities=22% Similarity=0.292 Sum_probs=67.5
Q ss_pred CchHHHHHHHHHH----HHHHhHHHHHHHHHHHHH--HHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHH--
Q 017105 53 PLSEEKQILREIK----QLEGTREKVMANAAMRAK--IQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEG-- 124 (377)
Q Consensus 53 ~L~EEKk~L~EI~----~L~~~R~~V~anaa~~~k--i~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~led-- 124 (377)
.|.+||...-|-. .|+..+...++|--.++. ...+..+-+..++.+..+++.+....+++..+...|+.+..
T Consensus 209 KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~r 288 (1174)
T KOG0933|consen 209 KLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQR 288 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5777777776666 555555556666533222 22333333444555555555555555555555555555543
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017105 125 ------KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 177 (377)
Q Consensus 125 ------k~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~k 177 (377)
.++++.+.+++++.+..-..-..+-.-+.|+..+....+.+...-..+..+.+
T Consensus 289 d~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~ 347 (1174)
T KOG0933|consen 289 DAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKE 347 (1174)
T ss_pred HHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH
Confidence 22334444455554444444445555556666666666666666665555544
No 101
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.40 E-value=67 Score=30.87 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=41.1
Q ss_pred HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017105 97 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR 172 (377)
Q Consensus 97 qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r 172 (377)
.|..++.+|-+||..+...++.+...+..+..+...+.+-..++..+...-+..-..+.-||.............|
T Consensus 25 E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 25 EVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 3444555666677777777766666666666555555555555555555544444444444444444443333333
No 102
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.57 E-value=17 Score=30.81 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=12.5
Q ss_pred CchHHHHHHHHHHHHHHhHH
Q 017105 53 PLSEEKQILREIKQLEGTRE 72 (377)
Q Consensus 53 ~L~EEKk~L~EI~~L~~~R~ 72 (377)
.+.|=..++.+++.|...+.
T Consensus 32 ~~~E~~~v~~eL~~l~~d~~ 51 (110)
T TIGR02338 32 QLKEAEKALEELERLPDDTP 51 (110)
T ss_pred HHHHHHHHHHHHHcCCCcch
Confidence 34445667777777766555
No 103
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=72.16 E-value=1.1e+02 Score=30.76 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017105 134 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 171 (377)
Q Consensus 134 ~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~ 171 (377)
.....++..+......||.....|.....++...|=+.
T Consensus 284 ~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~kFY~dL 321 (339)
T cd09238 284 EGWRAATESHATQIRAAVAKYRELREGMEEGLRFYSGF 321 (339)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 34555666777777888888888888888887544333
No 104
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=71.97 E-value=2.3e+02 Score=34.21 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.5
Q ss_pred CCCHHHHH
Q 017105 30 CSSEEELD 37 (377)
Q Consensus 30 ~~S~eeiD 37 (377)
|.+..+|.
T Consensus 782 ~Ps~~dL~ 789 (1353)
T TIGR02680 782 APSDRSLR 789 (1353)
T ss_pred CCCchHHH
Confidence 44444443
No 105
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.87 E-value=30 Score=34.14 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=50.2
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDV 187 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v 187 (377)
+|.....++.++..+-..-.++-+++..|+.++.++++.....-.+...|-..++..-..+|..+..+...-. .
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~-----~- 206 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP-----G- 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc-----c-
Confidence 4444555555555544444555555555555555555555555555555555566666677777766665332 1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 017105 188 QGLKELSNSEVEKYMTLWN 206 (377)
Q Consensus 188 ~~l~~~~~~eVe~fm~lwn 206 (377)
+-..+-+.||-+|.
T Consensus 207 -----~El~e~~~i~dl~~ 220 (290)
T COG4026 207 -----VELPEEELISDLVK 220 (290)
T ss_pred -----ccchHHHHHHHHHH
Confidence 12345678999995
No 106
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.23 E-value=74 Score=31.99 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 017105 59 QILREIKQLEG 69 (377)
Q Consensus 59 k~L~EI~~L~~ 69 (377)
.+..|++.|+.
T Consensus 47 ~~~~el~~le~ 57 (314)
T PF04111_consen 47 ELEEELEKLEQ 57 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.00 E-value=2.1e+02 Score=33.18 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=28.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHH
Q 017105 24 ARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKV 74 (377)
Q Consensus 24 A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V 74 (377)
++.+..-.-.+-|+..+..|..+++.--..+.--|.. |..+.++|+.-
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~---ie~~~~q~e~~ 484 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTE---IEEVTKQRELM 484 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHH---HHHhhhHHHHH
Confidence 3334444456677788888888887776666655543 34445555543
No 108
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=70.97 E-value=2.3e+02 Score=33.63 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=63.9
Q ss_pred hhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHH
Q 017105 92 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD-KAFANIKELRKQRDEGNAYFFQ 170 (377)
Q Consensus 92 e~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd-~Aye~i~~LRkq~dE~n~~fyq 170 (377)
+.+..+++..+..++.++.++...+..++.....+..++.+...+..+.......+. .+-..+..|..+....+...-.
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666677777777777777777777777666666666555544443 3333444444444333332222
Q ss_pred H---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhC
Q 017105 171 Y---RALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNN 207 (377)
Q Consensus 171 ~---r~~~~karela~~~~v~~l~~~~~~eVe~fm~lwn~ 207 (377)
. ...-........+....++..-+..+++.+...-+.
T Consensus 704 ~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~ 743 (1201)
T PF12128_consen 704 LLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAA 743 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 212222223344556667777777777777766643
No 109
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.78 E-value=1.1e+02 Score=29.82 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=28.0
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 115 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 115 lr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
.-..|..+..-+..+...|..+..+++...+.....|+....|+.+.|+.-
T Consensus 51 h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 51 HVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445555555666666666666666666666666555554
No 110
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.54 E-value=2.5e+02 Score=33.90 Aligned_cols=51 Identities=24% Similarity=0.214 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 017105 133 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 183 (377)
Q Consensus 133 i~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~ 183 (377)
+..+.............+......++.+.++....++.....+..+.+-+.
T Consensus 342 l~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~ 392 (1353)
T TIGR02680 342 AEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLA 392 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444555566777777777777777777666555443
No 111
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.48 E-value=2.3e+02 Score=33.49 Aligned_cols=146 Identities=23% Similarity=0.311 Sum_probs=73.7
Q ss_pred HHHHHHh-hhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHH-----------HHHHHHHHHHHH----hHHH
Q 017105 10 PLHQALG-KLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEE-----------KQILREIKQLEG----TREK 73 (377)
Q Consensus 10 ~lq~aL~-Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EE-----------Kk~L~EI~~L~~----~R~~ 73 (377)
-|||+|| +=+..==| ..-.+.-.++.-+.-|||-.--.+|.=.=| |-+..||..|+. +|++
T Consensus 350 LLQDSLGGkTKT~iIA---TiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 350 LLQDSLGGKTKTCIIA---TISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred HHHHHhCCCceeEEEE---EeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4889994 44422221 122445578888999999988877742222 344556665543 3333
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 74 VMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN 153 (377)
Q Consensus 74 V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~ 153 (377)
-+-|.+. + +... .-++.++.-..|++++.++..++..+..+++.+..........++.
T Consensus 427 nGvyise-----e----------~y~~-------~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~ 484 (1041)
T KOG0243|consen 427 NGVYISE-----E----------RYTQ-------EEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEE 484 (1041)
T ss_pred CceEech-----H----------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333321 1 1110 0111222223344444455555555555555555555555555555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 017105 154 IKELRKQRDEGNAYFFQYRALLNEAKA 180 (377)
Q Consensus 154 i~~LRkq~dE~n~~fyq~r~~~~kare 180 (377)
...|...++..+..+..-...+.+++.
T Consensus 485 ~~~~k~~L~~~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 485 KEKLKSKLQNKNKELESLKEELQQAKA 511 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444444444
No 112
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.47 E-value=78 Score=27.74 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=10.0
Q ss_pred HHHHHHHHhCChhhHHHHHHHh
Q 017105 198 VEKYMTLWNNNKAFRDDYEKRL 219 (377)
Q Consensus 198 Ve~fm~lwn~~~~FR~dY~k~~ 219 (377)
|+-|+... ..-|.-|+.|-
T Consensus 126 ~~~Fl~~f---~~~R~~yH~R~ 144 (150)
T PF07200_consen 126 VDDFLKQF---KEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHH
Confidence 44454433 34566776653
No 113
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=69.19 E-value=44 Score=31.05 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhHH
Q 017105 58 KQILREIKQLEGTRE 72 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~ 72 (377)
|+.-.+|+.-+++|+
T Consensus 57 kqY~~~i~~AKkqRk 71 (161)
T TIGR02894 57 KQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555666666666665
No 114
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.56 E-value=1.1e+02 Score=28.97 Aligned_cols=102 Identities=19% Similarity=0.297 Sum_probs=68.9
Q ss_pred hhHHHHHHhhccchhhhHHhHHHHHHHHHhHH---HhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105 92 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLE---GKVKALDEE----IEALQQEVNDVAEKRDKAFANIKELRKQRDEG 164 (377)
Q Consensus 92 e~iqeqiK~~~~eLD~LKKE~dalr~kik~le---dk~~ai~~e----i~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~ 164 (377)
..++.++..+..+|+.++.|-..++..-.--. +++..-.++ |..-.++...+...-...-+....+-....+.
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~ 94 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDK 94 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666667766666654322222 222222333 44566777777777777788888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 017105 165 NAYFFQYRALLNEAKAMSVKKDVQGLKEL 193 (377)
Q Consensus 165 n~~fyq~r~~~~karela~~~~v~~l~~~ 193 (377)
+...|..+..+...+.++..+++.+-.++
T Consensus 95 ~~el~k~~~~l~~L~~L~~dknL~eReeL 123 (194)
T PF15619_consen 95 DEELLKTKDELKHLKKLSEDKNLAEREEL 123 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 99999999999999999998877765444
No 115
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.96 E-value=69 Score=26.54 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=24.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHH
Q 017105 66 QLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLE 123 (377)
Q Consensus 66 ~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~le 123 (377)
-++...+.|..+...++.....+++--.+-++.+.+..+++.++.+.+.+...|..+.
T Consensus 6 ~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 6 LIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3334444444444444322222222222233333444455555555555555554443
No 116
>PLN02320 seryl-tRNA synthetase
Probab=67.74 E-value=29 Score=37.42 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHH
Q 017105 63 EIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKI 119 (377)
Q Consensus 63 EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~ki 119 (377)
+|+-++...+.|..+...++- .-.+++--.+-++.+.+..+++.|+.+++.+...|
T Consensus 68 D~k~ir~n~~~v~~~l~~R~~-~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRNS-NANLELVLELYENMLALQKEVERLRAERNAVANKM 123 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666665542 11122222222223333344444555555544444
No 117
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=66.03 E-value=1.5e+02 Score=29.80 Aligned_cols=61 Identities=11% Similarity=0.230 Sum_probs=30.9
Q ss_pred hhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 017105 106 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 166 (377)
Q Consensus 106 D~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~ 166 (377)
..|+.+++..-.+.+...+-+...+.-+.+...+........-..=.+-..++...+..|.
T Consensus 212 ~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~ 272 (309)
T PF09728_consen 212 KELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNK 272 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555555555555555555555555555555555544444445544444444
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.98 E-value=1.6e+02 Score=30.03 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 017105 97 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 176 (377)
Q Consensus 97 qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ 176 (377)
-+-.+..+...-..++..+.+.|-.+..+.+.+-.+-..|...+.+..+..+..-.++..|+..+.+...-|.+....++
T Consensus 221 ELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 221 ELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455555566666666666666666667777777777777777777777777766666666666665555
Q ss_pred HH
Q 017105 177 EA 178 (377)
Q Consensus 177 ka 178 (377)
..
T Consensus 301 ~l 302 (306)
T PF04849_consen 301 TL 302 (306)
T ss_pred Hh
Confidence 43
No 119
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=65.35 E-value=1.1e+02 Score=27.77 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 017105 127 KALDEEIEALQQ 138 (377)
Q Consensus 127 ~ai~~ei~~L~e 138 (377)
..++..+..+..
T Consensus 133 ~~l~~~~~~~~~ 144 (191)
T PF04156_consen 133 DSLDESIKELEK 144 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 120
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=64.82 E-value=1.1e+02 Score=27.72 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=34.4
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
+.+|-.++.......-.+.-.....++.+..|..++..+...++..-..+..||.+.+...
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444556666777777777777666666666666665555
No 121
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=64.58 E-value=39 Score=28.24 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHH
Q 017105 55 SEEKQILREIKQLEG 69 (377)
Q Consensus 55 ~EEKk~L~EI~~L~~ 69 (377)
.|=+-++.||..|..
T Consensus 30 ~E~~~v~~EL~~l~~ 44 (105)
T cd00632 30 NENKKALEELEKLAD 44 (105)
T ss_pred HHHHHHHHHHHcCCC
Confidence 333556666666643
No 122
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=64.25 E-value=1.3e+02 Score=33.57 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=32.4
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017105 119 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR 172 (377)
Q Consensus 119 ik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r 172 (377)
|+.+...+..++..+..|..+...+...-+..+..+..+..+....+..|++..
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555556666666666666666666666666666666666544
No 123
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.09 E-value=1e+02 Score=27.13 Aligned_cols=88 Identities=18% Similarity=0.414 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHH
Q 017105 57 EKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 136 (377)
Q Consensus 57 EKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L 136 (377)
=..++.=|-.|=.+|.. .+..++.+.+.+..+..+++.+......+...+..++.++.........|
T Consensus 33 ~~~vin~i~~Ll~~~~r-------------~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 33 DVRVINCIYDLLQQRDR-------------DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666555543 34456666667777666666666666666655555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017105 137 QQEVNDVAEKRDKAFANIKEL 157 (377)
Q Consensus 137 ~eEl~a~~e~rd~Aye~i~~L 157 (377)
..++..+...-...-+++..|
T Consensus 100 ~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 100 QKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333333333
No 124
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=63.77 E-value=1.3e+02 Score=28.32 Aligned_cols=25 Identities=8% Similarity=-0.090 Sum_probs=18.3
Q ss_pred hhhHHHHHHHhHHHHHhhhhccCCC
Q 017105 209 KAFRDDYEKRLLQSLDMRQLSRDGR 233 (377)
Q Consensus 209 ~~FR~dY~k~~~~S~~~R~~t~DGR 233 (377)
-.+...|+..-++.++.++...++.
T Consensus 192 N~~~~~~y~~~~p~~~~~~q~le~~ 216 (251)
T cd07653 192 NKEQRQHYSTDLPQIFDKLQELDEK 216 (251)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 3566777777888888888777754
No 125
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=63.20 E-value=2.4 Score=46.06 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccchhhhHHhHHHHHHHHHhHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHH
Q 017105 102 GSDLDGVKKESQAVWAKISHLEGKVKAL--------DEEIEALQQEVNDVAEKRDKAFANI-KELRKQRDEGNAY 167 (377)
Q Consensus 102 ~~eLD~LKKE~dalr~kik~ledk~~ai--------~~ei~~L~eEl~a~~e~rd~Aye~i-~~LRkq~dE~n~~ 167 (377)
...++.+...+..+|..|....+..... ...|..+..|++.+.+.+......+ ..+|.++.+.|+.
T Consensus 227 ~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~ 301 (619)
T PF03999_consen 227 EEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDK 301 (619)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777776655444432 1357788888888888776655554 6677776666663
No 126
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=62.33 E-value=1.2e+02 Score=33.33 Aligned_cols=92 Identities=16% Similarity=0.301 Sum_probs=48.9
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 183 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~ 183 (377)
++++|+.+++.+...+ ..+..++..+...+..+.............|-.++ ....++-+|..
T Consensus 329 el~~l~~~l~~l~~~i-------~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~-----------~l~~k~~~lL~ 390 (594)
T PF05667_consen 329 ELEELQEQLDELESQI-------EELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL-----------KLKKKTVELLP 390 (594)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhc
Confidence 3444444444444444 34444444444444444444444333333333322 23345555555
Q ss_pred c--cCHHHHHHHHHHHHHHHHHHHhCChhhHH
Q 017105 184 K--KDVQGLKELSNSEVEKYMTLWNNNKAFRD 213 (377)
Q Consensus 184 ~--~~v~~l~~~~~~eVe~fm~lwn~~~~FR~ 213 (377)
. .++..|+.+|.+-..+.++|=+.=...|.
T Consensus 391 d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 391 DAEENIAKLQALVEASEQRLVELAQQWEKHRA 422 (594)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 58899999999988888877554455554
No 127
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=62.12 E-value=80 Score=25.20 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 017105 146 KRDKAFANIKELR 158 (377)
Q Consensus 146 ~rd~Aye~i~~LR 158 (377)
..++.-.++..|+
T Consensus 48 e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 48 ENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 128
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=61.78 E-value=1.7e+02 Score=31.32 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=32.3
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 120 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 120 k~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
...-+++....-.....+.++..+..+|.-+-..++.||+.
