BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017109
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y QG+ A L AL++ ++ G P VA+ N LA +YR + + A L +A+
Sbjct: 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
I +++ G + + +NL Y + K ++A +RAL+I+ +VLG + D A +
Sbjct: 97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156
Query: 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
+LA + QGK + E + ++ I + D + LA Y+K + AET
Sbjct: 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216
Query: 313 VQRKIL 318
+ ++IL
Sbjct: 217 LYKEIL 222
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 1/162 (0%)
Query: 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSE 269
HNL Y Q + E A ++AL+ + GH + D A + LA V Q K D+
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Query: 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329
L +++ I E+ D L LA Y K + +AE + ++ L I E G +
Sbjct: 90 NLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149
Query: 330 LDTVIAAEGLALTLQSTGSLMEAQELFERCLEA-RKKLMPQD 370
D LAL Q+ G E + ++R LE + KL P D
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%)
Query: 155 EGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLG 214
+G G P +NL Y + ++ A PL +A++ L+++ G + + + L
Sbjct: 17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA 76
Query: 215 QFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274
Y Q K +DA AL I+ + LG + A T+ +LA + +GK ++E L
Sbjct: 77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 136
Query: 275 SIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVI 334
++ I E+ D ++L LA + + E ++ L I ++ G + +
Sbjct: 137 ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196
Query: 335 AAEGLALTLQSTGSLMEAQELFERCL 360
LA G +A+ L++ L
Sbjct: 197 TKNNLASCYLKQGKFKQAETLYKEIL 222
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%)
Query: 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA 310
T+++L QG+ + L +++ LE+ D L LA Y N+ DA
Sbjct: 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA 88
Query: 311 ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370
+ L I E + G + LA+ G EA+ L +R LE R+K++ +D
Sbjct: 89 ANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148
Query: 371 HIQV 374
H V
Sbjct: 149 HPDV 152
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 33/84 (39%)
Query: 291 IRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM 350
+R L L Y R A + ++ L +E + G + D LAL +
Sbjct: 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 351 EAQELFERCLEARKKLMPQDHIQV 374
+A L L R+K + +DH V
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAV 110
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 70/142 (49%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y Q K EA L AL ++ G+ P VA+ NNLA LY + + +AEPL A+
Sbjct: 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+I ++ G + +NL Q K E+ YY RAL+I LG + + A T
Sbjct: 113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172
Query: 253 YHLATVLYLQGKENDSEALFLE 274
+LA+ QGK D+E L+ E
Sbjct: 173 NNLASCYLKQGKYQDAETLYKE 194
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%)
Query: 145 LFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204
L AL++ ++ G P VA+ N LA +YR + + +A L +A+ I +++ G +
Sbjct: 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK 264
+ +NL Y + K ++A +RAL+I+ +VLG + D A + +LA + QGK
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK 142
Query: 265 ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318
+ E + ++ I D + LA Y+K + DAET+ ++IL
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y +GK EAE L AL+ ++ G+ P VA NNLA L + + ++ E Y A+
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERAL-KIKGRVLGHGNIDYADT 251
+I GP+D + +NL YL Q K +DA T Y+ L + + G N D
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214
Query: 252 MYHLATVLYLQGKENDSEAL-----FLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306
H + K DS + ++ ++ DS T LR L Y + +
Sbjct: 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKV-------DSPTVNTTLRSLGALYRRQGK 267
Query: 307 LTDAETVQ 314
L A T++
Sbjct: 268 LEAAHTLE 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 231 ERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTC 290
++AL+ + GH + D A + LA V Q K ++ L +++ I E+ D
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 291 IRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM 350
