Query 017109
Match_columns 377
No_of_seqs 863 out of 2856
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 05:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 100.0 3.6E-31 7.8E-36 228.7 33.2 283 92-375 209-492 (508)
2 KOG1840 Kinesin light chain [C 100.0 7.1E-30 1.5E-34 220.7 32.6 261 113-374 189-449 (508)
3 KOG4626 O-linked N-acetylgluco 100.0 1.8E-27 3.8E-32 202.2 14.3 211 119-361 248-484 (966)
4 KOG4626 O-linked N-acetylgluco 99.9 5.7E-27 1.2E-31 199.2 15.4 207 120-366 317-523 (966)
5 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-20 2.8E-25 174.5 24.8 232 94-365 343-574 (615)
6 TIGR00990 3a0801s09 mitochondr 99.9 3.8E-20 8.2E-25 171.4 23.6 230 96-362 308-537 (615)
7 KOG1130 Predicted G-alpha GTPa 99.9 5.1E-20 1.1E-24 150.1 17.2 267 93-370 66-352 (639)
8 KOG1130 Predicted G-alpha GTPa 99.8 2.2E-19 4.7E-24 146.4 16.4 260 95-367 30-309 (639)
9 PRK11788 tetratricopeptide rep 99.8 9.5E-18 2.1E-22 147.7 27.5 234 92-363 79-312 (389)
10 KOG1126 DNA-binding cell divis 99.8 3.2E-20 7E-25 159.9 11.3 209 117-365 415-623 (638)
11 KOG1126 DNA-binding cell divis 99.8 1E-19 2.2E-24 156.8 12.3 220 114-365 344-589 (638)
12 COG3063 PilF Tfp pilus assembl 99.8 7.1E-18 1.5E-22 127.4 20.3 209 118-364 30-238 (250)
13 TIGR02521 type_IV_pilW type IV 99.8 1.3E-17 2.9E-22 136.0 23.9 207 118-362 26-232 (234)
14 KOG1155 Anaphase-promoting com 99.8 2.8E-18 6E-23 141.9 19.3 237 92-361 272-535 (559)
15 KOG1173 Anaphase-promoting com 99.8 1.1E-18 2.3E-23 147.7 15.7 214 117-363 306-519 (611)
16 PRK11788 tetratricopeptide rep 99.8 5.2E-17 1.1E-21 143.1 24.9 234 92-362 45-278 (389)
17 PRK15174 Vi polysaccharide exp 99.8 4.8E-17 1E-21 150.6 25.4 231 92-361 86-346 (656)
18 KOG1155 Anaphase-promoting com 99.8 1.1E-17 2.5E-22 138.3 17.9 216 124-372 263-504 (559)
19 PRK15174 Vi polysaccharide exp 99.8 6.5E-17 1.4E-21 149.7 24.2 237 93-368 121-387 (656)
20 COG3063 PilF Tfp pilus assembl 99.8 5.9E-17 1.3E-21 122.5 16.8 171 161-361 31-201 (250)
21 PRK12370 invasion protein regu 99.8 1.5E-16 3.3E-21 144.9 22.7 222 96-365 275-505 (553)
22 KOG0547 Translocase of outer m 99.8 7.4E-17 1.6E-21 134.4 18.5 231 95-366 339-570 (606)
23 PRK09782 bacteriophage N4 rece 99.8 1.1E-16 2.3E-21 151.9 22.3 219 96-364 490-708 (987)
24 PRK11189 lipoprotein NlpI; Pro 99.8 2.5E-16 5.4E-21 131.9 21.1 227 96-363 40-266 (296)
25 PRK09782 bacteriophage N4 rece 99.8 3.1E-16 6.6E-21 148.9 23.6 200 125-365 544-743 (987)
26 PRK11447 cellulose synthase su 99.8 1.2E-15 2.6E-20 150.7 28.7 241 92-361 313-665 (1157)
27 TIGR02917 PEP_TPR_lipo putativ 99.7 5.2E-16 1.1E-20 151.6 23.4 194 125-360 705-898 (899)
28 PRK11447 cellulose synthase su 99.7 1.4E-15 3E-20 150.2 26.2 206 128-362 274-524 (1157)
29 TIGR02917 PEP_TPR_lipo putativ 99.7 1.2E-15 2.6E-20 149.0 23.7 202 121-362 463-664 (899)
30 PRK12370 invasion protein regu 99.7 8.7E-16 1.9E-20 140.0 19.2 197 126-361 261-469 (553)
31 TIGR02521 type_IV_pilW type IV 99.7 6.1E-15 1.3E-19 120.3 20.9 172 161-362 27-198 (234)
32 KOG1129 TPR repeat-containing 99.7 1.1E-15 2.5E-20 121.3 15.0 229 95-368 236-464 (478)
33 TIGR03302 OM_YfiO outer membra 99.7 3E-14 6.5E-19 116.1 23.1 182 118-319 28-231 (235)
34 KOG2002 TPR-containing nuclear 99.7 1.1E-14 2.4E-19 131.1 21.7 245 90-365 278-528 (1018)
35 COG2956 Predicted N-acetylgluc 99.7 3.1E-14 6.8E-19 113.0 21.5 230 95-363 48-279 (389)
36 TIGR03302 OM_YfiO outer membra 99.7 3E-14 6.6E-19 116.1 22.2 186 161-361 29-231 (235)
37 KOG1125 TPR repeat-containing 99.7 8.9E-15 1.9E-19 124.8 17.5 231 93-354 296-563 (579)
38 PRK04841 transcriptional regul 99.7 6E-13 1.3E-17 129.9 32.5 264 93-365 463-763 (903)
39 KOG1125 TPR repeat-containing 99.7 1.1E-14 2.4E-19 124.2 17.3 210 127-368 289-533 (579)
40 KOG2002 TPR-containing nuclear 99.6 7.3E-14 1.6E-18 125.9 22.7 214 124-369 271-488 (1018)
41 PF13429 TPR_15: Tetratricopep 99.6 5.9E-15 1.3E-19 123.5 15.1 200 124-363 79-278 (280)
42 KOG0547 Translocase of outer m 99.6 7.9E-15 1.7E-19 122.5 15.0 212 120-365 323-535 (606)
43 KOG1941 Acetylcholine receptor 99.6 2.4E-13 5.2E-18 109.7 21.6 262 92-366 16-279 (518)
44 KOG1941 Acetylcholine receptor 99.6 1.3E-13 2.7E-18 111.3 19.6 263 93-366 54-324 (518)
45 PRK10049 pgaA outer membrane p 99.6 2.9E-13 6.4E-18 128.2 25.4 231 90-361 23-300 (765)
46 PRK10049 pgaA outer membrane p 99.6 2.3E-13 4.9E-18 128.9 24.1 217 119-363 233-457 (765)
47 KOG1173 Anaphase-promoting com 99.6 1.1E-13 2.4E-18 117.8 19.2 196 94-321 324-519 (611)
48 KOG1129 TPR repeat-containing 99.6 1E-14 2.2E-19 116.0 11.8 200 124-361 224-423 (478)
49 COG2956 Predicted N-acetylgluc 99.6 4.5E-13 9.8E-18 106.6 20.9 235 93-365 80-314 (389)
50 PF14938 SNAP: Soluble NSF att 99.6 2.2E-13 4.7E-18 113.4 18.8 195 163-365 33-228 (282)
51 PF14938 SNAP: Soluble NSF att 99.6 8E-13 1.7E-17 110.0 21.9 230 118-358 30-262 (282)
52 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.3E-19 121.9 10.9 229 89-362 15-243 (280)
53 KOG2003 TPR repeat-containing 99.6 1.2E-13 2.7E-18 114.7 16.7 199 123-361 490-688 (840)
54 KOG2076 RNA polymerase III tra 99.6 4.2E-13 9E-18 120.3 21.0 229 94-360 151-510 (895)
55 PRK11189 lipoprotein NlpI; Pro 99.6 9.5E-13 2.1E-17 110.4 22.0 192 92-320 74-265 (296)
56 KOG0624 dsRNA-activated protei 99.6 2.4E-12 5.3E-17 103.3 21.2 217 119-372 34-257 (504)
57 KOG2003 TPR repeat-containing 99.5 3.1E-12 6.8E-17 106.5 21.5 210 92-348 500-709 (840)
58 cd05804 StaR_like StaR_like; a 99.5 2.4E-12 5.2E-17 112.0 21.5 213 119-361 2-214 (355)
59 PRK10747 putative protoheme IX 99.5 6.3E-12 1.4E-16 110.1 23.8 232 92-365 128-393 (398)
60 PRK04841 transcriptional regul 99.5 6.8E-11 1.5E-15 115.6 33.5 264 94-365 421-723 (903)
61 TIGR00540 hemY_coli hemY prote 99.5 3.2E-11 6.9E-16 106.3 24.7 242 92-366 128-403 (409)
62 KOG0548 Molecular co-chaperone 99.5 1.3E-11 2.8E-16 105.0 20.0 216 122-363 223-456 (539)
63 PRK15179 Vi polysaccharide bio 99.4 2.3E-11 4.9E-16 111.8 21.3 168 125-321 51-218 (694)
64 cd05804 StaR_like StaR_like; a 99.4 1.3E-10 2.7E-15 101.2 24.8 236 116-372 107-345 (355)
65 PLN03218 maturation of RBCL 1; 99.4 1.3E-10 2.7E-15 112.0 25.6 229 94-361 554-782 (1060)
66 KOG1174 Anaphase-promoting com 99.4 7.3E-11 1.6E-15 97.3 20.3 211 122-365 231-503 (564)
67 PRK15359 type III secretion sy 99.4 7E-12 1.5E-16 93.0 13.3 110 143-279 13-122 (144)
68 PRK10747 putative protoheme IX 99.4 6.1E-11 1.3E-15 103.9 21.2 229 93-363 95-358 (398)
69 KOG0624 dsRNA-activated protei 99.4 1.2E-10 2.6E-15 93.9 19.7 239 92-363 116-371 (504)
70 PRK15179 Vi polysaccharide bio 99.4 7.8E-11 1.7E-15 108.3 21.0 156 179-363 63-218 (694)
71 PF13424 TPR_12: Tetratricopep 99.4 4.5E-12 9.8E-17 83.6 9.6 78 119-197 1-78 (78)
72 PLN03218 maturation of RBCL 1; 99.4 3.2E-10 6.8E-15 109.3 25.6 168 166-361 580-747 (1060)
73 PF13424 TPR_12: Tetratricopep 99.4 7.3E-12 1.6E-16 82.6 10.3 77 161-238 1-77 (78)
74 PLN02789 farnesyltranstransfer 99.4 2.8E-10 6E-15 95.4 21.4 200 122-361 36-249 (320)
75 PRK15359 type III secretion sy 99.4 1.3E-11 2.9E-16 91.5 11.9 112 126-261 27-138 (144)
76 TIGR00540 hemY_coli hemY prote 99.4 3.6E-10 7.9E-15 99.6 22.9 233 92-361 94-365 (409)
77 PRK14574 hmsH outer membrane p 99.4 1.4E-10 3E-15 108.7 20.5 196 122-358 33-228 (822)
78 PLN02789 farnesyltranstransfer 99.3 5.6E-10 1.2E-14 93.6 21.7 205 95-346 50-268 (320)
79 COG5010 TadD Flp pilus assembl 99.3 9.9E-11 2.1E-15 91.1 14.5 164 120-316 64-227 (257)
80 KOG0548 Molecular co-chaperone 99.3 3E-10 6.5E-15 96.8 18.4 221 93-346 235-473 (539)
81 PRK10370 formate-dependent nit 99.3 1.8E-10 3.9E-15 90.1 16.0 121 136-280 52-175 (198)
82 KOG0550 Molecular chaperone (D 99.3 9E-11 1.9E-15 96.8 14.5 245 94-365 95-353 (486)
83 KOG4162 Predicted calmodulin-b 99.3 1.1E-09 2.3E-14 97.3 21.9 230 102-365 460-786 (799)
84 PLN03081 pentatricopeptide (PP 99.3 1.8E-10 4E-15 108.9 18.7 218 92-357 269-486 (697)
85 PRK10370 formate-dependent nit 99.3 2.7E-10 5.8E-15 89.2 16.2 151 128-321 21-174 (198)
86 PF13525 YfiO: Outer membrane 99.3 4.1E-09 8.9E-14 83.2 22.9 170 122-311 4-198 (203)
87 PRK15363 pathogenicity island 99.3 5.6E-10 1.2E-14 81.2 16.2 102 120-237 32-133 (157)
88 KOG2076 RNA polymerase III tra 99.3 9E-10 2E-14 99.4 20.9 206 123-361 139-344 (895)
89 PF13525 YfiO: Outer membrane 99.3 2.1E-09 4.6E-14 84.8 19.5 175 164-353 4-198 (203)
90 KOG0553 TPR repeat-containing 99.3 1.5E-10 3.3E-15 91.9 12.7 124 119-266 77-200 (304)
91 PRK10866 outer membrane biogen 99.3 1.4E-08 3E-13 82.2 24.3 180 164-358 31-237 (243)
92 PRK10866 outer membrane biogen 99.2 9.3E-09 2E-13 83.1 23.1 174 123-316 32-237 (243)
93 PF12569 NARP1: NMDA receptor- 99.2 4E-09 8.6E-14 93.8 22.4 243 94-369 16-341 (517)
94 PRK14574 hmsH outer membrane p 99.2 4.7E-09 1E-13 98.7 23.7 223 116-363 285-514 (822)
95 KOG0550 Molecular chaperone (D 99.2 7.9E-10 1.7E-14 91.3 16.2 177 120-321 166-351 (486)
96 CHL00033 ycf3 photosystem I as 99.2 4.6E-10 1E-14 86.1 14.3 114 161-287 31-151 (168)
97 KOG3060 Uncharacterized conser 99.2 1.2E-08 2.5E-13 79.2 21.2 171 120-322 49-222 (289)
98 PLN03081 pentatricopeptide (PP 99.2 5.1E-10 1.1E-14 105.9 16.6 166 166-362 392-557 (697)
99 TIGR02552 LcrH_SycD type III s 99.2 9.2E-10 2E-14 81.3 14.4 112 145-280 5-116 (135)
100 PRK14720 transcript cleavage f 99.2 2.6E-09 5.6E-14 99.5 20.2 218 115-362 23-283 (906)
101 KOG1839 Uncharacterized protei 99.2 6.8E-10 1.5E-14 104.4 16.5 210 165-375 932-1141(1236)
102 COG5010 TadD Flp pilus assembl 99.2 1.6E-09 3.4E-14 84.5 15.8 165 161-358 63-227 (257)
103 PF09976 TPR_21: Tetratricopep 99.2 3.2E-09 6.9E-14 79.2 16.8 132 126-276 14-145 (145)
104 PRK15363 pathogenicity island 99.2 7.5E-10 1.6E-14 80.5 12.8 104 161-280 30-134 (157)
105 KOG1156 N-terminal acetyltrans 99.2 3E-09 6.6E-14 92.8 18.7 234 93-365 18-251 (700)
106 CHL00033 ycf3 photosystem I as 99.2 2E-09 4.3E-14 82.6 15.9 123 119-247 31-153 (168)
107 PF09976 TPR_21: Tetratricopep 99.2 6.4E-09 1.4E-13 77.5 17.9 123 177-318 23-145 (145)
108 KOG1585 Protein required for f 99.2 9.2E-08 2E-12 73.8 23.3 227 116-356 24-250 (308)
109 KOG0495 HAT repeat protein [RN 99.1 8.5E-09 1.8E-13 90.2 19.0 223 95-365 563-785 (913)
110 KOG1174 Anaphase-promoting com 99.1 1.5E-08 3.4E-13 83.9 19.4 198 128-363 201-398 (564)
111 TIGR02552 LcrH_SycD type III s 99.1 3.3E-09 7.2E-14 78.3 14.4 103 119-237 13-115 (135)
112 KOG1128 Uncharacterized conser 99.1 1.9E-09 4.1E-14 95.3 14.5 221 120-372 395-626 (777)
113 KOG1127 TPR repeat-containing 99.1 5.2E-09 1.1E-13 95.6 17.4 217 120-367 489-705 (1238)
114 COG3071 HemY Uncharacterized e 99.1 7.1E-08 1.5E-12 79.8 22.3 242 93-365 95-393 (400)
115 KOG1839 Uncharacterized protei 99.1 4E-09 8.8E-14 99.4 17.1 217 121-338 930-1146(1236)
116 PRK02603 photosystem I assembl 99.1 7.2E-09 1.6E-13 79.8 16.0 110 159-281 29-145 (172)
117 KOG2376 Signal recognition par 99.1 2.5E-08 5.5E-13 86.3 19.9 209 126-362 15-253 (652)
118 PRK14720 transcript cleavage f 99.1 2.8E-09 6E-14 99.3 15.3 129 92-238 41-180 (906)
119 KOG0495 HAT repeat protein [RN 99.1 1.1E-08 2.4E-13 89.6 17.8 208 122-361 650-879 (913)
120 PF12569 NARP1: NMDA receptor- 99.1 5.6E-08 1.2E-12 86.6 22.6 215 124-362 5-257 (517)
121 KOG0553 TPR repeat-containing 99.1 6.7E-09 1.5E-13 82.7 14.9 124 161-308 77-200 (304)
122 TIGR02795 tol_pal_ybgF tol-pal 99.1 7.4E-09 1.6E-13 74.6 14.1 104 166-279 3-106 (119)
123 TIGR02795 tol_pal_ybgF tol-pal 99.1 6E-09 1.3E-13 75.1 13.6 104 124-237 3-106 (119)
124 PRK02603 photosystem I assembl 99.1 1.8E-08 3.8E-13 77.6 16.5 111 118-241 30-147 (172)
125 KOG4162 Predicted calmodulin-b 99.1 8.1E-08 1.8E-12 85.8 22.2 250 94-373 406-719 (799)
126 KOG1156 N-terminal acetyltrans 99.0 3.5E-08 7.5E-13 86.4 18.4 203 124-358 8-210 (700)
127 KOG3060 Uncharacterized conser 99.0 2.1E-07 4.6E-12 72.3 20.6 194 137-364 26-222 (289)
128 PLN03088 SGT1, suppressor of 99.0 6.7E-09 1.4E-13 89.3 13.8 111 126-260 5-115 (356)
129 KOG4340 Uncharacterized conser 99.0 4E-08 8.6E-13 78.1 16.7 196 134-375 21-216 (459)
130 PLN03077 Protein ECB2; Provisi 99.0 4.3E-08 9.4E-13 95.2 19.6 222 91-358 398-650 (857)
131 KOG1585 Protein required for f 99.0 1.3E-06 2.8E-11 67.7 23.2 194 159-361 25-218 (308)
132 PLN03077 Protein ECB2; Provisi 99.0 5.1E-08 1.1E-12 94.7 20.0 221 92-361 232-483 (857)
133 KOG1127 TPR repeat-containing 99.0 9.3E-08 2E-12 87.7 19.7 191 137-365 472-662 (1238)
134 PF12895 Apc3: Anaphase-promot 99.0 9.2E-09 2E-13 68.7 9.6 84 177-275 1-84 (84)
135 PF12688 TPR_5: Tetratrico pep 98.9 3.7E-08 8.1E-13 69.4 12.2 102 166-277 2-103 (120)
136 COG4783 Putative Zn-dependent 98.9 4.8E-07 1E-11 77.0 20.6 132 162-317 303-434 (484)
137 COG3071 HemY Uncharacterized e 98.9 4.6E-07 1E-11 75.1 19.9 221 122-365 83-360 (400)
138 PF12895 Apc3: Anaphase-promot 98.9 2.1E-08 4.5E-13 66.9 10.1 84 135-233 1-84 (84)
139 PLN03088 SGT1, suppressor of 98.9 2.9E-08 6.3E-13 85.4 13.2 95 168-278 5-99 (356)
140 COG4783 Putative Zn-dependent 98.9 1.2E-07 2.6E-12 80.6 16.3 152 121-321 304-455 (484)
141 PF13414 TPR_11: TPR repeat; P 98.9 1.3E-08 2.8E-13 65.2 8.4 65 122-194 2-67 (69)
142 PF12688 TPR_5: Tetratrico pep 98.9 1.2E-07 2.5E-12 67.0 13.5 102 124-235 2-103 (120)
143 KOG1128 Uncharacterized conser 98.9 1.7E-08 3.7E-13 89.5 10.9 192 92-329 434-625 (777)
144 KOG2300 Uncharacterized conser 98.8 4.3E-06 9.4E-11 71.2 23.2 247 95-358 288-552 (629)
145 KOG4340 Uncharacterized conser 98.8 3.4E-07 7.5E-12 73.0 15.9 206 118-357 39-265 (459)
146 PRK10803 tol-pal system protei 98.8 1.9E-07 4.1E-12 76.1 14.9 105 123-237 142-247 (263)
147 PF13414 TPR_11: TPR repeat; P 98.8 3.5E-08 7.5E-13 63.2 8.5 64 165-236 3-67 (69)
148 KOG1586 Protein required for f 98.8 2.4E-06 5.1E-11 65.8 19.3 201 137-367 28-229 (288)
149 cd00189 TPR Tetratricopeptide 98.8 5.5E-08 1.2E-12 66.7 10.1 96 125-236 2-97 (100)
150 PRK10803 tol-pal system protei 98.8 3.2E-07 6.9E-12 74.8 15.5 105 166-280 143-248 (263)
151 PF04733 Coatomer_E: Coatomer 98.8 1.2E-08 2.6E-13 84.6 7.4 167 165-373 102-271 (290)
152 KOG2300 Uncharacterized conser 98.8 5.6E-06 1.2E-10 70.6 21.9 224 134-367 286-519 (629)
153 cd00189 TPR Tetratricopeptide 98.8 7E-08 1.5E-12 66.2 9.4 96 167-278 2-97 (100)
154 KOG1070 rRNA processing protei 98.8 1.7E-06 3.7E-11 82.4 20.4 211 118-362 1453-1663(1710)
155 KOG0543 FKBP-type peptidyl-pro 98.8 3.8E-07 8.3E-12 76.1 14.2 143 121-279 206-356 (397)
156 COG4105 ComL DNA uptake lipopr 98.8 8.4E-06 1.8E-10 64.4 20.8 178 164-356 33-227 (254)
157 PF13432 TPR_16: Tetratricopep 98.7 5.4E-08 1.2E-12 61.4 7.2 60 127-194 1-60 (65)
158 KOG2376 Signal recognition par 98.7 2E-05 4.3E-10 69.0 24.3 233 121-362 173-487 (652)
159 KOG1586 Protein required for f 98.7 2.5E-06 5.4E-11 65.7 16.2 158 175-361 24-182 (288)
160 KOG4555 TPR repeat-containing 98.7 5.1E-06 1.1E-10 57.8 15.8 102 123-236 43-144 (175)
161 KOG2047 mRNA splicing factor [ 98.7 5.3E-06 1.2E-10 73.1 19.7 244 94-360 359-613 (835)
162 KOG3785 Uncharacterized conser 98.7 4.5E-06 9.7E-11 68.4 18.0 183 92-320 32-214 (557)
163 PRK10153 DNA-binding transcrip 98.7 1.3E-06 2.7E-11 78.6 16.5 133 123-278 339-482 (517)
164 KOG3785 Uncharacterized conser 98.7 1.6E-06 3.5E-11 70.9 14.9 182 133-361 32-213 (557)
165 COG2909 MalT ATP-dependent tra 98.7 4.6E-05 9.9E-10 70.1 25.6 258 93-359 426-685 (894)
166 COG4105 ComL DNA uptake lipopr 98.7 1.4E-05 3E-10 63.2 19.6 173 123-315 34-228 (254)
167 COG4785 NlpI Lipoprotein NlpI, 98.7 2.3E-06 5E-11 65.1 14.7 103 118-236 60-162 (297)
168 PRK15331 chaperone protein Sic 98.7 5.9E-07 1.3E-11 65.9 11.3 103 118-236 32-134 (165)
169 KOG0543 FKBP-type peptidyl-pro 98.6 1.7E-06 3.6E-11 72.4 14.1 141 165-321 208-356 (397)
170 COG1729 Uncharacterized protei 98.6 1.4E-06 3E-11 69.3 12.4 102 126-237 144-245 (262)
171 COG1729 Uncharacterized protei 98.6 7.4E-07 1.6E-11 70.9 10.6 103 168-280 144-246 (262)
172 PF13432 TPR_16: Tetratricopep 98.6 2.8E-07 6E-12 58.1 6.8 60 211-278 1-60 (65)
173 KOG4555 TPR repeat-containing 98.6 4.7E-06 1E-10 58.0 12.6 101 166-278 44-144 (175)
174 KOG1915 Cell cycle control pro 98.6 5.3E-05 1.2E-09 64.7 21.4 237 94-366 334-589 (677)
175 PRK11906 transcriptional regul 98.6 6.7E-06 1.5E-10 70.6 16.5 163 125-316 257-432 (458)
176 KOG2047 mRNA splicing factor [ 98.5 1.5E-05 3.3E-10 70.4 18.4 228 121-362 246-540 (835)
177 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.3E-06 9.3E-11 71.9 15.0 120 128-274 174-293 (395)
178 PF08631 SPO22: Meiosis protei 98.5 0.00031 6.8E-09 58.6 25.6 254 93-361 4-274 (278)
179 PF13512 TPR_18: Tetratricopep 98.5 6E-06 1.3E-10 59.3 13.0 105 123-237 10-129 (142)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 5.4E-06 1.2E-10 71.4 14.5 120 170-316 174-293 (395)
181 PRK10153 DNA-binding transcrip 98.5 1.1E-05 2.3E-10 72.8 17.0 138 206-362 338-482 (517)
182 COG4235 Cytochrome c biogenesi 98.5 5E-06 1.1E-10 67.1 13.2 104 118-237 151-257 (287)
183 KOG3617 WD40 and TPR repeat-co 98.5 0.00018 3.8E-09 65.8 23.7 200 160-362 853-1109(1416)
184 COG4235 Cytochrome c biogenesi 98.5 1.1E-05 2.4E-10 65.1 14.4 104 161-280 152-258 (287)
185 PF13374 TPR_10: Tetratricopep 98.5 4.6E-07 9.9E-12 51.3 4.9 41 333-373 2-42 (42)
186 COG4700 Uncharacterized protei 98.4 6.5E-05 1.4E-09 56.0 16.8 135 207-363 89-223 (251)
187 PF04733 Coatomer_E: Coatomer 98.4 1.1E-06 2.4E-11 73.0 8.6 159 124-319 103-264 (290)
188 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00014 3.1E-09 59.2 21.5 208 123-364 59-267 (291)
189 PF13512 TPR_18: Tetratricopep 98.4 1E-05 2.2E-10 58.2 12.0 107 164-280 9-130 (142)
190 PRK15331 chaperone protein Sic 98.4 3.7E-06 8E-11 61.8 9.9 101 161-277 33-133 (165)
191 KOG1915 Cell cycle control pro 98.4 0.00014 3.1E-09 62.2 19.9 204 122-364 72-275 (677)
192 KOG3617 WD40 and TPR repeat-co 98.4 3.2E-05 7E-10 70.4 16.9 132 202-363 853-997 (1416)
193 PRK11906 transcriptional regul 98.4 1.7E-05 3.7E-10 68.2 14.6 148 99-274 275-432 (458)
194 PF10345 Cohesin_load: Cohesin 98.4 0.0021 4.6E-08 60.1 30.4 242 118-367 54-335 (608)
195 KOG3081 Vesicle coat complex C 98.4 0.00021 4.5E-09 56.6 19.0 152 166-356 109-264 (299)
196 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 3.1E-06 6.7E-11 72.5 9.7 72 160-236 70-141 (453)
197 COG2909 MalT ATP-dependent tra 98.4 0.00042 9.1E-09 64.1 23.5 232 124-365 416-650 (894)
198 PF13371 TPR_9: Tetratricopept 98.3 6.2E-06 1.3E-10 53.3 8.6 58 129-194 1-58 (73)
199 COG4700 Uncharacterized protei 98.3 6.2E-05 1.3E-09 56.1 13.9 137 123-281 89-225 (251)
200 KOG4234 TPR repeat-containing 98.3 1.8E-05 3.8E-10 59.6 11.0 103 165-278 95-197 (271)
201 KOG4234 TPR repeat-containing 98.3 3.2E-05 6.9E-10 58.3 12.2 105 122-237 94-198 (271)
202 PF14559 TPR_19: Tetratricopep 98.3 4E-06 8.7E-11 53.3 6.5 53 134-194 2-54 (68)
203 KOG1070 rRNA processing protei 98.3 0.0013 2.8E-08 63.8 25.1 236 92-366 1468-1704(1710)
204 PF10300 DUF3808: Protein of u 98.3 0.00022 4.7E-09 63.9 19.6 181 135-338 200-394 (468)
205 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 4.7E-06 1E-10 71.4 8.6 69 118-194 70-141 (453)
206 KOG2796 Uncharacterized conser 98.3 5.6E-05 1.2E-09 59.6 13.6 143 122-281 176-318 (366)
207 KOG2796 Uncharacterized conser 98.2 0.00018 3.9E-09 56.8 16.1 141 164-321 176-316 (366)
208 PF10300 DUF3808: Protein of u 98.2 0.00013 2.8E-09 65.4 17.0 176 177-372 200-386 (468)
209 PF14559 TPR_19: Tetratricopep 98.2 6.4E-06 1.4E-10 52.3 6.2 54 176-237 2-55 (68)
210 COG4785 NlpI Lipoprotein NlpI, 98.2 0.00048 1E-08 52.9 16.6 199 118-351 94-293 (297)
211 KOG1464 COP9 signalosome, subu 98.2 0.00039 8.4E-09 55.3 16.5 219 136-365 40-263 (440)
212 PF13371 TPR_9: Tetratricopept 98.2 1.4E-05 3.1E-10 51.6 7.3 59 171-237 1-59 (73)
213 PF12968 DUF3856: Domain of Un 98.2 0.00083 1.8E-08 46.1 16.0 121 207-327 7-136 (144)
214 PF10345 Cohesin_load: Cohesin 98.2 0.0064 1.4E-07 57.0 27.4 198 162-367 56-259 (608)
215 KOG1464 COP9 signalosome, subu 98.1 0.001 2.3E-08 52.9 18.5 242 96-347 41-286 (440)
216 KOG3616 Selective LIM binding 98.1 0.0013 2.8E-08 59.8 20.8 211 123-361 661-910 (1636)
217 KOG4648 Uncharacterized conser 98.1 2.1E-05 4.7E-10 64.2 9.0 96 126-237 100-195 (536)
218 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00088 1.9E-08 54.4 19.2 193 95-321 72-266 (291)
219 KOG2610 Uncharacterized conser 98.1 0.00021 4.6E-09 58.5 13.6 165 130-318 110-274 (491)
220 PF13374 TPR_10: Tetratricopep 98.0 1.3E-05 2.9E-10 45.1 4.9 41 207-247 2-42 (42)
221 KOG3081 Vesicle coat complex C 98.0 0.00049 1.1E-08 54.6 14.4 156 125-319 110-269 (299)
222 KOG2610 Uncharacterized conser 98.0 0.003 6.4E-08 52.0 19.2 166 171-360 109-274 (491)
223 KOG4648 Uncharacterized conser 98.0 3.5E-05 7.5E-10 63.1 8.4 96 210-321 100-195 (536)
224 PF13281 DUF4071: Domain of un 98.0 0.0017 3.8E-08 55.3 18.8 208 136-363 112-335 (374)
225 COG2976 Uncharacterized protei 98.0 0.0013 2.8E-08 49.8 15.8 139 127-279 35-189 (207)
226 KOG4642 Chaperone-dependent E3 98.0 0.0001 2.3E-09 57.2 9.8 103 123-241 10-112 (284)
227 KOG4642 Chaperone-dependent E3 98.0 6.3E-05 1.4E-09 58.4 8.5 105 165-285 10-114 (284)
228 PF04184 ST7: ST7 protein; In 97.9 0.0022 4.8E-08 55.8 18.2 131 129-275 174-321 (539)
229 COG2976 Uncharacterized protei 97.9 0.0021 4.5E-08 48.7 15.9 100 249-362 89-188 (207)
230 COG5159 RPN6 26S proteasome re 97.9 0.0029 6.2E-08 50.9 17.1 229 127-364 7-237 (421)
231 COG3898 Uncharacterized membra 97.8 0.012 2.7E-07 49.6 20.3 210 129-375 90-299 (531)
232 PF02259 FAT: FAT domain; Int 97.8 0.014 3.1E-07 50.7 22.6 129 205-345 144-304 (352)
233 PF10602 RPN7: 26S proteasome 97.8 0.0018 3.8E-08 49.8 14.1 112 203-321 32-143 (177)
234 PF12968 DUF3856: Domain of Un 97.8 0.0046 1E-07 42.6 15.3 121 248-368 6-135 (144)
235 PF09986 DUF2225: Uncharacteri 97.8 0.00076 1.7E-08 53.3 12.3 100 178-278 90-194 (214)
236 COG3898 Uncharacterized membra 97.8 0.017 3.7E-07 48.8 22.0 228 93-361 131-391 (531)
237 PF03704 BTAD: Bacterial trans 97.8 0.0037 7.9E-08 46.6 15.3 111 124-242 7-131 (146)
238 KOG2471 TPR repeat-containing 97.7 0.0045 9.7E-08 53.6 16.7 264 93-368 251-654 (696)
239 PF10602 RPN7: 26S proteasome 97.7 0.0031 6.8E-08 48.4 14.7 125 228-361 17-141 (177)
240 PF03704 BTAD: Bacterial trans 97.7 0.0032 6.9E-08 46.9 14.3 107 168-282 9-129 (146)
241 PF13281 DUF4071: Domain of un 97.7 0.0062 1.3E-07 52.1 16.9 179 122-320 140-334 (374)
242 PF12862 Apc5: Anaphase-promot 97.7 0.0012 2.7E-08 44.7 10.6 82 217-300 8-90 (94)
243 PF09986 DUF2225: Uncharacteri 97.7 0.0012 2.5E-08 52.3 11.8 101 261-362 89-194 (214)
244 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0016 3.5E-08 53.4 11.6 106 120-237 78-183 (390)
245 PF13428 TPR_14: Tetratricopep 97.6 0.00026 5.6E-09 40.2 4.9 42 124-173 2-43 (44)
246 PF12862 Apc5: Anaphase-promot 97.5 0.0033 7.1E-08 42.6 11.0 82 133-216 8-90 (94)
247 PF13176 TPR_7: Tetratricopept 97.5 0.00034 7.4E-09 37.6 5.0 32 335-366 1-32 (36)
248 KOG0545 Aryl-hydrocarbon recep 97.5 0.0012 2.5E-08 51.8 9.4 110 249-366 178-297 (329)
249 KOG0545 Aryl-hydrocarbon recep 97.5 0.0031 6.7E-08 49.5 11.3 109 121-237 176-294 (329)
250 PF13176 TPR_7: Tetratricopept 97.4 0.00046 1E-08 37.1 4.7 31 293-323 1-31 (36)
251 COG5159 RPN6 26S proteasome re 97.4 0.027 5.9E-07 45.5 16.1 190 169-369 7-201 (421)
252 KOG2471 TPR repeat-containing 97.4 0.0023 5E-08 55.3 10.9 156 131-303 214-381 (696)
253 PF13431 TPR_17: Tetratricopep 97.4 0.00014 3.1E-09 38.4 2.5 34 145-186 1-34 (34)
254 PF13428 TPR_14: Tetratricopep 97.4 0.00046 1E-08 39.1 4.6 42 208-257 2-43 (44)
255 PF00515 TPR_1: Tetratricopept 97.4 0.00068 1.5E-08 35.9 4.9 30 123-152 1-30 (34)
256 PF05843 Suf: Suppressor of fo 97.4 0.0055 1.2E-07 51.2 12.6 136 167-323 3-139 (280)
257 KOG1463 26S proteasome regulat 97.4 0.064 1.4E-06 44.6 18.2 229 127-366 8-242 (411)
258 PF00515 TPR_1: Tetratricopept 97.3 0.00043 9.3E-09 36.7 3.9 32 333-364 1-32 (34)
259 PF04184 ST7: ST7 protein; In 97.3 0.017 3.7E-07 50.5 15.1 130 214-359 175-321 (539)
260 PF02259 FAT: FAT domain; Int 97.3 0.093 2E-06 45.6 21.7 116 246-365 143-290 (352)
261 KOG3616 Selective LIM binding 97.3 0.027 5.8E-07 51.7 16.6 169 127-320 710-911 (1636)
262 KOG2053 Mitochondrial inherita 97.3 0.034 7.3E-07 52.0 17.5 190 134-357 20-214 (932)
263 PF07719 TPR_2: Tetratricopept 97.3 0.0012 2.7E-08 34.8 5.1 30 165-194 1-30 (34)
264 KOG1463 26S proteasome regulat 97.2 0.076 1.6E-06 44.1 17.1 210 137-360 102-314 (411)
265 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0049 1.1E-07 50.7 10.3 107 162-280 78-184 (390)
266 PF07719 TPR_2: Tetratricopept 97.2 0.00066 1.4E-08 35.9 3.9 31 334-364 2-32 (34)
267 KOG3783 Uncharacterized conser 97.2 0.13 2.9E-06 45.6 22.2 223 123-363 267-521 (546)
268 PF13431 TPR_17: Tetratricopep 97.1 0.00037 8.1E-09 36.8 2.1 33 230-270 2-34 (34)
269 PF05843 Suf: Suppressor of fo 97.1 0.0065 1.4E-07 50.8 10.2 136 125-281 3-139 (280)
270 PF13181 TPR_8: Tetratricopept 97.1 0.0017 3.6E-08 34.3 4.5 31 334-364 2-32 (34)
271 PF06552 TOM20_plant: Plant sp 97.1 0.015 3.2E-07 43.8 10.6 91 139-238 7-104 (186)
272 KOG2053 Mitochondrial inherita 97.1 0.22 4.8E-06 46.9 20.0 192 93-317 20-216 (932)
273 PF08631 SPO22: Meiosis protei 97.0 0.17 3.7E-06 42.3 23.9 141 133-278 3-150 (278)
274 PF13181 TPR_8: Tetratricopept 96.9 0.0031 6.7E-08 33.3 4.7 30 208-237 2-31 (34)
275 PF10579 Rapsyn_N: Rapsyn N-te 96.9 0.032 7E-07 35.5 9.5 71 124-199 7-77 (80)
276 PF04910 Tcf25: Transcriptiona 96.9 0.2 4.4E-06 43.4 17.7 154 118-281 35-225 (360)
277 KOG2041 WD40 repeat protein [G 96.9 0.16 3.5E-06 46.5 17.0 183 123-317 692-936 (1189)
278 KOG4322 Anaphase-promoting com 96.8 0.3 6.4E-06 42.2 18.2 195 160-361 268-470 (482)
279 PF10516 SHNi-TPR: SHNi-TPR; 96.8 0.0053 1.2E-07 33.1 4.6 37 334-370 2-38 (38)
280 KOG1550 Extracellular protein 96.7 0.21 4.5E-06 46.3 17.7 180 138-360 227-424 (552)
281 PF04910 Tcf25: Transcriptiona 96.7 0.29 6.3E-06 42.5 17.2 156 203-367 36-227 (360)
282 PF06552 TOM20_plant: Plant sp 96.7 0.04 8.7E-07 41.5 10.3 91 181-280 7-104 (186)
283 KOG4814 Uncharacterized conser 96.7 0.48 1.1E-05 43.1 18.5 107 249-365 354-460 (872)
284 KOG4322 Anaphase-promoting com 96.7 0.21 4.5E-06 43.1 15.4 187 118-311 268-459 (482)
285 COG3118 Thioredoxin domain-con 96.6 0.3 6.5E-06 40.1 15.6 131 124-278 135-265 (304)
286 KOG0985 Vesicle coat protein c 96.6 0.61 1.3E-05 45.0 19.4 171 165-366 1104-1312(1666)
287 PF10579 Rapsyn_N: Rapsyn N-te 96.5 0.1 2.2E-06 33.3 9.6 70 168-242 9-78 (80)
288 PF13174 TPR_6: Tetratricopept 96.3 0.0055 1.2E-07 31.9 3.0 31 334-364 1-31 (33)
289 KOG0376 Serine-threonine phosp 96.3 0.0058 1.3E-07 52.9 4.5 96 126-237 7-102 (476)
290 KOG4814 Uncharacterized conser 96.3 0.9 2E-05 41.5 17.8 107 165-281 354-460 (872)
291 KOG1538 Uncharacterized conser 96.2 0.3 6.6E-06 44.5 14.6 129 129-274 638-772 (1081)
292 PF10516 SHNi-TPR: SHNi-TPR; 96.2 0.021 4.5E-07 30.9 4.7 35 166-200 2-36 (38)
293 KOG1308 Hsp70-interacting prot 96.1 0.0054 1.2E-07 50.7 3.0 93 128-236 119-211 (377)
294 PF11817 Foie-gras_1: Foie gra 96.0 0.68 1.5E-05 37.9 22.0 189 167-359 12-244 (247)
295 PF11817 Foie-gras_1: Foie gra 96.0 0.69 1.5E-05 37.9 23.0 188 125-316 12-243 (247)
296 COG3118 Thioredoxin domain-con 96.0 0.72 1.6E-05 38.0 15.5 161 168-358 137-297 (304)
297 KOG0687 26S proteasome regulat 96.0 0.71 1.5E-05 38.5 14.4 131 225-364 82-212 (393)
298 KOG1914 mRNA cleavage and poly 95.9 1.2 2.5E-05 40.0 18.5 156 181-364 347-503 (656)
299 PF13174 TPR_6: Tetratricopept 95.9 0.0087 1.9E-07 31.2 2.6 29 251-279 2-30 (33)
300 COG5187 RPN7 26S proteasome re 95.9 0.8 1.7E-05 37.5 14.3 136 221-365 89-224 (412)
301 COG0790 FOG: TPR repeat, SEL1 95.9 0.93 2E-05 38.3 20.6 165 94-305 53-236 (292)
302 PF08424 NRDE-2: NRDE-2, neces 95.8 1.1 2.3E-05 38.5 18.4 127 139-278 47-183 (321)
303 PF12739 TRAPPC-Trs85: ER-Golg 95.7 1.5 3.2E-05 39.2 19.9 181 166-365 209-402 (414)
304 PF00244 14-3-3: 14-3-3 protei 95.6 0.96 2.1E-05 36.7 18.5 184 168-366 4-202 (236)
305 PF04781 DUF627: Protein of un 95.5 0.26 5.7E-06 33.9 8.8 101 171-277 2-106 (111)
306 KOG2041 WD40 repeat protein [G 95.4 0.64 1.4E-05 42.9 13.3 107 165-276 692-823 (1189)
307 KOG0687 26S proteasome regulat 95.4 1.4 3E-05 36.9 15.2 133 183-324 82-214 (393)
308 KOG1914 mRNA cleavage and poly 95.4 2 4.3E-05 38.6 16.9 176 165-362 286-464 (656)
309 KOG0985 Vesicle coat protein c 95.3 2 4.4E-05 41.7 16.5 123 208-361 1105-1248(1666)
310 PF09613 HrpB1_HrpK: Bacterial 95.2 0.38 8.3E-06 35.8 9.5 88 205-308 8-95 (160)
311 PF04781 DUF627: Protein of un 95.2 0.58 1.2E-05 32.3 9.6 101 129-235 2-106 (111)
312 KOG0376 Serine-threonine phosp 95.1 0.012 2.7E-07 51.0 2.0 95 169-279 8-102 (476)
313 PF09613 HrpB1_HrpK: Bacterial 95.1 0.49 1.1E-05 35.2 10.0 87 121-223 8-94 (160)
314 KOG2581 26S proteasome regulat 95.1 2 4.4E-05 37.1 15.2 142 216-364 135-278 (493)
315 PF11207 DUF2989: Protein of u 95.0 1.2 2.7E-05 34.5 12.7 64 202-270 136-199 (203)
316 PF08626 TRAPPC9-Trs120: Trans 95.0 5.1 0.00011 41.3 20.9 156 121-280 240-476 (1185)
317 KOG1550 Extracellular protein 95.0 3.1 6.8E-05 38.7 21.1 133 123-278 244-393 (552)
318 COG0790 FOG: TPR repeat, SEL1 94.8 2.1 4.6E-05 36.1 19.7 181 133-361 51-265 (292)
319 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.45 9.8E-06 28.0 7.6 29 166-194 2-30 (53)
320 COG5187 RPN7 26S proteasome re 94.7 2 4.3E-05 35.3 17.8 136 180-324 90-225 (412)
321 PF11207 DUF2989: Protein of u 94.6 1.4 3E-05 34.3 11.6 77 266-354 123-199 (203)
322 KOG1308 Hsp70-interacting prot 94.5 0.024 5.2E-07 47.1 2.2 88 217-320 124-211 (377)
323 smart00028 TPR Tetratricopepti 94.2 0.095 2.1E-06 26.4 3.6 29 208-236 2-30 (34)
324 PF12739 TRAPPC-Trs85: ER-Golg 94.2 3.9 8.5E-05 36.5 20.2 182 124-324 209-403 (414)
325 PF14853 Fis1_TPR_C: Fis1 C-te 94.2 0.4 8.8E-06 28.2 6.2 29 124-152 2-30 (53)
326 smart00028 TPR Tetratricopepti 94.2 0.083 1.8E-06 26.7 3.2 29 166-194 2-30 (34)
327 KOG4014 Uncharacterized conser 94.1 1.9 4.2E-05 32.8 12.7 153 187-371 50-242 (248)
328 KOG3783 Uncharacterized conser 94.0 4.5 9.8E-05 36.4 17.7 185 123-321 303-521 (546)
329 KOG4507 Uncharacterized conser 93.9 0.1 2.2E-06 46.7 4.8 98 125-237 609-706 (886)
330 KOG0686 COP9 signalosome, subu 93.9 1.3 2.9E-05 38.1 11.0 107 246-359 147-255 (466)
331 KOG0686 COP9 signalosome, subu 93.9 1.6 3.4E-05 37.7 11.3 106 163-275 148-255 (466)
332 PRK10941 hypothetical protein; 93.8 1.5 3.2E-05 36.3 11.1 82 118-212 176-257 (269)
333 PF10952 DUF2753: Protein of u 93.8 1.6 3.5E-05 30.7 9.6 75 294-368 4-85 (140)
334 KOG1497 COP9 signalosome, subu 93.8 3.5 7.5E-05 34.5 17.5 112 204-318 100-211 (399)
335 KOG2581 26S proteasome regulat 93.8 4.2 9.1E-05 35.3 22.0 145 131-281 134-279 (493)
336 PF14561 TPR_20: Tetratricopep 93.7 1.4 2.9E-05 29.5 9.1 34 161-194 18-51 (90)
337 PF07079 DUF1347: Protein of u 93.6 4.8 0.0001 35.5 18.4 191 165-366 6-208 (549)
338 PF15015 NYD-SP12_N: Spermatog 93.6 4.3 9.3E-05 35.4 13.4 109 123-239 176-294 (569)
339 PF07721 TPR_4: Tetratricopept 93.5 0.1 2.3E-06 25.4 2.6 24 250-273 2-25 (26)
340 PF07721 TPR_4: Tetratricopept 93.5 0.12 2.6E-06 25.2 2.7 24 208-231 2-25 (26)
341 KOG4507 Uncharacterized conser 93.4 1.7 3.7E-05 39.5 11.2 104 161-278 209-312 (886)
342 TIGR02561 HrpB1_HrpK type III 93.2 1.2 2.6E-05 32.7 8.4 85 207-307 10-94 (153)
343 KOG1258 mRNA processing protei 93.1 6.9 0.00015 35.8 21.8 182 115-321 289-471 (577)
344 KOG2114 Vacuolar assembly/sort 92.8 4.4 9.6E-05 38.6 13.4 49 188-237 350-398 (933)
345 PF04053 Coatomer_WDAD: Coatom 92.8 5.2 0.00011 36.0 13.8 105 131-276 269-374 (443)
346 PF10255 Paf67: RNA polymerase 92.7 2.3 5E-05 37.3 11.0 74 167-240 124-197 (404)
347 TIGR02561 HrpB1_HrpK type III 92.7 1.9 4.1E-05 31.7 8.8 86 122-223 9-94 (153)
348 KOG2561 Adaptor protein NUB1, 92.6 6.8 0.00015 34.4 13.3 151 206-358 162-340 (568)
349 COG3947 Response regulator con 92.6 1.9 4.2E-05 35.5 9.6 72 124-203 280-351 (361)
350 PF08424 NRDE-2: NRDE-2, neces 92.5 6.3 0.00014 33.8 19.4 148 161-321 15-184 (321)
351 PF08626 TRAPPC9-Trs120: Trans 92.4 10 0.00023 39.1 16.9 155 163-321 240-475 (1185)
352 KOG1538 Uncharacterized conser 92.2 9.8 0.00021 35.3 15.9 131 127-277 649-801 (1081)
353 PRK13184 pknD serine/threonine 92.2 1.9 4.1E-05 42.4 10.9 144 213-368 481-626 (932)
354 COG3629 DnrI DNA-binding trans 92.1 2.6 5.7E-05 34.9 10.2 75 122-204 152-226 (280)
355 COG3629 DnrI DNA-binding trans 92.1 6.2 0.00013 32.8 12.5 74 162-243 150-223 (280)
356 KOG1497 COP9 signalosome, subu 92.0 6.5 0.00014 33.0 17.2 111 247-360 101-211 (399)
357 PF15015 NYD-SP12_N: Spermatog 91.9 8.1 0.00017 33.8 14.2 111 208-326 177-297 (569)
358 PRK13184 pknD serine/threonine 91.9 14 0.00031 36.6 19.6 112 129-252 481-592 (932)
359 TIGR03504 FimV_Cterm FimV C-te 91.6 0.72 1.6E-05 25.9 4.5 26 127-152 3-28 (44)
360 COG4649 Uncharacterized protei 91.3 5.2 0.00011 30.4 15.0 128 131-277 66-195 (221)
361 PF00244 14-3-3: 14-3-3 protei 91.1 7.2 0.00016 31.7 20.8 184 126-324 4-202 (236)
362 KOG2908 26S proteasome regulat 91.1 8.6 0.00019 32.6 15.6 99 258-358 84-182 (380)
363 KOG1258 mRNA processing protei 91.0 13 0.00027 34.2 22.4 179 159-363 291-471 (577)
364 KOG2561 Adaptor protein NUB1, 90.9 3.1 6.8E-05 36.3 9.6 117 250-366 164-300 (568)
365 PRK10941 hypothetical protein; 90.6 5.7 0.00012 32.9 10.8 68 205-280 179-246 (269)
366 COG4976 Predicted methyltransf 90.4 0.24 5.2E-06 39.0 2.5 58 300-365 4-61 (287)
367 PF10952 DUF2753: Protein of u 90.2 5 0.00011 28.3 10.7 73 168-240 4-83 (140)
368 smart00101 14_3_3 14-3-3 homol 90.2 9 0.00019 31.2 21.5 183 168-363 4-201 (244)
369 COG3947 Response regulator con 90.1 8.2 0.00018 32.0 10.8 70 293-370 281-350 (361)
370 KOG3824 Huntingtin interacting 90.0 1.1 2.4E-05 37.1 6.0 62 125-194 118-179 (472)
371 KOG0890 Protein kinase of the 89.9 33 0.00072 37.4 17.4 111 118-238 1665-1786(2382)
372 COG4649 Uncharacterized protei 89.9 7.1 0.00015 29.7 13.6 148 130-319 46-195 (221)
373 PF10255 Paf67: RNA polymerase 89.3 0.88 1.9E-05 39.8 5.4 76 250-325 123-198 (404)
374 KOG3364 Membrane protein invol 89.0 6.9 0.00015 28.3 9.3 67 122-194 31-100 (149)
375 PF10373 EST1_DNA_bind: Est1 D 89.0 7.8 0.00017 32.3 10.9 62 184-261 1-62 (278)
376 PF04053 Coatomer_WDAD: Coatom 89.0 2.7 5.8E-05 37.8 8.3 140 174-353 270-409 (443)
377 TIGR03504 FimV_Cterm FimV C-te 88.6 1.1 2.5E-05 25.1 3.7 25 337-361 3-27 (44)
378 KOG3824 Huntingtin interacting 88.2 1.3 2.8E-05 36.7 5.3 64 207-278 116-179 (472)
379 KOG2114 Vacuolar assembly/sort 88.0 26 0.00057 33.8 17.2 39 114-152 359-397 (933)
380 PF09670 Cas_Cas02710: CRISPR- 87.7 19 0.00041 31.8 17.0 66 123-194 131-198 (379)
381 COG3914 Spy Predicted O-linked 87.6 20 0.00044 33.0 12.5 115 112-237 57-172 (620)
382 PF10373 EST1_DNA_bind: Est1 D 87.3 9.6 0.00021 31.8 10.5 62 142-219 1-62 (278)
383 KOG2908 26S proteasome regulat 87.3 17 0.00037 30.9 15.5 95 216-313 84-179 (380)
384 KOG4563 Cell cycle-regulated h 87.2 3.2 6.9E-05 35.3 7.1 67 121-187 39-105 (400)
385 KOG4014 Uncharacterized conser 87.0 12 0.00026 28.8 9.9 131 123-283 68-238 (248)
386 KOG0508 Ankyrin repeat protein 86.5 20 0.00043 32.0 11.5 139 162-303 242-391 (615)
387 PF12854 PPR_1: PPR repeat 86.3 2.2 4.8E-05 22.3 3.9 26 207-232 7-32 (34)
388 KOG2422 Uncharacterized conser 86.2 28 0.0006 32.1 16.3 176 179-364 252-450 (665)
389 COG4976 Predicted methyltransf 85.8 1.8 3.9E-05 34.3 4.7 55 132-194 4-58 (287)
390 COG2178 Predicted RNA-binding 85.7 15 0.00032 28.5 11.0 117 252-374 32-162 (204)
391 PRK14707 hypothetical protein; 85.6 53 0.0011 35.8 15.4 241 129-373 879-1123(2710)
392 PF12854 PPR_1: PPR repeat 85.6 2.5 5.5E-05 22.0 3.9 26 333-358 7-32 (34)
393 PRK14707 hypothetical protein; 84.4 67 0.0014 35.1 15.5 244 128-373 962-1207(2710)
394 PF08311 Mad3_BUB1_I: Mad3/BUB 83.9 14 0.0003 26.6 11.3 86 263-360 40-126 (126)
395 PF05053 Menin: Menin; InterP 83.8 23 0.0005 32.5 11.0 71 290-363 276-348 (618)
396 KOG4563 Cell cycle-regulated h 83.6 3.9 8.5E-05 34.8 6.0 64 207-270 41-104 (400)
397 KOG3364 Membrane protein invol 83.4 8.8 0.00019 27.8 6.8 67 290-362 31-100 (149)
398 KOG3807 Predicted membrane pro 83.0 28 0.00061 29.6 15.5 59 128-196 189-247 (556)
399 PF09670 Cas_Cas02710: CRISPR- 82.4 35 0.00075 30.2 16.8 140 208-365 132-273 (379)
400 PF01535 PPR: PPR repeat; Int 82.2 2.8 6.1E-05 20.7 3.2 27 209-235 2-28 (31)
401 PF08311 Mad3_BUB1_I: Mad3/BUB 82.1 16 0.00035 26.2 10.8 86 137-234 40-126 (126)
402 KOG1310 WD40 repeat protein [G 81.9 12 0.00025 34.0 8.4 99 122-236 373-474 (758)
403 PF04190 DUF410: Protein of un 81.3 30 0.00064 28.7 21.4 97 173-274 18-115 (260)
404 cd02682 MIT_AAA_Arch MIT: doma 80.7 7.2 0.00016 24.9 5.1 36 333-368 6-41 (75)
405 cd02682 MIT_AAA_Arch MIT: doma 80.2 13 0.00028 23.8 6.5 34 207-240 6-39 (75)
406 COG5107 RNA14 Pre-mRNA 3'-end 79.6 46 0.00099 29.8 16.9 207 123-362 302-531 (660)
407 KOG0508 Ankyrin repeat protein 79.0 1.3 2.9E-05 38.9 1.9 73 147-219 319-391 (615)
408 TIGR00756 PPR pentatricopeptid 78.6 5.8 0.00013 20.1 3.8 27 209-235 2-28 (35)
409 cd02679 MIT_spastin MIT: domai 78.6 15 0.00033 23.8 6.4 33 294-326 11-43 (79)
410 PF04190 DUF410: Protein of un 78.6 37 0.0008 28.2 24.1 215 119-348 6-243 (260)
411 PF14561 TPR_20: Tetratricopep 78.5 17 0.00037 24.3 8.7 33 246-278 19-51 (90)
412 PF10858 DUF2659: Protein of u 78.2 27 0.00058 26.3 13.3 104 127-236 97-200 (220)
413 smart00101 14_3_3 14-3-3 homol 77.6 37 0.00081 27.7 24.1 183 126-321 4-201 (244)
414 PF13041 PPR_2: PPR repeat fam 77.6 7.4 0.00016 22.3 4.4 29 208-236 4-32 (50)
415 PF10858 DUF2659: Protein of u 77.5 28 0.00061 26.2 14.3 130 137-278 71-200 (220)
416 KOG0276 Vesicle coat complex C 77.5 17 0.00037 33.6 8.2 26 294-319 669-694 (794)
417 PF09311 Rab5-bind: Rabaptin-l 76.7 6.2 0.00013 30.5 4.8 50 325-374 132-181 (181)
418 PF13041 PPR_2: PPR repeat fam 76.6 12 0.00025 21.4 5.2 30 165-194 3-32 (50)
419 PF07079 DUF1347: Protein of u 76.3 58 0.0013 29.2 23.2 139 201-358 373-520 (549)
420 PF07163 Pex26: Pex26 protein; 76.3 44 0.00095 27.8 12.9 142 165-315 35-182 (309)
421 KOG2758 Translation initiation 75.3 50 0.0011 28.0 14.5 76 118-197 124-199 (432)
422 KOG1310 WD40 repeat protein [G 74.6 39 0.00084 30.9 9.4 84 222-318 389-472 (758)
423 KOG4521 Nuclear pore complex, 74.0 1.1E+02 0.0024 31.3 18.9 185 165-362 920-1132(1480)
424 PF07163 Pex26: Pex26 protein; 72.9 54 0.0012 27.3 13.7 142 122-273 34-182 (309)
425 PF13812 PPR_3: Pentatricopept 72.2 11 0.00024 19.0 4.2 27 209-235 3-29 (34)
426 cd02679 MIT_spastin MIT: domai 72.0 24 0.00052 22.9 6.6 34 209-242 10-43 (79)
427 PHA02537 M terminase endonucle 71.6 47 0.001 26.8 8.6 109 129-239 89-210 (230)
428 cd02681 MIT_calpain7_1 MIT: do 71.2 25 0.00053 22.6 8.1 32 208-239 7-38 (76)
429 PF10938 YfdX: YfdX protein; 71.2 41 0.0009 25.2 8.0 111 210-320 5-146 (155)
430 PF07720 TPR_3: Tetratricopept 71.0 14 0.0003 19.7 4.8 28 334-361 2-31 (36)
431 PRK15180 Vi polysaccharide bio 70.9 14 0.0003 33.1 5.9 123 218-364 300-422 (831)
432 PF10938 YfdX: YfdX protein; 70.8 42 0.00092 25.2 8.0 110 252-361 5-145 (155)
433 KOG2063 Vacuolar assembly/sort 70.7 1.2E+02 0.0025 30.2 13.1 183 167-361 506-712 (877)
434 PF05053 Menin: Menin; InterP 70.1 93 0.002 28.9 13.6 74 163-239 275-350 (618)
435 PRK15180 Vi polysaccharide bio 69.5 18 0.0004 32.3 6.4 95 210-320 326-420 (831)
436 PHA02537 M terminase endonucle 69.0 60 0.0013 26.2 8.8 106 217-324 93-211 (230)
437 COG2912 Uncharacterized conser 68.9 60 0.0013 26.9 8.8 66 121-194 179-244 (269)
438 KOG4521 Nuclear pore complex, 68.9 1.4E+02 0.0031 30.5 16.9 183 125-320 922-1132(1480)
439 COG3914 Spy Predicted O-linked 67.8 1.1E+02 0.0023 28.6 12.9 113 200-323 61-174 (620)
440 KOG2063 Vacuolar assembly/sort 65.6 1.5E+02 0.0033 29.5 12.0 185 124-319 505-712 (877)
441 KOG3024 Uncharacterized conser 65.4 80 0.0017 26.4 13.3 62 212-274 90-152 (312)
442 smart00777 Mad3_BUB1_I Mad3/BU 64.7 50 0.0011 23.7 8.5 79 142-232 45-124 (125)
443 cd02681 MIT_calpain7_1 MIT: do 64.6 35 0.00076 21.9 8.2 33 123-155 6-38 (76)
444 KOG3024 Uncharacterized conser 64.6 83 0.0018 26.3 13.9 62 296-358 90-152 (312)
445 KOG4279 Serine/threonine prote 64.0 19 0.00041 34.3 5.6 160 203-372 197-383 (1226)
446 PF04212 MIT: MIT (microtubule 62.8 35 0.00075 21.3 6.8 34 123-156 5-38 (69)
447 PF08969 USP8_dimer: USP8 dime 61.8 25 0.00054 24.7 5.0 40 333-374 38-77 (115)
448 KOG4279 Serine/threonine prote 61.3 1E+02 0.0022 29.8 9.6 181 118-320 196-395 (1226)
449 KOG0890 Protein kinase of the 60.5 2.8E+02 0.0062 31.1 20.4 133 139-282 1645-1788(2382)
450 KOG1920 IkappaB kinase complex 60.3 2.1E+02 0.0045 29.4 17.7 66 211-277 956-1027(1265)
451 KOG2422 Uncharacterized conser 60.2 1.5E+02 0.0032 27.7 17.3 175 136-321 251-449 (665)
452 PF04212 MIT: MIT (microtubule 60.1 39 0.00085 21.0 7.7 32 208-239 6-37 (69)
453 KOG0276 Vesicle coat complex C 60.0 51 0.0011 30.7 7.4 30 208-237 667-696 (794)
454 COG4455 ImpE Protein of avirul 59.9 87 0.0019 25.2 7.7 56 131-194 9-64 (273)
455 KOG2396 HAT (Half-A-TPR) repea 58.5 1.4E+02 0.0031 27.3 9.7 81 124-217 106-187 (568)
456 PF09311 Rab5-bind: Rabaptin-l 57.7 48 0.001 25.7 6.2 47 285-331 134-180 (181)
457 cd02683 MIT_1 MIT: domain cont 56.4 52 0.0011 21.2 7.8 33 208-240 7-39 (77)
458 KOG2582 COP9 signalosome, subu 56.3 45 0.00098 28.8 6.2 111 164-278 101-212 (422)
459 smart00745 MIT Microtubule Int 54.2 55 0.0012 20.8 9.4 29 296-324 13-41 (77)
460 PF11846 DUF3366: Domain of un 53.8 92 0.002 24.3 7.5 56 303-364 120-175 (193)
461 KOG2582 COP9 signalosome, subu 52.5 58 0.0013 28.2 6.2 109 207-320 102-212 (422)
462 KOG3807 Predicted membrane pro 52.2 1.5E+02 0.0033 25.4 15.4 121 170-306 189-326 (556)
463 PRK09169 hypothetical protein; 51.6 2.9E+02 0.0062 31.0 11.9 51 295-345 751-808 (2316)
464 cd02683 MIT_1 MIT: domain cont 50.7 66 0.0014 20.7 8.0 34 123-156 6-39 (77)
465 COG5600 Transcription-associat 49.4 1E+02 0.0022 27.0 7.2 100 263-366 144-253 (413)
466 COG1747 Uncharacterized N-term 48.9 2.2E+02 0.0048 26.3 21.4 203 129-362 72-288 (711)
467 COG2912 Uncharacterized conser 48.8 1.6E+02 0.0034 24.6 10.0 68 162-237 178-245 (269)
468 smart00386 HAT HAT (Half-A-TPR 48.4 34 0.00073 16.7 3.4 17 221-237 1-17 (33)
469 PRK12798 chemotaxis protein; R 47.6 2.1E+02 0.0045 25.6 24.5 171 128-321 117-287 (421)
470 PRK09169 hypothetical protein; 47.4 4.6E+02 0.01 29.6 13.2 34 339-372 753-786 (2316)
471 COG5191 Uncharacterized conser 47.3 58 0.0013 27.6 5.4 83 123-218 107-190 (435)
472 PF12753 Nro1: Nuclear pore co 47.2 66 0.0014 28.3 5.9 54 183-239 329-387 (404)
473 cd02678 MIT_VPS4 MIT: domain c 46.4 76 0.0016 20.2 7.9 33 124-156 7-39 (75)
474 smart00745 MIT Microtubule Int 45.9 77 0.0017 20.1 8.5 31 210-240 11-41 (77)
475 PF12309 KBP_C: KIF-1 binding 45.7 2.2E+02 0.0047 25.3 16.2 145 137-281 138-341 (371)
476 PF09205 DUF1955: Domain of un 45.6 1.2E+02 0.0026 22.2 6.6 54 259-320 96-149 (161)
477 smart00777 Mad3_BUB1_I Mad3/BU 45.5 1.1E+02 0.0025 22.0 9.2 79 268-358 45-124 (125)
478 smart00671 SEL1 Sel1-like repe 43.2 47 0.001 16.9 4.0 28 124-151 2-33 (36)
479 cd02678 MIT_VPS4 MIT: domain c 42.0 91 0.002 19.8 8.0 31 210-240 9-39 (75)
480 PF09205 DUF1955: Domain of un 41.1 1.4E+02 0.0031 21.9 7.3 34 161-194 116-149 (161)
481 COG5091 SGT1 Suppressor of G2 40.8 96 0.0021 25.6 5.6 61 262-324 52-112 (368)
482 KOG2034 Vacuolar sorting prote 40.5 63 0.0014 31.6 5.2 59 296-365 363-421 (911)
483 PF08969 USP8_dimer: USP8 dime 40.0 67 0.0015 22.6 4.3 36 121-156 36-71 (115)
484 KOG1524 WD40 repeat-containing 39.3 3.2E+02 0.0069 25.4 9.1 100 208-320 574-673 (737)
485 PF04348 LppC: LppC putative l 38.4 10 0.00023 35.2 0.0 107 246-362 21-127 (536)
486 KOG0546 HSP90 co-chaperone CPR 38.3 50 0.0011 28.5 3.8 106 124-237 223-339 (372)
487 COG2178 Predicted RNA-binding 37.3 2E+02 0.0044 22.6 14.1 116 209-330 31-160 (204)
488 PF11846 DUF3366: Domain of un 36.7 2E+02 0.0044 22.4 7.0 56 219-280 120-175 (193)
489 PF04097 Nic96: Nup93/Nic96; 36.3 4E+02 0.0086 25.6 10.1 111 114-232 405-530 (613)
490 PF12753 Nro1: Nuclear pore co 36.3 86 0.0019 27.6 5.0 55 267-324 329-388 (404)
491 KOG0128 RNA-binding protein SA 35.7 4.5E+02 0.0097 26.0 15.9 205 105-318 132-339 (881)
492 PF08238 Sel1: Sel1 repeat; I 35.4 69 0.0015 16.6 4.1 28 166-193 2-36 (39)
493 KOG1920 IkappaB kinase complex 35.4 5.4E+02 0.012 26.8 17.4 62 256-318 959-1026(1265)
494 PF03745 DUF309: Domain of unk 34.8 96 0.0021 19.0 3.8 59 170-230 4-62 (62)
495 COG5091 SGT1 Suppressor of G2 34.0 1.2E+02 0.0027 25.1 5.2 60 136-197 52-111 (368)
496 cd02680 MIT_calpain7_2 MIT: do 33.2 1.3E+02 0.0029 19.3 9.4 21 303-323 18-38 (75)
497 KOG2709 Uncharacterized conser 32.9 3.5E+02 0.0075 24.3 7.9 87 183-281 10-97 (560)
498 COG5600 Transcription-associat 32.9 3.5E+02 0.0075 23.9 9.1 67 169-239 181-252 (413)
499 PF14863 Alkyl_sulf_dimr: Alky 32.6 2.1E+02 0.0044 21.2 6.6 50 124-181 71-120 (141)
500 cd02656 MIT MIT: domain contai 32.4 1.3E+02 0.0029 19.0 8.2 32 126-157 9-40 (75)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=3.6e-31 Score=228.74 Aligned_cols=283 Identities=25% Similarity=0.278 Sum_probs=269.7
Q ss_pred cccCCChhhhhhhhhhhhccc-cccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDG-SVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
...+|++++|..++..+++.. ...+.+++........+|.+|...+++.+|+..|++|+.+.+..+|+++|..+.++.+
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456899999999999999874 4466789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++..++++++|..++++++++.....+++++..+.
