Query 017109
Match_columns 377
No_of_seqs 863 out of 2856
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 09:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nf1_A KLC 1, kinesin light ch 100.0 8.5E-27 2.9E-31 197.6 34.2 251 114-364 18-309 (311)
2 3edt_B KLC 2, kinesin light ch 100.0 9.3E-26 3.2E-30 188.4 28.7 229 134-362 12-281 (283)
3 3ulq_A Response regulator aspa 100.0 5.7E-25 2E-29 192.1 33.3 264 93-372 114-378 (383)
4 3sf4_A G-protein-signaling mod 99.9 2.3E-24 8E-29 189.5 32.1 264 92-366 57-340 (406)
5 4a1s_A PINS, partner of inscut 99.9 3E-24 1E-28 189.4 32.8 262 92-366 58-336 (411)
6 4a1s_A PINS, partner of inscut 99.9 1.6E-24 5.5E-29 191.1 30.6 264 92-366 96-376 (411)
7 3sf4_A G-protein-signaling mod 99.9 5.5E-24 1.9E-28 187.2 32.9 262 92-366 19-300 (406)
8 3ro2_A PINS homolog, G-protein 99.9 2E-24 6.8E-29 184.8 28.9 263 93-366 54-336 (338)
9 3ro2_A PINS homolog, G-protein 99.9 1.2E-23 4.2E-28 179.9 33.3 263 92-367 15-297 (338)
10 3edt_B KLC 2, kinesin light ch 99.9 4.8E-24 1.6E-28 178.0 27.1 229 92-320 11-281 (283)
11 3q15_A PSP28, response regulat 99.9 4E-24 1.4E-28 186.4 27.3 243 121-371 99-374 (378)
12 2pl2_A Hypothetical conserved 99.9 6.9E-25 2.3E-29 175.7 18.9 198 122-360 4-212 (217)
13 4eqf_A PEX5-related protein; a 99.9 9.6E-24 3.3E-28 183.1 22.2 242 92-372 75-320 (365)
14 3ulq_A Response regulator aspa 99.9 3.5E-22 1.2E-26 174.5 27.9 225 124-358 104-331 (383)
15 3nf1_A KLC 1, kinesin light ch 99.9 7.8E-22 2.7E-26 167.0 29.0 209 157-365 19-227 (311)
16 3uq3_A Heat shock protein STI1 99.9 6.4E-22 2.2E-26 162.8 27.5 219 121-366 3-240 (258)
17 1fch_A Peroxisomal targeting s 99.9 3.7E-22 1.3E-26 173.3 24.1 248 92-370 74-367 (368)
18 1w3b_A UDP-N-acetylglucosamine 99.9 3.3E-22 1.1E-26 175.0 23.6 224 95-362 46-300 (388)
19 1w3b_A UDP-N-acetylglucosamine 99.9 3.3E-22 1.1E-26 175.0 22.1 201 122-362 134-334 (388)
20 3hym_B Cell division cycle pro 99.9 1.9E-22 6.3E-27 172.3 19.1 231 93-362 67-299 (330)
21 3u4t_A TPR repeat-containing p 99.9 1.4E-22 4.7E-27 168.4 17.5 237 91-363 12-251 (272)
22 4eqf_A PEX5-related protein; a 99.9 2.5E-22 8.7E-27 174.2 18.5 250 92-370 109-364 (365)
23 1fch_A Peroxisomal targeting s 99.9 1.2E-21 4E-26 170.1 22.5 239 95-369 38-321 (368)
24 2ifu_A Gamma-SNAP; membrane fu 99.9 9.3E-21 3.2E-25 160.0 27.0 247 94-354 3-253 (307)
25 3hym_B Cell division cycle pro 99.9 7.1E-22 2.4E-26 168.7 20.3 235 90-363 30-266 (330)
26 1qqe_A Vesicular transport pro 99.9 1.9E-21 6.4E-26 163.1 21.9 233 119-361 33-268 (292)
27 3q15_A PSP28, response regulat 99.9 1.4E-20 4.7E-25 164.0 25.5 262 92-366 22-294 (378)
28 3cv0_A Peroxisome targeting si 99.9 1.2E-20 4E-25 160.9 24.4 249 92-371 31-324 (327)
29 3vtx_A MAMA; tetratricopeptide 99.9 5.1E-21 1.8E-25 149.1 20.2 168 122-321 4-171 (184)
30 2xpi_A Anaphase-promoting comp 99.9 9E-21 3.1E-25 175.3 25.1 210 120-363 370-580 (597)
31 2ho1_A Type 4 fimbrial biogene 99.9 9.9E-21 3.4E-25 155.3 22.6 205 121-363 35-239 (252)
32 2q7f_A YRRB protein; TPR, prot 99.9 1.5E-21 5.2E-26 159.1 17.6 203 121-363 21-223 (243)
33 2vq2_A PILW, putative fimbrial 99.9 3.6E-20 1.2E-24 149.0 25.1 208 118-362 3-211 (225)
34 2ifu_A Gamma-SNAP; membrane fu 99.9 1.2E-20 3.9E-25 159.5 22.9 221 135-365 3-226 (307)
35 3vtx_A MAMA; tetratricopeptide 99.9 8.4E-21 2.9E-25 147.9 20.2 170 164-365 4-173 (184)
36 2h6f_A Protein farnesyltransfe 99.9 5.3E-21 1.8E-25 165.1 20.8 202 118-359 92-302 (382)
37 4gyw_A UDP-N-acetylglucosamine 99.9 3.3E-21 1.1E-25 179.0 20.4 175 118-324 4-178 (723)
38 1hz4_A MALT regulatory protein 99.9 3.3E-19 1.1E-23 155.0 30.7 261 93-365 25-285 (373)
39 4gyw_A UDP-N-acetylglucosamine 99.9 4.7E-21 1.6E-25 177.9 20.0 175 160-366 4-178 (723)
40 3ieg_A DNAJ homolog subfamily 99.9 2.3E-19 7.7E-24 154.9 28.9 236 93-362 82-335 (359)
41 2pl2_A Hypothetical conserved 99.9 6.9E-21 2.4E-25 152.4 17.9 187 92-318 15-212 (217)
42 4abn_A Tetratricopeptide repea 99.9 1.7E-21 5.8E-26 174.3 15.8 204 118-359 97-318 (474)
43 2h6f_A Protein farnesyltransfe 99.9 5.2E-21 1.8E-25 165.2 17.9 221 93-361 108-347 (382)
44 2y4t_A DNAJ homolog subfamily 99.9 6.9E-20 2.4E-24 163.4 25.3 234 92-362 104-358 (450)
45 3fp2_A TPR repeat-containing p 99.9 1.9E-20 6.6E-25 170.8 21.8 232 92-365 253-494 (537)
46 3qky_A Outer membrane assembly 99.9 4.4E-20 1.5E-24 152.3 21.8 209 120-353 12-252 (261)
47 3ieg_A DNAJ homolog subfamily 99.9 2.1E-19 7.3E-24 155.0 26.5 231 92-363 13-264 (359)
48 4g1t_A Interferon-induced prot 99.9 7.8E-20 2.7E-24 164.1 24.0 222 118-363 46-277 (472)
49 2y4t_A DNAJ homolog subfamily 99.9 1.5E-19 5E-24 161.3 25.1 229 93-362 37-286 (450)
50 1hz4_A MALT regulatory protein 99.9 4.8E-19 1.7E-23 154.0 27.1 262 93-365 64-325 (373)
51 1qqe_A Vesicular transport pro 99.9 1.3E-19 4.4E-24 151.9 22.4 188 172-366 44-232 (292)
52 3fp2_A TPR repeat-containing p 99.8 5.8E-20 2E-24 167.6 20.6 232 96-362 216-457 (537)
53 3cv0_A Peroxisome targeting si 99.8 6.5E-19 2.2E-23 150.0 24.3 214 121-366 19-273 (327)
54 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.7E-19 5.9E-24 149.8 20.1 228 94-362 17-244 (275)
55 2q7f_A YRRB protein; TPR, prot 99.8 2.5E-19 8.7E-24 145.9 20.4 208 92-346 33-240 (243)
56 3u4t_A TPR repeat-containing p 99.8 3.6E-20 1.2E-24 153.7 15.2 206 124-366 4-212 (272)
57 3uq3_A Heat shock protein STI1 99.8 1.5E-18 5.3E-23 142.5 24.4 223 92-342 15-256 (258)
58 2xpi_A Anaphase-promoting comp 99.8 4.6E-19 1.6E-23 163.8 23.7 226 93-366 283-508 (597)
59 4i17_A Hypothetical protein; T 99.8 5.4E-19 1.9E-23 142.6 21.0 183 124-343 8-224 (228)
60 1ouv_A Conserved hypothetical 99.8 1.9E-18 6.5E-23 143.5 24.4 212 93-363 17-252 (273)
61 2gw1_A Mitochondrial precursor 99.8 4.9E-20 1.7E-24 167.1 15.7 230 92-363 247-479 (514)
62 3n71_A Histone lysine methyltr 99.8 5.3E-19 1.8E-23 156.6 21.4 155 126-280 312-466 (490)
63 2gw1_A Mitochondrial precursor 99.8 9.1E-20 3.1E-24 165.3 16.7 233 95-362 202-444 (514)
64 3mkr_A Coatomer subunit epsilo 99.8 6.9E-19 2.4E-23 147.0 20.4 227 92-374 44-271 (291)
65 3gw4_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 134.7 22.5 194 93-300 3-196 (203)
66 3n71_A Histone lysine methyltr 99.8 2.1E-18 7.1E-23 152.8 22.4 153 169-321 313-465 (490)
67 4g1t_A Interferon-induced prot 99.8 1.9E-18 6.5E-23 155.1 21.7 239 92-362 61-329 (472)
68 3gw4_A Uncharacterized protein 99.8 7.2E-18 2.5E-22 133.3 22.2 194 134-342 3-196 (203)
69 3qky_A Outer membrane assembly 99.8 3.9E-18 1.3E-22 140.6 20.5 183 161-363 11-225 (261)
70 1ouv_A Conserved hypothetical 99.8 1.6E-17 5.4E-22 137.9 23.9 192 121-362 4-215 (273)
71 2qfc_A PLCR protein; TPR, HTH, 99.8 4.3E-18 1.5E-22 142.8 20.5 198 119-324 71-270 (293)
72 4abn_A Tetratricopeptide repea 99.8 2E-18 6.9E-23 154.4 18.0 191 142-363 80-288 (474)
73 3u3w_A Transcriptional activat 99.8 7.6E-18 2.6E-22 141.3 20.3 195 122-326 74-272 (293)
74 2qfc_A PLCR protein; TPR, HTH, 99.8 1.4E-17 4.9E-22 139.6 21.9 198 162-367 72-271 (293)
75 4i17_A Hypothetical protein; T 99.8 7.1E-18 2.4E-22 136.1 19.3 173 165-362 7-209 (228)
76 2ho1_A Type 4 fimbrial biogene 99.8 2.7E-17 9.3E-22 134.7 22.0 191 94-321 49-239 (252)
77 3u3w_A Transcriptional activat 99.8 1E-16 3.5E-21 134.4 25.4 196 162-367 72-271 (293)
78 2vq2_A PILW, putative fimbrial 99.8 3.6E-17 1.2E-21 131.3 20.7 174 161-364 4-178 (225)
79 3as5_A MAMA; tetratricopeptide 99.8 1.3E-17 4.3E-22 129.7 17.3 172 120-323 5-176 (186)
80 2yhc_A BAMD, UPF0169 lipoprote 99.8 6.9E-17 2.3E-21 129.9 22.0 183 165-364 4-215 (225)
81 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.5E-16 5.2E-21 127.9 23.8 178 123-320 4-213 (225)
82 4b4t_Q 26S proteasome regulato 99.8 9.1E-17 3.1E-21 142.5 24.3 240 126-372 7-255 (434)
83 3as5_A MAMA; tetratricopeptide 99.8 2.4E-17 8.1E-22 128.1 17.6 173 161-365 4-176 (186)
84 3ro3_A PINS homolog, G-protein 99.8 2E-16 6.9E-21 120.0 21.4 159 160-324 4-162 (164)
85 3ro3_A PINS homolog, G-protein 99.8 1.8E-16 6.1E-21 120.3 21.0 159 118-282 4-162 (164)
86 2pzi_A Probable serine/threoni 99.8 3.9E-18 1.3E-22 159.2 13.8 200 134-366 402-602 (681)
87 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4.2E-21 133.4 21.4 221 92-362 9-229 (291)
88 3urz_A Uncharacterized protein 99.8 2.9E-16 9.9E-21 124.5 21.0 166 123-321 4-187 (208)
89 4ga2_A E3 SUMO-protein ligase 99.7 4.2E-18 1.4E-22 127.5 9.5 147 128-306 2-149 (150)
90 4ga2_A E3 SUMO-protein ligase 99.7 9.5E-18 3.3E-22 125.6 10.6 147 170-348 2-149 (150)
91 4b4t_Q 26S proteasome regulato 99.7 1.1E-15 3.7E-20 135.5 25.8 234 90-330 12-255 (434)
92 2ond_A Cleavage stimulation fa 99.7 1.5E-16 5.2E-21 134.3 18.4 223 100-365 34-273 (308)
93 3urz_A Uncharacterized protein 99.7 2.7E-16 9.2E-21 124.7 16.5 167 165-364 4-188 (208)
94 3qww_A SET and MYND domain-con 99.7 4.1E-16 1.4E-20 136.0 19.0 123 134-256 309-431 (433)
95 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.4E-17 2.5E-21 133.8 13.5 216 93-356 54-269 (275)
96 2pzi_A Probable serine/threoni 99.7 8E-17 2.7E-21 150.3 15.2 201 91-324 400-602 (681)
97 3qwp_A SET and MYND domain-con 99.7 6.9E-16 2.4E-20 134.9 17.4 135 128-262 292-426 (429)
98 4gco_A Protein STI-1; structur 99.7 6.2E-16 2.1E-20 111.8 14.2 118 118-259 8-125 (126)
99 3qww_A SET and MYND domain-con 99.7 1.3E-15 4.4E-20 132.8 18.5 123 218-340 309-431 (433)
100 2ond_A Cleavage stimulation fa 99.7 3.5E-15 1.2E-19 125.9 18.5 183 140-362 33-232 (308)
101 3qwp_A SET and MYND domain-con 99.7 2.5E-15 8.6E-20 131.3 17.5 133 172-304 294-426 (429)
102 3qou_A Protein YBBN; thioredox 99.7 2E-15 6.9E-20 125.9 16.2 170 121-320 115-284 (287)
103 2xm6_A Protein corresponding t 99.7 5.7E-14 2E-18 126.5 25.2 158 166-363 256-433 (490)
104 2r5s_A Uncharacterized protein 99.7 6.5E-16 2.2E-20 119.1 10.7 166 124-320 7-173 (176)
105 4gco_A Protein STI-1; structur 99.6 3.6E-15 1.2E-19 107.8 13.7 102 161-278 9-110 (126)
106 2xm6_A Protein corresponding t 99.6 6.8E-14 2.3E-18 126.0 24.5 144 95-277 56-215 (490)
107 3qou_A Protein YBBN; thioredox 99.6 1.2E-14 4.1E-19 121.2 17.7 169 162-362 114-284 (287)
108 3rjv_A Putative SEL1 repeat pr 99.6 1.4E-14 4.9E-19 115.0 17.2 176 141-362 4-197 (212)
109 4gcn_A Protein STI-1; structur 99.6 2.9E-14 1E-18 103.2 16.8 110 119-237 4-113 (127)
110 4f3v_A ESX-1 secretion system 99.6 7.6E-15 2.6E-19 119.0 14.5 211 122-363 6-238 (282)
111 2r5s_A Uncharacterized protein 99.6 2.5E-15 8.4E-20 115.8 10.6 167 165-362 6-173 (176)
112 2vsy_A XCC0866; transferase, g 99.6 7.7E-15 2.6E-19 134.7 15.2 154 136-321 2-158 (568)
113 3gyz_A Chaperone protein IPGC; 99.6 4.8E-14 1.6E-18 104.9 16.1 106 116-237 29-134 (151)
114 3gyz_A Chaperone protein IPGC; 99.6 4.1E-15 1.4E-19 110.7 10.2 102 161-278 32-133 (151)
115 2vsy_A XCC0866; transferase, g 99.6 1.2E-14 4.3E-19 133.3 14.3 156 178-365 2-160 (568)
116 1p5q_A FKBP52, FK506-binding p 99.6 2.1E-14 7.3E-19 122.4 14.0 148 117-280 141-296 (336)
117 4gcn_A Protein STI-1; structur 99.6 1.7E-13 5.9E-18 99.1 16.8 108 204-320 5-112 (127)
118 1p5q_A FKBP52, FK506-binding p 99.6 6E-15 2.1E-19 125.8 10.0 164 135-322 125-296 (336)
119 2fo7_A Synthetic consensus TPR 99.6 1.7E-13 5.8E-18 100.1 16.6 131 124-278 2-132 (136)
120 3rjv_A Putative SEL1 repeat pr 99.6 1.2E-13 4.2E-18 109.6 16.7 163 122-320 17-197 (212)
121 1a17_A Serine/threonine protei 99.6 2.2E-13 7.5E-18 103.6 17.1 143 119-283 9-151 (166)
122 2ooe_A Cleavage stimulation fa 99.6 2.6E-13 8.9E-18 123.4 19.0 213 119-367 268-497 (530)
123 3upv_A Heat shock protein STI1 99.5 5.5E-13 1.9E-17 96.4 17.0 122 121-260 2-123 (126)
124 2vgx_A Chaperone SYCD; alterna 99.5 6.8E-14 2.3E-18 104.2 11.7 115 143-281 7-121 (148)
125 2fo7_A Synthetic consensus TPR 99.5 6.1E-13 2.1E-17 97.0 15.5 131 166-320 2-132 (136)
126 3upv_A Heat shock protein STI1 99.5 6.2E-13 2.1E-17 96.1 15.0 122 163-302 2-123 (126)
127 1a17_A Serine/threonine protei 99.5 1.2E-12 4.1E-17 99.4 16.6 140 163-324 11-150 (166)
128 2vyi_A SGTA protein; chaperone 99.5 1.1E-12 3.9E-17 95.1 15.7 125 118-266 7-131 (131)
129 2vgx_A Chaperone SYCD; alterna 99.5 1.8E-12 6.1E-17 96.4 16.6 104 118-237 16-119 (148)
130 2lni_A Stress-induced-phosphop 99.5 6.1E-13 2.1E-17 97.0 13.3 125 116-264 9-133 (133)
131 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.4E-13 1.5E-17 106.5 13.3 137 123-278 6-150 (213)
132 3dra_A Protein farnesyltransfe 99.5 1.6E-12 5.6E-17 107.8 16.8 224 94-361 44-286 (306)
133 2c2l_A CHIP, carboxy terminus 99.5 4.3E-14 1.5E-18 117.4 7.2 195 122-361 3-198 (281)
134 3sz7_A HSC70 cochaperone (SGT) 99.5 1.1E-12 3.9E-17 99.5 14.4 104 118-237 6-109 (164)
135 2hr2_A Hypothetical protein; a 99.5 2.9E-12 1E-16 94.1 14.9 117 122-239 10-134 (159)
136 3e4b_A ALGK; tetratricopeptide 99.5 2.7E-12 9.3E-17 114.0 17.7 186 125-361 178-386 (452)
137 1wao_1 Serine/threonine protei 99.5 2.5E-14 8.5E-19 127.7 4.6 180 121-324 4-201 (477)
138 2hr2_A Hypothetical protein; a 99.5 3.5E-12 1.2E-16 93.7 15.1 120 164-284 10-137 (159)
139 2xcb_A PCRH, regulatory protei 99.5 1.7E-12 5.7E-17 96.0 13.6 104 118-237 13-116 (142)
140 2fbn_A 70 kDa peptidylprolyl i 99.5 1.7E-13 5.9E-18 107.6 8.7 169 169-361 8-185 (198)
141 3rkv_A Putative peptidylprolyl 99.5 1.9E-12 6.6E-17 98.0 13.8 129 119-263 7-146 (162)
142 2ooe_A Cleavage stimulation fa 99.4 1.9E-12 6.5E-17 117.8 16.2 184 140-362 255-454 (530)
143 2fbn_A 70 kDa peptidylprolyl i 99.4 9.3E-13 3.2E-17 103.4 12.3 134 118-269 33-176 (198)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.1E-12 3.7E-17 104.2 12.4 140 163-321 4-151 (213)
145 3e4b_A ALGK; tetratricopeptide 99.4 4.6E-12 1.6E-16 112.5 17.5 191 123-361 141-350 (452)
146 2xcb_A PCRH, regulatory protei 99.4 2E-12 7E-17 95.5 12.7 105 161-281 14-118 (142)
147 2vyi_A SGTA protein; chaperone 99.4 4.4E-12 1.5E-16 91.9 14.2 125 160-308 7-131 (131)
148 2lni_A Stress-induced-phosphop 99.4 2.1E-12 7.2E-17 94.1 12.3 124 159-306 10-133 (133)
149 1wao_1 Serine/threonine protei 99.4 6.7E-14 2.3E-18 124.9 4.8 181 162-366 3-201 (477)
150 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 2.3E-13 7.7E-18 121.0 8.2 160 135-318 246-413 (457)
151 3q49_B STIP1 homology and U bo 99.4 4.7E-12 1.6E-16 92.8 13.7 104 120-239 6-109 (137)
152 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 7.5E-13 2.6E-17 117.7 10.7 144 117-276 262-413 (457)
153 2e2e_A Formate-dependent nitri 99.4 1.9E-12 6.5E-17 99.6 11.7 122 134-279 21-145 (177)
154 1na0_A Designed protein CTPR3; 99.4 1.1E-11 3.7E-16 89.0 14.9 118 122-263 8-125 (125)
155 3rkv_A Putative peptidylprolyl 99.4 1.1E-11 3.7E-16 93.9 14.9 109 162-278 8-126 (162)
156 1elr_A TPR2A-domain of HOP; HO 99.4 1.8E-11 6.1E-16 88.7 15.4 123 121-261 2-124 (131)
157 4f3v_A ESX-1 secretion system 99.4 5E-13 1.7E-17 108.4 7.0 197 95-320 19-237 (282)
158 3sz7_A HSC70 cochaperone (SGT) 99.4 6.6E-12 2.3E-16 95.3 12.7 106 160-281 6-111 (164)
159 2e2e_A Formate-dependent nitri 99.4 8.8E-12 3E-16 95.8 13.5 123 175-321 20-145 (177)
160 1xi4_A Clathrin heavy chain; a 99.4 1.7E-11 5.7E-16 117.7 17.6 190 121-362 1103-1309(1630)
161 2xev_A YBGF; tetratricopeptide 99.4 6E-11 2E-15 85.8 16.8 102 167-278 4-105 (129)
162 2xev_A YBGF; tetratricopeptide 99.4 3E-11 1E-15 87.5 14.8 103 125-237 4-106 (129)
163 3q49_B STIP1 homology and U bo 99.4 3.5E-11 1.2E-15 88.1 14.8 106 161-282 5-110 (137)
164 1xi4_A Clathrin heavy chain; a 99.4 1.8E-10 6.2E-15 110.7 23.1 219 91-362 994-1250(1630)
165 1ihg_A Cyclophilin 40; ppiase 99.3 1.4E-11 4.9E-16 106.1 14.0 136 119-270 219-362 (370)
166 1elw_A TPR1-domain of HOP; HOP 99.3 2.9E-11 9.9E-16 85.8 13.5 114 122-259 3-116 (118)
167 1na0_A Designed protein CTPR3; 99.3 3.5E-11 1.2E-15 86.2 14.0 118 164-305 8-125 (125)
168 1hxi_A PEX5, peroxisome target 99.3 1.2E-11 4.2E-16 88.4 11.1 97 125-237 19-115 (121)
169 1elr_A TPR2A-domain of HOP; HO 99.3 8.6E-11 2.9E-15 85.0 14.2 107 163-278 2-108 (131)
170 3mv2_B Coatomer subunit epsilo 99.3 1.7E-10 5.8E-15 94.8 17.0 180 165-374 100-289 (310)
171 1ihg_A Cyclophilin 40; ppiase 99.3 5.8E-11 2E-15 102.3 15.0 133 164-312 222-362 (370)
172 1hxi_A PEX5, peroxisome target 99.3 1.7E-11 5.9E-16 87.6 9.8 99 166-280 18-116 (121)
173 2dba_A Smooth muscle cell asso 99.3 4.2E-11 1.4E-15 88.9 12.2 121 118-259 23-143 (148)
174 2if4_A ATFKBP42; FKBP-like, al 99.3 6.4E-12 2.2E-16 107.1 8.6 140 118-281 174-331 (338)
175 3dra_A Protein farnesyltransfe 99.3 7.7E-10 2.6E-14 91.8 19.9 185 134-358 43-246 (306)
176 2dba_A Smooth muscle cell asso 99.2 7E-11 2.4E-15 87.6 11.3 105 161-278 24-128 (148)
177 1elw_A TPR1-domain of HOP; HOP 99.2 2.1E-10 7.3E-15 81.2 13.3 99 164-278 3-101 (118)
178 1b89_A Protein (clathrin heavy 99.2 5E-12 1.7E-16 108.6 5.3 173 125-361 63-235 (449)
179 3k9i_A BH0479 protein; putativ 99.2 5.3E-11 1.8E-15 84.6 9.6 90 135-237 2-91 (117)
180 3dss_A Geranylgeranyl transfer 99.2 1.1E-09 3.6E-14 91.5 18.7 223 95-364 42-306 (331)
181 2c2l_A CHIP, carboxy terminus 99.2 1.6E-11 5.3E-16 101.9 7.3 104 164-283 3-106 (281)
