Query 017108
Match_columns 377
No_of_seqs 182 out of 518
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 3.9E-29 1.3E-33 193.7 6.7 61 262-323 2-62 (64)
2 2yus_A SWI/SNF-related matrix- 89.5 0.94 3.2E-05 35.5 6.6 48 264-317 15-62 (79)
3 2cu7_A KIAA1915 protein; nucle 87.8 1.4 4.8E-05 33.3 6.4 51 264-320 6-56 (72)
4 2yum_A ZZZ3 protein, zinc fing 82.3 2.1 7.1E-05 32.3 5.1 53 265-320 6-61 (75)
5 2hzd_A Transcriptional enhance 79.5 2.2 7.6E-05 34.5 4.5 57 264-322 3-76 (82)
6 1x41_A Transcriptional adaptor 75.1 3.7 0.00013 29.9 4.4 50 264-319 5-55 (60)
7 2elk_A SPCC24B10.08C protein; 74.6 4.1 0.00014 29.6 4.5 47 267-318 9-56 (58)
8 2cqq_A RSGI RUH-037, DNAJ homo 71.1 13 0.00044 28.7 6.7 46 269-320 10-58 (72)
9 2xag_B REST corepressor 1; ami 67.6 7.8 0.00027 39.8 6.2 54 264-323 377-430 (482)
10 2yqk_A Arginine-glutamic acid 66.1 8.5 0.00029 28.6 4.6 48 261-313 3-50 (63)
11 2iw5_B Protein corest, REST co 65.4 9.9 0.00034 35.9 5.9 51 264-320 130-180 (235)
12 2cqr_A RSGI RUH-043, DNAJ homo 61.6 39 0.0013 26.1 7.8 50 266-318 17-67 (73)
13 1ity_A TRF1; helix-turn-helix, 58.4 37 0.0013 25.1 7.0 52 262-317 5-57 (69)
14 2dim_A Cell division cycle 5-l 57.6 33 0.0011 25.3 6.6 51 262-317 4-54 (70)
15 2eqr_A N-COR1, N-COR, nuclear 55.2 13 0.00044 27.3 3.9 48 260-313 5-52 (61)
16 2d9a_A B-MYB, MYB-related prot 51.3 52 0.0018 23.5 6.6 50 263-317 4-53 (60)
17 3sjm_A Telomeric repeat-bindin 47.1 42 0.0014 24.9 5.7 48 263-313 7-54 (64)
18 1wgx_A KIAA1903 protein; MYB D 46.5 27 0.00092 27.3 4.6 46 269-317 10-56 (73)
19 1guu_A C-MYB, MYB proto-oncoge 40.4 70 0.0024 22.1 5.6 46 267-317 3-48 (52)
20 4eef_G F-HB80.4, designed hema 40.2 9.8 0.00034 30.3 1.2 45 269-316 22-67 (74)
21 1w0t_A Telomeric repeat bindin 35.9 1.1E+02 0.0037 21.4 6.1 47 267-316 2-48 (53)
22 2cjj_A Radialis; plant develop 32.4 55 0.0019 26.4 4.5 47 269-318 10-57 (93)
23 1gvd_A MYB proto-oncogene prot 29.3 1.3E+02 0.0044 20.7 5.5 46 267-317 3-48 (52)
24 2crg_A Metastasis associated p 29.1 70 0.0024 24.2 4.4 47 263-314 4-50 (70)
25 2li6_A SWI/SNF chromatin-remod 23.0 17 0.00059 29.8 -0.1 45 272-319 49-97 (116)
26 2aje_A Telomere repeat-binding 22.1 1.5E+02 0.005 24.5 5.4 54 262-321 8-63 (105)
27 1kkx_A Transcription regulator 20.3 31 0.001 28.9 0.9 45 272-319 48-96 (123)
28 2lm1_A Lysine-specific demethy 20.2 43 0.0015 26.7 1.7 45 272-317 44-94 (107)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=3.9e-29 Score=193.74 Aligned_cols=61 Identities=51% Similarity=0.758 Sum_probs=57.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhcccC
Q 017108 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM 323 (377)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~ 323 (377)
+.+|+||+||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999996 799999999999999999999999999999997554
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=89.47 E-value=0.94 Score=35.53 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 017108 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (377)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 317 (377)
...+-.||+|=+++|++||.++|+ .=+.|-+.|+ +=|..+++.|-++|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 344678999999999999999973 2367777765 78999999999887
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.77 E-value=1.4 Score=33.27 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=40.5
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017108 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320 (377)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~ 320 (377)
...+-.||+|=++.|++||.++|- .=+.|-+.| +|=|-.+||.|-++|-..
