Query 017105
Match_columns 377
No_of_seqs 106 out of 123
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 96.2 0.63 2.2E-05 43.4 20.0 77 103-179 90-166 (256)
2 3na7_A HP0958; flagellar bioge 95.2 1.9 6.6E-05 40.0 19.2 127 33-175 13-141 (256)
3 2dfs_A Myosin-5A; myosin-V, in 90.4 6.2 0.00021 44.2 16.5 112 34-165 924-1043(1080)
4 3q8t_A Beclin-1; autophagy, AT 90.0 5.8 0.0002 32.2 12.0 78 55-159 18-95 (96)
5 2dfs_A Myosin-5A; myosin-V, in 89.1 7.5 0.00026 43.5 15.9 33 114-146 981-1013(1080)
6 1c1g_A Tropomyosin; contractIl 88.3 12 0.0004 32.3 20.4 10 7-16 7-16 (284)
7 3vkg_A Dynein heavy chain, cyt 86.0 15 0.00052 45.8 17.1 41 2-50 1909-1953(3245)
8 2eqb_B RAB guanine nucleotide 85.9 5.1 0.00017 33.1 9.2 61 110-170 5-65 (97)
9 3i00_A HIP-I, huntingtin-inter 84.2 9 0.00031 32.5 10.3 70 89-164 11-80 (120)
10 2v4h_A NF-kappa-B essential mo 84.2 8.9 0.0003 32.3 10.0 64 111-178 25-88 (110)
11 3hnw_A Uncharacterized protein 82.1 13 0.00045 32.0 10.7 59 107-165 72-130 (138)
12 3ol1_A Vimentin; structural ge 80.6 24 0.00082 29.4 12.7 17 147-163 64-80 (119)
13 3hnw_A Uncharacterized protein 79.7 15 0.0005 31.7 10.1 16 32-47 26-41 (138)
14 3bas_A Myosin heavy chain, str 78.2 24 0.00081 28.0 10.9 69 97-165 15-83 (89)
15 2efr_A General control protein 77.1 38 0.0013 29.8 16.3 79 92-177 73-151 (155)
16 1jcd_A Major outer membrane li 76.2 14 0.00047 27.2 7.6 43 113-155 7-49 (52)
17 3u06_A Protein claret segregat 74.2 8.9 0.0003 38.4 8.3 59 102-160 2-60 (412)
18 3a7p_A Autophagy protein 16; c 73.8 39 0.0013 29.9 11.3 65 104-168 69-133 (152)
19 2lw1_A ABC transporter ATP-bin 72.8 22 0.00074 28.0 8.7 29 131-159 56-84 (89)
20 2ocy_A RAB guanine nucleotide 72.0 46 0.0016 29.4 11.4 52 119-170 46-97 (154)
21 3u59_A Tropomyosin beta chain; 71.6 38 0.0013 27.2 12.6 11 106-116 5-15 (101)
22 4etp_A Kinesin-like protein KA 71.3 12 0.00042 37.2 8.5 58 103-160 3-60 (403)
23 3u1c_A Tropomyosin alpha-1 cha 70.0 42 0.0014 27.1 13.4 38 118-155 31-68 (101)
24 3swk_A Vimentin; cytoskeleton, 68.3 40 0.0014 26.6 9.3 30 131-160 49-78 (86)
25 3cvf_A Homer-3, homer protein 67.6 35 0.0012 27.1 8.7 67 111-177 7-73 (79)
26 2dq0_A Seryl-tRNA synthetase; 66.0 21 0.00071 36.2 9.0 28 134-161 72-99 (455)
27 3ol1_A Vimentin; structural ge 65.7 57 0.002 27.1 14.2 61 105-165 43-103 (119)
28 1wle_A Seryl-tRNA synthetase; 63.4 49 0.0017 34.0 11.2 94 64-162 43-147 (501)
29 1jcd_A Major outer membrane li 63.1 27 0.00094 25.6 6.8 44 105-148 6-49 (52)
30 2jee_A YIIU; FTSZ, septum, coi 60.8 62 0.0021 25.8 9.2 52 108-159 25-76 (81)
31 2dq0_A Seryl-tRNA synthetase; 60.5 32 0.0011 34.8 9.1 19 58-76 41-59 (455)
32 3swk_A Vimentin; cytoskeleton, 60.2 51 0.0017 26.0 8.5 35 129-163 26-60 (86)
33 2jee_A YIIU; FTSZ, septum, coi 60.2 63 0.0022 25.7 10.0 46 105-150 29-74 (81)
34 3jsv_C NF-kappa-B essential mo 58.9 74 0.0025 26.0 10.2 64 111-178 3-66 (94)
35 1l8d_A DNA double-strand break 58.8 67 0.0023 25.5 9.9 27 136-162 69-95 (112)
36 3qne_A Seryl-tRNA synthetase, 54.7 44 0.0015 34.3 9.1 19 58-76 43-61 (485)
37 2q6q_A Spindle POLE BODY compo 54.0 29 0.001 27.0 5.8 67 90-170 4-70 (74)
38 3ghg_A Fibrinogen alpha chain; 53.1 2.1E+02 0.0073 29.9 13.8 13 58-70 60-72 (562)
39 3u1c_A Tropomyosin alpha-1 cha 53.1 88 0.003 25.2 12.6 11 107-117 6-16 (101)
40 2dq3_A Seryl-tRNA synthetase; 52.2 26 0.00088 35.0 6.8 19 129-147 80-98 (425)
41 3q8t_A Beclin-1; autophagy, AT 52.1 91 0.0031 25.1 12.5 60 101-160 9-68 (96)
42 3qne_A Seryl-tRNA synthetase, 51.8 24 0.00081 36.3 6.6 22 136-157 76-97 (485)
43 2eqb_B RAB guanine nucleotide 50.5 1E+02 0.0036 25.2 12.2 66 101-166 3-69 (97)
44 3lay_A Zinc resistance-associa 50.4 1.1E+02 0.0037 27.3 9.9 23 146-168 114-136 (175)
45 3oja_A Leucine-rich immune mol 49.6 1.7E+02 0.0058 28.6 12.3 40 129-168 433-472 (487)
46 3jsv_C NF-kappa-B essential mo 48.9 81 0.0028 25.8 8.0 66 100-165 20-88 (94)
47 1ses_A Seryl-tRNA synthetase; 48.7 55 0.0019 32.6 8.6 30 133-162 66-95 (421)
48 3o0z_A RHO-associated protein 47.7 1.5E+02 0.0053 26.4 16.5 61 105-165 71-131 (168)
49 3a7p_A Autophagy protein 16; c 46.7 1.5E+02 0.0051 26.1 10.0 32 103-134 96-127 (152)
50 1wle_A Seryl-tRNA synthetase; 46.6 93 0.0032 31.9 10.0 22 127-148 126-147 (501)
51 2v4h_A NF-kappa-B essential mo 46.5 1.3E+02 0.0045 25.2 10.8 61 97-161 39-99 (110)
52 3cve_A Homer protein homolog 1 45.6 1.1E+02 0.0036 23.9 10.5 63 115-177 5-67 (72)
53 4e61_A Protein BIM1; EB1-like 42.9 54 0.0018 27.4 6.2 44 76-119 5-48 (106)
54 2dq3_A Seryl-tRNA synthetase; 42.9 68 0.0023 32.0 8.2 63 58-137 40-102 (425)
55 4emc_A Monopolin complex subun 42.7 89 0.003 28.5 8.1 28 94-121 11-38 (190)
56 1m1j_B Fibrinogen beta chain; 42.2 2E+02 0.0068 29.5 11.5 26 131-156 168-193 (464)
57 2fxo_A Myosin heavy chain, car 41.9 1.5E+02 0.0051 24.6 15.7 38 127-164 86-123 (129)
58 3mq9_A Bone marrow stromal ant 41.5 2.6E+02 0.0088 27.2 14.9 66 108-176 402-467 (471)
59 2xnx_M M protein, M1-BC1; cell 41.5 66 0.0023 28.3 6.8 63 100-162 63-125 (146)
60 2wt7_B Transcription factor MA 41.2 1.3E+02 0.0044 24.3 8.0 12 63-74 22-33 (90)
61 3lss_A Seryl-tRNA synthetase; 41.2 69 0.0024 32.9 8.0 22 58-79 47-68 (484)
62 2e7s_A RAB guanine nucleotide 40.8 77 0.0026 27.4 7.1 44 127-170 42-85 (135)
63 1wt6_A Myotonin-protein kinase 40.5 99 0.0034 24.7 7.1 37 127-163 34-70 (81)
64 4fye_A SIDF, inhibitor of grow 38.4 3.2E+02 0.011 27.7 12.1 80 103-185 523-616 (761)
65 2yy0_A C-MYC-binding protein; 38.0 40 0.0014 24.6 4.2 29 103-131 19-47 (53)
66 3ghg_A Fibrinogen alpha chain; 37.9 3E+02 0.01 28.9 12.0 11 67-77 66-76 (562)
67 2l5g_B Putative uncharacterize 36.9 33 0.0011 24.3 3.4 34 91-124 4-37 (42)
68 3tnu_A Keratin, type I cytoske 36.5 1.8E+02 0.0063 24.1 11.5 18 104-121 53-70 (131)
69 3lay_A Zinc resistance-associa 36.4 1.8E+02 0.0061 25.9 9.0 6 52-57 66-71 (175)
70 2v66_B Nuclear distribution pr 36.4 1.9E+02 0.0064 24.2 11.9 57 100-159 7-63 (111)
71 2w83_C C-JUN-amino-terminal ki 35.3 1.6E+02 0.0056 23.2 7.9 50 108-160 24-73 (77)
72 3mq9_A Bone marrow stromal ant 35.1 3.2E+02 0.011 26.5 12.5 112 30-158 347-470 (471)
73 2js5_A Uncharacterized protein 34.2 79 0.0027 24.6 5.5 61 103-163 3-63 (71)
74 1uii_A Geminin; human, DNA rep 32.3 66 0.0023 25.8 4.9 37 83-119 40-76 (83)
75 1ses_A Seryl-tRNA synthetase; 31.7 94 0.0032 30.9 7.1 22 127-148 74-95 (421)
76 2zqm_A Prefoldin beta subunit 31.3 1.9E+02 0.0066 22.7 12.0 27 74-100 22-48 (117)
77 3cvf_A Homer-3, homer protein 31.2 1.9E+02 0.0066 22.7 9.0 48 114-161 24-71 (79)
78 2w83_C C-JUN-amino-terminal ki 30.3 1.5E+02 0.0051 23.4 6.5 30 90-119 31-60 (77)
79 3csx_A Putative uncharacterize 30.1 98 0.0034 24.7 5.5 62 104-165 16-77 (81)
80 2p22_C Protein SRN2; endosome, 29.7 3.1E+02 0.011 24.6 14.4 19 197-218 159-177 (192)