182 2if4_A ATFKBP42; FKBP-like, al 99.2 2.6E-11 8.9E-16 103.3 8.1 145 205-365 177-331 (338)
183 3dss_A Geranylgeranyl transfer 99.2 2E-09 6.9E-14 89.9 18.8 192 133-364 39-269 (331)
184 3mv2_B Coatomer subunit epsilo 99.2 1E-09 3.4E-14 90.3 16.7 180 124-332 101-289 (310)
185 2kck_A TPR repeat; tetratricop 99.2 4.2E-11 1.4E-15 84.1 7.0 100 123-236 6-106 (112)
186 3k9i_A BH0479 protein; putativ 99.2 8.5E-11 2.9E-15 83.5 8.1 90 177-279 2-91 (117)
187 1b89_A Protein (clathrin heavy 99.2 2.1E-11 7.1E-16 104.7 5.0 165 124-353 33-197 (449)
188 2kck_A TPR repeat; tetratricop 99.1 5.7E-11 1.9E-15 83.4 6.2 100 163-278 4-106 (112)
189 3q7a_A Farnesyltransferase alp 99.1 2.5E-09 8.6E-14 89.7 16.8 224 99-361 71-330 (349)
190 1dce_A Protein (RAB geranylger 99.1 1.3E-09 4.4E-14 99.0 15.0 179 133-351 38-244 (567)
191 3q7a_A Farnesyltransferase alp 99.1 5.4E-09 1.8E-13 87.7 16.7 189 121-349 52-258 (349)
192 1zu2_A Mitochondrial import re 99.1 5.3E-10 1.8E-14 81.9 8.8 88 134-237 13-121 (158)
193 1na3_A Designed protein CTPR2; 99.0 4.3E-09 1.5E-13 70.6 11.1 87 119-221 5-91 (91)
194 2l6j_A TPR repeat-containing p 99.0 2.8E-10 9.4E-15 79.8 4.1 97 122-231 3-102 (111)
195 1na3_A Designed protein CTPR2; 99.0 6.5E-09 2.2E-13 69.7 10.5 87 161-263 5-91 (91)
196 4e6h_A MRNA 3'-END-processing 99.0 6.8E-08 2.3E-12 89.1 20.1 217 120-364 340-572 (679)
197 2l6j_A TPR repeat-containing p 99.0 4.2E-10 1.4E-14 78.9 4.4 101 164-274 3-103 (111)
198 1zu2_A Mitochondrial import re 99.0 3E-09 1E-13 77.9 8.7 87 176-278 13-120 (158)
199 1dce_A Protein (RAB geranylger 98.9 4.8E-09 1.6E-13 95.3 10.9 175 96-309 42-244 (567)
200 2kat_A Uncharacterized protein 98.9 1.2E-08 4E-13 72.0 10.5 82 141-238 3-84 (115)
201 3ma5_A Tetratricopeptide repea 98.9 2.7E-08 9.2E-13 68.1 11.1 72 119-198 3-74 (100)
202 2kat_A Uncharacterized protein 98.9 1.7E-08 5.9E-13 71.1 10.4 86 182-283 2-87 (115)
203 4e6h_A MRNA 3'-END-processing 98.9 2.8E-07 9.7E-12 85.1 19.9 192 140-362 326-533 (679)
204 3ma5_A Tetratricopeptide repea 98.8 2.5E-08 8.4E-13 68.3 9.8 71 161-239 3-73 (100)
205 1klx_A Cysteine rich protein B 98.8 3.7E-08 1.3E-12 71.9 11.3 110 137-278 9-126 (138)
206 1klx_A Cysteine rich protein B 98.8 5.6E-08 1.9E-12 70.9 10.8 110 179-320 9-126 (138)
207 2kc7_A BFR218_protein; tetratr 98.6 1.2E-07 4.1E-12 64.6 8.1 87 127-237 4-91 (99)
208 2kc7_A BFR218_protein; tetratr 98.6 1E-07 3.4E-12 65.0 7.1 89 169-281 4-93 (99)
209 3txn_A 26S proteasome regulato 98.5 0.00015 5E-09 61.9 24.3 190 124-323 20-213 (394)
210 3ly7_A Transcriptional activat 98.5 7.1E-06 2.4E-10 68.8 15.9 134 126-278 199-339 (372)
211 2v5f_A Prolyl 4-hydroxylase su 98.5 7.2E-06 2.5E-10 56.2 13.3 83 123-214 5-87 (104)
212 2v5f_A Prolyl 4-hydroxylase su 98.5 2.8E-06 9.6E-11 58.3 11.1 83 165-256 5-87 (104)
213 4g26_A Pentatricopeptide repea 98.5 7E-06 2.4E-10 73.4 16.6 167 126-320 29-204 (501)
214 3txn_A 26S proteasome regulato 98.5 8.8E-05 3E-09 63.3 22.3 190 165-365 19-213 (394)
215 4g26_A Pentatricopeptide repea 98.4 1.2E-05 4.1E-10 71.9 17.2 167 167-361 28-203 (501)
216 3bee_A Putative YFRE protein; 98.4 4.2E-06 1.4E-10 55.8 9.7 67 120-194 3-72 (93)
217 3ly7_A Transcriptional activat 98.3 4E-05 1.4E-09 64.4 15.3 133 169-320 200-339 (372)
218 3u64_A Protein TP_0956; tetrat 98.2 0.00011 3.9E-09 59.1 15.3 107 161-281 148-272 (301)
219 3ffl_A Anaphase-promoting comp 98.2 8.5E-05 2.9E-09 54.1 13.2 126 125-259 22-165 (167)
220 3ffl_A Anaphase-promoting comp 98.1 0.00017 5.8E-09 52.5 14.3 110 249-358 20-147 (167)
221 3bee_A Putative YFRE protein; 98.1 4.1E-05 1.4E-09 51.0 9.3 68 162-237 3-73 (93)
222 3u64_A Protein TP_0956; tetrat 98.0 0.0006 2E-08 55.0 17.0 86 223-321 179-270 (301)
223 1pc2_A Mitochondria fission pr 98.0 0.00034 1.2E-08 50.6 13.8 84 139-237 14-101 (152)
224 1pc2_A Mitochondria fission pr 98.0 0.00018 6.2E-09 52.0 12.2 67 121-194 30-100 (152)
225 2uy1_A Cleavage stimulation fa 97.9 0.0014 4.9E-08 58.5 19.7 188 140-365 196-416 (493)
226 4b4t_P 26S proteasome regulato 97.8 0.0028 9.6E-08 55.6 19.7 219 95-324 29-251 (445)
227 4b4t_P 26S proteasome regulato 97.8 0.0056 1.9E-07 53.7 20.7 217 136-365 29-250 (445)
228 4h7y_A Dual specificity protei 97.6 0.00064 2.2E-08 48.4 9.3 108 247-363 11-124 (161)
229 2uy1_A Cleavage stimulation fa 97.4 0.013 4.4E-07 52.3 17.4 173 121-323 211-416 (493)
230 4h7y_A Dual specificity protei 97.1 0.014 4.9E-07 41.7 11.7 105 124-237 14-124 (161)
231 4b4t_R RPN7, 26S proteasome re 96.9 0.0067 2.3E-07 53.0 10.4 108 206-320 130-237 (429)
232 1nzn_A CGI-135 protein, fissio 96.9 0.056 1.9E-06 37.6 12.7 85 138-237 16-104 (126)
233 4b4t_R RPN7, 26S proteasome re 96.9 0.012 4E-07 51.5 11.7 109 122-237 130-238 (429)
234 1nzn_A CGI-135 protein, fissio 96.8 0.024 8.1E-07 39.5 10.5 67 247-320 33-103 (126)
235 4b4t_S RPN3, 26S proteasome re 96.1 0.053 1.8E-06 47.7 11.1 176 130-309 143-329 (523)
236 4gns_B Protein CSD3, chitin bi 95.9 0.15 5.3E-06 47.4 13.7 123 136-275 261-397 (754)
237 3mkq_A Coatomer beta'-subunit; 95.9 0.12 4E-06 49.3 13.5 49 174-235 661-709 (814)
238 3spa_A Mtrpol, DNA-directed RN 95.9 0.2 6.7E-06 48.2 14.1 105 121-236 125-230 (1134)
239 3spa_A Mtrpol, DNA-directed RN 95.9 0.13 4.5E-06 49.3 12.9 106 162-278 124-230 (1134)
240 4gns_B Protein CSD3, chitin bi 95.6 0.35 1.2E-05 45.1 14.4 123 178-317 261-397 (754)
241 2ff4_A Probable regulatory pro 95.3 0.49 1.7E-05 40.6 13.9 110 125-242 117-240 (388)
242 2ff4_A Probable regulatory pro 95.3 0.28 9.6E-06 42.1 12.2 69 292-368 172-240 (388)
243 1ya0_A SMG-7 transcript varian 95.2 0.12 4.3E-06 45.7 9.9 63 165-235 152-214 (497)
244 3o48_A Mitochondria fission 1 95.1 0.53 1.8E-05 32.9 11.4 65 122-194 39-107 (134)
245 3o48_A Mitochondria fission 1 95.0 0.4 1.4E-05 33.5 9.9 66 248-320 39-107 (134)
246 3mkq_B Coatomer subunit alpha; 95.0 0.57 2E-05 34.7 11.5 102 174-317 14-115 (177)
247 3mkq_B Coatomer subunit alpha; 94.9 0.6 2.1E-05 34.6 11.4 49 216-277 14-62 (177)
248 1y8m_A FIS1; mitochondria, unk 94.8 0.71 2.4E-05 32.7 12.5 67 121-194 37-106 (144)
249 3kae_A CDC27, possible protein 94.7 0.88 3E-05 33.3 11.7 98 210-320 36-143 (242)
250 4b4t_S RPN3, 26S proteasome re 94.6 0.11 3.7E-06 45.8 7.9 145 174-321 145-300 (523)
251 3mkq_A Coatomer beta'-subunit; 94.5 0.19 6.4E-06 47.9 10.0 75 169-275 633-707 (814)
252 1ya0_A SMG-7 transcript varian 94.1 0.2 6.8E-06 44.4 8.6 63 124-194 153-215 (497)
253 4b4t_O 26S proteasome regulato 93.8 2.5 8.6E-05 36.2 14.6 131 227-362 59-198 (393)
254 2br9_A 14-3-3E, 14-3-3 protein 93.1 2.5 8.4E-05 33.0 14.8 58 308-365 147-205 (234)
255 1y8m_A FIS1; mitochondria, unk 93.1 1.6 5.6E-05 30.9 13.4 67 247-320 37-106 (144)
256 3ubw_A 14-3-3E, 14-3-3 protein 93.1 2.7 9.2E-05 33.2 14.8 57 307-363 172-229 (261)
257 1o9d_A 14-3-3-like protein C; 92.8 3 0.0001 33.1 14.6 184 166-362 9-207 (260)
258 4fhn_B Nucleoporin NUP120; pro 92.6 9.1 0.00031 38.2 19.2 103 167-273 844-962 (1139)
259 4b4t_O 26S proteasome regulato 92.5 4.7 0.00016 34.5 17.9 133 184-321 58-199 (393)
260 3lpz_A GET4 (YOR164C homolog); 91.9 4.8 0.00016 33.4 25.7 245 92-347 22-296 (336)
261 2npm_A 14-3-3 domain containin 90.7 5.3 0.00018 31.7 15.4 56 308-364 173-229 (260)
262 3uzd_A 14-3-3 protein gamma; s 90.4 5.4 0.00018 31.4 19.3 57 307-363 147-204 (248)
263 4fhn_B Nucleoporin NUP120; pro 90.4 10 0.00034 37.8 16.1 103 126-232 845-963 (1139)
264 2wpv_A GET4, UPF0363 protein Y 90.3 6.7 0.00023 32.2 22.7 181 134-321 24-218 (312)
265 2o8p_A 14-3-3 domain containin 89.2 6.4 0.00022 30.4 17.4 152 128-279 11-198 (227)
266 1o9d_A 14-3-3-like protein C; 88.6 7.8 0.00027 30.7 14.0 184 125-321 10-208 (260)
267 3lpz_A GET4 (YOR164C homolog); 88.2 10 0.00035 31.5 26.5 182 134-321 23-217 (336)
268 1zbp_A Hypothetical protein VP 86.3 11 0.00039 30.0 12.4 126 132-282 6-133 (273)
269 1zbp_A Hypothetical protein VP 86.2 9.1 0.00031 30.5 10.2 128 216-368 6-135 (273)
270 4ady_A RPN2, 26S proteasome re 86.2 18 0.00063 34.8 13.9 196 136-359 387-586 (963)
271 3re2_A Predicted protein; meni 86.1 11 0.00039 31.2 10.8 71 291-364 255-327 (472)
272 2wpv_A GET4, UPF0363 protein Y 86.0 13 0.00045 30.5 22.8 152 207-363 53-218 (312)
273 4ady_A RPN2, 26S proteasome re 85.8 26 0.0009 33.8 17.4 175 118-315 408-584 (963)
274 2crb_A Nuclear receptor bindin 83.4 5.9 0.0002 25.4 6.3 39 118-156 10-48 (97)
275 3efz_A 14-3-3 protein; 14-3-3, 82.1 5.2 0.00018 31.8 7.2 74 121-194 140-226 (268)
276 3u84_A Menin; MLL, JUND, ledgf 82.0 20 0.00067 30.5 10.7 69 292-364 278-349 (550)
277 3iqu_A 14-3-3 protein sigma; s 81.5 17 0.00058 28.3 20.7 182 167-363 10-206 (236)
278 2vkj_A TM1634; membrane protei 80.6 8.6 0.00029 24.3 7.4 49 121-175 51-100 (106)
279 4gq4_A Menin; tumor suppressor 80.5 23 0.00079 30.2 10.7 70 292-364 263-334 (489)
280 1qsa_A Protein (soluble lytic 79.1 22 0.00074 32.6 11.3 128 171-319 220-347 (618)
281 3esl_A Checkpoint serine/threo 78.8 19 0.00065 27.3 9.1 70 118-194 75-144 (202)
282 3efz_A 14-3-3 protein; 14-3-3, 78.5 23 0.0008 28.1 11.6 95 184-278 117-226 (268)
283 2crb_A Nuclear receptor bindin 77.4 8.2 0.00028 24.7 5.6 35 164-198 14-48 (97)
284 3kae_A CDC27, possible protein 76.2 21 0.00071 26.3 19.1 97 127-236 37-143 (242)
285 3re2_A Predicted protein; meni 74.6 36 0.0012 28.4 14.0 74 163-239 253-328 (472)
286 3t5v_B Nuclear mRNA export pro 74.1 23 0.00078 31.0 9.6 102 222-323 141-253 (455)
287 2wvi_A Mitotic checkpoint seri 73.6 24 0.00081 25.8 8.2 81 269-361 43-124 (164)
288 2npm_A 14-3-3 domain containin 73.2 33 0.0011 27.2 17.4 187 124-323 29-230 (260)
289 2rpa_A Katanin P60 ATPase-cont 72.6 5.7 0.0002 24.7 4.0 31 126-156 15-45 (78)
290 2o8p_A 14-3-3 domain containin 70.5 35 0.0012 26.4 22.2 181 170-363 11-198 (227)
291 3t5v_B Nuclear mRNA export pro 70.5 19 0.00064 31.5 8.2 74 292-365 177-253 (455)
292 3esl_A Checkpoint serine/threo 67.6 38 0.0013 25.7 14.7 87 144-237 58-145 (202)
293 3u84_A Menin; MLL, JUND, ledgf 67.4 59 0.002 27.8 13.9 74 163-239 275-350 (550)
294 2wvi_A Mitotic checkpoint seri 67.1 21 0.0007 26.1 6.6 83 143-237 43-126 (164)
295 2rpa_A Katanin P60 ATPase-cont 67.0 10 0.00035 23.6 4.3 31 294-324 15-45 (78)
296 2w2u_A Hypothetical P60 katani 66.2 17 0.00058 22.9 5.3 30 210-239 22-51 (83)
297 2w2u_A Hypothetical P60 katani 65.6 19 0.00065 22.7 5.5 29 253-281 23-51 (83)
298 2xze_A STAM-binding protein; h 65.1 12 0.00042 26.6 5.1 41 333-374 40-80 (146)
299 2r17_C Vacuolar protein sortin 64.3 57 0.0019 26.5 19.8 157 164-325 98-272 (298)
300 4gq4_A Menin; tumor suppressor 62.2 75 0.0026 27.2 13.5 74 163-239 260-335 (489)
301 2v6y_A AAA family ATPase, P60 62.0 22 0.00076 22.3 5.3 28 212-239 16-43 (83)
302 2v6y_A AAA family ATPase, P60 60.7 26 0.00089 22.0 5.5 28 254-281 16-43 (83)
303 3ubw_A 14-3-3E, 14-3-3 protein 59.7 64 0.0022 25.6 22.9 181 125-321 33-229 (261)
304 2ijq_A Hypothetical protein; s 59.5 48 0.0016 24.1 7.7 70 126-198 35-108 (161)
305 3t5x_A PCI domain-containing p 59.4 31 0.0011 26.2 6.7 62 119-183 10-71 (203)
306 2ijq_A Hypothetical protein; s 59.0 31 0.0011 25.0 6.3 72 169-240 36-108 (161)
307 3t5x_A PCI domain-containing p 57.7 37 0.0013 25.8 6.9 60 162-224 11-70 (203)
308 2a9u_A Ubiquitin carboxyl-term 57.5 24 0.00081 25.1 5.3 39 333-373 42-80 (144)
309 2wb7_A PT26-6P; extra chromoso 56.2 1E+02 0.0035 27.0 9.7 41 266-306 449-489 (526)
310 4gq2_M Nucleoporin NUP120; bet 55.7 1.5E+02 0.0053 28.8 13.2 70 250-321 841-927 (950)
311 4gq2_M Nucleoporin NUP120; bet 54.5 86 0.0029 30.5 10.4 70 209-278 842-926 (950)
312 2v6x_A Vacuolar protein sortin 54.4 38 0.0013 21.3 5.5 31 209-239 15-45 (85)
313 4a1g_A Mitotic checkpoint seri 52.4 62 0.0021 23.2 8.3 83 142-236 47-130 (152)
314 3ax2_A Mitochondrial import re 51.9 38 0.0013 20.7 5.1 28 168-195 20-47 (73)
315 1wy6_A Hypothetical protein ST 51.8 61 0.0021 23.0 6.5 53 134-194 102-154 (172)
316 2wb7_A PT26-6P; extra chromoso 50.7 63 0.0021 28.3 7.6 43 139-181 448-490 (526)
317 1om2_A Protein (mitochondrial 50.3 28 0.00095 22.6 4.3 27 169-195 24-50 (95)
318 2v6x_A Vacuolar protein sortin 49.7 46 0.0016 20.9 6.0 34 122-155 12-45 (85)
319 4aez_C MAD3, mitotic spindle c 49.6 68 0.0023 24.7 7.1 65 118-194 115-179 (223)
320 3myv_A SUSD superfamily protei 49.6 30 0.001 30.2 5.9 35 245-279 186-220 (454)
321 2br9_A 14-3-3E, 14-3-3 protein 49.5 91 0.0031 24.3 22.7 58 266-323 147-205 (234)
322 4a5x_A MITD1, MIT domain-conta 49.1 48 0.0016 21.0 8.5 35 122-156 15-49 (86)
323 3ax2_A Mitochondrial import re 48.8 38 0.0013 20.7 4.5 27 126-152 20-46 (73)
324 3myv_A SUSD superfamily protei 48.6 36 0.0012 29.7 6.3 36 329-364 186-221 (454)
325 4a1g_A Mitotic checkpoint seri 47.4 76 0.0026 22.8 8.4 82 268-361 47-129 (152)
326 3uzd_A 14-3-3 protein gamma; s 47.1 1E+02 0.0035 24.2 24.3 182 126-322 7-205 (248)
327 3kez_A Putative sugar binding 46.8 35 0.0012 29.9 5.9 35 203-237 192-226 (461)
328 1wy6_A Hypothetical protein ST 46.5 53 0.0018 23.2 5.4 55 258-320 100-154 (172)
329 4aez_C MAD3, mitotic spindle c 45.9 1E+02 0.0035 23.8 12.0 83 268-362 96-179 (223)
330 3kez_A Putative sugar binding 45.6 41 0.0014 29.4 6.2 36 329-364 192-227 (461)
331 1om2_A Protein (mitochondrial 44.5 62 0.0021 21.0 5.3 28 210-237 23-50 (95)
332 1wfd_A Hypothetical protein 15 42.0 67 0.0023 20.6 9.3 30 295-324 19-48 (93)
333 2a9u_A Ubiquitin carboxyl-term 39.5 1E+02 0.0034 21.9 6.3 43 122-166 41-83 (144)
334 2cpt_A SKD1 protein, vacuolar 39.0 89 0.003 21.2 7.9 30 211-240 22-51 (117)
335 3mcx_A SUSD superfamily protei 38.2 38 0.0013 29.8 4.8 33 246-278 199-231 (477)
336 2cpt_A SKD1 protein, vacuolar 38.0 93 0.0032 21.1 8.2 34 123-156 18-51 (117)
337 4a5x_A MITD1, MIT domain-conta 37.2 78 0.0027 20.0 8.4 34 207-240 16-49 (86)
338 3mcx_A SUSD superfamily protei 36.8 47 0.0016 29.2 5.2 33 330-362 199-231 (477)
339 1zb1_A BRO1 protein; AIP1, BRO 36.4 2E+02 0.0068 24.4 11.6 119 121-239 121-289 (392)
340 2yin_A DOCK2, dedicator of cyt 35.7 2.2E+02 0.0074 24.7 11.2 24 249-272 35-58 (436)
341 3iqu_A 14-3-3 protein sigma; s 35.5 1.6E+02 0.0054 23.0 23.8 182 125-321 10-206 (236)
342 3snx_A SUSD homolog, putative 35.0 72 0.0025 27.9 6.0 33 203-235 187-219 (460)
343 3snx_A SUSD homolog, putative 34.3 71 0.0024 27.9 5.9 32 246-277 188-219 (460)
344 2cwy_A Hypothetical protein TT 32.9 99 0.0034 19.9 7.2 67 255-325 7-73 (94)
345 2wm9_A Dedicator of cytokinesi 31.7 2.5E+02 0.0086 24.2 11.2 28 208-235 12-39 (428)
346 1qsa_A Protein (soluble lytic 31.1 3.1E+02 0.011 25.1 21.0 128 213-361 220-347 (618)
347 2qx5_A Nucleoporin NIC96; mRNA 29.0 3.5E+02 0.012 25.0 10.3 101 124-232 444-563 (661)
348 3dza_A Uncharacterized putativ 28.9 1.8E+02 0.0062 21.7 8.1 109 252-361 38-178 (191)
349 3lew_A SUSD-like carbohydrate 28.2 1.2E+02 0.004 26.8 6.3 33 246-278 200-232 (495)
350 3lew_A SUSD-like carbohydrate 26.3 1.4E+02 0.0049 26.3 6.5 33 330-362 200-232 (495)
351 2dl1_A Spartin; SPG20, MIT, st 25.9 1.6E+02 0.0053 19.9 5.4 21 219-239 34-54 (116)
352 2xze_A STAM-binding protein; h 25.9 1.3E+02 0.0046 21.2 5.1 34 122-155 39-72 (146)
353 2wm9_A Dedicator of cytokinesi 24.8 3.4E+02 0.011 23.4 11.1 96 122-219 10-140 (428)
354 3jq1_A SUSD superfamily protei 24.3 72 0.0025 28.1 4.2 32 246-277 177-208 (481)
355 3hdx_A SUSD homolog, SUSD supe 23.5 1.5E+02 0.0053 25.9 6.2 34 203-236 193-226 (478)
356 2vkj_A TM1634; membrane protei 23.3 1.5E+02 0.0051 18.8 7.3 47 164-216 52-99 (106)
357 3hdx_A SUSD homolog, SUSD supe 22.6 1.5E+02 0.0053 25.9 6.0 33 246-278 194-226 (478)
358 3jq1_A SUSD superfamily protei 22.5 93 0.0032 27.4 4.5 31 331-361 178-208 (481)
359 3qnk_A Putative lipoprotein; a 20.7 1.7E+02 0.0057 26.0 5.9 54 223-276 153-209 (517)
360 3eab_A Spastin; spastin, MIT, 20.0 1.8E+02 0.0062 18.5 4.6 18 263-280 33-50 (89)
No 1
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.5e-27 Score=197.58 Aligned_cols=251 Identities=24% Similarity=0.332 Sum_probs=228.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Q 017109 114 VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIK 193 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 193 (377)
..++++|..+.++..+|.++...|++++|+.++++++++.....+++.+....++..+|.++...|++++|+.++++++.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45668889999999999999999999999999999999988886667889999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHH
Q 017109 194 ILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
..++..+++.+....++..+|.++...|++++|+.++++++++..+..+.+++....++..+|.++...|++++|+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99888777788889999999999999999999999999999999888777788899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc----------------------------
Q 017109 274 ESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK---------------------------- 325 (377)
Q Consensus 274 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------- 325 (377)
+++++.....+++.+....++..+|.++...|++++|+.+++++++......