L LA Y K + +AE + ++ L I E G D LAL Q+ G
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 351 EAQELFERCLEA-RKKLMPQD 370
E + + R LE +L P D
Sbjct: 145 EVEYYYRRALEIYATRLGPDD 165
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%)
Query: 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330
L +++ LE+ D L LA Y N+ +A + L I E + G +
Sbjct: 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374
LA+ G EA+ L +R LE R+K++ + H V
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 69/142 (48%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y Q K EA L AL ++ G+ P VA+ NNLA LY + + +AEPL A+
Sbjct: 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252
+I ++ G + NL Q K E+ YY RAL+I LG + + A T
Sbjct: 113 EIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172
Query: 253 YHLATVLYLQGKENDSEALFLE 274
+LA+ QGK D+E L+ E
Sbjct: 173 NNLASCYLKQGKYQDAETLYKE 194
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%)
Query: 145 LFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204
L AL++ ++ G P VA+ N LA +YR + + +A L +A+ I +++ G +
Sbjct: 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK 264
+ +NL Y + K ++A +RAL+I+ +VLG + D A + +LA + QGK
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGK 142
Query: 265 ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318
+ E + ++ I D + LA Y+K + DAET+ ++IL
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Query: 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192
Y +GK EAE L AL+ ++ G+ P VA +NLA L + + ++ E Y A+
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRAL 154
Query: 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERAL-KIKGRVLGHGNIDYADT 251
+I GP+D + +NL YL Q K +DA T Y+ L + + G N D
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214
Query: 252 MYHLATVLYLQGKENDSEAL-----FLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306
H + K DS + ++ ++ DS T LR L Y + +
Sbjct: 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKV-------DSPTVNTTLRSLGALYRRQGK 267
Query: 307 LTDAETVQ 314
L A T++
Sbjct: 268 LEAAHTLE 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 231 ERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTC 290
++AL+ + GH + D A + LA V Q K ++ L +++ I E+ D
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 291 IRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM 350
L LA Y K + +AE + ++ L I E G D LAL Q+ G
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE 144
Query: 351 EAQELFERCLEA-RKKLMPQD 370
E + + R LE +L P D
Sbjct: 145 EVEYYYRRALEIYATRLGPDD 165
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%)
Query: 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330
L +++ LE+ D L LA Y N+ +A + L I E + G +
Sbjct: 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374
LA+ G EA+ L +R LE R+K++ + H V
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 24/149 (16%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y+ QG EA + + AL E DP A A NL Y + +D+A Y
Sbjct: 8 GNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249
+A+++ D R A++NLG Y Q ++A YY++AL++ R A
Sbjct: 60 KALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--------A 103
Query: 250 DTMYHLATVLYLQGKENDSEALFLESIRI 278
+ Y+L Y QG +++ + +++ +
Sbjct: 104 EAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y+ QG EA + + AL E DP A A NL Y + +D+A Y
Sbjct: 42 GNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239
+A+++ D R A++NLG Y Q ++A YY++AL++ R
Sbjct: 94 KALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
A A NL Y + +D+A Y +A+++ D R A++NLG Y Q +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYD 52
Query: 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
+A YY++AL++ R A+ Y+L Y QG +++ + +++ +
Sbjct: 53 EAIEYYQKALELDPRS--------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y+ QG EA + + AL E DP+ A A NL Y + +D+A Y
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
+A+++ D A++NLG Y Q ++A YY++AL++
Sbjct: 68 KALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 158 GERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216
G DP + A A NL Y + +D+A Y +A+++ D A++NLG
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNA 52
Query: 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276
Y Q ++A YY++AL++ A+ Y+L Y QG +++ + +++
Sbjct: 53 YYKQGDYDEAIEYYQKALELDPNN--------AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Query: 277 RILEENGE 284