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
.+.++|.+|..+|++++|.+++++++.+.++..+..+......+.++|..|.+.+++.+|...|.++..+. +..|+++|
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~ 447 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCC
Confidence 99999999999999999999999999999999887788888899999999999999999999999999999 88999999
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQVC 375 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 375 (377)
++...+.+|+.+|..+|++++|.++.++++...+...|..+|...
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVE 492 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 999999999999999999999999999999999999999888764
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=7.1e-30 Score=220.72 Aligned_cols=261 Identities=27% Similarity=0.380 Sum_probs=251.3
Q ss_pred cccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 017109 113 SVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192 (377)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 192 (377)
...+...|....+...++..|...|+|++|+..++.++++..+..|.+++.....+..+|.+|..++++++|+..|++|+
T Consensus 189 ~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 189 KGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHH
Q 017109 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALF 272 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (377)
.+.+...|++++..+.++.+||.+|...|++++|..++++|+++.++..+..++.....+.+++.++..++++++|..++
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 017109 273 LESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEA 352 (377)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 352 (377)
++++++.....+.+++.+..++.+||.+|..+|++++|.+++++++.+.+...+..++.....+..+|..|.+.+++.+|
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 99999999888888889999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCcc
Q 017109 353 QELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 353 ~~~~~~al~~~~~~~~~~~~~~ 374 (377)
...|.++..+. +..|++||.+
T Consensus 429 ~~l~~~~~~i~-~~~g~~~~~~ 449 (508)
T KOG1840|consen 429 EQLFEEAKDIM-KLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHH-HHhCCCCCch
Confidence 99999999999 8899999986
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.8e-27 Score=202.20 Aligned_cols=211 Identities=22% Similarity=0.300 Sum_probs=111.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|...++|.++|.+|...+.+++|+..|.+|+.+ .|..+.++.++|.+|..+|..+-|+..|++++++
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---- 315 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---- 315 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc----
Confidence 4555677777777777777777777777777765 4444455555555555555555555555555544
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.|....+|+++|..+...|+..+|+.+|.+++.+. +..+.++++||.++.++|++++|..+|.++++.
T Consensus 316 ----~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 316 ----QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred ----CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 23334455555555555555555555555555553 344444555555555555555555555555543
Q ss_pred HHHcCCC--------------------------CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 279 LEENGEG--------------------------DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 279 ~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
.+..... -.|..+.++.++|..|..+|+.+.|+.+|.+++.+ .|..
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~ 455 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTF 455 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHH
Confidence 1110000 02333444444444444444444444444444444 2444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
+++..+||.+|...|+..+|+..|++++.
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 55555555555555555555555555555
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=5.7e-27 Score=199.17 Aligned_cols=207 Identities=23% Similarity=0.294 Sum_probs=155.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
|....++.++|..+...|+..+|..+|.+++.+ .|..++++++||.+|..+|.+++|..+|.++++.
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v----- 383 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV----- 383 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----
Confidence 444455666666666666666666666666655 4555666666666666666666666666666665
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.|..+.+++++|.+|..+|++++|+.+|++++.+. |..+.++.++|..|..+|+.+.|+..|.+++.+
T Consensus 384 ---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~- 451 (966)
T KOG4626|consen 384 ---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI- 451 (966)
T ss_pred ---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-
Confidence 45556777777777777777777777777777774 777778888888888888888888888887775
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
.|..+.++.+||.+|...|+..+|+..|+.++++. |+...++.+++.++.-..++..=-+.+++.
T Consensus 452 -------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk--------PDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 452 -------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK--------PDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred -------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC--------CCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 67888999999999999999999999999999883 555789999999988777777766777777
Q ss_pred HHHHHhh
Q 017109 360 LEARKKL 366 (377)
Q Consensus 360 l~~~~~~ 366 (377)
.++.+..
T Consensus 517 ~sivrdq 523 (966)
T KOG4626|consen 517 VSIVRDQ 523 (966)
T ss_pred HHHHHHH
Confidence 7776654
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.3e-20 Score=174.46 Aligned_cols=232 Identities=20% Similarity=0.159 Sum_probs=181.1
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+++... |.....+..+|.++...|++++|+..++++++. +|....++..+|.
T Consensus 343 ~~g~~~eA~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~ 407 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQ 407 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 4677777777777776542 344567888888888888888888888888876 5666778888999
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
++...|++++|+.+|++++++ .|.....+.++|.++..+|++++|+..+++++... |....++.
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~ 471 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYN 471 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHH
Confidence 999999999999999998887 23335678889999999999999999999988764 56677889
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.+|.++...|++++|+..|++++++.+.... ........+...+.++...|++++|+.++++++.+. |...
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--------p~~~ 542 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--------PECD 542 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------CCcH
Confidence 9999999999999999999999988554321 111222222233334445799999999999999862 3345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.++..+|.++...|++++|+.+|++++++.++
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 67889999999999999999999999988653
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=3.8e-20 Score=171.37 Aligned_cols=230 Identities=17% Similarity=0.197 Sum_probs=188.6
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
+.+++|...+.+++... ...|..+.++..+|.++...|++++|+..+++++++ +|....++..+|.++
T Consensus 308 ~~y~~A~~~~~~al~~~----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~ 375 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMN 375 (615)
T ss_pred hhHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence 56777777777776544 245677788999999999999999999999999987 677888999999999
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
...|++++|+.+++++++. .|++ ..++..+|.++...|++++|+.+|++++++. |....++.++
T Consensus 376 ~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~~~~~~~l 439 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKL-----NSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDFIFSHIQL 439 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccCHHHHHHH
Confidence 9999999999999999987 3333 5789999999999999999999999999884 5667789999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 335 (377)
|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..|++++++...... .+......
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l 510 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPL 510 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHH
Confidence 999999999999999999999863 223456788999999999999999999999988543211 11112222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+...+.++...|++++|..++++++.+
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333334455579999999999999885
No 7
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.85 E-value=5.1e-20 Score=150.07 Aligned_cols=267 Identities=16% Similarity=0.165 Sum_probs=221.7
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...++|++|......-+.....++ +...-+.+-.++|..+...|.|++|+.+..+-+.++++. .|......+++++|
T Consensus 66 fyL~DY~kAl~yH~hDltlar~lg-dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlg 142 (639)
T KOG1130|consen 66 FYLKDYEKALKYHTHDLTLARLLG-DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLG 142 (639)
T ss_pred hhHhhHHHHHhhhhhhHHHHHHhc-chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhh
Confidence 345777777777666555554444 333445667789999999999999999999999999988 56667789999999
Q ss_pred HHHHHhcC--------------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 173 ELYRVKKA--------------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 173 ~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
.+|...|+ ++.|.++|..-+++.++.. +......++.++|..|+-.|+|+.|+...+.
T Consensus 143 nvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~ 220 (639)
T KOG1130|consen 143 NVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKL 220 (639)
T ss_pred hhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHH
Confidence 99999876 4566777777777766652 3455678999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 233 ALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
-+.+.++.+.. ...-.++.++|.++.-.|+++.|+++|++.+.+..+.+ +....+...+.||..|.-..++++|+.
T Consensus 221 RL~ia~efGDr--AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 221 RLEIAQEFGDR--AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred HHHHHHHhhhH--HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99998776433 44567899999999999999999999999999999887 556677788999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 370 (377)
|+.+-+.+.++..+... ...+++.||..+-..|..++|..+.++.+++..++-++.
T Consensus 297 Yh~rHLaIAqeL~DriG--e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 297 YHQRHLAIAQELEDRIG--ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999888755433 388999999999999999999999999999988876543
No 8
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.83 E-value=2.2e-19 Score=146.42 Aligned_cols=260 Identities=19% Similarity=0.199 Sum_probs=212.3
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|++.....++..+++... .+-.....+|.++|..|+..++|.+|+++...=+.+.+.. .+...-+.+.-+||++
T Consensus 30 ~gdcraGv~ff~aA~qvGT---eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGT---EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNT 104 (639)
T ss_pred ccchhhhHHHHHHHHHhcc---hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccch
Confidence 3455445555555554332 1333445678999999999999999999998888777666 4455667888899999
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK--------------------LEDACTYYERAL 234 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al 234 (377)
+...|.|++|+.+..+-+.+.++.. +....+.+++++|.+|...|+ ++.|.++|..-+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988874 456678899999999998765 455677777777
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 235 KIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
++.++.... .....++.+||..|+-.|+|+.|+...+.-+.+.++.+ +....-.++.++|.++.-.|+++.|+++|
T Consensus 183 ~l~~~lgDr--~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 183 ELSEKLGDR--LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHhhhH--HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 776655332 44577899999999999999999999999999999987 55666678999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
+.++.+..+...... .+...+.||..|.-..++++|+.|..+-+.|.+++-
T Consensus 259 K~tl~LAielg~r~v--EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTV--EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred HHHHHHHHHhcchhH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887755433 378889999999999999999999999999988753
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=9.5e-18 Score=147.72 Aligned_cols=234 Identities=18% Similarity=0.179 Sum_probs=184.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|.....+.+.... ........++..+|.+|...|++++|+..|+++++. .+....++..+
T Consensus 79 ~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~l 147 (389)
T PRK11788 79 FRRRGEVDRAIRIHQNLLSRPD---LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQL 147 (389)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHH
Confidence 3456888888887776665321 122234567899999999999999999999999864 45567788999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+.++...|++++|++.++++++.... +........+..+|.++...|++++|+.+++++++.. |....+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~ 216 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRA 216 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHH
Confidence 99999999999999999998875211 1122234567789999999999999999999998874 445668
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..+|.++...|++++|+..++++++. +......++..++.+|...|++++|...++++++.. ++.
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~-- 282 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQ-------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA-- 282 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc--
Confidence 889999999999999999999999875 222334557788999999999999999999988762 221
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.....++.++...|++++|...++++++..
T Consensus 283 --~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 283 --DLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 234789999999999999999999998864
No 10
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.2e-20 Score=159.89 Aligned_cols=209 Identities=21% Similarity=0.188 Sum_probs=187.0
Q ss_pred cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
+.+|...++|..+|.+|-.+++++.|+++|++|+++ +|..+.+|..+|.-+.....+|.|..+|++|+..
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 345556688999999999999999999999999988 8899999999999999999999999999999987
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
++....+|+.+|.+|.++++++.|+-+|++|+++. |........+|.++.+.|+.++|+.++++|+
T Consensus 485 ------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 485 ------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred ------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 45557899999999999999999999999999995 7778889999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
.+-++ .....+..|.++...+++++|+..+++..++. |+...++..+|.+|.+.|+.+.|+..|
T Consensus 551 ~ld~k--------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 551 HLDPK--------NPLCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hcCCC--------CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHccchHHHHhh
Confidence 87322 22346788999999999999999999988875 566889999999999999999999999
Q ss_pred HHHHHHHHh
Q 017109 357 ERCLEARKK 365 (377)
Q Consensus 357 ~~al~~~~~ 365 (377)
.-|.++.++
T Consensus 615 ~~A~~ldpk 623 (638)
T KOG1126|consen 615 SWALDLDPK 623 (638)
T ss_pred HHHhcCCCc
Confidence 999886443
No 11
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1e-19 Score=156.83 Aligned_cols=220 Identities=21% Similarity=0.243 Sum_probs=187.2
Q ss_pred ccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------------hCCCCCHhHHHH
Q 017109 114 VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKE--------------------------GFGERDPHVASA 167 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------~~~~~~~~~~~~ 167 (377)
.+...++.+.-++.++|..|+..++|++|..+|+.+.+...- .+-..++....+
T Consensus 344 klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPes 423 (638)
T KOG1126|consen 344 KLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPES 423 (638)
T ss_pred hhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHH
Confidence 344455566688899999999999999999999987653110 011334667788
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
|..+|++|..+++++.|+++|++|+.+ +|..+.+|..+|.-+....++|.|..+|++|+... +.
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--------~r 487 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD--------PR 487 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--------ch
Confidence 999999999999999999999999998 56668899999999999999999999999999884 77
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
...+|+.+|.+|.++++++.|+-+|++|+++ .|....+...+|.++.+.|+.++|+.++++|+.+-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld------ 553 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD------ 553 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC------
Confidence 7899999999999999999999999999997 33444567889999999999999999999999873
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|......+..|.++...+++++|+..+++..++.++
T Consensus 554 --~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 554 --PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred --CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 334677889999999999999999999998776543
No 12
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=7.1e-18 Score=127.40 Aligned_cols=209 Identities=20% Similarity=0.130 Sum_probs=180.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+....+.+...+|.-|+..|++..|...+++|++. +|....++..++.+|...|+.+.|.+.|++|+++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--- 98 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--- 98 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---
Confidence 44556788999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+|..+.+++|.|..++.+|++++|...|++|+.. |..+....++.|+|.|..+.|+++.|.++++++++
T Consensus 99 -----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 -----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 4555789999999999999999999999999875 44566688999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
+.+.. ......++..+...|++..|..+++...... ...+..+....++-...|+.+.|..+-.
T Consensus 168 ~dp~~--------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 168 LDPQF--------PPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred hCcCC--------ChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 84433 2345678999999999999999998765442 2347778888889999999999988877
Q ss_pred HHHHHHH
Q 017109 358 RCLEARK 364 (377)
Q Consensus 358 ~al~~~~ 364 (377)
+....++
T Consensus 232 qL~r~fP 238 (250)
T COG3063 232 QLQRLFP 238 (250)
T ss_pred HHHHhCC
Confidence 7666543
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=1.3e-17 Score=136.02 Aligned_cols=207 Identities=20% Similarity=0.189 Sum_probs=172.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+.......+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 94 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--- 94 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 33445788999999999999999999999999876 5666788999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.+.+ ...+.++|.++...|++++|+..+++++... ..+.....+..+|.++...|++++|...+.++++
T Consensus 95 --~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 95 --NPNN---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred --CCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2333 4678899999999999999999999998742 1234456788899999999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
..+ + ....+..+|.++...|++++|..++++++... + .....+..++.++...|+.++|..+.+
T Consensus 164 ~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 IDP-----Q---RPESLLELAELYYLRGQYKDARAYLERYQQTY-----N---QTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred hCc-----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 622 2 23457789999999999999999999998862 1 225566688999999999999999887
Q ss_pred HHHHH
Q 017109 358 RCLEA 362 (377)
Q Consensus 358 ~al~~ 362 (377)
.+...
T Consensus 228 ~~~~~ 232 (234)
T TIGR02521 228 QLQKL 232 (234)
T ss_pred HHHhh
Confidence 76553
No 14
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.8e-18 Score=141.88 Aligned_cols=237 Identities=20% Similarity=0.151 Sum_probs=197.1
Q ss_pred cccCCChhhhhhhhhhhhccccc-ccc--------------------------chhhhHHHHHHHHHHHHHcCCHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSV-VSN--------------------------IHTSKWRVFTDSGRDYFLQGKLAEAEK 144 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~-~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 144 (377)
...+.++++|+..+.+.....+- +++ -+....++...+|+.|...++.++|+.
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHH
Confidence 44577888888877776654321 110 011112344557899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH
Q 017109 145 LFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224 (377)
Q Consensus 145 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 224 (377)
+|++|+++ +|....++..+|.-|..+.+...|++.|++|+++ +|..-.+|+.+|+.|..++.+.
T Consensus 352 YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 352 YFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchH
Confidence 99999998 8899999999999999999999999999999998 4445689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 017109 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304 (377)
Q Consensus 225 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (377)
=|+-+|++|.... |.....+..||.+|.+.++.++|+++|.+++.... ....++..+|.+|.+.
T Consensus 416 YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--------te~~~l~~LakLye~l 479 (559)
T KOG1155|consen 416 YALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--------TEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--------cchHHHHHHHHHHHHH
Confidence 9999999999985 77788999999999999999999999999998622 1335688999999999
Q ss_pred CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 305 NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 305 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
++.++|..+|++.++.. ...|...+.+..+...|+.-+.+.+++++|..+..+++.
T Consensus 480 ~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99999999999999976 333455666788888899999999999999998766654
No 15
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-18 Score=147.74 Aligned_cols=214 Identities=20% Similarity=0.270 Sum_probs=190.6
Q ss_pred cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
+..|..+-.|+.+|..|...|++.+|..+|.++-.+ ++..+.+|...|..+...|..++|+..|..|-++..
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 466777888999999999999999999999999987 889999999999999999999999999999999865
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
... .....+|.-|..++++.-|..+|.+|+.++ |..+..+..+|.+.+..+.|.+|..+|+.++
T Consensus 378 G~h--------lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 378 GCH--------LPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred CCc--------chHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 432 245678999999999999999999999997 7777889999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
...+..... .+.+.-.+.+||.++.+++++++|+.++++++... |....++..+|-+|..+|+++.|+.+|
T Consensus 442 ~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 442 EVIKSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHhhhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 777776533 33566678999999999999999999999999885 444889999999999999999999999
Q ss_pred HHHHHHH
Q 017109 357 ERCLEAR 363 (377)
Q Consensus 357 ~~al~~~ 363 (377)
.+++.+.
T Consensus 513 hKaL~l~ 519 (611)
T KOG1173|consen 513 HKALALK 519 (611)
T ss_pred HHHHhcC
Confidence 9999854
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=5.2e-17 Score=143.08 Aligned_cols=234 Identities=16% Similarity=0.153 Sum_probs=186.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..+++++... .........++..+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~L 113 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQEL 113 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHH
Confidence 345688888888888888643 3446788999999999999999999999887631 01112345678999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.+|...|++++|+..++++++. .+....++..++.++...|++++|++.+++++.... .+........
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~ 182 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHF 182 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHH
Confidence 99999999999999999999875 233357889999999999999999999999877531 1111223456
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|++.++++++.. + ..
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p--~~ 247 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADP--------QCVRASILLGDLALAQGDYAAAIEALERVEEQD-----P--EY 247 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCc--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----h--hh
Confidence 77899999999999999999999998622 233467789999999999999999999998752 1 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
...++..++.+|...|++++|...++++++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2466788999999999999999999999885
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=4.8e-17 Score=150.57 Aligned_cols=231 Identities=11% Similarity=-0.001 Sum_probs=150.5
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+.+... |....++..+|.++...|++++|+..+++++++ .|....++..+
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~-------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~l 150 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVN-------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALH 150 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHH
Confidence 345788898888888877543 334567889999999999999999999999987 66777788888
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHH--------------------------HhcCCCchhHHHHHHHHHHHHHHccCHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQ--------------------------ESFGPEDIRIGVAFHNLGQFYLVQRKLED 225 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~--------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 225 (377)
+.++...|++++|+..+++++.... +....+..........++.++...|++++
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 9999999999999888877654310 00000000001122334556666777777
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhh----HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 017109 226 ACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEND----SEALFLESIRILEENGEGDSMTCIRRLRYLAQTY 301 (377)
Q Consensus 226 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 301 (377)
|+..+++++... |....++..+|.++...|++++ |+..+++++++. |....++..+|.++
T Consensus 231 A~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l 294 (656)
T PRK15174 231 AIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHH
Confidence 777777766542 4445666677777777777765 667777776651 22334556667777
Q ss_pred HHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 302 VKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 302 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
...|++++|+..++++++.. |....++..+|.++...|++++|+..+++++.
T Consensus 295 ~~~g~~~eA~~~l~~al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777776666542 22244555556666666666666666655554
No 18
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-17 Score=138.33 Aligned_cols=216 Identities=19% Similarity=0.223 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC------------CC--------------CHhHHHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG------------ER--------------DPHVASACNNLAELYRV 177 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~--------------~~~~~~~~~~la~~~~~ 177 (377)
-+-...|.+...+.++++|+..|+...+.-.-..+ .+ +....++...+|+-|..
T Consensus 263 ~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSl 342 (559)
T KOG1155|consen 263 YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSL 342 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHH
Confidence 45567788899999999999999988753000000 00 11122233456788888
Q ss_pred hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017109 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLAT 257 (377)
Q Consensus 178 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (377)
.++.++|+.+|++|+++ +|....++..+|.-|..+++...|++.|++|+++. |....+++.+|.
T Consensus 343 r~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQ 406 (559)
T ss_pred HHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHHHhhhhH
Confidence 89999999999999998 66678899999999999999999999999999996 778899999999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHH
Q 017109 258 VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAE 337 (377)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 337 (377)
.|..++.+.=|+-+|+++.+. .|.....+..||.||.+.++.++|+.+|.+++..... ...++.
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--------e~~~l~ 470 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT--------EGSALV 470 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------chHHHH
Confidence 999999999999999999986 2334466889999999999999999999999987422 257899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 338 GLALTLQSTGSLMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 338 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
.||.+|.+.++..+|..+|++.++.. ...|...|
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~ 504 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDD 504 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH-Hhhcccch
Confidence 99999999999999999999999966 33343333
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=6.5e-17 Score=149.68 Aligned_cols=237 Identities=16% Similarity=0.086 Sum_probs=173.5
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------------
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAK------------------ 154 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------ 154 (377)
...|++++|...+.+++... |....++..+|.++...|++++|+..+++++....
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~ 193 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRL 193 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCH
Confidence 44677777777777776532 22345566677777777777777776665543210
Q ss_pred --------hhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHH-
Q 017109 155 --------EGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLED- 225 (377)
Q Consensus 155 --------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~- 225 (377)
.....+.+........++.++...|++++|+..+++++.. .+ ....++..+|.++...|++++
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p---~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GL---DGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CC---CCHHHHHHHHHHHHHcCCchhh
Confidence 0000000011122234566777788888888888887775 23 335788899999999999986
Q ss_pred ---HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 017109 226 ---ACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYV 302 (377)
Q Consensus 226 ---A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 302 (377)
|+..+++++... |....++..+|.++...|++++|+..++++++.. ++ ...++..+|.++.
T Consensus 266 ~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~---~~~a~~~La~~l~ 329 (656)
T PRK15174 266 KLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PD---LPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHH
Confidence 899999999874 6677899999999999999999999999999862 22 3345778999999
Q ss_pred HhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 303 KANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
..|++++|+..|++++... |........+|.++...|++++|...|+++++..++..+
T Consensus 330 ~~G~~~eA~~~l~~al~~~--------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREK--------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HCCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 9999999999999988762 333455666789999999999999999999998776543
No 20
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=5.9e-17 Score=122.51 Aligned_cols=171 Identities=19% Similarity=0.152 Sum_probs=152.7
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
......+...||.-|+..|++..|...++++++. +|....++..++.+|...|+.+.|.+.|++|+.+.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--- 99 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--- 99 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---
Confidence 3456788999999999999999999999999998 55567899999999999999999999999999995
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
|....+++|.|..++.+|++++|...|++++.. +..+....++.|+|.|..+.|+++.|.++|++++++
T Consensus 100 -----p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 100 -----PNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred -----CCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 778899999999999999999999999999873 345566778999999999999999999999999998
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
. |........++..+...|++..|..++++...
T Consensus 169 d--------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 169 D--------PQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred C--------cCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 4 44467788899999999999999999887654
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=1.5e-16 Score=144.87 Aligned_cols=222 Identities=13% Similarity=0.057 Sum_probs=171.4
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhhCCCCCHhHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQ---------GKLAEAEKLFLSALQEAKEGFGERDPHVAS 166 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 166 (377)
+++++|...+.++++.. |....++..+|.++... +++++|+..+++++++ +|....
T Consensus 275 ~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~ 339 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQ 339 (553)
T ss_pred HHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHH
Confidence 44556666666666433 33456677777776533 4489999999999987 788889
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
++..+|.++...|++++|+..+++++++ .|++ ..++..+|.++...|++++|+..+++++++. |
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--------P 403 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLL-----SPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD--------P 403 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------C
Confidence 9999999999999999999999999998 3333 5788999999999999999999999999984 4
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 326 (377)
....+...++.++...|++++|+..++++++. ..+.....+..+|.++..+|++++|...+.+....
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------ 470 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------ 470 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc------
Confidence 33444455666777899999999999998765 22333445788999999999999999999876543
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 327 WNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 327 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.+........++..|...|+ +|...+++.++....
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred --cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 23345667778888888884 788878776665443
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=7.4e-17 Score=134.45 Aligned_cols=231 Identities=18% Similarity=0.123 Sum_probs=188.9
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|++..+...+..+|.... .....|..+|..|....+..+....|.+|.++ +|....+|+..|.+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~-------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDP-------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQM 403 (606)
T ss_pred cCCchhhhhhHHHHHhcCc-------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHH
Confidence 4555556666666554433 22344889999999999999999999999988 88889999999999
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
++-.+++++|+.-|++++.+ +|..+..+..++...++++++++++..|+.+...+ |..+.++..
T Consensus 404 ~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~Evy~~ 467 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPEVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCchHHHH
Confidence 99999999999999999998 56667899999999999999999999999999887 778889999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT-YVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.|.++..+++|++|++.|.+++++-+...... ..+..+...|.+ ..-.+++.+|+.++++++++ +|..-
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~--v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce 537 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPREHLII--VNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCE 537 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhcccccccc--ccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHH
Confidence 99999999999999999999999855421110 011112222222 22458999999999999988 45667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.++..||.+..++|+.++|+++|+++..+.+..
T Consensus 538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 538 QAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 899999999999999999999999999887653
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.1e-16 Score=151.89 Aligned_cols=219 Identities=11% Similarity=-0.014 Sum_probs=129.8
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
+...+|...+.+++.... +. .....+|..+...|++++|+..+++++.. .+. ...+..+|.++
T Consensus 490 ~~~~eAi~a~~~Al~~~P----d~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~al 552 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQP----DA----WQHRAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTA 552 (987)
T ss_pred CCcHHHHHHHHHHHHhCC----ch----HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHH
Confidence 455555555555553331 11 12444555556677777777777665432 111 12345666667
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
...|++++|+.+++++++. .++. ...+..++......|++++|+..++++++.. |. ..++.++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l-----~P~~---~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~L 615 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQR-----GLGD---NALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVAR 615 (987)
T ss_pred HHCCCHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHH
Confidence 7777777777777776654 1222 2333344555555577777777777776653 33 4566677
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 335 (377)
|.++...|++++|+..+++++.+ .|....++.++|.++...|++++|+..++++++.. |....+
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--------P~~~~a 679 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--------PDDPAL 679 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHH
Confidence 77777777777777777776665 12223456667777777777777777777776652 333566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
+.++|.++...|++++|+.++++++++.+
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 66777777777777777777777766554
No 24
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=2.5e-16 Score=131.90 Aligned_cols=227 Identities=15% Similarity=0.032 Sum_probs=165.4
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
+..+.+.....+.+.... .+++..+..++.+|.++...|++++|+..|+++++. +|....++..+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~---~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRD---LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHcccc---CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHH
Confidence 334555555556554332 234456788999999999999999999999999987 677889999999999
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
...|++++|+..+++++++ . |....++.++|.++...|++++|+..++++++.. ++++.. .. .
T Consensus 109 ~~~g~~~~A~~~~~~Al~l-----~---P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~---~ 171 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLEL-----D---PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-AL---W 171 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HH---H
Confidence 9999999999999999998 3 3345789999999999999999999999999874 333311 11 1
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 335 (377)
..+....+++++|+..+.++..... ++. + ..+.+....|+..++ ..+..+.+..+... ...+....+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~~----~~~------~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea 238 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKLD----KEQ------W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCET 238 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhCC----ccc------c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHH
Confidence 2334567889999999987664311 111 1 134555567777654 24444432221110 002344789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+..+|.++...|++++|+.+|++++++.
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999864
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=3.1e-16 Score=148.86 Aligned_cols=200 Identities=12% Similarity=0.044 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.+..+|.++...|++++|+.+++++++. .|.....+..++......|++++|+..++++++. .|
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-----~P--- 607 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-----AP--- 607 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CC---
Confidence 4677888999999999999999999876 3444555556666666779999999999999987 33
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
. ...+.++|.++...|++++|+..+++++... |....++.++|.++...|++++|+..+++++++
T Consensus 608 ~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--------Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------ 672 (987)
T PRK09782 608 S-ANAYVARATIYRQRHNVPAAVSDLRAALELE--------PNNSNYQAALGYALWDSGDIAQSREMLERAHKG------ 672 (987)
T ss_pred C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 2 5688999999999999999999999999884 666788999999999999999999999999886
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.|....++.++|.++...|++++|+.+++++++.. |..+.+....|.+.....+++.|.+.+++...+..
T Consensus 673 --~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 22334678899999999999999999999999874 45577888888999888889999888888877544
Q ss_pred h
Q 017109 365 K 365 (377)
Q Consensus 365 ~ 365 (377)
.
T Consensus 743 ~ 743 (987)
T PRK09782 743 D 743 (987)
T ss_pred c
Confidence 3
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=1.2e-15 Score=150.69 Aligned_cols=241 Identities=19% Similarity=0.169 Sum_probs=171.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchh-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHT-------SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV 164 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 164 (377)
....|++++|...+.+++........... ........+|..+...|++++|+..|+++++. +|..
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~ 384 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTD 384 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC
Confidence 34578888888888888765542221110 01123345688899999999999999999987 5666
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH--------------------------------------
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI-------------------------------------- 206 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------------- 206 (377)
..++..+|.++...|++++|+.+|+++++.. |++...
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999762 221110
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-
Q 017109 207 -GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE- 284 (377)
Q Consensus 207 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 284 (377)
...+..+|.++...|++++|+..|+++++.. |....++..+|.++...|++++|+..++++++..+....
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~ 531 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD--------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ 531 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 1223456777888999999999999999884 556678899999999999999999999988764221100
Q ss_pred --------------------------C---------------------------------------CCHHHHHHHHHHHH
Q 017109 285 --------------------------G---------------------------------------DSMTCIRRLRYLAQ 299 (377)
Q Consensus 285 --------------------------~---------------------------------------~~~~~~~~~~~la~ 299 (377)
. ..+.....+..+|.
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~ 611 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence 0 00001123456777
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
++...|++++|+..|+++++.. |....++..++.++...|++++|+..++++++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7788888888888888877652 33356666777777777777777777766554
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.74 E-value=5.2e-16 Score=151.56 Aligned_cols=194 Identities=21% Similarity=0.211 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.+..+|.++...|++++|+..|++++.. .|.. ..+..++.++...|++++|...++++++. .|++
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~~~~- 769 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKR--------APSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT-----HPND- 769 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC-
Confidence 3444444444455555555555444443 1111 33344455555555555555555554443 1121
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
..++..+|.++...|++++|+.+|+++++.. |....++.+++.++...|+ .+|+.+++++++..+
T Consensus 770 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~---- 834 (899)
T TIGR02917 770 --AVLRTALAELYLAQKDYDKAIKHYRTVVKKA--------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP---- 834 (899)
T ss_pred --HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC----
Confidence 3455555566666666666666666555542 3334455555666666665 556666665555411
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
+.+ ..+..+|.++...|++++|+.+++++++.. |....++..++.++...|++++|...+++++
T Consensus 835 -~~~---~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 835 -NIP---AILDTLGWLLVEKGEADRALPLLRKAVNIA--------PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred -CCc---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111 224455666666666666666666666542 1124555566666666666666666666554
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=1.4e-15 Score=150.19 Aligned_cols=206 Identities=18% Similarity=0.189 Sum_probs=165.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh--
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR-- 205 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 205 (377)
.+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+.+++++++.. ++...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~ 340 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRD 340 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchh
Confidence 4588899999999999999999987 67778899999999999999999999999999873 32221
Q ss_pred ---------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 206 ---------IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 206 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
.......+|.++...|++++|+..|++++... |....++..+|.++...|++++|+..|++++
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11234566889999999999999999999984 5556788999999999999999999999999
Q ss_pred HHHHHcCCC----------CCH------------------------HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 017109 277 RILEENGEG----------DSM------------------------TCIRRLRYLAQTYVKANRLTDAETVQRKILHIME 322 (377)
Q Consensus 277 ~~~~~~~~~----------~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 322 (377)
++.+..... ..+ .....+..+|.++...|++++|+..|+++++..
T Consensus 413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~- 491 (1157)
T PRK11447 413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD- 491 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 763221000 000 001123456778888999999999999999873
Q ss_pred hccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 323 SSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 323 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
|....++..+|.+|...|++++|...++++++.
T Consensus 492 -------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 492 -------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 444678899999999999999999999999874
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.72 E-value=1.2e-15 Score=149.03 Aligned_cols=202 Identities=22% Similarity=0.227 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
....++..+|.++...|++++|+..|+++++. .|....++..++.++...|++++|...+++++.. .
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~ 529 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSI--------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-----D 529 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence 34467788888888888888888888888875 4555667788888888888888888888888775 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
|+ ...++..++.++...|++++|...+++++... |.....+..++.++...|++++|+..++++++..
T Consensus 530 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 530 PK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred cC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 22 24567777777777788888877777776552 3334455666677777777777777766665431
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
+.....+..+|.++...|++++|+..|+++++.. |....++..++.++...|++++|...+++++
T Consensus 598 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 598 -------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--------PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1122345666777777777777777777766542 2224556666777777777777777776666
Q ss_pred HH
Q 017109 361 EA 362 (377)
Q Consensus 361 ~~ 362 (377)
+.
T Consensus 663 ~~ 664 (899)
T TIGR02917 663 EL 664 (899)
T ss_pred hc
Confidence 53
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.71 E-value=8.7e-16 Score=139.98 Aligned_cols=197 Identities=17% Similarity=0.100 Sum_probs=157.8
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---------CHhHHHHHHHHHHH
Q 017109 126 FTDSGRDYFLQ---GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---------AFDKAEPLYLEAIK 193 (377)
Q Consensus 126 ~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~ 193 (377)
++..|...... +++++|+..+++++++ +|....++..+|.++...+ ++++|...++++++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455544433 4578999999999987 7778888999998876543 48899999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHH
Q 017109 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
+ .|+ ...++..+|.++...|++++|+..+++++++. |....++..+|.++...|++++|+..++
T Consensus 333 l-----dP~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 333 L-----DHN---NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred c-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7 333 35788999999999999999999999999984 6667889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 017109 274 ESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 274 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 353 (377)
+++++.+ ..+ .....++.++...|++++|+..+++++... .|.....+..+|.++...|++++|.
T Consensus 397 ~Al~l~P-----~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 397 ECLKLDP-----TRA---AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHHhcCC-----CCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999722 222 223345556777899999999999987652 1233567888999999999999999
Q ss_pred HHHHHHHH
Q 017109 354 ELFERCLE 361 (377)
Q Consensus 354 ~~~~~al~ 361 (377)
..+++...
T Consensus 462 ~~~~~~~~ 469 (553)
T PRK12370 462 KLTKEIST 469 (553)
T ss_pred HHHHHhhh
Confidence 99988655
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=6.1e-15 Score=120.27 Aligned_cols=172 Identities=22% Similarity=0.178 Sum_probs=146.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.......+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++..
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--- 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 4456788999999999999999999999999876 23335788899999999999999999999999874
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+....++.++|.++...|++++|+..+++++... ..+.....+..+|.++...|++++|...+.+++..
T Consensus 96 -----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 96 -----PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445688899999999999999999999998742 12233455778999999999999999999999886
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
. +.....+..++.++...|++++|..++++++..
T Consensus 165 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 165 D--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred C--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 223567889999999999999999999999886
No 32
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1.1e-15 Score=121.33 Aligned_cols=229 Identities=13% Similarity=0.061 Sum_probs=187.3
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|-+.+|.......+...+ ..+.+..++.+|....+...|+..+.+.++. .|.....+..++.+
T Consensus 236 Lgm~r~AekqlqssL~q~~--------~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQFP--------HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARI 299 (478)
T ss_pred hcChhhhHHHHHHHhhcCC--------chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHH
Confidence 3444555555555554332 3467788899999999999999999988876 67778888899999
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
+..++++++|.++|+.+++. ++....+...+|..|+..++++-|+.+|++.+.+- ......+.+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--------~~speLf~N 363 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--------AQSPELFCN 363 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc--------CCChHHHhh
Confidence 99999999999999999987 33334566678888889999999999999998884 344678899
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVI 334 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 334 (377)
+|.++...+++|-++..+++++....+ ....+.+|+++|.+....|++..|..+|+-++.. +++..+
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~e 430 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGE 430 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHH
Confidence 999999999999999999999987553 3356678999999999999999999999988854 345589
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 335 AAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 335 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
++.+||.+-.+.|+.++|..++..+-...+.+..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 9999999999999999999999999887666543
No 33
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68 E-value=3e-14 Score=116.14 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=149.3
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..+.....++.+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+..++++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--- 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--- 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Confidence 345567889999999999999999999999998763 345566778999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--------------HHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQ--------RKLEDACTYYERALKIKGRVLGHGNIDYADT--------------MYHL 255 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~l 255 (377)
.|+++....+++.+|.++... |++++|+..+++++... ++++....+ ...+
T Consensus 100 --~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 100 --HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred --CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667889999999876 88999999999998774 222222211 2467
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
|.++...|++.+|+..++++++..+ +.+....++..+|.++...|++++|..+++....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYP-----DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCC-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8899999999999999999998733 3456677899999999999999999998876543
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.1e-14 Score=131.06 Aligned_cols=245 Identities=16% Similarity=0.156 Sum_probs=175.2
Q ss_pred hhcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 90 IESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
...+..|+|..+..+...++.... ..+..++.++++|+.|..+|+|++|..+|.++++. ++....-.+.
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-------~~d~~~l~~~ 346 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTE----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-------DNDNFVLPLV 346 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-------CCCCcccccc
Confidence 334556777777777666665442 44556677777888888888888888887777765 1112355667
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR----KLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+|..|...|+++.|..+|++.++. .|....+...+|.+|...+ ..++|..+..++++..
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------- 410 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------- 410 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--------
Confidence 7777788888888888877777776 2223456666777776664 4456666666666554
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
+....++..++.++....-+ .++.+|..|+.+....... .-...++++|..++..|++.+|...+..++..+....
T Consensus 411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 66678899999988765544 4599999999888877644 3345689999999999999999999999999855333
Q ss_pred CCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 326 GWNS--LDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 326 ~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..+. .......+++|.++...++++.|.+.|+..+...+.
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 2222 122456889999999999999999999998875443
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.1e-14 Score=113.04 Aligned_cols=230 Identities=16% Similarity=0.188 Sum_probs=186.0
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC--HhHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERD--PHVASACNNLA 172 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la 172 (377)
..+.++|...+.+.+. .+|.+.++...+|..|.+.|..+.|+...+..++. ++- .....+...||
T Consensus 48 s~Q~dKAvdlF~e~l~-------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr~lAl~qL~ 114 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ-------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQRLLALQQLG 114 (389)
T ss_pred hcCcchHHHHHHHHHh-------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHHHHHHHHHH
Confidence 4455667777776664 56678899999999999999999999998877764 332 34577889999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.-|+..|-++.|+..|....+. ......+...+..+|....++++|++..++...+-. .+....++..+
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~---q~~~~eIAqfy 183 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG---QTYRVEIAQFY 183 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC---ccchhHHHHHH
Confidence 9999999999999999988764 223346788899999999999999999888776642 23345678889
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..++..+....+.+.|...+.++++. ++....+-..+|.++...|+++.|++.++.+++.. +...
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-------~~yl 248 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-------PEYL 248 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-------hHHH
Confidence 99999999999999999999999985 34455566789999999999999999999988752 2335
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
..+...|..+|...|+.++....+.++.+..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7888899999999999999999999887743
No 36
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=3e-14 Score=116.12 Aligned_cols=186 Identities=15% Similarity=0.036 Sum_probs=149.7
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+.....++.+|..+...|++++|+..+++++.. .|+++....++..+|.++...|++++|+..++++++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence 4567889999999999999999999999999887 45566666789999999999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHc--------CChhhHHHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQ--------GKENDSEALFLESIRILEENGEGDSM---------TCIRRLRYLAQTYVK 303 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~~~~~la~~~~~ 303 (377)
++++....+++.+|.++... |++++|+..+++++...+........ ........+|.++..
T Consensus 101 --p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 101 --PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred --cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566888999999876 78999999999998764332100000 000112467899999
Q ss_pred hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 304 ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 304 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.|++.+|+..++++++.. ++++....++..+|.++...|++++|..+++....
T Consensus 179 ~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 179 RGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred cCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999874 23455688999999999999999999998877654
No 37
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=8.9e-15 Score=124.80 Aligned_cols=231 Identities=15% Similarity=0.088 Sum_probs=183.1
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|+..+|.-.+..++. .+|..+++|..||.+....++-..|+..+++|+++ +|....++..||
T Consensus 296 m~nG~L~~A~LafEAAVk-------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLA 360 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVK-------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALA 360 (579)
T ss_pred HhcCCchHHHHHHHHHHh-------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHH
Confidence 446666666666655553 56788999999999999999999999999999998 899999999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHH-----------hcCC----C--------------------chhHHHHHHHHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQE-----------SFGP----E--------------------DIRIGVAFHNLGQFY 217 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~----~--------------------~~~~~~~~~~la~~~ 217 (377)
..|...|.-.+|..++.+-+..-.+ ..+. . ......+...||.+|
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9999999999999999887654200 0000 0 002246788899999
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
...|+|++|+++|+.|+... |.....|+.||-.+....+..+|+..|++|+++ .|..+++.++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------qP~yVR~RyNl 504 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------QPGYVRVRYNL 504 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------CCCeeeeehhh
Confidence 99999999999999999884 888899999999999999999999999999997 45667789999
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh--HHHHHHHHHHHHHHcCCHHHHHH
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLD--TVIAAEGLALTLQSTGSLMEAQE 354 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~ 354 (377)
|..|..+|.|++|.++|-.|+.+.++..+..... .-.++..|=.++...++.+-+..
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999999999999999999987744332221 12344444455566666664433
No 38
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.65 E-value=6e-13 Score=129.94 Aligned_cols=264 Identities=13% Similarity=0.068 Sum_probs=204.4
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|+++++.....+++..... .+......+...+|.++...|++++|...+++++...... .+......++..+|
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la 538 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPL--TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQS 538 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHH
Confidence 4578999999888888764221 1223345567889999999999999999999999987765 23344566788999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|..++++++.......++..+.....+..+|.++...|++++|...+.+++....... ......++
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~ 615 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCL 615 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHH
Confidence 999999999999999999999988764433343455577889999999999999999999999875332 13345677
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC-------------------------------------CCHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEG-------------------------------------DSMTCIRRLR 295 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------------~~~~~~~~~~ 295 (377)
..++.++...|++++|...+.++..+....... ..........
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 789999999999999999999987764432100 0000111235
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.++.++...|++++|...+++++...+.... ....+.++..+|.++...|+.++|...+.+++++...
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 6888999999999999999999998765433 2355788899999999999999999999999997654
No 39
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.1e-14 Score=124.23 Aligned_cols=210 Identities=18% Similarity=0.156 Sum_probs=181.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI 206 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 206 (377)
+..|..+++.|+..+|.-.|+.++.. +|..+++|..||.+....++-..|+..+++++++ +|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 46799999999999999999999976 8999999999999999999999999999999998 4445
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----------hcCC----C------------------Ch--hHHHH
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGR-----------VLGH----G------------------NI--DYADT 251 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~----~------------------~~--~~~~~ 251 (377)
..++..||..|...|.-.+|..++.+-+....+ ..+. . .+ ..+.+
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 689999999999999999999999987654310 0000 0 11 33567
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
...||.+|...|+|++|+.+|+.|+.. .|.....|+.||-.+....+..+|+..|.+|+++. |.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~ 496 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PG 496 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CC
Confidence 788999999999999999999999985 45566789999999999999999999999999984 66
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.+++.++||..+..+|.|++|.++|-.|+.+.++-.+
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 6999999999999999999999999999999887443
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.64 E-value=7.3e-14 Score=125.92 Aligned_cols=214 Identities=18% Similarity=0.200 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
.++..++..++..|+|..+..+...++... ...+..+..++.+|.+|..+|+|++|..+|.+++.. .+++
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~ 340 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDN 340 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCC
Confidence 678899999999999999999999998764 235677889999999999999999999999999986 2333
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----ChhhHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG----KENDSEALFLESIRIL 279 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~ 279 (377)
....+..+|.+|...|+++.|..+|++.+... |....++..||.+|...+ ..+.|..++.++++..
T Consensus 341 --~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 341 --FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred --ccccccchhHHHHHhchHHHHHHHHHHHHHhC--------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 35678899999999999999999999999886 677788888999998876 5577777777777652
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
+....++..++.++.. ++...++..|..|+.+....... .| ++.+.++|..+...|++++|...+..+
T Consensus 411 --------~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~-ip--~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 411 --------PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ-IP--PEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred --------cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC-CC--HHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 4456678899998876 45556699999999998887666 55 889999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 017109 360 LEARKKLMPQ 369 (377)
Q Consensus 360 l~~~~~~~~~ 369 (377)
+.......+.
T Consensus 479 ~~~~~~~~n~ 488 (1018)
T KOG2002|consen 479 LGKLLEVANK 488 (1018)
T ss_pred hhhhhhhcCc
Confidence 9985544433
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=5.9e-15 Score=123.46 Aligned_cols=200 Identities=20% Similarity=0.182 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..+..++.+ ...+++++|..+++++.+.. .....+..+..++...++++++...++++... +..
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~ 142 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYERD---------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAA 142 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T--
T ss_pred ccccccccc-cccccccccccccccccccc---------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCC
Confidence 445556666 68899999999998887641 12344556677889999999999999997753 112
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
+.....+..+|.++...|++++|+..++++++.. |....+...++.++...|+++++.+.+....+..+..
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~- 213 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELD--------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD- 213 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-
Confidence 3346788999999999999999999999999996 6667788899999999999999888888877664322
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+ ..+..+|.++...|++++|+.++++++.. +|.....+..+|.++...|+.++|..++++++...