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 9999998887677888899999999999999999999999999998754421
Q ss_pred -------------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 326 -------------GWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 326 -------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
...++....++..+|.+|...|++++|..++++++++.+
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 114577889999999999999999999999999999764
No 2
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.95 E-value=9.3e-26 Score=188.40 Aligned_cols=229 Identities=24% Similarity=0.304 Sum_probs=211.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|++++|+.+++++++..++..+.+++....++..+|.++...|++++|+.++++++++.++..+++++....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 56799999999999999999998877889999999999999999999999999999999999988778889999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
|.++...|++++|+.++++++.+.++..+++++....++.++|.++...|++++|+.++++++++.....+++.+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999998888888999999999999999999999999999999999888877788889999
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc-----------------------------------------CCCChhH
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSK-----------------------------------------GWNSLDT 332 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------------------------------~~~~~~~ 332 (377)
+..+|.++...|++++|+.++++++++..... +..++..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999999999854422 1256778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
..++..+|.++...|++++|..++++++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999999874
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.95 E-value=5.7e-25 Score=192.13 Aligned_cols=264 Identities=14% Similarity=0.155 Sum_probs=225.9
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC-CHhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER-DPHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l 171 (377)
...|++++|...+.+++......+ +.+..+.++..+|.++...|++++|+.++++++++.++. ++ .+..+.++.++
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVK-DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH--EAYNIRLLQCHSLF 190 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--STTHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 457999999999999998766553 667788999999999999999999999999999998876 33 56788999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.+|...|++++|+.++++++++.++. ++.+..+.++.++|.+|..+|++++|+.++++++++.+..... +....+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~ 266 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL--PSLPQA 266 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc--hhHHHH
Confidence 999999999999999999999998876 3567788899999999999999999999999999998765432 667889
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+.++|.++...|++++|+.++++++++.+..+ .+.....+..+|.++...|++ ..+++++...++. ...+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~ 337 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---DVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK--MLYAD 337 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT--TCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC--cCHHH
Confidence 99999999999999999999999999988875 333334467799999999995 4455555555554 33466
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
...++..+|.+|...|++++|..++++++++.+++.+.++.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~e~l 378 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSL 378 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSCCCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhccchh
Confidence 68889999999999999999999999999999998876653
No 4
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.3e-24 Score=189.54 Aligned_cols=264 Identities=17% Similarity=0.155 Sum_probs=232.0
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++......+ +.+..+.++..+|.++...|++++|+.++++++++.... .+.+....++..+
T Consensus 57 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 133 (406)
T 3sf4_A 57 YFYLHDYAKALEYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNL 133 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHH
Confidence 3456888999998888887665543 567788999999999999999999999999999998877 4556678899999
Q ss_pred HHHHHHhcC--------------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 017109 172 AELYRVKKA--------------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 172 a~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
|.++...|+ +++|+.++++++.+..+. .+.+....++..+|.++...|++++|+.+++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999 999999999999998876 3567778899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 232 RALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
+++++..... +.+....++.++|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|+
T Consensus 212 ~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 212 QRLLIAKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9999987643 2356677999999999999999999999999999988865 56667888999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.++++++++...... .+....++..+|.++...|++++|..++++++++.++.
T Consensus 288 ~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 288 DYHLKHLAIAQELND--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999877633 35568899999999999999999999999999998775
No 5
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=3e-24 Score=189.39 Aligned_cols=262 Identities=21% Similarity=0.219 Sum_probs=229.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... .+....+.++..+|.++...|++++|+.++++++++.+.. .+.+....++..+
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 132 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGT---EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNL 132 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcc---cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHH
Confidence 3457899999999999887632 2344456899999999999999999999999999998887 5668889999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK-----------------LEDACTYYERAL 234 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al 234 (377)
|.++...|++++|+.++++++++..... +.+....++..+|.++...|+ +++|+.++++++
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988763 467778899999999999999 999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 235 KIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
++...... .+....++..+|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|+.++
T Consensus 211 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 211 KLMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 98877633 367788999999999999999999999999999988865 55667778999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++++.+..... +......++..+|.++...|++++|..++++++++.++.
T Consensus 287 ~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 287 KRTLALAVELG--EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 99999987652 234557889999999999999999999999999988775
No 6
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.6e-24 Score=191.14 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=232.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++......+ +.+....++..+|.++...|++++|+.++++++++.... .+.+....++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 172 (411)
T 4a1s_A 96 YFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNL 172 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHH
Confidence 3457999999999999887765553 567889999999999999999999999999999998887 5567889999999
Q ss_pred HHHHHHhcC-----------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017109 172 AELYRVKKA-----------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERAL 234 (377)
Q Consensus 172 a~~~~~~g~-----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 234 (377)
|.++...|+ +++|+.++++++++..... +.+....++..+|.++...|++++|+.++++++
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999 9999999999999888762 457778899999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 235 KIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
++...... ......++..+|.++...|++++|+.++++++.+.+... +......++..+|.++...|++++|+.++
T Consensus 251 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 251 RIAREFGD--RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG--EREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHTC--HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCC--cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99876532 255677899999999999999999999999999988864 55667788999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++++.+..... +.+....++..+|.++...|++++|..++++++++.+++
T Consensus 327 ~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 327 NRHLAIAQELG--DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHCC--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 99999987763 235567899999999999999999999999999986553
No 7
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.5e-24 Score=187.16 Aligned_cols=262 Identities=20% Similarity=0.213 Sum_probs=230.3
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... .+....+.++..+|.++...|++++|+.++++++.+.... .+.+....++..+
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 93 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNL 93 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHH
Confidence 4457899999999999887632 2444467899999999999999999999999999998877 5567889999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC--------------------HHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK--------------------LEDACTYYE 231 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 231 (377)
|.++...|++++|+.++++++++.++.. +.+....++..+|.++...|+ +++|+.+++
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999988763 456678899999999999999 999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 232 RALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
+++.+..... +.+....++.++|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|+
T Consensus 172 ~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 172 ENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999987653 3377788999999999999999999999999999988865 56677788999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.++++++.+..... +.+....++..+|.++...|++++|..++++++++.++.
T Consensus 248 ~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 248 EYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 99999999987653 334557899999999999999999999999999988775
No 8
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=2e-24 Score=184.83 Aligned_cols=263 Identities=17% Similarity=0.159 Sum_probs=226.6
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|...+.+++......+ +.+..+.++..+|.++...|++++|+..+++++++.... ++.+....++..+|
T Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 54 FYLHDYAKALEYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLG 130 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHH
Confidence 346888888888888877655443 567788999999999999999999999999999998876 45566788999999
Q ss_pred HHHHHhcC--------------------HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 173 ELYRVKKA--------------------FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 173 ~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
.++...|+ +++|+.++++++.+.+... +.+....++..+|.++...|++++|+.++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999 9999999999999888763 4667788999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 233 ALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
++++...... .+....++..+|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|..
T Consensus 209 a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 209 RLLIAKEFGD--KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCC--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999876532 256677999999999999999999999999999988864 566778889999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++++++.+...... .+....++..+|.++...|++++|..++++++++.+++
T Consensus 285 ~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 285 YHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999876633 34557789999999999999999999999999987653
No 9
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=1.2e-23 Score=179.91 Aligned_cols=263 Identities=20% Similarity=0.207 Sum_probs=229.8
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... .+......++..+|.++...|++++|+.+++++++..... ++.+....++..+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 89 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNL 89 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHH
Confidence 3457999999999999887632 2444557899999999999999999999999999998887 5667789999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC--------------------HHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK--------------------LEDACTYYE 231 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 231 (377)
|.++...|++++|+.++++++++.++. ++.+....++..+|.++...|+ +++|+.+++
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999998875 3456677899999999999999 999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHH
Q 017109 232 RALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAE 311 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (377)
+++.+...... .+....++..+|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|+
T Consensus 168 ~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 168 ENLSLVTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998876633 366788999999999999999999999999999988865 55667778999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
.++++++.+..... +.+....++..+|.++...|++++|..++++++++.+...
T Consensus 244 ~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 244 EYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 99999999987653 3455678899999999999999999999999999887753
No 10
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.94 E-value=4.8e-24 Score=177.97 Aligned_cols=229 Identities=28% Similarity=0.308 Sum_probs=206.4
Q ss_pred cccCCChhhhhhhhhhhhcccccc-ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVV-SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
....|++++|...+.+++...... ++++|..+.++..+|.++...|++++|+.+++++++..++..+++++....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345688888999999988876543 4466888999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
+|.++...|++++|+.++++++++.++..+++++....++.++|.++...|++++|+.++++++++.....+++++....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999998888888899999
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-----------------------------------------CCCHH
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGE-----------------------------------------GDSMT 289 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------------------~~~~~ 289 (377)
++..+|.++...|++++|+.++++++++.+.... .+++.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999998655321 24577
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...++..+|.+|..+|++++|+.++++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999864
No 11
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.94 E-value=4e-24 Score=186.37 Aligned_cols=243 Identities=18% Similarity=0.099 Sum_probs=207.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.....++..|..+...|++++|+.++++++++.... ++.+..+.++..+|.+|...|++++|+.++++++++.++..
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~- 175 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP- 175 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-
Confidence 344567889999999999999999999999987766 55678899999999999999999999999999999988752
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
...+..+.++.++|.++...|++++|+.++++++++.++... .+....++.++|.++...|++++|+.++++++++.+
T Consensus 176 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 124567889999999999999999999999999999876532 256788999999999999999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC---------------------------------
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW--------------------------------- 327 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------- 327 (377)
... .+....++..+|.++..+|++++|+.++++++++......+
T Consensus 254 ~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 254 EKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred hhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 764 33447889999999999999999999999999875432211
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCC
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDH 371 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 371 (377)
..+.....+..+|.+|...|++++|..++++++++.+++...++
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 374 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccch
Confidence 22345567788999999999999999999999999988776544
No 12
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=6.9e-25 Score=175.70 Aligned_cols=198 Identities=20% Similarity=0.122 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...++..+|.++...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++++ .
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~- 69 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----T- 69 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C-
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-
Confidence 4467899999999999999999999999976 7888999999999999999999999999999998 3
Q ss_pred CchhHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQ-----------RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
|....++.++|.++... |++++|+..+++++++. |....++.++|.++...|++++|+.
T Consensus 70 --P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 70 --PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------PRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp --TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHHHHH
Confidence 33467899999999999 99999999999999984 6677899999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHH
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLM 350 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 350 (377)
.+++++++. ....++.++|.++...|++++|+..|+++++.. |....++..+|.++...|+++
T Consensus 140 ~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 140 SLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--------PKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTC-----
T ss_pred HHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHH
Confidence 999999983 224567899999999999999999999999873 455788999999999999999
Q ss_pred HHHHHHHHHH
Q 017109 351 EAQELFERCL 360 (377)
Q Consensus 351 ~A~~~~~~al 360 (377)
+|+..++++-
T Consensus 203 ~A~~~~~~~~ 212 (217)
T 2pl2_A 203 EAARAAALEH 212 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=9.6e-24 Score=183.15 Aligned_cols=242 Identities=16% Similarity=0.050 Sum_probs=191.8
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..|++++++ .|....++..+
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 139 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALMAL 139 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Confidence 455799999999999888643 345688999999999999999999999999988 67778899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh--
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDI--RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID-- 247 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 247 (377)
|.++...|++++|+.++++++++.......... .....+..+|.++...|++++|+.++++++... |.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~ 211 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--------GDMI 211 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--------CSSC
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--------cCcc
Confidence 999999999999999999999974432111000 123455667999999999999999999999984 33
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
...++..+|.++...|++++|+.++++++++. +....++..+|.++...|++++|+.+|++++++.
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 277 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ------ 277 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Confidence 56789999999999999999999999999872 2234578999999999999999999999999873
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHI 372 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 372 (377)
|....++..+|.++...|++++|..++++++++.++..++.++
T Consensus 278 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 320 (365)
T 4eqf_A 278 --PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQV 320 (365)
T ss_dssp --TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------
T ss_pred --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCccc
Confidence 4447899999999999999999999999999999987776554
No 14
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=3.5e-22 Score=174.49 Aligned_cols=225 Identities=16% Similarity=0.077 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..++.+|..+...|++++|+.++++++++.+.. ++.+..+.++..+|.+|...|++++|+.++++++++.++. +...
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 180 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYN 180 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccch
Confidence 355669999999999999999999999987766 5566789999999999999999999999999999998876 2236
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
+..+.++.++|.++...|++++|+.++++++++.++.. +.+..+.++.++|.++...|++++|+.++++++++.+...
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 77789999999999999999999999999999987653 3467788999999999999999999999999999988865
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS---LMEAQELFER 358 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 358 (377)
+.+....++.++|.++..+|++++|..++++++++...... +.....+..++.++...|+ +++|+.++++
T Consensus 259 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 259 --ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD---VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp --CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred --cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33566888999999999999999999999999999877633 3334446789999999999 5555554443
No 15
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=7.8e-22 Score=166.95 Aligned_cols=209 Identities=22% Similarity=0.288 Sum_probs=195.0
Q ss_pred CCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 157 FGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 157 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
.++++|....++..+|.++...|++++|+.++++++++..+..+++.+....++..+|.++...|++++|+.++++++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999988877778888999999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 237 KGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
..+..+.+++....++..+|.++...|++++|+.++++++++.....+.+.+....++..+|.++...|++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 98887777788999999999999999999999999999999988875567888899999999999999999999999999
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 317 ILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 317 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
+++..+...+.+++....++..+|.++...|++++|..++++++++.++
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999988888888888999999999999999999999999999998665
No 16
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.4e-22 Score=162.79 Aligned_cols=219 Identities=16% Similarity=0.094 Sum_probs=188.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..+..+|.++...|++++|+.+++++++. . ....++..+|.++...|++++|+.+++++++..... .
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 72 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R 72 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence 45688999999999999999999999999987 2 446789999999999999999999999999987654 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-------------------HhcCCCChhHHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG-------------------RVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
++.+....++..+|.++...|++++|+.++++++.+.. +.. ...|....++..+|.++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA-YVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHH
Confidence 34555578999999999999999999999999998421 000 0247778899999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 017109 262 QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLAL 341 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 341 (377)
.|++++|+.+++++++..+ ....++..+|.++...|++++|+.+++++++.. |....++..+|.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~ 215 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP--------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRKAT 215 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------HHHHHHHHHHHH
Confidence 9999999999999998722 224668899999999999999999999999873 344788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 342 TLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 342 ~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
++...|++++|..++++++++.++.
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhChhh
Confidence 9999999999999999999998654
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=3.7e-22 Score=173.28 Aligned_cols=248 Identities=13% Similarity=0.049 Sum_probs=205.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l 138 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMAL 138 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Confidence 456799999999999888643 345678999999999999999999999999987 56678899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCC-----------------------------------------Cchh--HHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGP-----------------------------------------EDIR--IGV 208 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------------------------~~~~--~~~ 208 (377)
|.++...|++++|+..+++++......... ..|. ...
T Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 999999999999999999887642211000 0111 357
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSM 288 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 288 (377)
++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++++. +
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~ 282 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------P 282 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Confidence 88999999999999999999999999884 5557789999999999999999999999999872 2
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC---CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 289 TCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW---NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
....++..+|.++...|++++|+.++++++++.....++ .++....++..+|.++...|++++|..+++++++..++
T Consensus 283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 234668899999999999999999999999987655222 12334788999999999999999999999999999998
Q ss_pred hCCCC
Q 017109 366 LMPQD 370 (377)
Q Consensus 366 ~~~~~ 370 (377)
.++.+
T Consensus 363 ~~~~~ 367 (368)
T 1fch_A 363 MFGLP 367 (368)
T ss_dssp HTTCC
T ss_pred hcCCC
Confidence 87753
No 18
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=3.3e-22 Score=175.00 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=132.3
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|+++++......++.. .|....++..+|.++...|++++|+..|+++++. .|....++..+|.+
T Consensus 46 ~~~~~~a~~~~~~a~~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQ-------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAA 110 (388)
T ss_dssp TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHH
Confidence 45556665555555432 2344566777777777777777777777777765 45555566666666
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCc-------------------------------hhHHHHHHHHHHHHHHccCH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPED-------------------------------IRIGVAFHNLGQFYLVQRKL 223 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~ 223 (377)
+...|++++|+..++++++. .|+. |....++..+|.++...|++
T Consensus 111 ~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQY-----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666654 1211 11123444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 017109 224 EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK 303 (377)
Q Consensus 224 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 303 (377)
++|+..+++++... |....++..+|.++...|++++|+..+++++.+ .|....++..+|.++..
T Consensus 186 ~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 186 WLAIHHFEKAVTLD--------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHH
Confidence 44444444444431 333445555555555555555555555555554 11223456677777777
Q ss_pred hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 304 ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 304 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.|++++|+..++++++. .|....++..+|.++...|++++|...+++++++
T Consensus 250 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp TTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777664 2333566777788888888888888888777764
No 19
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=3.3e-22 Score=174.95 Aligned_cols=201 Identities=23% Similarity=0.270 Sum_probs=167.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..++++++. .
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~- 199 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----D- 199 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----C-
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-
Confidence 3445566666677777777777777777665 5666778888888888888888888888888886 3
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|....++..+|.++...|++++|+..+++++... |....++.++|.++...|++++|+..++++++.
T Consensus 200 --p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 266 (388)
T 1w3b_A 200 --PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--- 266 (388)
T ss_dssp --TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 3345789999999999999999999999999884 566788999999999999999999999999985
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
. |....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|...++++++
T Consensus 267 --~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 267 --Q---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp --C---SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred --C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 2233568899999999999999999999999873 34478899999999999999999999999987
Q ss_pred H
Q 017109 362 A 362 (377)
Q Consensus 362 ~ 362 (377)
+
T Consensus 334 ~ 334 (388)
T 1w3b_A 334 V 334 (388)
T ss_dssp S
T ss_pred c
Confidence 4
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.9e-22 Score=172.30 Aligned_cols=231 Identities=16% Similarity=0.187 Sum_probs=196.6
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQG-KLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
...|++++|...+.+.+... |....++..+|.++...| ++++|+.+++++++. .|....++..+
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l 131 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLY-------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAY 131 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHH
Confidence 45688888888888877543 334578999999999999 999999999999976 56677889999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..++++++. .++. ..++..+|.++...|++++|+.+++++++.. |....+
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~ 195 (330)
T 3hym_B 132 GHSFAVESEHDQAMAAYFTAAQL-----MKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALSIA--------PEDPFV 195 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-----TTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh-----cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCChHH
Confidence 99999999999999999999998 2332 3567789999999999999999999998874 555788
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDS-MTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
+..+|.++...|++++|+.+++++++..+..+.... +....++..+|.++...|++++|+.+++++++.. |
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~ 267 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------P 267 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------c
Confidence 999999999999999999999999998766543221 3345678899999999999999999999999873 3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
....++..+|.++...|++++|..++++++++
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 34678999999999999999999999999873
No 21
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=1.4e-22 Score=168.38 Aligned_cols=237 Identities=11% Similarity=0.091 Sum_probs=195.8
Q ss_pred hcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 91 ESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
.....|++++|...+.+++...+ ....++..+|.++...|++++|+..++++++. +++......++..
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKY-------NSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNATKAKSADFEY 79 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC-------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTTTCCHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCchhHHHHHHHH
Confidence 34567999999999999886543 22357889999999999999999999999873 1222334788999
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
+|.++...|++++|+.+++++++. .|+. ..++..+|.++...|++++|+.+++++++.. |....
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~ 143 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDR-----DTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--------TTDPK 143 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--------CCCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--------CCcHH
Confidence 999999999999999999999997 3333 4789999999999999999999999998772 56678
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC---hhHHHHHHHHHHHHHHhccCC
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR---LTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~ 327 (377)
++..+|......+++++|+..+++++++.+ ....++..+|.++...|+ +++|+..++++++........