T Consensus 228 ~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 228 DQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Confidence 33334455555677888999999999999999999999986
No 129
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=61.51 E-value=43 Score=27.49 Aligned_cols=51 Identities=24% Similarity=0.411 Sum_probs=31.9
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Q 017105 113 QAVWAKISHLEGKVKALDEEIEALQQEVND---VAEKRDKAFANIKELRKQRDE 163 (377)
Q Consensus 113 dalr~kik~ledk~~ai~~ei~~L~eEl~a---~~e~rd~Aye~i~~LRkq~dE 163 (377)
-.+|+.|+.+.+|+.+++..++.|...+.. ++.+.|..-..+..|-.+..+
T Consensus 7 l~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~ 60 (75)
T PF05531_consen 7 LVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNE 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777777766554 555555555555555444333
No 130
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=61.33 E-value=79 Score=24.87 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=19.8
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 143 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~ 143 (377)
++........+|++.+.+...+..+|..|..++.++
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555443
No 131
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.26 E-value=1.1e+02 Score=26.55 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=15.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 123 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 157 (377)
Q Consensus 123 edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~L 157 (377)
++++.-+..+|..|..+...+.....+.-.+|+.|
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 132
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=61.23 E-value=83 Score=26.41 Aligned_cols=52 Identities=15% Similarity=0.368 Sum_probs=24.8
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 017105 115 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 175 (377)
Q Consensus 115 lr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~ 175 (377)
+.+.+..|..+...+..+++.++....++.++=.+|.++|+ |-+||..-|-+
T Consensus 29 Lss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD---------N~~~~~~~~~~ 80 (85)
T PRK09973 29 LASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD---------AQDYFDCLRCL 80 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHH
Confidence 33333333344444455555555555555554444444443 45666654433
No 133
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=61.23 E-value=85 Score=25.20 Aligned_cols=54 Identities=30% Similarity=0.310 Sum_probs=34.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 017105 122 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 175 (377)
Q Consensus 122 ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~ 175 (377)
+...+..-+..|..|+++...+...-...-..|++||.+..+.....-.....+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777777777777777776666665444444333
No 134
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.96 E-value=1.6e+02 Score=28.18 Aligned_cols=67 Identities=21% Similarity=0.423 Sum_probs=38.7
Q ss_pred HhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 99 KLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 99 K~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
..+..+|...-...+.+..++..|+..+..+...+.+|......+...-+..-..|..|..++.+..
T Consensus 123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 123 KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555666665556666666666666777776666654
No 135
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=60.74 E-value=1.5e+02 Score=27.81 Aligned_cols=83 Identities=17% Similarity=0.338 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCChhhHHHH
Q 017105 136 LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDY 215 (377)
Q Consensus 136 L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~fm~lwn~~~~FR~dY 215 (377)
|.+++..+...=+..-..|..|+.++.......-.....++. .-..+-.|.++|=.++|.||-.=-.||..|
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~--------ee~~~~~y~~~eh~rll~LWr~v~~lRr~f 157 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE--------EEENFNQYLSSEHSRLLSLWREVVALRRQF 157 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhcccccHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444444433333222222222 223466788899999999999999999999
Q ss_pred HHHhHHHHHhhhh
Q 017105 216 EKRLLQSLDMRQL 228 (377)
Q Consensus 216 ~k~~~~S~~~R~~ 228 (377)
.. +++.-.|=|
T Consensus 158 ~e--lr~~TerdL 168 (182)
T PF15035_consen 158 AE--LRTATERDL 168 (182)
T ss_pred HH--HHHHHHhhH
Confidence 77 666555543
No 136
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.59 E-value=2.9e+02 Score=31.18 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHHHhhhhhhhhHHHHH
Q 017105 59 QILREIKQLEGTREKVMANAAM-RAKIQESMGKKEDIQDQV 98 (377)
Q Consensus 59 k~L~EI~~L~~~R~~V~anaa~-~~ki~~s~~~ke~iqeqi 98 (377)
+-+.+|.+|+..|+.+...+.. .+++.+..+..+.+..++
T Consensus 576 ~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 576 QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666554432 233444444444444444
No 137
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=60.08 E-value=2.9e+02 Score=31.00 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=29.4
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105 114 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 170 (377)
Q Consensus 114 alr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq 170 (377)
.....++.+......++..+..|+.++..+...-..+-.....+.....+.......
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 280 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNT 280 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555566666666655555555444444444444444433333
No 138
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.03 E-value=1.1e+02 Score=25.95 Aligned_cols=36 Identities=14% Similarity=0.342 Sum_probs=16.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVK 99 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK 99 (377)
+..+...+.++.........+...+.+.+...+.+.
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~ 44 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444454444444444444444444444443
No 139
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=59.66 E-value=1.9e+02 Score=28.83 Aligned_cols=41 Identities=10% Similarity=0.248 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 017105 134 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 174 (377)
Q Consensus 134 ~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~ 174 (377)
..-..++..+......||.....|+....++...|=+.-..
T Consensus 287 ~~~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~ 327 (342)
T cd08915 287 NDSLDPREEALQDLEASYKKYLELKENLNEGSKFYNDLIEK 327 (342)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44566778888888889999999999998888655444333
No 140
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=59.46 E-value=1.2e+02 Score=26.48 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=34.7
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.+.|.++.+++++.+..|...-......+..|+.+++.+....+.--.....|...
T Consensus 32 ~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r 87 (107)
T PF09304_consen 32 QGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESR 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777766666666777777777777766666533333344443
No 141
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.91 E-value=2.3e+02 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=10.8
Q ss_pred HHhhcCcCchHHHHHHHHHHHHHHh
Q 017105 46 RIQHEIIPLSEEKQILREIKQLEGT 70 (377)
Q Consensus 46 ~i~h~sm~L~EEKk~L~EI~~L~~~ 70 (377)
+..|+.+.......+..+|+.|...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~~ 212 (498)
T TIGR03007 188 KQENGGILPDQEGDYYSEISEAQEE 212 (498)
T ss_pred HHhCcccCccchhhHHHHHHHHHHH
Confidence 3444444222223344555555444
No 142
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.84 E-value=75 Score=33.14 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 135 ALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 135 ~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
.|.++...+.++....-..+..|..
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 143
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.65 E-value=2.1e+02 Score=29.02 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhH----HHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHH---
Q 017105 59 QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDI----QDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE--- 131 (377)
Q Consensus 59 k~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~i----qeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~--- 131 (377)
++|..|..|+.+-+++..-..-+ +=.++.-++. .-.+..-..++..|+.+..-+......++..-..+.-
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQr---QfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQR---QFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 57888888888877664421111 1111111111 1112222334455555555555544444433333332
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 132 ----EIEALQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 132 ----ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
.+.-|..++..+.......-.++..++.++.
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655555555555555544
No 144
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=58.26 E-value=88 Score=30.22 Aligned_cols=16 Identities=25% Similarity=0.679 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhCCh
Q 017105 194 SNSEVEKYMTLWNNNK 209 (377)
Q Consensus 194 ~~~eVe~fm~lwn~~~ 209 (377)
....+++|.+|.-+|-
T Consensus 87 s~~DleRFT~Lyr~dH 102 (207)
T PF05546_consen 87 SPADLERFTELYRNDH 102 (207)
T ss_pred ChHHHHHHHHHHHhhh
Confidence 4556777777776654
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.85 E-value=2.2e+02 Score=30.74 Aligned_cols=97 Identities=20% Similarity=0.260 Sum_probs=58.6
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 183 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~ 183 (377)
+.++++-+.+.+.+.-+.++.++..++..+..++.++.+..+.=....+..+..+....+.+-.+-..+. +.
T Consensus 362 e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~--------s~ 433 (493)
T KOG0804|consen 362 EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALG--------SK 433 (493)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 3556666666666666667777777777777777777777766666666666666666555522111111 12
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhCChhhH
Q 017105 184 KKDVQGLKELSNSEVEKYMTLWNNNKAFR 212 (377)
Q Consensus 184 ~~~v~~l~~~~~~eVe~fm~lwn~~~~FR 212 (377)
...+.+|++ ||--.|-+.-+...|-
T Consensus 434 d~~I~dLqE----QlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 434 DEKITDLQE----QLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHH----HHHhHheehhhhhhhh
Confidence 234566665 5666777777766654
No 146
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=57.46 E-value=2.4e+02 Score=29.14 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=38.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHh
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISH 121 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ 121 (377)
+..|..+...| +.+....|.+....+..++.++.....+|..+.+.+..++..|..
T Consensus 235 ~~dl~~Q~~~v--n~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~ 290 (384)
T PF03148_consen 235 ANDLRAQADAV--NAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRD 290 (384)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665554 566777788888888888888877777777777777666654443
No 147
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.16 E-value=1.8e+02 Score=31.02 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Q 017105 143 VAEKRDKAFANIKELRKQRD---EGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRL 219 (377)
Q Consensus 143 ~~e~rd~Aye~i~~LRkq~d---E~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~fm~lwn~~~~FR~dY~k~~ 219 (377)
+...|=....+|.+|+.+.- .+....-.-|+.++-+-.++....--.|..+.-.+|...|..=+. +-++-.-
T Consensus 88 ~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~~r~~s~~ga~~~~~~-----d~~v~~~ 162 (459)
T KOG0288|consen 88 AENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALKDLGLKDLRRQSVDGAVPRTED-----DHFVEDT 162 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcCCCccccC-----chhhhcc
Confidence 33444445556666666533 334466666777777766666554445555555566655554332 3345555
Q ss_pred HHHHHhh
Q 017105 220 LQSLDMR 226 (377)
Q Consensus 220 ~~S~~~R 226 (377)
++|.+-+
T Consensus 163 lpS~~~~ 169 (459)
T KOG0288|consen 163 LPSRALF 169 (459)
T ss_pred cchhhhh
Confidence 5555544
No 148
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.85 E-value=3.3e+02 Score=30.68 Aligned_cols=97 Identities=13% Similarity=0.208 Sum_probs=58.2
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhhHHHHHHH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA---------------FANIKELRKQRDEGNAYFFQYR 172 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~A---------------ye~i~~LRkq~dE~n~~fyq~r 172 (377)
|-..++.=+..|..++.++......-..|..+|.+-+..|..+ ++.=..+|..+.++...+...|
T Consensus 479 L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr 558 (697)
T PF09726_consen 479 LVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLR 558 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHH
Confidence 4444444455566666677766666666666666666555443 1333457777777778888888
Q ss_pred HHHHHHHHHHhcc--CHHHHHHHH---HHHHHHHHHH
Q 017105 173 ALLNEAKAMSVKK--DVQGLKELS---NSEVEKYMTL 204 (377)
Q Consensus 173 ~~~~karela~~~--~v~~l~~~~---~~eVe~fm~l 204 (377)
+++....+-...- ++.+|+.+| ..++|-.|+-
T Consensus 559 ~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~a 595 (697)
T PF09726_consen 559 RELKQKEEQIRELESELQELRKYEKESEKDTEVLMSA 595 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 8887766544333 445666663 3355555543
No 149
>PLN02678 seryl-tRNA synthetase
Probab=55.95 E-value=68 Score=34.08 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=5.2
Q ss_pred HHHHHHHHHhHH
Q 017105 61 LREIKQLEGTRE 72 (377)
Q Consensus 61 L~EI~~L~~~R~ 72 (377)
|.+|-.|...|.
T Consensus 32 id~il~ld~~~r 43 (448)
T PLN02678 32 VDEVIALDKEWR 43 (448)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 150
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.29 E-value=3.3e+02 Score=30.22 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=33.1
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 017105 118 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSE 197 (377)
Q Consensus 118 kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~e 197 (377)
+|+.++=-+..-+.++..+..+|..+...-|.|.. +..|-+.++.+..+.- .++.+-.-+.++
T Consensus 381 ~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~------------~pe~~d~i~~le~e~~-----~y~de~~kaqae 443 (654)
T KOG4809|consen 381 KLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARM------------NPEFADQIKQLEKEAS-----YYRDECGKAQAE 443 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc------------ChhhHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 33333333334444455555555555544444322 2244444444433222 223333345667
Q ss_pred HHHHHHHHh
Q 017105 198 VEKYMTLWN 206 (377)
Q Consensus 198 Ve~fm~lwn 206 (377)
|++.+++..
T Consensus 444 vdrlLeilk 452 (654)
T KOG4809|consen 444 VDRLLEILK 452 (654)
T ss_pred HHHHHHHHH
Confidence 777777764
No 151
>PHA03395 p10 fibrous body protein; Provisional
Probab=54.71 E-value=36 Score=28.72 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=20.2
Q ss_pred HHHhhccchhhhHHhHHHHHHHHH---hHHHhHHHHHHHHHHHHHHHH
Q 017105 97 QVKLMGSDLDGVKKESQAVWAKIS---HLEGKVKALDEEIEALQQEVN 141 (377)
Q Consensus 97 qiK~~~~eLD~LKKE~dalr~kik---~ledk~~ai~~ei~~L~eEl~ 141 (377)
.|+..+..+|+|....+.+++++- ++.+++.+....+..++..++
T Consensus 12 dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~ 59 (87)
T PHA03395 12 DIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVD 59 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444455555555555555443 233334444444444433333
No 152
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.49 E-value=1.1e+02 Score=24.57 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=19.3
Q ss_pred HHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 109 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 154 (377)
Q Consensus 109 KKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i 154 (377)
+.+...++.+-..+.+....+..+...|+.++.+.....+.....+
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333344444444444444444444444444433
No 153
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.99 E-value=1.1e+02 Score=27.24 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=22.8
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 149 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~ 149 (377)
..||.|-..+|+..+..+.+.+.+.++..++..+..+++.+...-..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554455555555555554444444443333
No 154
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=53.86 E-value=2.1e+02 Score=27.58 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHH----HHHhHHHhHHHHHHHH
Q 017105 58 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWA----KISHLEGKVKALDEEI 133 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~----kik~ledk~~ai~~ei 133 (377)
..+|.++.++=++|+.+..+.. . .+.+.++.+-.++..++|....... .+..+-+.+...+..+
T Consensus 68 ~~iL~ete~~A~~~~~~ae~l~--~----------~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y 135 (237)
T cd07657 68 KEIMDSTDQLSKLIKQHAEALE--S----------GTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEY 135 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--h----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888887655422 1 1233344444445555554443332 2333344555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017105 134 EALQQEVNDVAEKRDKAFANI 154 (377)
Q Consensus 134 ~~L~eEl~a~~e~rd~Aye~i 154 (377)
..+-.+...+..+-++++...
T Consensus 136 ~~~~~e~e~Ar~k~e~a~~~~ 156 (237)
T cd07657 136 QKLLEDYKAAKSKFEEAVVKG 156 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666666666544
No 155
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=53.09 E-value=2.5e+02 Score=28.20 Aligned_cols=52 Identities=10% Similarity=0.224 Sum_probs=32.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017105 121 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYR 172 (377)
Q Consensus 121 ~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r 172 (377)
.+..++............++..+...-..+|.....|.....++...|-+..
T Consensus 269 ~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~ 320 (337)
T cd09234 269 EANAKYAPVRKALSETKQKRESTISSLIASYEAYEDLLKKSQKGIDFYKKLE 320 (337)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333333333556777777777777888888888888888875544443
No 156
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.54 E-value=52 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=9.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 017105 123 EGKVKALDEEIEALQQEVNDVAEKR 147 (377)
Q Consensus 123 edk~~ai~~ei~~L~eEl~a~~e~r 147 (377)
+.++..+...+..++.+...+.+..
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 157
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.53 E-value=1.2e+02 Score=25.82 Aligned_cols=58 Identities=16% Similarity=0.297 Sum_probs=29.0
Q ss_pred ccchhhhHHhHHHHHHHHHhHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 102 GSDLDGVKKESQAVWAKISHLEGKVKAL--DEEIEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 102 ~~eLD~LKKE~dalr~kik~ledk~~ai--~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
+.+++.|...++.....+..++.++..+ ..++..|+-++..++...+..-+.++.+..