T Consensus 214 ----~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 214 ----P---DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp ----C---CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred ----H---HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence 1 23567899999999999999999999876 34557888999999999999999999999988753
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.9e-15 Score=122.53 Aligned_cols=212 Identities=20% Similarity=0.218 Sum_probs=174.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
...+.++...|..++-.|++-.|.+.+..++.+ ++.....|..+|.+|....+..+....|.+|.++
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----- 389 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL----- 389 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-----
Confidence 446888999999999999999999999999987 5666666999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+|.+ ..+|+..|.+++-.+++++|+.-|++++.+. |..+.++..++.+.+++++++++...|+++.+.+
T Consensus 390 dp~n---~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF 458 (606)
T KOG0547|consen 390 DPEN---PDVYYHRGQMRFLLQQYEEAIADFQKAISLD--------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF 458 (606)
T ss_pred CCCC---CchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444 4789999999999999999999999999995 8888999999999999999999999999999875
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALT-LQSTGSLMEAQELFER 358 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 358 (377)
+. ...++...|.++..+++++.|++.|+.++++-....+.... +..+...|.+ ..-.+++..|.+++++
T Consensus 459 P~--------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~--~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 459 PN--------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN--AAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred CC--------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc--chhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 43 34567889999999999999999999999986442211111 1122222222 2234899999999999
Q ss_pred HHHHHHh
Q 017109 359 CLEARKK 365 (377)
Q Consensus 359 al~~~~~ 365 (377)
++++.++
T Consensus 529 A~e~Dpk 535 (606)
T KOG0547|consen 529 AIELDPK 535 (606)
T ss_pred HHccCch
Confidence 9986443
No 43
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.63 E-value=2.4e-13 Score=109.75 Aligned_cols=262 Identities=17% Similarity=0.078 Sum_probs=212.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
.+...+++.+...+.+.+.... +.......+..+..+....|.|++++.+.--.++.+.+. ++......++.++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~----~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLS----DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNL 89 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHH----HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4456677777777777776554 455567788888999999999999998888777777666 5566778999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+..+....++.+++.+....+.+-....+ ..-......+|..+..++.+++++++|++|+.+.....++ .....+
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~--~LElqv 164 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA--MLELQV 164 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc--eeeeeh
Confidence 99999999999999998887765211111 1224566779999999999999999999999998655333 444678
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDS--MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
+..||.++....++++|.-+..++.++....+.++. .....+++.++..+..+|+...|.++.+++.++.-..++ .
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd--r 242 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD--R 242 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC--h
Confidence 899999999999999999999999999888764443 345567889999999999999999999999999876643 4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 330 LDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 330 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
+..+.++..+|++|...|+.+.|..-|+++..+...+
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 6668899999999999999999999999998876653
No 44
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.62 E-value=1.3e-13 Score=111.35 Aligned_cols=263 Identities=17% Similarity=0.136 Sum_probs=211.9
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC-HhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERD-PHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l 171 (377)
...|.|+++.......|....... +......++.++++.+...-++.+++.+-...+.+ .|.+. ..-..+...+
T Consensus 54 s~~g~y~~mL~~a~sqi~~a~~~~-ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l----pgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 54 SEMGRYKEMLKFAVSQIDTARELE-DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL----PGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC----CCCCcccccchhhhhH
Confidence 346888888888877776665444 44556788999999999999999999888877765 11111 1224667779
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC--hhHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN--IDYA 249 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~ 249 (377)
|.++..++.|++++++|++++++..... |......++..+|..+....++++|.-+..+|.++.....-.+- ....
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 9999999999999999999999987653 34444678999999999999999999999999999876542221 2345
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
.+++.++..+..+|+..+|.++.+++.++.-..+ +.+........+|.+|...|+.+.|..-|+++.......++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr-- 282 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR-- 282 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh--
Confidence 6788999999999999999999999999998887 788888999999999999999999999999999988776543
Q ss_pred hhHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHhh
Q 017109 330 LDTVIAAEGLALTLQSTGSLME-----AQELFERCLEARKKL 366 (377)
Q Consensus 330 ~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~~ 366 (377)
...+.++...++++....-..+ |++.-++++++..++
T Consensus 283 mgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 283 MGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 3347788888888876655555 899999999887774
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.62 E-value=2.9e-13 Score=128.18 Aligned_cols=231 Identities=11% Similarity=-0.023 Sum_probs=159.2
Q ss_pred hhcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 90 IESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
..+.-.|+.++|...+.+... ..|..+.++..+|..+...|++++|+..++++++. .|....++.
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~-------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~ 87 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRV-------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQR 87 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 334456777777766665543 12344567888999999999999999999999887 566677778
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.++.++...|++++|+..++++++. .|++ .. +..+|.++...|++++|+..++++++.. |...
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~ 150 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSG-----APDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQ 150 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCH
Confidence 8999999999999999999999887 3333 34 7788999999999999999999998884 5556
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHH----------------------------------------------HHHHHHHcC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLE----------------------------------------------SIRILEENG 283 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~----------------------------------------------al~~~~~~~ 283 (377)
.++..++.++...|..++|+..+++ +++..+..
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~- 229 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN- 229 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC-
Confidence 6666778777777777766655542 11111111
Q ss_pred CCCCHHHHHHHHH-HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRY-LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 284 ~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
+...+....+... ++ .+...|++++|+..|+++++.. +..|.. +...++.+|...|++++|+..|+++++
T Consensus 230 p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~-----~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 230 PDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEG-----QIIPPW--AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred CccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccC-----CCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 0111222222222 33 3356788888888888876541 122322 333357888888888888888888775
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.61 E-value=2.3e-13 Score=128.93 Aligned_cols=217 Identities=12% Similarity=-0.044 Sum_probs=163.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.+....+.......+...|++++|+..|+++++.. +..|..+.. .+|.+|...|++++|+.+|++++..
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~-----~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~---- 301 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEG-----QIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYH---- 301 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC-----CCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhc----
Confidence 34444454443334467799999999999988651 112444333 3688999999999999999998864
Q ss_pred cCCCc-hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh-------cCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 199 FGPED-IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV-------LGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 199 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
.+.. .........++.++...|++++|+..++++....... ....++....++..++.++...|++++|+.
T Consensus 302 -~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 302 -PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred -CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222 1113456777888899999999999999988763110 000011235677889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHH
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM 350 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 350 (377)
.+++++... |....++..+|.++...|++++|+..+++++.+. |+....+..+|.++...|+++
T Consensus 381 ~l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--------Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 381 RARELAYNA--------PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--------PRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhCCHH
Confidence 999998862 2224578899999999999999999999999873 555678899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017109 351 EAQELFERCLEAR 363 (377)
Q Consensus 351 ~A~~~~~~al~~~ 363 (377)
+|...++++++..
T Consensus 445 ~A~~~~~~ll~~~ 457 (765)
T PRK10049 445 QMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999853
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.1e-13 Score=117.82 Aligned_cols=196 Identities=16% Similarity=0.191 Sum_probs=164.4
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|.+.+.++-... +..+.+|...|..+...|..++|+..|..|-++. +....-...+|.
T Consensus 324 ~i~k~seARry~SKat~lD-------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--------~G~hlP~LYlgm 388 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--------PGCHLPSLYLGM 388 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--------cCCcchHHHHHH
Confidence 4688888888887765443 3455789999999999999999999999999884 333344567899
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
-|...+++.-|..+|.+|+.+ .|.+| .++..+|.+.+..+.|.+|..+|+.++...+..... .+.....+.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai-----~P~Dp---lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~ 459 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAI-----APSDP---LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLN 459 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhc-----CCCcc---hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHH
Confidence 999999999999999999998 44554 688999999999999999999999999776655443 234566789
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+||.++.+.+++++|+.++++++.+. +....++..+|.+|..+|+++.|+++|.+++.+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999999999999999999873 3344668899999999999999999999999874
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1e-14 Score=116.04 Aligned_cols=200 Identities=14% Similarity=0.074 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
-...++|.+|...|-+.+|.+.++.+++. ....+.+..|+.+|....++..|+..+.+.++. .
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q---------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------f 286 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------F 286 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc---------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------C
Confidence 34467999999999999999999999975 345678889999999999999999999999886 3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
|........++.++..++++++|.++|+.+++.. +....+...+|.-|+..++++-|+.+|++.+++-
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG---- 354 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH--------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG---- 354 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--------CccceeeeeeeeccccCCChHHHHHHHHHHHHhc----
Confidence 4446678899999999999999999999999873 6667777888999999999999999999999972
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
..+ ...+.++|.|++..++++-++..+++++...... ...+++|+++|.+....|++..|..+|+-++.
T Consensus 355 -~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~-----~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 355 -AQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP-----GQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred -CCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc-----chhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 223 3457899999999999999999999999886432 23488999999999999999999999998886
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=4.5e-13 Score=106.56 Aligned_cols=235 Identities=17% Similarity=0.210 Sum_probs=187.5
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
.+.|+.+.|......-+... .+ .......++..+|.-|+..|-++.|+..|....+. ......++..|-
T Consensus 80 RsRGEvDRAIRiHQ~L~~sp-dl--T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl 148 (389)
T COG2956 80 RSRGEVDRAIRIHQTLLESP-DL--TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLL 148 (389)
T ss_pred HhcchHHHHHHHHHHHhcCC-CC--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHH
Confidence 34577666666655433222 12 23346788999999999999999999999988754 345567889999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.+|....++++|++..++..++-.+ +....++..|..++..+....+.+.|...+.+|++.. +....+-
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--------~~cvRAs 217 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--------KKCVRAS 217 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--------ccceehh
Confidence 9999999999999999988887332 2356778899999999999999999999999999884 6667888
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..+|.++...|+|+.|++.++.+++. ++.....+...|..+|...|+.++.+..+.++.+....
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--------- 281 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--------- 281 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC---------
Confidence 89999999999999999999999886 66677888899999999999999999999998876422
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..+...++++-....-.+.|..++.+-+...++
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 344555667777777777788777776664443
No 50
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.59 E-value=2.2e-13 Score=113.39 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
..+..+...|..|...|++++|...|.++.+...+.. +....+..+...+.++... ++++|+.+++++++++...+.
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence 4577788889999999999999999999999988752 4556677888888887666 999999999999999876543
Q ss_pred CCChhHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQ-GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+ ...+.++..+|.+|... |++++|+++|+++.++++..+ .......++..+|.++...|+|++|++.|++.....
T Consensus 110 ~--~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 110 F--SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp H--HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred H--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 3 55688999999999999 999999999999999999876 455667788899999999999999999999987754
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..... ........+...+.++...|+...|...+++.....+.
T Consensus 186 l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 186 LENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp CCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred hcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 22211 11233456677888999999999999999887765443
No 51
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.59 E-value=8e-13 Score=110.03 Aligned_cols=230 Identities=15% Similarity=0.107 Sum_probs=171.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+....+..+...|..|...|++++|...|.++.+...+. .+....+.++...+.++... ++++|+.+++++++++..
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence 555678889999999999999999999999999998875 44556788888888888776 999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
.. .....+.++..+|.+|... |++++|+++|++|+++++.... ......++..+|.++...|+|++|++.|++..
T Consensus 107 ~G--~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 107 AG--RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--PHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp CT---HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cC--cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 63 4556688999999999999 9999999999999999976542 24557788999999999999999999999987
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH--cCCHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS--TGSLMEAQE 354 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~ 354 (377)
........ .....-..+...+.+++..|++..|...+++........ .+..-......|-..+.. ...+++|+.
T Consensus 183 ~~~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 183 KKCLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HTCCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHhhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 75332221 123444556778889999999999988888876553222 223334555666666553 345566655
Q ss_pred HHHH
Q 017109 355 LFER 358 (377)
Q Consensus 355 ~~~~ 358 (377)
-|..
T Consensus 259 ~~d~ 262 (282)
T PF14938_consen 259 EYDS 262 (282)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 5544
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.1e-14 Score=121.89 Aligned_cols=229 Identities=15% Similarity=0.068 Sum_probs=96.8
Q ss_pred hhhcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHH
Q 017109 89 SIESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASAC 168 (377)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 168 (377)
.......|++++|.....+.+... .+|.....+..+|.+....+++++|+..|++.+.. ++.....+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~-----~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~~~ 81 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKI-----APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccc--------cccccccc
Confidence 334455677777776665443322 12334477788899999999999999999999876 44455667
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
..++.+ ...+++++|..+++++.+.. .++ ..+.....++...++++++...++++.... ..+..
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ 145 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP------AAPDS 145 (280)
T ss_dssp ----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------T-
T ss_pred cccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc------CCCCC
Confidence 777777 68999999999998887642 122 345566778899999999999999977432 12455
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
...+..+|.++...|+.++|+..++++++..+ ....+...++.++...|+++++.+.+.........
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P--------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~----- 212 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDP--------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD----- 212 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T--------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-----
Confidence 77889999999999999999999999999832 22345677888999999999988888877766422
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
....+..+|.++...|++++|+.++++++..
T Consensus 213 ---~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 213 ---DPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp ---SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccccccccccccccccccc
Confidence 2345678899999999999999999999874
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=114.72 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+.++.+.|.+.+..|++++|.+.|++++.- +..-..+++++|..+..+|+.++|+++|-+.-.+....
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn---- 557 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN---- 557 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh----
Confidence 345566677777788888888888888753 56677888888888888888888888888777664432
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
+.++..++.+|..+.+..+|++++.++..+. |..+.++..||.+|-+.|+-.+|.+++-.....++
T Consensus 558 ----~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyryfp-- 623 (840)
T KOG2003|consen 558 ----AEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP-- 623 (840)
T ss_pred ----HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC--
Confidence 5677888888888888888888888877664 55566777788888888888777777766555422
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
....+...||..|....-+++|+.+++++--+. |....-...++.|+.+.|+|.+|...|+..-.
T Consensus 624 ------~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 624 ------CNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred ------cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 223344567777777777777777777765442 33355556677888888888888887776544
No 54
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=4.2e-13 Score=120.27 Aligned_cols=229 Identities=19% Similarity=0.160 Sum_probs=160.4
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+.|... |....+|+.+|.+|..+|+.+++....-.|-.+ .|.....|..++.
T Consensus 151 arg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~p~d~e~W~~lad 215 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------NPKDYELWKRLAD 215 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------CCCChHHHHHHHH
Confidence 3699999999999988654 344577888888888888888888877777655 4444577777788
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH---------------
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG--------------- 238 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------- 238 (377)
....+|++++|.-+|.+|++. . |.........+.+|.++|+...|...+.+.+....
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~-----~---p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQA-----N---PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhc-----C---CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 888888888888888888775 1 11123334444444444444444444433332111
Q ss_pred ------------------------H------------------------------hc-----------------------
Q 017109 239 ------------------------R------------------------------VL----------------------- 241 (377)
Q Consensus 239 ------------------------~------------------------------~~----------------------- 241 (377)
. ..
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 0 00
Q ss_pred ---------------------------------------CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 242 ---------------------------------------GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 242 ---------------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
..........+..++..+...|++.+|+.++..+...
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~---- 443 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR---- 443 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC----
Confidence 0001123445677888888999999999998887653
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
.......+|..+|.||..+|.+++|+++|++++... |....+...|+.++..+|++++|.+.++...
T Consensus 444 ---~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--------p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 444 ---EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--------PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred ---ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 222336678999999999999999999999999874 5558899999999999999998877776543
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.58 E-value=9.5e-13 Score=110.40 Aligned_cols=192 Identities=15% Similarity=0.032 Sum_probs=140.4
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....+++.+|.++...|++++|+..|++++++ +|....++.++
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~l 138 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNR 138 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 345688888888888777643 345689999999999999999999999999988 77788899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..++++++. .|+++.. ..+ ..+....+++++|+..+.++.... . +..
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~----~---~~~--- 199 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKL----D---KEQ--- 199 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhC----C---ccc---
Confidence 99999999999999999999987 4555421 111 223456789999999998766432 1 111
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+ ..+.+....|+..++ ..++.+.+..+.. ....+....++.++|.++...|++++|+.+|+++++.
T Consensus 200 ~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~-~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 200 W-GWNIVEFYLGKISEE-TLMERLKAGATDN-TELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred c-HHHHHHHHccCCCHH-HHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 134555667777654 3444443321110 0012345678999999999999999999999999976
No 56
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.56 E-value=2.4e-12 Score=103.35 Aligned_cols=217 Identities=15% Similarity=0.113 Sum_probs=177.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|..+.-...+|..++..|++..|+..|..|++. +|....+++..|.+|..+|+-.-|+.-+.+++++
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---- 101 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---- 101 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----
Confidence 3445566788999999999999999999999986 8999999999999999999999999999999997
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHcCChhhHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG-------NIDYADTMYHLATVLYLQGKENDSEAL 271 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (377)
.|+...+....|.++.++|++++|+.-|+..++......... .......+......+...|+...|+++
T Consensus 102 ----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 102 ----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred ----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 566678899999999999999999999999887632110000 001112233445556678999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHH
Q 017109 272 FLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLME 351 (377)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 351 (377)
....+++ .+..+..+...+.+|...|++..|+.-++.+-++. .+..+.++.++.+++..|+.+.
T Consensus 178 i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 178 ITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHH
Confidence 9999986 34555667788999999999999999999988774 2337889999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCC
Q 017109 352 AQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 352 A~~~~~~al~~~~~~~~~~~~ 372 (377)
++...++++. ++++|.
T Consensus 242 sL~~iRECLK-----ldpdHK 257 (504)
T KOG0624|consen 242 SLKEIRECLK-----LDPDHK 257 (504)
T ss_pred HHHHHHHHHc-----cCcchh
Confidence 9999999998 556653
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=3.1e-12 Score=106.54 Aligned_cols=210 Identities=15% Similarity=0.103 Sum_probs=175.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|++++|...+.+++.. +..-.++++++|..+...|+.++|+++|-+.-.+. ...+.++..+
T Consensus 500 ~f~ngd~dka~~~ykeal~n-------dasc~ealfniglt~e~~~~ldeald~f~klh~il--------~nn~evl~qi 564 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNN-------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--------LNNAEVLVQI 564 (840)
T ss_pred eeecCcHHHHHHHHHHHHcC-------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--------HhhHHHHHHH
Confidence 34478899999999988854 34456899999999999999999999999887773 4568899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+.+|..+.+..+|++++.++..+ -|++| .++..+|.+|-+.|+-.+|.+++-.....+ |.....
T Consensus 565 aniye~led~aqaie~~~q~~sl-----ip~dp---~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~ 628 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-----IPNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIET 628 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-----CCCCH---HHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHH
Confidence 99999999999999999999887 34454 678899999999999999999998887776 666677
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
.-.||..|....-+++|+.+++++--+ .|........++.|+.+.|+|.+|.+.|+..-..+ |.
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf--------pe 692 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF--------PE 692 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--------cc
Confidence 778899999999999999999998665 33444556678999999999999999999876654 55
Q ss_pred HHHHHHHHHHHHHHcCC
Q 017109 332 TVIAAEGLALTLQSTGS 348 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~ 348 (377)
...++..|.++.-..|-
T Consensus 693 dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred chHHHHHHHHHhccccc
Confidence 57888888888877764
No 58
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.54 E-value=2.4e-12 Score=111.99 Aligned_cols=213 Identities=14% Similarity=0.039 Sum_probs=156.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|+....+..+|.++...|+.+.+...+.++...... +..........+.++...|++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---- 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD---- 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence 3556778889999999999999998888887766432 2234455667788999999999999999999886
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.|++. .++.. +..+...|++..+.....+++.. ..+.++........+|.++..+|++++|+..+++++++
T Consensus 73 -~P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 73 -YPRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred -CCCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33333 33333 55566666555555555555443 23455777778888999999999999999999999987
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.+. ....+..+|.++...|++++|+.++++++..... ........+..++.++...|++++|...+++
T Consensus 144 ~p~--------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 144 NPD--------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred CCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 322 2345778899999999999999999998876432 1112245677899999999999999999998
Q ss_pred HHH
Q 017109 359 CLE 361 (377)
Q Consensus 359 al~ 361 (377)
++.
T Consensus 212 ~~~ 214 (355)
T cd05804 212 HIA 214 (355)
T ss_pred Hhc
Confidence 854
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=6.3e-12 Score=110.11 Aligned_cols=232 Identities=13% Similarity=0.009 Sum_probs=169.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|+++.+.....++.+..+ +.. .......+.++...|++++|+..+++..+. .|....++..+
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~----~~~--~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll 193 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELAD----NDQ--LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLA 193 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCC----cch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Confidence 3568888888888888764332 211 122234488999999999999999999876 67778899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHH-------------------HHh---------------cCCCchhHHHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKIL-------------------QES---------------FGPEDIRIGVAFHNLGQFY 217 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~-------------------~~~---------------~~~~~~~~~~~~~~la~~~ 217 (377)
+.+|...|++++|.+.+.+..+.. ... .....+....+...++..+
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l 273 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHH
Confidence 999999999999997776665320 000 0001122345667788899
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
...|+.++|...++++++. +.++... ...+. ...++++++++.+++.++. +|.....+..+
T Consensus 274 ~~~g~~~~A~~~L~~~l~~------~~~~~l~---~l~~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~l 334 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR------QYDERLV---LLIPR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTL 334 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc------CCCHHHH---HHHhh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHH
Confidence 9999999999999888773 1123221 22222 2448888998888887764 33344567789
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|.++...|++++|.++|+++++.. |+ ...+..++.++...|+.++|..+|++++.+..+
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~--------P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQR--------PD-AYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999872 32 345668999999999999999999999986543
No 60
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.53 E-value=6.8e-11 Score=115.64 Aligned_cols=264 Identities=14% Similarity=0.035 Sum_probs=195.5
Q ss_pred cCCChhhhhhhhhhhhccccccc--cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVS--NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
..|+++++.....++.......+ .+......+...+|.++...|++++|...+++++..... .+......+...+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~l 497 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVL 497 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHH
Confidence 46777777777766544332211 111224556666889999999999999999999875211 1222345677889
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|...+++++...+... .......++..+|.++...|++++|...+++++...........+.....
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 9999999999999999999999877652 23334567889999999999999999999999999877654433444555
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC---
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN--- 328 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--- 328 (377)
+..+|.++...|++++|...+.+++.+..... .......+..+|.++...|++++|...+.++..+........
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 67889999999999999999999999877543 223455677899999999999999999999877643321000
Q ss_pred ----------------------------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 329 ----------------------------------SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 329 ----------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..........++.++...|++++|...+++++...+.
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0001112457888999999999999999999987654
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=3.2e-11 Score=106.26 Aligned_cols=242 Identities=15% Similarity=0.042 Sum_probs=162.6
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|+++.+.....++.+... +.. ..+....+.++...|++++|...+++.++. .|....++..+
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p----~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll 193 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAG----NDN--ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLA 193 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC----cCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 3446777777777777653221 111 123334588888889999999888888876 56667788899
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHH----------------------HH---------hc--CC-CchhHHHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKIL----------------------QE---------SF--GP-EDIRIGVAFHNLGQFY 217 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~----------------------~~---------~~--~~-~~~~~~~~~~~la~~~ 217 (377)
+.++...|++++|.+.+.+..+.. .. .. .| ..+.....+..++..+
T Consensus 194 ~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l 273 (409)
T TIGR00540 194 EEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL 273 (409)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence 999999999998888877766420 00 00 00 0012346677788888
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
...|++++|.+.++++++.. +++...... ..........++.+.+++.++++++. .++++. ......+
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~~~~-~~ll~sL 341 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN-----VDDKPK-CCINRAL 341 (409)
T ss_pred HHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh-----CCCChh-HHHHHHH
Confidence 88999999999999888864 222211101 12222333456777787777777764 223343 3567789
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
|.++...|++++|.++++++..... .|+ ...+..+|.++...|+.++|.+++++++...-.+
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~------~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKE------QLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999995433321 122 2335589999999999999999999998876553
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-11 Score=104.96 Aligned_cols=216 Identities=19% Similarity=0.200 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+.-...+|.......++..|++.|..++++ + .....+.+.+.+|...|.+.+.+.....+++...... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 4556778999999999999999999999998 4 5566778899999999999999999999888654431 1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--h----------------cCCCChhHHHHHHHHHHHHHHcC
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR--V----------------LGHGNIDYADTMYHLATVLYLQG 263 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~----------------~~~~~~~~~~~~~~la~~~~~~g 263 (377)
+...++.+...+|..|..+++++.|+.+|++++.-.+. . ..--.|....--..-|..++..|
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 23345666777888999999999999999998865432 0 00012333444556689999999
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHH
Q 017109 264 KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTL 343 (377)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 343 (377)
+|..|+..|.++++. .|.....|.+.|.+|..+|.+..|+...+.++++ +|.....|..-|.++
T Consensus 373 dy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAAL 436 (539)
T ss_pred CHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHH
Confidence 999999999999885 3566778999999999999999999999999988 466789999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 017109 344 QSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 344 ~~~g~~~~A~~~~~~al~~~ 363 (377)
..+.+|++|.+.|.++++..
T Consensus 437 ~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999854
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=2.3e-11 Score=111.81 Aligned_cols=168 Identities=13% Similarity=0.003 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
++.++-.+....|....+...+-+++...+. .+....++..||.+....|++++|..+++.++++ .|
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~P 117 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FP 117 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CC
Confidence 3444445556667777777777777777654 4666889999999999999999999999999998 44
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
....+..+++.++.+.+++++|+..+++++... |+...+++.+|.++...|++++|+.+|++++..
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------ 183 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------SSSAREILLEAKSWDEIGQSEQADACFERLSRQ------ 183 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 446889999999999999999999999999885 777889999999999999999999999999872
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
++....++..+|.++...|+.++|...|+++++..
T Consensus 184 --~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 --HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 33445668889999999999999999999999875
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.44 E-value=1.3e-10 Score=101.24 Aligned_cols=236 Identities=15% Similarity=0.081 Sum_probs=162.3
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
.+.+|........+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 107 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 107 APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 3466777788888999999999999999999999987 55667788999999999999999999999998863
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCChhhHHHHHH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT--MYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~ 273 (377)
.. +.......+..+|.++...|++++|+..+++++... +........ ...+...+...|....+..+ +
T Consensus 179 ~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~ 248 (355)
T cd05804 179 DC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-E 248 (355)
T ss_pred CC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-H
Confidence 21 122234567789999999999999999999985432 101111111 11223334444543333333 3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc-CCCChhHHHHHHHHHHHHHHcCCHHHH
Q 017109 274 ESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK-GWNSLDTVIAAEGLALTLQSTGSLMEA 352 (377)
Q Consensus 274 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A 352 (377)
.+........ +. ..........+.++...|+.++|...++......+... .......+......+.++...|++++|
T Consensus 249 ~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 249 DLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 3332222211 11 11122223578888899999999999998887765510 111223466777889999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCC
Q 017109 353 QELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 353 ~~~~~~al~~~~~~~~~~~~ 372 (377)
...+..++.....+ |..|.
T Consensus 327 ~~~L~~al~~a~~~-ggs~a 345 (355)
T cd05804 327 LELLGPVRDDLARI-GGSHA 345 (355)
T ss_pred HHHHHHHHHHHHHh-CCcHH
Confidence 99999999998664 44443
No 65
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.42 E-value=1.3e-10 Score=112.03 Aligned_cols=229 Identities=12% Similarity=0.030 Sum_probs=142.0
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+.......+.++ ..++..+...|...|++++|.+.|++..+. +-+....++..+..
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ 622 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVN 622 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHH
Confidence 3455666655555544322222222 245556666666777777777777666543 11223456666777
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
.|...|++++|...|.+..+. +- .|. ..+|..+...|...|++++|.++++++.+.- . .....++.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~-----Gv-~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-----~--~pd~~tyn 688 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKK-----GV-KPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQG-----I--KLGTVSYS 688 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----C--CCCHHHHH
Confidence 777777777777777766543 11 111 3466677777777777777777777765431 1 22345677
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.+...|.+.|++++|..+|++..+. + -.| ...+|..+...|.+.|++++|.+++++.... +. .|+ .
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~----g--~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-----Gi-~Pd-~ 754 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSI----K--LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRL-----GL-CPN-T 754 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc----C--CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CC-CCC-H
Confidence 7788888888888888888776542 1 111 1245777888888888888888888876532 11 121 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.++..+...+...|+.++|..++.++++
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666666788888888888888887765
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.3e-11 Score=97.28 Aligned_cols=211 Identities=18% Similarity=0.171 Sum_probs=163.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH---------------------------
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL--------------------------- 174 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--------------------------- 174 (377)
....+..+|.+++..|++++|+..|+++.-+ +|.....+-..|.+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~ 302 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH 302 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh
Confidence 4567888999999999999999999998764 44444443333333
Q ss_pred -------HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 175 -------YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 175 -------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
.+...++..|+.+.++++.. ++....++...|.++...|+.++|+-.|+.|..+. |.
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~ 366 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------PY 366 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------hh
Confidence 34445555666666666554 33345788899999999999999999999999886 77
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC----------------------------CCCCHHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENG----------------------------EGDSMTCIRRLRYLAQ 299 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~~~~~~~~~~~~~la~ 299 (377)
...+|..|-.+|...|++.+|....+.+++.+.... ....|....+...+|.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 788999999999999999999888877666544321 1122445556678899
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
++...|++..++.++++.+..... ......||+++...+.+.+|..+|..++.+.++
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D---------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPD---------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhccc---------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 999999999999999999987522 467788999999999999999999999986443
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.42 E-value=7e-12 Score=92.96 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC
Q 017109 143 EKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK 222 (377)
Q Consensus 143 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 222 (377)
...+++++++ +|.. +..+|.++...|++++|..+|++++.. +|....++..+|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4677888876 5554 557899999999999999999999987 44456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 223 LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 223 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+++|+..|++++.+. |....+++++|.++...|++++|+..|++++++.
T Consensus 74 ~~~A~~~y~~Al~l~--------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALMLD--------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999874 6778899999999999999999999999999973
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=6.1e-11 Score=103.93 Aligned_cols=229 Identities=13% Similarity=0.092 Sum_probs=163.3
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH-HHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV-ASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l 171 (377)
...|+++.|........... +.|. -.+...+......|+++.|..++.++.+. .|.. .......
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~-----~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~--------~~~~~~~~~l~~ 159 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHA-----EQPV--VNYLLAAEAAQQRGDEARANQHLERAAEL--------ADNDQLPVEITR 159 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcc-----cchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCcchHHHHHHH
Confidence 34689988886655433221 1221 22444466669999999999999999875 3332 2233345
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--------------
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK-------------- 237 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 237 (377)
+.++...|++++|...+++..+. .|++ ..++..++.+|...|++++|...+.+..+..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~-----~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEV-----APRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA 231 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999999887 4444 4788889999999999999997766655210
Q ss_pred -----HH---------------hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 238 -----GR---------------VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 238 -----~~---------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
.. ......+..+.+...++..+...|+.++|...++++++. . .++.... ..
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-----~-~~~~l~~---l~ 302 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-----Q-YDERLVL---LI 302 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C-CCHHHHH---HH
Confidence 00 000112334567778899999999999999999998873 1 2222221 12
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+. ...++++++++.+++.++. +|+....+..+|.++...|++++|..+|+++++..
T Consensus 303 ~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 303 PR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred hh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 22 2448999999998887765 45557889999999999999999999999999853
No 69
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.40 E-value=1.2e-10 Score=93.88 Aligned_cols=239 Identities=15% Similarity=0.084 Sum_probs=182.4
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhh--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHh
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTS--------KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPH 163 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 163 (377)
...+|.+++|...+...+...+.-+..... --..+......+...|+...++++....+++ .|.
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~W 187 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPW 187 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------Ccc
Confidence 345899999999998888766532211110 1122344455667789999999999999988 788
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+..+...+.+|...|+...|+.-++.+-++ ..++ ...++.++.+++..|+.+.++...++++++. +
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askL-----s~Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLKld-----p 254 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKL-----SQDN---TEGHYKISQLLYTVGDAENSLKEIRECLKLD-----P 254 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----cccc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHccC-----c
Confidence 8999999999999999999999999998887 2222 5788999999999999999999999999873 4
Q ss_pred CChhHHHHHHHH---------HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 244 GNIDYADTMYHL---------ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 244 ~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
+|......|-.+ +.-....++|.++++..++.++.-++ ..+........+..|+..-|++.+|+..+
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~----~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE----ETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc----ccceeeeeeheeeecccccCCHHHHHHHH
Confidence 444333333222 34455677888888888877764221 12334445566788999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.+++++ .|+.+.++...+..|.....|+.|+.-|+++.+..
T Consensus 331 ~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 331 KEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 999987 36668999999999999999999999999998853
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.39 E-value=7.8e-11 Score=108.35 Aligned_cols=156 Identities=11% Similarity=0.067 Sum_probs=132.0
Q ss_pred cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017109 179 KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV 258 (377)
Q Consensus 179 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 258 (377)
+....+.+.+-+++.+.+. .+....++.+||.+....|++++|+..++.++++. |+...+..+++.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~ 129 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRG 129 (694)
T ss_pred hhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHH
Confidence 4444444445555555443 34446899999999999999999999999999996 8888999999999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHH
Q 017109 259 LYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEG 338 (377)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 338 (377)
+.+.+++++|+..+++++.. .|.....+..+|.++.+.|++++|+.+|++++.. +|+...++..
T Consensus 130 L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~ 193 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVG 193 (694)
T ss_pred HHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 99999999999999999986 3455667889999999999999999999999873 3455789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 339 LALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 339 la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+|.++...|+.++|...|+++++..
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999998853
No 71
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.39 E-value=4.5e-12 Score=83.59 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=70.1
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
||..+.++..+|.+|...|++++|+.+|++++++ .+..+++++..+.++.++|.++...|++++|++++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5788999999999999999999999999999999 66666677788999999999999999999999999999998653
No 72
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.38 E-value=3.2e-10 Score=109.33 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.++..+...|...|++++|.+.|++..+. + .+....+|..+...|.+.|++++|..+|++..+.- - .
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-----v-~ 646 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEY-----N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-----V-K 646 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C-C
Confidence 34455555555556666665555554442 1 11123456666666666666666666666654331 1 1
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
|+ ...+..+...+...|++++|.++++++.+. + ......++..+...|.+.|++++|.+.|++....
T Consensus 647 PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----- 713 (1060)
T PLN03218 647 PD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----G---IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI----- 713 (1060)
T ss_pred CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 22 345666777777777777777777776542 1 1112345777888888888888888888876542
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 326 GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 326 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
+. .| ...++..+...|.+.|++++|.+++++...
T Consensus 714 g~-~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 714 KL-RP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred CC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 12 256788889999999999999999988754
No 73
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.38 E-value=7.3e-12 Score=82.58 Aligned_cols=77 Identities=35% Similarity=0.565 Sum_probs=69.7
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
+|..+.++.++|.+|..+|++++|+.++++++++ .+..+++++..+.++.++|.++..+|++++|++++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4788999999999999999999999999999999 5555777788899999999999999999999999999999875
No 74
>PLN02789 farnesyltranstransferase
Probab=99.37 E-value=2.8e-10 Score=95.44 Aligned_cols=200 Identities=8% Similarity=-0.075 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHHhcC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-AFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~ 200 (377)
...++..+-.++...+++++|+..+.+++++ +|....++...+.++...| ++++++..+.+++..
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------ 101 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED------ 101 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------
Confidence 3455555556677788999999999999998 8888999999999999998 689999999999987
Q ss_pred CCchhHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKL--EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+|....++...+.++...|+. ++++.+++++++.. +....++...+.++...|+++++++++.++++.
T Consensus 102 --npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 102 --NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred --CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334456899999999888874 67888998988874 777889999999999999999999999999987
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHh---CCh----hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH----cC
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKA---NRL----TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS----TG 347 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g 347 (377)
- +....++...+.+.... |.+ ++++.+..+++... |....++..++.++.. .+
T Consensus 172 d--------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 172 D--------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN--------PRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred C--------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC--------CCCcCHHHHHHHHHhcCCcccc
Confidence 2 22345677777777655 333 46788888888773 4446677788888877 34
Q ss_pred CHHHHHHHHHHHHH
Q 017109 348 SLMEAQELFERCLE 361 (377)
Q Consensus 348 ~~~~A~~~~~~al~ 361 (377)
+..+|...+.+++.
T Consensus 236 ~~~~~~~~~~~~~~ 249 (320)
T PLN02789 236 SDPEVSSVCLEVLS 249 (320)
T ss_pred cchhHHHHHHHhhc
Confidence 55667777777655
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=1.3e-11 Score=91.47 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
+..+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..|++++.+ . |.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~---p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----D---AS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----C---CC
Confidence 556899999999999999999999987 7888999999999999999999999999999997 3 33
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
...++.++|.++...|++++|+..|++++.+. |.....+.+.+.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHH
Confidence 46899999999999999999999999999985 5555666666665543
No 76
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=3.6e-10 Score=99.61 Aligned_cols=233 Identities=10% Similarity=0.056 Sum_probs=167.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH-HHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV-ASACNN 170 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~ 170 (377)
+...|+++.|.....+..... |.....+...|..+...|++++|..++.++.+. .|.. ..+...
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~-------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--------~p~~~l~~~~~ 158 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA-------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--------AGNDNILVEIA 158 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCcCchHHHHH
Confidence 455899999988887655432 222355667799999999999999999999765 2222 234445
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH------------
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG------------ 238 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------ 238 (377)
.+.++...|++++|...+++..+. .|+++ .++..++.++...|++++|.+.+.+..+...
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEM-----APRHK---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK 230 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 699999999999999999999887 44454 6788999999999999999988877663200
Q ss_pred ---H-h----c----------CCCCh----hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017109 239 ---R-V----L----------GHGNI----DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296 (377)
Q Consensus 239 ---~-~----~----------~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 296 (377)
. . . -...| ........++..+...|++++|...++++++..+. +..... ...
T Consensus 231 a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-----~~~~~~-~~l 304 (409)
T TIGR00540 231 AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-----DRAISL-PLC 304 (409)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-----cccchh-HHH
Confidence 0 0 0 00011 24567778889999999999999999999986332 211100 011
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHH
Q 017109 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV--IAAEGLALTLQSTGSLMEAQELFER--CLE 361 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~--al~ 361 (377)
........++.+.+++.++++++. +|+.. .....+|.++...|++++|.+++++ +++
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 222333457778888888887765 23335 7788999999999999999999995 544
No 77
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.35 E-value=1.4e-10 Score=108.72 Aligned_cols=196 Identities=11% Similarity=-0.019 Sum_probs=154.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+...+..+.+..+.|+++.|+..++++++. +|........+..++...|+.++|+.++++++.-
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p------- 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS------- 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-------
Confidence 3457788899999999999999999999987 5554322238888888899999999999999821
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
.+........+|.++..+|++++|++.|+++++.. |....++..++.++...++.++|+..++++.+..+.
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 22224566667889999999999999999999884 555667778899999999999999999998876221
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.. .+..++.++...++..+|++.++++++.. |.....+..+..++...|-...|.+..++
T Consensus 169 --------~~-~~l~layL~~~~~~~~~AL~~~ekll~~~--------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 169 --------VQ-NYMTLSYLNRATDRNYDALQASSEAVRLA--------PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred --------hH-HHHHHHHHHHhcchHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 11 12445666666788877999999999873 55577888888899999998888877664
No 78
>PLN02789 farnesyltranstransferase
Probab=99.34 E-value=5.6e-10 Score=93.59 Aligned_cols=205 Identities=12% Similarity=0.056 Sum_probs=158.3
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQG-KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
.+.+++|.....++|. ..|....++...+.++...| ++++++.++.++++. +|....++...+.
T Consensus 50 ~e~serAL~lt~~aI~-------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~ 114 (320)
T PLN02789 50 DERSPRALDLTADVIR-------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRW 114 (320)
T ss_pred CCCCHHHHHHHHHHHH-------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHH
Confidence 4555666667666664 34556688999999999998 689999999999987 7778888999999
Q ss_pred HHHHhcCH--hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 174 LYRVKKAF--DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 174 ~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+....|+. ++++.++.++++. ++....++...+.++...|+++++++++.++++.. +....+
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------~~N~sA 178 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------VRNNSA 178 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------CCchhH
Confidence 98888874 6788888899887 44556899999999999999999999999999884 566778
Q ss_pred HHHHHHHHHHc---CCh----hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQ---GKE----NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHI 320 (377)
Q Consensus 252 ~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 320 (377)
++..+.+.... |.+ ++++.+..+++.+.+. ...++..++.++.. .++..+|.+.+.+++..
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~--------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR--------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC--------CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 88888887765 333 4678888888887332 23457778888776 35567788888776652
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
.+....++..|+.+|...
T Consensus 251 --------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 251 --------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred --------cCCcHHHHHHHHHHHHhh
Confidence 244467888899999864
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.32 E-value=9.9e-11 Score=91.13 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=137.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|+|.+|+..++++...
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----- 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----- 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence 334455 78888999999999998888886643 5555666667999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.|....+++.+|.+|.+.|++++|..-|.+++++. +....+.+|+|..+.-.|+++.|..++..+...
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~- 197 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS- 197 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 33346899999999999999999999999999997 566778999999999999999999999998763
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
......+..+++.+...+|++++|.....+
T Consensus 198 -------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 -------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 222345578999999999999999877654
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3e-10 Score=96.84 Aligned_cols=221 Identities=12% Similarity=0.059 Sum_probs=156.8
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
+...++..+...+..+++.. .-.......+.++..++......+.-+.|++.-.+.... ...++.++..+|
T Consensus 235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad--------~klIak~~~r~g 305 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD--------YKLIAKALARLG 305 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH--------HHHHHHHHHHhh
Confidence 33455566666666666665 333355556677777777777777777777766666554 233556666677
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHh--c----------------CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQES--F----------------GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERAL 234 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~--~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 234 (377)
..|...++++.|+.+|++++.-.+.- . .--.|..+.--..-|..++..|+|..|+.+|.+++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 78887788888888887776543220 0 00123334445566888888999999999999987
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 235 KIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
... |.....|.|.|.+|...|.+..|+...+.++++ +|.....|..-|.++..+.+|++|++.|
T Consensus 386 kr~--------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 386 KRD--------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred hcC--------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 763 777888999999999999999999998888886 5566777888899999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
+++++.. |....+...+.++...+
T Consensus 450 ~eale~d--------p~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 450 QEALELD--------PSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHhcC--------chhHHHHHHHHHHHHHh
Confidence 9888763 45566666777776654
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.31 E-value=1.8e-10 Score=90.14 Aligned_cols=121 Identities=14% Similarity=0.221 Sum_probs=106.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
.++.++++..++++++. +|.....+..+|.+|...|++++|+..|++++.+ .|+ ...++..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~---~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGE---NAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHH
Confidence 56778899999999987 7888999999999999999999999999999998 333 3578899999
Q ss_pred HH-HHccC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 216 FY-LVQRK--LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 216 ~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++ ...|+ +++|...++++++.. |....++..+|..+...|++++|+.+++++++..+
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 75 67787 599999999999984 66778999999999999999999999999998743
No 82
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9e-11 Score=96.75 Aligned_cols=245 Identities=16% Similarity=0.088 Sum_probs=178.9
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHhhCC--CCCHh
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSAL--------QEAKEGFG--ERDPH 163 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~--~~~~~ 163 (377)
..|+++++.....+.++...... ......+.++...++..+|.+.++..- ...+.+.. ...|.
T Consensus 95 ~~~~~~~a~~dar~~~r~kd~~~-------k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pa 167 (486)
T KOG0550|consen 95 MLGRFEEALGDARQSVRLKDGFS-------KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPA 167 (486)
T ss_pred HHHhHhhcccchhhheecCCCcc-------ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCch
Confidence 35666666665555554433222 344556666666666666665554211 11111111 11244
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG- 242 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 242 (377)
...+...-+.++...|++++|...-...+++ ++....++...|.++...++.+.|+.++++++.+......
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s 239 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS 239 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH
Confidence 5566677788999999999999888877776 4444678888999999999999999999999987421100
Q ss_pred ---CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 243 ---HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 243 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
...+.....+..-|.-..+.|++..|.+.|.+++.+.+. +....+..|.+.+.+...+|+..+|+.-++.++.
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 001334455667788889999999999999999998554 3345677899999999999999999999999999
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 320 IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
+ ++..+.++...|.++...+++++|.+.++++++....
T Consensus 316 i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 316 I--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred c--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8 4667999999999999999999999999999986544
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=1.1e-09 Score=97.35 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=177.4
Q ss_pred hhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH
Q 017109 102 NAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF 181 (377)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 181 (377)
....++.++.....++.+| .+.+.++.-|...++.+.|....++++++. ....+.++..++.++...+++
T Consensus 460 h~kslqale~av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhh
Confidence 3444555555555555655 778899999999999999999999999872 234577888889999888998
Q ss_pred hHHHHHHHHHHHHHHHhcC-------------------------------------------------------------
Q 017109 182 DKAEPLYLEAIKILQESFG------------------------------------------------------------- 200 (377)
Q Consensus 182 ~~A~~~~~~al~~~~~~~~------------------------------------------------------------- 200 (377)
.+|+.....+++-....++
T Consensus 530 ~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 8888887777654333000
Q ss_pred --------------------------------CCc--hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 201 --------------------------------PED--IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 201 --------------------------------~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+++ ......+...+..+...++.++|..++.++-.+. +
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~ 681 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------P 681 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------h
Confidence 000 0112334566777777788888888888887775 6
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH--HHHHHHHHHHhc
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET--VQRKILHIMESS 324 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~ 324 (377)
.....++..|.++...|+..+|.+.|..++.+. |....+...+|.++...|+..-|.. ++..++++
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~---- 749 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL---- 749 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----
Confidence 778889999999999999999999999999872 2233456789999999999888888 89999887
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 325 KGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 325 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
+|...++|+.+|.++..+|+.++|.++|..++++.++
T Consensus 750 ----dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 750 ----DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred ----CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 3566899999999999999999999999999997655
No 84
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.31 E-value=1.8e-10 Score=108.86 Aligned_cols=218 Identities=14% Similarity=0.037 Sum_probs=129.5
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|++++|...+.+... ....+|+.+...|...|++++|+.+|++..+. +-.| ...++..+
T Consensus 269 y~k~g~~~~A~~vf~~m~~----------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~p-d~~t~~~l 331 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPE----------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS------GVSI-DQFTFSIM 331 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC----------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHH
Confidence 3456788888777765421 13467888999999999999999999887653 1122 23467777
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
..++...|++++|.+.+..+++. + .+....+++.+...|.+.|++++|...|++..+ + ...+
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~-----g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t 393 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRT-----G--FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLIS 393 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-----C--CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-Ceee
Confidence 88888888888888888777664 1 111134566677777777777777777765421 1 1245
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
|+.+...|...|+.++|+++|++..+. + -.|+ ..++..+...+...|+.++|.++|+...+.. +. .|
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~----g--~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~-~p- 460 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAE----G--VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RI-KP- 460 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CC-CC-
Confidence 666667777777777777777765542 1 0111 1224445555556666666666665554321 00 01
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
....+..+..++.+.|+.++|.+.++
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHH
Confidence 12334445555555555555554443
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.30 E-value=2.7e-10 Score=89.20 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=118.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
..+..|+..|+++......++.. ++.. -+...++.++++..++++++. +|...
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~----------~~~~---------~~~~~~~~~~~i~~l~~~L~~--------~P~~~ 73 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA----------DPLH---------QFASQQTPEAQLQALQDKIRA--------NPQNS 73 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh----------Cccc---------cccCchhHHHHHHHHHHHHHH--------CCCCH
Confidence 34567888999887654432211 1110 111267778999999999987 34446
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCC--hhhHHHHHHHHHHHHHHcCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL-YLQGK--ENDSEALFLESIRILEENGE 284 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~ 284 (377)
..+..+|.+|...|++++|+..|++++.+. |....++..+|.++ ...|+ +++|...++++++.
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~------ 139 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL------ 139 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh------
Confidence 899999999999999999999999999985 66788899999975 67787 59999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
++....++..+|..+...|++++|+.+++++++..
T Consensus 140 --dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 140 --DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred --CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 33345678999999999999999999999999875
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.29 E-value=4.1e-09 Score=83.21 Aligned_cols=170 Identities=23% Similarity=0.212 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
....++..|...+..|++.+|+..|++.+... +.++....+.+.+|.++...|++++|+..+++.++. -|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YP 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CC
Confidence 35778999999999999999999999999874 557788999999999999999999999999999987 45
Q ss_pred CchhHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQR-----------KLEDACTYYERALKIKGRVLGHGNIDY--------------ADTMYHLA 256 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~--------------~~~~~~la 256 (377)
+++....+++.+|.++..+. ...+|...++..+... |+++.. +.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999999876653 3347788888777665 222322 22234578
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 257 TVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
..|.+.|.+..|+..++.+++.. ++.+....++..++..|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999998874 356677788999999999999988543
No 87
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.29 E-value=5.6e-10 Score=81.21 Aligned_cols=102 Identities=18% Similarity=0.096 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
++..+..+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 667788999999999999999999999999988 8999999999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.+++ ...+.++|.++...|+.+.|.+.|+.++..+
T Consensus 99 ~~dd---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 KIDA---PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4455 4789999999999999999999999999998
No 88
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.29 E-value=9e-10 Score=99.41 Aligned_cols=206 Identities=18% Similarity=0.240 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
++.+...|+..+..|++++|++.+.+++.. +|....++..||.+|..+|+.+++....-.|-.+ .|.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~ 205 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPK 205 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCC
Confidence 567778888999999999999999999987 7889999999999999999999999998888877 333
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
++ ..|..++....++|++.+|.-+|.+|++.. |.........+.+|.+.|+...|...+.+++...+..
T Consensus 206 d~---e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 206 DY---ELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred Ch---HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 43 678899999999999999999999999985 6667788899999999999999999999999875411
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
+...........+..+...++-+.|.+.++.++...... .....+..++.++....+++.|.........
T Consensus 275 ---d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 275 ---DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE------ASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred ---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 122222334455788888888899999999998832222 1234556788999999999999887766554
No 89
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.26 E-value=2.1e-09 Score=84.84 Aligned_cols=175 Identities=19% Similarity=0.123 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
....++..|...+..|++.+|+..|++.+.. -|.++....+...+|.++...|++++|+..+++.+... |
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 3567889999999999999999999999987 45677788999999999999999999999999999886 6
Q ss_pred CChhHHHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQG-----------KENDSEALFLESIRILEENGEGDS---------MTCIRRLRYLAQTYVK 303 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~la~~~~~ 303 (377)
+++....+++.+|.++.... ...+|+..++..++..++..-... ...+.--..+|..|.+
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888889999998876543 234677788877776554321100 1112233557899999
Q ss_pred hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 017109 304 ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 304 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 353 (377)
.|.+..|+..++.+++.. ++.+....++..++..|...|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999876 334667889999999999999998554
No 90
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.5e-10 Score=91.86 Aligned_cols=124 Identities=22% Similarity=0.238 Sum_probs=109.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....++.+..-|.-.+..++|.+|+..|.+|+++ +|..+..|.+.+.+|.++|.++.|++-++.++.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4556778888999999999999999999999998 8888999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN 266 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (377)
++....+|..||.+|..+|++++|++.|++++++. |.......+|..+-...++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD--------PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC--------CCcHHHHHHHHHHHHHhcCCC
Confidence 77788999999999999999999999999999994 555566667766666666555
No 91
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.25 E-value=1.4e-08 Score=82.16 Aligned_cols=180 Identities=11% Similarity=-0.039 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.....+..|..+...|++++|+..|++++.. .|..+....+...+|.++...+++++|+..+++.++.. |
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 4556778899999999999999999999987 45667777888999999999999999999999999985 7
Q ss_pred CChhHHHHHHHHHHHHHHcC---------------C---hhhHHHHHHHHHHHHHHcCCCCC---------HHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQG---------------K---ENDSEALFLESIRILEENGEGDS---------MTCIRRLRY 296 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~ 296 (377)
+++....+++.+|.++...+ + ..+|+..+++.++.+++..-... ...+.--..
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999998865443 1 23566777777766443321000 111222346
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
+|..|.+.|.+..|+.-++.+++... +.+...+++..+...|...|..++|..+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 78899999999999999999998763 3466789999999999999999999887654
No 92
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.25 E-value=9.3e-09 Score=83.15 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...++..|..+...|++++|+..|++.+... +..+....+...+|.++...+++++|+..+++.++. .|+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcC
Confidence 4557788999999999999999999998863 455677788899999999999999999999999998 677
Q ss_pred chhHHHHHHHHHHHHHHcc---------------C---HHHHHHHHHHHHHHHHHhcCCCChhH--------------HH
Q 017109 203 DIRIGVAFHNLGQFYLVQR---------------K---LEDACTYYERALKIKGRVLGHGNIDY--------------AD 250 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~--------------~~ 250 (377)
++....+++.+|.++...+ + ..+|+..+++.++.. |+++.. +.
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 8888899999998864443 2 245667777776664 222221 22
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
--...|..|.+.|.+..|+.-++.+++-.+ +.+....++..++..|...|..++|......
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 234568889999999999999999988643 4567778899999999999999998876653
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=4e-09 Score=93.77 Aligned_cols=243 Identities=16% Similarity=0.119 Sum_probs=164.7
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|........ ..-.+...++...|.++...|++++|...|...++. +|.....+..+..
T Consensus 16 e~g~~~~AL~~L~~~~-------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------NPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNE-------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------NPDNYDYYRGLEE 80 (517)
T ss_pred HCCCHHHHHHHHHhhh-------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHH
Confidence 3577777766664322 233456678889999999999999999999999976 4554444444444
Q ss_pred HHHHhc-----CHhHHHHHHHHHHHH------------------------------------------------------
Q 017109 174 LYRVKK-----AFDKAEPLYLEAIKI------------------------------------------------------ 194 (377)
Q Consensus 174 ~~~~~g-----~~~~A~~~~~~al~~------------------------------------------------------ 194 (377)
+..... +.+.-...|++....
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 442221 122222222221110
Q ss_pred ---------HHHh-----c-------CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 195 ---------LQES-----F-------GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 195 ---------~~~~-----~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
.... . ........++++.+|..|...|++++|+++++++++.. |..+..+.
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~~ely~ 232 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTLVELYM 232 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHH
Confidence 0000 0 00112245788899999999999999999999999884 77788999
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh---
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL--- 330 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--- 330 (377)
..|.++...|++.+|...++.+..+-.. + -.+-...+..+++.|+.++|.+.+......-. ....+.
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~-------D-RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~m 302 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLA-------D-RYINSKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDM 302 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChh-------h-HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHH
Confidence 9999999999999999999999876221 1 12234567778889999999887765532211 111111
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 369 (377)
+........|.+|.++|++..|++.|..+.+++..+...
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED 341 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 234445567999999999999999999999998887553
No 94
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.24 E-value=4.7e-09 Score=98.69 Aligned_cols=223 Identities=13% Similarity=0.030 Sum_probs=171.4
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
++.++...++....-..+...|++.+++..|+..... ..+.-..+....|..|...+++++|+..|++++.-.
T Consensus 285 p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-------~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 285 PEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-------GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 3344555677777778888999999999999877643 122224477789999999999999999999997642
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-Hh------cCCCChhHHHHHHHHHHHHHHcCChhhH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG-RV------LGHGNIDYADTMYHLATVLYLQGKENDS 268 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (377)
.... ..+........|-..|...+++++|..++++..+... .. ....+++.......++.++...|++.+|
T Consensus 358 ~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 358 GKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred cccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 1110 1121233346788899999999999999999877322 00 1133566778899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC
Q 017109 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS 348 (377)
Q Consensus 269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 348 (377)
++.+++.+.. .|....+...+|.++...|.+.+|+..++.+..+ +|....+...++.++..+|+
T Consensus 436 e~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 436 QKKLEDLSST--------APANQNLRIALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhh
Confidence 9999999875 2333456778999999999999999999887766 35557888999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 017109 349 LMEAQELFERCLEAR 363 (377)
Q Consensus 349 ~~~A~~~~~~al~~~ 363 (377)
+++|....+..++..
T Consensus 500 ~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 500 WHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999998887743
No 95
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=7.9e-10 Score=91.33 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=151.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
|.....-..-+.++...|++++|+..--..+++ ++....++.--|.++...++.+.|+.++++++.+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l----- 232 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL----- 232 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----
Confidence 555566677789999999999999988888877 7788899999999999999999999999999987
Q ss_pred CCCch---------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 200 GPEDI---------RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 200 ~~~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
+|++. .....+..-|.-.++.|++.+|.+.|..++.+... +....+..|.+.+.+....|+..+|+.
T Consensus 233 dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 233 DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhh
Confidence 44443 34455667788889999999999999999998522 223457889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
-.+.++++ ++..+.++...|.++..++++++|.+.|+++++.-
T Consensus 309 dc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 309 DCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999997 56778889999999999999999999999998764
No 96
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.23 E-value=4.6e-10 Score=86.11 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=91.1
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
......++..+|.++...|++++|+..+++++.+ .+++.....++.++|.++...|++++|+.++++++.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--- 102 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--- 102 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 4456888999999999999999999999999987 23444456789999999999999999999999999873
Q ss_pred cCCCChhHHHHHHHHHHHHH-------HcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 241 LGHGNIDYADTMYHLATVLY-------LQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
+.....+.++|.++. ..|++++|+..+.+++..+++..+.++
T Consensus 103 -----~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 103 -----PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred -----cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333344455555555 899999999999998888776644444
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.2e-08 Score=79.16 Aligned_cols=171 Identities=15% Similarity=0.058 Sum_probs=139.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
++.+.++-.+..+....|+.+-|..++++.... .|...++...-|..+...|++++|+++|+..++-
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d----- 115 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED----- 115 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-----
Confidence 446778888888999999999999999887665 3444556667788899999999999999998873
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+|....++-.--.+...+|+.-+|++.+.+-++.+ +....++..++.+|...|+|++|.-++++.+-+
T Consensus 116 ---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~- 183 (289)
T KOG3060|consen 116 ---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI- 183 (289)
T ss_pred ---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-
Confidence 45445666666777788999999999999988887 677899999999999999999999999999875
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhC---ChhHHHHHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKAN---RLTDAETVQRKILHIME 322 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 322 (377)
.|.....+..+|.+++-+| +..-|.++|.+++++..
T Consensus 184 -------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 184 -------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred -------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 3344455677888887766 56679999999999853
No 98
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.22 E-value=5.1e-10 Score=105.86 Aligned_cols=166 Identities=14% Similarity=0.033 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+|+.+...|...|+.++|++.+++..+. +. .|. ..++..+...+...|..++|..+|+...+.. +. .