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 445668999999999999999963 235666654 789999999999988554
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.33 E-value=2.1 Score=32.35 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=39.5
Q ss_pred CCCcccCHHHHHHHHHHHHhhCCCCCCch---HHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017108 265 KPRMRWTPELHECFVEAVNKLDGPEKATP---KAVLKLMNVEGLTIYHVKSHLQKYRLA 320 (377)
Q Consensus 265 KpRlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVkSHLQKYRl~ 320 (377)
..+-.||+|=+++|++||.++| .+...| +.|-+.| +|=|..+|+.|-|+|-..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 3445799999999999999996 332223 3444454 689999999999998654
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=79.48 E-value=2.2 Score=34.47 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=36.6
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHh---hc-C-------------CCCCCHHHHHHhhhhhhhccc
Q 017108 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK---LM-N-------------VEGLTIYHVKSHLQKYRLAKY 322 (377)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~---lM-~-------------v~gLT~~hVkSHLQKYRl~k~ 322 (377)
++..-.|.++|-..|++|++..--.... |-+|. .| | -+-=|+.+|.||||.-|..+.
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 3456689999999999999987311122 22221 11 1 134578889999998776543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=75.13 E-value=3.7 Score=29.94 Aligned_cols=50 Identities=24% Similarity=0.214 Sum_probs=38.8
Q ss_pred CCCCcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017108 264 HKPRMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319 (377)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 319 (377)
...|-.||+|=.+++++||.++| +- =+.|-+.| +|=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34566799999999999999996 32 25666666 67899999998887644
No 7
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=74.59 E-value=4.1 Score=29.65 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=35.6
Q ss_pred CcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCCCHHHHHHhhhhhh
Q 017108 267 RMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318 (377)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 318 (377)
+-.||+|=.+++++||++.| |- =+.|-+.|+. |=|..+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 45699999999999999997 32 2456566542 678888888877764
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=71.06 E-value=13 Score=28.70 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHH---HHhhcCCCCCCHHHHHHhhhhhhhc
Q 017108 269 RWTPELHECFVEAVNKLDGPEKATPKA---VLKLMNVEGLTIYHVKSHLQKYRLA 320 (377)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~~kAtPK~---IL~lM~v~gLT~~hVkSHLQKYRl~ 320 (377)
.||.|=+++|+.|+.++++ -||.+ |-+.| |=|..+|+.|-+++...
T Consensus 10 ~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 6999999999999999953 25654 44555 67999999998776543
No 9
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=67.64 E-value=7.8 Score=39.83 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=43.8
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhcccC
Q 017108 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM 323 (377)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~ 323 (377)
.+..-+||+|=|..|++|+.+.|= .=+.|-+.++- =|..+|++|-++||....+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhCh
Confidence 456789999999999999999962 24677788765 4999999999999885443
No 10
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.07 E-value=8.5 Score=28.64 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=32.2
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHh
Q 017108 261 ATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSH 313 (377)
Q Consensus 261 ~~~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSH 313 (377)
+.+...+-.||+|=|++|.+|+.+.| -+ =..|-+.| |+.=|..+|..+
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHH
Confidence 34455567999999999999999995 22 13333311 566777777544
No 11
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=65.40 E-value=9.9 Score=35.94 Aligned_cols=51 Identities=25% Similarity=0.399 Sum_probs=42.1
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017108 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320 (377)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~ 320 (377)
.+..-+||+|=++.|++|+.+.|- + =..|-++ |++=|..+||.|-.+||..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-D---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-D---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-C---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-C---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 466788999999999999999962 2 3567666 5679999999999999864
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=61.57 E-value=39 Score=26.08 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=38.9
Q ss_pred CCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhc-CCCCCCHHHHHHhhhhhh
Q 017108 266 PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLM-NVEGLTIYHVKSHLQKYR 318 (377)
Q Consensus 266 pRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKYR 318 (377)
.+-.||.+=..+|++||..+|. -+|.+--++- -|+|=|-.+|+.|-+.+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3446999999999999999962 2777655543 368999999999987764
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=58.41 E-value=37 Score=25.08 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=40.5
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 017108 262 TAHKPRMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (377)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 317 (377)
..++.|-.||+|=.++.+++|.++| | .=+.|.+.|+..|=|-.+++-+-..|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~----~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEG----NWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSS----CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC----cHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 3567888999999999999999997 3 23678888865577888888765554
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.59 E-value=33 Score=25.33 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=38.3
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 017108 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (377)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 317 (377)
.....|=.||+|=.++++++|.++|. ..=+.|-+.|+ |=|-.+++-|-..|
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34556678999999999999999961 12366777765 77888888776665
No 15
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.18 E-value=13 Score=27.27 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=35.3
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHh
Q 017108 260 SATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSH 313 (377)
Q Consensus 260 ~~~~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSH 313 (377)
+...++..-.||+|=|+.|++|+.+.| .+ =..|-+. +++=|..+|.-|
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g--k~--w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP--KN--FGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST--TC--HHHHHHH--CTTSCHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC--CC--HHHHHHH--cCCCCHHHHHHH
Confidence 344567778999999999999999996 22 2455544 467888887654
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=51.28 E-value=52 Score=23.47 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=36.5