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554 455555555555555555554444444433
No 158
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=52.42 E-value=1.8e+02 Score=27.05 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=27.4
Q ss_pred HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 017105 97 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 143 (377)
Q Consensus 97 qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~ 143 (377)
++-..+..+++++|.+..++..|..|+..++-+...+..+..+++-+
T Consensus 59 dlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf 105 (157)
T COG3352 59 DLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPF 105 (157)
T ss_pred hcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33334455666777777777666666666666665555554444433
No 159
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.00 E-value=65 Score=23.72 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 122 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 122 ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
++-.+..++..+++|..+.+.+....+..-..+..|..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555443
No 160
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=51.81 E-value=1.1e+02 Score=23.50 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhC
Q 017105 147 RDKAFANIKELRKQRDEGNA-YFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNN 207 (377)
Q Consensus 147 rd~Aye~i~~LRkq~dE~n~-~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~fm~lwn~ 207 (377)
.+..|...+.+...++.... ++-.....+.+++.|+...+... ...++..++..|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~----~~~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 11 CDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWKE----AAEEIKELQQEWKE 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHH
Confidence 34444444444444444433 56666677778888888777333 34456667777754
No 161
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.59 E-value=2.2e+02 Score=27.64 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred HHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcC-----ch-HHHHHHHHHHHHHHhHHHH
Q 017105 10 PLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIP-----LS-EEKQILREIKQLEGTREKV 74 (377)
Q Consensus 10 ~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~-----L~-EEKk~L~EI~~L~~~R~~V 74 (377)
+||++++.+- .++...-.-+--||+.|+.+..+|...-=. |. .=-+||++=+.++.+|..+
T Consensus 16 sL~dai~~v~----~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L 82 (218)
T KOG1655|consen 16 SLQDAIDSVN----KRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSL 82 (218)
T ss_pred hHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777662 222111122234566666666666543211 11 1135666767777777655
No 162
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.95 E-value=3.5e+02 Score=29.14 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHH---HhhcCcCchHHHHHHHHHHHHHHhHHHH
Q 017105 33 EEELDDLIRSLQYR---IQHEIIPLSEEKQILREIKQLEGTREKV 74 (377)
Q Consensus 33 ~eeiD~~I~~Le~~---i~h~sm~L~EEKk~L~EI~~L~~~R~~V 74 (377)
..++..++..|+++ ++.-.+...|+..+-.+.+.|...-+..
T Consensus 184 ~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~ 228 (563)
T TIGR00634 184 EQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLR 228 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHH
Confidence 45667777777777 4455566666666766666666554433
No 163
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.75 E-value=80 Score=30.95 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=45.8
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 158 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LR 158 (377)
|.-|..++|-.|.+..+|++.+......+..|+.|++.+...=-+.|+.++=|.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566899999999999999999999999999999999888877777777776553
No 164
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=50.11 E-value=1.7e+02 Score=25.44 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=53.6
Q ss_pred hHHHHHHhhccchhhhHHhHHHHH-----------HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 93 DIQDQVKLMGSDLDGVKKESQAVW-----------AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 161 (377)
Q Consensus 93 ~iqeqiK~~~~eLD~LKKE~dalr-----------~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~ 161 (377)
.+...++-+..+|++|.++++.+- ..++.++.-+..++..+..|+.-..-+..+.-.-|+.+..+..++
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L 109 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQL 109 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455555555555555554432 356677778888888999999999999999999999999988877
Q ss_pred hhhhH
Q 017105 162 DEGNA 166 (377)
Q Consensus 162 dE~n~ 166 (377)
.-.+.
T Consensus 110 ~rl~~ 114 (132)
T PF10392_consen 110 ERLHQ 114 (132)
T ss_pred HHHHH
Confidence 66553
No 165
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.00 E-value=4.2e+02 Score=29.77 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCH
Q 017105 132 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDV 187 (377)
Q Consensus 132 ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v 187 (377)
++..++.+...+.......+..+..|...+... .+.+.|..+|+.
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l-----------~k~~~lE~sG~g 519 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAEL-----------RKMRKLELSGKG 519 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhhcCCC
Confidence 344444444444444444444555454443322 344556666764
No 166
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.96 E-value=3.7e+02 Score=29.14 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=10.6
Q ss_pred HhHHHHHHHHHhHHHhHHHHHHHHHHHH
Q 017105 110 KESQAVWAKISHLEGKVKALDEEIEALQ 137 (377)
Q Consensus 110 KE~dalr~kik~ledk~~ai~~ei~~L~ 137 (377)
+..+.+..++.++.++++.+.+++..+.
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 167
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.94 E-value=1.1e+02 Score=28.15 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 017105 126 VKALDEEIEALQ 137 (377)
Q Consensus 126 ~~ai~~ei~~L~ 137 (377)
+.+++++...|+
T Consensus 177 ~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 177 IEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 168
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.57 E-value=1.8e+02 Score=25.38 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 017105 136 LQQEVNDVA 144 (377)
Q Consensus 136 L~eEl~a~~ 144 (377)
|..++..+.
T Consensus 64 lr~e~~~~~ 72 (132)
T PF07926_consen 64 LREELQELQ 72 (132)
T ss_pred HHHHHHHHH
Confidence 333333333
No 169
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=49.22 E-value=1.6e+02 Score=24.62 Aligned_cols=38 Identities=13% Similarity=0.340 Sum_probs=21.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLM 101 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~ 101 (377)
+.+++..+.+....+.....+.....+.+...+.+..+
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444445555555555666666666666655555543
No 170
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.11 E-value=1.8e+02 Score=27.72 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 129 LDEEIEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 129 i~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
++.+...|..++..+..+.+.+-..+..+..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 171
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=48.54 E-value=1.4e+02 Score=25.07 Aligned_cols=55 Identities=31% Similarity=0.411 Sum_probs=43.8
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD--KAFANIKELR 158 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd--~Aye~i~~LR 158 (377)
++|.|..+.+.+.+++.++...+...+..+..-++|-..++++.| ..|..++=||
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~~~~~~~~~ 81 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLR 81 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 567778888888888888888888888888888888888888886 4567666665
No 172
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=48.50 E-value=1.6e+02 Score=24.64 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHH
Q 017105 189 GLKELSNSEVEKYMTLWNNNKAFRDDY 215 (377)
Q Consensus 189 ~l~~~~~~eVe~fm~lwn~~~~FR~dY 215 (377)
+...|.+.||..||....+..++|.-|
T Consensus 59 e~~~lT~~E~~~ll~~~~~~~~~~~~~ 85 (86)
T PF12958_consen 59 EPKDLTNDEFYELLEFLFHLPEVQEAL 85 (86)
T ss_pred cchhcCHHHHHHHHHHHHcCHHHHHhh
Confidence 345677889999999998888887654
No 173
>PRK15396 murein lipoprotein; Provisional
Probab=48.43 E-value=1.2e+02 Score=25.05 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 124 GKVKALDEEIEALQQEVNDVAEKRDKAFANIK 155 (377)
Q Consensus 124 dk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~ 155 (377)
.+...+..+++.+.....++.++=.+|..+|+
T Consensus 39 ~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 39 AKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 174
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=48.41 E-value=2.3e+02 Score=26.42 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=22.8
Q ss_pred HhhhhhHHHHHHhhhhccccccCCCCCCCHHHHH
Q 017105 4 KRKEMEPLHQALGKLRTTNNARSGGICSSEEELD 37 (377)
Q Consensus 4 K~~Em~~lq~aL~Klr~~~~A~~~~~~~S~eeiD 37 (377)
.+.++-.|++.|+..=....|+..|.|.--++|=
T Consensus 31 tR~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly 64 (189)
T PF10211_consen 31 TRQDVIQLQEWLDKMLQQRQARETGICPVREELY 64 (189)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 3567778888895333345677788888666554
No 175
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.26 E-value=1.1e+02 Score=28.63 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=56.1
Q ss_pred hhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHH
Q 017105 100 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA----YFFQYRALL 175 (377)
Q Consensus 100 ~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~----~fyq~r~~~ 175 (377)
.+...++.|.++++.++..+..+..++......... ..++..+.+.....-..+..|..++..... .+-+.+..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~-~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~ 144 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE-SEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEI 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344556777778888888787777777777543211 255666666666666666666666653322 344445555
Q ss_pred HHHHHHHhcc--CHHHHHHHHHH
Q 017105 176 NEAKAMSVKK--DVQGLKELSNS 196 (377)
Q Consensus 176 ~karela~~~--~v~~l~~~~~~ 196 (377)
..+++.|..= |+--|+.||.+
T Consensus 145 ~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 145 KIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555544432 55555555554
No 176
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.24 E-value=1.1e+02 Score=32.03 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=8.9
Q ss_pred ccchhhhHHhHHHHHHHHH
Q 017105 102 GSDLDGVKKESQAVWAKIS 120 (377)
Q Consensus 102 ~~eLD~LKKE~dalr~kik 120 (377)
..+++.|+.+++.+...|+
T Consensus 41 ~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 41 QTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444443
No 177
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=48.24 E-value=2.7e+02 Score=27.12 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHH
Q 017105 35 ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQA 114 (377)
Q Consensus 35 eiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~da 114 (377)
+--..|..||.++ |++.+-+..|-+.|..+..+.+.+++.-..+|.-+.. +.+..-|. .+-.
T Consensus 26 ~k~~~ie~LE~qL----------k~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~----~~Ls~als----~lae 87 (234)
T cd07665 26 EKLQEVECEEQRL----------RKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDN----TALSRALS----QLAE 87 (234)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHH----HHHH
Confidence 4555677777776 6788999999999999999999999866666655431 01000011 1111
Q ss_pred HHHHHHhHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------HHHHHHHHH
Q 017105 115 VWAKISHLEGK--------VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN------------AYFFQYRAL 174 (377)
Q Consensus 115 lr~kik~ledk--------~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n------------~~fyq~r~~ 174 (377)
+..+|..+.++ +...=.++-.|..-.+.+-..|.++|..++.+-..+..+. +.+.+....
T Consensus 88 v~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~E 167 (234)
T cd07665 88 VEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDE 167 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 11122222111 1112234555555556666666666666655543322221 234444444
Q ss_pred HHHHHHHH--hccCHHHHHHHHHHHHHHHHHHHhCChhhHH
Q 017105 175 LNEAKAMS--VKKDVQGLKELSNSEVEKYMTLWNNNKAFRD 213 (377)
Q Consensus 175 ~~karela--~~~~v~~l~~~~~~eVe~fm~lwn~~~~FR~ 213 (377)
++.+..-+ ++.+-..+-..+..||++|-.- .-..||.
T Consensus 168 v~e~e~k~~~a~~~fe~is~~ik~El~rFe~e--r~~Dfk~ 206 (234)
T cd07665 168 IAEWESRVTQYERDFERISATVRKEVIRFEKE--KSKDFKN 206 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 44333222 3446667888889999999653 3345665
No 178
>PRK11546 zraP zinc resistance protein; Provisional
Probab=48.21 E-value=1.5e+02 Score=27.12 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 017105 125 KVKALDEEIEALQQEVND 142 (377)
Q Consensus 125 k~~ai~~ei~~L~eEl~a 142 (377)
++.++..+|..|+.++.+
T Consensus 90 kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 90 KINAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 179
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=47.62 E-value=1.1e+02 Score=29.64 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 122 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 122 ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
..+++..-+.++..|..=+..+..+||+|.+.++.|.-
T Consensus 24 A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 24 ANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888888888888888888888873
No 180
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.39 E-value=1.7e+02 Score=26.52 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=6.1
Q ss_pred hccCCCCCCCCCC
Q 017105 228 LSRDGRIRNPDEK 240 (377)
Q Consensus 228 ~t~DGR~~~pde~ 240 (377)
++-|| ..|-|++
T Consensus 113 l~~dg-~~Gldeq 124 (155)
T PF06810_consen 113 LDDDG-LKGLDEQ 124 (155)
T ss_pred eCCCc-cccHHHH
Confidence 34455 5555554
No 181
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.18 E-value=45 Score=35.79 Aligned_cols=16 Identities=19% Similarity=0.084 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 017105 146 KRDKAFANIKELRKQR 161 (377)
Q Consensus 146 ~rd~Aye~i~~LRkq~ 161 (377)
+.++.-.++..|+.|.
T Consensus 105 KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 105 RIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344444433
No 182
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=47.12 E-value=2.4e+02 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 133 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 133 i~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
|+.+.-+++.+...++++-.+...--..++++|
T Consensus 93 ID~vNreLkpl~~~cqKKEkEykealea~nEkn 125 (159)
T PF04949_consen 93 IDSVNRELKPLGQSCQKKEKEYKEALEAFNEKN 125 (159)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 183
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=47.00 E-value=2.7e+02 Score=26.73 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=34.0
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 017105 118 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 180 (377)
Q Consensus 118 kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kare 180 (377)
.-..++.....+-.+|..|+++-..+...++..-..+..|-.+-.......|.+-..+.....
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da 151 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDA 151 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555666666666666666666555555555555555555555555544333
No 184
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=46.54 E-value=22 Score=25.80 Aligned_cols=44 Identities=5% Similarity=0.031 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCCCCCCCC
Q 017105 195 NSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPD 238 (377)
Q Consensus 195 ~~eVe~fm~lwn~~~~FR~dY~k~~~~S~~~R~~t~DGR~~~pd 238 (377)
..++..|+..-.+|.+||..+..|-.+.-...+....|-.-.++
T Consensus 3 ~~~l~~Fl~~~~~d~~l~~~l~~~~~~~e~~~lA~~~Gy~ft~~ 46 (49)
T PF07862_consen 3 IESLKAFLEKVKSDPELREQLKACQNPEEVVALAREAGYDFTEE 46 (49)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHcCCCCCHH
Confidence 56799999999999999999999877777777777777655543
No 185
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=46.44 E-value=3e+02 Score=27.10 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHHHH
Q 017105 63 EIKQLEGTREKVMANAA 79 (377)
Q Consensus 63 EI~~L~~~R~~V~anaa 79 (377)
||+.|+.+=+.+..+..
T Consensus 44 e~~eLk~qnkli~K~l~ 60 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLS 60 (230)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 78888888776655444
No 186
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.36 E-value=2.1e+02 Score=25.23 Aligned_cols=43 Identities=26% Similarity=0.399 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 017105 126 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 168 (377)
Q Consensus 126 ~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~f 168 (377)
+..+..++..|+..++.+-+-..+.-+...+|+........=|
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555566666666555444333
No 187
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=46.30 E-value=2.9e+02 Score=26.83 Aligned_cols=48 Identities=23% Similarity=0.345 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhh
Q 017105 34 EELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKK 91 (377)
Q Consensus 34 eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~k 91 (377)
++.-.-|..||.++ |++.+-+..|-+.|..+..+.+.++..-..+|.-
T Consensus 25 ~~~k~yi~~Le~~L----------k~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~ 72 (234)
T cd07664 25 EEKQQQFENLDQQL----------RKLHASVESLVCHRKELSANTAAFAKSAAMLGNS 72 (234)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566677777777 6788999999999999999988888866666554
No 188
>PTZ00464 SNF-7-like protein; Provisional
Probab=45.96 E-value=2.8e+02 Score=26.61 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 017105 36 LDDLIRSLQYRI 47 (377)
Q Consensus 36 iD~~I~~Le~~i 47 (377)
++.++..|+.+|
T Consensus 23 l~~r~~~l~kKi 34 (211)
T PTZ00464 23 IGGRSEVVDARI 34 (211)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 189
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.48 E-value=1.3e+02 Score=26.18 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=22.1
Q ss_pred hhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 017105 107 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA 144 (377)
Q Consensus 107 ~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~ 144 (377)
.|.+.++.+...|+.++.+...+...+..++..+..+.
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556666666666666666666665555544
No 190
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=44.75 E-value=1.6e+02 Score=27.94 Aligned_cols=70 Identities=30% Similarity=0.489 Sum_probs=42.2
Q ss_pred ccchhhhHHhHHHHHHHHHhHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 017105 102 GSDLDGVKKESQAVWAKISHLEGKVKA-----LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 176 (377)
Q Consensus 102 ~~eLD~LKKE~dalr~kik~ledk~~a-----i~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ 176 (377)
+.+|-++++++..++-+|..|..+... ++.++.+|.-+|+++...+.. ..+.=||+.-+-+.
T Consensus 104 ~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~-------------~emeLyyecMkkL~ 170 (181)
T PF04645_consen 104 NLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREI-------------REMELYYECMKKLA 170 (181)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHh
Confidence 456666777777777777666655544 445677777777777666543 23445566555555
Q ss_pred HHHHHHhc
Q 017105 177 EAKAMSVK 184 (377)
Q Consensus 177 karela~~ 184 (377)
+|-+...+
T Consensus 171 ~a~~~esk 178 (181)
T PF04645_consen 171 KAHEVESK 178 (181)
T ss_pred hhhhhhhc
Confidence 55554433
No 191
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=44.50 E-value=3.4e+02 Score=27.25 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=28.9
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 158 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LR 158 (377)
.|...+.++......++..+.++..+...+......+..+..++-+....+..++
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555444444433
No 192
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.38 E-value=1.7e+02 Score=26.80 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 017105 132 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 168 (377)
Q Consensus 132 ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~f 168 (377)
+...+.+|...+..+..++-.++..|++|-...+.+|
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444445555555556666666777766655544
No 193
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.19 E-value=3.7e+02 Score=27.57 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 017105 126 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 166 (377)
Q Consensus 126 ~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~ 166 (377)
+.+++..+..|+-++.++.+...++..+.+..+...+-.|.