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~-~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~-~ 459 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAE-----GV-APN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RI-K 459 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CC-C
Confidence 34555555555556666665555554432 10 111 2345555555556666666666665554321 10 0
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
| ....|..+...+.+.|++++|.+.+++. + ..| ...+|..+...+...|+.+.|...+++.+++
T Consensus 460 p-~~~~y~~li~~l~r~G~~~eA~~~~~~~-------~--~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~----- 523 (697)
T PLN03081 460 P-RAMHYACMIELLGREGLLDEAYAMIRRA-------P--FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGM----- 523 (697)
T ss_pred C-CccchHhHHHHHHhcCCHHHHHHHHHHC-------C--CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-----
Confidence 1 1234566666677777777776665432 1 111 1234666677777777777777777766543
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 326 GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 326 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.|.....|..++.+|...|++++|.+.+++..+.
T Consensus 524 ---~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 524 ---GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred ---CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 2333457788999999999999999999887654
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.21 E-value=9.2e-10 Score=81.30 Aligned_cols=112 Identities=17% Similarity=0.118 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH
Q 017109 145 LFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224 (377)
Q Consensus 145 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 224 (377)
.+++++.. +|........+|..+...|++++|...+++++.. + +....++..+|.++..+|+++
T Consensus 5 ~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~---p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 5 TLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----D---PYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----C---CCcHHHHHHHHHHHHHHHHHH
Confidence 45666654 6777788999999999999999999999999886 3 333578999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 225 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
+|..++++++... |.....+..+|.++...|++++|+..++++++..+
T Consensus 69 ~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 69 EAIDAYALAAALD--------PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 9999999998874 55677889999999999999999999999998743
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.21 E-value=2.6e-09 Score=99.49 Aligned_cols=218 Identities=17% Similarity=0.138 Sum_probs=158.4
Q ss_pred cccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 115 VSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+++-.|....++..+...+...|++++|+..++.+++. +|.....++.+|.++...+++.++... .++..
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 44566778899999999999999999999999998877 788899999999999999999888877 55555
Q ss_pred HHHhcC-----------CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 017109 195 LQESFG-----------PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG 263 (377)
Q Consensus 195 ~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (377)
...... .+.+..-.+++.+|.+|..+|+.++|...++++++.. |..+.+++++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-
Confidence 332210 0112223588999999999999999999999999984 77789999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCH----------------H----------------HHHHHHHHHHHHHHhCChhHHH
Q 017109 264 KENDSEALFLESIRILEENGEGDSM----------------T----------------CIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~~~~~----------------~----------------~~~~~~~la~~~~~~g~~~~A~ 311 (377)
++++|+.++.+++...-........ . ....+.-+=..|...+++++++
T Consensus 164 dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999998875433211000 0 0011112225666677777777
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.+++.+++.. +....+...++.+|. +.|.. ...+++.+++
T Consensus 244 ~iLK~iL~~~--------~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 244 YILKKILEHD--------NKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred HHHHHHHhcC--------CcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 7777777763 223456667777776 44433 5555555554
No 101
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.21 E-value=6.8e-10 Score=104.44 Aligned_cols=210 Identities=15% Similarity=0.107 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+.-....|......|.+.+|.+ .-+++.......+.-++..+..+..++.++...|++++|+..-.++.-+.++..+.+
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 4445667778888899999999 888888888777778999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
++.....+.+++......++...|...+.++..+..-..++++|..+.+..+++.++...++++.|+++.+.|....+..
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999988777777899999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 017109 325 KGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQVC 375 (377)
Q Consensus 325 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 375 (377)
.++....+..++..+++++...+++..|....+....++...+|++|+.+.
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~ 1141 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTK 1141 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccch
Confidence 998888899999999999999999999999999999999999999998764
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.21 E-value=1.6e-09 Score=84.54 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=136.9
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+|....+ .+++..+...|+-+.+..+..++... ++........+|......|++.+|+..++++....
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--- 130 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--- 130 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC---
Confidence 5555666 88999999999999999988886654 22223455559999999999999999999999885
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
|....+++.+|.+|.+.|++++|...|.+++++.... ..+..|+|..+.-.|+++.|..++..+...
T Consensus 131 -----p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--------p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 131 -----PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE--------PSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred -----CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC--------chhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7778999999999999999999999999999985432 245789999999999999999999988754
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
. +....+..+++.+...+|++++|.....+
T Consensus 198 ~--------~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 P--------AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred C--------CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 2 22267888999999999999999876543
No 103
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.20 E-value=3.2e-09 Score=79.15 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.+.........++...+...++..+... ++.+....+...+|.++...|++++|...|++++.. .++...
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l 83 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPEL 83 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHH
Confidence 3344444456889998888777776642 445566888999999999999999999999999986 344555
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
...+...++.++...|++++|+..++.. ++.+....+...+|.++...|++++|...|++++
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6678899999999999999999999662 1224556788889999999999999999999874
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=7.5e-10 Score=80.54 Aligned_cols=104 Identities=20% Similarity=0.135 Sum_probs=95.5
Q ss_pred C-HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 161 D-PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 161 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+ +......+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++++|+..|.+++.+.
T Consensus 30 ~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-- 99 (157)
T PRK15363 30 DVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-- 99 (157)
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 5 677888999999999999999999999999987 56667899999999999999999999999999884
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++.+..+.++|.++...|+.+.|.+.|+.++..+.
T Consensus 100 ------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 100 ------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 66678899999999999999999999999999873
No 105
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=3e-09 Score=92.76 Aligned_cols=234 Identities=18% Similarity=0.149 Sum_probs=179.4
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
+..+.|..........+. -.|...+++...|..+...|+-++|..+...++.. ++....+|.-+|
T Consensus 18 yE~kQYkkgLK~~~~iL~-------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~g 82 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHH
Confidence 344555555555555444 23334467788899999999999999999999874 667778999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++....+|++|+++|+.|+.+ ++++ ..++..++.+..++++++.....-.+.++.. +..-..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~-----~~dN---~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w 146 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKI-----EKDN---LQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASW 146 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHH
Confidence 9999999999999999999998 4444 5789999999999999999988888888775 6667788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
...+..+...|++..|...++...+.......+..............+..+.|.+++|.+.+..--... .+.
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--------~Dk 218 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--------VDK 218 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--------HHH
Confidence 999999999999999999999888776533322333445555666777788888888877766543322 222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.......+.++..+++.++|...+...+...+.
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 455667788899999999999999888775443
No 106
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.19 E-value=2e-09 Score=82.58 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=93.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....+..++.+|.++...|++++|+..+++++.+. ++++....++.++|.++...|++++|+.++++++.+....
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 34467889999999999999999999999999872 2334456799999999999999999999999999872211
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
.......+.++..+|..+...|++++|+..+.+++...++..+.+++.
T Consensus 106 -~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 106 -PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred -HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 011122333444444444499999999999999999888776655543
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.19 E-value=6.4e-09 Score=77.52 Aligned_cols=123 Identities=20% Similarity=0.104 Sum_probs=100.2
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 256 (377)
..++...+...+++.++- .++.+....+...+|.++...|++++|...|++++... ++......+...++
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHH
Confidence 578888887777777665 45566677889999999999999999999999998863 33344567888999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 257 TVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
.++...|++++|+..++... +.+........+|.++...|++++|...|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999986521 233455667889999999999999999999874
No 108
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=9.2e-08 Score=73.81 Aligned_cols=227 Identities=16% Similarity=0.127 Sum_probs=168.9
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
.++....+..|..-+..|....+|++|-..+.+|.+..+.. ....+.+.++...+.+......+.++..+++++..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555667888889999999999999999999999877654 2334567889999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
.+...++ .+..-...+--.....++++|+.+|++++.+.+... ........+...++++.+..++++|-..+.+-
T Consensus 102 ~E~Gspd---tAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 102 VECGSPD---TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--RDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHhCCcc---hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 9875433 344445555556678899999999999999986431 12334567778899999999999999988887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 017109 276 IRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQEL 355 (377)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 355 (377)
........ ..+.....+.....+|+...+|..|..+++...++ .+...++...++.+|-..| ..|+.++....
T Consensus 177 ~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 177 GVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred hhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 76665543 22334444555566777788999999999887655 2333445566666665554 46787777655
Q ss_pred H
Q 017109 356 F 356 (377)
Q Consensus 356 ~ 356 (377)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
No 109
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.15 E-value=8.5e-09 Score=90.23 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=177.9
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|..++-..+..+++..-. ..-..+...+..++..|+...|...+.++.+. +|..-.++..--.+
T Consensus 563 hgt~Esl~Allqkav~~~p-------kae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKl 627 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCP-------KAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKL 627 (913)
T ss_pred cCcHHHHHHHHHHHHHhCC-------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHH
Confidence 3455555555555554322 22245666677888889999999999999987 66677778888888
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
.....+++.|..++.++... ++ ...+++.-+.....+++.++|+.+++++++.+ |.....+..
T Consensus 628 e~en~e~eraR~llakar~~-----sg----TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lm 690 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI-----SG----TERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLM 690 (913)
T ss_pred hhccccHHHHHHHHHHHhcc-----CC----cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHH
Confidence 88899999999999998774 22 24678888889999999999999999999997 788889999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVI 334 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 334 (377)
+|.++..+++.+.|.+.|...++.++ ...-.+..++.+-...|+...|...++++.-. +|....
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~cP--------~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~ 754 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKKCP--------NSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNAL 754 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccCC--------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcch
Confidence 99999999999999999998887643 33445778999999999999999999987643 355567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 335 AAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 335 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.+....++-.+.|+.+.|...+.+|++-+++
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 7777788889999999999999999986554
No 110
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.5e-08 Score=83.91 Aligned_cols=198 Identities=13% Similarity=0.018 Sum_probs=116.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
..+...+..++...|...+--+-.. ..-+.....+..+|.++...|++++|+..|+++.-+ +|...
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~------~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i 266 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDN------TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNV 266 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhh------ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------Chhhh
Confidence 3344444455554444443322222 224667788899999999999999999999998876 44455
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
..+-..|.++...|+++.-.......+.+. .....-++.-+.+.+..+++..|+.+-+++++.-
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-------- 330 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV--------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-------- 330 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh--------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--------
Confidence 566666666666666666555555544442 1223334444555555566666666666666541
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
+.....+...|.++...|++++|.-.|+.+..+. |...++|..|..+|...|++.+|...-..++...
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 1222334455666666666666666666665553 3335566666666666666666665555555443
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.14 E-value=3.3e-09 Score=78.30 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|........+|..+...|++++|...+++++.. +|....++..+|.++...|++++|..+++++++.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3445577899999999999999999999999886 6677889999999999999999999999999887
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
. +.....+..+|.++...|++++|+..++++++..
T Consensus 81 -~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 -D---PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -C---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 3335788999999999999999999999999885
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=1.9e-09 Score=95.29 Aligned_cols=221 Identities=16% Similarity=0.149 Sum_probs=165.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-----CCCCCHhHHHHH------HHHHHHHHHhcCHhHHHHHH
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG-----FGERDPHVASAC------NNLAELYRVKKAFDKAEPLY 188 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~------~~la~~~~~~g~~~~A~~~~ 188 (377)
|..+.....++..+...|-..+|+..+++.--....+ .|..+ ...... -.....|...|++-.--.+|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~-kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHG-KAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccc-hHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 4456677788899999999888888887754321111 01000 000000 01234566667776677777
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhH
Q 017109 189 LEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS 268 (377)
Q Consensus 189 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (377)
+++.++.+.. .+.+...+|......++|+++.++++.++++. |.....++.+|.+..+.++++.|
T Consensus 474 EkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--------plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 474 EKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN--------PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC--------ccchhHHHhccHHHHHHhhhHHH
Confidence 7877774432 24466777777778899999999999999985 77888999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC
Q 017109 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS 348 (377)
Q Consensus 269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 348 (377)
.+.|..++.+ .|....++++++..|...|+-.+|...+.++++... .+ ..++.+.-.+..+.|.
T Consensus 539 v~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-----~~---w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 539 VKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-----QH---WQIWENYMLVSVDVGE 602 (777)
T ss_pred HHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-----CC---Ceeeechhhhhhhccc
Confidence 9999999986 445567899999999999999999999999998631 12 4566777778899999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 349 LMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 349 ~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
+++|++.+.+.+.+...-..+.++
T Consensus 603 ~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred HHHHHHHHHHHHHhhhhcccchhh
Confidence 999999999999988776655554
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.12 E-value=5.2e-09 Score=95.57 Aligned_cols=217 Identities=17% Similarity=0.121 Sum_probs=170.7
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
+..+.++..+|.+|....+...|..+|.+|.++ ++..+.+...++..|....+++.|....-.+-+...
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~--- 557 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP--- 557 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch---
Confidence 445677888888888888888898999888887 677788888888888888888888887444333211
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.......+..+|..|...+++..|+..++.++... |....++..+|.+|...|++..|++.|.++..+
T Consensus 558 ---a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 558 ---AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred ---HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 11223445568999999999999999999998874 778899999999999999999999999999886
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
.|......+..+.+....|+|.+|+..+...+....... ......++++..++..+...|=..+|..+++++
T Consensus 626 -------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 626 -------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred -------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 334445567788999999999999999998887653321 111234788888888888899999999999999
Q ss_pred HHHHHhhC
Q 017109 360 LEARKKLM 367 (377)
Q Consensus 360 l~~~~~~~ 367 (377)
++...-..
T Consensus 698 ie~f~~~l 705 (1238)
T KOG1127|consen 698 IESFIVSL 705 (1238)
T ss_pred HHHHHHHH
Confidence 88766544
No 114
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.12 E-value=7.1e-08 Score=79.76 Aligned_cols=242 Identities=12% Similarity=0.084 Sum_probs=175.2
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|+|..|+.+..+.-+.. +...-.+..-+......|+++.+-.++.++-+. .+ .....+....+
T Consensus 95 l~eG~~~qAEkl~~rnae~~-------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~------~~-~~~l~v~ltra 160 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHG-------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL------AG-DDTLAVELTRA 160 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcC-------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc------CC-CchHHHHHHHH
Confidence 45799999988888754332 223345666678888999999999999998876 22 23455677889
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------------
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI---------------- 236 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 236 (377)
.+....|+++.|.....++++. .|.+ ..+......+|...|++.+...++.+..+.
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~-----~pr~---~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEM-----TPRH---PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHh-----CcCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 9999999999999999999887 3444 467777888999999998887776543321
Q ss_pred ---HHHhcCCC-C--------------hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH---------HHcCCC----
Q 017109 237 ---KGRVLGHG-N--------------IDYADTMYHLATVLYLQGKENDSEALFLESIRIL---------EENGEG---- 285 (377)
Q Consensus 237 ---~~~~~~~~-~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~---- 285 (377)
.++...+. . ...+.....++.-+...|+.++|.+..+++++.. +...+.
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~ 312 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEP 312 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchH
Confidence 01110000 0 0113445567778889999999999998887641 111111
Q ss_pred ----------CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 017109 286 ----------DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQEL 355 (377)
Q Consensus 286 ----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 355 (377)
.++.....+..||.++.+.+.+.+|..+++.+++.. .....+..+|.++.+.|+..+|.+.
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR---------PSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHH
Confidence 112233567889999999999999999999888763 2267888999999999999999999
Q ss_pred HHHHHHHHHh
Q 017109 356 FERCLEARKK 365 (377)
Q Consensus 356 ~~~al~~~~~ 365 (377)
+++++....+
T Consensus 384 r~e~L~~~~~ 393 (400)
T COG3071 384 RREALLLTRQ 393 (400)
T ss_pred HHHHHHHhcC
Confidence 9999955433
No 115
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.12 E-value=4e-09 Score=99.39 Aligned_cols=217 Identities=18% Similarity=0.158 Sum_probs=197.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+.-....|......|.+.+|.+ .-+++.......+.-++..+..+..++.++...|+.++|+.+..++.-+.++..+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 344556677888888999999999 8888888888878889999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.+++.....+.+++......++...|...+.++..+..-..++++|..+....+++.++...++++.|+.+.+.|.+..+
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887778889999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEG 338 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 338 (377)
...++........+..+++++...+++..|....+....++....|.+|..+......
T Consensus 1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~ 1146 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEW 1146 (1236)
T ss_pred hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHH
Confidence 8888888888889999999999999999999999999999999999988765554433
No 116
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.12 E-value=7.2e-09 Score=79.77 Aligned_cols=110 Identities=18% Similarity=0.283 Sum_probs=86.5
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 159 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
...+..+.+++.+|..+...|++++|+.+++++++.. ++.+....++..+|.++...|++++|+.++++++...
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 102 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN- 102 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3456778899999999999999999999999999873 2333346789999999999999999999999999874
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCC-------hhhHHHHHHHHHHHHHH
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGK-------ENDSEALFLESIRILEE 281 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~ 281 (377)
|.....+..+|.++...|+ +++|+..++++++...+
T Consensus 103 -------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 103 -------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred -------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 5556677788888887665 45555555555554443
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.5e-08 Score=86.27 Aligned_cols=209 Identities=15% Similarity=0.049 Sum_probs=149.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
++.--..+...|+|++|.....+.+.. .|....+...--.+....++|++|+...+.-... ..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~--------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---------~~ 77 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSI--------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---------LV 77 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhc--------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---------hh
Confidence 333344567789999999999998876 3555566667777888899999988554433221 11
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH------
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL------ 279 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 279 (377)
.....+.-+.|.++.++.++|+..++- . . +....+....|.+++++|+|++|...|+...+-.
T Consensus 78 ~~~~~fEKAYc~Yrlnk~Dealk~~~~----~----~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 78 INSFFFEKAYCEYRLNKLDEALKTLKG----L----D---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred cchhhHHHHHHHHHcccHHHHHHHHhc----c----c---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 112226889999999999999998871 1 1 2223466777899999999999999998764320
Q ss_pred -----------------HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh-------hHHHH
Q 017109 280 -----------------EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL-------DTVIA 335 (377)
Q Consensus 280 -----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~ 335 (377)
.+............+++.|.++...|+|.+|++.++.++.++++....++. +...+
T Consensus 147 ~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 147 ERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 001111122345667899999999999999999999998887765433221 24567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
...++-++..+|+.++|...|...+..
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 778999999999999999999888774
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.10 E-value=2.8e-09 Score=99.28 Aligned_cols=129 Identities=18% Similarity=0.112 Sum_probs=102.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC-----------CC
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG-----------ER 160 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~ 160 (377)
+...++++++...+...+. .+|.....++.+|.++.+.++++++... .++........ .+
T Consensus 41 ~~~~~~~deai~i~~~~l~-------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 41 YKSENLTDEAKDICEEHLK-------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred HHhcCCHHHHHHHHHHHHH-------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHh
Confidence 3467888888888886664 4456678899999999999998888776 66555322200 11
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
.+..-.+++.+|.||..+|+.++|...+++++++ ++..+.+++++|..|... +.++|+.++.+|+...-
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 2333468999999999999999999999999998 345568999999999999 99999999999998764
No 119
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.10 E-value=1.1e-08 Score=89.56 Aligned_cols=208 Identities=16% Similarity=0.087 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
+.++|+.-+.+...+++.++|+.+++++++. .|.....+..+|.++.++++.+.|.+.|...++.+
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c------ 715 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC------ 715 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC------
Confidence 4577888888888899999999999999987 67888899999999999999999999998888763
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|.....+..++.+-...|..-.|...++++.-. +|.....+......-.+.|..+.|.....++++-++.
T Consensus 716 --P~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 716 --PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred --CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 333467888888888999999999998887644 2666777888888899999999999999999987665
Q ss_pred cCCC-----------CC-----------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 017109 282 NGEG-----------DS-----------MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGL 339 (377)
Q Consensus 282 ~~~~-----------~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 339 (377)
.+.- .. .....++..+|.++....+++.|.++|.+++++. ++...++..+
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--------~d~GD~wa~f 857 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--------PDNGDAWAWF 857 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--------CccchHHHHH
Confidence 4420 00 0112345678889999999999999999999874 4456777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 017109 340 ALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 340 a~~~~~~g~~~~A~~~~~~al~ 361 (377)
-..+...|.-++-.+.+.++..
T Consensus 858 ykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhc
Confidence 7888888988777777777655
No 120
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=5.6e-08 Score=86.58 Aligned_cols=215 Identities=20% Similarity=0.129 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
+++.....++...|++++|++++++.... -.+....+...|.++..+|++++|...|...++. +|++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----NPdn 71 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----NPDN 71 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc
Confidence 56677788899999999999999876654 4567788899999999999999999999999987 4444
Q ss_pred hhHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHHHHHhcCC--------C----------------ChhHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQR-----KLEDACTYYERALKIKGRVLGH--------G----------------NIDYADTMYH 254 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~--------~----------------~~~~~~~~~~ 254 (377)
...+..+..+..... +.+.-..+|++......+...+ . ...++....+
T Consensus 72 ---~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~ 148 (517)
T PF12569_consen 72 ---YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSN 148 (517)
T ss_pred ---HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344555555542222 3444455555443332111000 0 0011223333
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGE---------GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
+-.+|....+..-....+..........+. ..+....++++.+|..|...|++++|+++++++++..
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht---- 224 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT---- 224 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----
Confidence 333443222222222222222222211111 1122346778899999999999999999999999873
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 326 GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 326 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
|..++.+...|+++...|++.+|...++.+..+
T Consensus 225 ----Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 225 ----PTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred ----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 666899999999999999999999999988764
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=6.7e-09 Score=82.72 Aligned_cols=124 Identities=23% Similarity=0.220 Sum_probs=103.2
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
....+..+..-|.-.+..++|.+|+..|.+|+++ +|..+..|.+.+.+|.+.|.++.|++-++.++.+-
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--- 145 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--- 145 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---
Confidence 3456777888899999999999999999999998 44446889999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChh
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLT 308 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (377)
|....+|..||.+|..+|++.+|++.|++++++. ++.. ....+|..+-..+++..
T Consensus 146 -----p~yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~Ne---~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 146 -----PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PDNE---SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -----hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CCcH---HHHHHHHHHHHHhcCCC
Confidence 8889999999999999999999999999999982 2222 33455555555555544
No 122
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.09 E-value=7.4e-09 Score=74.60 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+++.+|..+...|++++|+..+.+++.. .++++....+++.+|.++...|++++|+.++++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 56789999999999999999999999876 34555556789999999999999999999999999874 444
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+....++..+|.++...|++++|+.+++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5556789999999999999999999999999874
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.08 E-value=6e-09 Score=75.05 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
++++.+|..+...|++++|+..+.+++... ++++....+++.+|.++...|++++|+.++++++.. .|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 578899999999999999999999998752 334455788999999999999999999999999987 3455
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+....++..+|.++...|++++|..+++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5556789999999999999999999999999884
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.08 E-value=1.8e-08 Score=77.62 Aligned_cols=111 Identities=18% Similarity=0.247 Sum_probs=86.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..+..+..++.+|..+...|++++|+.+|+++++... +.+....++..+|.++...|++++|+..+++++..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 5666788999999999999999999999999998732 23335678999999999999999999999999997
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHHHHhc
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRK-------LEDACTYYERALKIKGRVL 241 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~ 241 (377)
.+.....+..+|.++...|+ +++|+..++++++...+..
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 22234566777888777655 5566666666666554443
No 125
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=8.1e-08 Score=85.75 Aligned_cols=250 Identities=18% Similarity=0.082 Sum_probs=162.5
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHc----CC-------HHHHHHHHHHHHHHHHhhCCCCCH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQ----GK-------LAEAEKLFLSALQEAKEGFGERDP 162 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~-------~~~A~~~~~~al~~~~~~~~~~~~ 162 (377)
+.+.++++.....+++.... +.........+..+|.+|-.+ .. ..+++..+++|++. ++
T Consensus 406 ~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~ 475 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DP 475 (799)
T ss_pred chhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CC
Confidence 46777888888888887542 122333456777777777443 22 34566666666655 45
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
....+.+.++.-|..+++.+.|..+.++++++. ......++..++.++..++++.+|+.....+++-.....+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 556889999999999999999999999999982 2223678999999999999999999999999887643111
Q ss_pred CCC-----------hh-HHH-HHHH----------------------HHHHHHHcCChhhHHHHHHHHHHHHHHcC----
Q 017109 243 HGN-----------ID-YAD-TMYH----------------------LATVLYLQGKENDSEALFLESIRILEENG---- 283 (377)
Q Consensus 243 ~~~-----------~~-~~~-~~~~----------------------la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 283 (377)
-.+ +. ... +... .+.+....++..+|.....++........
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 000 00 000 0000 01111122334444444444443322110
Q ss_pred ------------CCCC--HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCH
Q 017109 284 ------------EGDS--MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSL 349 (377)
Q Consensus 284 ------------~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 349 (377)
++++ ......+...+..+...++.++|..++.++-.+. +.....++..|.++..+|+.
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHHHHHhh
Confidence 0111 1123345567788888888888888888887774 55578888889999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCc
Q 017109 350 MEAQELFERCLEARKKLMPQDHIQ 373 (377)
Q Consensus 350 ~~A~~~~~~al~~~~~~~~~~~~~ 373 (377)
++|...|..++. .+|+|+.
T Consensus 701 ~EA~~af~~Al~-----ldP~hv~ 719 (799)
T KOG4162|consen 701 EEAKEAFLVALA-----LDPDHVP 719 (799)
T ss_pred HHHHHHHHHHHh-----cCCCCcH
Confidence 999999988888 5566654
No 126
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=3.5e-08 Score=86.37 Aligned_cols=203 Identities=14% Similarity=0.074 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..++..+.-.+..++|.+.++..+..++- .|...+++...|..+..+|+-++|..+...++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 34556666677889999999999988874 6677788889999999999999999999999885 3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
+....+|..+|.++....+|++|+++|+.|+.+. ++...++..++.+-.++++++-....-.+.++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----- 138 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----- 138 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----
Confidence 4445799999999999999999999999999984 666788999999999999999888888887775
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.+..-..|...+..+...|++..|....+...................+......+..+.|..++|.+.+..
T Consensus 139 ---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 139 ---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 334445678889999999999999999988877765333333444566666777888888998888776644
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=2.1e-07 Score=72.34 Aligned_cols=194 Identities=17% Similarity=0.102 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
.+.++-+++....+...... .-.++....+-....+....|+.+-|..++.+....+ |.++ .+...-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S~---RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-----PGSK---RVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCCh---hHHHHHHHH
Confidence 35566666666666554433 1234566677788888889999999999988876653 2333 456667889
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 296 (377)
+...|++++|+++|+..++- +|....++-.--.+...+|+.-+|++.+.+-++.+.. ...+|..
T Consensus 96 lEa~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~--------D~EAW~e 159 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN--------DQEAWHE 159 (289)
T ss_pred HHHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC--------cHHHHHH
Confidence 99999999999999987654 2555556666666778889999999999988887542 2467899
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q 017109 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG---SLMEAQELFERCLEARK 364 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 364 (377)
++.+|...|++++|.-++++.+-+ .|........+|+++.-+| +..-|.++|.+++++.+
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999876 2555677788888887776 56789999999999876
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.03 E-value=6.7e-09 Score=89.31 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
+...|..++..|++++|+..|.++++. .|....++.++|.++...|++++|+..+++++.+ . +.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~---P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL-----D---PS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---cC
Confidence 456688899999999999999999987 6777889999999999999999999999999998 3 33
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLY 260 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 260 (377)
...+++.+|.++...|++++|+..|++++.+. |....+...++.+..
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--------P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA--------PGDSRFTKLIKECDE 115 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999984 333444555555543
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=4e-08 Score=78.14 Aligned_cols=196 Identities=16% Similarity=0.063 Sum_probs=147.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
....+|..|++++..-.+. .|.....+..+|.||+...+|..|..+|++.-.. .|.........
T Consensus 21 I~d~ry~DaI~~l~s~~Er--------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER--------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 5667888888887766554 5666778889999999999999999999998776 56666777788
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
+..++..+.+..|+.......+. ......+...-+.+....+++..+..+.++.- + ...+..
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~--------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp-------~---en~Ad~ 146 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN--------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP-------S---ENEADG 146 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC--------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc-------C---CCccch
Confidence 99999999999998877654332 12234455556677778888888777665421 1 123445
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCc
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQ 373 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 373 (377)
..+.|.+..+.|++++|.+-|+.+++.. ... .-.-++++.++...|+++.|+++..+.++.-- .+||+
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvs-----Gyq---pllAYniALaHy~~~qyasALk~iSEIieRG~----r~HPE 214 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVS-----GYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGI----RQHPE 214 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhc-----CCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh----hcCCc
Confidence 7789999999999999999999998873 112 34567899999999999999999998887432 36777
Q ss_pred cc
Q 017109 374 VC 375 (377)
Q Consensus 374 ~a 375 (377)
..
T Consensus 215 lg 216 (459)
T KOG4340|consen 215 LG 216 (459)
T ss_pred cC
Confidence 54
No 130
>PLN03077 Protein ECB2; Provisional
Probab=99.00 E-value=4.3e-08 Score=95.20 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=106.0
Q ss_pred hcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 91 ESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
.....|+++++.......+..... ....++..+...|.+.|++++|.+.|++..+ ....++..
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~------~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~~~ 460 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLI------SYVVVANALIEMYSKCKCIDKALEVFHNIPE-----------KDVISWTS 460 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCC------cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------CCeeeHHH
Confidence 344456666666665555443221 1124455566666666666666666654321 11234555
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH-------------------------------HHHHHHHHHHHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI-------------------------------GVAFHNLGQFYLV 219 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~la~~~~~ 219 (377)
+...|...|++++|+..|++.... ..|+.... ..+++.+-..|.+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 555555666666666666555421 11111100 0112233345555
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 017109 220 QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQ 299 (377)
Q Consensus 220 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 299 (377)
.|+.++|...|++. .....+|+.+...|...|+.++|+++|++..+. ...++. .++..+-.
T Consensus 537 ~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~----~T~~~ll~ 597 (857)
T PLN03077 537 CGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES---GVNPDE----VTFISLLC 597 (857)
T ss_pred cCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCc----ccHHHHHH
Confidence 55555555554432 011234555566666666666666666654432 001111 12333444
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.+...|+.++|.++|+...+... . .| ....+..+..++.+.|++++|.+.+++
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~g----i-~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYS----I-TP-NLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhC----C-CC-chHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55556666666666655543210 0 11 134555566666666666666655554
No 131
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.3e-06 Score=67.70 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=148.6
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 159 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
++....+..|..-+.+|....+|++|...+.++.+..+... .....+.++-..+.+......+.++..+++++...+.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45556677888889999999999999999999998877643 3445577889999999999999999999999999998
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
+.+.+ +.+..-...+-=..+..++++|+.+|++++.+.+... ........+...++++....++++|-..+.+-.
T Consensus 103 E~Gsp---dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 103 ECGSP---DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HhCCc---chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 77554 3343444445555677899999999999999988754 333445567778999999999999988888776
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.+.........+ ...+.....+|.-..++..|..+++...+
T Consensus 178 ~~~~~~~~y~~~--~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 178 VAADKCDAYNSQ--CKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hHHHHHhhcccH--HHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 666554433333 44555555666777799999988877543
No 132
>PLN03077 Protein ECB2; Provisional
Probab=99.00 E-value=5.1e-08 Score=94.70 Aligned_cols=221 Identities=15% Similarity=0.069 Sum_probs=118.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|++++|..++.+... + ...+|+.+-..|...|++++|+..|.+.... .-.| ...++..+
T Consensus 232 y~k~g~~~~A~~lf~~m~~---------~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~------g~~P-d~~ty~~l 294 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR---------R-DCISWNAMISGYFENGECLEGLELFFTMREL------SVDP-DLMTITSV 294 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC---------C-CcchhHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-ChhHHHHH
Confidence 3446777777777765431 1 1245777888888888888888888887653 1111 12233333
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH-------------------------------HHHHHHHHHHc
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA-------------------------------FHNLGQFYLVQ 220 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------------------------------~~~la~~~~~~ 220 (377)
...+...|+.+.|.+.+..+.+. + ......+ |+.+...|.+.
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~-----g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKT-----G--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHh-----C--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 34444444444444444444332 1 0001234 44444444445
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 221 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
|++++|++.|++..+.. .. |+ ...+..+-..+...|++++|.+.+..+.+. + ......++..+...
T Consensus 368 g~~~~A~~lf~~M~~~g---~~---Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~----g---~~~~~~~~n~Li~~ 433 (857)
T PLN03077 368 GLPDKALETYALMEQDN---VS---PD-EITIASVLSACACLGDLDVGVKLHELAERK----G---LISYVVVANALIEM 433 (857)
T ss_pred CCHHHHHHHHHHHHHhC---CC---CC-ceeHHHHHHHHhccchHHHHHHHHHHHHHh----C---CCcchHHHHHHHHH
Confidence 55555544444432220 00 11 112223333444455555555554444332 1 11123345667777
Q ss_pred HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 301 YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
|.+.|++++|.+.|++..+ + ...++..+...|...|+.++|...|++...
T Consensus 434 y~k~g~~~~A~~vf~~m~~-------~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE-------K----DVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888888877775421 1 134667777888888888888888888763
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.99 E-value=9.3e-08 Score=87.70 Aligned_cols=191 Identities=17% Similarity=0.100 Sum_probs=158.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
.+...|...+-+++.+ ++..+.++..||.+|....+...|..+|.+|.++ ++..+.+.-..+..
T Consensus 472 K~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adt 535 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADT 535 (1238)
T ss_pred hhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHH
Confidence 4577888888888887 7889999999999999999999999999999998 45556788889999
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 296 (377)
|....+++.|....-.+-+.... ......+..+|..|...+++..|+..++.++.. +|.....+..
T Consensus 536 yae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~g 601 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLG 601 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHH
Confidence 99999999999885444333211 122334555899999999999999999999985 5566678999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 297 LAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
+|.+|...|++..|++.|.++..+. |......+..+.+....|++.+|...+...+.....
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998773 555778888999999999999999999888776543
No 134
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.97 E-value=9.2e-09 Score=68.68 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=67.0
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 256 (377)
.+|++++|+.+++++++... .++ ....+..+|.++...|++++|+..+++ .... +........+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 36899999999999999832 222 345777799999999999999999999 4443 44466777889
Q ss_pred HHHHHcCChhhHHHHHHHH
Q 017109 257 TVLYLQGKENDSEALFLES 275 (377)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~a 275 (377)
.++..+|++++|++.++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 135
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.94 E-value=3.7e-08 Score=69.44 Aligned_cols=102 Identities=23% Similarity=0.175 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+.+.+|.++...|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46789999999999999999999999986 55666667899999999999999999999999998753 332
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+........++.++...|+.++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33556677789999999999999999887764
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=4.8e-07 Score=77.05 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=103.4
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
+....+.+..+..++..|++++|+..+...+.. .|++ .......+.++...++..+|.+.+++++...
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N---~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDN---PYYLELAGDILLEANKAKEAIERLKKALALD---- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----
Confidence 345667788888999999999999999886664 2334 4667778999999999999999999998885
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
|.......++|..+.+.|++.+|+..++..+.- .+.....|..||..|..+|+..+|...+.+.
T Consensus 371 ----P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 371 ----PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred ----CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 555677888999999999999999988887763 3444556788899998888877665554443
No 137
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.93 E-value=4.6e-07 Score=75.08 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+.....-|..-...|+|.+|+....++-+. .+.-..++..-+.+-..+|+++.+-.++.++-+. .+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-----~~ 149 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-----AG 149 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-----CC
Confidence 4455666788888899999999999987654 4445567777788999999999999999998876 22
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH---
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI--- 278 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 278 (377)
++ ........+.+...+|+++.|..-..++.+.. |....+......+|...|++.+...++.+..+.
T Consensus 150 ~~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~--------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 150 DD--TLAVELTRARLLLNRRDYPAARENVDQLLEMT--------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred Cc--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC--------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 22 24677889999999999999999999998884 555667777888999999988887766543321
Q ss_pred ----------------HHHcCCCC-C--------------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh----
Q 017109 279 ----------------LEENGEGD-S--------------MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES---- 323 (377)
Q Consensus 279 ----------------~~~~~~~~-~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---- 323 (377)
..+...++ . .....+...++.-+...|+.++|.+..+++++...+
T Consensus 220 ~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 220 SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH
Confidence 01110000 0 001233455677788899999999999888864211
Q ss_pred -----cc--------------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 324 -----SK--------------GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 324 -----~~--------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.. ...||+.+..+..||.++.+.+.+.+|..+++.+++..++
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 00 1224445688999999999999999999999999885443
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.92 E-value=2.1e-08 Score=66.93 Aligned_cols=84 Identities=25% Similarity=0.250 Sum_probs=66.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLG 214 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 214 (377)
.+|++++|+.+++++++.. +.++ ....+..+|.+++..|++++|+..+++ .+. .+........+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 3689999999999999873 1123 566778899999999999999999999 443 222346667789
Q ss_pred HHHHHccCHHHHHHHHHHH
Q 017109 215 QFYLVQRKLEDACTYYERA 233 (377)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~a 233 (377)
.++..+|++++|+..++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.91 E-value=2.9e-08 Score=85.40 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
+...|...+..|++++|+.+|.+++.. .+++ ..++.++|.++...|++++|+..+++++.+. |.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIELD--------PS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cC
Confidence 456688899999999999999999997 3333 5789999999999999999999999999985 66
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
...+++.+|.++...|++++|+..|++++++
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999987
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=1.2e-07 Score=80.63 Aligned_cols=152 Identities=18% Similarity=0.110 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
....+.+..+..++..|++++|+..++..+.. .|.....+...+.++...++..+|.+.+++++..
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------ 369 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL------ 369 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Confidence 44567888999999999999999999997755 6777788889999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.|.......++|..+...|++.+|+..++..+... |..+..|..|+..|..+|+..+|...
T Consensus 370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--------p~dp~~w~~LAqay~~~g~~~~a~~A--------- 430 (484)
T COG4783 370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--------PEDPNGWDLLAQAYAELGNRAEALLA--------- 430 (484)
T ss_pred --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CCCchHHHHHHHHHHHhCchHHHHHH---------
Confidence 33335788999999999999999999998876653 77788899999999999987766543
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.++.|...|++++|+..+..+.+..
T Consensus 431 ----------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 ----------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ----------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4455666799999999988887664
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.91 E-value=1.3e-08 Score=65.18 Aligned_cols=65 Identities=29% Similarity=0.402 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-AFDKAEPLYLEAIKI 194 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 194 (377)
.+.++..+|.+++..|++++|+..|.++++. +|....++.++|.++..+| ++++|+..+++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999998 7888999999999999999 799999999999987
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.90 E-value=1.2e-07 Score=66.97 Aligned_cols=102 Identities=23% Similarity=0.137 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
++.+.+|..+-..|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++.. .|++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-----~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-----FPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc
Confidence 46789999999999999999999999974 2345667889999999999999999999999999875 2444
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
+........++.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556677789999999999999999877664
No 143
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=1.7e-08 Score=89.48 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=147.7
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|...+|.....+.++.. + ... .|...||+-.=-.+|+++.++.+ ...+.+...+
T Consensus 434 Y~~lg~~~kaeei~~q~lek~-----~---d~~-------lyc~LGDv~~d~s~yEkawElsn-------~~sarA~r~~ 491 (777)
T KOG1128|consen 434 YLLLGQHGKAEEINRQELEKD-----P---DPR-------LYCLLGDVLHDPSLYEKAWELSN-------YISARAQRSL 491 (777)
T ss_pred HHHhcccchHHHHHHHHhcCC-----C---cch-------hHHHhhhhccChHHHHHHHHHhh-------hhhHHHHHhh
Confidence 344566666666666665411 1 223 44455555555667777777742 2345577778
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|......++|+++..+++.++++ .+....+|+.+|.+..+.++++.|.+.|..++... |+...+
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~ea 555 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEA 555 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhh
Confidence 88888899999999999999998 56667899999999999999999999999999885 788899
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
++|++..|...|+-.+|...+.++++.- .....++.|.-.+....|.+++|++.|.+.+.+.+....+.+
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn--------~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~v 625 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCN--------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV 625 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcC--------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence 9999999999999999999999999863 122234667777888999999999999999988766554333
No 144
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=4.3e-06 Score=71.20 Aligned_cols=247 Identities=15% Similarity=0.110 Sum_probs=174.9
Q ss_pred CCChhhhhhhhhhhhccccccccch-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC--CHhHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIH-------TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER--DPHVA 165 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~ 165 (377)
.|-++++.+...++|.....+...+ ......+-.+..+-.-.|++.+|++....+.+.+.+..++. ....+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 3555666666666665543332221 11233455667777888999999999999999887763311 12346
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.....+|......|.++.|+..|..+.+...+. ...+.+..++|.+|...|+-+.- .++++.. ++.+
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~----y~~ld~i----~p~n 434 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDL----YKALDLI----GPLN 434 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHH----HHHHHhc----CCCC
Confidence 677888999999999999999999999885442 33567788999999998874432 3333332 2211
Q ss_pred -------hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 246 -------IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 246 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
.....+++..|...+.++++.||...+.+.+++....+ ....++-.+..++.+....|+..++.+..+-++
T Consensus 435 t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 435 TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 12355677788888999999999999999999874332 344556667789999999999999999999999
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGS--LMEAQELFER 358 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~ 358 (377)
+..++. ++++-.......+-.++...|+ .+...+.+..
T Consensus 513 qlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 513 QLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 998887 4455445566667788888888 5555555544
No 145
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=3.4e-07 Score=72.95 Aligned_cols=206 Identities=14% Similarity=0.040 Sum_probs=148.7
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|.....+..+|.+|+...+|..|-++|++.-.. .|........-+..++..+.+..|+.......+
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D---- 106 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD---- 106 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC----
Confidence 44445567889999999999999999999998776 788888888889999999999999887665543
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+......+...-+-+.+..+++..+....++.- + ...+....+.|.+.++.|++++|.+-|+.+++
T Consensus 107 ----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp-------~---en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 107 ----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP-------S---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ----CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc-------C---CCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 123334455556666777777777665554421 1 23466778889999999999999999999887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC----------CC-----C------hhHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG----------WN-----S------LDTVIAA 336 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~-----~------~~~~~~~ 336 (377)
. +.-.+.. -++++.++...|+++.|+++..+.++.--+... .+ + .....+.
T Consensus 173 v-----sGyqpll---AYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 173 V-----SGYQPLL---AYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred h-----cCCCchh---HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 6 2223333 467889999999999999998888765322210 00 0 1134566
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 017109 337 EGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 337 ~~la~~~~~~g~~~~A~~~~~ 357 (377)
...+.++.+.|+++.|.+.+.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhh
Confidence 677888899999998877654
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.84 E-value=1.9e-07 Score=76.10 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=91.2
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 123 WRVFTDSGRDY-FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 123 ~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
....+..+..+ ...|+|++|+..|+..++.. ++++....+++.+|.+|+..|++++|+..|+++++. .|
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP 211 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YP 211 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CC
Confidence 35566677665 56799999999999999874 445566789999999999999999999999999987 46
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+++....++..+|.++..+|++++|...|+++++..
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 778888999999999999999999999999998875
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.84 E-value=3.5e-08 Score=63.15 Aligned_cols=64 Identities=31% Similarity=0.470 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR-KLEDACTYYERALKI 236 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 236 (377)
+.++..+|.++...|++++|+.+|.+++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 578899999999999999999999999998 4555789999999999999 799999999999987
No 148
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2.4e-06 Score=65.79 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=128.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
+++++|.++|.++-.+ |....+++.|=..|.++-+...+.. +..+.+.+|...+.+
T Consensus 28 ~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~c 83 (288)
T KOG1586|consen 28 NKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANC 83 (288)
T ss_pred cchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHH
Confidence 4666666666666544 3344445555555555555544442 223345556655555
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ-GKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
|.+ +++++|..+++++++++...+.- ...+.-+..+|.+|... .++++|+.+|+++-+.+.... .......++.
T Consensus 84 ykk-~~~~eAv~cL~~aieIyt~~Grf--~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--s~ssANKC~l 158 (288)
T KOG1586|consen 84 YKK-VDPEEAVNCLEKAIEIYTDMGRF--TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--SVSSANKCLL 158 (288)
T ss_pred hhc-cChHHHHHHHHHHHHHHHhhhHH--HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--hhhhHHHHHH
Confidence 544 48889999999999888544321 22344556788888765 899999999999998876542 2223345566
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
..+..-...++|.+|++.|++.....-...-. ....-..+..-|.|+....+.-.+...+++..++.|...
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL-Kys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL-KYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-HhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 77888888999999999999877653222100 011234455667788887888888887777777655543
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.83 E-value=5.5e-08 Score=66.75 Aligned_cols=96 Identities=32% Similarity=0.481 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
+++.+|..+...|++++|+..++++++. .|....++..+|.++...|++++|..++++++.. .+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-----DPDN- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcc-
Confidence 4678999999999999999999999876 3444578899999999999999999999999886 2222
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
..++..+|.++...|++++|..++.+++..
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 267889999999999999999999988765
No 150
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.82 E-value=3.2e-07 Score=74.81 Aligned_cols=105 Identities=21% Similarity=0.223 Sum_probs=91.1
Q ss_pred HHHHHHHHHH-HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 166 SACNNLAELY-RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 166 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
...+..+..+ ...|+|++|+..|++.++. .|+++....+++.+|.+|+..|++++|+..|++++... ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 5556666655 5679999999999999998 45666667899999999999999999999999999885 56
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++....++..+|.++...|++++|...|+++++..+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 688899999999999999999999999999988744
No 151
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=1.2e-08 Score=84.61 Aligned_cols=167 Identities=16% Similarity=0.022 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
.......|.++...|++++|++.+.+. .+ ..+......++..+++++.|.+.++.+.++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~------- 161 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG----------GS---LELLALAVQILLKMNRPDLAEKELKNMQQID------- 161 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT----------TC---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc----------Cc---ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------
Confidence 345566677888888888888777653 11 2445556778889999999988887754431
Q ss_pred ChhHHHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQG--KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIME 322 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 322 (377)
.+...+....+++....| ++.+|...|++..+. .+....+++.++.++..+|++++|.+.+.++++.
T Consensus 162 -eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-- 230 (290)
T PF04733_consen 162 -EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-- 230 (290)
T ss_dssp -CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred -CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence 222233333444544444 688899888885432 1233456778899999999999999998887643
Q ss_pred hccCCCChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhhCCCCCCc
Q 017109 323 SSKGWNSLDTVIAAEGLALTLQSTGSL-MEAQELFERCLEARKKLMPQDHIQ 373 (377)
Q Consensus 323 ~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~ 373 (377)
.+....++.+++.+....|+. +.+.+++.+... ..|+||-
T Consensus 231 ------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~-----~~p~h~~ 271 (290)
T PF04733_consen 231 ------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ-----SNPNHPL 271 (290)
T ss_dssp -------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH-----HTTTSHH
T ss_pred ------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----hCCCChH
Confidence 234467888888888888888 555556665444 2455654
No 152
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=5.6e-06 Score=70.55 Aligned_cols=224 Identities=15% Similarity=0.042 Sum_probs=161.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCC--CHh----HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC--chh
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGER--DPH----VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE--DIR 205 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~ 205 (377)
+..|-+++|.++-.+++...++....+ .+- ....+..+..+-.-.|++.+|++-...+.+.+.+..++- ...
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 456889999999999998877764333 111 234456677788889999999999999999887763321 223
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
.+.+.+.+|......+.++.|+..|..|.+...+. ...+.+..++|.+|...|+-+.-.+.++. +.+....+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s 437 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNS 437 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCc
Confidence 46678889999999999999999999999886432 33566778899999998875433322221 11110000
Q ss_pred --CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 286 --DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 286 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.......+++..|...+.++++.||...+.+.+++.... .....+...+..++.+....|+..++.+...-++++.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 112334566677888889999999999999999986322 1223356778889999999999999999999999988
Q ss_pred HhhC
Q 017109 364 KKLM 367 (377)
Q Consensus 364 ~~~~ 367 (377)
+++.
T Consensus 516 kKi~ 519 (629)
T KOG2300|consen 516 KKIP 519 (629)
T ss_pred hcCC
Confidence 8864
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.78 E-value=7e-08 Score=66.22 Aligned_cols=96 Identities=29% Similarity=0.464 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
++..+|.++...|++++|+..++++++. .+.. ..++..+|.++...|++++|+.++++++... +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL-----DPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 5678999999999999999999999886 2222 3678899999999999999999999998874 3
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
....++..+|.++...|++++|..++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33467889999999999999999999988764
No 154
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=1.7e-06 Score=82.41 Aligned_cols=211 Identities=15% Similarity=0.063 Sum_probs=162.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
.+|...-.|...-....+.++.++|.+.+++|+....-..+...-....++.+|-.. -|.-+.-.+.|++|.+++..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqycd~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYCDA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhcch
Confidence 445556667777777888999999999999999864211111112234444444444 46677778888888887432
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
..++..|..+|...+++++|.++++..++-+ ......|..++..++.+++-+.|...+.+|++
T Consensus 1530 ---------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1530 ---------YTVHLKLLGIYEKSEKNDEADELLRLMLKKF--------GQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred ---------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999887 34567889999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
..++. .........|.+-++.|+.+.+...|+..+... |.....|....+.-...|+.+-+...|+
T Consensus 1593 ~lPk~------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--------PKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1593 SLPKQ------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--------PKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred hcchh------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--------ccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 87653 233445677899999999999999999888763 4457778888888888889888999998
Q ss_pred HHHHH
Q 017109 358 RCLEA 362 (377)
Q Consensus 358 ~al~~ 362 (377)
+++.+
T Consensus 1659 Rvi~l 1663 (1710)
T KOG1070|consen 1659 RVIEL 1663 (1710)
T ss_pred HHHhc
Confidence 88774
No 155
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.8e-07 Score=76.08 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-------hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP-------HVASACNNLAELYRVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 193 (377)
..+......|+.++..|+|..|...|++++.......+.+.. ....++.+++.++..+++|.+|+..+.+++.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 345667778999999999999999999999887644332221 2456889999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhH-HHHH
Q 017109 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS-EALF 272 (377)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~ 272 (377)
. ++++ ..+++..|.++..+|+|+.|+..|++++++. |..-.+...+..+-.+..++.+. .+.|
T Consensus 286 ~-----~~~N---~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 286 L-----DPNN---VKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred c-----CCCc---hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 3333 6899999999999999999999999999995 55556666777766655554433 5666
Q ss_pred HHHHHHH
Q 017109 273 LESIRIL 279 (377)
Q Consensus 273 ~~al~~~ 279 (377)
...+...
T Consensus 350 ~~mF~k~ 356 (397)
T KOG0543|consen 350 ANMFAKL 356 (397)
T ss_pred HHHhhcc
Confidence 6665543
No 156
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.76 E-value=8.4e-06 Score=64.35 Aligned_cols=178 Identities=15% Similarity=0.067 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
-+..+++-|......|++++|...|+..... .|..+..-.+...++..+.+.+++++|+...++-+... +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----P 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C
Confidence 3567888899999999999999999998765 44566667899999999999999999999999999885 6
Q ss_pred CChhHHHHHHHHHHHHHHc-----CChh---hHHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHHHHhCC
Q 017109 244 GNIDYADTMYHLATVLYLQ-----GKEN---DSEALFLESIRILEENGEGDS---------MTCIRRLRYLAQTYVKANR 306 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~la~~~~~~g~ 306 (377)
.|++...+++..|.++... .+.. +|+.-+++.+..++...-... ...+.--..+|..|.+.|.
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788888888888887653 2333 344444554444332211111 0112223557899999999
Q ss_pred hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 307 LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 307 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
+..|...++.+++-.... +....++..+...|..+|-.++|...-
T Consensus 183 ~~AA~nR~~~v~e~y~~t-----~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 183 YVAAINRFEEVLENYPDT-----SAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred hHHHHHHHHHHHhccccc-----cchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999998875433 445788999999999999999986643
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=5.4e-08 Score=61.37 Aligned_cols=60 Identities=27% Similarity=0.373 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+.+|..++..|++++|+..|+++++. .|....++..+|.++..+|++++|+.+++++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999965 7889999999999999999999999999999987
No 158
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=2e-05 Score=68.96 Aligned_cols=233 Identities=14% Similarity=0.140 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-------hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP-------HVASACNNLAELYRVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 193 (377)
...+.+++.+.++...|+|.+|++.+++++.++++.+..++. .+..+...++.++..+|+..+|...|...+.
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 366889999999999999999999999999988876543322 2456778899999999999999999988776
Q ss_pred HHHHhcCCCchh---------------------------------------------HHHHHHHHHHHHHHccCHHHHHH
Q 017109 194 ILQESFGPEDIR---------------------------------------------IGVAFHNLGQFYLVQRKLEDACT 228 (377)
Q Consensus 194 ~~~~~~~~~~~~---------------------------------------------~~~~~~~la~~~~~~g~~~~A~~ 228 (377)
... .|.+. ...++.+.+.+.+..+.-+.+.+
T Consensus 253 ~~~----~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 253 RNP----ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred hcC----CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 411 11111 11223333433333333332222
Q ss_pred H---------------------------HHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 229 Y---------------------------YERALKIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 229 ~---------------------------~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
. ..++.+...... ..+|. ...+...++.+...+|+++.|++.+...+....
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~-~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFA-DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 1 111222222222 22233 356777889999999999999999996553322
Q ss_pred HcCC--CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 281 ENGE--GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 281 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.... ...|.. -..+-.++...++.+.|...+.+++.......... ......+...+.+-.+.|+-++|...+++
T Consensus 408 ss~~~~~~~P~~---V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 408 SSILEAKHLPGT---VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhccChhH---HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 2111 122322 33455677888888999999999999887654432 44556677788888889999999999999
Q ss_pred HHHH
Q 017109 359 CLEA 362 (377)
Q Consensus 359 al~~ 362 (377)
.++.
T Consensus 484 l~k~ 487 (652)
T KOG2376|consen 484 LVKF 487 (652)
T ss_pred HHHh
Confidence 8873
No 159
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.5e-06 Score=65.67 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=110.9
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
+...+.+++|.++|.++-.. |...++++.|-..|.++-+...+.... .+.+..|..
T Consensus 24 fgg~~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~~sk--hDaat~Yve 79 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKAGSK--HDAATTYVE 79 (288)
T ss_pred cCCCcchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHH
Confidence 33345677777776666554 344455566666666666665544322 344566666
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA-NRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.+.+|.+ +++.+|..+++++++++...+ .-...+..+..+|.+|... .++++|+.+|+++-+.+...... ...-
T Consensus 80 A~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~--ssAN 154 (288)
T KOG1586|consen 80 AANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV--SSAN 154 (288)
T ss_pred HHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh--hhHH
Confidence 6666654 489999999999999988876 3334455567889998865 89999999999999987554322 2235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.++...+..-...+++.+|+..|++...
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888899999999999998765
No 160
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.70 E-value=5.1e-06 Score=57.78 Aligned_cols=102 Identities=25% Similarity=0.216 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...+-..|......|+.+.|++.|.+++.+ -|..+.+|++.+..+..+|+.++|+.-+++++++. ++.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 345566788889999999999999999998 67889999999999999999999999999999984 444
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
......++...|.+|..+|+-+.|..-|+.+-++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5566788999999999999999999999998776
No 161
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.69 E-value=5.3e-06 Score=73.13 Aligned_cols=244 Identities=13% Similarity=0.076 Sum_probs=166.9
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|+..+-...+.+++..-.... ..-....++...|..|...|+.+.|...|+++.+.-- +.-.+++.++..-|.
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~k-a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKK-AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAE 433 (835)
T ss_pred hcCChHHHHHHHHHHHHccCccc-CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHH
Confidence 45666666666666665432211 1223357889999999999999999999999987521 113456889999999
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHH----hcCCCch------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQE----SFGPEDI------RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.-....+++.|..+.+.|...-.. ......| ....++...+......|-++.....|++.+++.
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr------ 507 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR------ 507 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh------
Confidence 999999999999999998764211 1111122 123456677777888888999999999998886
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
.-++....|.|..+....-++++.+.|++.+.+++-. ........|......-...-+.+.|..+|++|++.+.
T Consensus 508 --iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p---~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp- 581 (835)
T KOG2047|consen 508 --IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP---NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP- 581 (835)
T ss_pred --cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc---cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-
Confidence 4456677788999999899999999999999875421 2222222233333333334578889999999998642
Q ss_pred ccCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 324 SKGWNSLDT-VIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 324 ~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
|.. -..+...|.+-.+-|-...|+..|+++-
T Consensus 582 ------p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 582 ------PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred ------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 3344455666666677777777776653
No 162
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=4.5e-06 Score=68.40 Aligned_cols=183 Identities=18% Similarity=0.145 Sum_probs=117.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
..+..+|..|..+..-+..... +. --.+...+|.+++..|+|++|...|.-+.+. +...+....++
T Consensus 32 fls~rDytGAislLefk~~~~~----EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vnL 97 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR----EE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVNL 97 (557)
T ss_pred HHhcccchhHHHHHHHhhccch----hh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchhH
Confidence 4456677777776665552221 22 2355667899999999999999999877653 23345677889
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+.+++..|.|.+|.....++ ++.|.....++.++. +.|+-++-.. |.+.+. +...-
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfhlah---klndEk~~~~-fh~~Lq-----------D~~Ed 153 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFHLAH---KLNDEKRILT-FHSSLQ-----------DTLED 153 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHHHHH---HhCcHHHHHH-HHHHHh-----------hhHHH
Confidence 99999999999988776654 345555555555544 3344322222 222211 11233
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...++.++...-.|.+|++.|.+++. +++.....-..+|.||.++.-++-+.+.+.--+..
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 44566677777778888888887776 45555556667788888887777777666655544
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.69 E-value=1.3e-06 Score=78.62 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHh--------HHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFD--------KAEPLYLEA 191 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a 191 (377)
+--++..|..+...++ ..+|+.+|++++++ +|..+.++..++.++.....+. .+.....++
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445566777776655 78999999999998 8888888888888776654333 222222322
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHH
Q 017109 192 IKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEAL 271 (377)
Q Consensus 192 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (377)
+.+ +..+....++..+|......|++++|...+++++++. +. ..++..+|.++...|++++|++.
