Query 017105
Match_columns 377
No_of_seqs 106 out of 123
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 09:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017105.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017105hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efla1 a.238.1.4 (A:1-288) Fo 82.9 12 0.00085 31.2 16.9 29 40-68 11-39 (288)
2 d1seta1 a.2.7.1 (A:1-110) Sery 78.9 5.1 0.00037 30.6 8.7 19 58-76 38-56 (110)
3 d1seta1 a.2.7.1 (A:1-110) Sery 69.9 14 0.001 27.9 9.2 9 63-71 29-37 (110)
4 d2efka1 a.238.1.4 (A:10-288) C 59.4 43 0.0032 27.3 15.5 33 126-158 111-143 (279)
5 d1gqea_ e.38.1.1 (A:) Polypept 44.8 99 0.0072 28.0 11.9 59 5-72 5-65 (362)
6 d1gqea_ e.38.1.1 (A:) Polypept 44.2 1.1E+02 0.0082 27.6 12.7 29 175-203 77-105 (362)
7 d1qvra2 c.37.1.20 (A:149-535) 37.9 99 0.0072 28.0 10.8 8 198-205 378-385 (387)
8 d2d8da1 a.130.1.1 (A:3-82) Cho 27.2 94 0.0068 21.6 8.1 35 126-160 3-37 (80)
9 d1grja1 a.2.1.1 (A:2-79) GreA 24.8 1.1E+02 0.0083 21.9 6.9 65 51-127 2-69 (78)
10 d2ayua1 d.305.1.1 (A:70-370) N 22.1 1.3E+02 0.0093 26.5 8.2 44 133-176 27-70 (301)
11 d2e50a1 d.305.1.1 (A:1-222) Pr 22.0 1.5E+02 0.011 24.7 8.3 40 134-176 36-75 (222)
No 1
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.90 E-value=12 Score=31.19 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=13.5
Q ss_pred HHHHHHHHhhcCcCchHHHHHHHHHHHHH
Q 017105 40 IRSLQYRIQHEIIPLSEEKQILREIKQLE 68 (377)
Q Consensus 40 I~~Le~~i~h~sm~L~EEKk~L~EI~~L~ 68 (377)
...|..++.+|.-.+.+=..++++...++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~eRa~iE 39 (288)
T d2efla1 11 FDNLEKHTQWGIDILEKYIKFVKERTEIE 39 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444444444444443
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=78.88 E-value=5.1 Score=30.55 Aligned_cols=19 Identities=11% Similarity=0.434 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 017105 58 KQILREIKQLEGTREKVMA 76 (377)
Q Consensus 58 Kk~L~EI~~L~~~R~~V~a 76 (377)
+.++.++.+|+..|..+..
T Consensus 38 r~l~~~~e~l~~~rN~~sk 56 (110)
T d1seta1 38 QELKKRLQEVQTERNQVAK 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677788888888776543
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=69.93 E-value=14 Score=27.87 Aligned_cols=9 Identities=11% Similarity=0.154 Sum_probs=3.5
Q ss_pred HHHHHHHhH
Q 017105 63 EIKQLEGTR 71 (377)
Q Consensus 63 EI~~L~~~R 71 (377)
+|-.|...|
T Consensus 29 ~i~~ld~~r 37 (110)
T d1seta1 29 ALLALDREV 37 (110)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333343333
No 4
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.36 E-value=43 Score=27.34 Aligned_cols=33 Identities=6% Similarity=0.128 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 126 VKALDEEIEALQQEVNDVAEKRDKAFANIKELR 158 (377)
Q Consensus 126 ~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LR 158 (377)
+..+...+......+..+....+.++.....++
T Consensus 111 ~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~ 143 (279)
T d2efka1 111 GRRAQQQLENGFKQLENSKRKFERDCREAEKAA 143 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444333433333333333333
No 5
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=44.80 E-value=99 Score=28.03 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=43.9
Q ss_pred hhhhhHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHHHHhhcCc--CchHHHHHHHHHHHHHHhHH
Q 017105 5 RKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTRE 72 (377)
Q Consensus 5 ~~Em~~lq~aL~Klr~~~~A~~~~~~~S~eeiD~~I~~Le~~i~h~sm--~L~EEKk~L~EI~~L~~~R~ 72 (377)
..++..|...|..|+. +...+.+..++..|+.++....+ .-..=+++++|++.|+..-.