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ 175 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNH 175 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666655555555555555554
No 194
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=43.80 E-value=3.5e+02 Score=27.17 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 017105 58 KQILREIKQLEGT 70 (377)
Q Consensus 58 Kk~L~EI~~L~~~ 70 (377)
+.++.-++.|+..
T Consensus 152 ~e~~~~l~DLesa 164 (269)
T PF05278_consen 152 KEMIATLKDLESA 164 (269)
T ss_pred HHHHHHHHHHHHc
Confidence 4466666666544
No 195
>PRK11281 hypothetical protein; Provisional
Probab=43.77 E-value=5e+02 Score=30.98 Aligned_cols=146 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHh
Q 017105 32 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKE 111 (377)
Q Consensus 32 S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE 111 (377)
|.++|...|..|.. ++. ...+++.+ |..|+.+-.-+-.....+.+..+.-..-...-.+++....+|+.+++.
T Consensus 37 ~~~~iq~~l~~~~~---~~~--~~~~~k~~--~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~ 109 (1113)
T PRK11281 37 TEADVQAQLDALNK---QKL--LEAEDKLV--QQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109 (1113)
T ss_pred CHHHHHHHHHHhhc---CCC--CchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 017105 112 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK 185 (377)
Q Consensus 112 ~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~ 185 (377)
.+......- ...-+..+...+..+..++.........+...+-.++.+.....+..+++++.+...+.....+
T Consensus 110 ~~~~~~~~~-~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~ 182 (1113)
T PRK11281 110 NDEETRETL-STLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGG 182 (1113)
T ss_pred ccccccccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCC
No 196
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=43.61 E-value=3.5e+02 Score=27.02 Aligned_cols=57 Identities=16% Similarity=0.362 Sum_probs=28.1
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDE-----------EIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~-----------ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.+..|..+++++.++|....+.+..+.. .|..|.-++..+.+..+.=..++..++..
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~ 149 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQM 149 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444443331 45555555555555555544444444443
No 197
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=43.08 E-value=2.8e+02 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=12.8
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEA 135 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~ 135 (377)
.++++..+|.+|+.++-.++.+...+..
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqK 109 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQK 109 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444444444444443333
No 198
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.01 E-value=3e+02 Score=29.76 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017105 136 LQQEVNDVAEKRDKAFANIKEL 157 (377)
Q Consensus 136 L~eEl~a~~e~rd~Aye~i~~L 157 (377)
++.+...+...++.....++.|
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 199
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=42.95 E-value=3.7e+02 Score=27.13 Aligned_cols=113 Identities=13% Similarity=0.295 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-------HHhhhhh------hhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHH
Q 017105 58 KQILREIKQLEGTREKVMANAAMRAK-------IQESMGK------KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEG 124 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~~V~anaa~~~k-------i~~s~~~------ke~iqeqiK~~~~eLD~LKKE~dalr~kik~led 124 (377)
+.+|.+++.|+..|..+..-. +.. +-..+.. ..-..+.+ +..++.++..++.-...-..+..
T Consensus 194 r~~l~~l~~lk~eR~~~~~~L--k~~~dDI~~~ll~~~~~~~~~~~e~l~~~eL---~k~f~~~~~~i~~~~~~Q~~ll~ 268 (339)
T cd09235 194 RQLMEQVETIKAEREVIESEL--KSATFDMKSKFLSALAQDGAINEEAISVEEL---DRVYGPLQKQVQESLSRQESLLA 268 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhcccccHHHHHHHHHhcCCccHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999988774322 111 0000000 01111122 11233344444333333333333
Q ss_pred hHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 017105 125 KVKALDEEI------EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 175 (377)
Q Consensus 125 k~~ai~~ei------~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~ 175 (377)
.+...+..+ ..-..++..+......||.....|.....++...|=+.-..+
T Consensus 269 ~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~~~ 325 (339)
T cd09235 269 NIQVAHQEFSKEKQSNSGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTEIL 325 (339)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344333333 233446677777788888888888888888875444443333
No 200
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=42.90 E-value=2e+02 Score=32.12 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=49.5
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
||.++....+.+.+.|.+++.++.+++..|..-+.++.++......+--...+|+.+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 566777788888888999999999999999999999999999998888888888876
No 201
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.62 E-value=3.2e+02 Score=26.32 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCc
Q 017105 29 ICSSEEELDDLIRSLQYRIQHEII 52 (377)
Q Consensus 29 ~~~S~eeiD~~I~~Le~~i~h~sm 52 (377)
....+..+...|..+-.++.+.+.
T Consensus 92 L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 92 LEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344455566666666666644443
No 202
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.45 E-value=89 Score=28.49 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=21.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 119 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 119 ik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
...|++++.+.+.++++|..--+-=.+...++..+|..||.++++..
T Consensus 63 t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 63 TSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333333345555555555555554444
No 203
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=42.28 E-value=2e+02 Score=30.09 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=8.6
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 017105 64 IKQLEGTREKVMANAAMRA 82 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ 82 (377)
|+-++...+.|..+...++
T Consensus 4 ik~ir~n~~~v~~~l~~R~ 22 (418)
T TIGR00414 4 RKLLRNNPDLVKESLKARG 22 (418)
T ss_pred HHHHHhCHHHHHHHHHhcC
Confidence 3334444444555444443
No 204
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.00 E-value=3.2e+02 Score=26.16 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=25.6
Q ss_pred hhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 92 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD 148 (377)
Q Consensus 92 e~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd 148 (377)
..++.++.....+-..+..+...+...+..++.....+...+.++..++..+....+
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444443333
No 205
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=41.94 E-value=3.7e+02 Score=29.67 Aligned_cols=211 Identities=18% Similarity=0.203 Sum_probs=126.5
Q ss_pred HHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 017105 10 PLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMG 89 (377)
Q Consensus 10 ~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~ 89 (377)
|+++-|++++.++=- | -|..-.+ .-.+=-.-+.+.+++=+||. |=+-..|--. ..+...+..+.+.-.
T Consensus 44 Pv~dEi~kVK~L~L~---G--QTe~~Fe-~Wrq~W~di~~~~fadvEE~--lfeAE~~~dk----frF~kA~~~i~~ie~ 111 (570)
T COG4477 44 PVNDEISKVKKLHLT---G--QTETKFE-EWRQKWDDIVTNSFADVEEH--LFEAEALADK----FRFNKAKHEIDDIEQ 111 (570)
T ss_pred CchhHHHHHhcCccc---C--ccHHHHH-HHHHHHHHHHHhhcccHHHH--HHHHHHhhhh----hhhHHhhhhHhhHHH
Confidence 566777777655431 1 1222222 12222224566677777764 3333333222 112222444455555
Q ss_pred hhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--H
Q 017105 90 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA--Y 167 (377)
Q Consensus 90 ~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~--~ 167 (377)
+-..+.+++..+..+|..|...-..=+..+..+.+.+..++.++-.=...+-.+....++-.+.|...-.|++..++ +
T Consensus 112 ~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd 191 (570)
T COG4477 112 QLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTSSGD 191 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 55666667777666777777766666777777778888888887777777888888888888899999999999988 8
Q ss_pred HHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHH-----------------HHhCChhhHHHHHHHhHHHHHh
Q 017105 168 FFQYRALLNEAKAMSVK-----KDVQGLKELSNSEVEKYMT-----------------LWNNNKAFRDDYEKRLLQSLDM 225 (377)
Q Consensus 168 fyq~r~~~~karela~~-----~~v~~l~~~~~~eVe~fm~-----------------lwn~~~~FR~dY~k~~~~S~~~ 225 (377)
|-+-+.++-.+.+.... ..|-.|=.-|.++|=.=|. .-+=|+.|=.-|...---|-..
T Consensus 192 ~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l 271 (570)
T COG4477 192 YIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELL 271 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHH
Confidence 88999888888774332 2455555555555533222 2233444444444444455555
Q ss_pred hhhccCC
Q 017105 226 RQLSRDG 232 (377)
Q Consensus 226 R~~t~DG 232 (377)
++|..||
T Consensus 272 ~~Leld~ 278 (570)
T COG4477 272 TQLELDE 278 (570)
T ss_pred HHhhhhh
Confidence 6666665
No 206
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=41.87 E-value=6.7e+02 Score=29.85 Aligned_cols=134 Identities=19% Similarity=0.164 Sum_probs=64.1
Q ss_pred HHhhccchhhhHHhHHHHHHHHHh---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 017105 98 VKLMGSDLDGVKKESQAVWAKISH---------LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK-------ELRKQR 161 (377)
Q Consensus 98 iK~~~~eLD~LKKE~dalr~kik~---------ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~-------~LRkq~ 161 (377)
+|.+-.+|+.||.++.+.|.+.-- .+.+..+....|..|..++.++.......-+... .|..+.
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455667888888888888865321 1222233333444444444444444333333332 555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH-HHHHHhCChhhHHHHHHH--hHHHHHhhhhccC
Q 017105 162 DEGNAYFFQYRALLNEAKAMSVKK-DVQGLKELSNSEVEK-YMTLWNNNKAFRDDYEKR--LLQSLDMRQLSRD 231 (377)
Q Consensus 162 dE~n~~fyq~r~~~~karela~~~-~v~~l~~~~~~eVe~-fm~lwn~~~~FR~dY~k~--~~~S~~~R~~t~D 231 (377)
+......++.-..+.-..+.-.+- ..=.+.++..++.+. =|.+---+..||..|... -++++..++...|
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 555556665555554443332222 221223333322221 122223366777777542 3455665554433
No 207
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=41.81 E-value=6.4e+02 Score=29.61 Aligned_cols=122 Identities=13% Similarity=0.151 Sum_probs=61.5
Q ss_pred hhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 90 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE-------EIEALQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 90 ~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~-------ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
...-+...++.+..++-.|+-.+-..+-+...+.+++..+.+ ++.+|++-+.-+....+......-++-.|.|
T Consensus 317 atkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 317 ATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555544 4555666666666666665555555666666
Q ss_pred hhhHHHHHHHHH----------HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCChhhHH
Q 017105 163 EGNAYFFQYRAL----------LNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRD 213 (377)
Q Consensus 163 E~n~~fyq~r~~----------~~karela~~~~v~~l~~~~~~eVe~fm~lwn~~~~FR~ 213 (377)
+..+..|-+--- +.+|.+-+. -.+.=..-+.-|.+.|-.|..+-+.=|.
T Consensus 397 elKn~if~~e~~~~dhe~~kneL~~a~ekld--~mgthl~mad~Q~s~fk~Lke~aegsrr 455 (1265)
T KOG0976|consen 397 ELKNHIFRLEQGKKDHEAAKNELQEALEKLD--LMGTHLSMADYQLSNFKVLKEHAEGSRR 455 (1265)
T ss_pred HHHHhhhhhhhccchhHHHHHHHHHHHHHHH--HHhHHHHHHHHHHhhHHHHHHhhhhhHh
Confidence 666654443222 333322111 1111123344556666666665554443
No 208
>PRK15396 murein lipoprotein; Provisional
Probab=41.39 E-value=1.3e+02 Score=24.82 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=22.3
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 149 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~ 149 (377)
+|.|..+.+.+..++.++......++..+..-.+|-..++.+.|-
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555555555555555543
No 209
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=41.04 E-value=9 Score=33.81 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCH
Q 017105 164 GNAYFFQYRALLNEAKAMSVKKDV 187 (377)
Q Consensus 164 ~n~~fyq~r~~~~karela~~~~v 187 (377)
.....-+-|..+..||+.|.+-.|
T Consensus 88 ls~nI~~IrelI~qAR~~An~IkV 111 (138)
T PF06009_consen 88 LSRNISRIRELIAQARDAANRIKV 111 (138)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhheee
Confidence 445555556667777777665443
No 210
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.85 E-value=5.4e+02 Score=29.14 Aligned_cols=63 Identities=24% Similarity=0.439 Sum_probs=31.8
Q ss_pred hhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 91 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 91 ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
+..|+.+++. |+.+.+.+-..|..+.++.+.++..-..|.+.+..+.+........++.+...
T Consensus 560 r~ei~~rv~~-------Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 560 REEIQRRVKL-------LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554 44444444445555555555555555555555555555555555545444443
No 211
>PLN02678 seryl-tRNA synthetase
Probab=40.31 E-value=1.6e+02 Score=31.34 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=27.6
Q ss_pred hhccchhhhHHhHHHHHHHHHhHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 100 LMGSDLDGVKKESQAVWAKISHLEGKVKALD---EEIEALQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 100 ~~~~eLD~LKKE~dalr~kik~ledk~~ai~---~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
.++.+.-.+..+++.++...+.++..+..+. .+...|.++...+.++....-..+..|..++.
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333434444444444444444444443321 23344444444444444444444444444433
No 212
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.99 E-value=3.3e+02 Score=25.73 Aligned_cols=128 Identities=17% Similarity=0.279 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----hhhhhHHHHHHhhccchhhhHHh
Q 017105 36 LDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESM----GKKEDIQDQVKLMGSDLDGVKKE 111 (377)
Q Consensus 36 iD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~----~~ke~iqeqiK~~~~eLD~LKKE 111 (377)
|...|..|++.++ .|.-|-++|+.+..- +-+.+..|.+..+.+.+-+ .+-..+.++++-.......+...
T Consensus 17 L~n~l~elq~~l~----~l~~ENk~Lk~lq~R--q~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 17 LQNELAELQRKLQ----ELRKENKTLKQLQKR--QEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHH--HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555544 356688888877543 2222444433333333322 12222222222222222222222
Q ss_pred HHHHHHHHHhHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 017105 112 SQAVWAKISHLEGKVKALDE--------EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 169 (377)
Q Consensus 112 ~dalr~kik~ledk~~ai~~--------ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fy 169 (377)
+......|-.+.+.+..+.. +...|+.++..+...-+.+...|..|..+..-.++.|-
T Consensus 91 lk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~ 156 (194)
T PF15619_consen 91 LKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFR 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 22222233333333333332 46778888888999999999999999998887776654
No 213
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=39.96 E-value=2.4e+02 Score=24.19 Aligned_cols=26 Identities=15% Similarity=-0.051 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 017105 151 FANIKELRKQRDEGNAYFFQYRALLN 176 (377)
Q Consensus 151 ye~i~~LRkq~dE~n~~fyq~r~~~~ 176 (377)
......|...+...+..|........
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~ 112 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYR 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777766665554443
No 214
>PHA03395 p10 fibrous body protein; Provisional
Probab=39.84 E-value=1.4e+02 Score=25.20 Aligned_cols=42 Identities=21% Similarity=0.372 Sum_probs=24.7
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 017105 113 QAVWAKISHLEGKVKALDEEIEALQQEVN---DVAEKRDKAFANI 154 (377)
Q Consensus 113 dalr~kik~ledk~~ai~~ei~~L~eEl~---a~~e~rd~Aye~i 154 (377)
..+|+-|+++.+|+.+++..+..|+..+. +++++.|..-+.+
T Consensus 7 l~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~L 51 (87)
T PHA03395 7 LLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASL 51 (87)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHH
Confidence 34667777777777777776666665543 4444444433333
No 215
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=39.21 E-value=57 Score=27.84 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHhcc
Q 017105 132 EIEALQQEVNDVAEKRDKAFANIKELRKQRD---EGNAYFFQYRALLNEAKAMSVKK 185 (377)
Q Consensus 132 ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d---E~n~~fyq~r~~~~karela~~~ 185 (377)
.-.+|.+.|.+-...+|.+|+...+|+.++. +--..|++.......+.+...+.
T Consensus 36 d~rsLye~LqenK~~Kq~efeE~~K~kn~~r~LDedE~eFLd~v~~~~~~~E~~~~~ 92 (102)
T PF10187_consen 36 DGRSLYERLQENKAAKQEEFEEKHKLKNQFRGLDEDEIEFLDEVEEKKRAEERQRKR 92 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999954 44558999988888877755443
No 216
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=39.04 E-value=2e+02 Score=24.16 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhcCc---CchHH-HHHHHHHHHHHHh
Q 017105 37 DDLIRSLQYRIQHEII---PLSEE-KQILREIKQLEGT 70 (377)
Q Consensus 37 D~~I~~Le~~i~h~sm---~L~EE-Kk~L~EI~~L~~~ 70 (377)
+++|.+||.-+..+-. .+.+| +.+..||+-|+.+
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~q 39 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQ 39 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 4678888887644333 34455 7788889888766
No 217
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=38.95 E-value=2.1e+02 Score=23.06 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017105 135 ALQQEVNDVAEKRDKAFANIKEL 157 (377)
Q Consensus 135 ~L~eEl~a~~e~rd~Aye~i~~L 157 (377)
.+.++.+.-.+.-+..+.++..+
T Consensus 58 ~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 58 ELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333333
No 218
>PF15456 Uds1: Up-regulated During Septation
Probab=38.68 E-value=2.8e+02 Score=24.53 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=40.3
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV-----------AEKRDKAFANIKELRKQRDEGNAYFFQY 171 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~-----------~e~rd~Aye~i~~LRkq~dE~n~~fyq~ 171 (377)
.++++||+++..+...+..+..++. +...+.....-+..+ .+....+-+.+..+-...++....+|+.