T Consensus 411 ~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 411 VAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred hhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 221 1122234678888999999999999999999999984 43 67899999999999999999999
Q ss_pred HHHHHHH
Q 017109 272 FLESIRI 278 (377)
Q Consensus 272 ~~~al~~ 278 (377)
|++++.+
T Consensus 476 ~~~A~~L 482 (517)
T PRK10153 476 YSTAFNL 482 (517)
T ss_pred HHHHHhc
Confidence 9999987
No 164
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.6e-06 Score=70.94 Aligned_cols=182 Identities=16% Similarity=0.085 Sum_probs=129.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 017109 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHN 212 (377)
Q Consensus 133 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 212 (377)
+....+|..|+.+++-.+.. +.......-..+|.+++..|+|++|...|.-+..- ++.+ +....+
T Consensus 32 fls~rDytGAislLefk~~~-------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~--~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAP--AELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCC--cccchh
Confidence 45678999999999887754 22333466778999999999999999999877652 1222 567889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 213 LGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 213 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
++.+++..|.|.+|.....++-+ .|.....++.++. +.++-++-.. +...+.- +..
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k---------~pL~~RLlfhlah---klndEk~~~~-fh~~LqD-----------~~E 152 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPK---------TPLCIRLLFHLAH---KLNDEKRILT-FHSSLQD-----------TLE 152 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHH---HhCcHHHHHH-HHHHHhh-----------hHH
Confidence 99999999999999887766532 3555566665543 4455433333 3332221 112
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
-...+|.+....-.|.+|++.|.+++.- +++....-..+|.||.++.-++-+.+.++-.+.
T Consensus 153 dqLSLAsvhYmR~HYQeAIdvYkrvL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 153 DQLSLASVHYMRMHYQEAIDVYKRVLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 2456788888888999999999998864 455567777899999999999988877766655
No 165
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.67 E-value=4.6e-05 Score=70.14 Aligned_cols=258 Identities=14% Similarity=-0.024 Sum_probs=167.2
Q ss_pred ccCCChhhhhhhhhhhhccccc--cccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSV--VSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
.++..++++....-+.-..... .+......+...-..|.+....|++++|+++.+.++....+ ........++..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~r~~~~sv 502 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRSRIVALSV 502 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchhhhhhhhh
Confidence 4567777777766655433322 22233345566667788899999999999999999987433 223445778889
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
+|.+..-.|++++|..+..++.+..++.. .......+....+.++..+|+...|. -.++............+....
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHhhhcccchh
Confidence 99999999999999999999999988762 34455677788899999999333222 222222222111111122112
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
.....+.++...-+++.+..-..+.++........ ..........++.++...|++++|...+.+......... +...
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~-~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~ 656 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQ-PLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVD 656 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccc-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCch
Confidence 22223333333333777777777777765544322 222222336899999999999999999999988876553 2222
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
....++.........+|+.++|.....+.
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 23444445555667889999998887763
No 166
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.67 E-value=1.4e-05 Score=63.15 Aligned_cols=173 Identities=18% Similarity=0.147 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+..++.-|......|++++|...|+...... +..|..-.+...++.+++..+++++|+...++-+.. -|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCC
Confidence 4678899999999999999999999887542 445667889999999999999999999999999998 567
Q ss_pred chhHHHHHHHHHHHHHHc-----cCH---HHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQ-----RKL---EDACTYYERALKIKGRVLGHGNIDY--------------ADTMYHLATVLY 260 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~-----g~~---~~A~~~~~~al~~~~~~~~~~~~~~--------------~~~~~~la~~~~ 260 (377)
++....+++..|.++... .+. .+|..-+++.+..+ |+++.. +.--..+|..|.
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887654 223 34444455544443 222211 122345688999
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 017109 261 LQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQR 315 (377)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (377)
+.|.+..|+..++.+++-.+ +.+..-.++..+..+|..+|-.++|...-.
T Consensus 179 kr~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HhcChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99999999999999988644 344556678889999999999999876543
No 167
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=2.3e-06 Score=65.12 Aligned_cols=103 Identities=18% Similarity=0.109 Sum_probs=90.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
.+...+..++..|..|-..|-+.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--- 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---
Confidence 44567889999999999999999999999999988 8899999999999999999999999999999997
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+.
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 4555678889999999999999998877665443
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=98.67 E-value=5.9e-07 Score=65.93 Aligned_cols=103 Identities=27% Similarity=0.279 Sum_probs=89.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
-++...+..+..|.-++..|++++|..+|+-..-. ++...+.+..||.++..+++|++|+..|..+..+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-- 101 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-- 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 45567788899999999999999999999887765 56667789999999999999999999999998873
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.++| ...+..|.++..+|+.++|...|..+++.
T Consensus 102 ---~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 ---KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ---cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 3343 45788999999999999999999998874
No 169
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.7e-06 Score=72.37 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED-------IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+.....-|+.|+..|+|..|...|++++..+....+.+. .....++.|++.++.++++|.+|+....+++.+-
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 344556789999999999999999999998764332221 1245688999999999999999999999999984
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhH-HHHHHHH
Q 017109 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD-AETVQRK 316 (377)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~ 316 (377)
+....+++..|.++...|+++.|+..|++++++.+. + -.+...+..+-.+..++.+ ..+.|..
T Consensus 288 --------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-----N---ka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 288 --------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-----N---KAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred --------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-----c---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999998332 2 2233445555544444433 3667777
Q ss_pred HHHHH
Q 017109 317 ILHIM 321 (377)
Q Consensus 317 al~~~ 321 (377)
++...
T Consensus 352 mF~k~ 356 (397)
T KOG0543|consen 352 MFAKL 356 (397)
T ss_pred Hhhcc
Confidence 66554
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=1.4e-06 Score=69.31 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.++.|.-++..|+|..|...|..-++.+ ++++....+++.||.+++.+|++++|...|..+.+- -|+++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 7889999999999999999999988764 667788999999999999999999999999999986 456777
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
...+++.+|.+...+|+.++|...++++++.+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 78999999999999999999999999999886
No 171
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=7.4e-07 Score=70.87 Aligned_cols=103 Identities=21% Similarity=0.183 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
.++.|.-++..|+|..|..-|..-++. .|+......++++||.+++.+|++++|...|..+..-. ++++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 788899999999999999999999987 56778888999999999999999999999999998864 66688
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.+.+++.+|.+....|+.++|...++++++.++
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 889999999999999999999999999988744
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.58 E-value=2.8e-07 Score=58.09 Aligned_cols=60 Identities=25% Similarity=0.428 Sum_probs=54.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 211 HNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 211 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+.+|..+...|++++|+..|+++++.. |....++..+|.++..+|++++|+.+|+++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357899999999999999999998774 788999999999999999999999999999987
No 173
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.56 E-value=4.7e-06 Score=57.96 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
..+..-|......|+.+.|++.|.+++.++ |..+.+|++.+..+.-+|+.++|++-+.+++++. ++..
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~t 111 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQT 111 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccc
Confidence 344556788888999999999999999984 3336899999999999999999999999999997 4445
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.....++...|.+|..+|+-+.|..-|+.+-++
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 666788999999999999999999999998776
No 174
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=5.3e-05 Score=64.72 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=166.4
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDY---FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
+.|+.+.-...+.++|...+.........--+|..+-.++ ....+.+.+.+.|+.++++.... .-..+..+..
T Consensus 334 ~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk----kFtFaKiWlm 409 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK----KFTFAKIWLM 409 (677)
T ss_pred hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc----cchHHHHHHH
Confidence 3567777777777777766554333322223333333333 34588999999999999974322 4567888899
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
.|.....+.+...|.+.+-.|+-.+.+ + ...-....+-.+.++++....+|++-++.. |..+.
T Consensus 410 yA~feIRq~~l~~ARkiLG~AIG~cPK-----~----KlFk~YIelElqL~efDRcRkLYEkfle~~--------Pe~c~ 472 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGNAIGKCPK-----D----KLFKGYIELELQLREFDRCRKLYEKFLEFS--------PENCY 472 (677)
T ss_pred HHHHHHHHcccHHHHHHHHHHhccCCc-----h----hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------hHhhH
Confidence 999999999999999999998876432 1 234444556677889999999999998874 88899
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
++...|.+-...|+.+.|...|+-|+..-. -+.|... +......-...|.++.|..+|++.++..+.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmpell--wkaYIdFEi~~~E~ekaR~LYerlL~rt~h------- 539 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPA----LDMPELL--WKAYIDFEIEEGEFEKARALYERLLDRTQH------- 539 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccHHHH--HHHhhhhhhhcchHHHHHHHHHHHHHhccc-------
Confidence 999999999999999999999998886411 1223322 344455566789999999999999876322
Q ss_pred hHHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHHHHHhh
Q 017109 331 DTVIAAEGLALTLQ-----STG-----------SLMEAQELFERCLEARKKL 366 (377)
Q Consensus 331 ~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~~~~~ 366 (377)
..++...|..-. ..+ +...|...|++|....++.
T Consensus 540 --~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 540 --VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred --chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 224444444333 444 5677888888887766653
No 175
>PRK11906 transcriptional regulator; Provisional
Probab=98.56 E-value=6.7e-06 Score=70.59 Aligned_cols=163 Identities=17% Similarity=0.087 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh---------cCHhHHHHHHHHHH
Q 017109 125 VFTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK---------KAFDKAEPLYLEAI 192 (377)
Q Consensus 125 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 192 (377)
-++..|......+. ...|+.+|.+|+... +-+|..+.++..++.++... .+..+|....++++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 34666777666553 567888888888221 12788899999999888765 23456777777777
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHH
Q 017109 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALF 272 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (377)
++ ++.+ +.++..+|.+....++++.|...|++|+.+. |..+.+++..|.+....|+.++|.+.+
T Consensus 332 el-----d~~D---a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI-----TTVD---GKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc-----CCCC---HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 76 3344 5889999999999999999999999999995 888999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-HHHHhCChhHHHHHHHH
Q 017109 273 LESIRILEENGEGDSMTCIRRLRYLAQ-TYVKANRLTDAETVQRK 316 (377)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 316 (377)
++++++ ++.........+-. .|. ....++|+.+|-+
T Consensus 396 ~~alrL-------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQL-------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHHhcc-------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 999987 22222222223322 343 4566777777654
No 176
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.55 E-value=1.5e-05 Score=70.39 Aligned_cols=228 Identities=13% Similarity=0.126 Sum_probs=145.4
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC---------------------------CCCCHhHHHH------
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGF---------------------------GERDPHVASA------ 167 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~~~------ 167 (377)
.....+..||..|...|.+++|...|++++...-... +.+.......
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 3567899999999999999999999999986432110 0000000000
Q ss_pred ---H---------------------HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH
Q 017109 168 ---C---------------------NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL 223 (377)
Q Consensus 168 ---~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 223 (377)
+ ..+-.+-...|+..+-+..|.+|+........+. .....+..+|..|...|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~G--s~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVG--SPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCC--ChhhHHHHHHHHHHhcCcH
Confidence 0 0111222234555666666666665432221111 2356788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH-----cCCCCC-----HHHHHH
Q 017109 224 EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE-----NGEGDS-----MTCIRR 293 (377)
Q Consensus 224 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~-----~~~~~~ 293 (377)
+.|...++++....- +.-.+.+.++...|..-....+++.|+.+.+++...-.. ..+..+ .....+
T Consensus 404 ~~aRvifeka~~V~y----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 404 DDARVIFEKATKVPY----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred HHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 999999999987631 222456888999999999999999999999998754221 111111 122345
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
|...+.+....|-++.-...|++.+++.-. ++....+.|..+..-.-+++|.+.|++.+.+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLria--------TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIA--------TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 666777777788888888888888776422 2445555666666666666666666665543
No 177
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=4.3e-06 Score=71.95 Aligned_cols=120 Identities=21% Similarity=0.174 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
.+-.++...++++.|+.++++..+. +|. +...++.++...++..+|+..+.+++.. .|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence 3445566678999999999987754 343 4556899999999999999999999965 23336
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
..+...+..+...++++.|+...++++... |.....|..|+.+|...|++++|+..++.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 788899999999999999999999999996 88889999999999999999999987764
No 178
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.54 E-value=0.00031 Score=58.56 Aligned_cols=254 Identities=17% Similarity=0.118 Sum_probs=147.7
Q ss_pred ccCCChhhhhhhhhhhhccc-cccccchhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh-h----CCCC-CHhH
Q 017109 93 TSQNDTEGENAFGLRKIEDG-SVVSNIHTSKWRVFTDSGRDYFLQG-KLAEAEKLFLSALQEAKE-G----FGER-DPHV 164 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-~----~~~~-~~~~ 164 (377)
..+|+++.|.....+.-... ...++.....++.+++.|......+ ++++|..+++++.++.+. . ..++ ....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45688888888877776655 3344455667899999999999999 999999999999999755 1 1111 1345
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..++..++.+|...+.++...+ ..++++..++..+ +++. .+..--.+....++.+++.+.+.+++....- .
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~---~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~---~- 154 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPE---VFLLKLEILLKSFDEEEYEEILMRMIRSVDH---S- 154 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcH---HHHHHHHHHhccCChhHHHHHHHHHHHhccc---c-
Confidence 7888999999999988764444 5555555555433 3432 2222222333378899999999988876410 1
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC--ChhHH--HHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKAN--RLTDA--ETVQRKILHI 320 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al~~ 320 (377)
.............+.. .....|...+...+...-... .++ ..... -+..++...+ +.... ++-....+..
T Consensus 155 -e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~-~~~--~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 155 -ESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSS-EDQ--WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred -cchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCC-hhH--HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 1111222222222222 334567777766654322211 111 22111 1222333222 22222 3344444443
Q ss_pred HHhcc-CCCChh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 321 MESSK-GWNSLD----TVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 321 ~~~~~-~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
..... ++-.+. ....+.+.|.-.++.++|++|..+|+-++.
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 22222 222222 224566778889999999999999997763
No 179
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.53 E-value=6e-06 Score=59.33 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...++..|...+..|+|.+|++.++...... +..+....+...++.+|+..|++++|+..+++.+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 4678899999999999999999999887653 445667789999999999999999999999999998 778
Q ss_pred chhHHHHHHHHHHHHHHccC---------------HHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRK---------------LEDACTYYERALKIK 237 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~ 237 (377)
++....+++..|.++..+.. ..+|...|++.+...
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 88888999999999998876 667777777777665
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=5.4e-06 Score=71.36 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.+-..+...++++.|+..+++..+. +| .+...++.++...++..+|+..+.+++... |...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--------~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--------p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--------DP---EVAVLLARVYLLMNEEVEAIRLLNEALKEN--------PQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--------CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--------CCCH
Confidence 3455666678999999998887664 23 245568999999999999999999999653 5557
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
..+...+..+...++++.|+...+++.++ .|.....|..|+.+|...|++++|+..+..
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 88889999999999999999999999997 455667899999999999999999977654
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.50 E-value=1.1e-05 Score=72.76 Aligned_cols=138 Identities=13% Similarity=0.102 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhh----HHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRK---LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEND----SEALFLESIRI 278 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~ 278 (377)
.+.-++..|.-+...++ ..+|+.+|++++++. |..+.++..++.++.....+.. .+....++...
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--------PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34555666766666544 789999999999984 7778888887777765433331 12222222222
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
..... ..+....++..+|..+...|++++|...+++++.+. + ...++..+|.++...|++++|...|++
T Consensus 410 a~al~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 410 IVALP--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hhhcc--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111 112223567778888888999999999999999883 3 267999999999999999999999999
Q ss_pred HHHH
Q 017109 359 CLEA 362 (377)
Q Consensus 359 al~~ 362 (377)
|+.+
T Consensus 479 A~~L 482 (517)
T PRK10153 479 AFNL 482 (517)
T ss_pred HHhc
Confidence 9984
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=5e-06 Score=67.08 Aligned_cols=104 Identities=19% Similarity=0.144 Sum_probs=90.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---CHhHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---AFDKAEPLYLEAIKI 194 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~ 194 (377)
.+|..++-|..+|.+|+..|+++.|...|.+|+++ .+.....+..+|.+++.+. ...++...+++++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 55667788999999999999999999999999998 6677788888888877664 456888999999987
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 195 LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
++....+.+.+|..++.+|+|.+|...++..++..
T Consensus 223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 44446899999999999999999999999998886
No 183
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=0.00018 Score=65.83 Aligned_cols=200 Identities=18% Similarity=0.166 Sum_probs=124.7
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH----HHHHhcCCCch---------hHHHHHHHHHHHHHHccCHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIK----ILQESFGPEDI---------RIGVAFHNLGQFYLVQRKLEDA 226 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~---------~~~~~~~~la~~~~~~g~~~~A 226 (377)
|...+-..|++.+.-+...++.+.|+++|+++-. +.+-.. ++.+ .....|..-|......|+.+.|
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~-e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK-EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH-hChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 4456677899999999999999999999998632 111110 0000 1124677789999999999999
Q ss_pred HHHHHHHHHHHHHh-----cCCC--------ChhHHHHHHHHHHHHHHcCChhhHHHHHHHH------HHHHHHcCCCCC
Q 017109 227 CTYYERALKIKGRV-----LGHG--------NIDYADTMYHLATVLYLQGKENDSEALFLES------IRILEENGEGDS 287 (377)
Q Consensus 227 ~~~~~~al~~~~~~-----~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~ 287 (377)
+.+|..|-+.+... .|.. ......+.+.+|+.|...|++.+|+..|.++ +.++++.+..+.
T Consensus 932 l~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 932 LSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred HHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999887765321 1110 0122356788999999999999999988764 555665542221
Q ss_pred HHHH------HHHHHHHHHHHHhC-ChhHHHHHHHH------------------HHHHHHhccCCCChhHHHHHHHHHHH
Q 017109 288 MTCI------RRLRYLAQTYVKAN-RLTDAETVQRK------------------ILHIMESSKGWNSLDTVIAAEGLALT 342 (377)
Q Consensus 288 ~~~~------~~~~~la~~~~~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~~la~~ 342 (377)
.... .-....|..|...| ..+.|..+|.+ ++++..+...+... +..+..-++.
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD--p~ll~RcadF 1089 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD--PKLLRRCADF 1089 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC--HHHHHHHHHH
Confidence 1100 01122344455554 55555555543 23333333333322 5677778888
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 017109 343 LQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 343 ~~~~g~~~~A~~~~~~al~~ 362 (377)
+....+|++|..++-.+.+.
T Consensus 1090 F~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 99999999998876555443
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.1e-05 Score=65.14 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=89.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR---KLEDACTYYERALKIK 237 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 237 (377)
+|..++-+..||.+|+.+|+++.|..-|.+++++ .++++ ..+..+|.++..+. ...++...+++++..-
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~---~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNP---EILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 6788899999999999999999999999999998 44454 66777777776654 4578999999999883
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
+....+...||..++.+|+|.+|...++..++..+
T Consensus 224 --------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 224 --------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred --------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 77788999999999999999999999999988743
No 185
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.46 E-value=4.6e-07 Score=51.33 Aligned_cols=41 Identities=37% Similarity=0.486 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCc
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQ 373 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 373 (377)
+.++.++|.+|..+|++++|..++++++++.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56889999999999999999999999999999999999996
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.44 E-value=6.5e-05 Score=56.03 Aligned_cols=135 Identities=15% Similarity=0.072 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD 286 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (377)
..-...+|......|++.+|...|++++.-. -......+..++...+..+++..|...+++..+.-+....+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p- 160 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP- 160 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC-
Confidence 3456778999999999999999999987542 12335677888999999999999999998887754322222
Q ss_pred CHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 287 SMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.....+|+.+..+|++.+|...|+.++..... .......+..+..+|+.++|..-+....+..
T Consensus 161 -----d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg---------~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 161 -----DGHLLFARTLAAQGKYADAESAFEVAISYYPG---------PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred -----CchHHHHHHHHhcCCchhHHHHHHHHHHhCCC---------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 22456788999999999999999998876421 3455567788888998888877766655543
No 187
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.44 E-value=1.1e-06 Score=73.05 Aligned_cols=159 Identities=17% Similarity=0.073 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
.+....|.++...|++++|+..+.+. ...++......++..+++++.|.+.++.+.+. ++|.
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~ 164 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DEDS 164 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcH
Confidence 34566678888899999998887653 12345556778999999999999888776543 2222
Q ss_pred hhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQR--KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
..+....+.+....| ++.+|..+|++..+.+ +..+..++.++.++..+|++++|...+++++..
T Consensus 165 ---~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--------~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--- 230 (290)
T PF04733_consen 165 ---ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--------GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--- 230 (290)
T ss_dssp ---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---
T ss_pred ---HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---
Confidence 233344444555555 6899999999854332 345677899999999999999999999998753
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhH-HHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTD-AETVQRKILH 319 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~ 319 (377)
.+....++.+++.+....|+..+ +.+++.+...
T Consensus 231 -----~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 231 -----DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp ------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -----ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 22344567899999999999954 5555555443
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.44 E-value=0.00014 Score=59.15 Aligned_cols=208 Identities=24% Similarity=0.248 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
.......+..+...+++..+...+...... ...+.....+..++..+...+++..+...+.++..... .
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP-----D 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC-----C
Confidence 466778889999999999999999998864 12567788889999999999999999999999887521 1
Q ss_pred chhHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQ-FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 203 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
. .......+. ++...|++++|...+.+++... +............+..+...+++++|+..+.+++.....
T Consensus 128 ~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 128 P---DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 1 122333344 8999999999999999996531 100234555666667788899999999999999987433
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
. ....+..++..+...+++.+|...+..++..... .......++..+...+..+++...+.+++.
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 3455778999999999999999999999987532 245666777777777889999999999887
Q ss_pred HHH
Q 017109 362 ARK 364 (377)
Q Consensus 362 ~~~ 364 (377)
..+
T Consensus 265 ~~~ 267 (291)
T COG0457 265 LDP 267 (291)
T ss_pred hCc
Confidence 544
No 189
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.42 E-value=1e-05 Score=58.17 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
....++.-|...+..|+|++|++.++..... -|..+....+...++.+|+..|++++|+..+++-+++ .|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Confidence 3567788899999999999999999988776 3445666789999999999999999999999999998 47
Q ss_pred CChhHHHHHHHHHHHHHHcCC---------------hhhHHHHHHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGK---------------ENDSEALFLESIRILE 280 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~ 280 (377)
.|+....+++..|.++..+.. ..+|...|++.+...+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 789999999999999988876 6677777777776643
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=98.42 E-value=3.7e-06 Score=61.83 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=85.5
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
++......+..|.-++..|++++|...|+-..-. ++.+ ...+..||.++..+++|++|+..|..+..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~n---~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DFYN---PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 5667788899999999999999999999887765 3333 4568999999999999999999999998875
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+..+...+..|.++...|+.+.|...|+.++.
T Consensus 102 -----~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 -----KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -----cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 22334577899999999999999999999887
No 191
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=0.00014 Score=62.23 Aligned_cols=204 Identities=13% Similarity=0.109 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
....+...|..-..++++..|...+++|++. +......+...+.+-+.......|...+.+|+.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv--------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l------ 137 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV--------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL------ 137 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc------
Confidence 3455666677777888888888888888865 45667788889999999999999999999999984
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|..-..++....+-...|+...|.+.|++-++.. |. ..++......-.+.+..+.|...|++-+-.
T Consensus 138 --PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~--------P~-eqaW~sfI~fElRykeieraR~IYerfV~~--- 203 (677)
T KOG1915|consen 138 --PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE--------PD-EQAWLSFIKFELRYKEIERARSIYERFVLV--- 203 (677)
T ss_pred --chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC--------Cc-HHHHHHHHHHHHHhhHHHHHHHHHHHHhee---
Confidence 3345677777777778999999999999988773 32 346666667777788889999999887754
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
||. ...+...+..-.+.|+...|...|+.|++.... ...........|..-..+..++.|...|+-+++
T Consensus 204 -----HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 204 -----HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred -----ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 235677888888999999999999999987633 233345566677777888888999888888877
Q ss_pred HHH
Q 017109 362 ARK 364 (377)
Q Consensus 362 ~~~ 364 (377)
..+
T Consensus 273 ~~p 275 (677)
T KOG1915|consen 273 HIP 275 (677)
T ss_pred hcC
Confidence 543
No 192
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=3.2e-05 Score=70.38 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=90.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----HHHHhcCCCCh---------hHHHHHHHHHHHHHHcCChhhH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK----IKGRVLGHGNI---------DYADTMYHLATVLYLQGKENDS 268 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~---------~~~~~~~~la~~~~~~g~~~~A 268 (377)
+...+-.+|++.+..+...++.+.|+++|+++-. +.+-+. ++.+ .....+...|..+...|+.+.|
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~-e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK-EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH-hChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 3445567899999999999999999999998632 221111 1101 1124566678888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC
Q 017109 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS 348 (377)
Q Consensus 269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 348 (377)
+.+|..+.. ++.+..+..-+|+.++|-...++.-. ..+.+.||+.|...|+
T Consensus 932 l~~Y~~A~D----------------~fs~VrI~C~qGk~~kAa~iA~esgd-------------~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 932 LSFYSSAKD----------------YFSMVRIKCIQGKTDKAARIAEESGD-------------KAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHHhhh----------------hhhheeeEeeccCchHHHHHHHhccc-------------HHHHHHHHHHhhhhHH
Confidence 999988765 34455666667887777665554321 3456678888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 017109 349 LMEAQELFERCLEAR 363 (377)
Q Consensus 349 ~~~A~~~~~~al~~~ 363 (377)
..+|+.+|.+|....
T Consensus 983 v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQAFS 997 (1416)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887765543
No 193
>PRK11906 transcriptional regulator; Provisional
Probab=98.39 E-value=1.7e-05 Score=68.17 Aligned_cols=148 Identities=10% Similarity=0.023 Sum_probs=109.9
Q ss_pred hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 99 EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQ---------GKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
+.|..++.+++... +.+|..+.++..++.+++.. .+..+|....++|+++ ++..+.++.
T Consensus 275 ~~Al~lf~ra~~~~----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da~a~~ 342 (458)
T PRK11906 275 YRAMTIFDRLQNKS----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDGKILA 342 (458)
T ss_pred HHHHHHHHHHhhcc----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCHHHHH
Confidence 34444555554222 35667788888888887665 2345677777777776 778899999
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.+|.+....++++.|...+++|+.+ +|..+.+++..|.+....|+.++|.+.+++++++. |...
T Consensus 343 ~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--------P~~~ 406 (458)
T PRK11906 343 IMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--------PRRR 406 (458)
T ss_pred HHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------chhh
Confidence 9999999999999999999999998 56668999999999999999999999999999985 4332
Q ss_pred H-HHHHHHHHHHHcCChhhHHHHHHH
Q 017109 250 D-TMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 250 ~-~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
. ....+..-.+.....++|+.+|-+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 407 KAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 2 222333313344567888887755
No 194
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.38 E-value=0.0021 Score=60.09 Aligned_cols=242 Identities=14% Similarity=0.050 Sum_probs=163.8
Q ss_pred chhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYF-LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
.+...+.+...+|.++. ...++++|+.++++++.+.++. .-......+...++.++...+... |...+++.++.++
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 44556788999999988 7899999999999999987652 222234566677899999888777 9999999999877
Q ss_pred HhcCCCchhHHHHHHHH-HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNL-GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
.. .+.....++..+ .......+++..|.+.++...........+ .....+....+.++...+..+++++.++++
T Consensus 131 ~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 131 TY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 63 122223333333 333434489999999999999887543221 334455556677788888899999999999
Q ss_pred HHHHHHc--CCCCCHHHHHHHHHHHH--HHHHhCChhHHHHHHHHHHHHHHhccCCC---C-------------------
Q 017109 276 IRILEEN--GEGDSMTCIRRLRYLAQ--TYVKANRLTDAETVQRKILHIMESSKGWN---S------------------- 329 (377)
Q Consensus 276 l~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~------------------- 329 (377)
....... .+...+....++..+-. ++...|+++.+...+++.-.......... .
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 7776654 22223334444444443 45567887788777666555443332210 0
Q ss_pred --hh----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 330 --LD----------TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 330 --~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
+. .+-++..-|......|..++|.+++++++...++..
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 00 233444445666677878899999999999998877
No 195
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00021 Score=56.63 Aligned_cols=152 Identities=18% Similarity=0.042 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.....-|.+|...|++++|+........+ .+...--.++.++.+++-|...++++.++.+.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------ 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------ 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------
Confidence 44555677888888888888877763332 23333445677778888888888887776421
Q ss_pred hhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYL----QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.++..||..+.. .+++.+|.-+|++.-+. .+.+...+..++.++..+|++++|...++.++...
T Consensus 170 ----~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 170 ----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred ----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 123334443332 34566666666654331 22234456778888888899999888888888653
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
+....++.++..+-...|...++..-+
T Consensus 238 --------~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 238 --------AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred --------CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 223667777777777788776655443
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.37 E-value=3.1e-06 Score=72.51 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=64.9
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.+|.....++++|.+|...|+|++|+..|++++++ .|++.....+++++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999998 5555444467999999999999999999999999997
No 197
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.36 E-value=0.00042 Score=64.08 Aligned_cols=232 Identities=19% Similarity=0.040 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGF-GERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+.....+.......++++|.....++........ +......+.....-|.+....|++++|+++.+.++....+. .
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~ 492 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---A 492 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---c
Confidence 4455567788889999999999988876644320 01112345555566888889999999999999999875543 2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh--hHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN--DSEALFLESIRILE 280 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~ 280 (377)
......++..+|.+..-.|++++|..+.+++.+..++.... .....+....+.++..+|+.. +....+........
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~--~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY--HLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHL 570 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 33446788899999999999999999999999998764332 444556677788999999332 22222322222111
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
... +.+.....+...+...+ -+++.+..-....++........ .....-.+..++.++...|+.++|...+.+..
T Consensus 571 ~q~-~~~~f~~~~r~~ll~~~---~r~~~~~~ear~~~~~~~~~~~~-~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 571 EQK-PRHEFLVRIRAQLLRAW---LRLDLAEAEARLGIEVGSVYTPQ-PLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred hhc-ccchhHHHHHHHHHHHH---HHHhhhhHHhhhcchhhhhcccc-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 110 11112222333333333 33677776666666664333221 12222233589999999999999999999888
Q ss_pred HHHHh
Q 017109 361 EARKK 365 (377)
Q Consensus 361 ~~~~~ 365 (377)
.+..+
T Consensus 646 ~l~~~ 650 (894)
T COG2909 646 RLLLN 650 (894)
T ss_pred HHhcC
Confidence 76544
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.33 E-value=6.2e-06 Score=53.27 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=54.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+..+|...+++++|+.++++++.+ +|.....+...|.++...|++++|...++++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356889999999999999999998 7888999999999999999999999999999987
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.31 E-value=6.2e-05 Score=56.15 Aligned_cols=137 Identities=17% Similarity=0.103 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
..-.+.+|......|++.+|...|++++.- -.......+..++...+..+++..|...+++..+.-.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p------ 155 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP------ 155 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC------
Confidence 345677899999999999999999999863 2344567888999999999999999999999887621
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
..........+|..+..+|++.+|+..|+.++..+ |. ..+....+..+.++|+.++|..-+....+...+
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 12223456778999999999999999999999886 22 344556678889999999998888777665544
No 200
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.8e-05 Score=59.63 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+..+-.-|+-++..|+|++|..-|..|++++.... .......|.+.|.+..+++.++.|+.-..+++++.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------- 164 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------- 164 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-------
Confidence 34455568889999999999999999999977652 34557789999999999999999999999999995
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....++...|.+|....++++|+.-|.+.++.
T Consensus 165 -pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 -PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 777888889999999999999999999999887
No 201
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=3.2e-05 Score=58.30 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+..+-.-|.-++..|+|.+|..-|..|++++.... ......++.+.|.+...++.++.|+.-+.+++++
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------- 163 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------- 163 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-------
Confidence 355667779999999999999999999999975541 2456778889999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|....++...+.+|..+..|++|+.-|++.++..
T Consensus 164 -~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 164 -NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred -CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 45556788889999999999999999999998884
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=4e-06 Score=53.29 Aligned_cols=53 Identities=34% Similarity=0.385 Sum_probs=48.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+..|++++|+..|++++.. +|....+...+|.++...|++++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999988 7888999999999999999999999999999886
No 203
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=0.0013 Score=63.82 Aligned_cols=236 Identities=14% Similarity=0.115 Sum_probs=172.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
..+.++.++|...+.+++....-. +......+|..+-+....-|.-+.-.+.|++|.+.+ .-..++..|
T Consensus 1468 ~LelsEiekAR~iaerAL~tIN~R--EeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---------d~~~V~~~L 1536 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFR--EEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---------DAYTVHLKL 1536 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhhCCcc--hhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---------chHHHHHHH
Confidence 345788888888888888654221 222334445444445555577777888899988863 234678889
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
..+|...+.+++|.++++..++-+.+. ..+|...+..++.+.+-+.|...+.+|+....+ ......
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~--------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk------~eHv~~ 1602 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQT--------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK------QEHVEF 1602 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcch--------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch------hhhHHH
Confidence 999999999999999999999875422 468899999999999999999999999998733 234566
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
....|.+.++.|+.+.+...|+..+.. .|.....|.-+...-.+.|+.+-...+|++++...- .+.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l------~~k 1668 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL------SIK 1668 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC------Chh
Confidence 777889999999999999999998874 444455677778888889999999999999998631 233
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhh
Q 017109 332 TVIAAEGLALTLQST-GSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 332 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~ 366 (377)
.+...+..=.-|.+. |+-......=.+|.+.....
T Consensus 1669 kmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred HhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 345555544445444 66665555556666655544
No 204
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.27 E-value=0.00022 Score=63.94 Aligned_cols=181 Identities=16% Similarity=0.122 Sum_probs=122.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhH---HHHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHV---ASACNNLAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
-.||-+.++..+.++.+. ... ..|.- .-.|+.....+.. ..+.+.|.+.+...... .|.-.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcH
Confidence 458889999999888652 111 11111 1111221111221 23445555555555554 33445
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
......|.++...|+.++|++.+++++....... .....+++.++.++..+.+|++|..++.+..+. +.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SK 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cc
Confidence 7788899999999999999999999885432221 233567899999999999999999999998874 34
Q ss_pred HHHHHHHHHHHHHHHHhCCh-------hHHHHHHHHHHHHHHhccCCCChhHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRL-------TDAETVQRKILHIMESSKGWNSLDTVIAAEG 338 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 338 (377)
...+...+..|.++...|+. ++|.+++.++-....+..+...|....+...
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK 394 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRK 394 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHH
Confidence 45566677789999999999 8899999998888877666555533333333
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.26 E-value=4.7e-06 Score=71.39 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=62.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHH---HHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVA---SACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
..|.....++++|..|...|+|++|+..|++++++ +|... .+++++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55677899999999999999999999999999998 45544 56999999999999999999999999996
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=5.6e-05 Score=59.57 Aligned_cols=143 Identities=14% Similarity=0.072 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...+.+.+..++.-.|.|.-+...+.+.++. +.+........+|.+.++.|+.+.|..+++..-+...+..+
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~- 247 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG- 247 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc-
Confidence 3567788889999999999999999999884 24556677788999999999999999999988776665532
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
-.....+..+.+.++...+++.+|...+.+++..- +..+.+.++.|.+....|+..+|++.++.+++..+.
T Consensus 248 -~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 248 -LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred -cchhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 23345678889999999999999999999887663 566778889999999999999999999999887543
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00018 Score=56.83 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
...+.+.+..++...|.|.-+...+.+.++. +++........+|.+..+.|+.+.|..++++.-+...+..+.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence 3456778888999999999999999999885 223334667789999999999999999999887666555433
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.....+..+.+.++...+++.+|...+.+++.. ++..+.+.++.|.|..-.|+...|++.++.++++.
T Consensus 249 --q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 249 --QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred --chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344567788899999999999999999888774 23344556788999999999999999999988774
No 208
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.22 E-value=0.00013 Score=65.40 Aligned_cols=176 Identities=19% Similarity=0.085 Sum_probs=122.8
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----HccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL----VQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
-.|+-+.++..+.++.+. ....++-.......|+....... .....+.|.+.+......+ |.....+
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--------P~s~lfl 270 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--------PNSALFL 270 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--------CCcHHHH
Confidence 358888899888887652 11111101111112222222222 2345677777777777765 6777788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
...|+++...|+.++|++.+++++....+. ......++..++.++..++++++|..++.+..+.. ....
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WSk 339 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWSK 339 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccHH
Confidence 899999999999999999999988533222 22334567889999999999999999999888742 1233
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHhhCCCCCC
Q 017109 333 VIAAEGLALTLQSTGSL-------MEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
+...+..|.++...|+. ++|..++.++-....++.+...|
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 66777889999999999 88999999988888877765444
No 209
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.19 E-value=6.4e-06 Score=52.34 Aligned_cols=54 Identities=28% Similarity=0.234 Sum_probs=46.5
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
...|++++|+..+++++.. .|....+...+|.++...|++++|...+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5789999999999999998 33345788899999999999999999999988774
No 210
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.00048 Score=52.91 Aligned_cols=199 Identities=20% Similarity=0.116 Sum_probs=122.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
-.|....+++.+|..+...|+|+.|.+.|...+++ +|..-.+..+.|..+..-|++.-|.+-+.+-...
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~--- 162 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD--- 162 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc---
Confidence 44567789999999999999999999999999988 7888888999999999999999999888776664
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER-ALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
++++|... .|..+ -...-++.+|..-+.+ +....+. ......+-+.+ |+..+ ...++++.
T Consensus 163 --D~~DPfR~-LWLYl---~E~k~dP~~A~tnL~qR~~~~d~e-----~WG~~iV~~yL-------gkiS~-e~l~~~~~ 223 (297)
T COG4785 163 --DPNDPFRS-LWLYL---NEQKLDPKQAKTNLKQRAEKSDKE-----QWGWNIVEFYL-------GKISE-ETLMERLK 223 (297)
T ss_pred --CCCChHHH-HHHHH---HHhhCCHHHHHHHHHHHHHhccHh-----hhhHHHHHHHH-------hhccH-HHHHHHHH
Confidence 44555321 11111 1123356666654433 2222110 01111122222 33221 22333333
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLME 351 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 351 (377)
....+ ...-......++..+|..+...|+.++|...|+-++...-- +..+...+...++.+...+.+..+
T Consensus 224 a~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy----nfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 224 ADATD-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY----NFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred hhccc-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHhccccchhhh
Confidence 32221 10012334567889999999999999999999988764211 112334556666666665544443
No 211
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.17 E-value=0.00039 Score=55.29 Aligned_cols=219 Identities=11% Similarity=0.121 Sum_probs=146.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
..+.++|+..|++++++- |.....-..++..+..+++.+|++++-.+.|.+.+...+.....+... .+.+.+-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence 458899999999999872 233455678899999999999999999999999998776543322221 12222222
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCH----HHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSM----TCI 291 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~ 291 (377)
.-....+.+--..+|+..++..+....+ ......-..+|.+|+..++|.+-.+.+++....+....+.++. ...
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 2223344444555666666555433222 3334455678999999999999888888888777766554432 234
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV-IAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.++..-..+|-.+.+...-...|++++.+-... .||... .+...=|.++.+.|++++|..-|=+|..-+++
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 445555667778888888888999998875443 244332 23334467788889999998877777765554
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.16 E-value=1.4e-05 Score=51.57 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=52.7
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
|..+|...+++++|++++++++.. +|.....+...|.++..+|++++|...++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 357899999999999999999998 33446889999999999999999999999999885
No 213
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.16 E-value=0.00083 Score=46.10 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=87.7
Q ss_pred HHHHHHHHHH--HHHccCHHHHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 207 GVAFHNLGQF--YLVQRKLEDACTYYERALKIKGRVLGHGN----IDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 207 ~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
+.+|..|+.. ....|-|++|...+++++++.+.+..... -..+.++..|+..+...|+|++++....+++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 4455555444 45668999999999999999876643321 12466788899999999999999999999999988
Q ss_pred HcCCCC---CHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 281 ENGEGD---SMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 281 ~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
..+.-+ ....+.+.++.+..+...|+.++|+..|+.+-++.....|.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 765322 23455667788999999999999999999999987665543
No 214
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.15 E-value=0.0064 Score=56.95 Aligned_cols=198 Identities=11% Similarity=0.016 Sum_probs=138.1
Q ss_pred HhHHHHHHHHHHHHH-HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 162 PHVASACNNLAELYR-VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 162 ~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
...+.++..+|.++. ...+++.|+.++++++.++++. + -......+...++.++.+.+... |...+++.++..+..
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~-~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-R-LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-c-hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 446888999999888 7899999999999999997762 1 22233556667799999888887 999999999988642
Q ss_pred cCCCChhHHHHHHHH-HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHL-ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 241 ~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
. +.....+...+ ...+...+++..|++.++.........+ +......+....+.+....+..+++++..+++..
T Consensus 133 ~---~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 133 G---HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred C---chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 1 11222222223 3334344899999999999999877554 4444555555667778888889999999999977
Q ss_pred HHHhc--cCCCChhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 320 IMESS--KGWNSLDTVIAAEGLALT--LQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 320 ~~~~~--~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
..... .+..++....++..+-++ +...|+++.+...+++.-+...+..
T Consensus 208 ~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~ 259 (608)
T PF10345_consen 208 QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIK 259 (608)
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 76644 222244445555555444 4567888888888777766665543
No 215
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.15 E-value=0.001 Score=52.94 Aligned_cols=242 Identities=11% Similarity=0.062 Sum_probs=160.1
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
.+.++|...+.+.++.... ....-..++-++-.+++..|++++.++.|.+.+...+.....+... .+.+.+-..-
T Consensus 41 ~~p~~Al~sF~kVlelEgE---KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyi 115 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGE---KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYI 115 (440)
T ss_pred cCHHHHHHHHHHHHhcccc---cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHH
Confidence 4556666666666654432 3334567888899999999999999999999998876654333222 2222222222
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI----DYADT 251 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~ 251 (377)
....+.+--..+|+..++..+... +......+-..+|.+|+..|+|.+-.+.+++.-..++.-.|.++. ....+
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 234455566667777777665542 334444566789999999999999999998888877665554432 34556
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
|..-...|..+++-..-..+|++++.+-...+ .+.....+...-|..+.+.|++++|-.-|-+|.+-....+.+...
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP--HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt- 270 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIP--HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT- 270 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCC--chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh-
Confidence 66666788888888888889999988755543 333344445556778889999999988888887766655443222
Q ss_pred HHHHHHHHHHHHHHcC
Q 017109 332 TVIAAEGLALTLQSTG 347 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g 347 (377)
+..-+..+|.++.+.|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2233445566665544
No 216
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.12 E-value=0.0013 Score=59.76 Aligned_cols=211 Identities=16% Similarity=0.139 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLS------ALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
.+.|-..|.+|-...++++|+++|++ ++++++-.+ .......-..-|.-+...|+++.|+.+|-++-...+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 45566678888888889999988875 455544432 122344445567778888899998888765533211
Q ss_pred Hh---cC--------------CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 197 ES---FG--------------PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 197 ~~---~~--------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
.. .+ .+.......|-.++.-|...|+|+-|.+.|.++-.. ..-...|
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my 801 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMY 801 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHH
Confidence 11 00 001111223455677777777887777777664222 1122445
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH------HHHHHHHHhccCC------
Q 017109 260 YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ------RKILHIMESSKGW------ 327 (377)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~------ 327 (377)
.+.|++.+|.++-+++.. ...+...|...+.-.-..|++.+|..+| .+++.++.+....
T Consensus 802 ~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred hccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence 666777776665554421 2234444555566666666666665554 3344443332211
Q ss_pred ---CChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 328 ---NSLD-TVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 328 ---~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.|++ ...+...+|.-+...|+...|...|-++-+
T Consensus 873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 1222 356777888999999999888887766544
No 217
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.12 E-value=2.1e-05 Score=64.25 Aligned_cols=96 Identities=27% Similarity=0.234 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
+-..|+-|+.+|.|++|+.+|.+++.. +|.....+.+.+.+|+.+..|..|..-+..++.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 456799999999999999999999987 7778888999999999999999999999999998 455
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+..+|...+..-...|+..+|.+-++.++++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 67899999999999999999999999999884
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.11 E-value=0.00088 Score=54.40 Aligned_cols=193 Identities=22% Similarity=0.219 Sum_probs=140.8
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH-
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE- 173 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~- 173 (377)
.+.+..+.......+.. ...+.....+...+..+...+++..++..+..++... ..+ .......+.
T Consensus 72 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~ 138 (291)
T COG0457 72 LGRLEEALELLEKALEL-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD------PDP--DLAEALLALG 138 (291)
T ss_pred cccHHHHHHHHHHHHhh-----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------CCc--chHHHHHHHH
Confidence 45555555555444432 1334556778888999999999999999999988751 112 223333344
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID-YADTM 252 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~ 252 (377)
++...|+++.|...+.+++.. .+............+..+...++++.|+..+.+++... +. ....+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~ 205 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLN--------PDDDAEAL 205 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--------cccchHHH
Confidence 899999999999999999553 11112345566667777889999999999999999886 33 46778
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
..++..+...+++++|...+.+++...+. .......++..+...+.++++...+.+++...
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999987332 23345566777777778999999999988764
No 219
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00021 Score=58.47 Aligned_cols=165 Identities=13% Similarity=-0.008 Sum_probs=130.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 130 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
+.+.+..|++.+|-....+.++- .|....+...--.+++..|+.......+++.+.. ..++-|....+
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~----wn~dlp~~sYv 177 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK----WNADLPCYSYV 177 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc----cCCCCcHHHHH
Confidence 45567788999998888888864 6777777777788899999999888888887764 24566777777
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (377)
...++..+...|-|++|++..++++++. +..+.+....+.++...|++.++.+...+.-...+. ....
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~ml 245 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWML 245 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhHH
Confidence 8888999999999999999999999985 666778888999999999999999998876554432 1222
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
...-|-..|.++...+.|+.|++.|+.-+
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 33335567888888899999999998644
No 220
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.05 E-value=1.3e-05 Score=45.14 Aligned_cols=41 Identities=37% Similarity=0.536 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
+.++.++|.+|..+|++++|+.++++++.+.++..|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56889999999999999999999999999999999988874
No 221
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00049 Score=54.59 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
....-|.++...|++++|+........+ ++...--.++.+..+++-|...++++.++-+ +
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ide-----d-- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDE-----D-- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccch-----H--
Confidence 3445578899999999999988773322 2333334677788889999999888888721 1
Q ss_pred hHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 205 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.++..||..+.. .+++.+|.-+|++.-+.. +.+....+.++.+++.+|++++|...++.++..
T Consensus 170 ---~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--------~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-- 236 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--------PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-- 236 (299)
T ss_pred ---HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--------CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 244555555543 245677777777654432 455678899999999999999999999999874
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
.+....++.++..+-...|...++.+-+-.-+.
T Consensus 237 ------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 237 ------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred ------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 223356678888888889998887665544333
No 222
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.003 Score=52.05 Aligned_cols=166 Identities=12% Similarity=-0.076 Sum_probs=125.6
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
-+.+....|++.+|....++.++- .|....+...--..+..+|+.+.....+++.+... .++-|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 345667789999998888888875 44445566666678888999998888888877653 344566677
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
....++..+...|-|++|.+..++++++ ++....+...++.++...|++.++.+...+.-...+.. ..
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~m 244 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WM 244 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hH
Confidence 7788899999999999999999999987 23334556678899999999999999888765543321 12
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
....-|..-|.++.+.+.++.|++.|.+-+
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 234456677888899999999999998744
No 223
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.01 E-value=3.5e-05 Score=63.07 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (377)
.-..|.-|+++|.|++|+++|.+++... |..+..+.+.+..|+++.+|..|..-+..++.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 3457889999999999999999999885 666778889999999999999999999999987 335
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
...+|...+..-..+|+..+|.+-++.++++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 56778888999999999999999999999873
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.01 E-value=0.0017 Score=55.31 Aligned_cols=208 Identities=12% Similarity=0.031 Sum_probs=129.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
...+..+.+...+.+...+...+........+..++-..|....+|+.-+.+.+..-.+ ...+......+....|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 33444445555556655555543322334666778888899999999888877765544 11112223456677888
Q ss_pred HHHH---ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChhhHHHHHHHHHHHHHHcC
Q 017109 216 FYLV---QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ---------GKENDSEALFLESIRILEENG 283 (377)
Q Consensus 216 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~ 283 (377)
++.+ .|+.++|+..+..++... ....+.++..+|.+|... ...++|+..|.++.++-+..
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~- 259 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY- 259 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-
Confidence 8888 899999999999875543 134456777778877532 24677888888887763211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH-H---HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL-H---IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
..-.|++.++...|...+...-+++.. . ..-+....+..........++.+..-.|++++|.+.++++
T Consensus 260 --------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 260 --------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred --------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 113466777777776555444344433 1 1112222222233455666778888899999999999999
Q ss_pred HHHH
Q 017109 360 LEAR 363 (377)
Q Consensus 360 l~~~ 363 (377)
+.+.
T Consensus 332 ~~l~ 335 (374)
T PF13281_consen 332 FKLK 335 (374)
T ss_pred hhcC
Confidence 8753
No 225
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=0.0013 Score=49.80 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=100.6
Q ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHHHHhhCC-------------CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 127 TDSGRDYFLQGKLA---EAEKLFLSALQEAKEGFG-------------ERDPHVASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 127 ~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~-------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
...|.-|+...+.+ +|-..|+++++....-.. +....-..+...++..+...|++++|+..++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34455566555444 666677777765432211 01122234456788899999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
++.. ..|......+-..++.+...+|.+++|+..+.....- ...+......|.++...|+-++|..
T Consensus 115 ~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~---------~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 115 ALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE---------SWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred HHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---------cHHHHHHHHhhhHHHHcCchHHHHH
Confidence 9975 3345556678889999999999999999888764332 3445566778999999999999999
Q ss_pred HHHHHHHHH
Q 017109 271 LFLESIRIL 279 (377)
Q Consensus 271 ~~~~al~~~ 279 (377)
.|+++++..
T Consensus 181 ay~kAl~~~ 189 (207)
T COG2976 181 AYEKALESD 189 (207)
T ss_pred HHHHHHHcc
Confidence 999999863
No 226
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0001 Score=57.20 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+.-+..-|..++....|+.|+..|.+++.+ +|..+..+.+-+.+++...+++.+..-..+++++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-------- 73 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-------- 73 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------
Confidence 344556677888889999999999999987 8888899999999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
.+..+...+.+|........|++|+..++++..+.+...
T Consensus 74 ~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 74 DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 566688999999999999999999999999998876543
No 227
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=6.3e-05 Score=58.38 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+.-+..-|..++...+|+.|+..|.+++.+ +|..+..+.+.+.++++..+++.+..-.++++++.
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~------- 74 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD------- 74 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-------
Confidence 334455677788888999999999999987 55556789999999999999999999999999996
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
+......+.+|........|++|+..++++..+.+....+
T Consensus 75 -~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 75 -PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred -hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 7889999999999999999999999999999988776543
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.94 E-value=0.0022 Score=55.78 Aligned_cols=131 Identities=22% Similarity=0.137 Sum_probs=101.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc-----
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED----- 203 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 203 (377)
+-...++..+...-++..++|+++ +|+-+.+|..|+.-.. ....+|+.+++++++..+...+.+.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 344456778899999999999998 6777888887776432 3478899999999988766544321
Q ss_pred ------------hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHH
Q 017109 204 ------------IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEAL 271 (377)
Q Consensus 204 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (377)
.....+...+|.+..+.|+.++|++.++..++... ..+...+..+|..++...+.|.++...
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 11245667899999999999999999999887641 123566889999999999999999988
Q ss_pred HHHH
Q 017109 272 FLES 275 (377)
Q Consensus 272 ~~~a 275 (377)
+.+-
T Consensus 318 L~kY 321 (539)
T PF04184_consen 318 LAKY 321 (539)
T ss_pred HHHh
Confidence 8774
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=0.0021 Score=48.71 Aligned_cols=100 Identities=19% Similarity=0.100 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
..+...++..+...|++++|+..++.++... .+......+-.+||.+...+|++++|+..+......
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-------- 155 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-------- 155 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--------
Confidence 3455678899999999999999999988652 234455566778999999999999998888764332
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
..........|+++...|+.++|+..|+++++.
T Consensus 156 -~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 156 -SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred -cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 223556677899999999999999999999986
No 230
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0029 Score=50.88 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=152.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI 206 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 206 (377)
..+++-....+++++|+..|.+.+.--...........-.+..+++.+|...|++..--+.....-+...... .+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhH
Confidence 3566677788999999999998886411110001123456778999999999999887777766666555442 2333
Q ss_pred HHHHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 207 GVAFHNLGQ-FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 207 ~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
..+...+-. .-.....++.-+..+...++...+-... ......-..+..++...|+|.+|+......+.-+++..
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~--fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-- 159 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK--FLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-- 159 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--
Confidence 333333322 2234456788888888888876432111 12233445678899999999999999999988888765
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT-VIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
+.+.....+..-..+|....+..++...+..|-.......-| |.. +..-..-|..+..-.+|.-|..+|-++++-+.
T Consensus 160 DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 160 DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 566666667777888999999999888888777665544322 221 22222335566777889999999988877543
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.84 E-value=0.012 Score=49.59 Aligned_cols=210 Identities=14% Similarity=-0.008 Sum_probs=130.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 208 (377)
-|.+-.-.|+-..|.++-.++-++.. .|.+.+ ++..-+..-...|+++.|.+-|+..+.. ......
T Consensus 90 tGliAagAGda~lARkmt~~~~~lls----sDqepL--IhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PEtRll 155 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLS----SDQEPL--IHLLEAQAALLEGDYEDARKKFEAMLDD--------PETRLL 155 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhh----ccchHH--HHHHHHHHHHhcCchHHHHHHHHHHhcC--------hHHHHH
Confidence 35555667888888888888776532 233333 3444466667789999999999887763 111112
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSM 288 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 288 (377)
.+..|-.--...|..+.|..|-+++.... |....+....-...+..|+++.|+++.+.......-....-..
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR 227 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAER 227 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH
Confidence 23333333456899999999999998886 5555555555566778999999999998766542221100111
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 289 TCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.....+...+... ..-+...|...-.++.++. |+..-.-..-+..+.+.|+..++-..++.+.+ .
T Consensus 228 ~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~--------pdlvPaav~AAralf~d~~~rKg~~ilE~aWK------~ 292 (531)
T COG3898 228 SRAVLLTAKAMSL-LDADPASARDDALEANKLA--------PDLVPAAVVAARALFRDGNLRKGSKILETAWK------A 292 (531)
T ss_pred HHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcC--------CccchHHHHHHHHHHhccchhhhhhHHHHHHh------c
Confidence 1111122222222 2245667777777776663 33355566677888888888888888887765 2
Q ss_pred CCCCccc
Q 017109 369 QDHIQVC 375 (377)
Q Consensus 369 ~~~~~~a 375 (377)
..||+++
T Consensus 293 ePHP~ia 299 (531)
T COG3898 293 EPHPDIA 299 (531)
T ss_pred CCChHHH
Confidence 4566654
No 232
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.84 E-value=0.014 Score=50.71 Aligned_cols=129 Identities=11% Similarity=0.092 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH-HHHHc-
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR-ILEEN- 282 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~- 282 (377)
..+..+...+.+..+.|+++.|...+.++...... .....+.+....+.++...|+..+|+..++..+. .....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 45678889999999999999999999987765311 1122456777889999999999999999998887 32222
Q ss_pred ------------------------CCCCCHHHHHHHHHHHHHHHHh------CChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 283 ------------------------GEGDSMTCIRRLRYLAQTYVKA------NRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 283 ------------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
........+.++..+|...... ++.+++...|.++.+.. +..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~~~ 291 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--------PSW 291 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--------hhH
Confidence 1111234566777788877777 88899999999998874 333
Q ss_pred HHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQS 345 (377)
Q Consensus 333 ~~~~~~la~~~~~ 345 (377)
..++..+|..+..
T Consensus 292 ~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 EKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666543
No 233
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.80 E-value=0.0018 Score=49.75 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=89.1
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
......++..+|..|.+.|+.++|++.|.++.+.+. ........+.++..+....+++.....++.++....+..
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 455678899999999999999999999999887652 224567788899999999999999999999999887774
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+ +..........-|..++..++|.+|...|-.+...+
T Consensus 107 ~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 107 G--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred c--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3 333333444556777788899999999988776544
No 234
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.80 E-value=0.0046 Score=42.58 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=87.8
Q ss_pred HHHHHHHHHHH--HHHcCChhhHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 248 YADTMYHLATV--LYLQGKENDSEALFLESIRILEENGEGDS----MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 248 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
...+|..|+.. ....|-|++|..-+.+++++....+.... -..+.++..|+..+..+|+|++++...++++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 34455555444 45678999999999999999887754432 2345677889999999999999999999999988
Q ss_pred HhccCCCC---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 322 ESSKGWNS---LDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 322 ~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.+...-+. ...+.+.++.+..+...|+.++|...|+.+-++..+-.|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 76543322 224667778889999999999999999999998877555
No 235
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.79 E-value=0.00076 Score=53.34 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=79.8
Q ss_pred hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 017109 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG-----NIDYADTM 252 (377)
Q Consensus 178 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 252 (377)
...+++|++.|.-|+-...-. +.++...+..+..+|.+|...|+.+....++++|++.+.+..... ......++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 456788888888888765544 345567789999999999999998888888888888876653221 23446788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+.+|.+..+.|++++|..++.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 89999999999999999999999875
No 236
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.79 E-value=0.017 Score=48.79 Aligned_cols=228 Identities=12% Similarity=-0.005 Sum_probs=125.1
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSK-WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
.-.|++++|...+...+. +|.+ .--+..+-.--...|+.+.|+.+.+++... -|....+....