81 3nmd_A CGMP dependent protein 29.1 92 0.0031 24.3 5.1 23 119-141 42-64 (72)
82 3ghg_B Fibrinogen beta chain; 28.2 2.6E+02 0.0087 28.7 9.6 31 129-159 161-191 (461)
83 3tnu_A Keratin, type I cytoske 28.2 2.6E+02 0.0088 23.2 11.6 45 114-158 81-125 (131)
84 3twe_A Alpha4H; unknown functi 27.6 35 0.0012 21.6 2.0 19 2-20 4-22 (27)
85 3kyp_A Pfnaps, nucleosome asse 25.8 1.6E+02 0.0055 26.2 6.9 42 133-177 5-46 (193)
86 3viq_B Mating-type switching p 25.2 1.7E+02 0.0059 23.4 6.2 64 93-158 5-68 (85)
87 1gk4_A Vimentin; intermediate 24.9 2.4E+02 0.0082 21.8 11.3 31 119-149 35-65 (84)
88 3uux_B Mitochondrial division 23.9 3.7E+02 0.013 25.3 9.2 43 105-147 179-221 (242)
89 3sjb_C Golgi to ER traffic pro 23.7 65 0.0022 26.3 3.5 20 53-72 21-40 (93)
90 2fxo_A Myosin heavy chain, car 23.3 3.2E+02 0.011 22.6 17.4 15 109-123 54-68 (129)
91 1wt6_A Myotonin-protein kinase 23.2 2.8E+02 0.0097 22.0 8.6 50 87-143 22-71 (81)
92 3bas_A Myosin heavy chain, str 23.1 2.7E+02 0.0093 21.7 11.0 55 103-157 14-68 (89)
93 1lq7_A Alpha3W; three helix bu 23.1 2E+02 0.0068 21.4 5.8 48 93-140 13-64 (67)
94 2ke4_A CDC42-interacting prote 22.5 2.6E+02 0.0088 22.6 6.9 28 86-113 52-79 (98)
95 3rmi_A Chorismate mutase prote 22.4 3.2E+02 0.011 22.3 10.3 74 126-199 14-89 (114)
96 3tul_A Cell invasion protein S 22.3 4E+02 0.014 23.5 8.5 48 106-153 72-129 (158)
97 2d4y_A HAP1, flagellar HOOK-as 22.2 4.2E+02 0.014 26.2 9.9 73 90-165 65-142 (463)
98 3lss_A Seryl-tRNA synthetase; 22.1 3.3E+02 0.011 27.9 9.2 11 62-72 37-47 (484)
99 4hpq_C ATG17, KLTH0D15642P; au 21.9 6.1E+02 0.021 25.4 22.1 114 105-228 237-350 (413)
100 3m91_A Proteasome-associated A 21.5 2.4E+02 0.0081 20.4 7.0 37 107-143 13-49 (51)
101 3nmd_A CGMP dependent protein 21.4 2.9E+02 0.0099 21.4 7.6 16 148-163 50-65 (72)
102 4gkw_A Spindle assembly abnorm 21.3 4.1E+02 0.014 23.2 12.9 47 104-150 33-79 (167)
103 3vlc_E Golgi to ER traffic pro 21.0 36 0.0012 27.9 1.5 62 49-118 24-85 (94)
104 3ghg_C Fibrinogen gamma chain; 20.8 1.6E+02 0.0055 29.7 6.5 36 123-158 97-132 (411)
105 1gqe_A Release factor 2, RF2; 20.8 6.2E+02 0.021 25.0 12.7 58 6-72 9-68 (365)
106 2xs1_A Programmed cell death 6 20.6 7.5E+02 0.026 25.9 16.1 35 137-171 652-686 (704)
107 4etp_A Kinesin-like protein KA 20.4 2.7E+02 0.0092 27.5 8.0 37 111-147 4-40 (403)
108 3vkg_A Dynein heavy chain, cyt 20.2 1.4E+03 0.049 29.0 20.3 54 110-163 2014-2067(3245)
109 1wlq_A Geminin; coiled-coil; 2 20.1 1.3E+02 0.0045 24.1 4.5 35 83-117 32-66 (83)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.23 E-value=0.63 Score=43.37 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=43.7
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 179 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~kar 179 (377)
.+++.|.++++.+...+..+++.+..+...+..+...+..+.......-.++..++.+++......-.-...+.+.+
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r 166 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKK 166 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666555565555555555544444444443333
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.24 E-value=1.9 Score=40.04 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhH
Q 017105 33 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKES 112 (377)
Q Consensus 33 ~eeiD~~I~~Le~~i~h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~ 112 (377)
.-.||..|..|.+++.+- -.+|..|+.....+ ...+...-..-+.+..+++.+..+|+.++..+
T Consensus 13 LQ~lD~~i~~l~~~~~~l----------p~el~~le~~~~~l------~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri 76 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREK----------RKDLDKALNDKEAK------NKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 76 (256)
T ss_dssp HHHHHHHHHHTHHHHHHH----------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999888773 24455554443322 12222222233334444555455555555555
Q ss_pred HHHHHHHHhH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 017105 113 QAVWAKISHL--EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 175 (377)
Q Consensus 113 dalr~kik~l--edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~ 175 (377)
...+.++..+ ...+.++..+|..+..+...+.+....+.+.+..+..........+-.....+
T Consensus 77 ~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 77 ASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555443 23455555566666666666666666666666666555555554444444333
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.39 E-value=6.2 Score=44.20 Aligned_cols=112 Identities=17% Similarity=0.206 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhc---CcCchHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccch
Q 017105 34 EELDDLIRSLQYRIQHE---IIPLSEE-----KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDL 105 (377)
Q Consensus 34 eeiD~~I~~Le~~i~h~---sm~L~EE-----Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eL 105 (377)
..|...|..|+.+++.. ...|.++ .....|++.|+..-+.+.. ...+.......++.+..++
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~----------~~~e~~~~~~~v~~L~~e~ 993 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM----------SEEEAKNATNRVLSLQEEI 993 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 45555566666655442 2233332 3455666666555333322 2223334444555544444
Q ss_pred hhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 106 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 106 D~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
+.++.+++.+....+.+++ .+..+++++ .++....-.+...||.|.++.+
T Consensus 994 ~~l~~~~~~~~ke~~~lee-------~~~~~~~~L---~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEE-------WADKYKHET---EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333 333333222 2333334444455555555555
No 4
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.99 E-value=5.8 Score=32.22 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHH
Q 017105 55 SEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIE 134 (377)
Q Consensus 55 ~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~ 134 (377)
.+|..++.|+..|.+.+..|-+ .|..+..+...+..+-...+. .+....-+.-
T Consensus 18 ~eE~~L~~eL~~lEke~~~l~~--------------------el~~le~E~~~L~~eE~~~w~-------eyn~~~~ql~ 70 (96)
T 3q8t_A 18 LEEERLIQELEDVEKNRKVVAE--------------------NLEKVQAEAERLDQEEAQYQR-------EYSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH--------------------HHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHH
Confidence 4677788888888887775422 222222222333333333332 2344555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 135 ALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 135 ~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
.++.+++.+..+.+-+-..+..|++
T Consensus 71 e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666666666666666666654