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567778877777777766665555 333333333333322 1223344445555555566666666665
Q ss_pred HHHHHHHH
Q 017105 172 RALLNEAK 179 (377)
Q Consensus 172 r~~~~kar 179 (377)
.+.....+
T Consensus 101 e~R~~~~~ 108 (124)
T PF15456_consen 101 ENRLAEVR 108 (124)
T ss_pred HHHHHHHH
Confidence 55554443
No 219
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=38.54 E-value=1e+02 Score=31.10 Aligned_cols=69 Identities=16% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 017105 98 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 166 (377)
Q Consensus 98 iK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~ 166 (377)
|+++...+..+..++......+....+++..+++.+..|+.+++.+...++..-..+......++-.+.
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~ 284 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK 284 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
No 220
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=38.23 E-value=2.2e+02 Score=23.18 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Q 017105 146 KRDKAFANIKELRKQRDEGNAYFF 169 (377)
Q Consensus 146 ~rd~Aye~i~~LRkq~dE~n~~fy 169 (377)
.|...-.+|..|=+..+.+.+..|
T Consensus 51 ~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 51 KRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 221
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.14 E-value=6.6e+02 Score=28.71 Aligned_cols=7 Identities=43% Similarity=0.249 Sum_probs=3.9
Q ss_pred CCCCccc
Q 017105 237 PDEKPLV 243 (377)
Q Consensus 237 pde~P~~ 243 (377)
|++..||
T Consensus 456 ~~~~CPv 462 (908)
T COG0419 456 AGEKCPV 462 (908)
T ss_pred CCCCCCC
Confidence 5566554
No 222
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=38.09 E-value=2.2e+02 Score=23.20 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 017105 154 IKELRKQRDEGNAYFFQYRA 173 (377)
Q Consensus 154 i~~LRkq~dE~n~~fyq~r~ 173 (377)
...|...+...+..|.....
T Consensus 91 ~~~L~~~f~~~m~~fq~~Q~ 110 (117)
T smart00503 91 TEKLRKKFKEVMNEFQRLQR 110 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544433
No 223
>smart00030 CLb CLUSTERIN Beta chain.
Probab=37.65 E-value=3.9e+02 Score=25.91 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHh
Q 017105 127 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWN 206 (377)
Q Consensus 127 ~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~fm~lwn 206 (377)
..-..+-..|..-|.++.+++.+|.... ++ ....+.+-+.+|| +.+|++|-
T Consensus 39 er~~eeh~~ll~tLe~~kk~KeeAlk~~------------------------~e--~e~kL~E~~~vCn---etm~alWe 89 (206)
T smart00030 39 EKTNKERKSLLSTLEEAKKKKEEALKDT------------------------RE--SEEKLKESQGVCN---ETMMALWE 89 (206)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH------------------------HH--HHHHHHHHHHHHH---HHHHHHHH
Confidence 3344555666666666766666654333 22 2334566778886 78999993
Q ss_pred CChhhHHHHHHHhHHHHHhhhhccCCC
Q 017105 207 NNKAFRDDYEKRLLQSLDMRQLSRDGR 233 (377)
Q Consensus 207 ~~~~FR~dY~k~~~~S~~~R~~t~DGR 233 (377)
=-|--|.+||+|+-|+--|
T Consensus 90 --------ECKpCLk~tCmkfYsr~Cr 108 (206)
T smart00030 90 --------ECKPCLKQTCMKFYARVCR 108 (206)
T ss_pred --------HhHHHHHHHHHHHHHHhcC
Confidence 2345588999999885544
No 224
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=37.45 E-value=5.5e+02 Score=27.56 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHH-------HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHH
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQD-------QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 136 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqe-------qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L 136 (377)
|-+|..++.++.. .+..+...-+++..+.- .+..-+.+-..++.++++.+.++-..--.+-.+.+....|
T Consensus 73 Vfqlddi~~qlr~---~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~l 149 (499)
T COG4372 73 VFQLDDIRPQLRA---LRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDL 149 (499)
T ss_pred hhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 017105 137 QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 184 (377)
Q Consensus 137 ~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~ 184 (377)
+.++.-+.+.|..+.+..++|..+..+....--+.........--+.+
T Consensus 150 qtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ 197 (499)
T COG4372 150 QTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQ 197 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 225
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=37.36 E-value=1.9e+02 Score=24.25 Aligned_cols=57 Identities=23% Similarity=0.447 Sum_probs=34.2
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKAL---DEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai---~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
+||++-..+...+..+..++.++..- .+...+|..|+..+...-..-=..+..||++
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 34444444444444444444333221 1356678888888888888877888888873
No 226
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=37.13 E-value=3.2e+02 Score=24.80 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHH
Q 017105 59 QILREIKQLEGTREKV 74 (377)
Q Consensus 59 k~L~EI~~L~~~R~~V 74 (377)
-+|..|+.|...++++
T Consensus 10 ~LInrInelQQaKKk~ 25 (134)
T PF15233_consen 10 DLINRINELQQAKKKS 25 (134)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3677888888876655
No 227
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.02 E-value=4.9e+02 Score=26.92 Aligned_cols=92 Identities=15% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhh--------hhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHH
Q 017105 65 KQLEGTREKVMANAAMRAKIQESMG--------KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 136 (377)
Q Consensus 65 ~~L~~~R~~V~anaa~~~ki~~s~~--------~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L 136 (377)
..|.+.+....+...........++ .-+.|..+=|-++..+..+..+....+..+..+..++.....-+..+
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~ 299 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSER 299 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017105 137 QQEVNDVAEKRDKAFANIKE 156 (377)
Q Consensus 137 ~eEl~a~~e~rd~Aye~i~~ 156 (377)
..+|+.+.+.....-..+.+
T Consensus 300 t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 300 TRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 228
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=36.70 E-value=2.7e+02 Score=23.86 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCCCCCCCCCC
Q 017105 188 QGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240 (377)
Q Consensus 188 ~~l~~~~~~eVe~fm~lwn~~~~FR~dY~k~~~~S~~~R~~t~DGR~~~pde~ 240 (377)
+--...+..-..+|...++.=-.-..+|..+. .....|+ -++.|||--
T Consensus 84 r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~-k~~i~Rq----~~i~~~~~t 131 (151)
T cd00179 84 RIRKTQHSGLSKKFVEVMTEFNKAQRKYRERY-KERIQRQ----LEITGGEAT 131 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHcCCCCC
Confidence 33445555556677777765555555665555 3344444 345666643
No 229
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=36.68 E-value=1.9e+02 Score=29.65 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=69.8
Q ss_pred HhhhhhHHHHHHhhhhccccccCCCCCCCHHHHHHHH-HHHHHHHhhcCcCchHHHHHHHHHHHHHH--hHHHHHHHHHH
Q 017105 4 KRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLI-RSLQYRIQHEIIPLSEEKQILREIKQLEG--TREKVMANAAM 80 (377)
Q Consensus 4 K~~Em~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I-~~Le~~i~h~sm~L~EEKk~L~EI~~L~~--~R~~V~anaa~ 80 (377)
-+.+|+.++-.|..|.-..+ -|..+| .+++++..|..|+|+.+...++..-.-=. .-..--.+.-|
T Consensus 24 ~k~~vD~~~LqLqNl~YE~~-----------hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lm 92 (355)
T PF09766_consen 24 AKQEVDALHLQLQNLLYEKS-----------HLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLM 92 (355)
T ss_pred HHhhhhHHHHHHhHHHHHHH-----------HHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHHH
Confidence 35566666666655543222 222333 56778888888888888777764332210 00112234455
Q ss_pred HHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 017105 81 RAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEV 140 (377)
Q Consensus 81 ~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl 140 (377)
-+.+.--+.+|..+.++.+.+......|.++...-+..|..+...++.+..-..-|+.-+
T Consensus 93 l~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 93 LARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 666677777777776666665555555555555555555555555555555444444444
No 230
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=36.68 E-value=3.7e+02 Score=28.55 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 129 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 129 i~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
+..++..|..++.++...+.++-++|..|+.++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 231
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=36.59 E-value=2.8e+02 Score=24.01 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 127 KALDEEIEALQQEVNDVAEKRDKAFANIKEL 157 (377)
Q Consensus 127 ~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~L 157 (377)
+.+...+..|..++..+.+..+..+..+..|
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 232
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.14 E-value=3.2e+02 Score=24.40 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=3.2
Q ss_pred HHhhccchh
Q 017105 98 VKLMGSDLD 106 (377)
Q Consensus 98 iK~~~~eLD 106 (377)
|..++..||
T Consensus 70 Id~vd~klD 78 (126)
T PF07889_consen 70 IDRVDDKLD 78 (126)
T ss_pred HHHHHhhHH
Confidence 333333333
No 233
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.99 E-value=4e+02 Score=25.51 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=22.2
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEE--IEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~e--i~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
.+|-.|-.+.+++...+..++..++.++.. ++.+|++...+....-.--+.|..++.
T Consensus 86 ~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 86 GKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333333333332 333444444444433333334444443
No 234
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=35.85 E-value=1e+03 Score=30.20 Aligned_cols=185 Identities=12% Similarity=0.139 Sum_probs=86.5
Q ss_pred CchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHH
Q 017105 53 PLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKK-EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE 131 (377)
Q Consensus 53 ~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~k-e~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ 131 (377)
...+=.++..+|.+|+.-.. ..-.+-+.+..-++.. ..++.+++.+.-++..+.+++..+......+...+...++
T Consensus 1305 d~~~~~kL~~ei~~Lk~el~---~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~ 1381 (1822)
T KOG4674|consen 1305 DKNDYEKLKSEISRLKEELE---EKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNA 1381 (1822)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666677777776533 2222222222222222 3444555555555555555555555554444444555554
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHhhhhHHHH--------------HHHHHHHHHHHHHhc
Q 017105 132 EIEALQQEVNDVAEKR-----------DKAF--ANIKELRKQRDEGNAYFF--------------QYRALLNEAKAMSVK 184 (377)
Q Consensus 132 ei~~L~eEl~a~~e~r-----------d~Ay--e~i~~LRkq~dE~n~~fy--------------q~r~~~~karela~~ 184 (377)
.+-.|.....+....+ ..+| +.+..|+.++.+.+.-+- +-+.....-+.--..
T Consensus 1382 q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~ 1461 (1822)
T KOG4674|consen 1382 QELELSDKKKAHELMQEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLL 1461 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4444443333333322 2233 555666666655432222 222222111111111
Q ss_pred cCHHHHHHHHHHHHHHHHHHHh----CChhhHHHHHHHhHHHHHhhhhccCCCCCCCCCC
Q 017105 185 KDVQGLKELSNSEVEKYMTLWN----NNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 240 (377)
Q Consensus 185 ~~v~~l~~~~~~eVe~fm~lwn----~~~~FR~dY~k~~~~S~~~R~~t~DGR~~~pde~ 240 (377)
..+..+....+.....-=..-+ ..+.++++|..--.+.+..=.-..+-|+|=|.+.
T Consensus 1462 ~~i~~~~e~~~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~ee 1521 (1822)
T KOG4674|consen 1462 EEIKKLLETVRKKTVDADSKSENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEE 1521 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 2233333333333332222223 3445566666655666666667788899999987
No 235
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.51 E-value=2.9e+02 Score=29.89 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=15.8
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 119 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF 151 (377)
Q Consensus 119 ik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Ay 151 (377)
+..+...-+.+.++-..|+.....+..+++.+.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333333334444445555555555555555554
No 236
>PRK09239 chorismate mutase; Provisional
Probab=35.47 E-value=1.7e+02 Score=24.89 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 128 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 128 ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.++.+|+.+..++-++..+|-..-..+-.+...
T Consensus 14 ~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~ 46 (104)
T PRK09239 14 ALRQSIDNIDAALIHMLAERFKCTQAVGVLKAE 46 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555543
No 237
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=35.36 E-value=58 Score=22.72 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHH
Q 017105 55 SEEKQILREIKQLEGTREKVM 75 (377)
Q Consensus 55 ~EEKk~L~EI~~L~~~R~~V~ 75 (377)
.||.+++.|..+|++.|+++.
T Consensus 1 adEqkL~sekeqLrrr~eqLK 21 (32)
T PF02344_consen 1 ADEQKLISEKEQLRRRREQLK 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999764
No 238
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.28 E-value=6.7e+02 Score=30.03 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=29.5
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 166 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~ 166 (377)
++-++.+++-.+....-.+..+.+.+..+.-+..++....+..-.+++.|-.+..+..+
T Consensus 695 ~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved 753 (1141)
T KOG0018|consen 695 SKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVED 753 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344433333334444444555555555555555555555566666665555444
No 239
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.15 E-value=6.7e+02 Score=27.89 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=41.7
Q ss_pred ccchhhhHHhHHHHHHHHHhH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHH
Q 017105 102 GSDLDGVKKESQAVWAKISHL---EGKVKALDEEIEALQQEVNDVAEKRDKAFANI----KELRKQRDEGNAYFFQYRAL 174 (377)
Q Consensus 102 ~~eLD~LKKE~dalr~kik~l---edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i----~~LRkq~dE~n~~fyq~r~~ 174 (377)
-.++..|+++.+.++..|..= -..+..++.+...|..+++.+.-.+|+.-..+ ...+..+++..+.|+++-..
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433211 12344455556666666666555555444443 33355577777777777666
Q ss_pred HHHHHHH
Q 017105 175 LNEAKAM 181 (377)
Q Consensus 175 ~~karel 181 (377)
+++..--
T Consensus 387 ~~~i~l~ 393 (581)
T KOG0995|consen 387 IRRIKLG 393 (581)
T ss_pred HHHHHHH
Confidence 6665443
No 240
>PF13166 AAA_13: AAA domain
Probab=35.09 E-value=6.2e+02 Score=27.52 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 017105 33 EEELDDLIRSLQYR 46 (377)
Q Consensus 33 ~eeiD~~I~~Le~~ 46 (377)
.++++..|..+...
T Consensus 324 ~~~~~~~~~~l~~~ 337 (712)
T PF13166_consen 324 KEELKSAIEALKEE 337 (712)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 241
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.92 E-value=5.9e+02 Score=28.66 Aligned_cols=8 Identities=0% Similarity=0.314 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 017105 41 RSLQYRIQ 48 (377)
Q Consensus 41 ~~Le~~i~ 48 (377)
.++|..+.
T Consensus 362 ~~vEr~~~ 369 (652)
T COG2433 362 EKVERKLP 369 (652)
T ss_pred HHHHHhcc
Confidence 33333333
No 242
>PRK11519 tyrosine kinase; Provisional
Probab=34.83 E-value=6.2e+02 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=15.5
Q ss_pred HHHHhhcCcCchHH-HHHHHHHHHHHHh
Q 017105 44 QYRIQHEIIPLSEE-KQILREIKQLEGT 70 (377)
Q Consensus 44 e~~i~h~sm~L~EE-Kk~L~EI~~L~~~ 70 (377)
.|+-+|+.+.+..| +..+..+..|+.+
T Consensus 292 ~fr~~~~~vd~~~ea~~~l~~~~~l~~q 319 (719)
T PRK11519 292 AFRQDKDSVDLPLEAKAVLDSMVNIDAQ 319 (719)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 35567788777766 3344445544443
No 243
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.78 E-value=5.6e+02 Score=28.59 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=18.9
Q ss_pred HHHHhhcCcCchHH-HHHHHHHHHHHHhHHH
Q 017105 44 QYRIQHEIIPLSEE-KQILREIKQLEGTREK 73 (377)
Q Consensus 44 e~~i~h~sm~L~EE-Kk~L~EI~~L~~~R~~ 73 (377)
.|+-.|+++.+..| .-.+.+|.+|+.+...
T Consensus 292 ~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~ 322 (726)
T PRK09841 292 VYRQQRDSVDLNLEAKAVLEQIVNVDNQLNE 322 (726)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45566777777665 4556667766665443
No 244
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.68 E-value=3.5e+02 Score=31.34 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=69.5
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhhhHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK---------ELRKQRDEGNAYFFQYRAL 174 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~---------~LRkq~dE~n~~fyq~r~~ 174 (377)
.+.-|+.......+...-+.-++...+.++..|+++++++.....--|+.|+ .|.+.++..+. -++--.