+ N E
Sbjct: 105 ELDPNNAE 112
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 158 GERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216
G DP + A A NL Y + +D+A Y +A+++ P + A++NLG
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELY-----PNNAE---AWYNLGNA 52
Query: 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276
Y Q ++A YY++AL++ A+ Y+L Y QG +++ + +++
Sbjct: 53 YYKQGDYDEAIEYYQKALELYPNN--------AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Query: 277 RILEENGE 284
+ N E
Sbjct: 105 ELYPNNAE 112
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK 183
+ + G Y+ QG EA + + AL E P+ A A NL Y + +D+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKAL--------ELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236
A Y +A+++ P + A++NLG Y Q ++A YY++AL++
Sbjct: 62 AIEYYQKALELY-----PNNAE---AWYNLGNAYYKQGDYDEAIEYYQKALEL 106
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224
A A NL Y + +D+A Y +A+++ D R A++NLG Y Q +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYD 54
Query: 225 DACTYYERALKIKGR 239
+A YY++AL++ R
Sbjct: 55 EAIEYYQKALELDPR 69
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y+ QG EA + + AL E DP A A NL Y + +D+A Y
Sbjct: 10 GNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 190 EAIKI 194
+A+++
Sbjct: 62 KALEL 66
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 158 GERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216
G DP + A A NL Y + + KA Y +A+++ D A++NLG
Sbjct: 1 GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALEL--------DPNNASAWYNLGNA 52
Query: 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG 263
Y Q + A YY++AL++ + + A Y Y QG
Sbjct: 53 YYKQGDYQKAIEYYQKALEL--------DPNNAKAWYRRGNAYYKQG 91
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 32/192 (16%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
DP+ A NL + + + FD+A YL A+ S P V NL Y Q
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-----SLSPNH---AVVHGNLACVYYEQ 250
Query: 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280
++ A Y RA++++ + D +LA L +G ++E + ++R+
Sbjct: 251 GLIDLAIDTYRRAIELQPH--------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLA 340
+ + L LA + + +A + RK L + + A LA
Sbjct: 303 THADS--------LNNLANIKREQGNIEEAVRLYRKALEVFP--------EFAAAHSNLA 346
Query: 341 LTLQSTGSLMEA 352
LQ G L EA
Sbjct: 347 SVLQQQGKLQEA 358
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218
E PH A NLA + K + +AE Y A+++ + +NL
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH--------ADSLNNLANIKR 316
Query: 219 VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278
Q +E+A Y +AL++ ++A +LA+VL QGK ++ + E+IRI
Sbjct: 317 EQGNIEEAVRLYRKALEVFP--------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268
A++NLG Y Q ++A YY++AL++ + + A+ Y+L Y QG +++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 269 EALFLESIRILEENGE 284
+ +++ + N E
Sbjct: 63 IEYYQKALELDPNNAE 78
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYL 189
G Y+ QG EA + + AL E DP+ A A NL Y + +D+A Y
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 190 EAIKI 194
+A+++
Sbjct: 68 KALEL 72
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 39/151 (25%)
Query: 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196
G +A + F A++E KE + P++ N A L ++A Y +A+++
Sbjct: 37 GDYEKAAEAFTKAIEENKE---DAIPYI-----NFANLLSSVNELERALAFYDKALEL-- 86
Query: 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256
D A++ G Y+V+ ++A +E+AL+ ++ D Y L
Sbjct: 87 ------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--------AGMENGDLFYMLG 132
Query: 257 TVL-----------YLQG----KENDSEALF 272
TVL YLQ END+EA F
Sbjct: 133 TVLVKLEQPKLALPYLQRAVELNENDTEARF 163
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195
QG + EA +L+ AL E P A+A +NLA + + + +A Y EAI+I
Sbjct: 22 QGNIEEAVRLYRKAL--------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI- 72
Query: 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255
+F A+ N+G + ++ A Y RA++I N +AD +L
Sbjct: 73 SPTFAD-------AYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNL 117
Query: 256 ATV 258
A++
Sbjct: 118 ASI 120
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268
+ +NL Q +E+A Y +AL++ ++A +LA+VL QGK ++
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFP--------EFAAAHSNLASVLQQQGKLQEA 62
Query: 269 EALFLESIRILEENGE-----GDSMTCIRRLRYLAQTYVKANRLTDA 310