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.11 E-value=7.5 Score=43.54 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=14.3
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 017105 114 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 146 (377)
Q Consensus 114 alr~kik~ledk~~ai~~ei~~L~eEl~a~~e~ 146 (377)
.....++.+++++..++.++..+..+..++.+.
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=88.28 E-value=12 Score=32.28 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=4.0
Q ss_pred hhhHHHHHHh
Q 017105 7 EMEPLHQALG 16 (377)
Q Consensus 7 Em~~lq~aL~ 16 (377)
.|..+...+.
T Consensus 7 ~~~~l~~~~~ 16 (284)
T 1c1g_A 7 KMQMLKLDKE 16 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHH
Confidence 3444444443
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.99 E-value=15 Score=45.77 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=27.3
Q ss_pred hhHhhhhhHHHHHH----hhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhc
Q 017105 2 DDKRKEMEPLHQAL----GKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHE 50 (377)
Q Consensus 2 ~~K~~Em~~lq~aL----~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~ 50 (377)
.+|++++...++.| .||.++.. .|+++...+..++-.+...
T Consensus 1909 ~~K~~el~~~~~rl~~GL~KL~et~~--------~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1909 NEKRDQLEEEQLHLNIGLKKLRDTEA--------QVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 45777776655555 58887554 3777777777777766554
No 8
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.93 E-value=5.1 Score=33.07 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105 110 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 170 (377)
Q Consensus 110 KE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq 170 (377)
.+++.++..|..++..+..++.++..|..++..-...|..+=.....+-.++.+..+..|+
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555566888888899999999999999999999999999999998886
No 9
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.17 E-value=9 Score=32.49 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=52.9
Q ss_pred hhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105 89 GKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 164 (377)
Q Consensus 89 ~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~ 164 (377)
+.++.++++++. +|+.|+.+++.+. ......+..+...|..|..++..-...++.|...-..||.+....
T Consensus 11 d~rD~~Ie~Lkr---eie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 11 DEKDHLIERLYR---EISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CTHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555543 5666666666664 234456777889999999999999999999999999999887754
No 10
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.16 E-value=8.9 Score=32.33 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 017105 111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 178 (377)
Q Consensus 111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ka 178 (377)
+++.+..++..+++.+.+...+|+.|..+... +++..+.|..|+.|.+--..+|..-|.+.-++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~I~vLkaQv~IY~~DF~aERadREkl 88 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAERHAREKL 88 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Confidence 45555566666666667777777777776554 67777899999999999999999998877763
No 11
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.08 E-value=13 Score=32.00 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=34.2
Q ss_pred hhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 107 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 107 ~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
.++.+.+.+...+..+..++..++.++.+++.+.+.+.....+.-..++.|..+.-...
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555666666666666666666666666666666655554443
No 12
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.57 E-value=24 Score=29.42 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017105 147 RDKAFANIKELRKQRDE 163 (377)
Q Consensus 147 rd~Aye~i~~LRkq~dE 163 (377)
|..+=..+..||+..|.
T Consensus 64 r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccH
Confidence 34444444444444443
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.65 E-value=15 Score=31.70 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHHH
Q 017105 32 SEEELDDLIRSLQYRI 47 (377)
Q Consensus 32 S~eeiD~~I~~Le~~i 47 (377)
+++-|..--.-|+.+|
T Consensus 26 ~ee~L~~vA~~vd~km 41 (138)
T 3hnw_A 26 SEEYLQRVASYINNKI 41 (138)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4454554444444443
No 14
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=78.22 E-value=24 Score=28.01 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=47.1
Q ss_pred HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 97 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 97 qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
.+..+..++..++..+.......+.++.+...+-.+...|+.++..+-+.+...-.....|-.++.+.+
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777777878777777788888877766666666666555555555555544
No 15
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=77.14 E-value=38 Score=29.85 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=38.0
Q ss_pred hhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017105 92 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 171 (377)
Q Consensus 92 e~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~ 171 (377)
+.+.++|+.+ ...+......-...+-.+..+...|+.|..++..........-..+...-.++....+.||..
T Consensus 73 d~yEeqIk~L-------~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 73 DKYEEEIKVL-------SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 3456666663 333333333333333334444445555555555444444444444444444444456677776
Q ss_pred HHHHHH
Q 017105 172 RALLNE 177 (377)
Q Consensus 172 r~~~~k 177 (377)
-..++.
T Consensus 146 ~~~~~~ 151 (155)
T 2efr_A 146 ENEVAR 151 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 16
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=76.24 E-value=14 Score=27.20 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 113 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 155 (377)
Q Consensus 113 dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~ 155 (377)
+.+...+..|..++..+..++..|..+..++.+.=.+|..+|+
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444445555555555555555555555555555443
No 17
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.21 E-value=8.9 Score=38.45 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=50.5
Q ss_pred ccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 102 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 102 ~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
+.+-+.|..++..++..+.++..++.....++..+.+++......|...|..+..|+..