T Consensus 617 Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~--t~~~~~ 694 (1104)
T COG4913 617 KVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTH--TQSDIA 694 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcC--ChhHHH
Confidence 3445666666677777777778888899999999999999887766666553 23333333321 123345
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHh
Q 017105 175 LNEAKAMSVKKDVQGLKELSNSEVEKYMTLWN 206 (377)
Q Consensus 175 ~~karela~~~~v~~l~~~~~~eVe~fm~lwn 206 (377)
+.++..-+++--+..|+.+|.+||+.-.++-|
T Consensus 695 ~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~ 726 (1104)
T COG4913 695 IAKAALDAAQTRQKVLERQYQQEVTECAGLKK 726 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677778889999999999887665543
No 245
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.53 E-value=2.2e+02 Score=24.58 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 017105 150 AFANIKELR 158 (377)
Q Consensus 150 Aye~i~~LR 158 (377)
.|..+..|+
T Consensus 74 g~~NL~~LY 82 (107)
T PF06156_consen 74 GRDNLARLY 82 (107)
T ss_pred hHHHHHHHH
Confidence 344444443
No 246
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=34.07 E-value=3.8e+02 Score=24.73 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=41.2
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH--------------HHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA--------EKRDKAFAN--------------IKELRKQ 160 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~--------e~rd~Aye~--------------i~~LRkq 160 (377)
.+++.+++++..++..+..+.+.++.+..........|..+. +....||+. -..||..
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~r 106 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRER 106 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444444443333333332222 223344444 3556666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHh
Q 017105 161 RDEGNAYFFQYRALLNEAKAMSV 183 (377)
Q Consensus 161 ~dE~n~~fyq~r~~~~karela~ 183 (377)
+|......-+....+..|-.++.
T Consensus 107 RD~LErrl~~l~~tierAE~l~s 129 (159)
T PF05384_consen 107 RDELERRLRNLEETIERAENLVS 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666666666666666666544
No 247
>PRK10698 phage shock protein PspA; Provisional
Probab=33.95 E-value=4.3e+02 Score=25.28 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhh
Q 017105 35 ELDDLIRSLQYRIQH 49 (377)
Q Consensus 35 eiD~~I~~Le~~i~h 49 (377)
.|+.-|..++..+..
T Consensus 28 ~l~q~i~em~~~l~~ 42 (222)
T PRK10698 28 LVRLMIQEMEDTLVE 42 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665554
No 248
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=33.73 E-value=5.3e+02 Score=26.31 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=38.5
Q ss_pred CchHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHH
Q 017105 53 PLSEEKQI-LREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALD 130 (377)
Q Consensus 53 ~L~EEKk~-L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~ 130 (377)
.|..|-+- +..-..|.++|.++..-...+.. +|-.+.+.|..-|+.++.+...|+-+...+....
T Consensus 64 ~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~-------------qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 64 ALKRENQSLMESCENLEKTRQKLSHDLQVKES-------------QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666554 44557899998887664443332 4445555566666666666666665555554433
No 249
>PHA03386 P10 fibrous body protein; Provisional
Probab=33.55 E-value=1.3e+02 Score=25.74 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=6.6
Q ss_pred hhccchhhhHHhHHHHH
Q 017105 100 LMGSDLDGVKKESQAVW 116 (377)
Q Consensus 100 ~~~~eLD~LKKE~dalr 116 (377)
..+...|+|..+.+.++
T Consensus 16 avd~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 16 EVDTKVDALQTQLNGLE 32 (94)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 33333333444444443
No 250
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.76 E-value=3.6e+02 Score=28.65 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=6.8
Q ss_pred HHHHhCChhhHHHHH
Q 017105 202 MTLWNNNKAFRDDYE 216 (377)
Q Consensus 202 m~lwn~~~~FR~dY~ 216 (377)
+++.-++-.|+-.|.
T Consensus 198 lsY~v~~a~W~P~Yd 212 (525)
T TIGR02231 198 LTYQVGNASWTPSYD 212 (525)
T ss_pred EEEEeCCCcEeeeeE
Confidence 334444444554443
No 251
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.71 E-value=7.1e+02 Score=27.43 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 77 NAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 156 (377)
Q Consensus 77 naa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~ 156 (377)
..+|+++++...|.-+.++..|-.+..+|..|+..+|.++..+-. ..| =.+++...+..|-+.+.++..
T Consensus 318 ~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k---------q~I--s~e~fe~mn~Ere~L~reL~~ 386 (622)
T COG5185 318 VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK---------QGI--STEQFELMNQEREKLTRELDK 386 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---------cCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665555555554444444444444444444433311 011 123444455555555555555
Q ss_pred HHHHHhhhhHHHH
Q 017105 157 LRKQRDEGNAYFF 169 (377)
Q Consensus 157 LRkq~dE~n~~fy 169 (377)
+--+-++..+..+
T Consensus 387 i~~~~~~L~k~V~ 399 (622)
T COG5185 387 INIQSDKLTKSVK 399 (622)
T ss_pred hcchHHHHHHHHH
Confidence 5555555554443
No 252
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.63 E-value=3.3e+02 Score=28.45 Aligned_cols=27 Identities=11% Similarity=0.346 Sum_probs=11.5
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIE 134 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~ 134 (377)
++.+++.++..+..+.+.+..++..+.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~ 358 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLK 358 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 253
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.45 E-value=4.3e+02 Score=28.93 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHH
Q 017105 191 KELSNSEVEKYMTLWNNNKAFRDDYEK 217 (377)
Q Consensus 191 ~~~~~~eVe~fm~lwn~~~~FR~dY~k 217 (377)
..|+..++-.|++ .|+.-|..
T Consensus 283 ~~L~g~~i~~~~~------~~~~~y~~ 303 (555)
T TIGR03545 283 VDLFGPEIRKYLQ------KFLKYYDQ 303 (555)
T ss_pred HHHhhHHHHHHHH------HHHHHHHH
Confidence 3445555555444 34555554
No 254
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=32.20 E-value=1.9e+02 Score=31.63 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=36.5
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKA---L----DEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~a---i----~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
+..+-+++..+..++..++..+.. . ...+..|..++.++....+.+|+.|.+|-.++.+.+
T Consensus 565 ~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 565 IARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444421 1 114677777888888888888888888877665554
No 255
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=31.41 E-value=5.7e+02 Score=25.93 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017105 134 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 171 (377)
Q Consensus 134 ~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~ 171 (377)
.....++..+......||.....|.....++...|=+.
T Consensus 298 ~~~~~~re~~lq~L~~ay~~y~el~~nl~eG~kFY~dL 335 (353)
T cd09236 298 DPATKERERALQSLDLAYFKYKEIVSNLDEGRKFYNDL 335 (353)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888889999999999888887544444
No 256
>PHA03332 membrane glycoprotein; Provisional
Probab=31.39 E-value=9.8e+02 Score=28.91 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 123 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 123 edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
..++++.+..|+.|.+++ +......-..++.|+.|
T Consensus 929 ~~nI~avNgRIs~Led~V---N~r~~~v~~~intLA~q 963 (1328)
T PHA03332 929 DNNIRAVNGRVSDLEDQV---NLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HhhHHHhcccHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344455555555555443 33344444445555555
No 257
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=31.37 E-value=4e+02 Score=24.17 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 017105 56 EEKQILREIKQLEGTREKVMA 76 (377)
Q Consensus 56 EEKk~L~EI~~L~~~R~~V~a 76 (377)
|||+-.+|+..|......+..
T Consensus 31 E~KRgdRE~~~L~~~~~~~~e 51 (145)
T PF14942_consen 31 EEKRGDREVRVLENLTEMISE 51 (145)
T ss_pred HHccCcHHHHHHHHHHHHHHH
Confidence 568888888888888887655
No 258
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=30.71 E-value=5.2e+02 Score=25.25 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHH----h-HHHhHHHHHHH
Q 017105 58 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKIS----H-LEGKVKALDEE 132 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik----~-ledk~~ai~~e 132 (377)
.-+|.|+..+=++|..+..+.. ..+-+.+..+-.+...+|+-.+.+..+|. . ....+...+..
T Consensus 68 ~~vl~qte~iA~~~~~~aE~l~------------~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~ 135 (234)
T cd07686 68 LHMVQQTEQLSKIMKTHAEELN------------SGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCS 135 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777776655322 12333444444455666776666665554 1 33456677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHhccCH----HHHHHHHHHHH
Q 017105 133 IEALQQEVNDVAEKRDKAFAN---IKELRKQRDEGNA-------YFFQYRALLNEAKAMSVKKDV----QGLKELSNSEV 198 (377)
Q Consensus 133 i~~L~eEl~a~~e~rd~Aye~---i~~LRkq~dE~n~-------~fyq~r~~~~karela~~~~v----~~l~~~~~~eV 198 (377)
+..+-.+...++++-.+++.+ -.+.+..+..... .|--.....+.-++-=+.-++ ..||.++..=|
T Consensus 136 Y~~~~~~~e~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ~l~E~rv 215 (234)
T cd07686 136 YRQLTKEVNSAKEKYKDAVAKGKETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSLQKMQEEMI 215 (234)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777653 2344444443332 333333333333333333333 46777777777
Q ss_pred HHHHHHH
Q 017105 199 EKYMTLW 205 (377)
Q Consensus 199 e~fm~lw 205 (377)
-.+..+|
T Consensus 216 ~~ln~i~ 222 (234)
T cd07686 216 KALKGIL 222 (234)
T ss_pred HHHHHHH
Confidence 7777777
No 259
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.45 E-value=4.6e+02 Score=24.53 Aligned_cols=51 Identities=12% Similarity=0.272 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 017105 132 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS 182 (377)
Q Consensus 132 ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela 182 (377)
+...|..++..+..+...+-.++..|..+......+|...-..|..|+.++
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555555555555555555555544
No 260
>PLN02320 seryl-tRNA synthetase
Probab=30.16 E-value=3.4e+02 Score=29.53 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 017105 58 KQILREIKQLEGTREKVMA 76 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~~V~a 76 (377)
++++.++.+|+..|..+..
T Consensus 103 r~~~~~~~~lr~ern~~sk 121 (502)
T PLN02320 103 LALQKEVERLRAERNAVAN 121 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566777777777766654
No 261
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=29.93 E-value=4.8e+02 Score=24.60 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 112 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA 152 (377)
Q Consensus 112 ~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye 152 (377)
+...++.++.+...+..+.-+...|...+..+...||+.|.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443
No 262
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=29.84 E-value=1.6e+02 Score=23.60 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=34.2
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
|++|++++.-+..+--+.--.+--+-++++.=-.++..+-+.--.+|..+..+|.++....
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~e 64 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAAE 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555544444333333333333334444445566777777788888888888776543
No 263
>PRK10869 recombination and repair protein; Provisional
Probab=29.83 E-value=7.5e+02 Score=26.83 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHH----------HH
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDE----------EI 133 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~----------ei 133 (377)
+..|......+...+.....+.+....-+.+...+..+..+|...--.++.=-..+..+++++..++. ++
T Consensus 243 ~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~ 322 (553)
T PRK10869 243 LSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEEL 322 (553)
T ss_pred HHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 017105 134 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNS 196 (377)
Q Consensus 134 ~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~ 196 (377)
-...+++..=.+..+..-..+..|..+.+.....|...-..+.++|.-++..=...+......
T Consensus 323 ~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 323 PQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 264
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=29.48 E-value=4.3e+02 Score=23.93 Aligned_cols=100 Identities=11% Similarity=0.268 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHhcc-CH
Q 017105 111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA--YFFQYRALLNEAKAMSVKK-DV 187 (377)
Q Consensus 111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~--~fyq~r~~~~karela~~~-~v 187 (377)
.++.+-..++.+.+.+..+......+..+-.++...-+....+-..|..-.+.... .||..-..+... |-+-| .|
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~--Ln~p~~sV 92 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRR--LNSPGSSV 92 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHH--HcCCCCcc
Confidence 34444444444444455555555555555666666666666665556555555544 444444443332 21222 22
Q ss_pred HHHHHH--HHHHHHHHHHHHhCChhhHH
Q 017105 188 QGLKEL--SNSEVEKYMTLWNNNKAFRD 213 (377)
Q Consensus 188 ~~l~~~--~~~eVe~fm~lwn~~~~FR~ 213 (377)
. =..| .-..+|.-|.....+..|++
T Consensus 93 ~-~~~F~~~L~~LD~cl~Fl~~h~~fke 119 (157)
T PF04136_consen 93 N-SDSFKPMLSRLDECLEFLEEHPNFKE 119 (157)
T ss_pred c-chHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2 1111 22446666666667777765
No 265
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.41 E-value=5.6e+02 Score=25.19 Aligned_cols=87 Identities=21% Similarity=0.252 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhH
Q 017105 33 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKES 112 (377)
Q Consensus 33 ~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~ 112 (377)
+.+|..-+..+=.-++..+-.+.++=.-+.+ .=+...++-|....+ |-..|..++.+|..+..+..-+...+.+.
T Consensus 105 E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~-~f~~~Lkeyv~y~~s----lK~vlk~R~~~Q~~le~k~e~l~k~~~dr 179 (243)
T cd07666 105 EEELADSLKGMASCIDRCCKATDKRMKGLSE-QLLPVIHEYVLYSET----LMGVIKRRDQIQAELDSKVEALANKKADR 179 (243)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 5556666666655555555555554444444 233333443333333 33334445555544444333333333333
Q ss_pred HHHHHHHHhHHH
Q 017105 113 QAVWAKISHLEG 124 (377)
Q Consensus 113 dalr~kik~led 124 (377)
+.+...+..+++
T Consensus 180 ~~~~~ev~~~e~ 191 (243)
T cd07666 180 DLLKEEIEKLED 191 (243)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 266
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=29.37 E-value=2.8e+02 Score=22.56 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=45.1
Q ss_pred hhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 87 SMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 87 s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
+....+++-+.++.+.-++.-++.+...+.+.++.+..-.+ ...-..|..++..+.......-..|-.|++
T Consensus 8 s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~--~~~R~~L~~~l~~lv~~mE~K~dQI~~L~d 78 (79)
T PF06657_consen 8 SQSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLG--RRKRRDLEQELEELVKRMEAKADQIYKLYD 78 (79)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666667777666677777777776665555442221 124556777777777777777777777764
No 267
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.13 E-value=3.1e+02 Score=29.27 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 134 EALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 134 ~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
..|.++...+..+...+-..+..+-.+
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~~~~~~ 97 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALDELEAE 97 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 334444444444444333333333333
No 268
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=28.97 E-value=5.4e+02 Score=24.93 Aligned_cols=95 Identities=12% Similarity=0.175 Sum_probs=44.8
Q ss_pred ChhHhhhhhHHHHHHhhhhccccc---cCCCCCCCHHHHHHHHHHHHHHHhhcCc--------------CchHHHHHHHH
Q 017105 1 MDDKRKEMEPLHQALGKLRTTNNA---RSGGICSSEEELDDLIRSLQYRIQHEII--------------PLSEEKQILRE 63 (377)
Q Consensus 1 ~~~K~~Em~~lq~aL~Klr~~~~A---~~~~~~~S~eeiD~~I~~Le~~i~h~sm--------------~L~EEKk~L~E 63 (377)
|.+++..|+.|...|+++-..-.. +.+..+.+..++-..|..|=.-=.++++ +-..+++...+
T Consensus 24 F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d 103 (234)
T cd07664 24 FEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFAD 103 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777655322111 3334555555555555544332122211 12233344444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQV 98 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqi 98 (377)
.-.|--+ +..|...-+.|...|.+|-.+-...
T Consensus 104 ~~~l~e~---L~eYiR~i~svK~~f~~R~k~~~~~ 135 (234)
T cd07664 104 FYLFSEL---LGDYIRLIAAVKGVFDQRMKCWQKW 135 (234)
T ss_pred HHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444332 4555555555555566555443333
No 269
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=28.60 E-value=2e+02 Score=25.90 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=40.3
Q ss_pred HHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017105 98 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR 147 (377)
Q Consensus 98 iK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~r 147 (377)
...+.+++++.+..+......++.|+..+.+-+.+|..|..+++++....