T Consensus 144 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 215 (272)
T 3u4t_A 144 VFYELGQAYYYNKEYVKADSSFVKVLELKP--------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence 899999555556799999999999998732 224567889999999999 999999999999998665433
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.......++..+|.+|...|++++|..++++++++.
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 223346889999999999999999999999999864
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=2.5e-22 Score=174.18 Aligned_cols=250 Identities=12% Similarity=0.067 Sum_probs=190.5
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH--hHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP--HVASACN 169 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~ 169 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..++++++........... .....+.
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQ-------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------
T ss_pred HHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHH
Confidence 345799999999999888653 3446789999999999999999999999999973221000000 0133445
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.+|.++...|++++|+.+++++++. .|+.. ...++..+|.++...|++++|+.+++++++.. |...
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~ 247 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQ-----NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDY 247 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHH-----SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHh-----CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCH
Confidence 5699999999999999999999998 33310 25688999999999999999999999999884 5567
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
.++..+|.++...|++++|+.++++++++. |....++..+|.++...|++++|+.+|++++++.....++.+
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 319 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQ--------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcc
Confidence 789999999999999999999999999872 223567889999999999999999999999999877655433
Q ss_pred hh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC
Q 017109 330 LD----TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQD 370 (377)
Q Consensus 330 ~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 370 (377)
+. ...++..++.++...|+.+.+....++.++...+.++.+
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~ 364 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLD 364 (365)
T ss_dssp -------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTTCC
T ss_pred cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcCCC
Confidence 22 357889999999999999999999988877776666543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=1.2e-21 Score=170.08 Aligned_cols=239 Identities=16% Similarity=0.136 Sum_probs=187.1
Q ss_pred CCChhhhhh-hhhhhhccccccccchh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 95 QNDTEGENA-FGLRKIEDGSVVSNIHT-SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 95 ~~~~~~a~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
.|++++|.. .+.+++.... +.| .....++.+|..+...|++++|+..++++++. .|....++..+|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 105 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEE----ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLG 105 (368)
T ss_dssp --------CHHHHCCCCCCS----SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCC----CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 366677666 5555554322 222 23566889999999999999999999999986 667788999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC---------
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH--------- 243 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------- 243 (377)
.++...|++++|+.+++++++. .|+ ...++..+|.++...|++++|+..+++++.........
T Consensus 106 ~~~~~~g~~~~A~~~~~~al~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 106 TTQAENEQELLAISALRRCLEL-----KPD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred HHHHHCcCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence 9999999999999999999997 333 35789999999999999999999999887643211000
Q ss_pred --------------------------------CChh--HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH
Q 017109 244 --------------------------------GNID--YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT 289 (377)
Q Consensus 244 --------------------------------~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (377)
..|. ...++..+|.++...|++++|+.++++++++. +.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~ 249 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PN 249 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TT
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cC
Confidence 0122 46788999999999999999999999999872 22
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 290 CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQ 369 (377)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 369 (377)
...++..+|.++...|++++|+.++++++++. |....++..+|.++...|++++|..++++++++.+...++
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 24568899999999999999999999999873 4447889999999999999999999999999998876443
No 24
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.89 E-value=9.3e-21 Score=160.05 Aligned_cols=247 Identities=12% Similarity=0.054 Sum_probs=196.2
Q ss_pred cCCChhhhhhhhhhhhcccc----ccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGS----VVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
+.|++++|..+..++..... ...++.......+...|.+|...|++++|+..|.+++++..+. .+....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 45667777766665554322 1145667777888889999999999999999999999998876 44556788999
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
++|.+|..+|++++|+.++++++++..... +....+.++.++|.+|.. |++++|+.+|++++++...... .....
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~--~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER--LRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC--hhHHH
Confidence 999999999999999999999999987652 344567899999999999 9999999999999999865321 24457
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 329 (377)
.++.++|.++..+|++++|+.++++++++.+... ..+.....+..+|.++..+|++++|+.+|++++ +..... .
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~---~ 229 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS---G 229 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST---T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC---C
Confidence 8899999999999999999999999999988865 344556678899999999999999999999999 533221 1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHH
Q 017109 330 LDTVIAAEGLALTLQSTGSLMEAQE 354 (377)
Q Consensus 330 ~~~~~~~~~la~~~~~~g~~~~A~~ 354 (377)
......+..++..+ ..|+.+.+..
T Consensus 230 ~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 230 SEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 22345566667666 5677665555
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=7.1e-22 Score=168.68 Aligned_cols=235 Identities=12% Similarity=0.004 Sum_probs=198.1
Q ss_pred hhcccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 90 IESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
......|++++|...+.+.+...+ ....++..++.++...|++++|+..++++++. .|....++.
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~ 94 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDP-------FHASCLPVHIGTLVELNKANELFYLSHKLVDL--------YPSNPVSWF 94 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-------TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSTHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-------CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHH
Confidence 345567999999999888875432 33456777889999999999999999999987 667778999
Q ss_pred HHHHHHHHhc-CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 170 NLAELYRVKK-AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 170 ~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
.+|.++...| ++++|+.+++++++. .++ ...++..+|.++...|++++|+..++++++.. |..
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~ 158 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTL-----EKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------KGC 158 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTT-----CTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------TTC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------ccc
Confidence 9999999999 999999999999986 233 34679999999999999999999999999885 444
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
..++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.+++++++......+..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 230 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIA--------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc
Confidence 5667889999999999999999999998862 22346688999999999999999999999999876654432
Q ss_pred C-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 329 S-LDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 329 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
. +....++..+|.++...|++++|..++++++++.
T Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 2 3346789999999999999999999999999863
No 26
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.89 E-value=1.9e-21 Score=163.10 Aligned_cols=233 Identities=13% Similarity=0.033 Sum_probs=181.6
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....+..+...|.+|...|++++|+..|++++++..+. .+.+..+.++.++|.+|..+|++++|+.++++++++....
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 44456677788999999999999999999999998776 4445678999999999999999999999999999998775
Q ss_pred cCCCchhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
. +....+.++.++|.+|... |++++|+.+|++++++...... ......++.++|.++..+|++++|+.+|+++++
T Consensus 111 g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 111 G--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS--VALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp T--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 3445678999999999996 9999999999999999864321 133467899999999999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH--HcCCHHHHHHH
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ--STGSLMEAQEL 355 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~ 355 (377)
+.+.... .......++.++|.++..+|++++|+.+|++++++...... ......+..++..+. ..+++++|+..
T Consensus 187 ~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 187 SSMGNRL-SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp TTSSCTT-TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHhcCCc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7543321 01234456889999999999999999999999887544321 111345556666665 45778888888
Q ss_pred HHHHHH
Q 017109 356 FERCLE 361 (377)
Q Consensus 356 ~~~al~ 361 (377)
|++++.
T Consensus 263 ~~~~~~ 268 (292)
T 1qqe_A 263 FDNFMR 268 (292)
T ss_dssp HTTSSC
T ss_pred hccCCc
Confidence 766544
No 27
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.88 E-value=1.4e-20 Score=163.99 Aligned_cols=262 Identities=13% Similarity=0.011 Sum_probs=197.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHH--HHHHHcCCHHHHH---------HHHHHHHHHHHhhCCCC
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSG--RDYFLQGKLAEAE---------KLFLSALQEAKEGFGER 160 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~---------~~~~~al~~~~~~~~~~ 160 (377)
.....++++|..+..+..........+.. . ..++.+- +.....+.+..+. ..+++.-...... +
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~-~-~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~---~ 96 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQD-L-LIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL---T 96 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHH-H-HHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---H
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHH-H-HHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---c
Confidence 34577888888777765554444433222 2 2333322 2222223333222 3333322111110 1
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+......++..|..+...|++++|+.++++++++.... ++.+..+.++..+|.+|...|++++|+.++++++++..+.
T Consensus 97 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 12234467789999999999999999999999987765 3567788999999999999999999999999999998754
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.+ ..+..+.++.++|.++...|++++|+.++++++++.+..+ +......++.++|.+|..+|++++|+.++++++++
T Consensus 175 ~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 175 PL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 32 1245788999999999999999999999999999998875 55677888999999999999999999999999998
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.+... ++....++..+|.++...|++++|..++++++++.++.
T Consensus 252 ~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 252 SREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 87653 34558899999999999999999999999999986554
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=1.2e-20 Score=160.86 Aligned_cols=249 Identities=11% Similarity=0.006 Sum_probs=201.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l 95 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAAL 95 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCCHHHHHHH
Confidence 345688888888888877543 335678889999999999999999999999987 56667889999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcC-----------------------------------------CCchhHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFG-----------------------------------------PEDIRIGVAF 210 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------------------~~~~~~~~~~ 210 (377)
|.++...|++++|+..++++++....... ...+....++
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 99999999999999999888764211000 0012235678
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHH
Q 017109 211 HNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTC 290 (377)
Q Consensus 211 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 290 (377)
..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+++++++.. +..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~ 239 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--------PGY 239 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCC
Confidence 899999999999999999999999874 5556789999999999999999999999999862 123
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 291 IRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD----TVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
..++..+|.++...|++++|+.++++++.......+..... ...++..++.++...|++++|...++++++..++.
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 45678999999999999999999999999875432222111 57889999999999999999999999999999988
Q ss_pred CCCCC
Q 017109 367 MPQDH 371 (377)
Q Consensus 367 ~~~~~ 371 (377)
++.+.
T Consensus 320 ~~~~~ 324 (327)
T 3cv0_A 320 FGLQS 324 (327)
T ss_dssp TTSSC
T ss_pred hhHHH
Confidence 77554
No 29
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=5.1e-21 Score=149.13 Aligned_cols=168 Identities=18% Similarity=0.226 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...+|+.+|.++...|++++|+..|++++++ +|....++..+|.++...|++++|+..+.+++.. .+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~ 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DT 70 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cc
Confidence 4578999999999999999999999999998 7888899999999999999999999999999887 33
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
+. ..++..+|.++...++++.|...+.+++... |....++..+|.++...|++++|+..|++++++
T Consensus 71 ~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 71 TS---AEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 33 5788999999999999999999999999884 666788999999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 22335678999999999999999999999999873
No 30
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.88 E-value=9e-21 Score=175.29 Aligned_cols=210 Identities=15% Similarity=0.141 Sum_probs=181.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
|....++..+|.+|...|++++|+..|+++++. .|....++..++.+|...|++++|+..++++++.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 436 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL----- 436 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 445678889999999999999999999999987 5667788999999999999999999999999876
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.+++ ..++..+|.+|...|++++|+.+|+++++.. +....++..+|.++...|++++|+.+++++++..
T Consensus 437 ~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 437 FQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALF--------QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp TTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Cccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 2333 4688899999999999999999999998873 4456789999999999999999999999999987
Q ss_pred HHcCCCCCHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 280 EENGEGDSMT-CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 280 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
++.+ ..+. ...++..+|.++...|++++|++.++++++.. |....++..++.+|...|++++|..++++
T Consensus 506 ~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 506 KKTQ--SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHSC--CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccc--cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7653 2233 36678999999999999999999999999873 33468899999999999999999999999
Q ss_pred HHHHH
Q 017109 359 CLEAR 363 (377)
Q Consensus 359 al~~~ 363 (377)
++++.
T Consensus 576 ~l~~~ 580 (597)
T 2xpi_A 576 SLAIS 580 (597)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99863
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=9.9e-21 Score=155.29 Aligned_cols=205 Identities=16% Similarity=0.083 Sum_probs=178.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+.++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. .
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~ 101 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-----D 101 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----C
Confidence 34789999999999999999999999999987 5666889999999999999999999999999987 3
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++ ...++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.+++++++..
T Consensus 102 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 171 (252)
T 2ho1_A 102 SR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN- 171 (252)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred cC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 33 357899999999999999999999999887 12246678899999999999999999999999999862
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
+. ...++..+|.++...|++++|+.+++++++.. +....++..++.++...|++++|..++++++
T Consensus 172 ----~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 172 ----RN---QPSVALEMADLLYKEREYVPARQYYDLFAQGG--------GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp ----SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 12 24567899999999999999999999988642 2336778899999999999999999999998
Q ss_pred HHH
Q 017109 361 EAR 363 (377)
Q Consensus 361 ~~~ 363 (377)
+..
T Consensus 237 ~~~ 239 (252)
T 2ho1_A 237 RLY 239 (252)
T ss_dssp HHC
T ss_pred HHC
Confidence 853
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=1.5e-21 Score=159.13 Aligned_cols=203 Identities=16% Similarity=0.179 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..++.+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. .
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~ 87 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL-----D 87 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Confidence 45678899999999999999999999999975 5667889999999999999999999999999987 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
+ ....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.+++++++..+
T Consensus 88 ~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 88 S---SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred C---cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 2 335789999999999999999999999999874 44467889999999999999999999999998722
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCL 360 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 360 (377)
....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|..++++++
T Consensus 157 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 157 --------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--------PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp --------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 223467899999999999999999999998873 3336789999999999999999999999999
Q ss_pred HHH
Q 017109 361 EAR 363 (377)
Q Consensus 361 ~~~ 363 (377)
++.
T Consensus 221 ~~~ 223 (243)
T 2q7f_A 221 DIQ 223 (243)
T ss_dssp HHC
T ss_pred ccC
Confidence 853
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=3.6e-20 Score=148.97 Aligned_cols=208 Identities=20% Similarity=0.132 Sum_probs=178.0
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 71 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--- 71 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Confidence 34567789999999999999999999999999987 5666789999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
.++. ..++..+|.++... |++++|+.+++++++ .+..+....++..+|.++...|++++|+.++++++
T Consensus 72 --~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 72 --KPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp --CTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333 56889999999999 999999999999987 12346667889999999999999999999999998
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
+..+ + ...++..+|.++...|++++|..+++++++... . .....+..++.++...|+.++|..++
T Consensus 141 ~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 141 AAQP-----Q---FPPAFKELARTKMLAGQLGDADYYFKKYQSRVE----V---LQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHST-----T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----S---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCC-----C---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8622 2 245678999999999999999999999998752 0 22566788899999999999999999
Q ss_pred HHHHHH
Q 017109 357 ERCLEA 362 (377)
Q Consensus 357 ~~al~~ 362 (377)
+.+...
T Consensus 206 ~~~~~~ 211 (225)
T 2vq2_A 206 AQLQAN 211 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 34
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.88 E-value=1.2e-20 Score=159.47 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=185.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHhh-C--CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEG-F--GERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFH 211 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 211 (377)
..|++++|.++++++.+..... + +++.......+...|.+|...|++++|+.++.+++++..+.. +....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 4578899999999998876531 2 234445567788889999999999999999999999988763 4556788999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 017109 212 NLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCI 291 (377)
Q Consensus 212 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 291 (377)
++|.+|..+|++++|+.+|++++++...... ......++.++|.+|.. |++++|+.+|++++++.+..+ +.....
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGT--PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHH
Confidence 9999999999999999999999999865432 24567889999999999 999999999999999988764 445567
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
.++.++|.++..+|++++|+.+|++++.+...... .+....++..++.++..+|++++|..++++++ +.+.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 88999999999999999999999999999876532 23446688899999999999999999999998 5443
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=8.4e-21 Score=147.91 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+.++.++|.+|..+|++++|+..|++++++ .|+ ...++..+|.++...|++++|+..+.+++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----DPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------ 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 3678999999999999999999999999998 333 46789999999999999999999999998874
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
+....++..+|.++...++++.|...+.+++++. +....++..+|.++..+|++++|++.|++++++.
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-- 137 (184)
T 3vtx_A 70 --TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-- 137 (184)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred --chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--
Confidence 5567788999999999999999999999999872 2234567889999999999999999999999873
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|....++..+|.+|..+|++++|+.+|++++++.++
T Consensus 138 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 138 ------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred ------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 455789999999999999999999999999997664
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.88 E-value=5.3e-21 Score=165.11 Aligned_cols=202 Identities=9% Similarity=-0.056 Sum_probs=177.7
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA-FDKAEPLYLEAIKILQ 196 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 196 (377)
-.|....++..+|.++...|++++|+..+++++++ +|....++.++|.++...|+ +++|+..+++++.+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-- 161 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-- 161 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence 45677899999999999999999999999999998 88889999999999999997 99999999999998
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
+|....+++++|.++..+|++++|+..|++++++. |....++.++|.++...|++++|+.++++++
T Consensus 162 ------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 162 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34446899999999999999999999999999984 7778899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHH-hCChhHH-----HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC--C
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVK-ANRLTDA-----ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG--S 348 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 348 (377)
++ .+....++.++|.++.. .|..++| +.+|++++.+. |....++..++.++...| +
T Consensus 228 ~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--------P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 228 KE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTTTCGGG
T ss_pred Hh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHccCccc
Confidence 97 23345678999999999 5665888 58999999873 445788999999999888 6
Q ss_pred HHHHHHHHHHH
Q 017109 349 LMEAQELFERC 359 (377)
Q Consensus 349 ~~~A~~~~~~a 359 (377)
+++|+..++++
T Consensus 292 ~~~a~~~~~~~ 302 (382)
T 2h6f_A 292 YPNLLNQLLDL 302 (382)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 78888777654
No 37
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=3.3e-21 Score=178.95 Aligned_cols=175 Identities=22% Similarity=0.272 Sum_probs=158.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|..+.+++++|.++...|++++|+..|++++++ +|....++.++|.++..+|++++|+.+|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 46778899999999999999999999999999998 7888999999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+|....++.++|.++..+|++++|++.|++++++. |....++.++|.++..+|++++|+..|+++++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34446899999999999999999999999999984 67788999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
+ .|....++.++|.++..+|++++|.+.+++++++....
T Consensus 140 l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 L--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp H--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred h--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 7 22335678999999999999999999999999987553
No 38
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.87 E-value=3.3e-19 Score=155.01 Aligned_cols=261 Identities=10% Similarity=0.001 Sum_probs=198.6
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|+++++.....+++.... ..+......++..+|.++...|++++|+..+++++.+.... ++......++..+|
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la 100 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQS 100 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHH
Confidence 346888888888888887553 22334466788999999999999999999999999998775 33345577889999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|+.+++++++..+...++.++....++.++|.++...|++++|..++++++.+..... ++....++
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~ 177 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---PQQQLQCL 177 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---GGGGHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---cHHHHHHH
Confidence 999999999999999999999988875554567788899999999999999999999999999875432 12356788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..+|.++...|++++|..++++++.+....+.+ ..........++.++...|++++|..++++++... .+ .....
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~-~~~~~ 252 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE---FA-NNHFL 252 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC---CT-TCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC---CC-cchhh
Confidence 999999999999999999999999886554311 11112222244566778888888888888776431 11 11112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
...+..++.++...|++++|...+++++...+.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 334567778888888888888888887777655
No 39
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=4.7e-21 Score=177.95 Aligned_cols=175 Identities=22% Similarity=0.226 Sum_probs=158.2
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
..|..+.++.++|.++..+|++++|+.+|++++++ +|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-- 73 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-- 73 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 36888999999999999999999999999999998 33446899999999999999999999999999984
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
|....++.++|.++..+|++++|++.|++++++ .+....++.++|.+|..+|++++|++.|+++++
T Consensus 74 ------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 74 ------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777889999999999999999999999999997 233456789999999999999999999999999
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 320 IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
+. |....++.++|.++..+|++++|.+.+++++++.+..
T Consensus 140 l~--------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 LK--------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HC--------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hC--------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 83 4557899999999999999999999999999998764
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.3e-19 Score=154.86 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=188.3
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHh
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSK---------WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPH 163 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 163 (377)
...|++++|...+.+++...+..+ +.+.. ...+..+|.++...|++++|+..++++++. .|.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~ 152 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQ-EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVW 152 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHcCChHHHHHHHHHHHhcCCccc-ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC
Confidence 346888888888888876533100 11111 112234489999999999999999999987 566
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
...++..+|.++...|++++|+..++++++. .|+. ..++..+|.++...|++++|+..++++++.. +
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~ 219 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKL-----KSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-----Q 219 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----c
Confidence 7789999999999999999999999999986 3333 5789999999999999999999999999874 3
Q ss_pred CChhHHH---------HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 244 GNIDYAD---------TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 244 ~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
+++.... ....+|.++...|++++|+..++++++..+. +.......+..+|.++...|++++|+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS----VAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----SHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3333222 2335589999999999999999999987321 23334456788999999999999999999
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+++++.. |....++..+|.++...|++++|..++++++++
T Consensus 296 ~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQME--------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999872 444789999999999999999999999999984
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=6.9e-21 Score=152.36 Aligned_cols=187 Identities=12% Similarity=0.100 Sum_probs=150.4
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.. .|....++..+|.++...|++++|+..+++++++ +|....++..+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~l 79 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKE-------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVL 79 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTT-------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHH
Confidence 44578999999999888854 3445688999999999999999999999999998 78888999999
Q ss_pred HHHHHHh-----------cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 172 AELYRVK-----------KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 172 a~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
|.++... |++++|+..+++++++ .|+ ...++.++|.++...|++++|+..|++++++.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 148 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPR---YAPLHLQRGLVYALLGERDKAEASLKQALALE--- 148 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----Ccc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---
Confidence 9999999 9999999999999998 333 35789999999999999999999999999982
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
....++.++|.++...|++++|+..|++++++ .|....++..+|.++...|++++|+..++++-
T Consensus 149 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 ------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---------------
T ss_pred ------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 33567899999999999999999999999987 22334568899999999999999999998764
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=1.7e-21 Score=174.33 Aligned_cols=204 Identities=14% Similarity=0.082 Sum_probs=180.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKL-AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
..+..+.+++.+|.++...|++ ++|+..|+++++. +|....++..+|.+|...|++++|+.+|++++++
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-- 166 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-- 166 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 4456788999999999999999 9999999999998 6778899999999999999999999999999987
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQ---------RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ----- 262 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----- 262 (377)
.|+ ..++.++|.++... |++++|+..+++++++. |....++.++|.++...
T Consensus 167 ---~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 167 ---CKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp ---CCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---CCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHhhc
Confidence 333 48899999999999 99999999999999984 66678999999999999
Q ss_pred ---CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 017109 263 ---GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGL 339 (377)
Q Consensus 263 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 339 (377)
|++++|+.+|++++++.+. .+....++.++|.+|...|++++|+..|++++++. |....++..+
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~a~~~l 298 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--------PAWPEPQQRE 298 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Confidence 9999999999999997221 11456778999999999999999999999999883 4447889999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 017109 340 ALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 340 a~~~~~~g~~~~A~~~~~~a 359 (377)
+.++...|++++|+..+.+.
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999876543
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.87 E-value=5.2e-21 Score=165.18 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=186.8
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGK-LAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
...|++++|...+.+++.. +|....+++.+|.++...|+ +++|+..|++++++ +|....++.++
T Consensus 108 ~~~g~~~~Al~~~~~al~l-------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~ 172 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIEL-------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHR 172 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHh-------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHH
Confidence 3468889999999888854 34566899999999999997 99999999999998 78889999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..|++++++ +|....++.++|.++..+|++++|+.++++++++. |....+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--------P~~~~a 236 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--------VRNNSV 236 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHH
Confidence 99999999999999999999998 34446899999999999999999999999999984 777889
Q ss_pred HHHHHHHHHH-cCChhhH-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHh
Q 017109 252 MYHLATVLYL-QGKENDS-----EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKAN--RLTDAETVQRKILHIMES 323 (377)
Q Consensus 252 ~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~ 323 (377)
++++|.++.. .|..++| +.++++++++ .|....++.+++.++...| ++++|++.++++ +.