T Consensus 2 ~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44567788888888888888888899999999999999999999999999999999753
No 18
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=73.77 E-value=39 Score=29.85 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=49.8
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 168 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~f 168 (377)
.|..|+.++..++.+|..+...+..-.+.+..|++|+.+++-.-+.+-..+..|.++-+..-.-|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888888888888888888888887777777777877665554433
No 19
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=72.76 E-value=22 Score=28.01 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 131 EEIEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 131 ~ei~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
..+..|..++.++....+.+|+.+-.|-.
T Consensus 56 ~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 56 EQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888877744
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.00 E-value=46 Score=29.40 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=43.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105 119 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 170 (377)
Q Consensus 119 ik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq 170 (377)
+..+......+..++..|..++..-...|..|=.....+-.++.+..+..|+
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566778888999999999999999999999999999999998886
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=71.56 E-value=38 Score=27.24 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=4.4
Q ss_pred hhhHHhHHHHH
Q 017105 106 DGVKKESQAVW 116 (377)
Q Consensus 106 D~LKKE~dalr 116 (377)
|.||+.++.++
T Consensus 5 d~iKkKm~~lk 15 (101)
T 3u59_A 5 EAIKKKMQMLK 15 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 22
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=71.34 E-value=12 Score=37.16 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=49.0
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.+|+.++.++..++..+..++..+..+..++..|.+++..-...|...|..++.|+..
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3567788888888888888888889999999999999999999999999999998743
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.01 E-value=42 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=14.4
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 118 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 155 (377)
Q Consensus 118 kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~ 155 (377)
.++.++++......+|.+|+....-+-...+.+-..+.
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344443333333333333333333
No 24
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=68.30 E-value=40 Score=26.64 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 131 EEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 131 ~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.++..|...++.++-.|-..=..+.+|..+
T Consensus 49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 49 NTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 25
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.62 E-value=35 Score=27.05 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017105 111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 177 (377)
Q Consensus 111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~k 177 (377)
+.+.+..++..++.+-..+...|..|+.++.+....++.+-.++..|-..+|-+-....+.|.-+.+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444556667777777777788888888888888888888888888877777777666666655544
No 26
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=66.00 E-value=21 Score=36.17 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 134 EALQQEVNDVAEKRDKAFANIKELRKQR 161 (377)
Q Consensus 134 ~~L~eEl~a~~e~rd~Aye~i~~LRkq~ 161 (377)
..|.++...+.++...+-+.+..+-.++
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.68 E-value=57 Score=27.06 Aligned_cols=61 Identities=10% Similarity=0.137 Sum_probs=31.0
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
|+.++-..+..+.+...--..-..+..++..|...++.++-.|-.+=..+..|..++.=..
T Consensus 43 ldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 43 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444332222222334456666666666666666666666666666544333
No 28
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=63.44 E-value=49 Score=34.03 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=42.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHH-----------HH
Q 017105 64 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALD-----------EE 132 (377)
Q Consensus 64 I~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~-----------~e 132 (377)
|+-++...+.|..+...++- . ..-...+.+-.++.+.-.+..+.+.+++..+.++..+..+. .+
T Consensus 43 ~~~ir~n~~~v~~~l~~R~~-~----~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~ 117 (501)
T 1wle_A 43 MESLCAYPEDAARALDLRKG-E----LRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQ 117 (501)
T ss_dssp HHHHHHSHHHHHHHHHHHTC-S----CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHH
T ss_pred HHHHHhCHHHHHHHHHHcCC-C----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccc
Confidence 55555556655555554432 0 00011233333333333444444444444444444444322 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 133 IEALQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 133 i~~L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
...|.++...+.++...+.+.+..+-.+++
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555443
No 29
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=63.11 E-value=27 Score=25.58 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=25.3
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD 148 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd 148 (377)
++.|-.+++.+..++..|...+.+++.++..-.+|-..++.+.|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555555555555666666666666666665554
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.81 E-value=62 Score=25.78 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=22.9
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
|+.++++++.+-..+......+......|..+-..+.+.+..--++|+.|-.
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444433
No 31
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.50 E-value=32 Score=34.81 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 017105 58 KQILREIKQLEGTREKVMA 76 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~~V~a 76 (377)
+.++.++.+|+..|..+..
T Consensus 41 r~~~~~~~~l~~~~n~~sk 59 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAV 59 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777788777776644
No 32
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=60.23 E-value=51 Score=26.04 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017105 129 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 163 (377)
Q Consensus 129 i~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE 163 (377)
+...+..+...+..=...|..+=..+..||+..|.
T Consensus 26 ~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 26 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333344444444444455555555555554443
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.22 E-value=63 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=17.2
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 150 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~A 150 (377)
|++||-+-..+......+...-..+..+...|..++.......+..
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 34
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=58.87 E-value=74 Score=26.05 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 017105 111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 178 (377)
Q Consensus 111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ka 178 (377)
+++.+..++..+++-+.+.+..|+.|.++. .......+.+.-|+.|.+--..+|.--|.+.-++
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~----~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl 66 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEA----EQHKIVMETVPVLKAQADIYKADFQAERHAREKL 66 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666676666533 3445556888999999999999999888877763
No 35
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=58.79 E-value=67 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 136 LQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 136 L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
...++..+..........+..|..+..
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334433333
No 36
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=54.71 E-value=44 Score=34.34 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 017105 58 KQILREIKQLEGTREKVMA 76 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~~V~a 76 (377)
+.++.++.+|+..|..+..
T Consensus 43 r~~~~~~~~l~~~rn~~sk 61 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQK 61 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566677777777665543
No 37
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=53.95 E-value=29 Score=27.04 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=33.5
Q ss_pred hhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 017105 90 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 169 (377)
Q Consensus 90 ~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fy 169 (377)
|+..+..++..+..||+.|..-.-.+|+++- ++..++.. |+.+. ..+-.++..|-+.+...++-|-
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLi----KYtelnKK---Le~~~-------~~~q~s~~~l~k~~~d~~~~~~ 69 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLE----KYVDITKK---LEDQN-------LNLQIKISDLEKKLSDANSTFK 69 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHH-------HHHHHHHHHHHHHTTCC-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHH-------HHhhhhhHHHHhhccccchhhH
Confidence 4455666677777777777777777777663 23333332 22222 2333445556555555555554
Q ss_pred H
Q 017105 170 Q 170 (377)
Q Consensus 170 q 170 (377)
+
T Consensus 70 ~ 70 (74)
T 2q6q_A 70 E 70 (74)
T ss_dssp -
T ss_pred h
Confidence 3
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.09 E-value=2.1e+02 Score=29.95 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHh
Q 017105 58 KQILREIKQLEGT 70 (377)
Q Consensus 58 Kk~L~EI~~L~~~ 70 (377)
+-+..-|+.|+.+
T Consensus 60 rDltkrINELKnq 72 (562)
T 3ghg_A 60 QDFTNRINKLKNS 72 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 3333334443333
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=53.09 E-value=88 Score=25.20 Aligned_cols=11 Identities=27% Similarity=0.272 Sum_probs=4.5
Q ss_pred hhHHhHHHHHH
Q 017105 107 GVKKESQAVWA 117 (377)
Q Consensus 107 ~LKKE~dalr~ 117 (377)
.||+.++.++-
T Consensus 6 aIKkKm~~lk~ 16 (101)
T 3u1c_A 6 AIKKKMQMLKL 16 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 40
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=52.24 E-value=26 Score=35.01 Aligned_cols=19 Identities=42% Similarity=0.657 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017105 129 LDEEIEALQQEVNDVAEKR 147 (377)
Q Consensus 129 i~~ei~~L~eEl~a~~e~r 147 (377)
+++++..|.+++.++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 80 LKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 41
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=52.11 E-value=91 Score=25.05 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=36.5
Q ss_pred hccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 101 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 101 ~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
+..+|..|+.+-..+...|..++..-..++.+|..+..+...+...=...+...+.++-+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666665555555554444443
No 42
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.85 E-value=24 Score=36.32 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017105 136 LQQEVNDVAEKRDKAFANIKEL 157 (377)
Q Consensus 136 L~eEl~a~~e~rd~Aye~i~~L 157 (377)
|.++...+.++...+-+.+..|
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.51 E-value=1e+02 Score=25.25 Aligned_cols=66 Identities=24% Similarity=0.370 Sum_probs=46.3
Q ss_pred hccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhH
Q 017105 101 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ-RDEGNA 166 (377)
Q Consensus 101 ~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq-~dE~n~ 166 (377)
++.+++.+|.+++.+...+..+..++..+...+..-...+..+-..+...-.++-.|-.. |++.|.