T Consensus 131 l~eG~~~~Ar~kfeAMl~--------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~At 194 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD--------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARAT 194 (531)
T ss_pred HhcCchHHHHHHHHHHhc--------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHH
Confidence 346888888777776653 2221 112223333345678999999999888876 56666666666
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR--IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
-...+..|+++.|+++.+.......- +++... .+..+..-+.... .-+...|...-.++.++. ++..
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vi--e~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~--------pdlv 263 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVI--EKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA--------PDLV 263 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC--------Cccc
Confidence 67778899999999998876553111 111111 1111111111111 123444555555544443 3333
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHH-----------------------------HHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESI-----------------------------RILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al-----------------------------~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
.+-..-+..++..|+..++-..++.+. ++..- .++........+..
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~sl-----k~nnaes~~~va~a 338 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESL-----KPNNAESSLAVAEA 338 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhc-----CccchHHHHHHHHH
Confidence 333344444445555444444444433 32111 12223334455666
Q ss_pred HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 017109 301 YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST-GSLMEAQELFERCLE 361 (377)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 361 (377)
-+.-|++..|..--+.+.... | ...++..|+++-... |+-.+...++.+++.
T Consensus 339 Alda~e~~~ARa~Aeaa~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 339 ALDAGEFSAARAKAEAAAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhccchHHHHHHHHHHhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 666666666666655555442 1 245667778887655 888888888888775
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.77 E-value=0.0037 Score=46.60 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC--C------------HhHHHHHHHHHHHHHHhcCHhHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER--D------------PHVASACNNLAELYRVKKAFDKAEPLYL 189 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 189 (377)
..+...|......|+...++..+++++.+++-.+-++ . .....+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4444556667778899999999999998775432211 0 1234566778888999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 190 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
+++.. +|..-.++..+..++...|+..+|+..|++......+-.|
T Consensus 87 ~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 87 RALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 99998 4555678999999999999999999999999888775444
No 238
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.0045 Score=53.64 Aligned_cols=264 Identities=15% Similarity=0.106 Sum_probs=162.7
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhhCCC---------C
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTS--KWRVFTDSGRDYFLQGKLAEAEKLFLSALQ-EAKEGFGE---------R 160 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~---------~ 160 (377)
+-.|++..|.++....=-....-+...|. ..-.++++|.+++..|.|.-+..+|.+|++ ...+...+ .
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 44688888877766432222211111222 344568999999999999999999999995 43333111 0
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC------------------
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK------------------ 222 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------ 222 (377)
......++++.|..|...|++-.|.++|.++...+... | ..|..++.++....+
T Consensus 331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-----P---rlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~ 402 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-----P---RLWLRLAECCIMALQKGLLEEGNSSLSRSEIRV 402 (696)
T ss_pred cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-----c---HHHHHHHHHHHHHhhhhhhhhccCCccccccee
Confidence 12346788999999999999999999999999987653 2 456666666553100
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHh-------------------------------
Q 017109 223 -------------------------------LEDACTYYERALKIKGRV------------------------------- 240 (377)
Q Consensus 223 -------------------------------~~~A~~~~~~al~~~~~~------------------------------- 240 (377)
.+-|.-+++.++-+..+.
T Consensus 403 ~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~S 482 (696)
T KOG2471|consen 403 HVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDS 482 (696)
T ss_pred eeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcch
Confidence 223444555554433100
Q ss_pred ---cC-------CCCh--------hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 017109 241 ---LG-------HGNI--------DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYV 302 (377)
Q Consensus 241 ---~~-------~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 302 (377)
.+ +..| ....++.+.+.+-...|+.-.|+..-.+.++..+-. .......+..-|..+.
T Consensus 483 k~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS----~~~kfLGHiYAaEAL~ 558 (696)
T KOG2471|consen 483 KEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLS----KIYKFLGHIYAAEALC 558 (696)
T ss_pred hcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhh----hHHHHHHHHHHHHHHH
Confidence 00 0111 123456677888889999999999998888753221 1111112233345555
Q ss_pred HhCChhHHHHHHHHHH------HH------HHh----------ccCCC------Chh--HHHHHHHHHHHHHHcCCHHHH
Q 017109 303 KANRLTDAETVQRKIL------HI------MES----------SKGWN------SLD--TVIAAEGLALTLQSTGSLMEA 352 (377)
Q Consensus 303 ~~g~~~~A~~~~~~al------~~------~~~----------~~~~~------~~~--~~~~~~~la~~~~~~g~~~~A 352 (377)
.+.+..+|..++.--+ .+ +.. ..+.. .++ ......+||..+.-+|++++|
T Consensus 559 lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqA 638 (696)
T KOG2471|consen 559 LLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQA 638 (696)
T ss_pred HcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHH
Confidence 6788888877765411 00 000 00000 111 234678999999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 017109 353 QELFERCLEARKKLMP 368 (377)
Q Consensus 353 ~~~~~~al~~~~~~~~ 368 (377)
..++..+..+..+..+
T Consensus 639 k~ll~~aatl~hs~v~ 654 (696)
T KOG2471|consen 639 KSLLTHAATLLHSLVN 654 (696)
T ss_pred HHHHHHHHHhhhcccc
Confidence 9999999888775443
No 239
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.74 E-value=0.0031 Score=48.39 Aligned_cols=125 Identities=16% Similarity=0.089 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCh
Q 017109 228 TYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL 307 (377)
Q Consensus 228 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (377)
+-++.-++..+...+. .....++..+|..|.+.|+.++|++.|.++.+... ........+.++..+....|++
T Consensus 17 ~~Le~elk~~~~n~~k--esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGK--ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCH
Confidence 3344444444433333 66678899999999999999999999999877532 3345667788899999999999
Q ss_pred hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 308 TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 308 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.....++.++-.......++.. .......-|..+...++|.+|...|-.+..
T Consensus 90 ~~v~~~i~ka~~~~~~~~d~~~--~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEKGGDWER--RNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHH--HHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 9999999999988766433222 233444556667778999999888876654
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.72 E-value=0.0032 Score=46.94 Aligned_cols=107 Identities=21% Similarity=0.168 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC--------------chhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE--------------DIRIGVAFHNLGQFYLVQRKLEDACTYYERA 233 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 233 (377)
+...|......|+...+...+++++.+++..+-++ ......+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445556667788888888888888765332211 1123456677888899999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 234 LKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
+... |..-.++..+..++...|+..+|+..|++....+.+.
T Consensus 89 l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 89 LALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 9984 7777889999999999999999999999998887754
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.69 E-value=0.0062 Score=52.07 Aligned_cols=179 Identities=15% Similarity=0.070 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH---hcCHhHHHHHHHHHHHHHHHh
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV---KKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~ 198 (377)
...+..++=..|....+|+.-+.+.+..-.+ ...+-+....+....|.++.+ .|+.++|+..+..++...
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~--- 212 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD--- 212 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---
Confidence 3455666677788889998888777665443 111123345566788888888 899999999999876542
Q ss_pred cCCCchhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQ---------RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSE 269 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (377)
......++..+|.+|... ...++|+..|.++.++. + ....-.|++.++...|...+..
T Consensus 213 ----~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~-~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 213 ----ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------P-DYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred ----CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------c-cccchHHHHHHHHHcCCcccch
Confidence 222246778888887643 23566777777666653 1 1233446677777777655544
Q ss_pred HHHHHHH-H---HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 270 ALFLESI-R---ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 270 ~~~~~al-~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.-+++.. . +.-+.+..+.....+....++.+..-.|++++|...++++...
T Consensus 280 ~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 280 EELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444433 2 1212222223334445567788888899999999999999876
No 242
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.69 E-value=0.0012 Score=44.72 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=63.1
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHG-NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
....|+|.+|.+.+.+..+......... ......+..++|.++...|++++|+..+++++++.++.+ +......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4578999999999999999886654432 124566788999999999999999999999999999976 4444444444
Q ss_pred HHHHH
Q 017109 296 YLAQT 300 (377)
Q Consensus 296 ~la~~ 300 (377)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44443
No 243
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.68 E-value=0.0012 Score=52.30 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=80.2
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC-----ChhHHHH
Q 017109 261 LQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN-----SLDTVIA 335 (377)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~ 335 (377)
....+++|++.|.-|+-...-.. ..+...+..+..+|.+|...|+.+....++++|++.+.+..... ..+...+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~-~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKK-EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 34567889999998887765543 34457788899999999999998888888888888776654222 2345678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
++.+|.+..+.|++++|..++.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 889999999999999999999998873
No 244
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0016 Score=53.38 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
...+.-+..-|+-|+...+|..|+..|.+++.. ..+|....+..|.+.+-+....|+|..|+.-+.+++.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~----kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK----KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh----cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 347888899999999999999999999999975 22444567888999999999999999999999999997
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|....+++.-|.++....++++|...++..+.+.
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45557899999999999999999999999887764
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.56 E-value=0.00026 Score=40.20 Aligned_cols=42 Identities=33% Similarity=0.396 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
.++..+|..|...|++++|+..|+++++. +|....++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999998 6777778877765
No 246
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.54 E-value=0.0033 Score=42.64 Aligned_cols=82 Identities=24% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhCCCC-CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 017109 133 YFLQGKLAEAEKLFLSALQEAKEGFGER-DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFH 211 (377)
Q Consensus 133 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 211 (377)
....|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++++++.++.. |......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4678999999999999999877653222 124567788999999999999999999999999999873 3444445555
Q ss_pred HHHHH
Q 017109 212 NLGQF 216 (377)
Q Consensus 212 ~la~~ 216 (377)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44443
No 247
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.53 E-value=0.00034 Score=37.64 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 335 AAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 335 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++..||.+|..+|++++|+.+|++++.+..+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999877664
No 248
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0012 Score=51.84 Aligned_cols=110 Identities=16% Similarity=0.092 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC---CHH-------HHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD---SMT-------CIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
..++..-|+-++..|+|.+|...|.+|+...+...... .+. ..-.+.+.+.|++..|++-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999998766543221 121 22356789999999999999999999888
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.. +|....+++..|..+...=+.++|..-+.+++++.+.+
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 76 46668999999999999999999999999999876554
No 249
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0031 Score=49.54 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC---CCCHh-------HHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG---ERDPH-------VASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
....++..-|+-++..|+|.+|...|+.|+...+...- +..|. ....+.+++.|+...|+|-+++++...
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34577889999999999999999999999987665421 22222 345678999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.+.. ++....+|+..|......-+.++|..-+.+++++-
T Consensus 256 iL~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 256 ILRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 9886 55567899999999999999999999999999884
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.44 E-value=0.00046 Score=37.11 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
++.+||.+|..+|++++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3678999999999999999999999877644
No 251
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.027 Score=45.52 Aligned_cols=190 Identities=9% Similarity=0.015 Sum_probs=129.2
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHH----HHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKI----LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..+++-....+++++|+..|.+.+.- -++. ....-.+..+++.+|...|++..-.+......+.......
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-- 80 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-- 80 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc--
Confidence 45666677788999999999888764 1111 1122457789999999999988776666665555433221
Q ss_pred ChhHHHHHHHHHH-HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 245 NIDYADTMYHLAT-VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 245 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
+....+...+-. .-.....++.-+..+...++...+.. ........-..+..++.+.|+|.+|+......+.-.++
T Consensus 81 -~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 81 -PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred -hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 333333333322 22334567778888888887765532 22233344567888999999999999999998888777
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 369 (377)
..+. +....++..-+.+|....+..++...+..|......++-|
T Consensus 158 ~DDK--~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP 201 (421)
T COG5159 158 YDDK--INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP 201 (421)
T ss_pred hcCc--cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Confidence 6443 4457777778899999999999888888777766665544
No 252
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0023 Score=55.32 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=105.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh--HHH
Q 017109 131 RDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR--IGV 208 (377)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~ 208 (377)
..+....+..-+..-.+.+..+ ......++..-+..++..|++.+|.+.+...-- .+...+...+. ...
T Consensus 214 r~llq~~~Lk~~krevK~vmn~--------a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~ci 284 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNI--------AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCI 284 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhh--------cCCCcHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhhe
Confidence 3344444444444444444443 123456677788899999999999888765322 11111111222 344
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCC---C------ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALK-IKGRVLGH---G------NIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.++++|.+++.+|.|.-+..+|.+|+. .+.++... . ......++++.|..|...|++-.|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 568999999999999999999999996 44433211 0 1123568899999999999999999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVK 303 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~ 303 (377)
+...+ ..|..+|.++..
T Consensus 365 fh~nP--------rlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNP--------RLWLRLAECCIM 381 (696)
T ss_pred HhcCc--------HHHHHHHHHHHH
Confidence 76542 457778887764
No 253
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.42 E-value=0.00014 Score=38.44 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHH
Q 017109 145 LFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEP 186 (377)
Q Consensus 145 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 186 (377)
+|++++++ +|....+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788887 89999999999999999999999863
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.40 E-value=0.00046 Score=39.14 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLAT 257 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (377)
.++..+|..|...|++++|++.|+++++.. |+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCCHHHHHHhhh
Confidence 467889999999999999999999999985 666677777764
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.37 E-value=0.00068 Score=35.89 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQE 152 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 152 (377)
+.+++.+|.++...|++++|+..|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 367999999999999999999999999998
No 256
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.0055 Score=51.17 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
+|..+.....+.+..+.|..+|.+|.+. ......+|...|.+-+. .++.+.|...|+.+++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------
Confidence 4556667777777799999999999742 22234678888888666 566677999999999987
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
+.....+......+...|+.+.|..+|++++.... .....-.+|......-...|+.+....+.+++.+....
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~-----~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSLP-----KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS-----CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 55556677777888999999999999999987521 12213456777788888889999999999888877533
No 257
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.064 Score=44.57 Aligned_cols=229 Identities=12% Similarity=0.081 Sum_probs=153.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHh----HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPH----VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...+......+++++++..+...+...+.. ..++. .-.....+|.++...|+..+-.......-.......
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~--~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~--- 82 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGA--SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS--- 82 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccc--cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---
Confidence 445555666777888999988888753222 11222 345678999999999999988777777666655442
Q ss_pred chhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYL-VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
.+..+.....+-.... .-+..+.-+..+..+++...+.... ...-..-..+..+|...++|.+|+......+.-.++
T Consensus 83 KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt--FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK 160 (411)
T KOG1463|consen 83 KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT--FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK 160 (411)
T ss_pred hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 2333333333333333 3355667788888888887542111 122334456889999999999999999999888888
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT-VIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
.. +......++..=..+|....+..+|...+..|-......+-+ |.. +..-..-|.++....+|..|..||=++.
T Consensus 161 lD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAf 236 (411)
T KOG1463|consen 161 LD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAF 236 (411)
T ss_pred cc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHHHH
Confidence 75 555556666666788889999999988888777665444322 322 2222333566677789999999999998
Q ss_pred HHHHhh
Q 017109 361 EARKKL 366 (377)
Q Consensus 361 ~~~~~~ 366 (377)
+-+..+
T Consensus 237 Egf~s~ 242 (411)
T KOG1463|consen 237 EGFDSL 242 (411)
T ss_pred cccccc
Confidence 876654
No 258
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.35 E-value=0.00043 Score=36.69 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
+.++..+|.++..+|++++|+.++++++++.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999754
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.34 E-value=0.017 Score=50.50 Aligned_cols=130 Identities=22% Similarity=0.185 Sum_probs=93.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC------
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS------ 287 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------ 287 (377)
..-.++..+...-++.-++|+++. ++.+.+|..|+.-. ..-..+|.++++++++..+...+.+.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 334455667777888888898886 66677777666422 23467888888888887665543211
Q ss_pred -----------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 288 -----------MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 288 -----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
.....+...+|.+..++|+.++|++.++..++... ..+...+..+|..++...+.+.++...+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 11244567799999999999999999999887532 1133678889999999999999888777
Q ss_pred HHH
Q 017109 357 ERC 359 (377)
Q Consensus 357 ~~a 359 (377)
.+.
T Consensus 319 ~kY 321 (539)
T PF04184_consen 319 AKY 321 (539)
T ss_pred HHh
Confidence 664
No 260
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.32 E-value=0.093 Score=45.65 Aligned_cols=116 Identities=13% Similarity=0.003 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH-HHHhc
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH-IMESS 324 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~ 324 (377)
......+...+.+..+.|.++.|...+.++........ .....+....+.+....|+..+|+..++..+. .....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~----~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE----SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc----CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 34566788899999999999999999998876532211 11334456678999999999999999998887 32222
Q ss_pred -------------------------cCCCChhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHh
Q 017109 325 -------------------------KGWNSLDTVIAAEGLALTLQST------GSLMEAQELFERCLEARKK 365 (377)
Q Consensus 325 -------------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~ 365 (377)
........+.++..+|...... +..+++...|+++..+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 1111233567777888887777 8889999999999887654
No 261
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.32 E-value=0.027 Score=51.68 Aligned_cols=169 Identities=22% Similarity=0.193 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CC--------------CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEG---FG--------------ERDPHVASACNNLAELYRVKKAFDKAEPLYL 189 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~--------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 189 (377)
..-|..+...|+++.|+..|-++-.+.+.+ .+ .+.......|-.++.-|...|+|+.|.++|.
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHH
Confidence 345666777888888888776554332211 00 1111222344556777777888888877776
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHH
Q 017109 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSE 269 (377)
Q Consensus 190 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (377)
++-.. ..-...|.+.|+++.|...-.++. ++ ......|...+.-+-..|+|.+|.
T Consensus 790 e~~~~----------------~dai~my~k~~kw~da~kla~e~~-------~~--e~t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 790 EADLF----------------KDAIDMYGKAGKWEDAFKLAEECH-------GP--EATISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred hcchh----------------HHHHHHHhccccHHHHHHHHHHhc-------Cc--hhHHHHHHHhHHhHHhhcchhhhh
Confidence 64322 122345667778777766555432 22 445566667777777778877777
Q ss_pred HHH------HHHHHHHHHcCCCCC----------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 270 ALF------LESIRILEENGEGDS----------MTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 270 ~~~------~~al~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
++| .+++.++.+.+..++ .....+...+|.-+...|+...|...|-++-+.
T Consensus 845 qlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 845 QLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred heeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 765 355666555543322 123445677888899999999998888776544
No 262
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.31 E-value=0.034 Score=52.04 Aligned_cols=190 Identities=16% Similarity=0.105 Sum_probs=114.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...+++.+|.....+.++. +|....+...-|.+..++|+.++|..+++..-.. ++++ -.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-----~~~D---~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL-----KGTD---DLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-----CCCc---hHHHHHH
Confidence 4567888999988888876 6777777777888999999999999655543322 2222 3567778
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
-.+|..+|++++|..+|+++.... |. -..+..+=.+|.+.+.|.+-.+. ++++.+..+ ..+...
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~p--k~~yyf-- 147 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNFP--KRAYYF-- 147 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCC--cccchH--
Confidence 899999999999999999998875 44 45555666677777777654433 333333322 233332
Q ss_pred HHHHHHHHHHhCChhHHHH-----HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017109 294 LRYLAQTYVKANRLTDAET-----VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFE 357 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 357 (377)
|.-+..+.......++... +-++..+..-...|. -...++. ...-.++..+|++++|...+.
T Consensus 148 WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk-~~s~aE~-~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 148 WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK-IESEAEI-ILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc-cchHHHH-HHHHHHHHhcccHHHHHHHHH
Confidence 3334444444444444333 112222111111121 1111222 222346677788888888774
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.26 E-value=0.0012 Score=34.81 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+.++..+|.++...|++++|+.++++++++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999998
No 264
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.076 Score=44.15 Aligned_cols=210 Identities=15% Similarity=0.138 Sum_probs=136.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
+..+.-+..+..+++.+.+. ......-..-..+..+|...++|.+|+......+.-.++. +|......++..-+..
T Consensus 102 ~~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~ 177 (411)
T KOG1463|consen 102 DGTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKA 177 (411)
T ss_pred CCcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHH
Confidence 34445566666666655443 1111123344568889999999999999999999888886 3566667788888999
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDY-ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
|....+..+|...+..|........-| |.. +..-..-|.++....+|.-|..||-++.+-+...+ ++.....++.
T Consensus 178 y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLK 253 (411)
T KOG1463|consen 178 YHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLK 253 (411)
T ss_pred HHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHH
Confidence 999999999999988887766555444 433 33334446667777899999999999999877765 4444444555
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST--GSLMEAQELFERCL 360 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al 360 (377)
.+-.+-...+..++--..+..=..+. ..| ....++..++..+... .+|+.|+.-|+.-+
T Consensus 254 YMlLcKIMln~~ddv~~lls~K~~l~--y~g----~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 254 YMLLCKIMLNLPDDVAALLSAKLALK--YAG----RDIDAMKAVAEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred HHHHHHHHhcCHHHHHHHHhhHHHHh--ccC----cchHHHHHHHHHhcCCcHHHHHHHHHHhHHHH
Confidence 55555555666666444443222221 111 1256777777777543 45666666555433
No 265
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0049 Score=50.73 Aligned_cols=107 Identities=18% Similarity=0.098 Sum_probs=92.2
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
...+..+..-|+-|+...+|..|...|.+.++.- .++....+..|.|.|-+....|+|..|+.-..+++.+-
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~---- 149 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK---- 149 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 3467888889999999999999999999999862 23445567899999999999999999999999999884
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
|....+++.-|.++....++++|..+++..+.+..
T Consensus 150 ----P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 150 ----PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred ----cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 77788899999999999999999999998877643
No 266
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.24 E-value=0.00066 Score=35.92 Aligned_cols=31 Identities=32% Similarity=0.245 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.++..+|.++..+|++++|+.++++++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999999999754
No 267
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.13 Score=45.56 Aligned_cols=223 Identities=15% Similarity=-0.005 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+-....-+..+...|+.+.|+.+++.+++. .. .......++.+|.++..+.+|..|...+....+..
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~~--~~----kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des------- 333 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIPI--RM----KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES------- 333 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhcccH--HH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------
Confidence 345566777888888888889999888872 11 23446678889999999999999999988877752
Q ss_pred chhHHHHHHHHH-HHHH--------HccCHHHHHHHHHHHHHHHHHhcCCCChh--------------------HHH--H
Q 017109 203 DIRIGVAFHNLG-QFYL--------VQRKLEDACTYYERALKIKGRVLGHGNID--------------------YAD--T 251 (377)
Q Consensus 203 ~~~~~~~~~~la-~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------------~~~--~ 251 (377)
+...+ .|..++ -++. ..|+-++|..+++...+..... +.+.|. ... -
T Consensus 334 dWS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P 411 (546)
T KOG3783|consen 334 DWSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASP 411 (546)
T ss_pred hhhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc-cccCchhHHHHHHHHHHhccccccccccccch
Confidence 11111 222222 3322 2346666666666555444321 111110 111 1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..++.++..-.. -+..-..+...-.......+.....--+..+|.++..+|+...|..++...++. ......+..-
T Consensus 412 ~~El~Y~Wngf~~--~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~ 488 (546)
T KOG3783|consen 412 YYELAYFWNGFSR--MSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWA 488 (546)
T ss_pred HHHHHHHHhhccc--CChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhcccccc
Confidence 2333333322111 111112222222222222244445555677899999999999999999998866 3333344455
Q ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGS-LMEAQELFERCLEAR 363 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 363 (377)
.+.+++.+|.++..+|. ..++..++.+|-+..
T Consensus 489 ~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 489 VPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred ccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 68899999999999999 999999999997743
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.13 E-value=0.00037 Score=36.84 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 230 YERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 230 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
|++++++. |....+++++|.+|...|++++|++
T Consensus 2 y~kAie~~--------P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELN--------PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHC--------CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 67888884 8889999999999999999999863
No 269
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.09 E-value=0.0065 Score=50.75 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
+|..+.....+.+..+.|...|.+|++. ......+|...|.+... .++.+.|...|+.+++.+. .+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CC
Confidence 4556667777777899999999999732 33456778888888666 5666669999999998743 23
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
...+......+...|+.+.|..+|++++.... . ......++......-...|+.+....+.+++.+.++.
T Consensus 70 ---~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~----~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 70 ---PDFWLEYLDFLIKLNDINNARALFERAISSLP----K-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS----C-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred ---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC----c-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 34555566778889999999999999987631 1 1113456777778888889999999999888887544
No 270
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.09 E-value=0.0017 Score=34.33 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.++..+|.+|..+|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999999765
No 271
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.08 E-value=0.015 Score=43.79 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH---hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF---DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 139 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
|+.|.+.++..... +|..++.+++-|.++..+.++ .++.+.++.++.-++.... -+|....++.++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 45566666665554 677788888888877776555 3355555555554443221 14555688999999
Q ss_pred HHHHccC----HHHHHHHHHHHHHHHH
Q 017109 216 FYLVQRK----LEDACTYYERALKIKG 238 (377)
Q Consensus 216 ~~~~~g~----~~~A~~~~~~al~~~~ 238 (377)
+|...+. ..+|..+|++|.+.++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 9887653 3455566666655554
No 272
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.06 E-value=0.22 Score=46.94 Aligned_cols=192 Identities=14% Similarity=-0.005 Sum_probs=109.1
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
.+.+++..|....-+.+. .+|...-+...-|..+.+.|+.++|..+++..-.. .+..-.++..+-
T Consensus 20 ld~~qfkkal~~~~kllk-------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--------~~~D~~tLq~l~ 84 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLK-------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--------KGTDDLTLQFLQ 84 (932)
T ss_pred hhhHHHHHHHHHHHHHHH-------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--------CCCchHHHHHHH
Confidence 344555555555544443 45555666777788999999999999555433221 222456677788
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.+|..+|++++|..+|++++.. .|. -.....+=.+|.+.++|.+-.+.- +++++.. +..+. ..|
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa---~~LyK~~--pk~~y--yfW 148 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAA---LQLYKNF--PKRAY--YFW 148 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhC--Ccccc--hHH
Confidence 9999999999999999999986 222 344555666777777665533322 3333211 21222 234
Q ss_pred HHHHHHHHHcCChhhHHH-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEA-----LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
..++.+.......++... +.++..+..-+.++ .-........ .-.++..+|++++|.+.+..-
T Consensus 149 sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~ 216 (932)
T KOG2053|consen 149 SVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEIIL-YLLILELQGKYQEALEFLAIT 216 (932)
T ss_pred HHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHHH-HHHHHHhcccHHHHHHHHHHH
Confidence 444555555555554443 22233222222111 1112222221 234566789999999988543
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.98 E-value=0.17 Score=42.33 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=96.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHH-hc-CCC----chh
Q 017109 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-AFDKAEPLYLEAIKILQE-SF-GPE----DIR 205 (377)
Q Consensus 133 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-~~-~~~----~~~ 205 (377)
.+..|+++.|..++.++-.......+......+..+++.|......+ +++.|..+++++.++++. .. ... ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999887653322223456889999999999999 999999999999999755 11 111 134
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
...++..++.+|...+.++...+ ..++++...... ++++. .+..--.+....++.+++.+.+.+++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~-~~~~~---~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEY-GNKPE---VFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC-CCCcH---HHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 56788899999999988764444 333344443322 22232 2322223333478888888888887764
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.94 E-value=0.0031 Score=33.28 Aligned_cols=30 Identities=37% Similarity=0.658 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.++..+|.+|...|++++|..+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999986
No 275
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.90 E-value=0.032 Score=35.46 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
.-....|.-++...+.++|+..++++++.. .+.+....++-.+..+|...|+|.+.+.+..+-+++.+...
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344556767778999999999999999864 44567888999999999999999999999999888877764
No 276
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.89 E-value=0.2 Score=43.41 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=110.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC---------------------CCCHhHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG---------------------ERDPHVASACNNLAELYR 176 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~~~~~~~~la~~~~ 176 (377)
.+|..++++.+++.++..+|+...|.+++++|+-..+.... ..+.....++........
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999987764311 123345567777788899
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPE-DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
+.|-+..|.++.+-.+.+ +|. +| .-+...+-....+.++|+--++.++.......+. .....+...+..
T Consensus 115 ~RG~~rTAlE~~KlLlsL-----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSL-----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred hcCcHHHHHHHHHHHHhc-----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 999999999999998887 444 44 3455566666777888877777777654421100 001123455667
Q ss_pred HHHHHHcCCh---------------hhHHHHHHHHHHHHHH
Q 017109 256 ATVLYLQGKE---------------NDSEALFLESIRILEE 281 (377)
Q Consensus 256 a~~~~~~g~~---------------~~A~~~~~~al~~~~~ 281 (377)
+.++...++- ++|...+.+|+..++.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 7777777777 8999999999887543
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.16 Score=46.51 Aligned_cols=183 Identities=19% Similarity=0.206 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHH------
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQE-----AKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEA------ 191 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------ 191 (377)
.+.|..++......-.++-|+..|-++-.. .++. .....--...+.+-..-|+|++|++.|-.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh
Confidence 367777888888887888888887765432 1111 000011123345555567788777776432
Q ss_pred HHHHHHh--------------cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH------------------H
Q 017109 192 IKILQES--------------FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG------------------R 239 (377)
Q Consensus 192 l~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------~ 239 (377)
+++..+. .+.++...-.++.++|..+..+-.+++|.++|.+.-.... .
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~ 846 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLAR 846 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHH
Confidence 3322221 1234566778999999999999999999999876532211 1
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHH-------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALF-------------------LESIRILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------------------~~al~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
...+++ ..+-.+|..+...|.-++|.+.+ .+++++.+... -+.........+.-
T Consensus 847 ~Lpe~s----~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~---l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 847 TLPEDS----ELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQ---LPQVQTLIAKQAAQ 919 (1189)
T ss_pred hcCccc----chHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHH
Confidence 122222 23344555555555555555444 23444444432 22222233334445
Q ss_pred HHHhCChhHHHHHHHHH
Q 017109 301 YVKANRLTDAETVQRKI 317 (377)
Q Consensus 301 ~~~~g~~~~A~~~~~~a 317 (377)
+...++.-+|++..+++
T Consensus 920 ll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHhhcchHHHHHHhhhc
Confidence 55667777787777766
No 278
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.3 Score=42.17 Aligned_cols=195 Identities=9% Similarity=-0.057 Sum_probs=135.7
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+-....+....-+.++....++..|...+.+..-.+.+. ........+...++.++.+.+..-.+..+.-.++....+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 344556777778999999999999999999887665543 234556778888899998888888888887777766654
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHHHHHhCChhHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCI-----RRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
..-+ ......-..++......|..+.|...+..++....-.++-+....+ .++...+..+ ...+.+.+.+++
T Consensus 346 y~ld--yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L 422 (482)
T KOG4322|consen 346 YSLD--YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL 422 (482)
T ss_pred hccc--hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence 3222 3345566778888999999999999999999876665532221110 0111111111 456778888888
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHH
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM---EAQELFERCLE 361 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 361 (377)
+++-.++.+.. .+....++.+.++..|-..|+.+ ++...|+++..
T Consensus 423 ~~A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 423 DLAQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 88888887763 34456888899999999999875 44455555544
No 279
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.77 E-value=0.0053 Score=33.12 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 370 (377)
.++..||.+-...++|++|..-|++++++.+++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4678899999999999999999999999999988763
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.74 E-value=0.21 Score=46.33 Aligned_cols=180 Identities=19% Similarity=0.123 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh-----cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 017109 138 KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK-----KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHN 212 (377)
Q Consensus 138 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 212 (377)
+...|..+++.+.+. ....+...+|.+|..- .|.+.|+.+++.+.+...+.- ......+.+.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 356778888777654 3455666777776654 689999999999988322110 1112346788
Q ss_pred HHHHHHHcc-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChhhHHHHHHHHHHHHHHcCC
Q 017109 213 LGQFYLVQR-----KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG---KENDSEALFLESIRILEENGE 284 (377)
Q Consensus 213 la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 284 (377)
+|.+|.... ++..|..++.++.+.- ...+.+.+|.++.... +...|.++|..|.+.
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g----------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAELG----------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhcC----------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 999998853 6788999999887652 2456778888887765 567899999988764
Q ss_pred CCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST-GSLMEAQELFERC 359 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 359 (377)
....+.+.++.+|.. .-+...|..++.++.+.- + +.+...++.++.-. +.++.+...+...
T Consensus 358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-------N---PSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-------C---hhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 123446778887764 247788999999887752 1 33444444444332 6665555554443
Q ss_pred H
Q 017109 360 L 360 (377)
Q Consensus 360 l 360 (377)
.
T Consensus 424 a 424 (552)
T KOG1550|consen 424 A 424 (552)
T ss_pred H
Confidence 3
No 281
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.69 E-value=0.29 Score=42.47 Aligned_cols=156 Identities=12% Similarity=-0.008 Sum_probs=106.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---------------------CCChhHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG---------------------HGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~ 261 (377)
+|....++..++.++..+|+.+.|.+++++|+-..+.... ..+.....+.......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 5566789999999999999999999999999877663211 1123344566777788889
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 017109 262 QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLAL 341 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 341 (377)
.|-+..|.++.+-.+.+.+. ++|.- +...+-....+.++++--++.++.......+. .........+..+.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~----~DP~g--~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPD----EDPLG--VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIAL 186 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCC----CCcch--hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHH
Confidence 99999999999988887322 13322 23444555566777776666666544321100 00012345566777
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHHHHhhC
Q 017109 342 TLQSTGSL---------------MEAQELFERCLEARKKLM 367 (377)
Q Consensus 342 ~~~~~g~~---------------~~A~~~~~~al~~~~~~~ 367 (377)
++...++. ++|...+.+|+...+.+.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 77777777 899999999998776543
No 282
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.69 E-value=0.04 Score=41.50 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017109 181 FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL---EDACTYYERALKIKGRVLGHGNIDYADTMYHLAT 257 (377)
Q Consensus 181 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (377)
|+.|.+.++..... +|.....+++-|..+..+.++ .++..+++.++.-++....- +|....++.++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 45566666665554 344466777777777665443 33444444444333221110 2777889999999
Q ss_pred HHHHcC----ChhhHHHHHHHHHHHHH
Q 017109 258 VLYLQG----KENDSEALFLESIRILE 280 (377)
Q Consensus 258 ~~~~~g----~~~~A~~~~~~al~~~~ 280 (377)
++...+ +..+|..+|+++...++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 988765 34456666666665544
No 283
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.48 Score=43.14 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
-..+.+-|.-+++..+|..+++.|...+....... .+...+.....++.||....+.+.|.+++++|-+..
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~--~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------- 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN--YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------- 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence 34566778888899999999999999988765543 233457788899999999999999999999998763
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|........+..+....|+-++|+...........+
T Consensus 425 -~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 -RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 333556666777888899999999998887776554
No 284
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.21 Score=43.08 Aligned_cols=187 Identities=12% Similarity=-0.041 Sum_probs=132.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+-....+..+..+.++....++..|...+++..-.+.+. ........++..++.++...+....+..+.-.++....+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 344455667778888888888888888888877554332 334456778888888998888888888888888777665
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHHHHHcCChhhHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY-----ADTMYHLATVLYLQGKENDSEALF 272 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~ 272 (377)
.. .+...+..-..++......|..+.|...+..++....-.++-+.... +.++..-+..+ ...+.+.+.+++
T Consensus 346 y~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L 422 (482)
T KOG4322|consen 346 YS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL 422 (482)
T ss_pred hc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence 42 23344566778899999999999999999999987754443321110 11111111111 556788889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 273 LESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
+++-..+.+.+ -+.....+.+.++..|-..|+.++=.
T Consensus 423 ~~A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn 459 (482)
T KOG4322|consen 423 DLAQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERN 459 (482)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHH
Confidence 99999888876 56667788888999999999986533
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.3 Score=40.10 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..-...+.-....|++.+|...+..++.. .+....+...++.+|...|+.+.|...+...-.-.. +.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-----~~ 201 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-----DK 201 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-----hh
Confidence 33455667788999999999999999987 566688899999999999999999888766322111 01
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
. .......-..+.+.....+....-+++ .. +|....+-+.++..+...|+.++|.+.+-..++.
T Consensus 202 ~--~~~l~a~i~ll~qaa~~~~~~~l~~~~-aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 202 A--AHGLQAQIELLEQAAATPEIQDLQRRL-AA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred H--HHHHHHHHHHHHHHhcCCCHHHHHHHH-Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 111111112222222222222222221 11 2666788899999999999999999988776654
No 286
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.61 Score=45.02 Aligned_cols=171 Identities=18% Similarity=0.095 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..+|..+|.+....|...+|++.|-++- +| ..|...-.+..+.|.|++-+.++.-+.+..++..-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad----------Dp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id- 1169 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD----------DP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID- 1169 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC----------Cc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch-
Confidence 4578889999999999999988887652 32 467777788888899999888887776554321100
Q ss_pred ChhHHHHH---------------------HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 017109 245 NIDYADTM---------------------YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK 303 (377)
Q Consensus 245 ~~~~~~~~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 303 (377)
.....++ ...|.-++..|.|+.|.-+|.. ..-+..|+..+..
T Consensus 1170 -~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV~ 1232 (1666)
T KOG0985|consen 1170 -SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLVY 1232 (1666)
T ss_pred -HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHHH
Confidence 1111111 1122223333333333322221 1225567778888
Q ss_pred hCChhHHHHHHHHHHHHH--H---------------hccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 304 ANRLTDAETVQRKILHIM--E---------------SSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 304 ~g~~~~A~~~~~~al~~~--~---------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.|+|..|.+..++|-... + +..|-+-.-.++-+..+...|...|-+++-+..++.++-+.+..
T Consensus 1233 LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1233 LGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 889988888777764321 0 11121111134556677888999999999998888887765543
No 287
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.50 E-value=0.1 Score=33.26 Aligned_cols=70 Identities=10% Similarity=-0.030 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
...-|.-++...+.++|+..++++++.. .+.+....++..+..+|...|+|.+.+++.-+-+++.++...
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3444555668889999999999999873 345667788999999999999999999999888888766543
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.31 E-value=0.0055 Score=31.95 Aligned_cols=31 Identities=29% Similarity=0.208 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
++++.+|.++...|++++|...++++++.+|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3678899999999999999999999998544
No 289
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.31 E-value=0.0058 Score=52.94 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.-..+...+.-+.|+.|+..|.+|+++ +|..+..+.+.+.++...+++..|+.-+.++++. +|.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~ 70 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPT 70 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cch
Confidence 334566778889999999999999998 7778888888889999999999999999999997 577
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
...+|...|......+++.+|...|++...+.
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 78999999999999999999999999887774
No 290
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.9 Score=41.51 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..++.+-|.-.+...+|..++++|...+...... ..+...+....+++.+|....+.|.|.+++++|-+.-
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------- 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------- 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence 3455666777888899999999999999875432 1244557888999999999999999999999998774
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|...-....+..+....|.-++|+............
T Consensus 425 -~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 -RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 444455556667777789999999999888776544
No 291
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.24 E-value=0.3 Score=44.46 Aligned_cols=129 Identities=14% Similarity=0.091 Sum_probs=56.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 208 (377)
++..+...|++.+|-+.|.+.=...+.. .-..-.-++..+.-+...|..++-....++-.+-..... .|.
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAl----EmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k---ePk--- 707 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRAL----EMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK---EPK--- 707 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHH----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC---CcH---
Confidence 4555666666666666665432110000 000011123344445555555544444444333333221 121
Q ss_pred HHHHHHHHHHHccCHHHHHHHH------HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYY------ERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
.-+..+...|+.++|+... +-++++.+++. ......+..++..+.....+.-|.+.|.+
T Consensus 708 ---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 708 ---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred ---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 2355666777777777653 33444444331 11223334444444444445545444443
No 292
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.18 E-value=0.021 Score=30.86 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.++..||.+....++|++|+.-|++++++.++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 47889999999999999999999999999887654
No 293
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.07 E-value=0.0054 Score=50.73 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
..+.-.+..|.+++|++.+..++++ +|..+..+...+.++..+++...|+.-+..++++ +++.+
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa 182 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSA 182 (377)
T ss_pred HHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccc
Confidence 3455567788999999999999987 7888899999999999999999999999999987 44556
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.-|-..+.....+|++++|...+..+.++
T Consensus 183 ~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 183 KGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 77788888889999999999999988776
No 294
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.02 E-value=0.68 Score=37.95 Aligned_cols=189 Identities=9% Similarity=-0.007 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC---c-------hhHHHHHHHHHHHHHHcc--------------C
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE---D-------IRIGVAFHNLGQFYLVQR--------------K 222 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~ 222 (377)
+.+.+..++...|+..+|+.-+++=+..+....++. . ...+.=+..+|.+..... -
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 345567889999999999999999888877665441 1 111222334444444322 1
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CC-C------------------hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 223 LEDACTYYERALKIKGRVLG-HG-N------------------IDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 223 ~~~A~~~~~~al~~~~~~~~-~~-~------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
|..|..+...-.+....... |+ . +.....+................++++.+|++.+...
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 23343333332333333210 11 0 0000001111111112233456688999999998887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
+ .......+...+|.-|...|++++|.++++.+....++. |. ..-...++..+..|+...|+.+..+.+.-+.
T Consensus 172 ~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-gW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 172 G--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE-GW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred c--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6 345566667789999999999999999999997766544 22 2335678888999999999998877665443
No 295
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.01 E-value=0.69 Score=37.91 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC---C-------HhHHHHHHHHHHHHHHhc--------------C
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER---D-------PHVASACNNLAELYRVKK--------------A 180 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~ 180 (377)
+-+.+-.+++..|+..+|+.-+++=+.......+.. . ...+.-+..+|.+..... -
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 345567889999999999999999988887775441 1 112222334455444332 1
Q ss_pred HhHHHHHHHHHHHHHHHhcC-CC-ch------------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 181 FDKAEPLYLEAIKILQESFG-PE-DI------------------RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 181 ~~~A~~~~~~al~~~~~~~~-~~-~~------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
|..|-.+...--+..+.... |+ .+ .....+............-...++.+.+|++.+.+.
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 22333333222233333210 11 00 000000111111112233456688888888888765
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
... .........+|..|...|++++|..+++.+...+.+.+ .......++..+..|+...|+.+..+.+.-+
T Consensus 172 ~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg--W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 172 GQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG--WWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred ccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 432 55567778999999999999999999999988777654 4555667788889999999998876665443
No 296
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.72 Score=37.98 Aligned_cols=161 Identities=15% Similarity=0.036 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
-..-+.-....|++.+|...+..++... +....+...++.+|...|+.+.|...+...-.-.. ..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~ 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DK 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hh
Confidence 3455667778899999999999999972 22257888999999999999999888876322211 11
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
..........++.+.....+....-.++-. .|.....-..+|..+...|++++|.+.+-..+.. ..+.
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~ 269 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLAA---------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGF 269 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cccc
Confidence 111111112334444444443333333221 2333455678999999999999998887666554 3333
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
.+ ..+...+-.++...|.-+.+...+++
T Consensus 270 ~d---~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 270 ED---GEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cC---cHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 33 34555666777777755544444443
No 297
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.71 Score=38.45 Aligned_cols=131 Identities=13% Similarity=0.154 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 017109 225 DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304 (377)
Q Consensus 225 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (377)
+-++-+.+.++-.++..|+ .....++.+.|..|.+.|+-+.|.+.+.+..+..-..+ ...+.......+|..|..
T Consensus 82 eki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D- 156 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLD- 156 (393)
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhcc-
Confidence 3455556666666655555 66788999999999999999999999999887665554 445555556677777754
Q ss_pred CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 305 NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 305 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.+--.+..+++-.+.++-++++......+|. |.......++.+|...|-.++..+.
T Consensus 157 --~~lV~~~iekak~liE~GgDWeRrNRlKvY~--Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 157 --HDLVTESIEKAKSLIEEGGDWERRNRLKVYQ--GLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred --HHHHHHHHHHHHHHHHhCCChhhhhhHHHHH--HHHHHHHHhHHHHHHHHHHHccccc
Confidence 4444455666666666655555544444444 3444556788888888877766543
No 298
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.94 E-value=1.2 Score=40.01 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=97.9
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHH
Q 017109 181 FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA-TVL 259 (377)
Q Consensus 181 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~ 259 (377)
++....++++.+.+.. .....++.++-..-.+..=...|...|.++-+.-.. + -.++..-| .-|
T Consensus 347 ~~~~~~~~~~ll~~~~-------~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~------~--hhVfVa~A~mEy 411 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIED-------IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT------R--HHVFVAAALMEY 411 (656)
T ss_pred hhhhHHHHHHHHhhhc-------cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC------c--chhhHHHHHHHH
Confidence 5556666666666522 222344555555555555566777777776554311 1 12222222 235
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 017109 260 YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGL 339 (377)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 339 (377)
...++..-|...|+-.++.+. +.+.... .....+...|+-..|..+|++++.. .... .....+|..+
T Consensus 412 ~cskD~~~AfrIFeLGLkkf~-----d~p~yv~---~YldfL~~lNdd~N~R~LFEr~l~s---~l~~--~ks~~Iw~r~ 478 (656)
T KOG1914|consen 412 YCSKDKETAFRIFELGLKKFG-----DSPEYVL---KYLDFLSHLNDDNNARALFERVLTS---VLSA--DKSKEIWDRM 478 (656)
T ss_pred HhcCChhHHHHHHHHHHHhcC-----CChHHHH---HHHHHHHHhCcchhHHHHHHHHHhc---cCCh--hhhHHHHHHH
Confidence 668999999999999888632 4444443 3345667789999999999998875 1111 1235677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 340 ALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 340 a~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
-..-..-|+....++.-++-...++
T Consensus 479 l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 479 LEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhcc
Confidence 7777788998888888777776666
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.93 E-value=0.0087 Score=31.16 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
+++.+|.++...|++++|+..++++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 67899999999999999999999998864
No 300
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.8 Score=37.51 Aligned_cols=136 Identities=12% Similarity=0.070 Sum_probs=86.6
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 221 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
+.-++-++-+.+.++-.+...|+ .....++.++|..|.+.++.+.+.+++.+.++-.-..+ -......+...+|.+
T Consensus 89 kkneeki~Elde~i~~~eedngE--~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~ 164 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGE--TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLI 164 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHh
Confidence 34455566666666665554444 56688999999999999999999999999887766654 334455555667777
Q ss_pred HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 301 YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|..+.=.++. ++.+-.+.++-.+++......+| .|.......++.+|...+...+..+.+
T Consensus 165 y~d~~vV~e~---lE~~~~~iEkGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 165 YGDRKVVEES---LEVADDIIEKGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred hccHHHHHHH---HHHHHHHHHhCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 7555444444 44444444444444333333343 344555667888888887776665443
No 301
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.86 E-value=0.93 Score=38.26 Aligned_cols=165 Identities=18% Similarity=0.112 Sum_probs=108.2
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQ----GKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
..+++..+...+..+-... .......++..|... .+..+|..+|+.+.+ .....+.+
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~ 113 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALF 113 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHH
Confidence 3455555555555544311 115566677776554 467888888885543 34466777
Q ss_pred HHHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHHHH
Q 017109 170 NLAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR-------KLEDACTYYERALKIKG 238 (377)
Q Consensus 170 ~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~ 238 (377)
.||.+|.. ..+..+|..+|+++.+. + ++.-..+...++..|..-+ +...|...|.++....
T Consensus 114 ~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 114 NLGLMYANGRGVPLDLVKALKYYEKAAKL-----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred hHHHHHhcCCCcccCHHHHHHHHHHHHHc-----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 89998887 45899999999999886 2 2211345777888777642 2236777777766552
Q ss_pred HhcCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC
Q 017109 239 RVLGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKAN 305 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (377)
...+...+|.+|.. ..++.+|..+|.++-+. .+ ......++ ++...|
T Consensus 186 ---------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 ---------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred ---------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 35677888887765 34788999999999875 22 44566777 666555
No 302
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.82 E-value=1.1 Score=38.51 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 017109 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218 (377)
Q Consensus 139 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 218 (377)
.+.-+.++++|++. +|.....+..+-.+.....+.++..+-+++++.. .+..+.+...|...-....
T Consensus 47 ~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHh
Confidence 34566777777765 3444445555555555666777777777777776 3445555555555545445
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 219 VQRKLEDACTYYERALKIKGRVLGHG----------NIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
..-.++.....|.+++.......... ......++..++......|..+.|+..++-.+++
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 55678899999999998876553332 1234566777888889999999999999999887
No 303
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=95.68 E-value=1.5 Score=39.17 Aligned_cols=181 Identities=14% Similarity=0.037 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHHHH
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL-------EDACTYYERALKIKG 238 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~ 238 (377)
.....+|+.++..|+|+-|...|+.+.+-+... ......+.+.-..|.+....+.. ++...+++.++..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 456779999999999999999999988865431 12334455666666666666643 477788888888776
Q ss_pred HhcC---CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHH--HHhCChhHHHH
Q 017109 239 RVLG---HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE-ENGEGDSMTCIRRLRYLAQTY--VKANRLTDAET 312 (377)
Q Consensus 239 ~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~ 312 (377)
+... ........+....+.++...|.+.+|...+-+.....- +.. .....+..+..+|.++ ...+....-..
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l--~~~~~alllE~~a~~~~~~~~~~~~~~~~ 364 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL--RPFGSALLLEQAAYCYASLRSNRPSPGLT 364 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh--hhHhhHHHHHHHHHhhcccccCCCCccch
Confidence 6311 11124456777788888899998888877766654421 110 0111344455556665 11101000000
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
. ....+.-+..-|.-|...|+...|..+|.+++.++..
T Consensus 365 r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 365 R---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred h---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 0 1122334444568899999999999999999998874
No 304
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.63 E-value=0.96 Score=36.70 Aligned_cols=184 Identities=11% Similarity=0.002 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+..++.+....|+|++...+.++++... ......=.+.++.+|-. .|....+...+......... ..++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~---~~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN---KGNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc---cchh
Confidence 5678899999999999999999999871 11122233334444421 23333344333332222211 1011
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHHHHh-----C-----ChhHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG---DSMTCIRRLRYLAQTYVKA-----N-----RLTDAETV 313 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 313 (377)
... .+..-|.. .=-++=...+..++.+......+ +....+..+...|..|.-. | -.+.|...
T Consensus 74 ~~~----~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 74 KQV----KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 111 11111110 01122334445555554443211 1112222233344444321 1 23789999
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhh
Q 017109 314 QRKILHIMESSKGWNSLDTVIAAEGLALTL-QSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 314 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
|++|+++......+.+|.......+.+..| .-.|+.++|....+++++-.-..
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999988899998777777777766 55899999999999988876543
No 305
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.48 E-value=0.26 Score=33.94 Aligned_cols=101 Identities=15% Similarity=0.068 Sum_probs=58.3
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ----RKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
.+.-++..|++-+|++..+..+....+ +......+..-|.++..+ .+.+-=..++.-+++.+.+...- .|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 456788999999999999999876332 222235566667666544 34443334444444443322111 25
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
..+..++.+|.-+.....|+++..-.++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5566677777665555555555555555544
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.41 E-value=0.64 Score=42.93 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHH-----HHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHH------
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKI-----LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERA------ 233 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------ 233 (377)
.+.+..++..-...-.++.|+..|-+.-.. .++... ...--...+.+-..-|+|++|++.|-.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~-----i~s~~~q~aei~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRT-----IHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhh-----hhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh
Confidence 345666677666666777777766554321 111100 0001122344444456777776665432
Q ss_pred HHHHHH------------h--cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 234 LKIKGR------------V--LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 234 l~~~~~------------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
+++..+ . .+.++.....++.++|..+..+..+++|.++|.+.-
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222221 1 123344556788888888888888888888887653
No 307
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=1.4 Score=36.85 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 017109 183 KAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ 262 (377)
Q Consensus 183 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 262 (377)
+-++-+.+.++-.++..| ......++.+.|..|.+.|+-+.|.+.+++..+-.-.++.. .+.......+|..|.
T Consensus 82 eki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy~-- 155 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFYL-- 155 (393)
T ss_pred HHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhhc--
Confidence 334445555555555444 34557899999999999999999999999887665433222 444555566666664
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 263 GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
+.+--.+..+++-.+.++-+..+..+.. -..-|.......++.+|-.+|-.++..+.+.
T Consensus 156 -D~~lV~~~iekak~liE~GgDWeRrNRl--KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 156 -DHDLVTESIEKAKSLIEEGGDWERRNRL--KVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred -cHHHHHHHHHHHHHHHHhCCChhhhhhH--HHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 4444555566666666665433333333 3345667777889999999998888765443
No 308
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.36 E-value=2 Score=38.63 Aligned_cols=176 Identities=16% Similarity=0.106 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHHhc
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR---KLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 241 (377)
...+...+.++...|+...|...-.++.++++.............++.++..-...- .++....++++.+.+..
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~--- 362 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED--- 362 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc---
Confidence 344455667777777766655555555555443321111112233333333322222 25556666666666542
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
....-++.++-..-.+..-...|...|.++.+.-. .+....+...+-. |...++..-|...|+-.+..+
T Consensus 363 ----~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r------~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 363 ----IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR------TRHHVFVAAALME-YYCSKDKETAFRIFELGLKKF 431 (656)
T ss_pred ----cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC------CcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhc
Confidence 22233444555555555556777777777765311 1111222222222 446789999999999988775
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
. +.|. .-......+...++-..|..+|++++..
T Consensus 432 ~-----d~p~---yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 432 G-----DSPE---YVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred C-----CChH---HHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 2 2343 3334445667778888888888887764
No 309
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=2 Score=41.74 Aligned_cols=123 Identities=17% Similarity=0.105 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.+|..+|......|...+|++.|-++- .+..|.....+..+.|.|++-++++.-+.+..++....
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad-------------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id-- 1169 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD-------------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID-- 1169 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC-------------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--
Confidence 678999999999999999999887642 23456777788888999999999988877665443211
Q ss_pred HHHHHHH---------------------HHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 288 MTCIRRL---------------------RYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 288 ~~~~~~~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
.....++ ...|.-++..|.|+.|.-+|.. ..-+..|+..+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHHHH
Confidence 1111111 1223333344444444333332 34455677778888
Q ss_pred CCHHHHHHHHHHHHH
Q 017109 347 GSLMEAQELFERCLE 361 (377)
Q Consensus 347 g~~~~A~~~~~~al~ 361 (377)
|+|..|...-++|-.
T Consensus 1234 geyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANS 1248 (1666)
T ss_pred HHHHHHHHHhhhccc
Confidence 888888877777644
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.18 E-value=0.38 Score=35.78 Aligned_cols=88 Identities=11% Similarity=-0.000 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
.....+..+..+-...++.+++...+.-..-+. |.....-..-|.+++..|++.+|+..++.+..-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------ 73 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLRELEER------ 73 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------
Confidence 345667777778888889999988887655553 777788888999999999999999999996542
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChh
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLT 308 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~ 308 (377)
.+....+.-.++.|+..+|+.+
T Consensus 74 --~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 --APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --CCCChHHHHHHHHHHHHcCChH
Confidence 2333334455788888888763
No 311
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.16 E-value=0.58 Score=32.32 Aligned_cols=101 Identities=12% Similarity=0.108 Sum_probs=58.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh----cCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK----KAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.+..++..|++-+|++..+..+.... ++......+..-|.++..+ .+.+-=..++.-+++-+.+... -.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 46678899999999999999887632 1222235556667766554 3444444555555555444321 144
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
..+..++.+|.-+.....|+++..-.++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4455666666555444444444444444443
No 312
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.14 E-value=0.012 Score=51.02 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
-+-+.-....+.|+.|+..|.+++++ ++..+..+.+.+..+.+.+++..|+.-+.++++.. |..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--------P~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--------PTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--------chh
Confidence 34566677788999999999999998 45556778888999999999999999999999984 788
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
..+|..-|......+++.+|...|+....+.
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 8899999999999999999999999887763
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.13 E-value=0.49 Score=35.22 Aligned_cols=87 Identities=15% Similarity=-0.072 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.....+..+..+-...++.+++...+....-+ .|.....-..-|.++...|++.+|+..++....-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------ 73 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------ 73 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------
Confidence 35566777788888889999998888766655 7888888889999999999999999999996553
Q ss_pred CCchhHHHHHHHHHHHHHHccCH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKL 223 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~ 223 (377)
.+....+--.++.|+..+|+.
T Consensus 74 --~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 --APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred --CCCChHHHHHHHHHHHHcCCh
Confidence 333345666778888887775
No 314
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=2 Score=37.07 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=97.3
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHG--NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
.++.++++.+|..+-+..+.... ..... +...+..++.+..+|...|+...-...+...+....-.. +....+..
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh--d~e~qavL 211 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH--DEEGQAVL 211 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC--cchhHHHH
Confidence 34456889999888777654421 11110 122356788888899999997777777766665543322 44556666
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.+.+-+.|...+.|+.|.....++.-- .. ..+.+.+..++.+|.+..-+++|..|.+++-+|+...+
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~p--e~--~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYP--EA--ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCc--cc--cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 777888999999999888777664311 11 11224588889999999999999999999999988544
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.05 E-value=1.2 Score=34.53 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=50.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
.....+.....+|..|. ..+.++++..+.+++++.. +++...+.++..|+.++..+|+++.|--
T Consensus 136 ~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 136 PELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 34445677888888776 6789999999999999973 3324457889999999999999998853
No 316
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=94.98 E-value=5.1 Score=41.26 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC--------------------
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA-------------------- 180 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------- 180 (377)
...+....+|..+...|.+.+|+..|.+|++..+.. .|.-..+.++..++.+..-.+.