T Consensus 237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--- 304 (382)
T 2h6f_A 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--- 304 (382)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---
Confidence 9999999999 5665888 5889999987 2233457889999999988 688998887664 21
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HH
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTG--------S-LMEAQELFERC-LE 361 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~ 361 (377)
.+....++..+|.+|..+| + +++|+.+|+++ ++
T Consensus 305 -----~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 305 -----SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp -----TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred -----CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 2444788999999999885 2 58898888887 54
No 44
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=6.9e-20 Score=163.37 Aligned_cols=234 Identities=15% Similarity=0.089 Sum_probs=189.5
Q ss_pred cccCCChhhhhhhhhhhhccccccccchh---hhH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHT---SKW---------RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE 159 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 159 (377)
....|++++|...+.+++.... +.+ ... ..+..+|..+...|++++|+..++++++.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 172 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP----SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV------- 172 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHcCCHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 3457899999988888876443 333 111 12455688899999999999999999987
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
.|....++..+|.+|...|++++|+.+++++++.. ++. ..++..+|.++...|++++|+..+++++...
T Consensus 173 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 241 (450)
T 2y4t_A 173 -CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-----NDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-- 241 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----CSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 56778899999999999999999999999999872 233 5789999999999999999999999999763
Q ss_pred hcCCCChhHHHHH---------HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHH
Q 017109 240 VLGHGNIDYADTM---------YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA 310 (377)
Q Consensus 240 ~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (377)
++++.....+ ..+|.++...|++++|+.++++++++.+ .+.......+..+|.++...|++++|
T Consensus 242 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 242 ---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP----SIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC----SSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3233322222 3449999999999999999999998621 12233456788999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 311 ETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 311 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+.+++++++.. |....++..+|.++...|++++|..++++++++
T Consensus 315 ~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 315 IRVCSEVLQME--------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999872 444789999999999999999999999999984
No 45
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.9e-20 Score=170.78 Aligned_cols=232 Identities=15% Similarity=0.117 Sum_probs=197.6
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... . ..++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~-------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 316 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHP-------T-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHR 316 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCC-------C-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHH
Confidence 3447888899988888876432 2 578899999999999999999999999987 66778899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..++++++. .++. ..++..+|.++...|++++|+.+++++++.. |....+
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~ 380 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSL-----NPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKF--------PTLPEV 380 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHH
Confidence 99999999999999999999997 3333 3688999999999999999999999999884 555678
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh----------CChhHHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA----------NRLTDAETVQRKILHIM 321 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~ 321 (377)
+..+|.++...|++++|+..++++++..+..... ......+..+|.++... |++++|+.+++++++..
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI--HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC--SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh--HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999998776422 22233456788999999 99999999999999873
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 322 ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
|....++..+|.++...|++++|..++++++++.+.
T Consensus 459 --------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 459 --------PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred --------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 444688999999999999999999999999997543
No 46
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=4.4e-20 Score=152.28 Aligned_cols=209 Identities=18% Similarity=0.100 Sum_probs=176.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
+.....++.+|..++..|++++|+..|+++++.. ++++....+++.+|.++...|++++|+..++++++.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----- 81 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI----- 81 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----
Confidence 4456889999999999999999999999999762 344555899999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--------------HHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLV--------QRKLEDACTYYERALKIKGRVLGHGNIDYADTM--------------YHLAT 257 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~ 257 (377)
.|+++....+++.+|.++.. .|++++|+..|++++... ++++....+. ..+|.
T Consensus 82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~ 156 (261)
T 3qky_A 82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAAR 156 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778899999999999 999999999999999884 4444444444 88999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh----------CChhHHHHHHHHHHHHHHhccCC
Q 017109 258 VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA----------NRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
++...|++++|+..|+++++.. ++++....++..+|.+|... |++++|+..|+++++.. +
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-----p 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-----P 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----T
T ss_pred HHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----C
Confidence 9999999999999999999873 23445667789999999977 89999999999999874 4
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHH
Q 017109 328 NSLDTVIAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~~g~~~~A~ 353 (377)
+++....+...++.++...++++++.
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 56667788888999988888776543
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.1e-19 Score=155.01 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=188.8
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... |....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 77 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAARLQR 77 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchHHHHH
Confidence 445799999999999888643 334578999999999999999999999999987 56667899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL------------GQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
|.++...|++++|+..++++++. .|.......++..+ |.++...|++++|+..++++++..
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 150 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-- 150 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Confidence 99999999999999999999986 22000233444444 899999999999999999999874
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
|....++..+|.++...|++++|+..++++++. .+....++..+|.++...|++++|+..++++++
T Consensus 151 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 151 ------VWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555788999999999999999999999999875 222345688999999999999999999999997
Q ss_pred HHHhccCCCChhHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 320 IMESSKGWNSLDTVI---------AAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.. ++++.... ....+|.++...|++++|...++++++..
T Consensus 217 ~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 217 LD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 63 22332222 23355889999999999999999998853
No 48
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=7.8e-20 Score=164.12 Aligned_cols=222 Identities=15% Similarity=0.035 Sum_probs=174.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE-RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
+++..+.+++.+|.++...|++++|+++|++|+++.+...+. .++....++.++|.+|..+|++++|+.++++++++.+
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 344457889999999999999999999999999998776432 3567788999999999999999999999999999998
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---HHHcCChhhHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQ--RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV---LYLQGKENDSEAL 271 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~ 271 (377)
...++.++..+.++.++|.++... +++++|+.+|++++++. |....++..++.+ +...++.++|++.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--------p~~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--------PKNPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 887666666678888888877665 57999999999999984 4445566666666 4456888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH----HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC
Q 017109 272 FLESIRILEENGEGDSMTCIRRLRYLAQT----YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG 347 (377)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~----~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 347 (377)
+++++++. ++.+ .++..+|.. +...|++++|..++++++... |....++..+|.+|...|
T Consensus 198 ~~~al~l~-----p~~~---~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 198 LRQAIRLN-----PDNQ---YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--------PGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHHHC-----SSCH---HHHHHHHHHHHHCC------CHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcC-----Ccch---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHHHHcC
Confidence 99999872 2222 234445544 445678899999999998873 444788999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 017109 348 SLMEAQELFERCLEAR 363 (377)
Q Consensus 348 ~~~~A~~~~~~al~~~ 363 (377)
++++|+..+++++++.
T Consensus 262 ~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 262 EPDKAIELLKKALEYI 277 (472)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhC
Confidence 9999999999999864
No 49
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=1.5e-19 Score=161.28 Aligned_cols=229 Identities=11% Similarity=0.088 Sum_probs=187.6
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|...+.+++.. .|....++..+|.++...|++++|+..++++++. .|....++..+|
T Consensus 37 ~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 101 (450)
T 2y4t_A 37 LAAGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KMDFTAARLQRG 101 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHH
Confidence 3468888998888888754 2344688999999999999999999999999987 667788999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHH------------HHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVA------------FHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.++...|++++|+.+++++++. .++.+....+ +..+|.++...|++++|+.++++++...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 173 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--- 173 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 9999999999999999999875 3333311122 4455888999999999999999999874
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
|....++..+|.++...|++++|+..++++++..+ + ...++..+|.++...|++++|+..+++++..
T Consensus 174 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 174 -----VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-----D---NTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-----S---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55678899999999999999999999999998732 2 2456889999999999999999999999976
Q ss_pred HHhccCCCChhHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAA---------EGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
. ++++.....+ ..+|.++...|++++|..++++++++
T Consensus 241 ~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 241 D-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp C-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3 2233222222 33499999999999999999999885
No 50
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.86 E-value=4.8e-19 Score=153.99 Aligned_cols=262 Identities=15% Similarity=0.040 Sum_probs=205.4
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|.....+++......+ +......++..+|.++...|++++|+..++++++......+..++....++.++|
T Consensus 64 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 142 (373)
T 1hz4_A 64 HCKGELTRSLALMQQTEQMARQHD-VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 346888888888888887665544 3345577789999999999999999999999999988775544477888999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|..++++++.+..... ++....++..+|.++...|++++|..++++++.+......+ ........
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~ 218 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVLSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNAN 218 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHH
Confidence 999999999999999999999865541 22345788999999999999999999999999886432111 01111222
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..++.++...|++++|..++++++.... .........+..+|.++...|++++|...+++++........ ....
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~ 292 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEF----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDL 292 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCC----TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCC----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhH
Confidence 3455668899999999999999875321 111222234678999999999999999999999998776432 2334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..++..+|.++...|++++|...+++++.+.+.
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 568889999999999999999999999998775
No 51
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=1.3e-19 Score=151.90 Aligned_cols=188 Identities=11% Similarity=0.041 Sum_probs=154.5
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.+|...|++++|+.+|++++++..+.. +.+..+.++.++|.+|..+|++++|+.++++++++...... ....+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~~~~a~~ 119 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--FRRGANF 119 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHH
Confidence 5677889999999999999999987762 44566889999999999999999999999999999866432 2445778
Q ss_pred HHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCh
Q 017109 252 MYHLATVLYLQ-GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSL 330 (377)
Q Consensus 252 ~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 330 (377)
+.++|.+|... |++++|+.+|++++++.+..+ +......++.++|.++..+|++++|+.+|++++++....... ..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 196 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-QW 196 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GG
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-cH
Confidence 99999999996 999999999999999988754 334456778999999999999999999999999875332110 11
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
....++..+|.++..+|++++|+.++++++++.+..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 234578999999999999999999999998876654
No 52
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=5.8e-20 Score=167.60 Aligned_cols=232 Identities=17% Similarity=0.192 Sum_probs=192.0
Q ss_pred CChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH
Q 017109 96 NDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY 175 (377)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 175 (377)
|++++|...+.+.+...+.........+.++..+|.++...|++++|+..++++++. .|. ..++..+|.++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~ 286 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHH
Confidence 466777777777765544332233445778999999999999999999999999987 455 78899999999
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHL 255 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (377)
...|++++|+.+++++++. .++ ...++..+|.++...|++++|+..+++++... |....++..+
T Consensus 287 ~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l 350 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDL-----NPE---YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------PENVYPYIQL 350 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCSHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhcc-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Confidence 9999999999999999987 333 35789999999999999999999999999874 4445789999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHH
Q 017109 256 ATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIA 335 (377)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 335 (377)
|.++...|++++|+.+++++++..+ + ...++..+|.++...|++++|+.+++++++.......... ....
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~ 420 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFP-----T---LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV--GIGP 420 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----T---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS--TTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-----C---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH--HHHH
Confidence 9999999999999999999998722 2 2346788999999999999999999999998766543322 2455
Q ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHHH
Q 017109 336 AEGLALTLQST----------GSLMEAQELFERCLEA 362 (377)
Q Consensus 336 ~~~la~~~~~~----------g~~~~A~~~~~~al~~ 362 (377)
+..+|.++... |++++|..+++++++.
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 67888999999 9999999999999986
No 53
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=6.5e-19 Score=150.03 Aligned_cols=214 Identities=15% Similarity=0.047 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.....++.+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. .
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~ 85 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML-----D 85 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C
Confidence 34566889999999999999999999999987 5677888999999999999999999999999997 3
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--------------------------------------
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG-------------------------------------- 242 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------------- 242 (377)
|+. ..++..+|.++...|++++|+..+++++........
T Consensus 86 ~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 86 PKD---IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred cCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 333 578899999999999999999999988764211000
Q ss_pred ---CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 243 ---HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 243 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
...|....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.+++++++
T Consensus 163 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0012345678899999999999999999999999862 22245688999999999999999999999998
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 320 IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
.. |....++..+|.++...|++++|..++++++.+.+..
T Consensus 235 ~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 235 IN--------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred cC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 73 3346789999999999999999999999999987663
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=1.7e-19 Score=149.77 Aligned_cols=228 Identities=14% Similarity=0.018 Sum_probs=184.2
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+++.... .++|....++..+|.++...|++++|+..++++++. .|....++..+|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~ 85 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRA---LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGI 85 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhccc---ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHH
Confidence 45889999999998887532 245678899999999999999999999999999987 5667889999999
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
++...|++++|+.+++++++. .|+. ..++..+|.++...|++++|+.+++++++.. + .......
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~---~~~~~~~ 149 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLEL-----DPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----P---NDPFRSL 149 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhc-----Cccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----C---CChHHHH
Confidence 999999999999999999997 3333 4789999999999999999999999999874 2 2222333
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTV 333 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 333 (377)
.++ +....|++++|+..+++++...+. +.. ...++.++...++.++|+..+++++...... .+...
T Consensus 150 ~~~-~~~~~~~~~~A~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 215 (275)
T 1xnf_A 150 WLY-LAEQKLDEKQAKEVLKQHFEKSDK----EQW-----GWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLS 215 (275)
T ss_dssp HHH-HHHHHHCHHHHHHHHHHHHHHSCC----CST-----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHhcCCc----chH-----HHHHHHHHHHhcCHHHHHHHHHHHhcccccc----ccccc
Confidence 333 346679999999999998876321 111 2347777888899999999999887654332 13346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 334 IAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 334 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.++..+|.++...|++++|..++++++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88999999999999999999999999874
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.84 E-value=2.5e-19 Score=145.89 Aligned_cols=208 Identities=18% Similarity=0.206 Sum_probs=164.1
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.. .|....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 97 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEE-------NKEDAIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGA 97 (243)
T ss_dssp ---------CCTTHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHH
Confidence 34467788888888777753 2334678999999999999999999999999987 56678899999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+.+++++++. .++. ..++..+|.++...|++++|+.+++++++.. +....+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~ 161 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRA-----GMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELN--------ENDTEA 161 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----TCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CccHHH
Confidence 99999999999999999999987 3333 4678999999999999999999999999874 455678
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+.+++++++.. |.
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~ 225 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQDP--------GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--------PD 225 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--------cc
Confidence 99999999999999999999999988621 224568899999999999999999999999873 33
Q ss_pred HHHHHHHHHHHHHHc
Q 017109 332 TVIAAEGLALTLQST 346 (377)
Q Consensus 332 ~~~~~~~la~~~~~~ 346 (377)
...++..++.+....
T Consensus 226 ~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 226 HMLALHAKKLLGHHH 240 (243)
T ss_dssp CHHHHHHHTC-----
T ss_pred hHHHHHHHHHHHhhc
Confidence 355666665554443
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.84 E-value=3.6e-20 Score=153.72 Aligned_cols=206 Identities=16% Similarity=0.079 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
+.+...|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. +++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 70 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT 70 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence 45778999999999999999999999986 4555668999999999999999999999999983 2233
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
.....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+++++++.
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 3346789999999999999999999999999974 555678999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGS---LMEAQELFERCL 360 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al 360 (377)
.+....++..+|......+++++|+.+++++++.. |....++..+|.++...|+ +++|...+++++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 22334567889945555679999999999999874 3347888999999999999 999999999999
Q ss_pred HHHHhh
Q 017109 361 EARKKL 366 (377)
Q Consensus 361 ~~~~~~ 366 (377)
++....
T Consensus 207 ~~~~~~ 212 (272)
T 3u4t_A 207 EVCAPG 212 (272)
T ss_dssp HHHGGG
T ss_pred HHHhcc
Confidence 987543
No 57
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.5e-18 Score=142.46 Aligned_cols=223 Identities=9% Similarity=-0.008 Sum_probs=180.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++... ....++..+|.++...|++++|+..++++++...... ++.+....++..+
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~l 85 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-ADYKVISKSFARI 85 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-cchHHHHHHHHHH
Confidence 445789999999999888764 1246899999999999999999999999999865431 2334448999999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHH-------------------HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKIL-------------------QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
|.++...|++++|+.++++++.+. ++.. ...+....++..+|.++...|++++|+.++++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA-YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999999841 1110 03566778999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 233 ALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
++... |....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|..
T Consensus 165 a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 165 MIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99874 5556889999999999999999999999999862 2234568899999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALT 342 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 342 (377)
++++++++..+... .|....+...++.+
T Consensus 229 ~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 229 TLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred HHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 99999998755432 23335555555543
No 58
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.84 E-value=4.6e-19 Score=163.85 Aligned_cols=226 Identities=11% Similarity=0.162 Sum_probs=192.2
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|...+.+.+.. +....++..+|..+...|++++|+..|+++++. .|....++..++
T Consensus 283 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~ 346 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL--------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHL 346 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG--------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC--------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHH
Confidence 3467888888888776643 345678999999999999999999999999976 455567788999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|...+++++.. .++ ...++..+|.+|...|++++|+.+|+++++.. |....++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~ 410 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDR-----HPE---KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--------PQFGPAW 410 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-----CTT---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhh-----Ccc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHH
Confidence 9999999999999999999865 233 35788899999999999999999999999863 5567789
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..++.++...|++++|+..++++++..+ ....++..+|.+|...|++++|+++|+++++.. |..
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~ 474 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARLFQ--------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--------QYD 474 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTT--------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC
Confidence 9999999999999999999999987522 223567889999999999999999999998763 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKL 366 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 366 (377)
..++..++.++...|++++|..++++++++.++.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 6789999999999999999999999999987763
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=5.4e-19 Score=142.63 Aligned_cols=183 Identities=13% Similarity=0.069 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
..++.+|.++...|++++|+..|+++++. .| ....++..+|.++...|++++|+.+++++++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 78999999999999999999999999988 33 44567788999999999999999999999986
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI----DYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.|....++..+|.++..+|++++|+..++++++.. ++++ ....++..+|.++...|++++|+..+++++++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 44457899999999999999999999999999884 2222 12367999999999999999999999999985
Q ss_pred HHHcCCCCCHH--HHHHHHHHHHHHHHhCCh---------------------------hHHHHHHHHHHHHHHhccCCCC
Q 017109 279 LEENGEGDSMT--CIRRLRYLAQTYVKANRL---------------------------TDAETVQRKILHIMESSKGWNS 329 (377)
Q Consensus 279 ~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~ 329 (377)
.|. ...++.++|.++...|+. ++|+.++++++++.
T Consensus 147 --------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~-------- 210 (228)
T 4i17_A 147 --------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS-------- 210 (228)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred --------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------
Confidence 345 577889999999999888 88899999888873
Q ss_pred hhHHHHHHHHHHHH
Q 017109 330 LDTVIAAEGLALTL 343 (377)
Q Consensus 330 ~~~~~~~~~la~~~ 343 (377)
|....+...++.+.
T Consensus 211 p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 211 PNRTEIKQMQDQVK 224 (228)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 33355555565554
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=1.9e-18 Score=143.48 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=183.0
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFL----QGKLAEAEKLFLSALQEAKEGFGERDPHVASAC 168 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 168 (377)
...|++++|...+.+++. +....+++.+|.++.. .+++++|+.+|+++++. . ...++
T Consensus 17 ~~~~~~~~A~~~~~~a~~---------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~----~~~a~ 77 (273)
T 1ouv_A 17 YKEKDFTQAKKYFEKACD---------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------N----YSNGC 77 (273)
T ss_dssp HHTTCHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T----CHHHH
T ss_pred HhCCCHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------C----CHHHH
Confidence 345788999999988876 1234688999999999 99999999999999975 1 46788
Q ss_pred HHHHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHh
Q 017109 169 NNLAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 169 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 240 (377)
..+|.+|.. .+++++|+.+++++++. ++ ..++.++|.+|.. .+++++|+.+++++++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------CC---ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 999999999 99999999999999985 22 4789999999999 999999999999998752
Q ss_pred cCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAET 312 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 312 (377)
...++.++|.++.. .+++++|+.+++++++. .. ..++..+|.+|.. .+++++|+.
T Consensus 145 -------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 145 -------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred -------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 25678899999999 99999999999999875 22 3567899999999 999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQS----TGSLMEAQELFERCLEAR 363 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 363 (377)
+++++++. .+ ..++..+|.+|.. .+++++|..+++++++..
T Consensus 208 ~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 208 RYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999875 12 6788999999999 999999999999999863
No 61
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.9e-20 Score=167.08 Aligned_cols=230 Identities=17% Similarity=0.115 Sum_probs=195.2
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|++++|...+.+++.... . ..++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~-------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 310 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFP-------R-VNSYIYMALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHR 310 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------CTTCTHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCc-------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------CcCCHHHHHHH
Confidence 3457889999888888876532 2 678999999999999999999999999875 55667789999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+.+++++++. .+.. ..++..+|.++...|++++|+..++++++.. |....+
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~ 374 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKEL-----DPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEV 374 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHT-----CSSC---SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-----Chhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHH
Confidence 99999999999999999999986 3333 4688999999999999999999999999874 444578
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH---hCChhHHHHHHHHHHHHHHhccCCC
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK---ANRLTDAETVQRKILHIMESSKGWN 328 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~ 328 (377)
+..+|.++...|++++|+.+++++++..+... .......++..+|.++.. .|++++|+.++++++...
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~------- 445 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLD--GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD------- 445 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS--SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-------
Confidence 89999999999999999999999999876643 111123368899999999 999999999999999873
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
|....++..+|.++...|++++|..++++++++.
T Consensus 446 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 446 -PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3346889999999999999999999999999863
No 62
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.83 E-value=5.3e-19 Score=156.55 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=147.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
....+..+..+|+|++|+.++++++++.++.+|+++|..+.++.+||.+|..+|+|++|+.++++++++.++..|+++|.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 33445567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
++..+++||.+|..+|++++|+.++++|+++.+...|++||.+.....+++.++..++++++|...|.++.+.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999977653
No 63
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=9.1e-20 Score=165.32 Aligned_cols=233 Identities=15% Similarity=0.176 Sum_probs=195.9
Q ss_pred CCChhhhhhhhhhhhc-----c--ccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHH
Q 017109 95 QNDTEGENAFGLRKIE-----D--GSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASA 167 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 167 (377)
.|++++|...+.+++. . ........|....++..+|.++...|++++|+..++++++. .|. ..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~ 272 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNS 272 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHH
Confidence 7999999999998887 3 11111124778899999999999999999999999999987 455 889
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
+..+|.++...|++++|+.++++++.. .++. ..++..+|.++...|++++|+..+++++... |.
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~ 336 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKL-----DSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKELD--------PE 336 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTT-----CTTC---THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--------SS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhc-----CcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------hh
Confidence 999999999999999999999999886 3333 4688999999999999999999999999873 44
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
...++..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+.++++++.........
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE--------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 4568899999999999999999999999986322 22467889999999999999999999999986544221
Q ss_pred CChhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 017109 328 NSLDTVIAAEGLALTLQS---TGSLMEAQELFERCLEA 362 (377)
Q Consensus 328 ~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 362 (377)
.....++..+|.++.. .|++++|..+++++++.
T Consensus 409 --~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 409 --YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp --SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 1114588999999999 99999999999999985
No 64
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=6.9e-19 Score=147.03 Aligned_cols=227 Identities=11% Similarity=-0.034 Sum_probs=175.3
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
....|+++++...... ..+....++..++..+...|++++|++.+++.+.. ..+|....++..+
T Consensus 44 yi~~g~~~~al~~~~~----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~l 107 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMA 107 (291)
T ss_dssp HHHTTCHHHHHHHSCT----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHH
T ss_pred HHHCCCHHHHHHHhcc----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHH
Confidence 3445777666654322 12235688889999999999999999999998763 2246677889999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
|.++...|++++|+..+++ +++ ..++..+|.++..+|++++|+..++++++.. +++. ....
T Consensus 108 a~~~~~~g~~~~Al~~l~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l 168 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ----------GDS---LECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQL 168 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT----------CCS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHH
T ss_pred HHHHHHCCCHHHHHHHHhC----------CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHH
Confidence 9999999999999999987 223 4688999999999999999999999998873 3222 1111
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
...+..++...|++++|+..|+++++.. ++ ...++.++|.++..+|++++|+..++++++.. |.