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN 69 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777777777777777777777777777766 566664
No 44
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=50.45 E-value=1.1e+02 Score=27.28 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Q 017105 146 KRDKAFANIKELRKQRDEGNAYF 168 (377)
Q Consensus 146 ~rd~Aye~i~~LRkq~dE~n~~f 168 (377)
..++...+|..||.++......|
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544433
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.65 E-value=1.7e+02 Score=28.63 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 017105 129 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 168 (377)
Q Consensus 129 i~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~f 168 (377)
.+.+....+.+.+.+.+..+.....+..+-.+..+.+..|
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3344444444555555555555555555555555555433
No 46
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=48.89 E-value=81 Score=25.81 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=33.9
Q ss_pred hhccchhhhHHhHHHHH---HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 100 LMGSDLDGVKKESQAVW---AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 100 ~~~~eLD~LKKE~dalr---~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
.+...||.|+.++-..+ ..+.-|...+.-+..++.+=+..+..+...+...-..+..|..+.+..+
T Consensus 20 ~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 20 AKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544444 2333344444555556666666666666666666666666666555444
No 47
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=48.72 E-value=55 Score=32.60 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 133 IEALQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 133 i~~L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
...|.++...+.+....+-+.+..+-.+++
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 48
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=47.68 E-value=1.5e+02 Score=26.42 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=35.8
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
+..|...++.-|.......+.+..+...+.+|..+++.+......+....+.|-..+....
T Consensus 71 ~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 71 YYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555666666666666666666666666666666655544444
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=46.66 E-value=1.5e+02 Score=26.14 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=13.6
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIE 134 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~ 134 (377)
..++.|+-++.++.-.++.+++++..+.++-.
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 50
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=46.60 E-value=93 Score=31.95 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017105 127 KALDEEIEALQQEVNDVAEKRD 148 (377)
Q Consensus 127 ~ai~~ei~~L~eEl~a~~e~rd 148 (377)
..+++++..|.+++.++.+..+
T Consensus 126 ~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 126 REIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 51
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=46.50 E-value=1.3e+02 Score=25.23 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=29.4
Q ss_pred HHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 97 QVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 161 (377)
Q Consensus 97 qiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~ 161 (377)
.+..+..+++.++.++...+..+ +.+.-++.++..-..++.+=+.-|.++-.++..|-.++
T Consensus 39 aL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 39 ALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 33344445555666665544422 33444444444444444444445555555444444443
No 52
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=45.61 E-value=1.1e+02 Score=23.89 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=41.3
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017105 115 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 177 (377)
Q Consensus 115 lr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~k 177 (377)
+..++..++.+-..+...+..|+..+......++..-.+++.|-..+|-+-....+.|.-+.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344566666666667777777777777777777777777777777776666655555554433
No 53
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=42.89 E-value=54 Score=27.36 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHH
Q 017105 76 ANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKI 119 (377)
Q Consensus 76 anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~ki 119 (377)
++.+.++.+.++-.+-..+..++..+...++.|.+++|-.-.+|
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL 48 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333334444444444333
No 54
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=42.87 E-value=68 Score=31.95 Aligned_cols=63 Identities=22% Similarity=0.455 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHH
Q 017105 58 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQ 137 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~ 137 (377)
+.++.++.+|+..|..+.. .++.. +..+.+.+.|+.+...++..|+.++..+.++.+++..+.
T Consensus 40 r~~~~~~~~l~~~~n~~sk----------~i~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSK----------EIGKL-------KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HTTGG-------GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHH-------hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888776644 22221 122344556677777777777666666666666555543
No 55
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.74 E-value=89 Score=28.54 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=8.9
Q ss_pred HHHHHHhhccchhhhHHhHHHHHHHHHh
Q 017105 94 IQDQVKLMGSDLDGVKKESQAVWAKISH 121 (377)
Q Consensus 94 iqeqiK~~~~eLD~LKKE~dalr~kik~ 121 (377)
+++|+..-+..|..|.-|...+...+..
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~ 38 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDT 38 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443334444455555544444433
No 56
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.23 E-value=2e+02 Score=29.46 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 131 EEIEALQQEVNDVAEKRDKAFANIKE 156 (377)
Q Consensus 131 ~ei~~L~eEl~a~~e~rd~Aye~i~~ 156 (377)
..|..|+..++.+..+.+..-..+..
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444444333
No 57
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.88 E-value=1.5e+02 Score=24.63 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017105 127 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 164 (377)
Q Consensus 127 ~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~ 164 (377)
..+...+....+....+...+.++-..+..|+++.+..
T Consensus 86 ~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 86 KEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555566655544
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.50 E-value=2.6e+02 Score=27.20 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=41.8
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 176 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ 176 (377)
|+++++.++..+-+++..-..++--+-.|++-|++-..+-. ..|++|-.+..+.|...-+.+..+.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666677777777777666555422 4777777777777766555554443
No 59
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=41.49 E-value=66 Score=28.26 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=35.9
Q ss_pred hhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017105 100 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 162 (377)
Q Consensus 100 ~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~d 162 (377)
.+...+.+++-.+++.+..++.++..+.++...+..|..++..+.+..+-.-++.+.||..++
T Consensus 63 ~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLe 125 (146)
T 2xnx_M 63 VLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLD 125 (146)
T ss_dssp HHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC------------
T ss_pred hhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355667788888888888887777777777777777777666665555444444455554433
No 60
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=41.23 E-value=1.3e+02 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=6.4
Q ss_pred HHHHHHHhHHHH
Q 017105 63 EIKQLEGTREKV 74 (377)
Q Consensus 63 EI~~L~~~R~~V 74 (377)
||..|+..|.++
T Consensus 22 ev~~lKq~RRtl 33 (90)
T 2wt7_B 22 EVIRLKQKRRTL 33 (90)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 455555555544
No 61
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=41.21 E-value=69 Score=32.87 Aligned_cols=22 Identities=0% Similarity=-0.179 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 017105 58 KQILREIKQLEGTREKVMANAA 79 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~~V~anaa 79 (377)
+.++.++.+|+..|..+..-.+
T Consensus 47 r~~~~~~~~l~~~rN~~sk~i~ 68 (484)
T 3lss_A 47 RRTQFLTEASKKLINICSKAVG 68 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888887766443
No 62
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.85 E-value=77 Score=27.45 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017105 127 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 170 (377)
Q Consensus 127 ~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq 170 (377)
.-++.++..|..++..-...|..|=.....+-.++.+..+..|+
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 85 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777788888888888888888889999999999888885
No 63
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.47 E-value=99 Score=24.66 Aligned_cols=37 Identities=8% Similarity=0.285 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017105 127 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 163 (377)
Q Consensus 127 ~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE 163 (377)
..++......+.++..+..+-+....++..|+.+..+
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444433
No 64
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=38.44 E-value=3.2e+02 Score=27.69 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=55.5
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh-------------hhHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEV-NDVAEKRDKAFANIKELRKQRDE-------------GNAYF 168 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl-~a~~e~rd~Aye~i~~LRkq~dE-------------~n~~f 168 (377)
+.||.|+.+.|-....|+.-+.-+..+-..|+.|..-. .+-..+++ ..+++|..|..- .--.|
T Consensus 523 akldqlknqvdgyeksikkqesaiyelhnqidalrkayytehkgqin---kalqelkeqispviqnketdpetksrlqhf 599 (761)
T 4fye_A 523 AKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALRKAYYTEHKGQIN---KALQELKEQISPVIQNKETDPETKSRLQHF 599 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHhcChhhcCCCCChhHHHHHHHH
Confidence 45788888888888888888888888888888876532 22233333 345556655321 12389
Q ss_pred HHHHHHHHHHHHHHhcc
Q 017105 169 FQYRALLNEAKAMSVKK 185 (377)
Q Consensus 169 yq~r~~~~karela~~~ 185 (377)
|+++.-+..|++|-+..