+ E+IRI + G+++ ++ ++ Q Y +A ++ A
Sbjct: 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDA 226
AC NL Y + F A + E ++I +E FG A NLG ++ + EDA
Sbjct: 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAER-RANSNLGNSHIFLGQFEDA 282
Query: 227 CTYYERALKI 236
+Y+R L +
Sbjct: 283 AEHYKRTLAL 292
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQ 299
V G+ I++++ + ++ Q K NDSE LE+ ++ ++NG+G + L+++
Sbjct: 57 VDGNHQIEFSEFL----ALMSRQLKSNDSEQELLEAFKVFDKNGDG--LISAAELKHVLT 110
Query: 300 TYVKANRLTDAET 312
+ +LTDAE
Sbjct: 111 SI--GEKLTDAEV 121
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQ 299
V G+ I++++ + ++ Q K NDSE LE+ ++ ++NG+G + L+++
Sbjct: 57 VDGNHQIEFSEFL----ALMSRQLKSNDSEQELLEAFKVFDKNGDG--LISAAELKHVLT 110
Query: 300 TYVKANRLTDAE 311
+ +LTDAE
Sbjct: 111 SI--GEKLTDAE 120
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQ 299
V G+ I++++ + ++ Q K NDSE LE+ ++ ++NG+G + L+++
Sbjct: 58 VDGNHQIEFSEFL----ALMSRQLKSNDSEQELLEAFKVFDKNGDG--LISAAELKHVLT 111
Query: 300 TYVKANRLTDAET 312
+ +LTDAE
Sbjct: 112 SI--GEKLTDAEV 122
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
D A NN +K +++A LEA Q++ PE R+ F NLG L
Sbjct: 114 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS---QDTLYPERSRV---FENLGLVSLQM 167
Query: 221 RKLEDACTYYERALKI 236
+K A Y+E++L++
Sbjct: 168 KKPAQAKEYFEKSLRL 183
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 213 LGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN 266
LG++YL Q ++ Y +AL+++G + A+ LATVLY Q ++
Sbjct: 50 LGEYYLWQNDYSNSLLAYRQALQLRG--------ENAELYAALATVLYYQASQH 95
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220
D A NN +K +++A LEA Q++ PE R+ F NLG L
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS---QDTLYPERSRV---FENLGLVSLQX 154
Query: 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253
+K A Y+E++L++ R ++ AD +Y
Sbjct: 155 KKPAQAKEYFEKSLRL-NRNQPSVALEXADLLY 186
>pdb|2D3E|A Chain A, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|B Chain B, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|C Chain C, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|D Chain D, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
Length = 134
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFG---ERDPHVASACNNLAELYRVKKAFDKAEP 186
++Y L+ ++A +KL A + A+ G E + + + NNL L + + + E
Sbjct: 10 SKNYHLENEVARLKKLLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKED 69
Query: 187 LYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238
Y E IK+L + + R A ++ + LED Y + LK K
Sbjct: 70 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL--YAQKLKYKA 119
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 262 QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312
Q K NDSE LE+ ++ ++NG+G + L+++ + +LTDAE
Sbjct: 76 QLKCNDSEQELLEAFKVFDKNGDG--LISAAELKHVLTSI--GEKLTDAEV 122
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIME-SSKGW 327
EA LE ++ + E + D +T + + Y A++ A + I+ M+ ++KG
Sbjct: 197 EAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGG 256
Query: 328 NSLDTVIAAEGLALTLQSTGSLMEAQELF 356
+L + +AA G + TG ++ E+F
Sbjct: 257 GAL-SAVAATGATIKFIGTGEKIDELEVF 284
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTY 301
G+G ID+ + + +A + KE DSE +E+ ++ + +G G + LR++
Sbjct: 59 GNGTIDFPEFLSLMARKM----KEQDSEEELIEAFKVFDRDGNG--LISAAELRHVMTNL 112
Query: 302 VKANRLTDAE 311
+LTD E
Sbjct: 113 --GEKLTDDE 120
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTY 301
G+G ID+ + + +A + KE DSE +E+ ++ + +G G + LR++
Sbjct: 59 GNGTIDFPEFLSLMARKM----KEQDSEEELIEAFKVFDRDGNG--LISAAELRHVMTNL 112
Query: 302 VKANRLTDAE 311
+LTD E
Sbjct: 113 --GEKLTDDE 120
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIME-SSKGW 327
EA LE ++ + E + D +T + + Y A++ A + I+ M+ ++KG
Sbjct: 197 EAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGG 256
Query: 328 NSLDTVIAAEGLALTLQSTGSLMEAQELF 356
+L + +AA G + TG ++ E+F
Sbjct: 257 GAL-SAVAATGATIKFIGTGEKIDELEVF 284
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 129 SGRDYFLQGKLAEAEKLFLSALQE 152
S +DY LQ K A +KLFLS L++
Sbjct: 707 SQQDYELQSKFAGCDKLFLSLLED 730
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,656,912
Number of Sequences: 62578
Number of extensions: 436611
Number of successful extensions: 1240
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1169
Number of HSP's gapped (non-prelim): 67
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)