T Consensus 169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~~-----p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--------p~ 232 (291)
T 3mkr_A 169 ATAWVSLAAGGEKLQDAYYIFQEMADKC-----SP---TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--------SG 232 (291)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhC-----CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Confidence 1122234445689999999999999861 22 34568899999999999999999999999873 45
Q ss_pred HHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHhhCCCCCCcc
Q 017109 332 TVIAAEGLALTLQSTGSLME-AQELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~ 374 (377)
...++.++|.++...|+.++ +..+++++++ ..|+||.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~-----~~P~~~~~ 271 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD-----AHRSHPFI 271 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----HCTTCHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----hCCCChHH
Confidence 57889999999999999976 5789999988 45666643
No 65
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.82 E-value=4.2e-18 Score=134.65 Aligned_cols=194 Identities=15% Similarity=0.111 Sum_probs=156.3
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|........ .+.+....++..+|.++...|++++|+.++++++++.+.. ++.+....++.++|
T Consensus 3 ~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVG 73 (203)
T ss_dssp ----CHHHHHHHHHHHH-------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHH
Confidence 34688888877222111 1333567899999999999999999999999999998876 55678899999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|+.++++++++.+.. +.+......++.++|.++...|++++|+.++++++.+.+.... ......++
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~ 150 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACAF 150 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHHH
Confidence 99999999999999999999998865 3233467889999999999999999999999999998765432 24557778
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT 300 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 300 (377)
.++|.++...|++++|..++++++++.+..+ +......+...++.+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccch
Confidence 9999999999999999999999999998876 444555555555544
No 66
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.82 E-value=2.1e-18 Score=152.79 Aligned_cols=153 Identities=11% Similarity=0.070 Sum_probs=146.7
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
...+..+..+|+|++|+..+++++++.++..|++++.++.++.++|.+|..+|+|++|+.++++++++.++..|++||.+
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+..+++||.+|..+|++++|+.++++++++.+...++++|.+......++.++..++.+++|+..|.++.+.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997765
No 67
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.9e-18 Score=155.05 Aligned_cols=239 Identities=12% Similarity=0.033 Sum_probs=182.6
Q ss_pred cccCCChhhhhhhhhhhhcccccc--ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVV--SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
....|++++|...+.++++..... ...++..+.++.++|.+|...|++++|+.++++++++.+...+..++..+.++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 445799999999999988764332 234677888999999999999999999999999999998887666677788888
Q ss_pred HHHHHHHHh--cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 170 NLAELYRVK--KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF---YLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 170 ~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
.+|.++... +++++|+.+|++++++ .|+++ .++..++.+ +...+++++|++.+++++++.
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~---~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~------- 205 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNP---EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN------- 205 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCH---HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-------
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-------
Confidence 888877665 4799999999999998 55555 455555555 445678899999999999883
Q ss_pred ChhHHHHHHHHHHHHH----HcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLY----LQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
|....++..+|..+. ..|++++|+.++++++.. .+....++..+|.+|...|++++|+..++++++.
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 444556666665554 457889999999999886 2233456789999999999999999999999987
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQST-------------------GSLMEAQELFERCLEA 362 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~ 362 (377)
. |....++..+|.+|... +.+++|...+++++++
T Consensus 277 ~--------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 277 I--------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp S--------TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 3 45578888888887643 2345666666666654
No 68
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.81 E-value=7.2e-18 Score=133.31 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=157.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
+..|++++|...++... .+.+....++..+|.++...|++++|+.++++++++.+... +.+....++.++
T Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence 56799999998554442 23446789999999999999999999999999999988752 467778899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
|.++...|++++|+.++++++.+.+... .+......++.++|.++...|++++|+.++++++++.+..+ +......+
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 149 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLP-EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACA 149 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHHHH
Confidence 9999999999999999999999987542 22236788999999999999999999999999999988765 45566777
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALT 342 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 342 (377)
+..+|.++...|++++|..++++++++.+....+ .....+...++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS--EAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHhcccch
Confidence 8999999999999999999999999998776432 2334555555443
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=3.9e-18 Score=140.59 Aligned_cols=183 Identities=16% Similarity=0.089 Sum_probs=157.1
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+.....++.+|..+...|++++|+..|+++++. .|+++....+++.+|.++..+|++++|+..|++++...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--- 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--- 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence 4556789999999999999999999999999986 55666668899999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHH--------cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYL--------QGKENDSEALFLESIRILEENGEGDSMTCIRRL--------------RYLA 298 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la 298 (377)
++++....+++.+|.++.. .|++++|+..++++++..+. ++....+. ..+|
T Consensus 83 --p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 83 --QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-----HELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp --TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-----CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-----chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999 99999999999999987433 22333333 7899
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHH
Q 017109 299 QTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST----------GSLMEAQELFERCLEAR 363 (377)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~ 363 (377)
.+|...|++++|+..|+++++.. ++++....++..+|.+|... |++++|+..++++++..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999999999999999874 33444678999999999977 99999999999999854
No 70
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.81 E-value=1.6e-17 Score=137.87 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=167.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV----KKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 196 (377)
....+++.+|..+...|++++|+.+|+++++. ....++..+|.++.. .+++++|+.+++++++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-- 71 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-- 71 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--
Confidence 34578899999999999999999999999872 224688999999999 99999999999999986
Q ss_pred HhcCCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhhH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL----QGKENDS 268 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 268 (377)
++ ..++..+|.++.. .+++++|+.+++++++. ....++.++|.++.. .+++++|
T Consensus 72 -----~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 72 -----NY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp -----TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred -----CC---HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCcccCHHHH
Confidence 22 4789999999999 99999999999999875 135789999999999 9999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH
Q 017109 269 EALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ 344 (377)
Q Consensus 269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 344 (377)
+.+++++++. .+ ..++..+|.++.. .+++++|+.+++++++.. + ..++..+|.+|.
T Consensus 134 ~~~~~~a~~~-------~~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~---~~a~~~lg~~~~ 193 (273)
T 1ouv_A 134 VEYFTKACDL-------ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------D---SPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C---HHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------Cc---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------C---HHHHHHHHHHHH
Confidence 9999999984 22 3457889999999 999999999999998651 1 578899999999
Q ss_pred H----cCCHHHHHHHHHHHHHH
Q 017109 345 S----TGSLMEAQELFERCLEA 362 (377)
Q Consensus 345 ~----~g~~~~A~~~~~~al~~ 362 (377)
. .+++++|+.+++++++.
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhC
Confidence 9 99999999999999874
No 71
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.81 E-value=4.3e-18 Score=142.75 Aligned_cols=198 Identities=12% Similarity=0.028 Sum_probs=160.6
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.+.....+...+..+...|++++|+..+.++++..... +........+..+|.++...|++++|+.+++++++...+.
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 34455677788999999999999999999998762211 1112345667789999999999999999999999875432
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.+......++.++|.+|..+|++++|+.++++++++.+.... .+. ...++.++|.+|..+|++++|+.+++++++
T Consensus 149 --~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 149 --IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp --SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 233445779999999999999999999999999988765432 233 337999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHH-HHHHHHHHHHHHhc
Q 017109 278 ILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA-ETVQRKILHIMESS 324 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 324 (377)
+.+... +......++.++|.+|..+|++++| ..++++++.+.+..
T Consensus 225 ~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 225 ISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 986643 4445677899999999999999999 88899999987665
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=2e-18 Score=154.40 Aligned_cols=191 Identities=18% Similarity=0.109 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH-hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 017109 142 AEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF-DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220 (377)
Q Consensus 142 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 220 (377)
....+++++...+... ...+..+.++..+|.++...|++ ++|+.+++++++. . |....++..+|.+|...
T Consensus 80 ~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~---p~~~~a~~~lg~~~~~~ 150 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----E---PELVEAWNQLGEVYWKK 150 (474)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----C---CCCHHHHHHHHHHHHHc
Confidence 3444444444443332 22457789999999999999999 9999999999998 3 33467999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 017109 221 RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ---------GKENDSEALFLESIRILEENGEGDSMTCI 291 (377)
Q Consensus 221 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 291 (377)
|++++|+.+|++++++. |. ..++.++|.++... |++++|+..+++++++. +...
T Consensus 151 g~~~~A~~~~~~al~~~--------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~ 213 (474)
T 4abn_A 151 GDVTSAHTCFSGALTHC--------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLDG 213 (474)
T ss_dssp TCHHHHHHHHHHHHTTC--------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCH
T ss_pred CCHHHHHHHHHHHHhhC--------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCCH
Confidence 99999999999999873 44 48899999999999 99999999999999972 2334
Q ss_pred HHHHHHHHHHHHh--------CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 292 RRLRYLAQTYVKA--------NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 292 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
.++..+|.++... |++++|+.+|++++++... .+....++..+|.+|...|++++|...|++++++.
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5788999999999 9999999999999998321 11558899999999999999999999999999863
No 73
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.80 E-value=7.6e-18 Score=141.28 Aligned_cols=195 Identities=13% Similarity=0.041 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhH---HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHV---ASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....+...+..+...|++++|+..++++++.. +..+.. ...+..+|.++...|++++|+.++++++++....
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence 34555666888999999999999999998741 222332 4456679999999999999999999999954332
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.+....+.++.++|.+|..+|++++|+.+++++++..+... .+.+..+.++.++|.+|..+|++++|+.++++++++
T Consensus 149 --~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 149 --IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp --SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 23344567899999999999999999999999999887652 245677889999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHhccC
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANR-LTDAETVQRKILHIMESSKG 326 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 326 (377)
.+... +....+.++.++|.++..+|+ +++|++++++++.+.+....
T Consensus 226 ~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 226 SCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 98875 455677889999999999995 69999999999999877643
No 74
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.80 E-value=1.4e-17 Score=139.57 Aligned_cols=198 Identities=10% Similarity=-0.039 Sum_probs=160.3
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
+.....+...+..+...|++++|+..+.++++..... +........+..+|.++...|++++|+.++++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG- 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-
Confidence 4455667778899999999999999999998863211 1122344567789999999999999999999999875432
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT-CIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.+......++.++|.+|...|++++|+.++++++++.+... +.+. ...++.++|.+|..+|++++|+.++++++++
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22244577999999999999999999999999999888764 3333 3378999999999999999999999999999
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhhC
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEA-QELFERCLEARKKLM 367 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 367 (377)
..... +......++..+|.+|..+|++++| ..++++++.+.+..-
T Consensus 226 ~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 226 SCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 85532 2334588999999999999999999 888999999887653
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=7.1e-18 Score=136.06 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP-EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
+..+..+|.++...|++++|+..|+++++. .+ .+ ..++.++|.++...|++++|+.++++++...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------ 72 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKL-----TNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKKN------ 72 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----cCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------
Confidence 378999999999999999999999999998 22 22 3577789999999999999999999999774
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
|....++..+|.++...|++++|+..+++++++.+... ........++..+|.++...|++++|+.+|++++++
T Consensus 73 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--- 146 (228)
T 4i17_A 73 --YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA-TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--- 146 (228)
T ss_dssp --CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---
T ss_pred --cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---
Confidence 67788999999999999999999999999998733210 001123467899999999999999999999999876
Q ss_pred ccCCCChh--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHH
Q 017109 324 SKGWNSLD--TVIAAEGLALTLQSTGSL---------------------------MEAQELFERCLEA 362 (377)
Q Consensus 324 ~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~ 362 (377)
+|. ...++..+|.++...|+. ++|+.++++++++
T Consensus 147 -----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 147 -----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355 678999999999999988 8899999999885
No 76
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=2.7e-17 Score=134.67 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=161.7
Q ss_pred cCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 017109 94 SQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAE 173 (377)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 173 (377)
..|++++|...+.+++... |....++..+|.++...|++++|+..++++++. .|....++..+|.
T Consensus 49 ~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~ 113 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--------DSRNARVLNNYGG 113 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHH
Confidence 3577777777777777542 334678999999999999999999999999987 5566788999999
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.+++++++.. +....++.
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~ 179 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--------RNQPSVAL 179 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------cccHHHHH
Confidence 99999999999999999987 12355567899999999999999999999999999874 44567889
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.+|.++...|++++|+.+++++++.. ++ ....+..++.++...|++++|..+++++++..
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGG-----GQ---NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----cC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999988741 12 23457789999999999999999999998873
No 77
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.79 E-value=1e-16 Score=134.38 Aligned_cols=196 Identities=10% Similarity=-0.039 Sum_probs=161.1
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR---IGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
......+...+..+...|++++|...++++++. .+..+. ....+..+|.++...|++++|+.++++++.+..
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~ 146 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence 344555666788899999999999999999874 222222 244556799999999999999999999998643
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKIL 318 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 318 (377)
. ..+......++.++|.+|...|++++|+.+++++++..+... .+.+....++.++|.+|..+|++++|+.++++++
T Consensus 147 ~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 147 T--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp C--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred c--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 122234567899999999999999999999999999988763 2567788899999999999999999999999999
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhC
Q 017109 319 HIMESSKGWNSLDTVIAAEGLALTLQSTGS-LMEAQELFERCLEARKKLM 367 (377)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 367 (377)
++....... .....++..+|.++..+|+ +++|..++++++.+.+..-
T Consensus 224 ~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 224 EISCRINSM--ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHTTBC--TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCcH--HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 998776433 4458999999999999995 6999999999999998753
No 78
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.78 E-value=3.6e-17 Score=131.30 Aligned_cols=174 Identities=20% Similarity=0.151 Sum_probs=151.6
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.|....++..+|.++...|++++|+.+++++++. .++. ..++..+|.++...|++++|+.++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSIK--- 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----Cccc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence 5778899999999999999999999999999987 2333 5789999999999999999999999999874
Q ss_pred cCCCChhHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQ-GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
+....++..+|.++... |++++|+.+++++++ . +..+....++..+|.++...|++++|+.+++++++
T Consensus 73 -----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 73 -----PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA----D--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp -----TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----S--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----C--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567889999999999 999999999999987 1 12344556788999999999999999999999998
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 320 IMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.. |....++..+|.++...|++++|..+++++++..+
T Consensus 142 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 142 AQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 73 33367899999999999999999999999998654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=1.3e-17 Score=129.67 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=149.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
......+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|..+++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 345688999999999999999999999998865 4556788999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.++. ..++..+|.++...|++++|..++++++... +....++..+|.++...|++++|+.+++++++..
T Consensus 72 ~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 72 APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 2333 5788999999999999999999999999874 4556788999999999999999999999999862
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 280 EENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
++ ...++..+|.++...|++++|..+++++++....
T Consensus 141 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 141 -----PN---EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp -----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred -----cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 12 2456789999999999999999999999987643
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.78 E-value=6.9e-17 Score=129.89 Aligned_cols=183 Identities=10% Similarity=-0.041 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
...++.+|..+...|++++|+..|+++++. .|+++....++..+|.++...|++++|+..|+++++.. |+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cC
Confidence 467889999999999999999999999987 45566667899999999999999999999999999874 55
Q ss_pred ChhHHHHHHHHHHHHHH------------------cCChhhHHHHHHHHHHHHHHcCCCCCHH-----------HHHHHH
Q 017109 245 NIDYADTMYHLATVLYL------------------QGKENDSEALFLESIRILEENGEGDSMT-----------CIRRLR 295 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~ 295 (377)
++....+++.+|.++.. .|++++|+..|+++++..+... .... ......
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~--~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ--YTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT--THHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh--hHHHHHHHHHHHHHHHHHHHH
Confidence 56666788889988876 5789999999999988644321 0000 112225
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.+|.+|...|++++|+..|+++++.. ++++....++..+|.++..+|++++|...++++....+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 78999999999999999999999875 33455678999999999999999999999998877433
No 81
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.78 E-value=1.5e-16 Score=127.88 Aligned_cols=178 Identities=13% Similarity=0.065 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...++.+|..+...|++++|+..|+++++.. ++++....++..+|.++...|++++|+..|+++++. .|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 4678899999999999999999999999862 334556789999999999999999999999999987 566
Q ss_pred chhHHHHHHHHHHHHHH------------------ccCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------
Q 017109 203 DIRIGVAFHNLGQFYLV------------------QRKLEDACTYYERALKIKGRVLGHGNIDYAD-------------- 250 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-------------- 250 (377)
++....+++.+|.++.. .|++++|+..|+++++.. |+++....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 66666788899988876 679999999999998774 33333222
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....+|.++...|++++|+..|+++++.. ++.+....++..+|.++..+|++++|++.++.+...
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 22578999999999999999999999873 345667788999999999999999999999877653
No 82
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.1e-17 Score=142.51 Aligned_cols=240 Identities=16% Similarity=0.123 Sum_probs=197.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCC---------CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGER---------DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 196 (377)
....|..+...|++++|++.|.++++..+...... ......++..+|.+|...|++++|.+++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999998643321100 123456789999999999999999999999999877
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
+. ++......+...++.++...|++++|+.++++++.+....... .....++..+|.++...|++++|..++++++
T Consensus 87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--FLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 64 2334445678889999999999999999999999998765433 5678899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
....... +.+....++..++.+|...|++++|..++++++.+......+ +......+..+|.++...|++++|..++
T Consensus 163 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 163 REFKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP-TQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8877654 667888899999999999999999999999999987765432 2335678888999999999999999999
Q ss_pred HHHHHHHHhhCCCCCC
Q 017109 357 ERCLEARKKLMPQDHI 372 (377)
Q Consensus 357 ~~al~~~~~~~~~~~~ 372 (377)
.++++.........+.
T Consensus 240 ~~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 240 FESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHHTTTSSCH
T ss_pred HHHHHHhhhhhhhhhH
Confidence 9999998887655443
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.77 E-value=2.4e-17 Score=128.12 Aligned_cols=173 Identities=13% Similarity=0.032 Sum_probs=149.5
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.......+..+|.++...|++++|+..++++++. .+. ...++..+|.++...|++++|+.+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--- 72 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA-----DAF---DVDVALHLGIAYVKTGAVDRGTELLERSLADA--- 72 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT-----TSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----Ccc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 3456788999999999999999999999998875 222 35789999999999999999999999999873
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+....++..+|.++...|++++|+.+++++++..+ . ...++..+|.++...|++++|+.+++++++.
T Consensus 73 -----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 73 -----PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-----I---NFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp -----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----H---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 55567899999999999999999999999998721 2 2356788999999999999999999999987
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
. +....++..+|.++...|++++|..++++++++.+.
T Consensus 140 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 140 R--------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred C--------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3 333688999999999999999999999999997654
No 84
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.76 E-value=2e-16 Score=119.96 Aligned_cols=159 Identities=20% Similarity=0.214 Sum_probs=140.2
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+.+..+.++..+|.++...|++++|+.+++++++..+... +....+.++..+|.++...|++++|+.++++++.+...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999988752 45666789999999999999999999999999999876
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
... .+....++.++|.++...|++++|+.++++++++.+... +.+....++..+|.++...|++++|..+++++++
T Consensus 82 ~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 LKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCC--cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 532 355678899999999999999999999999999988865 5667788899999999999999999999999999
Q ss_pred HHHhc
Q 017109 320 IMESS 324 (377)
Q Consensus 320 ~~~~~ 324 (377)
+.++.
T Consensus 158 ~~~~~ 162 (164)
T 3ro3_A 158 ISREV 162 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87543
No 85
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.76 E-value=1.8e-16 Score=120.27 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=140.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+.+..+.++..+|.++...|++++|+.+++++++..... ++......++..+|.++...|++++|+.++++++++.+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 556678899999999999999999999999999998876 445667789999999999999999999999999999877
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
. ++.+....++.++|.++...|++++|+.++++++........ .+....++..+|.++...|++++|+.+++++++
T Consensus 82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5 345666789999999999999999999999999999876532 366688899999999999999999999999999
Q ss_pred HHHHc
Q 017109 278 ILEEN 282 (377)
Q Consensus 278 ~~~~~ 282 (377)
+.++.
T Consensus 158 ~~~~~ 162 (164)
T 3ro3_A 158 ISREV 162 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87654
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.76 E-value=3.9e-18 Score=159.19 Aligned_cols=200 Identities=13% Similarity=-0.034 Sum_probs=160.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|++++|+..++++++..-......+|....++..+|.++...|++++|+..++++++. .+++ ..+++++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-----VGWR---WRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCC---HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----Ccch---HHHHHHH
Confidence 7789999999999999821111111226777889999999999999999999999999997 2333 5799999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRR 293 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (377)
|.++..+|++++|+..|++++++. |....++.++|.++...|++++ +..|++++++ .+....+
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a 536 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISA 536 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHH
Confidence 999999999999999999999985 6667889999999999999999 9999999987 2233457
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhh
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEA-QELFERCLEARKKL 366 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 366 (377)
+.++|.++..+|++++|+..|++++++ .|....++..+|.++...++.+++ ..-++++++....+
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 899999999999999999999999876 366688999999999887775555 66677777766654
No 87
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.2e-16 Score=133.36 Aligned_cols=221 Identities=11% Similarity=0.006 Sum_probs=169.3
Q ss_pred cccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 017109 92 STSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL 171 (377)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 171 (377)
+...|+|.++.....+... . ++.........+++.|...|++++|+..++. . .+....++..+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~----~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~-~~~~~~a~~~l 71 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP----S--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------S-SAPELQAVRMF 71 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC----C--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------T-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc----C--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------c-CChhHHHHHHH
Confidence 4557888888877654322 1 1222345667789999999999999976643 1 34467888999
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
+..+...|++++|++.+++.+.. + .+|....++..+|.++...|++++|+..+++ +....+
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~-----~-~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~~~ 132 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSR-----S-VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSLEC 132 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHS-----C-CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHhc-----c-cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCHHH
Confidence 99999999999999999998763 1 1233357899999999999999999999987 233568
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD 331 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 331 (377)
+..+|.++..+|++++|+..++++++.. ++... ......+..++...|++++|+..|+++++.. |.
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------p~ 198 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQD-----EDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADKC--------SP 198 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------CC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------CC
Confidence 8899999999999999999999999872 23221 1111112233445589999999999999872 34
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 332 TVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 332 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
...++..+|.++...|++++|...+++++++
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999985
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.75 E-value=2.9e-16 Score=124.53 Aligned_cols=166 Identities=15% Similarity=0.157 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH----------------HHHHHHHhcCHhHHHH
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN----------------LAELYRVKKAFDKAEP 186 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 186 (377)
+..+...|..+...|++++|+..|+++++. +|....++.. +|.++...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788999999999999999999999998 7888888888 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-
Q 017109 187 LYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKE- 265 (377)
Q Consensus 187 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 265 (377)
.|++++++ .|+ ...++..+|.++...|++++|+.+|++++++. |....++.++|.++...|+.
T Consensus 76 ~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK-----APN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--------ADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHhHHH
Confidence 99999998 333 36889999999999999999999999999984 66778999999999877643
Q ss_pred -hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 266 -NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 266 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
..+...+.+++. + .+ ....++.+|.++...|++++|+.+|++++++.