T Consensus 600 ynscayltqaqelyyen 616 (761)
T 4fye_A 600 YNSCAYLTQAQELYYEN 616 (761)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999987643
No 65
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.00 E-value=40 Score=24.56 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=16.6
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDE 131 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ 131 (377)
.+++.|+.+.+.++.++..|......+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777666666554444444433
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.94 E-value=3e+02 Score=28.89 Aligned_cols=11 Identities=0% Similarity=0.214 Sum_probs=4.5
Q ss_pred HHHhHHHHHHH
Q 017105 67 LEGTREKVMAN 77 (377)
Q Consensus 67 L~~~R~~V~an 77 (377)
++..|.+|..+
T Consensus 66 INELKnqLEdl 76 (562)
T 3ghg_A 66 INKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 67
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.93 E-value=33 Score=24.29 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=21.2
Q ss_pred hhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHH
Q 017105 91 KEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEG 124 (377)
Q Consensus 91 ke~iqeqiK~~~~eLD~LKKE~dalr~kik~led 124 (377)
++.+..++.-.+.+|+-...++..++.+++.|++
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666677777777777666666553
No 68
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.49 E-value=1.8e+02 Score=24.10 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=6.8
Q ss_pred chhhhHHhHHHHHHHHHh
Q 017105 104 DLDGVKKESQAVWAKISH 121 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ 121 (377)
+|++++.....+...|.+
T Consensus 53 el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 53 ELQSQLSMKASLENSLEE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333333333333333333
No 69
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.40 E-value=1.8e+02 Score=25.86 Aligned_cols=6 Identities=50% Similarity=0.822 Sum_probs=1.9
Q ss_pred cCchHH
Q 017105 52 IPLSEE 57 (377)
Q Consensus 52 m~L~EE 57 (377)
+.|.+|
T Consensus 66 LnLT~E 71 (175)
T 3lay_A 66 SPLTTE 71 (175)
T ss_dssp --CCHH
T ss_pred ccCCHH
Confidence 344444
No 70
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.36 E-value=1.9e+02 Score=24.16 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=37.5
Q ss_pred hhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 100 LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 100 ~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
.+......|.-+.+..+.++.... ......+..|+.++..+...++..-..|+.|=-
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666666665554432 334557888999999988888887777777643
No 71
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.32 E-value=1.6e+02 Score=23.18 Aligned_cols=50 Identities=28% Similarity=0.279 Sum_probs=30.8
Q ss_pred hHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 108 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 108 LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
.|.-++.++ ++|..+++.+..+...|+.|+.++...+.+.-..+..|-.+
T Consensus 24 TKNaLnvvk---~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 24 TKNALNIVK---NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 55666777777888888888888888888777777666544
No 72
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=35.10 E-value=3.2e+02 Score=26.49 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcCchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhh
Q 017105 30 CSSEEELDDLIRSLQYRIQHEIIPLSEE-KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGV 108 (377)
Q Consensus 30 ~~S~eeiD~~I~~Le~~i~h~sm~L~EE-Kk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~L 108 (377)
+....++...|...-..+-.|.++..+= +.+-.+|..+ -+... ....+.+....+...|+++
T Consensus 347 ~p~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~---l~~~~--------------~~~e~~~~~~~~~~~~~~~ 409 (471)
T 3mq9_A 347 IPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAA---RDGLR--------------AVMEARNVTHLLQQELTEA 409 (471)
T ss_dssp STTHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHH---HHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---HHhhH--------------HHHHhhhHHHHHHHHHHHH
Confidence 3444566666666666777777765332 2222222211 01010 0111223334455556667
Q ss_pred HHhHHHHHHHHHhHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 109 KKESQAVWAKISHLEGK-----------VKALDEEIEALQQEVNDVAEKRDKAFANIKELR 158 (377)
Q Consensus 109 KKE~dalr~kik~ledk-----------~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LR 158 (377)
++-...++.+-..++-- ...-.+.|..|..+...++.+.+.+-+.+..||
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 410 QKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777766655444322 222223445555555555555444444444443
No 73
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=34.20 E-value=79 Score=24.63 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=35.9
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 163 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE 163 (377)
.+|++|++++..+..+--+..-.+--+-++++.=-+++..+-+.--.+|..+..+|+++..
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~ 63 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTAS 63 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666655554433333333344444444455667777777788888888877654
No 74
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.29 E-value=66 Score=25.78 Aligned_cols=37 Identities=14% Similarity=0.324 Sum_probs=27.6
Q ss_pred HHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHH
Q 017105 83 KIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKI 119 (377)
Q Consensus 83 ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~ki 119 (377)
.+.+++.++..+.++|..++.+|..+|.+.+.++.-.
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888887777777777777776543
No 75
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=31.73 E-value=94 Score=30.92 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017105 127 KALDEEIEALQQEVNDVAEKRD 148 (377)
Q Consensus 127 ~ai~~ei~~L~eEl~a~~e~rd 148 (377)
..+++++..|.+++.++.+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 74 KALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.25 E-value=1.9e+02 Score=22.73 Aligned_cols=27 Identities=11% Similarity=0.195 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHh
Q 017105 74 VMANAAMRAKIQESMGKKEDIQDQVKL 100 (377)
Q Consensus 74 V~anaa~~~ki~~s~~~ke~iqeqiK~ 100 (377)
+..+......+...+..-+...+.+..
T Consensus 22 ~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 22 LQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333333333333334433
No 77
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=31.18 E-value=1.9e+02 Score=22.74 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=27.7
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 114 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 161 (377)
Q Consensus 114 alr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~ 161 (377)
.+...+..++..+...+.+-..+..++.-+.+.-|...-++..||..+
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444555555556666666666666666666666666554
No 78
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.32 E-value=1.5e+02 Score=23.44 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=14.6
Q ss_pred hhhhHHHHHHhhccchhhhHHhHHHHHHHH
Q 017105 90 KKEDIQDQVKLMGSDLDGVKKESQAVWAKI 119 (377)
Q Consensus 90 ~ke~iqeqiK~~~~eLD~LKKE~dalr~ki 119 (377)
.++.++.+|..+..+-..|+-++.+++...
T Consensus 31 vk~DLI~rvdELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 31 VKNDLIAKVDELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455555554444444444444444443
No 79
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=30.05 E-value=98 Score=24.66 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=39.0
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 165 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n 165 (377)
+|++|++++.-+..+--+..-.+--+-++++.=-+++..+-+.--.+|..+..+|+++....