T Consensus 75 ~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 75 VARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567778888888888888888888888888888888888888876543
No 270
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.52 E-value=1.7e+02 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Q 017105 144 AEKRDKAFANIKELRKQRDEGNAYF 168 (377)
Q Consensus 144 ~e~rd~Aye~i~~LRkq~dE~n~~f 168 (377)
+.+.|++-+++.++..++......|
T Consensus 72 ~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 72 NRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555544444433
No 271
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.19 E-value=3.5e+02 Score=22.46 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=14.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 122 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 155 (377)
Q Consensus 122 ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~ 155 (377)
|..++.........|..=-.++....+.+++.|+
T Consensus 51 La~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 51 LAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443
No 272
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=28.04 E-value=4.5e+02 Score=29.07 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhcC
Q 017105 35 ELDDLIRSLQYRIQHEI 51 (377)
Q Consensus 35 eiD~~I~~Le~~i~h~s 51 (377)
.|..++..|++.--|.-
T Consensus 9 ~L~~eL~~le~~ni~~l 25 (701)
T PF09763_consen 9 RLSKELSALEAANIHSL 25 (701)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 273
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=28.03 E-value=2.3e+02 Score=28.95 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=18.9
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 116 WAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN 153 (377)
Q Consensus 116 r~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~ 153 (377)
-.+|..+++.+.+.++.|+.|+.++.++...+..+-..
T Consensus 137 ~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kk 174 (308)
T PF06717_consen 137 NYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKK 174 (308)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555554443333
No 274
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=28.02 E-value=6.4e+02 Score=25.46 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105 133 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 170 (377)
Q Consensus 133 i~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq 170 (377)
......++..+......||.....|.....++.. ||+
T Consensus 300 ~~~~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~-FY~ 336 (356)
T cd09237 300 EKSKQKLRKEFFEKLKKAYNSFKKFSAGLPKGLE-FYD 336 (356)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HHH
Confidence 3446667777777777777777778777777764 444
No 275
>PHA03011 hypothetical protein; Provisional
Probab=27.74 E-value=4.2e+02 Score=23.26 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=40.8
Q ss_pred hccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 017105 101 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 166 (377)
Q Consensus 101 ~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~ 166 (377)
.-+++++++..++.++.+-+.+ ..++.-+.-+.+-+-...|.--++|--||.+.|....
T Consensus 55 k~GD~Nai~e~ldeL~~qYN~L-------~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 55 KEGDINAIIEILDELIAQYNEL-------LDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred ccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3467778888888887666554 4455555555666666777777888888888877654
No 276
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.34 E-value=1.1e+03 Score=28.07 Aligned_cols=124 Identities=26% Similarity=0.367 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchh---
Q 017105 30 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLD--- 106 (377)
Q Consensus 30 ~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD--- 106 (377)
-++..+|...++.|...+++--..-.|.|--|.|....+-+-+++-.+.. +|. ++.-.+|-+++.-+.+..
T Consensus 223 skte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkS---kim---~qqa~Lqrel~raR~e~keaq 296 (1243)
T KOG0971|consen 223 SKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKS---KIM---EQQADLQRELKRARKEAKEAQ 296 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999998877777665543322 211 111122222211111111
Q ss_pred ----hhHHhHHHHHHHHHhHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105 107 ----GVKKESQAVWAKISHLEGKVKALD-----EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 164 (377)
Q Consensus 107 ----~LKKE~dalr~kik~ledk~~ai~-----~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~ 164 (377)
..+-++++.-..| .+-.++ ..-++||-++..+.++.++.-..+-=|+.+..++
T Consensus 297 e~ke~~k~emad~ad~i-----EmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 297 EAKERYKEEMADTADAI-----EMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1122222222111 111222 2467899999999999999999999999887665
No 277
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=27.22 E-value=5.6e+02 Score=24.49 Aligned_cols=119 Identities=15% Similarity=0.278 Sum_probs=55.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHhhcc
Q 017105 25 RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKE-DIQDQVKLMGS 103 (377)
Q Consensus 25 ~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke-~iqeqiK~~~~ 103 (377)
+...-......|...|..|+..|+.++..-.|--+.|+ ..=+..+ ..+...++..+..+. .+...++.+..
T Consensus 28 Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq------~~~e~~i--~~~~~~v~~~~~~~~~~~~~~l~~L~~ 99 (247)
T PF06705_consen 28 RREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQ------SKFEEQI--NNMQERVENQISEKQEQLQSRLDSLND 99 (247)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555667777777777777766654444433332 2222111 122333333333322 23444455555
Q ss_pred chhhhHHhHHHHHHHHHh-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISH-LEGKVKALDEEIEALQQEVNDVAEKRDKAF 151 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~-ledk~~ai~~ei~~L~eEl~a~~e~rd~Ay 151 (377)
.|..|...+..-+..+.. ++.....+..++..|..-++.=+..|..-.
T Consensus 100 ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE 148 (247)
T PF06705_consen 100 RIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREERE 148 (247)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444443332 223333445555555555555444444333
No 278
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.11 E-value=8.9e+02 Score=26.83 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=18.4
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 146 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~ 146 (377)
|..|+.++..+...+..+..++..-.-.+..++.++..+...
T Consensus 290 i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~ 331 (754)
T TIGR01005 290 IQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQ 331 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Confidence 444555555555554444443332222344444444444443
No 279
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=26.98 E-value=1.9e+02 Score=29.38 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=17.5
Q ss_pred hhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 017105 107 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVND 142 (377)
Q Consensus 107 ~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a 142 (377)
.|+.....-+.+|..|+..+++++.++..+.++.++
T Consensus 142 ~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~ 177 (308)
T PF06717_consen 142 QIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDR 177 (308)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555444444444444444444443
No 280
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.71 E-value=6.6e+02 Score=25.14 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=10.4
Q ss_pred HHHhhcCcCchHH-HHHHHHHHHHHHh
Q 017105 45 YRIQHEIIPLSEE-KQILREIKQLEGT 70 (377)
Q Consensus 45 ~~i~h~sm~L~EE-Kk~L~EI~~L~~~ 70 (377)
|+-.|+.+.+... ...+..|..|+..
T Consensus 196 fr~~~~~~d~~~~~~~~~~~i~~L~~~ 222 (362)
T TIGR01010 196 YQIKNKVFDPKAQSSAQLSLISTLEGE 222 (362)
T ss_pred HHHhCCCcChHHHHHHHHHHHHHHHHH
Confidence 3444445444332 2233334444333
No 281
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=26.68 E-value=5.9e+02 Score=24.62 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 017105 125 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTL 204 (377)
Q Consensus 125 k~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~fm~l 204 (377)
..+.|-..|..+...+.+.+.--. ...-+.|-..+.++..||+++.-.-.- .=+|+..|--+|+. .
T Consensus 49 ~F~~l~~sV~~m~~~i~~~n~fl~--~~~~~~~~~~~~~~~~YyKkhIy~~d~-----~v~d~~~lv~~ck~-------F 114 (205)
T PF12238_consen 49 KFKSLFDSVPLMKHKISHMNAFLN--DWPPHMLEEGREKMTKYYKKHIYKEDS-----EVKDYNGLVKFCKD-------F 114 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--cCchhhhhccHHHHHHHHHHhccCccc-----ccccHHHHHHHHHH-------H
Confidence 333333444444444444333333 233344445566777788776543211 12378899999985 5
Q ss_pred HhCChhhHHHHHHHhHHH
Q 017105 205 WNNNKAFRDDYEKRLLQS 222 (377)
Q Consensus 205 wn~~~~FR~dY~k~~~~S 222 (377)
|.....|++-|+--+...
T Consensus 115 l~~~s~f~~l~~~~~~f~ 132 (205)
T PF12238_consen 115 LDSESPFMKLYKAFNTFE 132 (205)
T ss_pred hccccHHHHHHHHHHHHH
Confidence 667778888887766655
No 282
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.63 E-value=1.8e+02 Score=22.63 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=6.2
Q ss_pred hhhhHHhHHHHHHHH
Q 017105 105 LDGVKKESQAVWAKI 119 (377)
Q Consensus 105 LD~LKKE~dalr~ki 119 (377)
|+.++++.+.++..+
T Consensus 16 i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 16 INTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 283
>PRK14160 heat shock protein GrpE; Provisional
Probab=26.29 E-value=4.6e+02 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=10.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q 017105 155 KELRKQRDEGNAYFFQYRALLNE 177 (377)
Q Consensus 155 ~~LRkq~dE~n~~fyq~r~~~~k 177 (377)
..|+.++--..+.|-+||+...+
T Consensus 78 ~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 78 EALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334434444555555554443
No 284
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.87 E-value=9.7e+02 Score=26.82 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=5.9
Q ss_pred HHHHHHHHhHH
Q 017105 62 REIKQLEGTRE 72 (377)
Q Consensus 62 ~EI~~L~~~R~ 72 (377)
+-|..|+.+|.
T Consensus 313 r~IerLkeqr~ 323 (654)
T KOG4809|consen 313 RIIERLKEQRE 323 (654)
T ss_pred HHHHHhcchhh
Confidence 44555655554
No 285
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=25.72 E-value=23 Score=40.29 Aligned_cols=178 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred ChhHhhhhhHHHHHH-hhhhccccc-----cCCC-CCCCHHHHHHHHHHHHHHHhhcCcCchHH----HHHHHHHHHHHH
Q 017105 1 MDDKRKEMEPLHQAL-GKLRTTNNA-----RSGG-ICSSEEELDDLIRSLQYRIQHEIIPLSEE----KQILREIKQLEG 69 (377)
Q Consensus 1 ~~~K~~Em~~lq~aL-~Klr~~~~A-----~~~~-~~~S~eeiD~~I~~Le~~i~h~sm~L~EE----Kk~L~EI~~L~~ 69 (377)
+.+|-++|+.+.-.+ +.|+.+.+. ++++ .....-.+...|..|+-++.|..-...+= +++-..|+.|..
T Consensus 509 l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~ 588 (859)
T PF01576_consen 509 LQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQR 588 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 70 TREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 149 (377)
Q Consensus 70 ~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~ 149 (377)
..+-... ...+..++-..+..++..+..+++.++..++.....-+.++..+..+...+..|......+...+..
T Consensus 589 ~lee~~~------~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~ 662 (859)
T PF01576_consen 589 ELEEAQR------AREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRK 662 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 017105 150 AFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 184 (377)
Q Consensus 150 Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~ 184 (377)
+=..|..|..++++..+.+...-.-.++|..-+..
T Consensus 663 le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~ 697 (859)
T PF01576_consen 663 LEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQ 697 (859)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
No 286
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.62 E-value=4e+02 Score=22.23 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 77 NAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD 148 (377)
Q Consensus 77 naa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd 148 (377)
+....++|+.+++...-++=.|..+...=+.|..+.+.+++.-..|..+...++.+-..-++.+..+..+.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 287
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=25.42 E-value=1.2e+03 Score=27.82 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=29.7
Q ss_pred HHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 96 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 96 eqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.+++.....++.+.-+++..-.++.+.=+++..+.+.+..+..++..+....+.--..|...++.
T Consensus 283 ~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~ 347 (1072)
T KOG0979|consen 283 SEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKM 347 (1072)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555444444444444444444444444444444444444444333333
No 288
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=25.13 E-value=1.1e+03 Score=27.05 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCChhhHH--HHHHHh
Q 017105 197 EVEKYMTLWNNNKAFRD--DYEKRL 219 (377)
Q Consensus 197 eVe~fm~lwn~~~~FR~--dY~k~~ 219 (377)
+.-+.|-+-|+.--=|- ||++..
T Consensus 458 qLYHHVC~cNgeTPnRVmLD~yr~~ 482 (717)
T PF09730_consen 458 QLYHHVCMCNGETPNRVMLDYYRQG 482 (717)
T ss_pred HHHHHHHHccCCCCccHHHHHHHhh
Confidence 45566666666666663 787743
No 289
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.08 E-value=4.5e+02 Score=22.73 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=16.5
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 115 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF 151 (377)
Q Consensus 115 lr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Ay 151 (377)
+..+++.++..+..+...+..+..+++.+....+.++
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 290
>PHA03011 hypothetical protein; Provisional
Probab=25.06 E-value=4.7e+02 Score=22.95 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=12.9
Q ss_pred hhHHHHHHhhccchhhhHHhHHHHHHHHHh
Q 017105 92 EDIQDQVKLMGSDLDGVKKESQAVWAKISH 121 (377)
Q Consensus 92 e~iqeqiK~~~~eLD~LKKE~dalr~kik~ 121 (377)
.++.+++..+.+..++|--+-+-+...++.
T Consensus 60 Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~ 89 (120)
T PHA03011 60 NAIIEILDELIAQYNELLDEYNLIENEIKD 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 291
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.99 E-value=9.5e+02 Score=26.42 Aligned_cols=54 Identities=17% Similarity=0.352 Sum_probs=30.8
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKA----LDEEIEALQQEVNDVAEKRDKAFANIKELR 158 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~a----i~~ei~~L~eEl~a~~e~rd~Aye~i~~LR 158 (377)
...+..++..+..++..+.|.+.. +..+++.|-+.+-.++++.-..-+.|+.|+
T Consensus 457 k~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 457 KESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444455555544444 334666677777777777666666666665
No 292
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.80 E-value=67 Score=29.17 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=15.0
Q ss_pred CcCchHHHHHHHHHHHHHHhHHHH
Q 017105 51 IIPLSEEKQILREIKQLEGTREKV 74 (377)
Q Consensus 51 sm~L~EEKk~L~EI~~L~~~R~~V 74 (377)
+-+..+++++..||.+|++....+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~i 59 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAI 59 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC
Confidence 445566777777777777665433
No 293
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=24.77 E-value=6.3e+02 Score=24.27 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=28.4
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 017105 115 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 166 (377)
Q Consensus 115 lr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~ 166 (377)
+...|...+++...++.+++.-+.+...+......+-.+...|..++.....
T Consensus 117 ~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqa 168 (192)
T PF11180_consen 117 LERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQA 168 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555555555555555555555543
No 294
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=24.55 E-value=7.8e+02 Score=25.30 Aligned_cols=86 Identities=12% Similarity=0.151 Sum_probs=57.3
Q ss_pred HHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 017105 98 VKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVN---DVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 174 (377)
Q Consensus 98 iK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~---a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~ 174 (377)
+..+..+.--+-+.+|.++.-+.-|.+.++-...-++--.+... .+....++...+...++++.++.-..-|.+-..
T Consensus 245 l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~t 324 (336)
T PF05055_consen 245 LDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKT 324 (336)
T ss_pred HHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455666666666666666666665554443333333 455566666777788899999999999999999
Q ss_pred HHHHHHHHh
Q 017105 175 LNEAKAMSV 183 (377)
Q Consensus 175 ~~karela~ 183 (377)
+++||-+.-
T Consensus 325 InrAR~lVl 333 (336)
T PF05055_consen 325 INRARTLVL 333 (336)
T ss_pred HHHHHHHHH
Confidence 999988653
No 295
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.29 E-value=4.8e+02 Score=22.74 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhh
Q 017105 186 DVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMR 226 (377)
Q Consensus 186 ~v~~l~~~~~~eVe~fm~lwn~~~~FR~dY~k~~~~S~~~R 226 (377)
.+.+..+.|..=++.|+.-=..-+.|=+.|...-...-.||
T Consensus 104 ~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~ 144 (150)
T PF07200_consen 104 AASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777887443445677777776433333333
No 296
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=24.27 E-value=6.1e+02 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHhHHHHH
Q 017105 193 LSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLD 224 (377)
Q Consensus 193 ~~~~eVe~fm~lwn~~~~FR~dY~k~~~~S~~ 224 (377)
.+..++-.++..+-.-...|=.+.+.++|+..
T Consensus 186 ~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a 217 (236)
T cd07651 186 IWNREWKAALDDFQDLEEERIQFLKSNCWTFA 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455667777776666543
No 297
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.76 E-value=7.9e+02 Score=25.04 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=8.3
Q ss_pred hhhHHhHHHHHHHHHhHH
Q 017105 106 DGVKKESQAVWAKISHLE 123 (377)
Q Consensus 106 D~LKKE~dalr~kik~le 123 (377)
..++.++..+...+..+.
T Consensus 257 ~~l~~~l~~le~~l~~l~ 274 (444)
T TIGR03017 257 QNLKTDIARAESKLAELS 274 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 298
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=23.63 E-value=5.4e+02 Score=25.67 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.8
Q ss_pred CCCccc
Q 017105 238 DEKPLV 243 (377)
Q Consensus 238 de~P~~ 243 (377)
+..|||
T Consensus 229 ~G~~LV 234 (322)
T TIGR02492 229 SGQVLV 234 (322)
T ss_pred CCceee
Confidence 344554
No 299
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=23.54 E-value=7.6e+02 Score=24.82 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhH
Q 017105 30 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVK 109 (377)
Q Consensus 30 ~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LK 109 (377)
-.|+|++.-.|.+|++||.+--- ..|++..++...++...++ ..++++++. +||+|+
T Consensus 8 ~~~eed~rL~v~~LhHQvlTLqc----------------QLRDQ~~ahreLQas~dEa----~~L~~~L~~---kl~eLq 64 (277)
T PF15030_consen 8 EASEEDLRLRVQQLHHQVLTLQC----------------QLRDQGSAHRELQASRDEA----TRLQDELQG---KLEELQ 64 (277)
T ss_pred cccchhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHH
Confidence 35789999999999999865221 2355566655555544443 334444433 455666
Q ss_pred HhHHHHH
Q 017105 110 KESQAVW 116 (377)
Q Consensus 110 KE~dalr 116 (377)
++..+..