T Consensus 140 ~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 140 KKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344555555432 1 22 22356778999999999999999999999873
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=4.2e-18 Score=127.54 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=122.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.++++++++ .|+ ..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~---~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QER---DP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CH
Confidence 4788889999999999999999854 6788889999999999999999999999999998 333 46
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHH-HHHHHHHHHHcCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEAL-FLESIRILEENGEGD 286 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 286 (377)
.++..+|.++...|++++|+.+|++++++. |....++.++|.++...|++++|... +++++++. |+
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-----P~ 132 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-----PG 132 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-----TT
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-----cC
Confidence 899999999999999999999999999984 66778999999999999999987765 58999872 23
Q ss_pred CHHHHHHHHHHHHHHHHhCC
Q 017109 287 SMTCIRRLRYLAQTYVKANR 306 (377)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~ 306 (377)
+ ..++...+.++..+|+
T Consensus 133 ~---~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 S---PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp C---HHHHHHHHHHHHTCCC
T ss_pred C---HHHHHHHHHHHHHhCc
Confidence 3 3456677888877775
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.74 E-value=9.5e-18 Score=125.59 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=122.5
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.+|++++++. |...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--------p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--------ERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCH
Confidence 4788999999999999999998765 55556788999999999999999999999999984 6778
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHH-HHHHHHHHHhccCCC
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETV-QRKILHIMESSKGWN 328 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 328 (377)
.++..+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|... +++++++.
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~------- 130 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF------- 130 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------
Confidence 89999999999999999999999999997 223345789999999999999887765 58999883
Q ss_pred ChhHHHHHHHHHHHHHHcCC
Q 017109 329 SLDTVIAAEGLALTLQSTGS 348 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~ 348 (377)
|....++...+.++..+|+
T Consensus 131 -P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 -PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp -TTCHHHHHHHHHHHHTCCC
T ss_pred -cCCHHHHHHHHHHHHHhCc
Confidence 4446778888999988875
No 91
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.1e-15 Score=135.54 Aligned_cols=234 Identities=9% Similarity=-0.003 Sum_probs=194.0
Q ss_pred hhcccCCChhhhhhhhhhhhcccccccc----------chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC
Q 017109 90 IESTSQNDTEGENAFGLRKIEDGSVVSN----------IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE 159 (377)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 159 (377)
......|++++|...+.+.+...+..+. .......++..+|.+|...|++++|.+++.+++...... +
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~ 89 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF--A 89 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--C
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--c
Confidence 3456679999999999998876554321 223445678999999999999999999999999987765 3
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+......+...++.++...|++++|+.++++++....+.. +......++..+|.++...|+|++|..++++++.....
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 3334556778899999999999999999999999988763 45566889999999999999999999999999888765
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
. .+.+....++..++.+|...|++++|..++++++.+...... ........+..+|.++...|++++|..++.++++
T Consensus 168 ~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 168 L--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-PTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp S--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred c--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 345778899999999999999999999999999999887652 2344567788999999999999999999999999
Q ss_pred HHHhccCCCCh
Q 017109 320 IMESSKGWNSL 330 (377)
Q Consensus 320 ~~~~~~~~~~~ 330 (377)
...........
T Consensus 245 ~~~~~~~~~~~ 255 (434)
T 4b4t_Q 245 SYHNLTTHNSY 255 (434)
T ss_dssp HHHHTTTSSCH
T ss_pred HhhhhhhhhhH
Confidence 88777655554
No 92
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1.5e-16 Score=134.30 Aligned_cols=223 Identities=9% Similarity=0.042 Sum_probs=175.5
Q ss_pred hhhhhhhhhhccccccccchhhhHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HHHhhCCCCCHhH
Q 017109 100 GENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFL-------QGKL-------AEAEKLFLSALQ-EAKEGFGERDPHV 164 (377)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~~~ 164 (377)
++...+.+++. ..|....++..+|..+.. .|++ ++|+..|+++++ + .|..
T Consensus 34 ~a~~~~~~al~-------~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p~~ 98 (308)
T 2ond_A 34 RVMFAYEQCLL-------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKN 98 (308)
T ss_dssp HHHHHHHHHHH-------HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TTTC
T ss_pred HHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cccc
Confidence 44455555553 345566788888888764 5886 899999999997 4 5677
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..++..+|.++...|++++|...|++++++ .|.++. .++..+|.++...|++++|...|+++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------- 164 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDA------- 164 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------
Confidence 789999999999999999999999999986 344432 278999999999999999999999998763
Q ss_pred ChhHHHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 245 NIDYADTMYHLATVLYL-QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
|....++...+.+... .|++++|...|+++++..+. ...++..++.++...|++++|..+|++++....
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~- 234 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS- 234 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-
Confidence 2224455555555433 79999999999999997432 245678899999999999999999999987410
Q ss_pred ccCCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 324 SKGWNSL-DTVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 324 ~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
-.| .....+..++.++...|+.++|...++++++..++
T Consensus 235 ----l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 235 ----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp ----SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred ----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 012 23678888999999999999999999999997665
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=2.7e-16 Score=124.71 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHH----------------HHHHHHHccCHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHN----------------LGQFYLVQRKLEDACT 228 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 228 (377)
+..+...|..+...|++++|+..|+++++. +|....++.. +|.++...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456778899999999999999999999998 4555667777 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCh-
Q 017109 229 YYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL- 307 (377)
Q Consensus 229 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 307 (377)
.|++++++. |....++..+|.++...|++++|+..|++++++ .|....++.++|.+|...|+.
T Consensus 76 ~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 999999984 667889999999999999999999999999997 223346788999999877654
Q ss_pred -hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 308 -TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 308 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
..+...+++++. + .+ ...++..+|.++...|++++|+.+|++++++.+
T Consensus 140 ~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 140 KKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 344555554431 1 12 234677789999999999999999999998543
No 94
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.72 E-value=4.1e-16 Score=135.97 Aligned_cols=123 Identities=9% Similarity=0.072 Sum_probs=118.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|+|++|+.++++++++.++.+|+++|..+.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++..++++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 256 (377)
|.+|..+|++++|+.++++|+++.....|++||.+..+..+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999988877664
No 95
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=7.4e-17 Score=133.80 Aligned_cols=216 Identities=13% Similarity=-0.039 Sum_probs=165.5
Q ss_pred ccCCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 017109 93 TSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLA 172 (377)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 172 (377)
...|++++|...+.+++... |....++..+|.++...|++++|+.+++++++. .|....++..+|
T Consensus 54 ~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la 118 (275)
T 1xnf_A 54 DSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRG 118 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHH
Confidence 34688899998888888653 234578999999999999999999999999987 566678999999
Q ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 173 ELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
.++...|++++|+.+++++++. .|+.+ .....++ +....|++++|+..+++++... ++.. ..
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~-----~~~~~---~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~ 180 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD-----DPNDP---FRSLWLY-LAEQKLDEKQAKEVLKQHFEKS-----DKEQ----WG 180 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHH-HHHHHHCHHHHHHHHHHHHHHS-----CCCS----TH
T ss_pred HHHHHhccHHHHHHHHHHHHHh-----CCCCh---HHHHHHH-HHHHhcCHHHHHHHHHHHHhcC-----Ccch----HH
Confidence 9999999999999999999987 34443 2222333 4467799999999999998764 2122 12
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
..++.++...++.++|+..+++++...+.. .+....++..+|.++...|++++|+.++++++... +++
T Consensus 181 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--- 248 (275)
T 1xnf_A 181 WNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----VHN--- 248 (275)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CTT---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcccccc----cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----chh---
Confidence 357778888899999999999988754432 23446788999999999999999999999998762 211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELF 356 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~ 356 (377)
+...+.++...|++++|+..+
T Consensus 249 ---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 ---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHHhhHHHH
Confidence 122366778889999988876
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.72 E-value=8e-17 Score=150.34 Aligned_cols=201 Identities=11% Similarity=-0.008 Sum_probs=162.2
Q ss_pred hcccCCChhhhhhhhhhhhccc-cccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 017109 91 ESTSQNDTEGENAFGLRKIEDG-SVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACN 169 (377)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 169 (377)
.....|++++|...+.+++... ......+|....++..+|.++...|++++|+..|+++++. +|....+++
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~ 471 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVW 471 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHH
T ss_pred hcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHH
Confidence 3467899999999988887321 1112244556688999999999999999999999999988 567788999
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA 249 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (377)
++|.++...|++++|+..|++++++ .|++ ..++.++|.++..+|++++ +..|++++++. |...
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--------P~~~ 534 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDT-----FPGE---LAPKLALAATAELAGNTDE-HKFYQTVWSTN--------DGVI 534 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----STTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------CchH
Confidence 9999999999999999999999998 3333 5789999999999999999 99999999984 6677
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHH-HHHHHHHHHHHHhc
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDA-ETVQRKILHIMESS 324 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 324 (377)
.+++++|.++...|++++|+..|++++++ .+....++.++|.++...++.+++ ...++++++.....
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 89999999999999999999999999875 445667789999999887776665 66777777776555
No 97
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.70 E-value=6.9e-16 Score=134.89 Aligned_cols=135 Identities=11% Similarity=0.000 Sum_probs=127.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHH
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIG 207 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 207 (377)
....-+...|++++|+..+++++++.++.++++++..+.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33445667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ 262 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 262 (377)
..++++|.+|..+|++++|+.++++|+++.....|++||.+..++.+|+.+....
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887653
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=6.2e-16 Score=111.81 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=105.7
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
-+|..+..+..+|..++..|++++|+..|++++++ +|....++.++|.++..+|++++|+..+++++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 46788999999999999999999999999999998 7888899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
. |....++.++|.++..+|++++|+..|++++++. |....++..++.++
T Consensus 77 --~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--------P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 --D---SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD--------PSNEEAREGVRNCL 125 (126)
T ss_dssp --C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHC
T ss_pred --h---hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------cCCHHHHHHHHHhc
Confidence 3 3346789999999999999999999999999984 66667777777653
No 99
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.69 E-value=1.3e-15 Score=132.84 Aligned_cols=123 Identities=13% Similarity=0.067 Sum_probs=117.6
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 218 LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
...|+|++|+..+++++++.++..+++||..+.++.++|.+|..+|++++|+.++++++++.++..++++|.++..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHH
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLA 340 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 340 (377)
|.+|..+|++++|+.+|++|+++.+...|++||.+..+..+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999998888776654
No 100
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=3.5e-15 Score=125.93 Aligned_cols=183 Identities=14% Similarity=0.034 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-------hcCH-------hHHHHHHHHHHH-HHHHhcCCCch
Q 017109 140 AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-------KKAF-------DKAEPLYLEAIK-ILQESFGPEDI 204 (377)
Q Consensus 140 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~ 204 (377)
++|+..|++++.. .|....++..+|..+.. .|++ ++|...|+++++ + .|
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK 96 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TT
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cc
Confidence 7899999999987 57778888899888764 5885 899999999998 4 23
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD-TMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
....++..+|.++...|++++|...|++++++. |.... ++..+|.++...|++++|...|+++++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--- 165 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--- 165 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT---
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---
Confidence 335789999999999999999999999999863 33233 789999999999999999999999987522
Q ss_pred CCCCHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVK-ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.. ..++...+.+... .|++++|...|+++++.. |....++..++.++...|++++|...|++++..
T Consensus 166 --~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 166 --TR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp --CC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred --CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22 2334444444333 699999999999999985 333788899999999999999999999999873
No 101
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.67 E-value=2.5e-15 Score=131.34 Aligned_cols=133 Identities=10% Similarity=-0.006 Sum_probs=126.4
Q ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017109 172 AELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADT 251 (377)
Q Consensus 172 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 251 (377)
..-+..+|++++|+..+++++++.++..+++++.++.++.++|.+|..+|+|++|+.++++++++.++..+++||..+..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA 304 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (377)
+++||.+|..+|++++|+.++++++++.+...++++|.+..++.+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887654
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.67 E-value=2e-15 Score=125.89 Aligned_cols=170 Identities=12% Similarity=-0.000 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
.....+..+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++.. .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~ 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----D 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----G
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----h
Confidence 44577899999999999999999999999998 7788899999999999999999999999998775 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
| .........+..+...++.++|+..+++++... |....++.++|.++...|++++|+..++++++..+
T Consensus 182 p---~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 182 Q---DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp C---SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred c---chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 2 334566777778889999999999999999884 77788999999999999999999999999999732
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.. ....++..++.++...|+.++|...|++++..
T Consensus 251 ~~------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 251 TA------ADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp TG------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cc------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 21 12456889999999999999999999998865
No 103
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.65 E-value=5.7e-14 Score=126.50 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHH
Q 017109 166 SACNNLAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ-----RKLEDACTYYERALKI 236 (377)
Q Consensus 166 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~ 236 (377)
.++..+|.+|.. .+++++|+.+|+++.+. .+ ..++..+|.+|... +++++|+.+|+++.+.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-------GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-------TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 344555555555 55555555555555432 11 24566677777666 6777777777776553
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcC---ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhH
Q 017109 237 KGRVLGHGNIDYADTMYHLATVLYLQG---KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTD 309 (377)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 309 (377)
....++.++|.++...| ++++|+.+|+++.+. .+ ..++.++|.+|.. .+++++
T Consensus 326 ----------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 326 ----------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GE---KAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp ----------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ----------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHH
Confidence 12356777888887766 677888888887763 11 3567889999998 899999
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 017109 310 AETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS----TGSLMEAQELFERCLEAR 363 (377)
Q Consensus 310 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 363 (377)
|+.+|+++.+. + + ..++..+|.+|.. .+++++|..+|+++++..
T Consensus 386 A~~~~~~A~~~-----~--~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 386 AAIWMRKAAEQ-----G--L---SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----C--C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999998763 1 1 6788999999998 899999999999999875
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.65 E-value=6.5e-16 Score=119.09 Aligned_cols=166 Identities=13% Similarity=0.028 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
..+..+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++.. .| +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~ 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-D 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-C
Confidence 45778899999999999999999999987 7888899999999999999999999999998775 33 3
Q ss_pred hhHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 204 IRIGVAFHNLGQFY-LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 204 ~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
+ .....++.+. ...+...+|+..++++++.. |....++..+|.++...|++++|+..++++++..+..
T Consensus 73 ~---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 73 N---SYKSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp H---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred h---HHHHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 3 2233334332 23344456899999999874 6677899999999999999999999999998862211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 283 GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....++..+|.++...|+.++|+..|++++..
T Consensus 142 ------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 142 ------QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 12345788999999999999999999998764
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.65 E-value=3.6e-15 Score=107.77 Aligned_cols=102 Identities=14% Similarity=0.201 Sum_probs=94.8
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+|..+..+.++|..++..|++++|+..|++++++ . |....++.++|.++..+|++++|+..+++++++.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--- 77 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----D---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--- 77 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---
Confidence 7999999999999999999999999999999998 3 3346899999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....++.++|.++..+|++++|+..|++++++
T Consensus 78 -----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 78 -----SKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666789999999999999999999999999998
No 106
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=6.8e-14 Score=126.00 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=96.0
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFL----QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
.+++++|..++.++.+.. ...+++.+|.+|.. .+++++|+.+|+++.+. ....++..
T Consensus 56 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~ 116 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----------GLPQAQQN 116 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHH
Confidence 467777777777766431 23577778888887 78888888888887753 13456677
Q ss_pred HHHHHHH----hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcC
Q 017109 171 LAELYRV----KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 171 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
+|.+|.. .+++++|+.+|+++.+. .+ ..++..+|.+|.. .+++++|+.+|+++.+.
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------ 180 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------ 180 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------
Confidence 7777777 67788888888777653 12 3566777777776 66777777777776543
Q ss_pred CCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYL----QGKENDSEALFLESIR 277 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 277 (377)
....++..+|.+|.. .+++++|+.+|+++.+
T Consensus 181 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 181 ----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 113455666666665 5666666666666554
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.64 E-value=1.2e-14 Score=121.16 Aligned_cols=169 Identities=15% Similarity=0.054 Sum_probs=145.0
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
|.....+..+|..+...|++++|+..|+++++. .|++ ..++..+|.++...|++++|+..+++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQD---- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh----
Confidence 455678899999999999999999999999998 3444 5789999999999999999999999987763
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
|.........+..+...++.++|+..+++++.. .|....++.++|.++...|++++|+..|++++...
T Consensus 182 ----p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 182 ----QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp ----CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 444556667777788899999999999999987 23345678899999999999999999999999873
Q ss_pred HhccCCCChhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 322 ESSKGWNSLDT--VIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 322 ~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
|.. ..++..++.++...|+.++|...|++++..
T Consensus 250 --------p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 250 --------LTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp --------TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------cccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 333 678999999999999999999999999874
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=1.4e-14 Score=115.03 Aligned_cols=176 Identities=16% Similarity=0.093 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 017109 141 EAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220 (377)
Q Consensus 141 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 220 (377)
+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+. .+ ..+++++|.+|..
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g~---~~a~~~lg~~y~~- 62 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------GD---GDALALLAQLKIR- 62 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHc-
Confidence 577888888863 34678999999999999999999999999874 23 4789999999998
Q ss_pred c----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 221 R----KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 221 g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
+ ++++|+.+|+++.+. ....+++++|.+|.. .+++++|+.+|+++.+. .+......
T Consensus 63 ~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~ 126 (212)
T 3rjv_A 63 NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVD 126 (212)
T ss_dssp STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHH
Confidence 7 999999999999542 346789999999988 89999999999999864 11124467
Q ss_pred HHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHH
Q 017109 293 RLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST-G-----SLMEAQELFERCLEA 362 (377)
Q Consensus 293 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 362 (377)
++.+||.+|.. .+++++|+.+|+++.+.. .+ ..++..||.+|... | ++++|..+|+++.+.
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS------RT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS------CT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 78999999999 889999999999998651 11 45789999999864 3 899999999999875
No 109
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=2.9e-14 Score=103.19 Aligned_cols=110 Identities=22% Similarity=0.247 Sum_probs=99.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.++.+.++..+|..++..|+|++|+.+|++++++ +|....++.++|.+|..+|++++|+..+++++++....
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 4567788999999999999999999999999998 77888999999999999999999999999999987665
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.......+.++.++|.++..+|++++|+.+|++++...
T Consensus 76 -~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 76 -RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 33456678899999999999999999999999998863
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.63 E-value=7.6e-15 Score=118.99 Aligned_cols=211 Identities=13% Similarity=-0.054 Sum_probs=170.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH-------HHHHHHhcCHhHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNL-------AELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~ 194 (377)
....++..|.-+ ..+++..|.+.|.+++++ +|..+.++..+ +.++...++..+++..+++.+.+
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l 76 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI 76 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566677776 689999999999999998 89999999999 89999999999999999999886
Q ss_pred HHHhcCCCch-------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 195 LQESFGPEDI-------------RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 195 ~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
.....+.... .-..+...++.++...|+|++|.+.|...+.. .|... ..+.+|.++..
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHH
Confidence 4433221111 12456777899999999999999999887653 25555 88999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-HHHHHHHH
Q 017109 262 QGKENDSEALFLESIRILEENGEGDSMT-CIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-TVIAAEGL 339 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l 339 (377)
.+++++|+.+++++... .++. ...+++.+|.++..+|++++|+.+|++++. ++..|. ...+.+.+
T Consensus 148 ~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYL 214 (282)
T ss_dssp TTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHH
Confidence 99999999999866442 1232 345789999999999999999999999873 222133 57889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 340 ALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 340 a~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
|.++..+|+.++|...|++++...
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999853
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.62 E-value=2.5e-15 Score=115.83 Aligned_cols=167 Identities=11% Similarity=-0.033 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
...+..+|..+...|++++|+..++++++. +|....++..+|.++...|++++|+..+++++... +
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p- 71 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-----Q- 71 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----C-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----C-
Confidence 345778999999999999999999999987 34446889999999999999999999999987663 2
Q ss_pred ChhHHHHHHHHHHHH-HHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 245 NIDYADTMYHLATVL-YLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 245 ~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
++ .....++.+. ...++..+|+..++++++. .|....++..+|.++...|++++|+..|+++++..
T Consensus 72 ~~---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-- 138 (176)
T 2r5s_A 72 DN---SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVN-- 138 (176)
T ss_dssp CH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred Ch---HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--
Confidence 22 2333334332 2334455689999999986 22334668899999999999999999999998762
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 324 SKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
++ +....++..++.++...|+.++|...|++++..
T Consensus 139 ---p~-~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 ---LG-AQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ---TT-TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ---cc-cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 11 112458889999999999999999999998864
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.61 E-value=7.7e-15 Score=134.66 Aligned_cols=154 Identities=13% Similarity=0.018 Sum_probs=120.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
.|++++|+..++++++. +|....++..+|.++...|++++|+.+++++++. . +....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----H---PGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----S---TTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHH
Confidence 47899999999999987 6777889999999999999999999999999987 3 333678999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
++..+|++++|+.+++++++.. |....++.++|.++...|++++|+..++++++.. +....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 9999999999999999999984 5567899999999999999999999999999872 22245688
Q ss_pred HHHHHHHHh---CChhHHHHHHHHHHHHH
Q 017109 296 YLAQTYVKA---NRLTDAETVQRKILHIM 321 (377)
Q Consensus 296 ~la~~~~~~---g~~~~A~~~~~~al~~~ 321 (377)
.+|.++... |++++|.+.++++++..
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999999999 99999999999999874
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=4.8e-14 Score=104.85 Aligned_cols=106 Identities=23% Similarity=0.281 Sum_probs=97.5
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
-..+|....+++.+|..+...|++++|+..|++++.+ +|....++.++|.++...|++++|+..|++++++
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l- 99 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL- 99 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-
Confidence 3456778899999999999999999999999999998 7888999999999999999999999999999998
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|++ ..+++++|.++..+|++++|+..|++++++.
T Consensus 100 ----~P~~---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 ----GKND---YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ----SSSC---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4444 4789999999999999999999999999984
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=4.1e-15 Score=110.65 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=94.6
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+|....+++.+|.++...|++++|+..|++++.+ .|+ ...++.++|.++..+|++++|+..|++++.+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--- 100 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--- 100 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 7899999999999999999999999999999998 333 45789999999999999999999999999995
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....+++++|.++...|++++|+..|++++++
T Consensus 101 -----P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 -----KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -----SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566778999999999999999999999999998
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.59 E-value=1.2e-14 Score=133.28 Aligned_cols=156 Identities=10% Similarity=0.012 Sum_probs=120.6
Q ss_pred hcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017109 178 KKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLAT 257 (377)
Q Consensus 178 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (377)
.|++++|+..++++++. .+....++..+|.++...|++++|+.+++++++.. |....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--------PGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------TTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 47899999999999987 23335789999999999999999999999999874 566789999999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHH
Q 017109 258 VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAE 337 (377)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 337 (377)
++...|++++|+.++++++++. +....++.++|.++...|++++|+++++++++.. |....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 9999999999999999999872 2234578899999999999999999999999873 34478899
Q ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHHHh
Q 017109 338 GLALTLQST---GSLMEAQELFERCLEARKK 365 (377)
Q Consensus 338 ~la~~~~~~---g~~~~A~~~~~~al~~~~~ 365 (377)
.++.++... |++++|...++++++..+.
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 999999999 9999999999999986543
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.58 E-value=2.1e-14 Score=122.39 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=122.7
Q ss_pred cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC-------CCHhHHHHHHHHHHHHHHhcCHhHHHHHHH
Q 017109 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE-------RDPHVASACNNLAELYRVKKAFDKAEPLYL 189 (377)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 189 (377)
...|..+.++..+|.++...|++++|+..|++++++....... ..+....++.++|.++...|++++|+.+++
T Consensus 141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567788999999999999999999999999999983211000 012236899999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhH-
Q 017109 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDS- 268 (377)
Q Consensus 190 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A- 268 (377)
+++++ . |....+++++|.++..+|++++|+..|++++++. |....++..++.++...|++++|
T Consensus 221 ~al~~-----~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 221 KALEL-----D---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHH-----C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-----C---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 3 3346789999999999999999999999999984 56677899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 017109 269 EALFLESIRILE 280 (377)
Q Consensus 269 ~~~~~~al~~~~ 280 (377)
...|++++....