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777666665554444444444455555555667777778888888888888776543
No 80
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=29.70 E-value=3.1e+02 Score=24.62 Aligned_cols=19 Identities=16% Similarity=0.571 Sum_probs=9.8
Q ss_pred HHHHHHHHHhCChhhHHHHHHH
Q 017105 197 EVEKYMTLWNNNKAFRDDYEKR 218 (377)
Q Consensus 197 eVe~fm~lwn~~~~FR~dY~k~ 218 (377)
+|+.|+... .+.|..|+-|
T Consensus 159 dv~~Fl~~y---~~~R~~yH~R 177 (192)
T 2p22_C 159 DLDQFIKNY---LDIRTQYHLR 177 (192)
T ss_dssp HHHHHHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHH---HHHHHHHHHH
Confidence 444444333 4556667644
No 81
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.11 E-value=92 Score=24.31 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=10.3
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHH
Q 017105 119 ISHLEGKVKALDEEIEALQQEVN 141 (377)
Q Consensus 119 ik~ledk~~ai~~ei~~L~eEl~ 141 (377)
|..++..+...+..|..|+.+++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 82
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=28.25 E-value=2.6e+02 Score=28.73 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 129 LDEEIEALQQEVNDVAEKRDKAFANIKELRK 159 (377)
Q Consensus 129 i~~ei~~L~eEl~a~~e~rd~Aye~i~~LRk 159 (377)
+-..|..|+.-++.+..+.+..-..+..|..
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSAQME 191 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3345555555555555555555555554444
No 83
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.18 E-value=2.6e+02 Score=23.20 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 114 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 158 (377)
Q Consensus 114 alr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LR 158 (377)
.....|..++..+..++.++.....+...+-..+-..--+|-..|
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555544455444444444444444333
No 84
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.59 E-value=35 Score=21.61 Aligned_cols=19 Identities=47% Similarity=0.655 Sum_probs=15.1
Q ss_pred hhHhhhhhHHHHHHhhhhc
Q 017105 2 DDKRKEMEPLHQALGKLRT 20 (377)
Q Consensus 2 ~~K~~Em~~lq~aL~Klr~ 20 (377)
|+=-+|++.||+.|++||.
T Consensus 4 delykeledlqerlrklrk 22 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3446789999999998874
No 85
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=25.82 E-value=1.6e+02 Score=26.23 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017105 133 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 177 (377)
Q Consensus 133 i~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~k 177 (377)
+..||.+++.+.++ +..++..|..+++....-+|+.|+.+-.
T Consensus 5 L~~iQ~e~~~l~~~---~~~e~~~le~ky~~~~~p~y~kR~~iI~ 46 (193)
T 3kyp_A 5 FEDIQKDIEQLDIK---CAHEQMNIQKQYDEKKKPLFEKRDEIIQ 46 (193)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 44555555555553 4456677788888888888888877765
No 86
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.24 E-value=1.7e+02 Score=23.40 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=28.3
Q ss_pred hHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 93 DIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 158 (377)
Q Consensus 93 ~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LR 158 (377)
.++..|+.+...++.|.+++..+++.++... -.++-...-.+--+.+++.+.-+.....|-.+|
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~--~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRD--AKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 3444555544444444444444444332210 122223333344455555555555555554443
No 87
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.86 E-value=2.4e+02 Score=21.76 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=11.6
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 119 ISHLEGKVKALDEEIEALQQEVNDVAEKRDK 149 (377)
Q Consensus 119 ik~ledk~~ai~~ei~~L~eEl~a~~e~rd~ 149 (377)
|..++..+..++.++.....+...+-..+-.
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~ 65 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQDLLNVKMA 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333333333
No 88
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=23.91 E-value=3.7e+02 Score=25.32 Aligned_cols=43 Identities=14% Similarity=0.340 Sum_probs=20.2
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR 147 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~r 147 (377)
|.+|-.++..+...-+.+-+++..+..+--.|..++..+..+.
T Consensus 179 I~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Ri 221 (242)
T 3uux_B 179 IRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRL 221 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555555555555554444443
No 89
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.65 E-value=65 Score=26.32 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=11.2
Q ss_pred CchHHHHHHHHHHHHHHhHH
Q 017105 53 PLSEEKQILREIKQLEGTRE 72 (377)
Q Consensus 53 ~L~EEKk~L~EI~~L~~~R~ 72 (377)
...+.+++.+||-.|+....
T Consensus 21 ~a~~~~~lk~E~~~lk~E~~ 40 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFNN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666655544
No 90
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.34 E-value=3.2e+02 Score=22.61 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=5.3
Q ss_pred HHhHHHHHHHHHhHH
Q 017105 109 KKESQAVWAKISHLE 123 (377)
Q Consensus 109 KKE~dalr~kik~le 123 (377)
..++++-+..+...+
T Consensus 54 ~~qL~~E~~~l~e~E 68 (129)
T 2fxo_A 54 QLQVQAEQDNLADAE 68 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHH
Confidence 333333333333333
No 91
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.24 E-value=2.8e+02 Score=22.02 Aligned_cols=50 Identities=10% Similarity=0.341 Sum_probs=27.6
Q ss_pred hhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 017105 87 SMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 143 (377)
Q Consensus 87 s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~ 143 (377)
-+-.++.|++.+ +.+|.......+++.+.+.+...+..++..|..++.++
T Consensus 22 EIqAKQ~i~EEL-------s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 22 EVLTRQSLSREM-------EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455554444 33555555566666665555556666666666655553
No 92
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=23.15 E-value=2.7e+02 Score=21.74 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=26.6
Q ss_pred cchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 103 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 157 (377)
Q Consensus 103 ~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~L 157 (377)
.++..+..++..++..+...+...+.+......|..+.+.+......+.+....|
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L 68 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEEL 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555555555555544444444455555555555555554433333333333
No 93
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.13 E-value=2e+02 Score=21.45 Aligned_cols=48 Identities=31% Similarity=0.614 Sum_probs=32.3
Q ss_pred hHHHHHHhhc--cchhhhHHhHHHHHHHHHhHH--HhHHHHHHHHHHHHHHH
Q 017105 93 DIQDQVKLMG--SDLDGVKKESQAVWAKISHLE--GKVKALDEEIEALQQEV 140 (377)
Q Consensus 93 ~iqeqiK~~~--~eLD~LKKE~dalr~kik~le--dk~~ai~~ei~~L~eEl 140 (377)
++.+.++.++ ..|.+|++.-..++.+|..+- -.++.+..++..|.++.
T Consensus 13 aleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 13 ALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp HHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4566777774 568899999999988886653 33455555555555544
No 94
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.51 E-value=2.6e+02 Score=22.60 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=11.7
Q ss_pred hhhhhhhhHHHHHHhhccchhhhHHhHH
Q 017105 86 ESMGKKEDIQDQVKLMGSDLDGVKKESQ 113 (377)
Q Consensus 86 ~s~~~ke~iqeqiK~~~~eLD~LKKE~d 113 (377)
-+||.-.++..++...+..||.|+.++.
T Consensus 52 P~~GD~~s~~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 52 PQMGDPASLEPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp GGGCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454444444444443333333333333
No 95
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=22.38 E-value=3.2e+02 Score=22.27 Aligned_cols=74 Identities=8% Similarity=0.120 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHH
Q 017105 126 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSEVE 199 (377)
Q Consensus 126 ~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~~--~v~~l~~~~~~eVe 199 (377)
+..++.+|+.+..++-.+..+|-..-..+-.++......--.--.-..++..+..++..+ +-..++.+...-++
T Consensus 14 L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~Ii~ 89 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQIKRLRKLAIDTHFDPDFAEKFLKFIIK 89 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444555555555555555556655555665566542211111222234555666665443 33445555444333
No 96
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=22.34 E-value=4e+02 Score=23.48 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=21.7
Q ss_pred hhhHHhHHHHHHHHHhHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 106 DGVKKESQAVWAKISHLEGKVKA----------LDEEIEALQQEVNDVAEKRDKAFAN 153 (377)
Q Consensus 106 D~LKKE~dalr~kik~ledk~~a----------i~~ei~~L~eEl~a~~e~rd~Aye~ 153 (377)
+..+...+++..+++.++.++.. ....++.+..++..++..-|+||..