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 456778889999999999999999999999999887 6666777777766654332211
Q ss_pred ------------------------------------HhHHHHHHHHHHHHHHHhcC---C--CchhHHHHHHHHHHHHHH
Q 017109 181 ------------------------------------FDKAEPLYLEAIKILQESFG---P--EDIRIGVAFHNLGQFYLV 219 (377)
Q Consensus 181 ------------------------------------~~~A~~~~~~al~~~~~~~~---~--~~~~~~~~~~~la~~~~~ 219 (377)
...-.+.+++++..+.+... + .......+....+..+..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 11122345555555554421 0 112345566677777777
Q ss_pred cc--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 220 QR--------------------KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 220 ~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.. .-.++..++.+++...-.... ..+....+..+|.+|...|-..++--+++.++...
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~--~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLS--VEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCC--HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 677888888888876543222 25668899999999999999988888888877665
Q ss_pred H
Q 017109 280 E 280 (377)
Q Consensus 280 ~ 280 (377)
-
T Consensus 476 ~ 476 (1185)
T PF08626_consen 476 V 476 (1185)
T ss_pred c
Confidence 3
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.97 E-value=3.1 Score=38.74 Aligned_cols=133 Identities=22% Similarity=0.187 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-----CHhHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQ-----GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-----AFDKAEPLYLEAI 192 (377)
Q Consensus 123 ~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al 192 (377)
......+|.+|..- .|.+.|+.+++.+.+...+. .......+...+|.+|.... ++..|..++.++.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~---a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA---ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH---HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 34556677776654 58999999999998731111 01113447788999998853 6778999999888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCh
Q 017109 193 KILQESFGPEDIRIGVAFHNLGQFYLVQR---KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ----GKE 265 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~ 265 (377)
+. ..+ .+.+.+|.++.... ++..|.++|..|... ....+...++.+|..- -+.
T Consensus 321 ~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 321 EL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----------GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred hc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCcCCCH
Confidence 76 232 57788888888765 567899999888765 2356777888877653 467
Q ss_pred hhHHHHHHHHHHH
Q 017109 266 NDSEALFLESIRI 278 (377)
Q Consensus 266 ~~A~~~~~~al~~ 278 (377)
..|..++.++.+.
T Consensus 381 ~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 381 ELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHHHc
Confidence 8899999998875
No 318
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.83 E-value=2.1 Score=36.11 Aligned_cols=181 Identities=23% Similarity=0.208 Sum_probs=119.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh----cCHhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 017109 133 YFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK----KAFDKAEPLYLEAIKILQESFGPEDIRIGV 208 (377)
Q Consensus 133 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 208 (377)
....+++..+...+.++-.. . . ......++.+|... .+..+|..+|+.+.+. .. ..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~------~-~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-------g~---~~ 110 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL------G-D---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-------GL---AE 110 (292)
T ss_pred ccccccHHHHHHHHHHhhhc------C-C---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-------cc---HH
Confidence 34567788888888877652 1 1 25666777777653 3577788888855443 12 45
Q ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-------ChhhHHHHHHHHHH
Q 017109 209 AFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG-------KENDSEALFLESIR 277 (377)
Q Consensus 209 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~ 277 (377)
+.+.+|.+|.. ..++.+|..+|+++.+.- . +.-..+...++..|..-+ +...|...|.++-.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-----~--~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~ 183 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-----N--VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE 183 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-----C--hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence 77889999887 458999999999998763 1 211344677777776642 22367777777765
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC------
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG------ 347 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g------ 347 (377)
.. ...+...+|.+|.. ..++.+|..+|.++.+.- + ......++ ++...|
T Consensus 184 ~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 184 LG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred hc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcCCCchhh
Confidence 42 33456778877764 347899999999987651 1 55666777 555555
Q ss_pred ---------CHHHHHHHHHHHHH
Q 017109 348 ---------SLMEAQELFERCLE 361 (377)
Q Consensus 348 ---------~~~~A~~~~~~al~ 361 (377)
+...|..++..+..
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHH
Confidence 66677777766544
No 319
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.74 E-value=0.45 Score=27.99 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
++++.+|..+...|+|++|..+.+.++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46788999999999999999999999998
No 320
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=2 Score=35.33 Aligned_cols=136 Identities=18% Similarity=0.107 Sum_probs=85.0
Q ss_pred CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 180 AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 180 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
.-++-++-+.+.++-.+...| ......++.++|..|.+.++.+.+.+...+.+.-.-.++-. .+..-+...+|.+|
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~K--iDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLK--IDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc--hhhHHHHHHHHHhh
Confidence 334555556555555444432 34567899999999999999999999999988765443222 33444555666666
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 260 YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
..+.-.++.+ +.+-.+.++-+ +....-..-...|...+...++.+|-.++...+..+.+.
T Consensus 166 ~d~~vV~e~l---E~~~~~iEkGg--DWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 166 GDRKVVEESL---EVADDIIEKGG--DWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred ccHHHHHHHH---HHHHHHHHhCC--CHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 5444344444 44444444433 333333333445677777889999998888877665443
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.63 E-value=1.4 Score=34.27 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q 017109 266 NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS 345 (377)
Q Consensus 266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 345 (377)
++|...|-++-. ......+.....+|..|. ..+.++|+.++.++++...... .-.++++..|+.++..
T Consensus 123 ~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~----~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 123 QEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD----NFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHH
Confidence 556555544322 123345666778888887 5788999999999999864431 2236888999999999
Q ss_pred cCCHHHHHH
Q 017109 346 TGSLMEAQE 354 (377)
Q Consensus 346 ~g~~~~A~~ 354 (377)
+|+++.|.-
T Consensus 191 ~~~~e~AYi 199 (203)
T PF11207_consen 191 LKNYEQAYI 199 (203)
T ss_pred hcchhhhhh
Confidence 999998854
No 322
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.55 E-value=0.024 Score=47.09 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=73.8
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRY 296 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 296 (377)
.+..|.+++|++.+..++.+. |..+..+...+.++.+.++...|+.-+..++++- +....-+-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln--------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--------~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN--------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--------PDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhcccccccccC--------CchhhhcccccceeeeccCCchhhhhhhhhhccC--------cccccccch
Confidence 345677999999999999884 7778889999999999999999999999999873 333344556
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHH
Q 017109 297 LAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 297 la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.+.....+|++.+|...+..+.++
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhc
Confidence 778888899999999999998876
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.23 E-value=0.095 Score=26.42 Aligned_cols=29 Identities=41% Similarity=0.685 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.++..+|.++..+|++++|...++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 36788999999999999999999999875
No 324
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.20 E-value=3.9 Score=36.52 Aligned_cols=182 Identities=13% Similarity=-0.032 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH-------hHHHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF-------DKAEPLYLEAIKILQ 196 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~ 196 (377)
.....+|..++..|+|+-|...|+.+.+-+... ......+.+....|.+....+.. ++...+++.++..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 456779999999999999999999998765322 11233456666667666666643 377788888888777
Q ss_pred HhcC---CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHHHHH--HHcCChhhHHH
Q 017109 197 ESFG---PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG-RVLGHGNIDYADTMYHLATVL--YLQGKENDSEA 270 (377)
Q Consensus 197 ~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~ 270 (377)
+... ........+....+.++...|.+.+|...+-+.....- +...+ ...+..+-..|.++ ........-..
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~--~~~alllE~~a~~~~~~~~~~~~~~~~ 364 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP--FGSALLLEQAAYCYASLRSNRPSPGLT 364 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh--HhhHHHHHHHHHhhcccccCCCCccch
Confidence 7311 12234556777888888899998888877766655421 00000 01233344444444 11100000000
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
.....+.-+..-|.-|...|+...|..+|.+++..+...
T Consensus 365 ---------------r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 365 ---------------RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 011222233445778899999999999999999987643
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.16 E-value=0.4 Score=28.20 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQE 152 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 152 (377)
+.++.+|..+...|+|++|..+.+.++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46788999999999999999999999998
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.16 E-value=0.083 Score=26.66 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
.++..+|.++...|++++|...++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999999875
No 327
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=94.14 E-value=1.9 Score=32.79 Aligned_cols=153 Identities=13% Similarity=0.141 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 187 LYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 187 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
.|+.|.++++....++ ......+.+|..+.. .++...|++.+..+-+. ..+.+..++|.++..
T Consensus 50 nF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~ 117 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWN 117 (248)
T ss_pred HHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhcc
Confidence 3444445444443222 224556666665542 45788888888887653 234566677777654
Q ss_pred cC-----C--hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH------------------------hCChhHH
Q 017109 262 QG-----K--ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK------------------------ANRLTDA 310 (377)
Q Consensus 262 ~g-----~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------------------------~g~~~~A 310 (377)
.. + ..+|++++.++-++ . ...+...|...|.. ..+.+.|
T Consensus 118 g~~~r~~dpd~~Ka~~y~traCdl-------~---~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka 187 (248)
T KOG4014|consen 118 GEKDRKADPDSEKAERYMTRACDL-------E---DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKA 187 (248)
T ss_pred CcCCccCCCCcHHHHHHHHHhccC-------C---CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHH
Confidence 32 2 55777777776654 1 11223333333332 2344555
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhhCCCCC
Q 017109 311 ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST----GSLMEAQELFERCLEARKKLMPQDH 371 (377)
Q Consensus 311 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~ 371 (377)
..+--++-++ ..+.+..+++++|..- .+.++|..+-.++.++.+++...+.
T Consensus 188 ~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~~~ 242 (248)
T KOG4014|consen 188 LQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKNDT 242 (248)
T ss_pred HHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5555554443 2256777888888643 4678999999999999988765443
No 328
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.98 E-value=4.5 Score=36.44 Aligned_cols=185 Identities=12% Similarity=-0.004 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH-HHH--------HHhcCHhHHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA-ELY--------RVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~ 193 (377)
.-.++.+|.++....+|..|-..+....+.. ...--.|..++ -++ ...|+-++|..+.+...+
T Consensus 303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des--------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~ 374 (546)
T KOG3783|consen 303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES--------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE 374 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh--------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH
Confidence 3567788999999999999999988887762 22222222222 222 223466666666666555
Q ss_pred HHHHhcCCCchh----------------------HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 194 ILQESFGPEDIR----------------------IGVAFHNLGQFYLVQR--KLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 194 ~~~~~~~~~~~~----------------------~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
..... +.+.|. .+..+..++..+..-. ...+.. ++..........+..+..
T Consensus 375 l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~ 449 (546)
T KOG3783|consen 375 LLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEG 449 (546)
T ss_pred HHHhc-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHH
Confidence 54431 111110 0001233333322211 112222 222211111112334445
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHH
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR-LTDAETVQRKILHIM 321 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 321 (377)
--+..+|.++...|+...|..++...++.. .....+....+.+++.+|.++..+|. ..++..++.+|-+..
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 667788999999999999999999888652 22233566777889999999999999 999999999987764
No 329
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.91 E-value=0.1 Score=46.74 Aligned_cols=98 Identities=24% Similarity=0.276 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
+++..|..+...|+...|+.++..|+... .........+|+.+....|-...|-.++.+++.+.- ..|
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep 676 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-----SEP 676 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc
Confidence 34455666778899999999999998652 122344567899999999999999999999999841 223
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
..++.+|..+....+.+.|++.+++|++.-
T Consensus 677 ---l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 677 ---LTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred ---hHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 567889999999999999999999999874
No 330
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.90 E-value=1.3 Score=38.14 Aligned_cols=107 Identities=10% Similarity=-0.013 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh--
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES-- 323 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 323 (377)
..+-.++..+|.-|...|+++.|++.|-++...+... ...+..+.++-.+-...|+|..-..+..++......
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 3456788999999999999999999999988876543 356667778888888899998888877777655210
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
.....-+....+...++ ....+++..|.+++-.+
T Consensus 222 ~~~q~v~~kl~C~agLa--~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLA--NLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHhcCcchHHHHHHH--HHHHHHHHHHHHHHHhC
Confidence 00111121244444444 44555888888777543
No 331
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.87 E-value=1.6 Score=37.74 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV-- 240 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 240 (377)
..-.++..+|.-|...|+++.|++.|-++-+.+.+ .......+.++-.+-..+|+|..-..+..++.......
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 45678899999999999999999999998887654 34557788888899999999998888888877662110
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
....-+....+.. |.+....++|..|..++-.+
T Consensus 223 ~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 223 LAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence 0000122233444 44455556888888877654
No 332
>PRK10941 hypothetical protein; Provisional
Probab=93.84 E-value=1.5 Score=36.33 Aligned_cols=82 Identities=12% Similarity=-0.021 Sum_probs=66.4
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+..-..+.+.++-.+|...++++.|+.+.+..+.+ .|....-+...|.+|.+.|.+..|..-++..++.
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--- 244 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--- 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh---
Confidence 33445788888999999999999999999999988 5666677788999999999999999999999987
Q ss_pred hcCCCchhHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHN 212 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~ 212 (377)
.|++|....+...
T Consensus 245 --~P~dp~a~~ik~q 257 (269)
T PRK10941 245 --CPEDPISEMIRAQ 257 (269)
T ss_pred --CCCchhHHHHHHH
Confidence 4455544443333
No 333
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.81 E-value=1.6 Score=30.65 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-------TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
+..+|....+.+++-.++-+|++|+.+.++.......+ .+....+||..+..+|+.+-.++|++-|-+..-.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 45688889999999999999999999987763222111 34567789999999999999999999887766665
Q ss_pred CC
Q 017109 367 MP 368 (377)
Q Consensus 367 ~~ 368 (377)
.+
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 44
No 334
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.79 E-value=3.5 Score=34.47 Aligned_cols=112 Identities=10% Similarity=0.030 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
.....+...+|.+|.+.++|..|...+.-. ..-......+.......+..+|++|...++..+|..+..++--.....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 345678889999999999999987766432 111000001113345677889999999999999999998875443332
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
.+...........|++.-..+++-+|...|-+..
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444445566788888888888776665544
No 335
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=4.2 Score=35.26 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=101.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 131 RDYFLQGKLAEAEKLFLSALQEAKEGF-GERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
..++...++.+|...-...+.-..-.. ..-+-..+..++.+..+|...|+...-...+..-+....- +.+....+..
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL--rhd~e~qavL 211 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL--RHDEEGQAVL 211 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh--cCcchhHHHH
Confidence 334556888998888777664321110 0002234678888999999999977766666666554322 3345556777
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
.+.+-..|...+.|+.|.....++.--- ...+...+..++.+|.+..-+++|..|.+++-+|+...++
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 8888899999999999988877654211 1112356788889999999999999999999999987554
No 336
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.72 E-value=1.4 Score=29.53 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=24.9
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+|....+.+.+|..+...|++++|++.+-.++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6667788888888888888888888777776654
No 337
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.63 E-value=4.8 Score=35.54 Aligned_cols=191 Identities=13% Similarity=0.011 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
...+..-|.++..++++.+|.+.+.+..+-.... .....-.++.+.-...+-+++.+.- +..+...++..
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~---~f~lkeEvl~grilnAffl~nld~M----e~~l~~l~~~~--- 75 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESS---PFLLKEEVLGGRILNAFFLNNLDLM----EKQLMELRQQF--- 75 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcc---hHHHHHHHHhhHHHHHHHHhhHHHH----HHHHHHHHHhc---
Confidence 3455677899999999999999999988764321 0111113333333333334444443 33333333332
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC---C----HHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD---S----MTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
+.........|.+..+.+++++|++.+..-....+....+- + ......-...+.++...|++.++...+++.
T Consensus 76 -~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 76 -GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred -CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 23344556678888999999999988766554433322110 0 011112234678889999999999999998
Q ss_pred HHHHHhc-cCCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhh
Q 017109 318 LHIMESS-KGWNSLDTVIAAEGLALTLQ----STGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 318 l~~~~~~-~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~ 366 (377)
+...-+. ...+....-.+...+|+.|. .....+-+..+|+.++-..+++
T Consensus 155 ~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 155 IERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 8765332 22222222233334555553 2233444555555554444433
No 338
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.58 E-value=4.3 Score=35.41 Aligned_cols=109 Identities=15% Similarity=0.024 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC------Hh----HHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERD------PH----VASACNNLAELYRVKKAFDKAEPLYLEAI 192 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al 192 (377)
.++-..-|..++.+++|..|..-|..+++++.+..--.. .+ ...+...|..||..+++.+-|+.+..+.+
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 344445567778889999999999999998876421111 11 12345578999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
.+ +|....-+...|.++....+|.+|...+.-+.-++.-
T Consensus 256 ~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl 294 (569)
T PF15015_consen 256 NL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWL 294 (569)
T ss_pred hc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87 4555677788899999999999998888777666543
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.52 E-value=0.1 Score=25.36 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHH
Q 017109 250 DTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357789999999999999998876
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.52 E-value=0.12 Score=25.18 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998876
No 341
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.36 E-value=1.7 Score=39.46 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=75.3
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
++.....+..-+..+..+|+..+|..++..++...... ..-.+...+|.++.+.|...+|--++..|+.-.
T Consensus 209 ~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA--- 279 (886)
T KOG4507|consen 209 NTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH------NKDIALLSLATVLHRAGFSADAAVILHAALDDA--- 279 (886)
T ss_pred CchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc------cccchhhhHHHHHHHcccccchhheeehhccCC---
Confidence 33344333333444456899999999999999874332 123467889999999999999988887666554
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+....-++.++.++...|++......|..+.+.
T Consensus 280 -----~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 -----DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred -----ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 333444778888999999988888888877664
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.18 E-value=1.2 Score=32.67 Aligned_cols=85 Identities=9% Similarity=-0.015 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD 286 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (377)
...+..+...-...++.+++...+...--+. |.....-..-|.+++..|++++|+..++...+-
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-------- 73 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLR--------PNLKELDMFDGWLLIARGNYDEAARILRELLSS-------- 73 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------
Confidence 3445555555566889999888876654443 666777788899999999999999999987652
Q ss_pred CHHHHHHHHHHHHHHHHhCCh
Q 017109 287 SMTCIRRLRYLAQTYVKANRL 307 (377)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~ 307 (377)
.+......-.++.|+..+|+.
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCCchHHHHHHHHHHHhcCCh
Confidence 112223334567777777775
No 343
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.08 E-value=6.9 Score=35.78 Aligned_cols=182 Identities=12% Similarity=0.017 Sum_probs=126.6
Q ss_pred cccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 115 VSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
..+..+.....|..-...-...|+++...-.|++++-- -......+...+......|+.+-|...+..+.++
T Consensus 289 vkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 289 VKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------CALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred cCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 34555666677777778888899999999999999865 3455667777888777889999999888888887
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 195 LQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
..+ .. ..+...-+..-...|+++.|...+++...-. |....+-..-......+|..+.+.. +..
T Consensus 361 ~~k----~~---~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~-~~~ 424 (577)
T KOG1258|consen 361 HVK----KT---PIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY-KNE 424 (577)
T ss_pred cCC----CC---cHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH-HHH
Confidence 433 22 3566667778888999999999999987765 5555555566667778888888775 233
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHH
Q 017109 275 SIRILEENGEGDSMTCIRRLRYLAQT-YVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 275 al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 321 (377)
.+...... ..+.......+...+.. +.-.++.+.|...+.++.++.
T Consensus 425 l~s~~~~~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 425 LYSSIYEG-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred HHHHhccc-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 33222221 11222333444555554 344678888888888888764
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=4.4 Score=38.57 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 188 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
|.-|+.++++. +.+......++...|..++..|++++|...|-+++...
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 34445555544 33455667888999999999999999999999988764
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.83 E-value=5.2 Score=35.97 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=53.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH-HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 131 RDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV-ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
......|+++++....... ++ -|.. ..-...++..+..+|-++.|+...+.- ..
T Consensus 269 k~av~~~d~~~v~~~i~~~-~l--------l~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~ 323 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NL--------LPNIPKDQGQSIARFLEKKGYPELALQFVTDP----------------DH 323 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HT--------GGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H----------------HH
T ss_pred HHHHHcCChhhhhhhhhhh-hh--------cccCChhHHHHHHHHHHHCCCHHHHHhhcCCh----------------HH
Confidence 3446678888877766321 11 1111 223456667777778777766553221 12
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
.+ .+..+.|+.+.|.+..++ ......|..||.....+|+++-|.++|+++-
T Consensus 324 rF---eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 324 RF---ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HH---HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred Hh---HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 22 233456666666554432 1223467777888888888877777777654
No 346
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.70 E-value=2.3 Score=37.33 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
++..|..++.-.|+|..|++.++..--........-.+-...+++.+|.+|..+++|.+|+..|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567789999999999998876542211112222234456789999999999999999999999998776554
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.68 E-value=1.9 Score=31.69 Aligned_cols=86 Identities=8% Similarity=-0.091 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
....+..+...-...++.+++...+...--+ .|.....-..-|.++...|++++|+..++...+-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------- 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------- 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence 3445555556666688999998887766555 6777778888899999999999999999887763
Q ss_pred CchhHHHHHHHHHHHHHHccCH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKL 223 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~ 223 (377)
.+......-.++.|+..+|+.
T Consensus 74 -~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 -AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred -CCCchHHHHHHHHHHHhcCCh
Confidence 222234555667777777764
No 348
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.57 E-value=6.8 Score=34.38 Aligned_cols=151 Identities=11% Similarity=0.019 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHHHcCC---hhhHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG---HGNIDYADTMYHLATVLYLQGK---ENDSEALFLESIRIL 279 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 279 (377)
.+..++..|........|++|+.++-.|-+.+-.... +.-...+..-..+.++|+...+ .++|..-+..+-+-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 3456677788888889999999888877666532210 0011223334456677777655 456766666665555
Q ss_pred HHcCC-----------CCCHHH---HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHH-----
Q 017109 280 EENGE-----------GDSMTC---IRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLA----- 340 (377)
Q Consensus 280 ~~~~~-----------~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la----- 340 (377)
....+ +..|.. ...+..-|.+.+.+|+-++|.++++.+...+.+..-++.. ...+..+|
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~--lsllv~mGfeesd 319 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDET--LSLLVGMGFEESD 319 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchH--HHHHHHcCCCchH
Confidence 54433 233333 3344556889999999999999999999887665444332 22222221
Q ss_pred -H--HHHHcCCHHHHHHHHHH
Q 017109 341 -L--TLQSTGSLMEAQELFER 358 (377)
Q Consensus 341 -~--~~~~~g~~~~A~~~~~~ 358 (377)
+ +-...|+.+.|..++.+
T Consensus 320 aRlaLRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 320 ARLALRSCNGDVDSAVQFIIE 340 (568)
T ss_pred HHHHHHhccccHHHHHHHHHH
Confidence 1 12234777777777643
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.57 E-value=1.9 Score=35.48 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..+...+..|...|.+.+|+++.++++.+ +|.....+..+..++...|+--.+.+.|++.-+..+...|-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34556688899999999999999999987 8888889999999999999999999999998887776665443
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.48 E-value=6.3 Score=33.82 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=93.8
Q ss_pred CHhHHHHHHHHHHHHHHhcC------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKA------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACT 228 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 228 (377)
+|....++..+.......-. .+.-+.++++|++. .+++..+...+... ..+..+.++..+
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~~L~l~~l~~---~~~~~~~~~l~~ 86 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSERLLLGYLEE---GEKVWDSEKLAK 86 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH---HHHhCCHHHHHH
Confidence 67777777776655444322 34555667777765 34555444444443 345556677677
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHH
Q 017109 229 YYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD----------SMTCIRRLRYLA 298 (377)
Q Consensus 229 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la 298 (377)
-+++++... ++.+..-..|...-......-.+++....|.+++.......... ......++..+.
T Consensus 87 ~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 87 KWEELLFKN-----PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 777777663 22343333343333333445567899999999988776654322 234556677788
Q ss_pred HHHHHhCChhHHHHHHHHHHHHH
Q 017109 299 QTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
......|..+.|+..++-.+++.
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHH
Confidence 88889999999999999998874
No 351
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=92.43 E-value=10 Score=39.14 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc----C----------------
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR----K---------------- 222 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~---------------- 222 (377)
...+....+|..+...|++.+|+..|..|+...+.. .|....+.++-.++.+..-.+ +
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 346677789999999999999999999999998875 345555555555544332110 0
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhc---CCCCh--hHHHHHHHHHHHHHH
Q 017109 223 ------------------------------------LEDACTYYERALKIKGRVL---GHGNI--DYADTMYHLATVLYL 261 (377)
Q Consensus 223 ------------------------------------~~~A~~~~~~al~~~~~~~---~~~~~--~~~~~~~~la~~~~~ 261 (377)
...=.+.+++++..+.+.. .+..| -...+...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 1111234455555554432 11112 234566667777776
Q ss_pred cC--------------------ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 262 QG--------------------KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 262 ~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.. .-.++...+.+++....... +.......+..+|.+|...|-..++.=+++.++...
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 66 67778888888887644322 355677889999999999998877766666555443
No 352
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.19 E-value=9.8 Score=35.35 Aligned_cols=131 Identities=14% Similarity=0.063 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH--HHHHHhhCCCCCHhH-HHHHH-------------HHHHHHHHhcCHhHHHHHH--
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSA--LQEAKEGFGERDPHV-ASACN-------------NLAELYRVKKAFDKAEPLY-- 188 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~a--l~~~~~~~~~~~~~~-~~~~~-------------~la~~~~~~g~~~~A~~~~-- 188 (377)
...+.++...|.-..|+++|... .+..++..+..++.. -.... ..+..+...|+.++|+...
T Consensus 649 ~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d 728 (1081)
T KOG1538|consen 649 HEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGD 728 (1081)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhc
Confidence 34567777788888888877643 334444333322221 11111 2345556666666666542
Q ss_pred ----HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 017109 189 ----LEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK 264 (377)
Q Consensus 189 ----~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 264 (377)
+-++++.++. +......+..++..+.....+.-|.+.|++.-+. -.+..++...++
T Consensus 729 ~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------------ksiVqlHve~~~ 788 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------------KSLVQLHVETQR 788 (1081)
T ss_pred ccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------------HHHhhheeeccc
Confidence 3334443333 1111233444455555555555555555443222 123455666777
Q ss_pred hhhHHHHHHHHHH
Q 017109 265 ENDSEALFLESIR 277 (377)
Q Consensus 265 ~~~A~~~~~~al~ 277 (377)
+++|..+.++--+
T Consensus 789 W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 789 WDEAFALAEKHPE 801 (1081)
T ss_pred chHhHhhhhhCcc
Confidence 7777766655433
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.19 E-value=1.9 Score=42.39 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=86.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 213 LGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 213 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
....+...+.|+.|+..|++....+ |....-..+.+..|.....+-.-..-.+.+.+|+..++... +.+....
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 553 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAPL 553 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCch
Confidence 4455666677777777777765554 22233456777777777655433333366667776666653 2223333
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHHHHHhhCC
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLA-LTLQST-GSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 368 (377)
-|...|.+|..+|++++-+++|.-+++.+ +.||........+. +++... .+...|....--++.+.++...
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 46678889999999999999999999876 34565444333322 222221 2334555666666665554433
No 354
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.15 E-value=2.6 Score=34.90 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...++..++..+...|+++.+...+++.+.. +|..-..+..+-..|...|+...|+..|++.-+....-.|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4567788899999999999999999999987 78888899999999999999999999999998865554454
Q ss_pred Cch
Q 017109 202 EDI 204 (377)
Q Consensus 202 ~~~ 204 (377)
+..
T Consensus 224 ~P~ 226 (280)
T COG3629 224 DPA 226 (280)
T ss_pred Ccc
Confidence 443
No 355
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.07 E-value=6.2 Score=32.78 Aligned_cols=74 Identities=23% Similarity=0.143 Sum_probs=61.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
.....++..++..+...|+++.+...+++.+.. +|..-..+..+-..|...|+...|+..|++.-.....-.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edl 221 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEEL 221 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhc
Confidence 356788999999999999999999999999887 444457889999999999999999999999887654433
Q ss_pred CC
Q 017109 242 GH 243 (377)
Q Consensus 242 ~~ 243 (377)
+.
T Consensus 222 gi 223 (280)
T COG3629 222 GI 223 (280)
T ss_pred CC
Confidence 43
No 356
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.04 E-value=6.5 Score=32.96 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 326 (377)
..+.+...||.+|.+.+++..|-..+.-.-.- ......+.......+..+|++|...++..+|..+..++--.....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~-tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPLD-TGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc-cchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence 45677889999999999998887765432110 000001223445667889999999999999999998876554333
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 327 WNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 327 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
.+..-....-...|+++-..+++-+|...|-+..
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222234445556788888888877766665443
No 357
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.94 E-value=8.1 Score=33.83 Aligned_cols=111 Identities=15% Similarity=0.029 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC------hh----HHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN------ID----YADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.+-..-|..++++++|..|..-|+.+++++.+...... .+ ...+...+..+|...++.+-|+....+.+-
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34445566778889999999999999998865322111 11 123456788999999999999999998887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 326 (377)
+ +|....-+..-|.++..+.+|.+|.+.+--+.-++.-..|
T Consensus 257 l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~ 297 (569)
T PF15015_consen 257 L--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGG 297 (569)
T ss_pred c--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5 3444455667888999999999998887776666554443
No 358
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.88 E-value=14 Score=36.62 Aligned_cols=112 Identities=9% Similarity=-0.007 Sum_probs=79.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 208 (377)
+...+.....|+.|+..|++....+ ++...--++.+.+|.....+-.-..-.+.+.+|+..+++..+ .+....
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 553 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPL 553 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCch
Confidence 4556667777788888877766542 223344677788888777665444444778888888877754 333345
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
-|...|.+|..+|++++-++++.-|++.+ +.||......
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 592 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLR 592 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHH
Confidence 68888999999999999999999999886 4456555443
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.60 E-value=0.72 Score=25.89 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQE 152 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~ 152 (377)
+.++..|...|+.+.|.+.+++.+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999853
No 360
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.30 E-value=5.2 Score=30.36 Aligned_cols=128 Identities=15% Similarity=0.057 Sum_probs=89.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH--HH
Q 017109 131 RDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI--GV 208 (377)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~ 208 (377)
.-....|..++|+..|...-+. .....-.-+....+.+....|+...|...|..+-... ..|.. -.
T Consensus 66 L~lA~~~k~d~Alaaf~~lekt------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ 133 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKT------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDL 133 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHH
Confidence 3345567778887777655432 1112234566788999999999999999999876531 12222 23
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+...-+.++...|.|+.-.... +.+.++.+|....+.-.||..-.+.|++..|...|.+...
T Consensus 134 ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4556677788888887654433 3334566677788888999999999999999999998765
No 361
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.15 E-value=7.2 Score=31.71 Aligned_cols=184 Identities=7% Similarity=-0.027 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
+..++.+....|+|++.+.+.++++.. +......=...++.+|-. .|....+...+.......+.. ..+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~---~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK---GNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc---chh
Confidence 456888999999999999999999986 122233344445555532 233334444433332221111 011
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC--Ch-hHHHHHHHHHHHHHHc-----C-----ChhhHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG--NI-DYADTMYHLATVLYLQ-----G-----KENDSEAL 271 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~-~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 271 (377)
. ...+..-|. ..=-++=.......+.+.....-+. ++ .....+-..|..|... | -.+.|...
T Consensus 74 ~----~~~~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 74 K----QVKLIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp H----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 1 111111111 0111222334444555544322111 11 1222233344444321 1 23688999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHhc
Q 017109 272 FLESIRILEENGEGDSMTCIRRLRYLAQTYV-KANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~ 324 (377)
|++|+++.....++.+|.......+.+..|. -.|+.++|....++++......
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9999999999767788888877777777664 5899999999999988776443
No 362
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=8.6 Score=32.57 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=70.5
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHH
Q 017109 258 VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAE 337 (377)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 337 (377)
+....++.++|++++++..+.......+ .........+|+++...|+..++.+.+...-....+..+-...-....|.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 3445568999999999999888876533 35566677899999999999999999999888776665543322333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 017109 338 GLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 338 ~la~~~~~~g~~~~A~~~~~~ 358 (377)
.-+..|...|++.......-+
T Consensus 162 lssqYyk~~~d~a~yYr~~L~ 182 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRHALL 182 (380)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 445666777888765444333
No 363
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.99 E-value=13 Score=34.22 Aligned_cols=179 Identities=9% Similarity=-0.043 Sum_probs=122.3
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 159 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
+..+.....+..........|+++...-.+++++--+. .....|...+......|+.+-|...+..+.++..
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 34455666777777888889999999999999887532 3346778888888888999999999988888863
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
+....+...-+.+....|+++.|...++....-. |....+-..-+.....+|+.+.+.. +....
T Consensus 363 -------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~ 426 (577)
T KOG1258|consen 363 -------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY-KNELY 426 (577)
T ss_pred -------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH-HHHHH
Confidence 4445566677788888999999999999987642 3333334445566677788887774 22222
Q ss_pred HHHHhccCCCCh-hHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 017109 319 HIMESSKGWNSL-DTVIAAEGLALT-LQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 319 ~~~~~~~~~~~~-~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 363 (377)
.... .+..++ .....+...++. +.-.++.+.|...+.+++++.
T Consensus 427 s~~~--~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 427 SSIY--EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred HHhc--ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 2211 111122 123444455554 445688889999888887753
No 364
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.90 E-value=3.1 Score=36.33 Aligned_cols=117 Identities=15% Similarity=-0.000 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHHHHhCC---hhHHHHHHHHHHHHHHh
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEG---DSMTCIRRLRYLAQTYVKANR---LTDAETVQRKILHIMES 323 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 323 (377)
..++..|++.+....|++|+.++-.|-+.+-..... .....+..-..+.+||+.+.+ .+.|..-+..+-+-+..
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 345556677777777888877777666554443210 011222333455677776654 45666666555555444
Q ss_pred ccC-----------CCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 324 SKG-----------WNSLD---TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 324 ~~~-----------~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.+| +..|. ....+..-|.+.+.+|+-++|.++++.+.....+.
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 433 34444 34556667899999999999999999998877664
No 365
>PRK10941 hypothetical protein; Provisional
Probab=90.57 E-value=5.7 Score=32.95 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
.......++-.+|...++++.|+.+.+..+.+. |..+.-....|.+|.+.|.+..|..-++..++.++
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~--------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFD--------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 456678889999999999999999999999985 55556677899999999999999999999888754
No 366
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.43 E-value=0.24 Score=38.97 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=50.5
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
...+.++.+.|.+.|.++++.. |+....++.+|....+.|+++.|...|++.+++.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3456789999999999999985 566889999999999999999999999999996544
No 367
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=90.21 E-value=5 Score=28.32 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED-------IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+..+|......+++-.++-+|++|+.+.++...... ........++|..+..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 457888899999999999999999999887632211 1134567899999999999999999999887765444
No 368
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.19 E-value=9 Score=31.23 Aligned_cols=183 Identities=9% Similarity=-0.031 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+..++.+....++|++...+..++++.... ......-.+.++.+|-. .|....+...+.. ++......+. .
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~-----~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~--~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDS-----EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN--E 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--h
Confidence 345788888899999999999998774210 01112233444444432 3555556555554 2221111111 1
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHh-----CC-----hhHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS---MTCIRRLRYLAQTYVKA-----NR-----LTDAETV 313 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~ 313 (377)
.. ..+..-|. ..=-++-...+...+.+......+.. ......+-..|..|.-. |+ .+.|...
T Consensus 76 ~~----~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 DH----VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 11111111 11123444566666666655533321 22222233344444322 22 4588999
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 017109 314 QRKILHIMESSKGWNSLDTVIAAEGLALTLQ-STGSLMEAQELFERCLEAR 363 (377)
Q Consensus 314 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 363 (377)
|+.|+++......+.||.......+.+..|. -.++.++|....+++++-.
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999888788889977766777766654 5699999987777766654
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.11 E-value=8.2 Score=32.03 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 370 (377)
.+...+..|...|.+.+|+.+.++++.. +|..-..+..+-.++...|+--.+.+.|++.-+..+.-+|.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 3455677888889999999999988876 355566777788888889998888888888877776666643
No 370
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.04 E-value=1.1 Score=37.09 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
.-...+.-....|+.++|...|+.|+.+ .|....++..+|......++.-+|-.+|-+|+.+
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3344555667889999999999999998 7888899999999999999999999999999987
No 371
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.92 E-value=33 Score=37.37 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=79.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
-....+++|.+.|++....|+++.|....-.|.+. ....+....|.....+|+-..|+..+++.++....
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 45668899999999999999999999999888764 25678889999999999999999999999976543
Q ss_pred hc-CC--------CchhHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHH
Q 017109 198 SF-GP--------EDIRIGVAFHNLGQFYLVQRKL--EDACTYYERALKIKG 238 (377)
Q Consensus 198 ~~-~~--------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~ 238 (377)
.. ++ +......+...++......|++ ..-+.+|..+.++..
T Consensus 1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 21 11 0111122344455555555653 234566777777653
No 372
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.91 E-value=7.1 Score=29.66 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=97.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 017109 130 GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA 209 (377)
Q Consensus 130 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 209 (377)
|..|+..+.-+++-..|..++++.. .+..++|+.-|...-+. .-...| ..+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~-----------------------~~k~d~Alaaf~~lekt----g~g~Yp--vLA 96 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQ-----------------------ENKTDDALAAFTDLEKT----GYGSYP--VLA 96 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHH-----------------------cCCchHHHHHHHHHHhc----CCCcch--HHH
Confidence 3345555555555556666655532 24455565555443332 222233 456
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY--ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.+..+.+....|+...|+..|.++-... ..|.. -.+...-+.++...|.|++-....+ ....+.+
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~srve-------pLa~d~n 163 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE-------PLAGDGN 163 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHHhh-------hccCCCC
Confidence 7888999999999999999999865432 11222 2344556777888888876555443 3334456
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
+....+...||..-++.|++..|...|.+...
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777888999999999999999999998765
No 373
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.30 E-value=0.88 Score=39.81 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
.+...|.+++.-.|+|..|++.++..---.+.....-..-...+++.+|-+|+.+++|.+|++.|...+-...+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566788899999999999998775421111111112344566788999999999999999999999987765543
No 374
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.04 E-value=6.9 Score=28.30 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
.....+.++.++....+ ..+.+.+++..++. ......-.+.+.|+..+.+.++|++++.+.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45677888888877654 45566666665541 223455778899999999999999999999998886
No 375
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.01 E-value=7.8 Score=32.33 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 184 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
|..+|.+|..+ .|..+..++.+|.++...|+.-.|+-+|-+++-.. .|. ..+..++..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~-------~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR-------IPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS-------B---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcC-------CCc-HHHHHHHHHHHHH
Confidence 67899999998 34447899999999999999999999999998543 133 5677788777776
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.98 E-value=2.7 Score=37.78 Aligned_cols=140 Identities=13% Similarity=0.075 Sum_probs=72.2
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
.....|+++++....... ++... -| ..-...++..+.++|.++.|+...+.- ...+
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~-----i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rF 325 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPN-----IP--KDQGQSIARFLEKKGYPELALQFVTDP----------------DHRF 325 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-H----------------HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhccc-----CC--hhHHHHHHHHHHHCCCHHHHHhhcCCh----------------HHHh
Confidence 334457777766655311 11111 11 233566778888888888887655432 2223
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.+..+.|+++.|.+..++. +. ...|..||...+.+|+++-|+++|+++-....-..-.......
T Consensus 326 ---eLAl~lg~L~~A~~~a~~~----------~~---~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 326 ---ELALQLGNLDIALEIAKEL----------DD---PEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp ---HHHHHCT-HHHHHHHCCCC----------ST---HHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred ---HHHHhcCCHHHHHHHHHhc----------Cc---HHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 3456778888887765432 11 2358899999999999999999998865442111000000013
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~ 353 (377)
.-+..++.+....|+..-|.
T Consensus 390 ~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHccCHHHHH
Confidence 44455555555555554443
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.59 E-value=1.1 Score=25.09 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 337 EGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 337 ~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
..+|..|...|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5689999999999999999999885
No 378
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.23 E-value=1.3 Score=36.71 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+..-.+.+.-....|+.++|...|+.|+.+. |....++..+|......++.-+|-.+|-+++.+
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 4444556666778899999999999999996 667788899999999889999999999998876
No 379
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.05 E-value=26 Score=33.78 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=27.6
Q ss_pred ccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 114 VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQE 152 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 152 (377)
....+......+....|..++..|++++|...|-+++..
T Consensus 359 ~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 359 SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 333444556677777788888888888888888777754
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.67 E-value=19 Score=31.77 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH--HHHHhcCHhHHHHHHHHHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE--LYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 194 (377)
.......+...+..++|..|...+...... . +.... ...+..++. -+....++.+|.+.++..+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l--~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRR---L--PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C--Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666778889999999999999998764 2 11222 445555544 455677889999999987765
No 381
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.58 E-value=20 Score=32.96 Aligned_cols=115 Identities=17% Similarity=0.058 Sum_probs=79.0
Q ss_pred ccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHH-
Q 017109 112 GSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLE- 190 (377)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~- 190 (377)
...+++.+|...-... +...+...++...+......++.. ++..+.+..+++......|....+...+..
T Consensus 57 ~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 57 GIAINDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred cCccCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3346667777666665 788888888888888888888766 778888999999988887777666655554
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+....... . ........++.++......|+..++.....++.+..
T Consensus 128 a~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 128 AEWLSPDN-A-EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred HHhcCcch-H-HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 44331110 0 001111223347888888999999999999888876
No 382
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.33 E-value=9.6 Score=31.77 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 017109 142 AEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV 219 (377)
Q Consensus 142 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 219 (377)
|+.+|.+|..+ .|..+..++.+|.++...|+.-.|+-+|-+++-. ..|. ..+..++...+.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67899999998 7888999999999999999999999999999854 2332 4567777777766
No 383
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=17 Score=30.88 Aligned_cols=95 Identities=9% Similarity=0.008 Sum_probs=66.6
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
+....++.++|++++++..+.......+ ..........+.++...|+.+++.+.+.+.-+......+-. +..-..++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHH
Confidence 3345568999999999998887655443 34566778889999999999999999999988777765332 22333344
Q ss_pred HH-HHHHHHhCChhHHHHH
Q 017109 296 YL-AQTYVKANRLTDAETV 313 (377)
Q Consensus 296 ~l-a~~~~~~g~~~~A~~~ 313 (377)
.+ +..|...|++......
T Consensus 161 ~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 44 4556667777654333
No 384
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.24 E-value=3.2 Score=35.34 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPL 187 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 187 (377)
..+.-+...|+-.+.++++++|...|..|..++.+.+|..+.....+++..|..++..+++....-.
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456678889999999999999999999999999999988889999999999999998888766543
No 385
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.05 E-value=12 Score=28.75 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-------CHhHHHHHHHH
Q 017109 123 WRVFTDSGRDYFL-----QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-------AFDKAEPLYLE 190 (377)
Q Consensus 123 ~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~ 190 (377)
....+..|..++. .++...|++.+..+-+. ....+...+|.++..-. +..+|++++.+
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~tr 137 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTR 137 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHH
Confidence 3455555555432 35678888888777642 34556677777766532 25667777777
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHc------------------------cCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQ------------------------RKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------------g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+.++ .+ ..+.++|+..|..- .+.++|.++--+|-++
T Consensus 138 aCdl-------~~---~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel---------- 197 (248)
T KOG4014|consen 138 ACDL-------ED---GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL---------- 197 (248)
T ss_pred hccC-------CC---chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc----------
Confidence 7654 11 23444455444432 3445555555555443
Q ss_pred hHHHHHHHHHHHHHHc----CChhhHHHHHHHHHHHHHHcC
Q 017109 247 DYADTMYHLATVLYLQ----GKENDSEALFLESIRILEENG 283 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~ 283 (377)
..+.+..++++.|..- .+.++|..+-.++.++.++..
T Consensus 198 ~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 198 DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 2345666777776542 356788888888888876653
No 386
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.46 E-value=20 Score=32.01 Aligned_cols=139 Identities=16% Similarity=0.094 Sum_probs=89.9
Q ss_pred HhHHHHHHHHHHHHHHh-cCHhHHHHHHHHHHHHHHHhcC----CC--chhHHHHHHH----HHHHHHHccCHHHHHHHH
Q 017109 162 PHVASACNNLAELYRVK-KAFDKAEPLYLEAIKILQESFG----PE--DIRIGVAFHN----LGQFYLVQRKLEDACTYY 230 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~----~~--~~~~~~~~~~----la~~~~~~g~~~~A~~~~ 230 (377)
....+++..+|..|... .+.-.|..++.++++....... +. .|..+.-+.. ....-.-.++.+ ..-
T Consensus 242 ~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~R 318 (615)
T KOG0508|consen 242 ESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMR 318 (615)
T ss_pred hhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHH
Confidence 34466677777776643 3567788899998887554100 00 1111111111 111111112221 122
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 017109 231 ERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK 303 (377)
Q Consensus 231 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 303 (377)
-+++-+.+++.+++|++........|-+|..+|+++..++++.-|+.+.++...+-++.+...+...+.++..
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 3566677788899999887777778999999999999999999999999998777777777777777777653
No 387
>PF12854 PPR_1: PPR repeat
Probab=86.26 E-value=2.2 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
..+|..+-..+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46889999999999999999999876
No 388
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.19 E-value=28 Score=32.10 Aligned_cols=176 Identities=13% Similarity=0.041 Sum_probs=102.5
Q ss_pred cCHhHHHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC----------
Q 017109 179 KAFDKAEPLYLEAIKILQESF----GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG---------- 244 (377)
Q Consensus 179 g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 244 (377)
..|++|...|.-+.....-.. -.++|.....+..++.+...+|+.+-|.+..++++-.......+.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 446777777776666532110 012566788999999999999999999999999988776543221
Q ss_pred ------ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 245 ------NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 245 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
+....-+++..-..+.+.|-+..|.++++-.+++-+. .+|..+ .+.+-...+...+|.=-++.++..-
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~----eDPl~~--l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS----EDPLGI--LYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc----CCchhH--HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1112223333344556789999999999888876322 123222 1222222334444444444443332
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGS---LMEAQELFERCLEARK 364 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 364 (377)
..-.-..-++ ...-..+|..|..... ...|...+.+|+...+
T Consensus 406 ~~n~l~~~PN----~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 406 NMNKLSQLPN----FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hhccHhhcCC----chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2111111111 1223346677776665 6788889999988776
No 389
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.79 E-value=1.8 Score=34.30 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=50.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 132 DYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 132 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
.....++.+.|.+.|.+++++ -|.....++.+|......|+++.|..-|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 445678999999999999988 6888899999999999999999999999999987
No 390
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=85.72 E-value=15 Score=28.52 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC-
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGE--GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN- 328 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 328 (377)
+...+......|++++|...++++.+...+... ...|. .+.-|.+--.+..|-+|...+.-...-. ...++
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe----l~~ag~~~~a~QEyvEA~~l~~~l~~~~--~ps~~E 105 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE----LYFAGFVTTALQEYVEATLLYSILKDGR--LPSPEE 105 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHhhcchHHHHHHHHHHHHHHhcCC--CCCHHH
Confidence 444556677889999999999988877655420 01111 1222333334445566655554322211 10100
Q ss_pred -ChhHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 017109 329 -SLDTVIAAEGLAL----------TLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 329 -~~~~~~~~~~la~----------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 374 (377)
..........+|+ .....|++++|...++-.-.++..+..-+.|..
T Consensus 106 L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~ 162 (204)
T COG2178 106 LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKA 162 (204)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 0001122222222 345779999999999999999888877777753
No 391
>PRK14707 hypothetical protein; Provisional
Probab=85.58 E-value=53 Score=35.76 Aligned_cols=241 Identities=11% Similarity=-0.003 Sum_probs=138.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHH--HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASA--CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI 206 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 206 (377)
++.++...++|.+...+-.-+..+...+ .+++..... --.+++++....++.++-.+-.-+..+............
T Consensus 879 vantLNALSKWPd~~~C~~AA~aLA~rL--~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~ 956 (2710)
T PRK14707 879 VVIVLNALSKWPNVPVCAAAASALAERL--ADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLRE 956 (2710)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHH--hcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhh
Confidence 4556666667766666666666666665 234444333 345777788888887766665555556555532212222
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGD 286 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (377)
...-..++.++...+++.+...+-.-+..+...+..+..-.....-..++.++....++.++-.+-.-+..+..... .
T Consensus 957 Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ 1034 (2710)
T PRK14707 957 ALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS--N 1034 (2710)
T ss_pred hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc--c
Confidence 23344577788888888877776666666655442221111112234567777777888776666666666665543 2
Q ss_pred CHHH--HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 287 SMTC--IRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 287 ~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.+.. ...-..++.++....++.+.-.+-.-+..+...............-..++.++...-++.+.-.+-..++.+..
T Consensus 1035 ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~ 1114 (2710)
T PRK14707 1035 DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAK 1114 (2710)
T ss_pred CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 2222 22234677788888888776666555555544332221111223334566677777777777777777777777
Q ss_pred hhCCCCCCc
Q 017109 365 KLMPQDHIQ 373 (377)
Q Consensus 365 ~~~~~~~~~ 373 (377)
.+-+..++.
T Consensus 1115 rL~~~~~l~ 1123 (2710)
T PRK14707 1115 RLTDDAGLR 1123 (2710)
T ss_pred Hhccccchh
Confidence 665544443
No 392
>PF12854 PPR_1: PPR repeat
Probab=85.57 E-value=2.5 Score=22.02 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
..++..+...+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 56888999999999999999999876
No 393
>PRK14707 hypothetical protein; Provisional
Probab=84.43 E-value=67 Score=35.09 Aligned_cols=244 Identities=9% Similarity=-0.022 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHH--HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASA--CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
.+++++...++|.+...+-.-+..+...+ .+++..... -..+++++....++.++-.+-.-+..+...+.+.....
T Consensus 962 ~lsNtLNALSKWPd~~~c~~AA~aLA~rL--~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~ 1039 (2710)
T PRK14707 962 NLPQVLNALSKWPDVPAGGEVVDALAERL--VDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLC 1039 (2710)
T ss_pred HHHHHHhhhccCCCchHHHHHHHHHHHHH--hccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhh
Confidence 34566666677776666666665555554 223332222 34567777788888776666666666666553211111
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
....-..++.++....++.+...+-.-+..+...+.....-.....-..++.++....++.+.-.+-+.++.+.......
T Consensus 1040 ~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~ 1119 (2710)
T PRK14707 1040 KALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDD 1119 (2710)
T ss_pred hhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccc
Confidence 22233457777777777776666655555555443322111122223456777777778888777777777777777544
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..+........++.+.....++.....+=.-+..+...............-..++..+-...++.+.-.+-+-++.+...
T Consensus 1120 ~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~r 1199 (2710)
T PRK14707 1120 AGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAER 1199 (2710)
T ss_pred cchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHh
Confidence 44444444455666666666665544444434444333322211112222334555555555555555555555555555
Q ss_pred hCCCCCCc
Q 017109 366 LMPQDHIQ 373 (377)
Q Consensus 366 ~~~~~~~~ 373 (377)
.-...+|.
T Consensus 1200 lG~a~~P~ 1207 (2710)
T PRK14707 1200 AGSAELPW 1207 (2710)
T ss_pred hcCCCCCc
Confidence 44444543
No 394
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=83.90 E-value=14 Score=26.63 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=57.3
Q ss_pred CChhhHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 017109 263 GKENDSEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLAL 341 (377)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 341 (377)
+.-..-..++++++..+... .-.+++....++...+... +++.+.|...... ..|. ..+..+...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~---~IG~---~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSK---GIGT---KLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHH---TTST---TBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHc---CccH---HHHHHHHHHHH
Confidence 45556677888888887553 2234556666665555432 2777777765432 2232 33788999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 017109 342 TLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 342 ~~~~~g~~~~A~~~~~~al 360 (377)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998865
No 395
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=83.81 E-value=23 Score=32.48 Aligned_cols=71 Identities=10% Similarity=-0.085 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVK--ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 290 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
...++.+||.+-.- ...-..++.+|.+++...+..++..| ..-|..+|-.+.+.+++.+|+..+.++-+..
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi 348 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVI 348 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556655432 23345679999999999988887655 4667788999999999999999888776543
No 396
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.56 E-value=3.9 Score=34.84 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
..-+...|.-.+.++++++|...|..|..++...+|..+.....+++..|..++..++.....-
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456678889999999999999999999999999999888999999999999988877665543
No 397
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.36 E-value=8.8 Score=27.78 Aligned_cols=67 Identities=12% Similarity=0.023 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhCCh---hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVKANRL---TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
...+.++++.++....+. .+.+.+++..++. .......++.+.|+.-+.+.|+|+++..+.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344567788888766544 4455555554430 111224678888999999999999999999988874
No 398
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.01 E-value=28 Score=29.59 Aligned_cols=59 Identities=22% Similarity=0.139 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
.+-...++..+..+-++....++++ ++.-+.++..++.--. .-..+|+..++++++..+
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE 247 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH
Confidence 3344445666677777777888877 6677777777665432 346678888888877643
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.38 E-value=35 Score=30.19 Aligned_cols=140 Identities=11% Similarity=-0.027 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV--LYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
.-....+...+..++|..|...+...... ..+. .. ...+..++.. +...-++.+|.+.++..+......
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~--~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l--- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGR--EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL--- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCch--hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh---
Confidence 45566777888999999999999998764 1111 21 3445555444 456778889999999877642210
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
......+..+..+. ++...+.....................+..-|.=-...|+|+.|...+=+++++.-+
T Consensus 203 --~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 --NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred --HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 00011111122221 111122222221111100001222333334444445689999999999888887654
No 400
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=82.19 E-value=2.8 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
+|+.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999988654
No 401
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=82.13 E-value=16 Score=26.24 Aligned_cols=86 Identities=13% Similarity=0.213 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEG-FGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
|.-..-...+++++...... .-.+++....++...+.... .+.+.|...... ..| ...+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~---~IG---~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK---GIG---TKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH---TTS---TTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc---Ccc---HHHHHHHHHHHH
Confidence 55566677888888876432 11334556666665555332 777777765543 112 334678899999
Q ss_pred HHHHccCHHHHHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERAL 234 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al 234 (377)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998875
No 402
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.88 E-value=12 Score=33.97 Aligned_cols=99 Identities=16% Similarity=0.047 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---CHhHHHHHHHHHHHHHHHh
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---AFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~ 198 (377)
.++....-|.-.+..+....++..|.+++.. .+.....+.+.+.+++..+ +.-.|+.-...++.+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl---- 440 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL---- 440 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC----
Confidence 3444445555555566677888888888866 5677778888888887754 444455555555554
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
++....+++.|+.++...+++.+|+++...+...
T Consensus 441 ----n~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 441 ----NPSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred ----ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 5667789999999999999999999987665443
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.29 E-value=30 Score=28.70 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=50.5
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE-DACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
..+...|++..|.+...-.++.+.+...+.+ ......+..+....+.-+ +-..+.++++... +. +......+..
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~~~Gdp~L 92 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS-KF-GSYKFGDPEL 92 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-TT--HHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc-CCCCCCCHHH
Confidence 3444444455555554444444444322111 122344555554443322 3556777777777 22 3333556788
Q ss_pred HHHHHHHHHHcCChhhHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
+..+|..+.+.|++.+|..++-.
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHh
Confidence 88999999999998888877654
No 404
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.66 E-value=7.2 Score=24.92 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
+..+...|.-+...|++++|+.+|+++++...++..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556667778899999999999999998877543
No 405
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.23 E-value=13 Score=23.82 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+..+...|.-+-..|++++|+.+|+++++...+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4556677777888999999999999999987654
No 406
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=79.64 E-value=46 Score=29.82 Aligned_cols=207 Identities=16% Similarity=0.110 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc---
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF--- 199 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--- 199 (377)
.++|+.-.......++-+.|+...++++.. .|. ....++.+|...++-+.-..+|+++.....+..
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~--------sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~ 370 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEM--------SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMG 370 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccC--------CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhh
Confidence 345555555666677777777777776644 333 455677777777777776677776655432211
Q ss_pred ------CC-Cch----h--------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHH
Q 017109 200 ------GP-EDI----R--------IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA-TVL 259 (377)
Q Consensus 200 ------~~-~~~----~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~ 259 (377)
+. +++ . ...+++.+-..-.+..-.+.|...|-++-+. .-.. ..++..-| .-+
T Consensus 371 ~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~----~~~~----h~vyi~~A~~E~ 442 (660)
T COG5107 371 ESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE----GIVG----HHVYIYCAFIEY 442 (660)
T ss_pred hhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc----CCCC----cceeeeHHHHHH
Confidence 00 011 0 0111111111111222233444444443322 1111 11222222 235
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 017109 260 YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGL 339 (377)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 339 (377)
...|++.-|...++-.+..+. +.+... ...-..+...|+-..|..+|+.+++..++. +....+..+
T Consensus 443 ~~~~d~~ta~~ifelGl~~f~-----d~~~y~---~kyl~fLi~inde~naraLFetsv~r~~~~------q~k~iy~km 508 (660)
T COG5107 443 YATGDRATAYNIFELGLLKFP-----DSTLYK---EKYLLFLIRINDEENARALFETSVERLEKT------QLKRIYDKM 508 (660)
T ss_pred HhcCCcchHHHHHHHHHHhCC-----CchHHH---HHHHHHHHHhCcHHHHHHHHHHhHHHHHHh------hhhHHHHHH
Confidence 678999999999998887633 333222 222344567789999999999888776443 224555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q 017109 340 ALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 340 a~~~~~~g~~~~A~~~~~~al~~ 362 (377)
-..-..-|+...+...-++..+.
T Consensus 509 i~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 509 IEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhhcchHHHHhHHHHHHHH
Confidence 56566667776666555554443
No 407
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=79.04 E-value=1.3 Score=38.85 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 017109 147 LSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV 219 (377)
Q Consensus 147 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 219 (377)
-+++-+.++++|+++++........|-+|..+|+++..++.+.-|+++.++...|-++.....+...+.++..
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 3556667788888888887777788999999999999999999999999998888888888887777776654
No 408
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=78.61 E-value=5.8 Score=20.10 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
+|+.+-..|.+.|++++|.+.|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466778889999999999999998754
No 409
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=78.60 E-value=15 Score=23.77 Aligned_cols=33 Identities=18% Similarity=-0.099 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 326 (377)
+...|..+-..|+.++|+.+|++++....+...