T Consensus 65 kk~~Ea~ 71 (277)
T PF15030_consen 65 KKQHEAN 71 (277)
T ss_pred HHhhhHh
Confidence 6666555
No 300
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.53 E-value=7.3e+02 Score=24.59 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=5.7
Q ss_pred CCCCCCCCC
Q 017105 231 DGRIRNPDE 239 (377)
Q Consensus 231 DGR~~~pde 239 (377)
-|...+|+.
T Consensus 290 ~G~~v~~g~ 298 (423)
T TIGR01843 290 VGGVVQPGE 298 (423)
T ss_pred cCceecCCC
Confidence 476677654
No 301
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=23.51 E-value=3.3e+02 Score=29.56 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHH
Q 017105 5 RKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQY 45 (377)
Q Consensus 5 ~~Em~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~ 45 (377)
+++|+.|++.|..|.-+-.--++..-.=.++||+.+..|+.
T Consensus 478 ~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~m 518 (583)
T KOG3809|consen 478 REKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEM 518 (583)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHH
Confidence 56899999999988632222222223346788888877763
No 302
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.44 E-value=5.4e+02 Score=23.01 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 129 LDEEIEALQQEVNDVAEKRDKAFANIK 155 (377)
Q Consensus 129 i~~ei~~L~eEl~a~~e~rd~Aye~i~ 155 (377)
++..|..|.++++.+...-..+-+.+.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555555444444
No 303
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=22.96 E-value=6.6e+02 Score=23.84 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=29.8
Q ss_pred hhhHHHHHHhhhhccc-cccCCCCCCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHH
Q 017105 7 EMEPLHQALGKLRTTN-NARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREI 64 (377)
Q Consensus 7 Em~~lq~aL~Klr~~~-~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI 64 (377)
++..++..|.+++... .......-.|.++|...|......+..-.-.|.+.-..|..|
T Consensus 53 ~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~ 111 (240)
T PF12795_consen 53 EIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEI 111 (240)
T ss_pred HHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554320 112223345666677666666666665555555554444444
No 304
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.78 E-value=4.5e+02 Score=25.67 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=23.4
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 116 WAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 158 (377)
Q Consensus 116 r~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LR 158 (377)
...|..+...+..++..+..++-+++.+.++....|..|+.+.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555566666666666666666665543
No 305
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=22.77 E-value=6.6e+02 Score=23.76 Aligned_cols=183 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred ChhHhhhhhHHHHHHhhhhccccc---cCCCCCCCHHHHHHHHHHHHHHHhhc--------------CcCchHHHHHHHH
Q 017105 1 MDDKRKEMEPLHQALGKLRTTNNA---RSGGICSSEEELDDLIRSLQYRIQHE--------------IIPLSEEKQILRE 63 (377)
Q Consensus 1 ~~~K~~Em~~lq~aL~Klr~~~~A---~~~~~~~S~eeiD~~I~~Le~~i~h~--------------sm~L~EEKk~L~E 63 (377)
|.+++..|+.|...|+++...-.. +.+..+.+..++-..+..|=.-=.|+ .|+-..+++...+
T Consensus 14 F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~~~qa~~d 93 (224)
T cd07623 14 FEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLHGEQADTD 93 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 143 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~ 143 (377)
.-.|--+ +..|.++-+.+.+.|..+..+-.........|+..+..+.-+. ...-.+.+..+..++.++
T Consensus 94 ~~~l~e~---L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~---------~~~~~~K~~~~~~ev~~~ 161 (224)
T cd07623 94 FYILAEL---LKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLE---------LSGRTDKLDQAQQEIKEW 161 (224)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCChhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH---HHHHHH
Q 017105 144 AEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVE---KYMTLW 205 (377)
Q Consensus 144 ~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe---~fm~lw 205 (377)
...-+.+-.....+..-...-...|-..|..-=+ ..|..|...+++ ..+.+|
T Consensus 162 e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk----------~~l~~~le~~i~~q~~~~~~W 216 (224)
T cd07623 162 EAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFK----------DIIIKYLESLLNTQQQLIKYW 216 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
No 306
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=22.70 E-value=8.2e+02 Score=24.88 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHH
Q 017105 54 LSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEI 133 (377)
Q Consensus 54 L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei 133 (377)
..-||++..|++.-+..|-.- ..+-..+.. ++.+++- ...||..|..+..+..+|.-....++.+...|
T Consensus 91 yaWEKKLY~EVKa~E~~r~~y---eKK~~~Lr~-~d~kg~~-------~~kidkTra~v~~L~tri~Vaiq~v~siS~~I 159 (312)
T PF04782_consen 91 YAWEKKLYDEVKAEEKLRIEY---EKKCKQLRK-QDAKGAD-------SSKIDKTRASVKDLHTRIRVAIQSVDSISKRI 159 (312)
T ss_pred HHHHHHHHHHHHccHHHHHHH---HHHHHHHHH-HHhCCcc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999998887643 222222222 1122111 12345566667777777766666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHh
Q 017105 134 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY----RALLNEAKAMSVK---KDVQGLKELSNSEVEKYMTLWN 206 (377)
Q Consensus 134 ~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~----r~~~~karela~~---~~v~~l~~~~~~eVe~fm~lwn 206 (377)
..|+++ +.|-.+.+|-.-+-.++..-|+. ...+..++-+... .--.+......-|.|.-|.-|+
T Consensus 160 ~kLRDe---------EL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~ 230 (312)
T PF04782_consen 160 EKLRDE---------ELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWH 230 (312)
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHH
Confidence 776654 67888888888888887755554 3344444533222 2456677777788888888887
Q ss_pred CCh----hhHHHHHHHhHHHHHhhhh
Q 017105 207 NNK----AFRDDYEKRLLQSLDMRQL 228 (377)
Q Consensus 207 ~~~----~FR~dY~k~~~~S~~~R~~ 228 (377)
... ..=++|++.. -+-.++-+
T Consensus 231 ~sF~~~i~~Qk~YV~aL-n~WL~~~l 255 (312)
T PF04782_consen 231 SSFCKWIKAQKSYVKAL-NGWLKLCL 255 (312)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 654 4567898854 44444444
No 307
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.67 E-value=7.1e+02 Score=24.12 Aligned_cols=95 Identities=19% Similarity=0.358 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHH
Q 017105 54 LSEEKQILREIKQLEGTREKVMANAAM------RAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVK 127 (377)
Q Consensus 54 L~EEKk~L~EI~~L~~~R~~V~anaa~------~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ 127 (377)
+..-+++-+++.++....+..-.++-. -+--...+..+..+.++++.+...+..+......++..+..++.++.
T Consensus 51 ~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~ 130 (225)
T COG1842 51 IARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIA 130 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017105 128 ALDEEIEALQQEVNDVAEKRD 148 (377)
Q Consensus 128 ai~~ei~~L~eEl~a~~e~rd 148 (377)
.++.....|............
T Consensus 131 e~~~~~~~l~ar~~~akA~~~ 151 (225)
T COG1842 131 ELRAKKEALKARKAAAKAQEK 151 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 308
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=22.64 E-value=6.7e+02 Score=23.80 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=8.6
Q ss_pred HhhhhhHHHHHHhhhh
Q 017105 4 KRKEMEPLHQALGKLR 19 (377)
Q Consensus 4 K~~Em~~lq~aL~Klr 19 (377)
+..-+..++.+|.-|.
T Consensus 16 ~~~~i~~l~~al~~L~ 31 (240)
T PF12795_consen 16 QKALIQDLQQALSFLD 31 (240)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344556666665544
No 309
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.97 E-value=8.7e+02 Score=24.88 Aligned_cols=133 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 143 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~ 143 (377)
|..|+++|+.....-..=+.|.+-+.-..-+.+..-.-..-=-.|-.--..++..|+.+--.+...++.++.+..+..++
T Consensus 59 ~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L 138 (338)
T KOG3647|consen 59 IEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAAL 138 (338)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 017105 144 AEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTL 204 (377)
Q Consensus 144 ~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe~fm~l 204 (377)
-.++.+-..++-.+|+.+....+--=.+=..-..-.+ +|+.++..=|.+|..+
T Consensus 139 ~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~Ee--------eLqkly~~Y~l~f~nl 191 (338)
T KOG3647|consen 139 GSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEE--------ELQKLYQRYFLRFHNL 191 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH--------HHHHHHHHHHHHHhhH
No 310
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.88 E-value=5.9e+02 Score=26.02 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=9.7
Q ss_pred hccchhhhHHhHHHHH
Q 017105 101 MGSDLDGVKKESQAVW 116 (377)
Q Consensus 101 ~~~eLD~LKKE~dalr 116 (377)
-+.||++||.++--.+
T Consensus 87 RetEI~eLksQL~RMr 102 (305)
T PF15290_consen 87 RETEIDELKSQLARMR 102 (305)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3456777777665544
No 311
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.70 E-value=4.9e+02 Score=21.85 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 129 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 161 (377)
Q Consensus 129 i~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~ 161 (377)
|+.-++.|.+..+.+..+.+...++=+..|.++
T Consensus 38 Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 38 LNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444443
No 312
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.61 E-value=1.1e+03 Score=25.91 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=26.7
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 156 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~ 156 (377)
++|.|++++.+-+..++.+. ..+......+..++.++..-.+.-|..|..
T Consensus 220 e~d~lk~e~~~~~~~i~~~~---~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 220 EFDKLKKEGKADKQKIKSAK---NDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHhccHhHHHHHHH
Confidence 34444444444444444433 233444555666666666666666666653
No 313
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=21.20 E-value=5.4e+02 Score=24.53 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=32.6
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 170 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq 170 (377)
-.+|+.++.++|..|++-.++++.|+.-.+.=.+.|. +..+=.+++.+..||.++-+.+
T Consensus 49 T~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~-------EFVEIMKeMQkDMDEKMDvLiN 107 (205)
T PF15079_consen 49 TQELKNELREVREELKEKMEEIKQIKDIMDKDFDKLH-------EFVEIMKEMQKDMDEKMDVLIN 107 (205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHhHHHhhhHHhh
Confidence 3457777777777666655555555543332222222 2333345577777777764443
No 314
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=21.18 E-value=4.8e+02 Score=21.63 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 017105 133 IEALQQEVNDVAEKRDKAFANIKEL------RKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVE 199 (377)
Q Consensus 133 i~~L~eEl~a~~e~rd~Aye~i~~L------Rkq~dE~n~~fyq~r~~~~karela~~~~v~~l~~~~~~eVe 199 (377)
...+..++.......+..+..+..+ +..+++....|-.|+....++-+++..|+..+...++..++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 149 (181)
T PF12729_consen 77 RQEIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILNGEAR 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHH
Confidence 4444444455555555555554444 445666667777788888999999999999988888887764
No 315
>PF13514 AAA_27: AAA domain
Probab=21.14 E-value=1.4e+03 Score=26.90 Aligned_cols=12 Identities=17% Similarity=-0.025 Sum_probs=6.5
Q ss_pred CCCCCCCCCccc
Q 017105 232 GRIRNPDEKPLV 243 (377)
Q Consensus 232 GR~~~pde~P~~ 243 (377)
|-..++|..+|+
T Consensus 999 ~l~~d~d~~~~~ 1010 (1111)
T PF13514_consen 999 RLRVDEDGDKPV 1010 (1111)
T ss_pred eeeeccccCccc
Confidence 335566665544
No 316
>PF13166 AAA_13: AAA domain
Probab=21.07 E-value=1.1e+03 Score=25.68 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 017105 113 QAVWAKISHLEGKVKALDEEIEALQQEVNDVA 144 (377)
Q Consensus 113 dalr~kik~ledk~~ai~~ei~~L~eEl~a~~ 144 (377)
+.+...+..++..+...+..+..+..+...+.
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~ 397 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELK 397 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333333
No 317
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=20.82 E-value=5.6e+02 Score=25.82 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 017105 132 EIEALQQEVNDVAEKR 147 (377)
Q Consensus 132 ei~~L~eEl~a~~e~r 147 (377)
++..|+.+.+.+...+
T Consensus 35 ~~~~l~~~~~~~~~~~ 50 (378)
T TIGR01554 35 EKEELETDVEKLKEEI 50 (378)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 318
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.73 E-value=5.6e+02 Score=26.72 Aligned_cols=11 Identities=18% Similarity=0.447 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 017105 60 ILREIKQLEGT 70 (377)
Q Consensus 60 ~L~EI~~L~~~ 70 (377)
+.++++.|+..
T Consensus 332 l~~~~~~l~~~ 342 (451)
T PF03961_consen 332 LKEKLEELEEE 342 (451)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 319
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=20.59 E-value=7.9e+02 Score=24.06 Aligned_cols=81 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCHHHHH
Q 017105 112 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLK 191 (377)
Q Consensus 112 ~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~~v~~l~ 191 (377)
+.-+..-|.++..++..-+..+..-..+......... -..|..|-.+..++. .++..|...|+|.+.+
T Consensus 85 ~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~--~~~i~~l~~~I~~ll----------~~aE~LGeeG~VdeA~ 152 (254)
T PF03194_consen 85 LRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEK--AEKIDELDEKIGELL----------KEAEELGEEGDVDEAQ 152 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhH--HHHHHHHHHHHHHHH----------HHHHHHHHCCCHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 017105 192 ELSNSEVEKYMTLW 205 (377)
Q Consensus 192 ~~~~~eVe~fm~lw 205 (377)
.+ ..+|+.+...+
T Consensus 153 ~~-~~~~e~Lk~ek 165 (254)
T PF03194_consen 153 KL-MEEVEKLKEEK 165 (254)
T ss_pred HH-HHHHHHHHHHH
No 320
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.52 E-value=1.5e+03 Score=27.20 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHH
Q 017105 57 EKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 136 (377)
Q Consensus 57 EKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L 136 (377)
+|.++.|-.+|...=+.+..+++.+...-...++.-..++|+ ..+...++..|+.+...+..-..++..|
T Consensus 438 ~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~----------~~et~el~~~iknlnk~L~~r~~elsrl 507 (1195)
T KOG4643|consen 438 EKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQL----------EAETEELLNQIKNLNKSLNNRDLELSRL 507 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666655555555554444344444444444444 3334444444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q 017105 137 QQEVNDVAEKRD 148 (377)
Q Consensus 137 ~eEl~a~~e~rd 148 (377)
....+.+.++.+
T Consensus 508 ~a~~~elkeQ~k 519 (1195)
T KOG4643|consen 508 HALKNELKEQYK 519 (1195)
T ss_pred HHHHHHHHHHHH
Confidence 444444433333
No 321
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.37 E-value=4.9e+02 Score=21.36 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=5.7
Q ss_pred HHHHHHHHHHh
Q 017105 152 ANIKELRKQRD 162 (377)
Q Consensus 152 e~i~~LRkq~d 162 (377)
++|..||.+++
T Consensus 64 eEI~rLr~eLe 74 (79)
T PF08581_consen 64 EEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 34555555544
No 322
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.33 E-value=5.1e+02 Score=21.53 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 127 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 127 ~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
..+..++..-..+..++-...|..-.+++.|+.+
T Consensus 34 ~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~ 67 (96)
T PF08647_consen 34 LRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQ 67 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 323
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=20.13 E-value=1e+03 Score=24.96 Aligned_cols=37 Identities=11% Similarity=-0.042 Sum_probs=29.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCcCchHHHHHHH
Q 017105 26 SGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILR 62 (377)
Q Consensus 26 ~~~~~~S~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~ 62 (377)
+..-|.++++.=..+..-+......++++.++.+||+
T Consensus 16 ~l~~~~~~eekik~L~~~~~d~~e~~~~v~~~~kvlq 52 (391)
T KOG1850|consen 16 GLPDAEKVEEKIKKLAESEKDNAELKIKVLDYDKVLQ 52 (391)
T ss_pred cCCccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445899999988888888888888888888887775
No 324
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=20.03 E-value=8.7e+02 Score=26.03 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 017105 171 YRALLNEAK 179 (377)
Q Consensus 171 ~r~~~~kar 179 (377)
.+.++.+|.
T Consensus 308 L~dDL~ka~ 316 (426)
T smart00806 308 LKEDLEKAE 316 (426)
T ss_pred HHHHHHHHH
Confidence 344444433
Done!