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 017108 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (377)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 317 (377)
....|-.||+|=.++++++|.++|. . .=+.|-+.| +|=|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ-Q--DWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT-T--CHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456778999999999999999962 1 124555554 577888888776654
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=47.07 E-value=42 Score=24.93 Aligned_cols=48 Identities=21% Similarity=0.175 Sum_probs=35.2
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHh
Q 017108 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSH 313 (377)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSH 313 (377)
..+.|-.||+|=.++.+++|++.|. . .=+.|.+.++..|=|-.+++-+
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHH
Confidence 3455678999999999999999962 1 2357888877778788877653
No 18
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=46.47 E-value=27 Score=27.33 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhhc-CCCCCCHHHHHHhhhhh
Q 017108 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKLM-NVEGLTIYHVKSHLQKY 317 (377)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKY 317 (377)
.||.+=..+|.+|+..++ +.+|-+--++- -|+|=|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 499999999999999993 45787766543 37889999999876654
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=40.41 E-value=70 Score=22.06 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=34.6
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 017108 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (377)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 317 (377)
|-.||+|=.++++++|.++|. ..=+.|-+.| +|=|-.+++.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999963 1235666665 577888888776654
No 20
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=40.24 E-value=9.8 Score=30.27 Aligned_cols=45 Identities=29% Similarity=0.312 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcC-CCCCCHHHHHHhhhh
Q 017108 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKLMN-VEGLTIYHVKSHLQK 316 (377)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQK 316 (377)
.||.+=.+.|..|+... .+-||.+--++-. |+|=|.+.|+.|-|-
T Consensus 22 ~WT~eE~K~FE~ALa~y---p~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 22 PWKFSENIAFEIALSFT---NKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp CCCTTHHHHHHHHTSSS---CSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCHHHHHHHHHHHHHC---CCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 49999999999999998 3557776655433 689999999998663
No 21
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=35.91 E-value=1.1e+02 Score=21.36 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=34.5
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhh
Q 017108 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQK 316 (377)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQK 316 (377)
|-.||+|=.+..+++|..+|. . .=+.|.+.|+..|=|-.+++-+-..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE-G--NWSKILLHYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--CHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 457999999999999999971 1 2366777776556777777765433
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=32.40 E-value=55 Score=26.38 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=35.5
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhhc-CCCCCCHHHHHHhhhhhh
Q 017108 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKLM-NVEGLTIYHVKSHLQKYR 318 (377)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKYR 318 (377)
.||.|=.+.|++|+.++| .+ +|.+--++= -|+|=|-.+|+.|-+++.
T Consensus 10 ~WT~eEd~~L~~al~~~~-~~--~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYD-KD--TPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp SCCHHHHHHHHHHHHHSC-TT--CTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-CC--CCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999995 22 555433322 247999999999988764
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=29.27 E-value=1.3e+02 Score=20.70 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=33.6
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 017108 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (377)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 317 (377)
|-.||+|=.++++++|.++|. . .=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999962 1 124555555 577888888776654
No 24
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.08 E-value=70 Score=24.16 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=32.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCCCHHHHHHhh
Q 017108 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHL 314 (377)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 314 (377)
.++..-.||+|=+..|.+|+...| -+ =..|-+. -|++-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHH-HcCCCCHHHHHHHH
Confidence 456677899999999999999995 22 1333331 15677877776654
No 25
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.00 E-value=17 Score=29.79 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017108 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLTIYHVKSHLQKYRL 319 (377)
Q Consensus 272 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT~~hVkSHLQKYRl 319 (377)
-+|+..|.. |..+||.++.+- +.|.+.||++. -..++.|-.||=+
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 578887765 788999887543 46788999987 5677887776633
No 26
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=22.12 E-value=1.5e+02 Score=24.49 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=40.4
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcC--CCCCCHHHHHHhhhhhhhcc
Q 017108 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMN--VEGLTIYHVKSHLQKYRLAK 321 (377)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~--v~gLT~~hVkSHLQKYRl~k 321 (377)
..++.|-.||+|=-+..+++|+++|. . .=+.|++.+. .+|=|-.++|. |||...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKd---rWrnll 63 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKD---KWKTLV 63 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHH---HHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHH---HHHHHH
Confidence 46888999999999999999999973 1 2257777653 47888888886 455543
No 27
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=20.30 E-value=31 Score=28.91 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017108 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLTIYHVKSHLQKYRL 319 (377)
Q Consensus 272 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT~~hVkSHLQKYRl 319 (377)
-+|++.|.. |..+||.++.+- +.|.+.|+++. -..++.|-.||=+
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 467777765 799999987665 46778899987 6677777666544
No 28
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.25 E-value=43 Score=26.73 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCCC--HHHHHHhhhhh
Q 017108 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLT--IYHVKSHLQKY 317 (377)
Q Consensus 272 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKY 317 (377)
-+|++.|.. |..+||.++.+- +.|.+.||++.-| -..+|.|=.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478888876 678999887653 4677889987532 23456555554
Done!