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 334445555668999999999999998766543
No 410
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.60 E-value=37 Score=28.16 Aligned_cols=215 Identities=12% Similarity=-0.003 Sum_probs=119.2
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHh-HHHHHHHHHHHHHHH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFD-KAEPLYLEAIKILQE 197 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~ 197 (377)
.....++++.=+..+.+.|++..|.++..-.++.+.+...+. .......+..+....+.-+ +-..+..++++-. +
T Consensus 6 y~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~---~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~ 81 (260)
T PF04190_consen 6 YDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPV---DEESIARLIELISLFPPEEPERKKFIKAAIKWS-K 81 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c
Confidence 344566777778889999999999999988888887752222 2333456666666655333 4566777777776 3
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----------HHHHhcCCCChhHHHHHH-HHHHHHHHcCCh
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK-----------IKGRVLGHGNIDYADTMY-HLATVLYLQGKE 265 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~ 265 (377)
. +.........+..+|..+++.|++.+|..++-.+-. ..... +. +.....+. .....|...++.
T Consensus 82 ~-~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~--~~e~dlfi~RaVL~yL~l~n~ 157 (260)
T PF04190_consen 82 F-GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GY--PSEADLFIARAVLQYLCLGNL 157 (260)
T ss_dssp T-SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TS--S--HHHHHHHHHHHHHHTTBH
T ss_pred c-CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cC--CcchhHHHHHHHHHHHHhcCH
Confidence 2 334445568899999999999999999998743211 11111 11 11222232 333456778999
Q ss_pred hhHHHHHHHHHHHHHHc----C------CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHH
Q 017109 266 NDSEALFLESIRILEEN----G------EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335 (377)
Q Consensus 266 ~~A~~~~~~al~~~~~~----~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 335 (377)
..|...+..-.+..... . ....|..-.++ .+-.+ .+.++ ...|....+.++..... +|.....
T Consensus 158 ~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~-lLl~t-~e~~~----~~~F~~L~~~Y~~~L~r-d~~~~~~ 230 (260)
T PF04190_consen 158 RDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQ-LLLLT-CERDN----LPLFKKLCEKYKPSLKR-DPSFKEY 230 (260)
T ss_dssp HHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHH-HHHHH-HHHT-----HHHHHHHHHHTHH---H-HHHTHHH
T ss_pred HHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHH-HHHHH-HhcCc----HHHHHHHHHHhCccccc-cHHHHHH
Confidence 99998888777663221 1 11233222122 12222 23333 34555555554443221 3456778
Q ss_pred HHHHHHHHHHcCC
Q 017109 336 AEGLALTLQSTGS 348 (377)
Q Consensus 336 ~~~la~~~~~~g~ 348 (377)
+..+|++|.....
T Consensus 231 L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 231 LDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHHH---S
T ss_pred HHHHHHHHCCCCC
Confidence 8888998887543
No 411
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.49 E-value=17 Score=24.26 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....+.+.+|..+...|++++|++.+-.+++.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777789999999999999999999998888765
No 412
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=78.23 E-value=27 Score=26.32 Aligned_cols=104 Identities=11% Similarity=-0.036 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhH
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRI 206 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 206 (377)
..+-..-...|.|.+|..++.+.++. ....+...+|..++.|.....+-..-+.--++..+......++..|..
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFW 170 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFW 170 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchH
Confidence 33444556789999999999999986 445677888888888888776554444444555555554456667877
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
+.+-...+..-.+.|+-.+|++.++..+..
T Consensus 171 atAtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 171 ATATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 777777788888899999999999887765
No 413
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=77.65 E-value=37 Score=27.74 Aligned_cols=183 Identities=10% Similarity=-0.035 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
+..++.+.-+.++|++...+..++.+.... ......-.+.++.+|-. .|....+...+.. ++.-+...+ ..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~-----~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~--~~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDS-----EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRG--NE 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccC--ch
Confidence 345777888899999999999998774210 11223334445555542 3555555555544 222111111 11
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHc-----CC-----hhhHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN---IDYADTMYHLATVLYLQ-----GK-----ENDSEAL 271 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~ 271 (377)
. ...+..-|. ..=-++=..+....+.+.....-+.. ......+-..|..|... |+ .+.|...
T Consensus 76 ~----~~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 D----HVASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred H----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 0 011111111 11122344556666666655433321 11222233344444322 22 4588999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHH
Q 017109 272 FLESIRILEENGEGDSMTCIRRLRYLAQTYV-KANRLTDAETVQRKILHIM 321 (377)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 321 (377)
|++|.++......+.+|.......+.+..|. -.+++++|....++++.-.
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999887666777777766677766655 4699999998888777654
No 414
>PF13041 PPR_2: PPR repeat family
Probab=77.56 E-value=7.4 Score=22.27 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.+|+.+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 57888999999999999999999998754
No 415
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=77.53 E-value=28 Score=26.21 Aligned_cols=130 Identities=12% Similarity=0.008 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
++-+-|...++..+.. .+....--+...+-..-...|.|.+|...+.+.++. ........+|..++.|
T Consensus 71 ~N~eLa~~tLEnLvt~------snTKikEiA~leqva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTN------SNTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHH
Confidence 4445556666654433 122223334455555667789999999999999886 2344556778888888
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.....+-..-.+--.+..+...-...+..|..+.+-...+..-.+.|.-.+|++.++..+..
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 77665432222222333333322334556777777777788888999999999999887763
No 416
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.52 E-value=17 Score=33.59 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
|..||++....|++..|.+++.++..
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcc
Confidence 44455555555555555555555443
No 417
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=76.71 E-value=6.2 Score=30.53 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=41.3
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 017109 325 KGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 325 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 374 (377)
.+...|.....+.++..-|...|+++-|....+.+++-..+..|.+||++
T Consensus 132 ~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 132 QGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 34556777889999999999999999999999999999999999999974
No 418
>PF13041 PPR_2: PPR repeat family
Probab=76.65 E-value=12 Score=21.41 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
..+++.+-..+.+.|++++|.++|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 356788889999999999999999998864
No 419
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.32 E-value=58 Score=29.24 Aligned_cols=139 Identities=12% Similarity=0.031 Sum_probs=84.7
Q ss_pred CCchhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhh-----HHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRK-LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEND-----SEALFLE 274 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~ 274 (377)
.|....+.-+...|.-+++.|. -++|+..++.++... +....+.+ ..... -...|.+ ++..+-+
T Consensus 373 iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--------~yD~ec~n-~v~~f-vKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 373 IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--------NYDIECEN-IVFLF-VKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--------cccHHHHH-HHHHH-HHHHHHHHHhhhhHHHHHH
Confidence 3455566667778888999988 788999999888774 11111111 11111 1112222 3333333
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHH--HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHH
Q 017109 275 SIRILEENGEGD-SMTCIRRLRYL--AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLME 351 (377)
Q Consensus 275 al~~~~~~~~~~-~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 351 (377)
......+.+.+. ........+.+ |..+..+|+|.++.-+-.-..++. | ...++..+|.+.....+|++
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--------P-S~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--------P-SPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--------C-cHHHHHHHHHHHHHHhhHHH
Confidence 333334433221 11112233334 456778999999988877777764 3 37899999999999999999
Q ss_pred HHHHHHH
Q 017109 352 AQELFER 358 (377)
Q Consensus 352 A~~~~~~ 358 (377)
|-.++..
T Consensus 514 A~~~l~~ 520 (549)
T PF07079_consen 514 AWEYLQK 520 (549)
T ss_pred HHHHHHh
Confidence 9988753
No 420
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.29 E-value=44 Score=27.82 Aligned_cols=142 Identities=9% Similarity=0.065 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC--C---chhHHHHHHHHH-HHHHHccCHHHHHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP--E---DIRIGVAFHNLG-QFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~---~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
...+..-++...-..||..|++.++++++........ + ....-..+..+| .++.+++++.+.+...-+-.+.-+
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 3445556677777789999999999999876332111 1 112222333333 456788999998887766555433
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQR 315 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (377)
+. | +.++-.-..+|.+.+++....+.-..=+..-.+...+ .....+-..+-.++.-.|.+++|+++..
T Consensus 115 kl-----P--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp--~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 115 KL-----P--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLP--EYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred cC-----C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCch--hhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 22 2 3334344456788888887777666555431111111 1122223345555666799999988763
No 421
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=75.33 E-value=50 Score=28.05 Aligned_cols=76 Identities=9% Similarity=0.002 Sum_probs=53.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
-.|+...+++..+...+..|+|..|-.++-....+.. +.++....++..--..-.-..+++.|.+-+.+.-+....
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~----~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVS----DPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDS 199 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcC----CcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 3456788999999999999999999888776665532 224434444443333344456899999999888776554
No 422
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=74.56 E-value=39 Score=30.91 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 017109 222 KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTY 301 (377)
Q Consensus 222 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 301 (377)
....|+..|.+++... +.....+.+.+.++.+.+=...+...+.......+ -++....+++.|++++
T Consensus 389 ~~~~~i~~~s~a~q~~--------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr-----ln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYV--------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALR-----LNPSIQKAHFRLARAL 455 (758)
T ss_pred HHHHHHHHHHHHhhhc--------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc-----CChHHHHHHHHHHHHH
Confidence 3445666666666554 55566666777777665444343333333322211 2455566777888888
Q ss_pred HHhCChhHHHHHHHHHH
Q 017109 302 VKANRLTDAETVQRKIL 318 (377)
Q Consensus 302 ~~~g~~~~A~~~~~~al 318 (377)
...+++.+|+.+...+.
T Consensus 456 ~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 456 NELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHhhHHHhhhhHHHHh
Confidence 88888888877765443
No 423
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.97 E-value=1.1e+02 Score=31.26 Aligned_cols=185 Identities=15% Similarity=0.024 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH---------h---------cCC--CchhH-HHHHHHHHHHHHHccCH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQE---------S---------FGP--EDIRI-GVAFHNLGQFYLVQRKL 223 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~---------~~~--~~~~~-~~~~~~la~~~~~~g~~ 223 (377)
....+.+|.+|...|+..+|+.+|.+|..-..+ . .|. ..+.. ...|...-+++..-+-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 445677899999999999999999998753211 0 000 01111 22333344444555555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 017109 224 EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK 303 (377)
Q Consensus 224 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 303 (377)
+.+.+...+|++.. +++.|..+..+.++=.-+...|.+-+|...+-+ .++....-.++..+..++++
T Consensus 1000 E~vcQlA~~AIe~l----~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENL----PDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHHHHHHhC----CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHHh
Confidence 66666666665554 556677777777777777778877777654432 22344445567777888888
Q ss_pred hCChhHHHH-----HHHHHHH-HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Q 017109 304 ANRLTDAET-----VQRKILH-IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQE-LFERCLEA 362 (377)
Q Consensus 304 ~g~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 362 (377)
.|+.+.=.+ +-++... +.++............|..|-..+...+++.+|-. +|+.+..+
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 887653221 1122222 11111111122223445555566778888877654 45555554
No 424
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.89 E-value=54 Score=27.31 Aligned_cols=142 Identities=10% Similarity=0.044 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC-----HhHHHHHHHHH-HHHHHhcCHhHHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERD-----PHVASACNNLA-ELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
....+-.-+....-..||..|++.++++++.......... .+.--.+.-+| .++..++++.+...+.-+-...-
T Consensus 34 a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p 113 (309)
T PF07163_consen 34 AVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 3455666677888889999999999999987633211111 12222233333 36778899999888877666543
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChhhHHHHHH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY-ADTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
++. . ..+.-.-...|.+.|++....+.-..-+..-. +..-+.. ..+-..+-.++.=.|.+++|.++..
T Consensus 114 Ekl----P---pkIleLCILLysKv~Ep~amlev~~~WL~~p~---Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 114 EKL----P---PKILELCILLYSKVQEPAAMLEVASAWLQDPS---NQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ccC----C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc---cCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 332 2 23344444568889998888777666554421 1111211 2233344455566899999988763
No 425
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=72.24 E-value=11 Score=19.03 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
+|..+...+.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888899999999999999988665
No 426
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=72.03 E-value=24 Score=22.88 Aligned_cols=34 Identities=12% Similarity=-0.079 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
.+...|..+-..|+.++|+.+|++++....+...
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 3444555555678999999999999988866543
No 427
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=71.61 E-value=47 Score=26.84 Aligned_cols=109 Identities=15% Similarity=0.042 Sum_probs=65.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC----HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERD----PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
+-...+..|+++.|+++...+++.-......-. ...++-...-+......|+.-+. .+......+. ....-.+.
T Consensus 89 ~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~ 166 (230)
T PHA02537 89 VMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDE 166 (230)
T ss_pred eeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChH
Confidence 334567889999999999999986433311111 11234444445555556653222 1233333333 22233345
Q ss_pred hHHHHHHHHHHHHH---------HccCHHHHHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYL---------VQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 205 ~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~ 239 (377)
..+..+-..|..+. ..++...|+.++++|+++..+
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 56677778888774 456888999999999998643
No 428
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.23 E-value=25 Score=22.64 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
..+...|.-.-..|+|++|+.+|.++++.+..
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 44555666677889999999999999998755
No 429
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=71.19 E-value=41 Score=25.24 Aligned_cols=111 Identities=10% Similarity=0.014 Sum_probs=69.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc------C-----------------------CC--ChhHHHHHHHHHHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVL------G-----------------------HG--NIDYADTMYHLATV 258 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~-----------------------~~--~~~~~~~~~~la~~ 258 (377)
....+......|+.++|...+.++........ . ++ ...........+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 44567788889999999999999987664210 0 00 12234456677888
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 259 LYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....|+...|.+.++.+-.-..-....-+..........+..+...|++.+|...+..++.-
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 88999999998887764321000000011233344567788899999999999999988753
No 430
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.99 E-value=14 Score=19.66 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFE--RCLE 361 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~--~al~ 361 (377)
+.+..+|-.+..+|++++|+..+. -+..
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 346678999999999999999954 5443
No 431
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.89 E-value=14 Score=33.09 Aligned_cols=123 Identities=12% Similarity=0.059 Sum_probs=72.7
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
+..|+.-.|-.-...++... +..+......+.+....|+|+.+...+..+-.+.... + .+...+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~--------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~---~-----~~~~~~ 363 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ--------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT---D-----STLRCR 363 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC--------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC---c-----hHHHHH
Confidence 34566666666665555543 3333344556788899999999998887765543221 1 123334
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
-+-....|++++|.....-.+.- ..+..++...-+-.....|-+++|..++++.+.+.+
T Consensus 364 ~r~~~~l~r~~~a~s~a~~~l~~--------eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 364 LRSLHGLARWREALSTAEMMLSN--------EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHhhhchhhHHHHHHHHHHHhcc--------ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 45566778888887766554421 111123333333344556777888888888877644
No 432
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=70.75 E-value=42 Score=25.19 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-----------------------------CC--CHHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGE-----------------------------GD--SMTCIRRLRYLAQT 300 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~--~~~~~~~~~~la~~ 300 (377)
....++.....|+.++|...+.++...+..... .+ ...........+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 345678888899999999999998876442110 00 12233445667788
Q ss_pred HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 301 YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 301 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
..+.|+...|.+.++.+-.-..-..-.-...........+.-+...|++.+|...+..+++
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8899999999888876532110000000112345566778889999999999999998875
No 433
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.70 E-value=1.2e+02 Score=30.24 Aligned_cols=183 Identities=15% Similarity=0.083 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHH----Hh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL--EDACTYYERALKIKG----RV 240 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~----~~ 240 (377)
-+..|+.+|...|+.++|++.+.+..+.... .+......+-.+-..+...+.. +-..++-.=.++... +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSD----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccc----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee
Confidence 4678899999999999999999888774210 1122222333333333344433 223222222211110 00
Q ss_pred cCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH--------hCChhHHH
Q 017109 241 LGHGNI-DYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK--------ANRLTDAE 311 (377)
Q Consensus 241 ~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~ 311 (377)
+..+.. .....-.....-+......+-++.|++.++...+... . ..+..++..|.. .++-+++.
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~--~-----~lht~ll~ly~e~v~~~~~~~~kg~e~~ 654 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTS--T-----LLHTVLLKLYLEKVLEQASTDGKGEEAP 654 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccc--h-----HHHHHHHHHHHHHHhhccCchhccccch
Confidence 011011 1111111122334566778888999999887644432 1 112222222221 23344555
Q ss_pred HH--HHHHHHHHHhccCCCChh-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 312 TV--QRKILHIMESSKGWNSLD-------TVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 312 ~~--~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
+. .++.....+.. ...+|. ....+...+.++.+.|+.++|+..+-.-+.
T Consensus 655 E~~~rekl~~~l~~s-~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 655 ETTVREKLLDFLESS-DLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhHHHHHHHHhhhh-cccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 55 33333333222 222222 245667778888899999999988876655
No 434
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=70.13 E-value=93 Score=28.85 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHh--cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 163 HVASACNNLAELYRVK--KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
....++.+||.+-... ..-..++.+|.+++...+..++..+ ..-|..+|..+++.+++.+|+..+-++-+..+.
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677665432 3345679999999999998876444 467888999999999999999999888776643
No 435
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.51 E-value=18 Score=32.35 Aligned_cols=95 Identities=12% Similarity=-0.010 Sum_probs=55.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (377)
....+.+....|+|+.|...+..+-.+.. ....+...+-+.....|++++|....+-.+.- +. ..+.
T Consensus 326 i~l~~~i~~~lg~ye~~~~~~s~~~~~~~--------s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~--ei---e~~e 392 (831)
T PRK15180 326 IQLRSVIFSHLGYYEQAYQDISDVEKIIG--------TTDSTLRCRLRSLHGLARWREALSTAEMMLSN--EI---EDEE 392 (831)
T ss_pred hHHHHHHHHHhhhHHHHHHHhhchhhhhc--------CCchHHHHHHHhhhchhhHHHHHHHHHHHhcc--cc---CChh
Confidence 34567888899999999888776655541 11223444455667778888887766554431 11 1222
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
. ...-+......|-++++..++++.+.+
T Consensus 393 i---~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 393 V---LTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred h---eeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 1 222233334456677777777776655
No 436
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=68.95 E-value=60 Score=26.25 Aligned_cols=106 Identities=10% Similarity=-0.001 Sum_probs=63.9
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 217 YLVQRKLEDACTYYERALKIKGRVLGHGN----IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
.+..|+++.|+++...+++....+...-. ...+.-....+......|+.-+.. +......+.... .-.....+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~-~~~~~~~l~~~~-dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY-FLRVFLDLTTEW-DMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHhcC-CCChHHHHH
Confidence 45789999999999999987533321111 112333444555566667643332 233334443322 223445566
Q ss_pred HHHHHHHHHH---------HhCChhHHHHHHHHHHHHHHhc
Q 017109 293 RLRYLAQTYV---------KANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 293 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~ 324 (377)
.+...|..+. ..++...|+.++++|+++..+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 6777777773 4567889999999999986444
No 437
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=68.93 E-value=60 Score=26.90 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
...+...++=..+...++++.|....++.+.+ .|....-...-|.+|.+.|.+.-|++-+...++.
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34566677777888999999999999999987 5666666778899999999999999999988776
No 438
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.87 E-value=1.4e+02 Score=30.51 Aligned_cols=183 Identities=16% Similarity=0.106 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh------------------CCCC--CHhH-HHHHHHHHHHHHHhcCHhH
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG------------------FGER--DPHV-ASACNNLAELYRVKKAFDK 183 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~--~~~~-~~~~~~la~~~~~~g~~~~ 183 (377)
.-+.+|.+|...|+..+|+.+|.+|..-..+- .|.. .+.. ...|...-.++..-+..+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 45678888999999999999999987532110 0110 1111 2333444455555566666
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 017109 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG 263 (377)
Q Consensus 184 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (377)
+.+...+|++.. ++++|..+..+..+=.-....|.+-+|...+-+- ++......++..+..++...|
T Consensus 1002 vcQlA~~AIe~l----~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 1002 VCQLAVKAIENL----PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHHHHHHHHhC----CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHhcc
Confidence 666666665542 5567777777777777778888887776554332 333444567778888888888
Q ss_pred ChhhHHH-----HHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH-HHHHHHHHH
Q 017109 264 KENDSEA-----LFLESIR-ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE-TVQRKILHI 320 (377)
Q Consensus 264 ~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~ 320 (377)
+.+.-.. +-++... +.+.............|..|=..+...+++.+|- .+|+.+..+
T Consensus 1069 ~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1069 ELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred chHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 7653221 1122222 1222111122222223444445566778887765 446666555
No 439
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=67.82 E-value=1.1e+02 Score=28.63 Aligned_cols=113 Identities=16% Similarity=0.061 Sum_probs=71.2
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH-HHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLE-SIRI 278 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~ 278 (377)
++.++....... ++..+...+....+.-....++... +..+.+..+|+......|....+...+.+ +...
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVN--------PENCPAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcC--------cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455665555555 7777777888777777777766653 66677888888887777766666555544 3333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
.+... .--......+ .++......|+..++.....++.++..+
T Consensus 132 ~~~~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 132 SPDNA-EFLGHLIRFY-QLGRYLKLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred CcchH-HHHhhHHHHH-HHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence 21110 0001122223 3788888889999988888888877533
No 440
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.56 E-value=1.5e+02 Score=29.55 Aligned_cols=185 Identities=14% Similarity=0.054 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH--hHHHHHHHHHHHHHHH----
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF--DKAEPLYLEAIKILQE---- 197 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~---- 197 (377)
.-+..|+..|...|+.++|++.+.+..+-... .+......+-.+-......+.. +-..++..-.++....
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~ 580 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSD----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ 580 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccc----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee
Confidence 34778999999999999999999988763210 1222233333333333333333 3333333333321100
Q ss_pred hcCCCch-hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH--------HcCChhhH
Q 017109 198 SFGPEDI-RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLY--------LQGKENDS 268 (377)
Q Consensus 198 ~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A 268 (377)
.+..++. .....-...-.-|......+-++.|++.++...+.. .......++..|. ..++-+++
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~-------~~~lht~ll~ly~e~v~~~~~~~~kg~e~ 653 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT-------STLLHTVLLKLYLEKVLEQASTDGKGEEA 653 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc-------chHHHHHHHHHHHHHHhhccCchhccccc
Confidence 0000011 111111112223456677788889999887765321 1112222222222 22344566
Q ss_pred HHH--HHHHHHHHHHcCCCCC------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 269 EAL--FLESIRILEENGEGDS------MTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 269 ~~~--~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
.+. .++.....+....-+. ......+...+.++.+.|+.++|+..|-..+.
T Consensus 654 ~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 654 PETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 666 4444444333221111 11234566778888899999999988876664
No 441
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.40 E-value=80 Score=26.36 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=38.3
Q ss_pred HHHHHHHHccCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 212 NLGQFYLVQRKLE-DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 212 ~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
+++.+....+.-+ +=..+.+.+++...+.. ......+..+..+|..+...++..+|..+|-.
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~~-~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEFG-EGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 3444444443322 23455666777765542 22244567788899999999999998887753
No 442
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=64.73 E-value=50 Score=23.74 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 017109 142 AEKLFLSALQEAKEGF-GERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220 (377)
Q Consensus 142 A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 220 (377)
=..++++++..+.... =.+++....++...+... ++..+.|.-.... .--...+..|...|..+...
T Consensus 45 L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~~A~~lE~~ 112 (125)
T smart00777 45 LLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSK------GIGTKLALFYEEWAQLLEAA 112 (125)
T ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC------CcchhhHHHHHHHHHHHHHc
Confidence 3455555555443221 145677778877777653 3345555544432 12344567888899999999
Q ss_pred cCHHHHHHHHHH
Q 017109 221 RKLEDACTYYER 232 (377)
Q Consensus 221 g~~~~A~~~~~~ 232 (377)
|++.+|.+.|+.
T Consensus 113 g~~~~A~~iy~~ 124 (125)
T smart00777 113 GRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHc
Confidence 999999998864
No 443
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.62 E-value=35 Score=21.94 Aligned_cols=33 Identities=18% Similarity=0.011 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKE 155 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 155 (377)
+..+...|.-.-..|+|++|+.+|..+++.+..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344566677778899999999999999998755
No 444
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.60 E-value=83 Score=26.27 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=38.7
Q ss_pred HHHHHHHHhCChh-HHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 296 YLAQTYVKANRLT-DAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 296 ~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
+++.+....+.-+ +=..+.+.+++...+..+ .....+..+..+|..+...++..+|..+|-.
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~~~-~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEFGE-GKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 4444444443332 334566777777665311 1122367888899999999999999888743
No 445
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.00 E-value=19 Score=34.26 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=87.3
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---CChhhHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ---GKENDSEALFLESIRIL 279 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~ 279 (377)
+...+.+..++-..|....+|+.-++..+..-.+-....- .......+..+..+.+. |+-++|+...-.+++
T Consensus 197 ~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~v---ve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve-- 271 (1226)
T KOG4279|consen 197 DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKV---VETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVE-- 271 (1226)
T ss_pred cccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhh---hccCceEEEeeehhcccCCCccHHHHHHHHHHHHH--
Confidence 4455677788888899999998887777665444211100 01111223334444444 455555555544444
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHH---------HhCChhHHHHHHHHHHHHHHhcc---------------CCCChhHHHH
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYV---------KANRLTDAETVQRKILHIMESSK---------------GWNSLDTVIA 335 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~ 335 (377)
..+. -.+ ..++.-|++|. ..+..+.|+++|+++.+.-.... -.+..+...+
T Consensus 272 -~eg~-vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~I 346 (1226)
T KOG4279|consen 272 -KEGP-VAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQI 346 (1226)
T ss_pred -hcCC-CCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHH
Confidence 3321 111 22334455554 34566788899998876522211 1122233445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 336 AEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 336 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
-..|+.++.+.|..++-..|++-+.-+.-+++.+++.
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~ 383 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQ 383 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHH
Confidence 5566677777888877777777666555555555543
No 446
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.85 E-value=35 Score=21.26 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
+..+...|.-.-..|++++|+.+|.++++.....
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445667777888999999999999999876543
No 447
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=61.84 E-value=25 Score=24.74 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 374 (377)
+..+...|..+...|+.+.|.-+|-+.+.+. +.+ +.||+.
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki-~~Hpdy 77 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKI-PKHPDY 77 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCH-CCSCCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHh-hcCccc
Confidence 5667778999999999999999999999999 433 467764
No 448
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.34 E-value=1e+02 Score=29.85 Aligned_cols=181 Identities=15% Similarity=0.104 Sum_probs=93.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHH---HHHHHHHHHHH---hcCHhHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVAS---ACNNLAELYRV---KKAFDKAEPLYLEA 191 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~~---~g~~~~A~~~~~~a 191 (377)
.+....++..++-..|....+|+.-+++.+..-.+ ++....+. +.+..+.++.+ -|+-++|+...-.+
T Consensus 196 p~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i------P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~l 269 (1226)
T KOG4279|consen 196 PDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI------PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPL 269 (1226)
T ss_pred ccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC------cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHH
Confidence 33444566677777888889998887777665444 22222221 22233334433 36667777666555
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHH---------ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 017109 192 IKILQESFGPEDIRIGVAFHNLGQFYLV---------QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ 262 (377)
Q Consensus 192 l~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 262 (377)
++. . |+-.| ..+..-|.+|.. .+..+.|+++|+++.+.. |. ..+-.+++.++...
T Consensus 270 ve~---e-g~vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve--------P~-~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 270 VEK---E-GPVAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE--------PL-EYSGINLATLLRAA 333 (1226)
T ss_pred HHh---c-CCCCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC--------ch-hhccccHHHHHHHh
Confidence 553 2 22222 345555666543 456778888999988774 21 22334566666665
Q ss_pred CC-hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HHhCChhHHHHHHHHHHHH
Q 017109 263 GK-ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTY---VKANRLTDAETVQRKILHI 320 (377)
Q Consensus 263 g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~ 320 (377)
|+ |+...++-.-++++-.-.+..........|...|..+ ...+++.+|+...+...++
T Consensus 334 G~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 334 GEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 54 4555544444443322222111122222222233222 2246777776665555443
No 449
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.52 E-value=2.8e+02 Score=31.06 Aligned_cols=133 Identities=12% Similarity=0.094 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 017109 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218 (377)
Q Consensus 139 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 218 (377)
..+-+-.+++++-..... ..-....+.+|...|.+....|+++.|..+.-+|.+.. ...++...|..++
T Consensus 1645 ~~epILa~RRs~l~~~~~-~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW 1713 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMR-SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLW 1713 (2382)
T ss_pred HHhHHHHHHHHHHHHhcc-ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHH
Confidence 344444455554332111 12245689999999999999999999999998888751 2468899999999
Q ss_pred HccCHHHHHHHHHHHHHHHHHhc-CC--CChh------HHHHHHHHHHHHHHcCCh--hhHHHHHHHHHHHHHHc
Q 017109 219 VQRKLEDACTYYERALKIKGRVL-GH--GNID------YADTMYHLATVLYLQGKE--NDSEALFLESIRILEEN 282 (377)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~~~-~~--~~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~ 282 (377)
.+|+-..|+..+++.++...... ++ +.|. ...+...++......|++ ++-+.+|.++.++.++.
T Consensus 1714 ~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1714 QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 99999999999999997764321 11 0011 122344455555555553 34567788888876643
No 450
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=60.31 E-value=2.1e+02 Score=29.45 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH------HHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 211 HNLGQFYLVQRKLEDACTYYERALKI------KGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 211 ~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
..-|..|...|+.++|+..|+.+... ..+...+ .......-..|+.-+..++++-+|-+...+.+.
T Consensus 956 ~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 956 DEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 34466677778888888777655433 3222211 122222335677777788888888777766554
No 451
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.23 E-value=1.5e+02 Score=27.71 Aligned_cols=175 Identities=12% Similarity=0.078 Sum_probs=100.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhh----CCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC---------
Q 017109 136 QGKLAEAEKLFLSALQEAKEG----FGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE--------- 202 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 202 (377)
...|++|...|.-+.....-. .-.++|.....+..++.++..+|+.+-|....++++-..+....+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 455778888887776653211 0023577889999999999999999999999999998777654322
Q ss_pred -------chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 203 -------DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG-NIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 203 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
+.....+.+..-..+.+.|-+..|.++.+-.+.+- +. +|. .+.+.+-....+..+|.=-++.++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd-----p~eDPl--~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD-----PSEDPL--GILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-----CcCCch--hHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22233344444555667788889988888777663 21 232 1222222333344455444444443
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC---hhHHHHHHHHHHHHH
Q 017109 275 SIRILEENGEGDSMTCIRRLRYLAQTYVKANR---LTDAETVQRKILHIM 321 (377)
Q Consensus 275 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 321 (377)
.-.. .... ..|.... -..+|..|..... -..|...+.+|+...
T Consensus 404 ~e~~-n~l~--~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 404 PENM-NKLS--QLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHhh-ccHh--hcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 3221 1000 1111111 1235566665554 456777777777653
No 452
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.13 E-value=39 Score=21.00 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
..+...|.-.-..|++++|+.+|.++++....
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34455666677789999999999999988744
No 453
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.05 E-value=51 Score=30.73 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.-|..||......|++..|.+++.++.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 457889999999999999999999987663
No 454
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.87 E-value=87 Score=25.17 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=44.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 131 RDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
.-+...+...+|+...+.-++. .|........+-.++.-.|++++|..-++-+-.+
T Consensus 9 seLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3456778888898888776654 5666777778888999999999999988877766
No 455
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.53 E-value=1.4e+02 Score=27.26 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHHHhcCCC
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA-FDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 202 (377)
..|..-.......+.+.+--..|.+++.. +|..+..+..-|.-.+..+. .+.|...+.+++.. .|+
T Consensus 106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~-----npd 172 (568)
T KOG2396|consen 106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAK--------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF-----NPD 172 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc-----CCC
Confidence 45555555556666688888899999887 77888888887777776665 99999999999987 567
Q ss_pred chhHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFY 217 (377)
Q Consensus 203 ~~~~~~~~~~la~~~ 217 (377)
.|.+...|..+-..+
T Consensus 173 sp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 173 SPKLWKEYFRMELMY 187 (568)
T ss_pred ChHHHHHHHHHHHHH
Confidence 776666665554443
No 456
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=57.67 E-value=48 Score=25.70 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
...+.....+.++..-|..+|++.-|....+.+++-..+..|.+||+
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~ 180 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPD 180 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccC
Confidence 35677788899999999999999999999999999998888888874
No 457
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=56.40 E-value=52 Score=21.21 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
..+...|.-.-..|++++|+.+|.++++.+...
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 344455566667899999999999999987553
No 458
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.28 E-value=45 Score=28.84 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.......++......+.....+....+++....... .....++..+-.+....++|..+..++.--+.-..+..+.
T Consensus 101 f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~----~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h 176 (422)
T KOG2582|consen 101 FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSN----GQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPH 176 (422)
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCc----cchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCC
Confidence 345566778877888888888888888888755432 2344566677777888888888887776543332222233
Q ss_pred CChhHHH-HHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 244 GNIDYAD-TMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 244 ~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.++...- .++.-|.++...++++.|+.+|+.++-+
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 3344333 3344567888999999999999887754
No 459
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.16 E-value=55 Score=20.85 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=22.4
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
..|.-+-..|++++|+.+|..+++.+...
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34455556799999999999999887553
No 460
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.84 E-value=92 Score=24.30 Aligned_cols=56 Identities=14% Similarity=0.022 Sum_probs=39.1
Q ss_pred HhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 303 KANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
..++.+......+.+.+..+.. | ...++..++.++...|+.++|.....++..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~-----P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRR-----P-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhC-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444444332 1 267888899999999999999999999988766
No 461
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.48 E-value=58 Score=28.24 Aligned_cols=109 Identities=11% Similarity=-0.024 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH-HHHHHcCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI-RILEENGEG 285 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~ 285 (377)
......++......+.....+....+++....... .....+...+..+..+.++|.-+..++..-+ +++... +.
T Consensus 102 ~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~----~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n-~h 176 (422)
T KOG2582|consen 102 FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSN----GQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKAN-PH 176 (422)
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCc----cchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccC-CC
Confidence 34556677777778888888888888888764321 2344556667777888888888877766433 333332 22
Q ss_pred CCHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 286 DSMT-CIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 286 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.++. ....++.-|.++...++++.|+.+|..++.+
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 3333 3344455577888999999999999988754
No 462
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.25 E-value=1.5e+02 Score=25.44 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-------
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG------- 242 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 242 (377)
.+...-.+..+..+-++....++++ ++..+.+|..++.- ...-..+|+..++++++..+....
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh 258 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQH 258 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3344444455666667777777776 34445566655542 223456778888887766432211
Q ss_pred ----------CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC
Q 017109 243 ----------HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306 (377)
Q Consensus 243 ----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (377)
.|......+-..++.+..++|+..+|.+.++...+-. .-.....+..++-..+....-
T Consensus 259 ~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~------pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 259 QSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF------PLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred hccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc------cHHHHHHHHHHHHHHHHHHHH
Confidence 0111123344566777777777777777776654421 122333444555555554433
No 463
>PRK09169 hypothetical protein; Validated
Probab=51.56 E-value=2.9e+02 Score=31.00 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-------HHHHHHHHHHHHHH
Q 017109 295 RYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-------TVIAAEGLALTLQS 345 (377)
Q Consensus 295 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~ 345 (377)
..++..+....++.+.-.+-+-++.+....+....|. ...+.+.++++...
T Consensus 751 Q~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p~~~f~~~~laq~aNa~aR~~~~ 808 (2316)
T PRK09169 751 QGLANSLNALSKWPQEPACQQAALLLAERLGSAGLPFRTFTMAGLAQLANAMARLILK 808 (2316)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCchhhcCHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666666666654444443 34455555555543
No 464
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=50.72 E-value=66 Score=20.73 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
+.-+...|.-.-..|++++|+.+|.++++.+...
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3445566777788999999999999999987654
No 465
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=49.44 E-value=1e+02 Score=26.98 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=62.0
Q ss_pred CChhhHHHHHHHHHHHHHHcCCC-CCHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh-----hH
Q 017109 263 GKENDSEALFLESIRILEENGEG-DSMT----CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL-----DT 332 (377)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~~~~-~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~ 332 (377)
...+++-..+.++.........+ ..+. .....+.+-.+|.+.++++-+...++.. +...+++.+ +.
T Consensus 144 d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~----~~vs~~Di~~~~~sq~ 219 (413)
T COG5600 144 DNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKAS----KEVSMPDISEYQKSQV 219 (413)
T ss_pred hhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc----ccccccccchhhhcce
Confidence 33445555555555554433222 1122 2223345667888999988766555433 223333333 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
....+.+|.+|.-..++.+|...+.++....+..
T Consensus 220 v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l 253 (413)
T COG5600 220 VVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWL 253 (413)
T ss_pred eehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhh
Confidence 5667889999999999999999999998877764
No 466
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=48.94 E-value=2.2e+02 Score=26.31 Aligned_cols=203 Identities=16% Similarity=0.076 Sum_probs=105.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 017109 129 SGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV 208 (377)
Q Consensus 129 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 208 (377)
+-.++....++.--...+.+.+.. ...-.++..++.+|... ..++-....++.++.. .....
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--------fnDvv 133 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--------FNDVV 133 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--------chhHH
Confidence 334444444555556667777765 12345778888888887 4566666777776651 22234
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSM 288 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 288 (377)
.-..++..|.. ++-+++..+|.+++...-.. ......-..+..+-. .--.+.+. .+....++....+. .
T Consensus 134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~--~q~~~i~evWeKL~~--~i~dD~D~---fl~l~~kiqt~lg~-~-- 202 (711)
T COG1747 134 IGRELADKYEK-IKKSKAAEFFGKALYRFIPR--RQNAAIKEVWEKLPE--LIGDDKDF---FLRLQKKIQTKLGE-G-- 202 (711)
T ss_pred HHHHHHHHHHH-hchhhHHHHHHHHHHHhcch--hhhhhHHHHHHHHHH--hccccHHH---HHHHHHHHHHhhcc-c--
Confidence 44566776665 88899999999998765210 000111122222211 11222332 22222333333221 1
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc--------------cCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 017109 289 TCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS--------------KGWNSLDTVIAAEGLALTLQSTGSLMEAQE 354 (377)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 354 (377)
....++..+-.-|....++++|++.+...++..++. +.. ....+-|..++.+-..-.++.+++.
T Consensus 203 ~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~--~~~~e~yl~~s~i~~~~rnf~~~l~ 280 (711)
T COG1747 203 RGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRG--HSQLEEYLKISNISQSGRNFFEALN 280 (711)
T ss_pred hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhcc--chhHHHHHHhcchhhccccHHHHHH
Confidence 111223334455667788888888888666543221 100 0113334444444444556667776
Q ss_pred HHHHHHHH
Q 017109 355 LFERCLEA 362 (377)
Q Consensus 355 ~~~~al~~ 362 (377)
-|++.+..
T Consensus 281 dFek~m~f 288 (711)
T COG1747 281 DFEKLMHF 288 (711)
T ss_pred HHHHHhee
Confidence 66666543
No 467
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=48.82 E-value=1.6e+02 Score=24.57 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
........++=..+...++++.|..+.++.+.+ +|.++ .-....|.+|.+.|.+.-|+.-+...++.+
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l-----~P~dp---~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDL-----NPEDP---YEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh-----CCCCh---hhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 345677778888999999999999999999998 44443 445678999999999999999999988776
No 468
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.39 E-value=34 Score=16.71 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHHHHHHH
Q 017109 221 RKLEDACTYYERALKIK 237 (377)
Q Consensus 221 g~~~~A~~~~~~al~~~ 237 (377)
|+++.+...|++++...
T Consensus 1 ~~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 1 GDIERARKIYERALEKF 17 (33)
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 56788899999998775
No 469
>PRK12798 chemotaxis protein; Reviewed
Probab=47.64 E-value=2.1e+02 Score=25.62 Aligned_cols=171 Identities=13% Similarity=0.032 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
.-|..-+-.|+-.++.+.+...-.. ..++.+.-......-..+...+..+|+.+|..+--. .|.....-
T Consensus 117 ~~g~laY~~Gr~~~a~~~La~i~~~------~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl-----aPGTLvEE 185 (421)
T PRK12798 117 ADGALAYLSGRGREARKLLAGVAPE------YLPAELGAYLALVQGNLMVATDPATALKLLDQARLL-----APGTLVEE 185 (421)
T ss_pred HHHHHHHHcCCHHHHHHHhhcCChh------hcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh-----CCchHHHH
Confidence 3455666788888888777665432 112223222223333445567899999999988665 22222222
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.++..--.+....|+.++...+-.+-+..+.. ++.........+......++-.. ...+...+.. . +.
T Consensus 186 AALRRsi~la~~~g~~~rf~~la~~Y~rRF~~-----S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~---~---d~ 253 (421)
T PRK12798 186 AALRRSLFIAAQLGDADKFEALARNYLRRFRH-----SPYASQFAQRFVDLVVRLDDEIR-DARLVEILSF---M---DP 253 (421)
T ss_pred HHHHHhhHHHHhcCcHHHHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHHhcccccc-HHHHHHHHHh---c---Cc
Confidence 34444445567889999988888777766532 24444444444444444442221 1223333332 2 34
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.....+|..++..-.-.|+.+-|.-.-++++.+.
T Consensus 254 ~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 254 ERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 4556678889999999999999999999998886
No 470
>PRK09169 hypothetical protein; Validated
Probab=47.39 E-value=4.6e+02 Score=29.57 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=14.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 339 LALTLQSTGSLMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 339 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
++..+....++.+.-.+-+-++.+....-...+|
T Consensus 753 lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p 786 (2316)
T PRK09169 753 LANSLNALSKWPQEPACQQAALLLAERLGSAGLP 786 (2316)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCc
Confidence 3333333333443444444444444444333444
No 471
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=47.29 E-value=58 Score=27.62 Aligned_cols=83 Identities=11% Similarity=0.223 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH-HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN-LAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...|...+......|-+.+--..|.+++.. +|..++.|.. -+.-+...++++.+...+.+++.. .+
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--------hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~-----N~ 173 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTK--------HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM-----NS 173 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc-----CC
Confidence 355666666666777788888888888876 7777776655 455677889999999999999998 56
Q ss_pred CchhHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYL 218 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~ 218 (377)
+.|.....|..+-..|.
T Consensus 174 ~~p~iw~eyfr~El~yi 190 (435)
T COG5191 174 RSPRIWIEYFRMELMYI 190 (435)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 67766666666655554
No 472
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=47.16 E-value=66 Score=28.30 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH-----HHHHHHHHHHHHHHHH
Q 017109 183 KAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL-----EDACTYYERALKIKGR 239 (377)
Q Consensus 183 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~al~~~~~ 239 (377)
.|..+.++|++..++....+.| .+|..+|.++...|+. .+-..+|++|.++..+
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddP---etWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDP---ETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKK 387 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--T---THHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCh---hHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence 3556666666666655444444 3455555555555532 1234556666555544
No 473
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.43 E-value=76 Score=20.21 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
.-+...|.-.-..|++++|+.+|..+++.+...
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345556666778899999999999999987654
No 474
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=45.86 E-value=77 Score=20.15 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=23.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+...|.-+-..|++++|+.+|.++++.+...
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3344555566899999999999999987653
No 475
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=45.69 E-value=2.2e+02 Score=25.25 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhC-----CCCCHhHHHHHHHHHHHHHHh----cCHhHHHHHHHHHHHHHHHhcCCCchh--
Q 017109 137 GKLAEAEKLFLSALQEAKEGF-----GERDPHVASACNNLAELYRVK----KAFDKAEPLYLEAIKILQESFGPEDIR-- 205 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~-- 205 (377)
.++++|..+|..+.....+.. .+.-...+.+...++.+|... ++.+.-....++-+++.+.....-++.
T Consensus 138 ~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y 217 (371)
T PF12309_consen 138 LDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYY 217 (371)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 467777777776666554431 122233456666666665544 556666666666666655443222221
Q ss_pred ---HHHHHHHHHHHHH-------HccC--------------------HHHHHHHHHHHHHHHHHhc-C--C------CCh
Q 017109 206 ---IGVAFHNLGQFYL-------VQRK--------------------LEDACTYYERALKIKGRVL-G--H------GNI 246 (377)
Q Consensus 206 ---~~~~~~~la~~~~-------~~g~--------------------~~~A~~~~~~al~~~~~~~-~--~------~~~ 246 (377)
.-..++.+|.+|. ...+ ...|+.+|+.-++...... + + ...
T Consensus 218 ~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~ 297 (371)
T PF12309_consen 218 LNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELR 297 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHH
Confidence 1223344444443 2222 2346666666666654221 0 0 012
Q ss_pred hHHHHHHHHHHHHHHc--CCh-------hhHHHHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQ--GKE-------NDSEALFLESIRILEE 281 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~--g~~-------~~A~~~~~~al~~~~~ 281 (377)
....+++.+|++|.+. ++. ..++.+|+.++..+..
T Consensus 298 ~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~ 341 (371)
T PF12309_consen 298 PYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEK 341 (371)
T ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888899998776 344 4444455554444443
No 476
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=45.57 E-value=1.2e+02 Score=22.23 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=33.3
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 259 LYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...+|+-++-.+.+....+ +....+..+..+|.+|.+.|+..+|.+++.+|-+.
T Consensus 96 lv~~~kkDqLdki~~~l~k--------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKK--------NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHhh--------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4455665555555554432 11123345788999999999999999999988753
No 477
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.51 E-value=1.1e+02 Score=21.96 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 268 SEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 268 A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
=..+++++++.+... .-.+++....++...+... ++ +.+.|...... ..| ...+..+...|..+...
T Consensus 45 L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~---~IG---~~~AlfYe~~A~~lE~~ 112 (125)
T smart00777 45 LLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSK---GIG---TKLALFYEEWAQLLEAA 112 (125)
T ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC---Ccc---hhhHHHHHHHHHHHHHc
Confidence 355666666654432 1235667777777777653 33 44555543321 112 23477888899999999
Q ss_pred CCHHHHHHHHHH
Q 017109 347 GSLMEAQELFER 358 (377)
Q Consensus 347 g~~~~A~~~~~~ 358 (377)
|++.+|.+.|+.
T Consensus 113 g~~~~A~~iy~~ 124 (125)
T smart00777 113 GRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHc
Confidence 999999998864
No 478
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=43.21 E-value=47 Score=16.86 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQ----GKLAEAEKLFLSALQ 151 (377)
Q Consensus 124 ~~~~~l~~~~~~~----g~~~~A~~~~~~al~ 151 (377)
.+.+.+|.+|..- .+..+|..+++++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3456777777643 388999999998875
No 479
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=41.99 E-value=91 Score=19.85 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=23.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+...|.-.-..|++++|+.+|.++++.+...
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3444555567899999999999999987553
No 480
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=41.12 E-value=1.4e+02 Score=21.86 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=26.9
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
....+..+..+|.+|...|+..++.+.+.+|-+.
T Consensus 116 ~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3455778889999999999999999999998774
No 481
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=40.80 E-value=96 Score=25.64 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=46.0
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 262 QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
.-....|.+++.+|+-..+..+ +......+....+..|+...+|+.|..+|..|.......
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae~r~--D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 52 DATMENAKELLDKALMTAEGRG--DRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred ccChhhHHHHHHHHHHhhhccC--CcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3456788999999998877765 433444445566778888999999999999999886543
No 482
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.51 E-value=63 Score=31.61 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=44.9
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.+=.+|...|+|+.|+++.+..-.. .-.++...|+.+...++|..|.++|.+..+-.++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~~-----------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPDA-----------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 3457899999999988877654111 2457788899999999999999999887665554
No 483
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=40.04 E-value=67 Score=22.58 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
..+..+...|..+...|+.+.|--+|.+.+.+.+.+
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki 71 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI 71 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 356778888999999999999999999999998555
No 484
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=39.29 E-value=3.2e+02 Score=25.38 Aligned_cols=100 Identities=17% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
..|..+-.-|...+++++|+...+-.-+ ...+..+|-+.....+..-++..|..+.++-+-.....-
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv~e-------------qTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~i 640 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFVQE-------------QTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHI 640 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhccc-------------hHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHH
Confidence 3455556667788899998887764321 123444555555555555555555444443211100000
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.....--..+|......|+..+|...+.++-.+
T Consensus 641 K~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~ 673 (737)
T KOG1524|consen 641 KALTSKEEQMAENSLMLGRMLEAETILLHGGLI 673 (737)
T ss_pred hccCcHHHHHHHHHHHhccchhhhHHHHhcchH
Confidence 000112345677777788888888877665444
No 485
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=38.41 E-value=10 Score=35.16 Aligned_cols=107 Identities=11% Similarity=-0.056 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
+........-+..+...|++..|...+.+.-... . ............|.+....|++++|+..+... ... ..
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~--L---~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~-~~~--~l 92 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQ--L---SPSQQARYQLLRARLALAQGDPEQALSLLNAQ-DLW--QL 92 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccc--C---ChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC-Ccc--cC
Confidence 3345566677889999999999999888765211 0 11223334556788999999999999998751 111 11
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 326 GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 326 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
. .......+...+.++...|++-+|...+-..-.+
T Consensus 93 ~--~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 93 P--PEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp -------------------------------------
T ss_pred C--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 1 1223566777899999999988887766554443
No 486
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=38.30 E-value=50 Score=28.46 Aligned_cols=106 Identities=20% Similarity=0.091 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC------C-----CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE------R-----DPHVASACNNLAELYRVKKAFDKAEPLYLEAI 192 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 192 (377)
......|...+..++++.|..-+.+++......... + .........+++.+-...+.+..|+.....++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 344456777899999999999999998876531100 0 11223455667778888888888877766666
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 193 KILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.. .+....+++..+..+....++++|++.++.+....
T Consensus 303 ~~--------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 303 RD--------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred cc--------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence 52 34446789999999999999999999999887664
No 487
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.33 E-value=2e+02 Score=22.57 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH----HHHcCC
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI----LEENGE 284 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~ 284 (377)
-+...+......|++++|...++++.+...++... .......+.-|.+-..+..|.+|..++.-...- ..+.+
T Consensus 31 r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~--l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~- 107 (204)
T COG2178 31 RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRL--LAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELG- 107 (204)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcC-
Confidence 34556667778899999999999998876554210 000111222233333444566665554332211 11111
Q ss_pred CCCHHHHHHHHHH----------HHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 285 GDSMTCIRRLRYL----------AQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 285 ~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
.+.. .....+ .......|++++|...++-.-.+......-+.|
T Consensus 108 --V~~~-~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP 160 (204)
T COG2178 108 --VPPI-AYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYP 160 (204)
T ss_pred --CCHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 0011 111122 233456799999999988777776655444444
No 488
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.67 E-value=2e+02 Score=22.37 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=38.3
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 219 VQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
...+.+......+-+.+..+. .-....+..++.++...|+.++|....+++..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~------~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRR------RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444444444444444444321 12356788899999999999999999999988754
No 489
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=36.34 E-value=4e+02 Score=25.63 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred ccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC-------HhHHHH
Q 017109 114 VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA-------FDKAEP 186 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~ 186 (377)
.+..+....-.+....|.-....|++.+|+.+|.-+-+. +.........|+.+...... -+.-..
T Consensus 405 ~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~--------d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~ 476 (613)
T PF04097_consen 405 KFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEY--------DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIE 476 (613)
T ss_dssp T-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-H--------HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhH--------HHHHHHHHHHHHHHHcCccccccccchhhhHHH
Q ss_pred HHHHHHHHHHHhcCC---CchhHHHHHHHHHHH-----HHHccCHHHHHHHHHH
Q 017109 187 LYLEAIKILQESFGP---EDIRIGVAFHNLGQF-----YLVQRKLEDACTYYER 232 (377)
Q Consensus 187 ~~~~al~~~~~~~~~---~~~~~~~~~~~la~~-----~~~~g~~~~A~~~~~~ 232 (377)
......+.+...... -+.....++..|-.+ +...|++++|++.+++
T Consensus 477 la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~ 530 (613)
T PF04097_consen 477 LAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK 530 (613)
T ss_dssp HHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 490
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=36.33 E-value=86 Score=27.63 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCh-----hHHHHHHHHHHHHHHhc
Q 017109 267 DSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL-----TDAETVQRKILHIMESS 324 (377)
Q Consensus 267 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~al~~~~~~ 324 (377)
.|..+.++|++..++....+.| .+|..+|.++...|+. .+-..+|.+|.++..+.
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddP---etWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDP---ETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKA 388 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--T---THHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCh---hHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 4555666666555544322222 2345555555555432 22345666666665443
No 491
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=35.73 E-value=4.5e+02 Score=26.04 Aligned_cols=205 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred hhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHH
Q 017109 105 GLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKA 184 (377)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 184 (377)
...+......+.+..|..+.-|..--......++-.+....|++++.-.... +.....+......+..+...++++.-
T Consensus 132 l~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v--~iw~e~~~y~~~~~~~~~~~~d~k~~ 209 (881)
T KOG0128|consen 132 LRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV--PIWEEVVNYLVGFGNVAKKSEDYKKE 209 (881)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc--hHHHHHHHHHHhccccccccccchhh
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH---HHHHH
Q 017109 185 EPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA---TVLYL 261 (377)
Q Consensus 185 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la---~~~~~ 261 (377)
...+.+++........ ........+......|...-..++-+.++...+.. +-+.......+.... .....
T Consensus 210 R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~-----~~D~~~~~~~~~~~sk~h~~~~~ 283 (881)
T KOG0128|consen 210 RSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ-----PLDEDTRGWDLSEQSKAHVYDVE 283 (881)
T ss_pred hHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----cchhhhhHHHHHHHHhcchHHHH
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 262 QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
..+++.|..-+.+.+...+.. ....+.....+..+-......|++..-...+++++
T Consensus 284 ~~~~~~a~~~l~~~~~~~e~~-~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 284 TKKLDDALKNLAKILFKFERL-VQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred hccHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
No 492
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=35.44 E-value=69 Score=16.60 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=17.4
Q ss_pred HHHHHHH--HHHHHhc-----CHhHHHHHHHHHHH
Q 017109 166 SACNNLA--ELYRVKK-----AFDKAEPLYLEAIK 193 (377)
Q Consensus 166 ~~~~~la--~~~~~~g-----~~~~A~~~~~~al~ 193 (377)
.+.+.+| .++..-. ++++|..+++++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4556677 4433332 46788888888765
No 493
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=35.40 E-value=5.4e+02 Score=26.83 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=28.7
Q ss_pred HHHHHHcCChhhHHHHHHHH------HHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 256 ATVLYLQGKENDSEALFLES------IRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
|..|...|+.++|+..|+.+ +.+..+...+.. .....-..|+.-+..++++-+|-+...+.+
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKD-ELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 44555556666665555432 233332221111 111122345555666666666666555544
No 494
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.76 E-value=96 Score=18.95 Aligned_cols=59 Identities=14% Similarity=-0.000 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYY 230 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 230 (377)
.-+..+...|+|=+|-+.++..-..... +......+.+....|....+.|+...|...+
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~--~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPG--PERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-C--CHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCc--chHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 3456677889999999988887652110 0112233445555566677889988887653
No 495
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=34.01 E-value=1.2e+02 Score=25.05 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
.-....|.+++..|+-.++.. .+...+..+.+..+..|+...+|+.|..+|..|...+..
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae~r--~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 52 DATMENAKELLDKALMTAEGR--GDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred ccChhhHHHHHHHHHHhhhcc--CCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 345678999999999887665 445556667777888999999999999999999998654
No 496
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.23 E-value=1.3e+02 Score=19.26 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=18.6
Q ss_pred HhCChhHHHHHHHHHHHHHHh
Q 017109 303 KANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 303 ~~g~~~~A~~~~~~al~~~~~ 323 (377)
..|++++|+.+|..+++.+..
T Consensus 18 ~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 469999999999999998866
No 497
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=3.5e+02 Score=24.26 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHH
Q 017109 183 KAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI-DYADTMYHLATVLYL 261 (377)
Q Consensus 183 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~ 261 (377)
.+....+.+.+- +.+..+.|.++-..+++++|+.+|++++.+..+-..-..+ .....--..-..+..
T Consensus 10 ~~~a~Ir~ayk~------------A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcal 77 (560)
T KOG2709|consen 10 PDTAQIRAAYKG------------AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACAL 77 (560)
T ss_pred hHHHHHHHHHHH------------HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHH
Q ss_pred cCChhhHHHHHHHHHHHHHH
Q 017109 262 QGKENDSEALFLESIRILEE 281 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~ 281 (377)
..+..++..-.+.-+++.++
T Consensus 78 iQklkes~~~vr~Rl~vL~k 97 (560)
T KOG2709|consen 78 IQKLKESKSSVRHRLNVLKK 97 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHh
No 498
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=32.93 E-value=3.5e+02 Score=23.92 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI-----RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+.+-.+|.+.++++-+...++.... ...+|.+ ......+.+|.+|....++.+|...+.+|...+..
T Consensus 181 NlL~~iY~Rl~~~~l~~n~lka~~~----vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFLKASKE----VSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHhccc----ccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 4556689999999887766554332 2233332 23456788999999999999999999999887644
No 499
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.64 E-value=2.1e+02 Score=21.19 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF 181 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 181 (377)
+.....+...+..|++.-|.++...++.. +|....+....+.++..+|.-
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~a--------dp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFA--------DPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHHHh
Confidence 44566777788899999999999988876 566666777777777666543
No 500
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.45 E-value=1.3e+02 Score=18.97 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGF 157 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 157 (377)
+...|.-.-..|++++|+.+|..+++.+....
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 44456666778999999999999999876653
Done!