T Consensus 5 ~~~i~eL~~rl~~Lr~---------~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe 65 (362)
T d1gqea_ 5 NNRIQDLTERSDVLRG---------YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVD 65 (362)
T ss_dssp HHHHHHHHHHHHHHHH---------HTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------HcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666652 55689999999999999998887 33444788999999988844
No 6
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=44.20 E-value=1.1e+02 Score=27.63 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=15.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 017105 175 LNEAKAMSVKKDVQGLKELSNSEVEKYMT 203 (377)
Q Consensus 175 ~~karela~~~~v~~l~~~~~~eVe~fm~ 203 (377)
+..+.+++...+-.++...+..+++.+..
T Consensus 77 l~eL~Ela~ee~deel~~e~~~~l~~l~~ 105 (362)
T d1gqea_ 77 VSGLLELAVEADDEETFNEAVAELDALEE 105 (362)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Confidence 34444555555555666666666554433
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=37.88 E-value=99 Score=28.03 Aligned_cols=8 Identities=13% Similarity=0.779 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 017105 198 VEKYMTLW 205 (377)
Q Consensus 198 Ve~fm~lw 205 (377)
|-..++.|
T Consensus 378 IA~VVSrW 385 (387)
T d1qvra2 378 IAEIVSRW 385 (387)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 44445555
No 8
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=27.19 E-value=94 Score=21.61 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017105 126 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 160 (377)
Q Consensus 126 ~~ai~~ei~~L~eEl~a~~e~rd~Aye~i~~LRkq 160 (377)
+..++.+|+.+..++-++-.+|-..-..+-.+...
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~i~~~K~~ 37 (80)
T d2d8da1 3 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 37 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555566666666666666666666654
No 9
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.77 E-value=1.1e+02 Score=21.91 Aligned_cols=65 Identities=17% Similarity=0.319 Sum_probs=41.0
Q ss_pred CcCchHH--HHHHHHHHHHHH-hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccchhhhHHhHHHHHHHHHhHHHhHH
Q 017105 51 IIPLSEE--KQILREIKQLEG-TREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVK 127 (377)
Q Consensus 51 sm~L~EE--Kk~L~EI~~L~~-~R~~V~anaa~~~ki~~s~~~ke~iqeqiK~~~~eLD~LKKE~dalr~kik~ledk~~ 127 (377)
++||..| +++-.|+..|+. .|..|..-.+. .-+.|.. .-+++++.-|.++..+.++|..|++.+.
T Consensus 2 ~iplT~eg~~~L~~EL~~L~~~~rpei~~~I~~----Ar~~GDl--------sENaeY~aAKe~q~~~e~RI~eLe~~L~ 69 (78)
T d1grja1 2 AIPMTLRGAEKLREELDFLKSVRRPEIIAAIAE----AREHGDL--------KENAEYHAAREQQGFCEGRIKDIEAKLS 69 (78)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHTTCCG--------GGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHH----HHHcCCh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555 788889999987 56665442210 1111111 2367788888888888888888776664
No 10
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.14 E-value=1.3e+02 Score=26.46 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 017105 133 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 176 (377)
Q Consensus 133 i~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ 176 (377)
|.+|+.=.........+.+.++..|..++.....-+|+.|+.+-
T Consensus 27 v~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II 70 (301)
T d2ayua1 27 LLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRII 70 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 33333333333444456788999999999999999999998885
No 11
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.97 E-value=1.5e+02 Score=24.70 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 017105 134 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 176 (377)
Q Consensus 134 ~~L~eEl~a~~e~rd~Aye~i~~LRkq~dE~n~~fyq~r~~~~ 176 (377)
..||.+++.+.. ++..++..|..+++....-+|+.|+.+-
T Consensus 36 ~~iQ~e~~~l~~---e~~~e~~~le~k~~~~~~ply~~R~~iI 75 (222)
T d2e50a1 36 DEVQNEIDRLNE---QASEEILKVEQKYNKLRQPFFQKRSELI 75 (222)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 344444444443 3555667777777777777777777664
Done!