T Consensus 72 ~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A 129 (158)
T 3tul_A 72 DTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDA 129 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333 3334444555555555555554443
No 97
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=22.20 E-value=4.2e+02 Score=26.15 Aligned_cols=73 Identities=8% Similarity=0.127 Sum_probs=36.3
Q ss_pred hhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhh
Q 017105 90 KKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF-----ANIKELRKQRDEG 164 (377)
Q Consensus 90 ~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Ay-----e~i~~LRkq~dE~ 164 (377)
.|..+..+-..+-..+..+-..++.++..+ ...+...=.+|+.|-.+...++.++..+- ..=..|+++||..
T Consensus 65 ~R~~vl~~a~~La~~~n~~~~~L~~~~~~~---n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~l 141 (463)
T 2d4y_A 65 ARQALIGKAEGLVNQFKTTDQYLRDQDKQV---NIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQL 141 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHH
Confidence 344444444444444444555555555322 33444455566666666666666665432 2334577776666
Q ss_pred h
Q 017105 165 N 165 (377)
Q Consensus 165 n 165 (377)
-
T Consensus 142 l 142 (463)
T 2d4y_A 142 V 142 (463)
T ss_dssp H
T ss_pred H
Confidence 4
No 98
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.06 E-value=3.3e+02 Score=27.88 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=4.4
Q ss_pred HHHHHHHHhHH
Q 017105 62 REIKQLEGTRE 72 (377)
Q Consensus 62 ~EI~~L~~~R~ 72 (377)
.+|-.|...|.
T Consensus 37 d~~~~ld~~~r 47 (484)
T 3lss_A 37 DAIIEADKKWR 47 (484)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 99
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=21.94 E-value=6.1e+02 Score=25.38 Aligned_cols=114 Identities=14% Similarity=0.208 Sum_probs=58.1
Q ss_pred hhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 017105 105 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 184 (377)
Q Consensus 105 LD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~karela~~ 184 (377)
+.-|...-..+-..++.+.+.+..+..-+...+.-+.......+.....+..|+..+. .+..+-..+...-++
T Consensus 237 leVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~----~~~e~l~i~~~i~e~--- 309 (413)
T 4hpq_C 237 FEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELR----KHEEYISVFEGISAL--- 309 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHH---
Confidence 4445555566666666666666666555555555555555555555555555555554 222222233333332
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhh
Q 017105 185 KDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQL 228 (377)
Q Consensus 185 ~~v~~l~~~~~~eVe~fm~lwn~~~~FR~dY~k~~~~S~~~R~~ 228 (377)
+....+-|...++.|-.|=.-=..|-.-|..+ +.-..||..
T Consensus 310 --l~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~l-L~Ev~RRr~ 350 (413)
T 4hpq_C 310 --IQKFKASCLEDIRQTRNLLDFYANFERSYHNL-LKEVKRRKE 350 (413)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 13455556555555555444445566666552 334444443
No 100
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.53 E-value=2.4e+02 Score=20.45 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=20.8
Q ss_pred hhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 017105 107 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 143 (377)
Q Consensus 107 ~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~ 143 (377)
+++.+++.+.++-..|-+-+...+.+|..|.++++.+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555555555555555556666666655543
No 101
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.39 E-value=2.9e+02 Score=21.45 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 017105 148 DKAFANIKELRKQRDE 163 (377)
Q Consensus 148 d~Aye~i~~LRkq~dE 163 (377)
+..-..|+.|+.++|.
T Consensus 50 ~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 50 DQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444455555544
No 102
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=21.27 E-value=4.1e+02 Score=23.15 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=24.2
Q ss_pred chhhhHHhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 104 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 150 (377)
Q Consensus 104 eLD~LKKE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~A 150 (377)
+||-|-+=+..-+.+.+++..+-.+-+++|..|..++.-+...-+++
T Consensus 33 EL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~ 79 (167)
T 4gkw_A 33 ELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKA 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444445555555555555556666666665554444443
No 103
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=21.03 E-value=36 Score=27.87 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=32.0
Q ss_pred hcCcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHH
Q 017105 49 HEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAK 118 (377)
Q Consensus 49 h~sm~L~EEKk~L~EI~~L~~~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~k 118 (377)
..|=...+..++..||-+|+.....+++ ||.|.-=--+.-++.-+..+|+.+++++.+-++.
T Consensus 24 p~s~~~~~~~~lk~E~~~lk~E~~stSa--------QDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~ 85 (94)
T 3vlc_E 24 PGNELSKKYLAKVKERHELKEFNNSISA--------QDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKA 85 (94)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHTTSCT--------TTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHH
T ss_pred cccHhHHHHHHHHHHHHHHHHHHhccch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677778888888888777554433 3333333233334444444444444444444433
No 104
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.79 E-value=1.6e+02 Score=29.68 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 123 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 158 (377)
Q Consensus 123 edk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LR 158 (377)
+.-+......|..|+..+......++..-..+..|.
T Consensus 97 ~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 97 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666555554444444444443
No 105
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=20.78 E-value=6.2e+02 Score=25.02 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=39.2
Q ss_pred hhhhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCc--CchHHHHHHHHHHHHHHhHH
Q 017105 6 KEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTRE 72 (377)
Q Consensus 6 ~Em~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm--~L~EEKk~L~EI~~L~~~R~ 72 (377)
..++.|...+..|+. +...+.+..++..|+..+....+ .-..=.++++|.+.|+..-.
T Consensus 9 ~~~~~~~~~~~~~~~---------~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~ 68 (365)
T 1gqe_A 9 NRIQDLTERSDVLRG---------YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVD 68 (365)
T ss_dssp HHHHHHHHHHHHHHH---------HTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------hcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 445555555554432 55688899999999999887765 23333677888888877744
No 106
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=20.61 E-value=7.5e+02 Score=25.92 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017105 137 QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 171 (377)
Q Consensus 137 ~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~ 171 (377)
..++..+......+|.....|+....++...|-+.
T Consensus 652 ~~~re~~~~~l~~ay~~y~el~~~l~eG~~FY~~L 686 (704)
T 2xs1_A 652 ANLREEVLKNLATAYDNFVELVANLKEGTKFYNEL 686 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777888888888999999999998888644333
No 107
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.36 E-value=2.7e+02 Score=27.47 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017105 111 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR 147 (377)
Q Consensus 111 E~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~r 147 (377)
++++++..|..+..+...+...+..+..++..+.++-
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554443
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.17 E-value=1.4e+03 Score=29.00 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017105 110 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 163 (377)
Q Consensus 110 KE~dalr~kik~ledk~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE 163 (377)
.++..+.+.+...+.++.++++.+..|.+.+..+.+.-+.+..+...|..+.+.
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444443
No 109
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.07 E-value=1.3e+02 Score=24.06 Aligned_cols=35 Identities=14% Similarity=0.371 Sum_probs=26.2
Q ss_pred HHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHH
Q 017105 83 KIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWA 117 (377)
Q Consensus 83 ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~ 117 (377)
.+.+++.++..+++.|..++.+|..++.+...++.
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888777777777777766664
Done!