T Consensus 285 ~~~~~~~~~~~~ 296 (336)
T 1p5q_A 285 KKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 456777765543
No 117
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.58 E-value=1.7e-13 Score=99.10 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
+..+.++.++|..+...|+|++|+.+|++++++. |....++.++|.++..+|++++|+..+++++++.+...
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 4457789999999999999999999999999984 66688999999999999999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
......+.++.++|.++..+|++++|+++|++++..
T Consensus 77 -~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 77 -ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 235567788999999999999999999999999876
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.58 E-value=6e-15 Score=125.80 Aligned_cols=164 Identities=10% Similarity=0.060 Sum_probs=135.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC-------CchhHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP-------EDIRIG 207 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 207 (377)
..+++++|+..++++++. .|..+.++..+|.++...|++++|+..|++++.+....... ..+...
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 456777888888888776 67889999999999999999999999999999983321000 012236
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.++.++|.++..+|++++|+.++++++++. |....+++++|.++...|++++|+..|++++++. ++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~- 262 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PN- 262 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CC-
Confidence 799999999999999999999999999984 6667899999999999999999999999999972 22
Q ss_pred HHHHHHHHHHHHHHHHhCChhHH-HHHHHHHHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDA-ETVQRKILHIME 322 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~ 322 (377)
...++..++.++..+|++++| ...|++++....
T Consensus 263 --~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 263 --NKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 235688999999999999999 557777776543
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=1.7e-13 Score=100.08 Aligned_cols=131 Identities=28% Similarity=0.529 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
.+++.+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..++++++.. .+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCc
Confidence 46788999999999999999999999986 4556778899999999999999999999999987 3333
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
..++..+|.++...|++++|+.++++++... +....++..+|.++...|++++|..+++++++.
T Consensus 69 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 69 ---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4678899999999999999999999999873 444678889999999999999999999999876
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=1.2e-13 Score=109.59 Aligned_cols=163 Identities=13% Similarity=0.041 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc----CHhHHHHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK----AFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~ 197 (377)
...+++.+|.+|...+++++|+.+|+++.+. ....++.++|.+|.. + ++++|+.+|+++.+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--- 82 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--- 82 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---
Confidence 3578999999999999999999999999864 236789999999998 7 999999999999653
Q ss_pred hcCCCchhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhhHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL----QGKENDSE 269 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 269 (377)
.+ ..++.++|.+|.. .+++++|+.+|+++.+.- + ....+.++++||.+|.. .+++++|+
T Consensus 83 ----g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 83 ----GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-----E-SDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp ----TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-----T-SHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred ----CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-----C-CcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 23 4689999999998 899999999999998752 1 11457899999999999 88999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-C-----ChhHHHHHHHHHHHH
Q 017109 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA-N-----RLTDAETVQRKILHI 320 (377)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 320 (377)
.+|+++.+. +.+. .++.++|.+|... | ++++|+.+|+++.+.
T Consensus 150 ~~~~~A~~~-----~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 150 EYFKGSSSL-----SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHT-----SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999999874 1121 2578999999864 3 899999999999876
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.57 E-value=2.2e-13 Score=103.57 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=120.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
....+..+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---- 76 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---- 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3456788999999999999999999999999987 5666889999999999999999999999999997
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.++ ...++..+|.++...|++++|+.++++++... +.++. ......++..+...|++++|+..+.++..+
T Consensus 77 -~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 77 -DKK---YIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp -CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -Ccc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 333 35789999999999999999999999999884 22221 223355666688899999999999999888
Q ss_pred HHHcC
Q 017109 279 LEENG 283 (377)
Q Consensus 279 ~~~~~ 283 (377)
.....
T Consensus 147 ~~~~~ 151 (166)
T 1a17_A 147 VDSLD 151 (166)
T ss_dssp HHHCC
T ss_pred hcccc
Confidence 77654
No 122
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=2.6e-13 Score=123.44 Aligned_cols=213 Identities=10% Similarity=0.063 Sum_probs=168.7
Q ss_pred hhhhHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhH
Q 017109 119 HTSKWRVFTDSGRDYFL-------QGKLA-------EAEKLFLSALQ-EAKEGFGERDPHVASACNNLAELYRVKKAFDK 183 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 183 (377)
.|....++...|..+.. .|+++ +|+..|+++++ . .|....++..+|.++...|++++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--------~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--------CSSCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHhcCCHHH
Confidence 34556889999999886 79987 88888888885 3 56678899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHc
Q 017109 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV-LYLQ 262 (377)
Q Consensus 184 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~ 262 (377)
|...|++++++ .+.++ ..++..++.++...|++++|...|+++++.. +.....+...+.+ +...
T Consensus 340 A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--------~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 340 VHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--------TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--------CCchHHHHHHHHHHHHHc
Confidence 99999999986 33333 3588999999999999999999999998752 2223334444444 3468
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-HHHHHHHHHH
Q 017109 263 GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-TVIAAEGLAL 341 (377)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~ 341 (377)
|++++|...|+++++..+ ++ ..++..++.++...|+.++|..+|++++... +.+|. ...++.....
T Consensus 405 ~~~~~A~~~~e~al~~~p-----~~---~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-----~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYG-----DI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLA 471 (530)
T ss_dssp CCHHHHHHHHHHHHHHHT-----TC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-----CSCGGGCHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHCC-----CC---HHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-----CCCHHHHHHHHHHHHH
Confidence 999999999999998743 22 3567889999999999999999999998752 22232 3456777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhC
Q 017109 342 TLQSTGSLMEAQELFERCLEARKKLM 367 (377)
Q Consensus 342 ~~~~~g~~~~A~~~~~~al~~~~~~~ 367 (377)
.....|+.+.+..+++++++..++-.
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 88889999999999999999988543
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.5e-13 Score=96.40 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..+..+|..+...|++++|+..|+++++. .|....++.++|.++...|++++|+..+++++++ .
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~ 68 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----D 68 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----C
Confidence 45678999999999999999999999999998 6777899999999999999999999999999998 3
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLY 260 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 260 (377)
|+ ...++..+|.++...|++++|+..+++++++....... |....+...++.+..
T Consensus 69 p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~--p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 69 PN---FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG--SSAREIDQLYYKASQ 123 (126)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHH
T ss_pred CC---cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCc--hhHHHHHHHHHHHHH
Confidence 33 36789999999999999999999999999987443222 445556666665543
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.54 E-value=6.8e-14 Score=104.16 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC
Q 017109 143 EKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK 222 (377)
Q Consensus 143 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 222 (377)
...+++++.+ +|....++..+|.++...|++++|+..|++++.. .|++ ..++..+|.++...|+
T Consensus 7 ~~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~ 70 (148)
T 2vgx_A 7 GGTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYD---SRFFLGLGACRQAMGQ 70 (148)
T ss_dssp CCSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----Cccc---HHHHHHHHHHHHHHhh
Confidence 3456666654 7889999999999999999999999999999987 3333 5788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 223 LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 223 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
+++|+..|++++.+. |....+++++|.++...|++++|+..|++++++.+.
T Consensus 71 ~~~A~~~~~~al~l~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 71 YDLAIHSYSYGAVMD--------IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999984 555678999999999999999999999999998653
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=6.1e-13 Score=97.04 Aligned_cols=131 Identities=25% Similarity=0.433 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.++..+|.++...|++++|+.+++++++. .++. ..++..+|.++...|++++|+.++++++...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence 46788999999999999999999999886 2333 5678899999999999999999999998873
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+....++..+|.++...|++++|+.+++++++..+ .. ..++..+|.++...|++++|..++++++..
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----RS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 44467788999999999999999999999988621 22 345778999999999999999999999875
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=6.2e-13 Score=96.13 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
..+..+..+|..+...|++++|+..|+++++. .|+ ...++.++|.++...|++++|+..+++++++.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----- 68 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKD----- 68 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----
Confidence 45678899999999999999999999999998 333 35899999999999999999999999999984
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYV 302 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 302 (377)
|....++..+|.++...|++++|+..+++++++.+... +.+....+...++.+..
T Consensus 69 ---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 69 ---PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ 123 (126)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence 66678999999999999999999999999999875543 22333444555555543
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=1.2e-12 Score=99.42 Aligned_cols=140 Identities=17% Similarity=0.159 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
..+..+..+|.++...|++++|+.+++++++. .++ ...++..+|.++...|++++|+.++++++...
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 77 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD----- 77 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 45778899999999999999999999999997 233 35789999999999999999999999999884
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIME 322 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 322 (377)
|....++..+|.++...|++++|+.++++++++.+ ... .......++..+...|++++|+..+.++..+..
T Consensus 78 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-----~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 78 ---KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-----HDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 55577899999999999999999999999998732 222 222345566668899999999999999888775
Q ss_pred hc
Q 017109 323 SS 324 (377)
Q Consensus 323 ~~ 324 (377)
..
T Consensus 149 ~~ 150 (166)
T 1a17_A 149 SL 150 (166)
T ss_dssp HC
T ss_pred cc
Confidence 53
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.51 E-value=1.1e-12 Score=95.08 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=110.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..+.....+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 56677889999999999999999999999999987 5566789999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN 266 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (377)
.+++ ..++..+|.++...|++++|+.++++++... |....++..++.++...|+++
T Consensus 76 --~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 --DPAY---SKAYGRMGLALSSLNKHVEAVAYYKKALELD--------PDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp --CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTTCC
T ss_pred --CccC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHHHHhcCC
Confidence 3333 5789999999999999999999999999884 555678889999999988763
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.50 E-value=1.8e-12 Score=96.42 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=94.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|....+++.+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..|++++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--- 84 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--- 84 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 34667788999999999999999999999999988 7778899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|++ ..+++++|.++...|++++|+..|++++++.
T Consensus 85 --~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 --DIXE---PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp --STTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4444 4788999999999999999999999999986
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=6.1e-13 Score=96.95 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=109.1
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 116 SNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
....+.....+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 79 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL- 79 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 3456677899999999999999999999999999976 5666889999999999999999999999999997
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK 264 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 264 (377)
.++ ...++..+|.++...|++++|+.++++++... |....++..++.++..+|+
T Consensus 80 ----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPT---FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHHHHTC
T ss_pred ----CCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhcC
Confidence 333 35789999999999999999999999999884 5666788899999887764
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=4.4e-13 Score=106.51 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
...++.+|..+...|++++|+..|++++. + ...++..+|.++...|++++|+.++++++.. .
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-- 67 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----D-- 67 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C--
Confidence 45578899999999999999999998851 1 3568999999999999999999999999997 2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL--------GHGNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
+....++.++|.++...|++++|+..++++++...... ....+....++.++|.++...|++++|+..+++
T Consensus 68 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 68 -KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33357899999999999999999999999998752210 002245668999999999999999999999999
Q ss_pred HHHH
Q 017109 275 SIRI 278 (377)
Q Consensus 275 al~~ 278 (377)
++++
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9986
No 132
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.48 E-value=1.6e-12 Score=107.84 Aligned_cols=224 Identities=8% Similarity=0.008 Sum_probs=179.9
Q ss_pred cCCCh-hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 017109 94 SQNDT-EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQG--KLAEAEKLFLSALQEAKEGFGERDPHVASACNN 170 (377)
Q Consensus 94 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 170 (377)
..|.+ ++|...+.+++. -.|....+++..+.++...| ++++++.++.+++.. +|....+++.
T Consensus 44 ~~~e~s~~aL~~t~~~L~-------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~ 108 (306)
T 3dra_A 44 KAEEYSERALHITELGIN-------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNY 108 (306)
T ss_dssp HTTCCSHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH-------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHH
Confidence 34455 456666666654 34556689999999999999 999999999999987 7788888888
Q ss_pred HHHHH----HHh---cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHhc
Q 017109 171 LAELY----RVK---KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE--DACTYYERALKIKGRVL 241 (377)
Q Consensus 171 la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~ 241 (377)
.+.++ ... +++++++.++.++++. +|....++...+.+....|.++ ++++++.++++..
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---- 176 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---- 176 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC----
Confidence 88888 666 7899999999999987 3444689999999999999998 9999999999873
Q ss_pred CCCChhHHHHHHHHHHHHHHcCC------hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhH-HHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGK------ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD-AETVQ 314 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~ 314 (377)
+....++...+.+....++ ++++++++.+++.. +|....++..++.++...|+..+ ...++
T Consensus 177 ----~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 177 ----LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp ----TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ----CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 6777899999999998887 89999999999986 23334568889999999998655 44455
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 315 RKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 315 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.++++.. ...+....++..++.++.+.|+.++|+++++.+.+
T Consensus 245 ~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5555431 01234468899999999999999999999999875
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.48 E-value=4.3e-14 Score=117.40 Aligned_cols=195 Identities=18% Similarity=0.084 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+..+..+|..+...|++++|+..|+++++. .|....++.++|.++...|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4578899999999999999999999999988 6677889999999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
.|....+++.+|.++..+|++++|+..+++++++.......-. .. +. .... ..++..... ....
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~--~~-----~~~~---~~~~~~~~~----~~~~ 131 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DD--IP-----SALR---IAKKKRWNS----IEER 131 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SH--HH-----HHHH---HHHHHHHHH----HHHT
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HH--HH-----HHHH---HHHHHHHHH----HHHH
Confidence 3333578999999999999999999999999998743211100 11 11 1111 111111111 1111
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST-GSLMEAQELFERCL 360 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 360 (377)
. .+..+.. ...++.+. .|++++|++.++++++. .|........++.++... +.+++|...|.++.
T Consensus 132 ~-~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 132 R-IHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp C-CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred H-HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 1222222 23344443 68999999999888765 233345555666666655 67888888888776
Q ss_pred H
Q 017109 361 E 361 (377)
Q Consensus 361 ~ 361 (377)
+
T Consensus 198 ~ 198 (281)
T 2c2l_A 198 E 198 (281)
T ss_dssp C
T ss_pred c
Confidence 5
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=1.1e-12 Score=99.54 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=95.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+.+..+..+..+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|+.++++++++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 45567889999999999999999999999999998 6777899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
. +....++.++|.++..+|++++|+.+|++++++.
T Consensus 75 --~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 --D---PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp --C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --C---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3 3336889999999999999999999999999986
No 135
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=2.9e-12 Score=94.06 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC----CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG----ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
.+..+...|..++..|+|++|+..|++++++...... ...|....++.++|.++..+|++++|+..++++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5677889999999999999999999999998533100 001224569999999999999999999999999998666
Q ss_pred hcCCCchhHHHHH----HHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAF----HNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 198 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
. ++-+|....+| +++|.++..+|++++|+..|++++++...
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5 34566677888 99999999999999999999999999744
No 136
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=2.7e-12 Score=114.03 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHh----cCHhHHHHHHHHHHHHHHH
Q 017109 125 VFTDSGRDYFLQG---KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVK----KAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 125 ~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~ 197 (377)
+++.+|.+|...| ++++|+.+|+++.+. .+..+..++++|.+|... +++++|+.+|+++. .
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~--- 245 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P--- 245 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---
Confidence 7899999999999 999999999999976 455667778999999766 79999999999987 1
Q ss_pred hcCCCchhHHHHHHHHHHH-H--HHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-----ChhhHH
Q 017109 198 SFGPEDIRIGVAFHNLGQF-Y--LVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG-----KENDSE 269 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~ 269 (377)
.+ ..+++++|.+ + ...+++++|+.+|+++.+. ....+++++|.+|. .| ++++|+
T Consensus 246 ----g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 246 ----GY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp ----GS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred ----CC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 22 3688999998 4 5689999999999998753 24678999999998 55 999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q 017109 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS 345 (377)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 345 (377)
.+|+++. . .+ ..++.++|.+|.. ..++++|..+|+++.+. .+ ..+...+|.+|..
T Consensus 308 ~~~~~Aa-~-------g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 308 AHFEKAV-G-------RE---VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-------GQ---NSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHTTT-T-------TC---HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-------TC---TTHHHHHHHHHHS
T ss_pred HHHHHHh-C-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-------Ch---HHHHHHHHHHHHh
Confidence 9999987 1 22 3567899998887 34999999999998753 12 5678899999985
Q ss_pred ----cCCHHHHHHHHHHHHH
Q 017109 346 ----TGSLMEAQELFERCLE 361 (377)
Q Consensus 346 ----~g~~~~A~~~~~~al~ 361 (377)
..++++|..+|+++.+
T Consensus 367 G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 5689999999998865
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.46 E-value=2.5e-14 Score=127.69 Aligned_cols=180 Identities=18% Similarity=0.155 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..+..+|..+...|++++|+..|+++++. +|....++.++|.++..+|++++|+.++++++++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 69 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 69 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 44566777888999999999999999999998 6777899999999999999999999999999987
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChhhHHHHHH-----
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV--LYLQGKENDSEALFL----- 273 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~----- 273 (377)
+|....++.++|.+|..+|++++|+..+++++++. |....++..++.+ +..+|++++|+..++
T Consensus 70 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 70 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 33346789999999999999999999999999884 3444566677777 888999999999999
Q ss_pred ------HHHHHHHHcCCCCCHH---HHHHHHHHHHHHHHhCChh--HHHHHHHHHHHHHHhc
Q 017109 274 ------ESIRILEENGEGDSMT---CIRRLRYLAQTYVKANRLT--DAETVQRKILHIMESS 324 (377)
Q Consensus 274 ------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~ 324 (377)
+++.+.+...++..+. .......+...+...+... .+...+.++.++....
T Consensus 140 ~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 140 VDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp TTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred HhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 5555544433332222 2222334444444444444 4455777777776554
No 138
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=3.5e-12 Score=93.67 Aligned_cols=120 Identities=18% Similarity=0.087 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC----CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG----PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
.+..+.+.|..+...|+|++|+..|++++++...... ...+....+|.++|.++..+|++++|+..++++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4667889999999999999999999999999544100 011234569999999999999999999999999998544
Q ss_pred hcCCCChhHHHHH----HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 240 VLGHGNIDYADTM----YHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 240 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
.. +-+|....++ +++|.++..+|++++|+..|++++++.++..+
T Consensus 90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 32 2237778888 99999999999999999999999999887653
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.46 E-value=1.7e-12 Score=95.98 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=94.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..|.....++.+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..|++++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--- 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 44667788999999999999999999999999987 7778899999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.|++ ..++..+|.++...|++++|+..|++++++.
T Consensus 82 --~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 --DINE---PRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp --CTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4444 4688999999999999999999999999986
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.46 E-value=1.7e-13 Score=107.62 Aligned_cols=169 Identities=10% Similarity=0.029 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC---
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN--- 245 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 245 (377)
...+......|+++++.+.+...... .+..+..+..+|..+...|++++|+.+|++++...........
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79 (198)
T ss_dssp --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhH
Confidence 34556666778888888777765543 3445678899999999999999999999999987522100000
Q ss_pred -----hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 246 -----IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 246 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.....++.++|.++...|++++|+.++++++++. +....++..+|.++..+|++++|+.+|++++++
T Consensus 80 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0013789999999999999999999999999872 223467889999999999999999999999988
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ-ELFERCLE 361 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 361 (377)
. |....++..++.++...++..++. ..+...+.
T Consensus 152 ~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 N--------PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S--------TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 444778899999999998888777 44444433
No 141
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=1.9e-12 Score=98.02 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=104.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC---CC-------CHhHHHHHHHHHHHHHHhcCHhHHHHHH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFG---ER-------DPHVASACNNLAELYRVKKAFDKAEPLY 188 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 188 (377)
....+..+...|..++..|++++|+..|.+++.+...... +. .|....++.++|.++...|++++|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3456788999999999999999999999999998654321 11 3556789999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHHcC
Q 017109 189 LEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYA-DTMYHLATVLYLQG 263 (377)
Q Consensus 189 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g 263 (377)
++++.+ +|....+++.+|.++..+|++++|+..|++++.+. |... .+...++.+....+
T Consensus 87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--------PAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHH
Confidence 999998 33446899999999999999999999999999984 5444 44555555554433
No 142
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.9e-12 Score=117.76 Aligned_cols=184 Identities=14% Similarity=0.048 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-------hcCHh-------HHHHHHHHHHH-HHHHhcCCCch
Q 017109 140 AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-------KKAFD-------KAEPLYLEAIK-ILQESFGPEDI 204 (377)
Q Consensus 140 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~ 204 (377)
.+++..|++++.. .|....++..+|..+.. .|+++ +|...++++++ + .|
T Consensus 255 ~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--------~p 318 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK 318 (530)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--------CS
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--------Cc
Confidence 4778899999987 56667889999999886 79987 78888888876 3 23
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
....++..+|.++...|++++|...|++++++. +.++ ..++..++.++...|++++|...|+++++..
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----- 386 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA----- 386 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-----SSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-----
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-----ccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-----
Confidence 335789999999999999999999999999862 2222 3588899999999999999999999998742
Q ss_pred CCCHHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQT-YVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+.. ...+...+.+ +...|++++|..+|+++++.. |....++..++.++...|+.++|..+|++++..
T Consensus 387 ~~~---~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 387 RTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TCC---THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred CCc---hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 111 1223333433 346899999999999999885 333678899999999999999999999999873
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.45 E-value=9.3e-13 Score=103.39 Aligned_cols=134 Identities=19% Similarity=0.112 Sum_probs=110.4
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH----------hHHHHHHHHHHHHHHhcCHhHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP----------HVASACNNLAELYRVKKAFDKAEPL 187 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~ 187 (377)
..+..+..+..+|..+...|++++|+..|++++++.... ++.. ....++.++|.++...|++++|+.+
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456677889999999999999999999999999863221 0000 1247899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhh
Q 017109 188 YLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEND 267 (377)
Q Consensus 188 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (377)
+++++.+ . +....++..+|.++...|++++|+.+|++++.+. |....++..++.++...++..+
T Consensus 111 ~~~al~~-----~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 111 ASKVLKI-----D---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--------PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHH-----S---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHh-----C---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999998 3 3335789999999999999999999999999884 5567788899999998888877
Q ss_pred HH
Q 017109 268 SE 269 (377)
Q Consensus 268 A~ 269 (377)
+.
T Consensus 175 ~~ 176 (198)
T 2fbn_A 175 KD 176 (198)
T ss_dssp --
T ss_pred HH
Confidence 76
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.44 E-value=1.1e-12 Score=104.20 Aligned_cols=140 Identities=17% Similarity=0.141 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
.....++.+|.++...|++++|+..+++++. + . ..++.++|.++...|++++|+.++++++...
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~-~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 67 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD-------P-H---SRICFNIGCMYTILKNMTEAEKAFTRSINRD----- 67 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 3455678999999999999999999998841 1 2 4689999999999999999999999999884
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG--------EGDSMTCIRRLRYLAQTYVKANRLTDAETVQ 314 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (377)
|....++.++|.++...|++++|+..++++++..+... ....+....++.++|.++...|++++|+.++
T Consensus 68 ---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 68 ---KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 55678899999999999999999999999998744321 0012345577899999999999999999999
Q ss_pred HHHHHHH
Q 017109 315 RKILHIM 321 (377)
Q Consensus 315 ~~al~~~ 321 (377)
++++++.
T Consensus 145 ~~al~~~ 151 (213)
T 1hh8_A 145 ALATSMK 151 (213)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 9998763
No 145
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=4.6e-12 Score=112.55 Aligned_cols=191 Identities=14% Similarity=0.015 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---CHhHHHHHHHHHHHHHHHhc
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---AFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 199 (377)
..+++.+|.+|...+.++++........+.... .++. +++.+|.+|...| ++++|+.+|+++.+.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----- 208 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR----- 208 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence 457788899999988777766664444333221 1333 8899999999999 999999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H--HHcCChhhHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQ----RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV-L--YLQGKENDSEALF 272 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~ 272 (377)
++.. +..++++|.+|... +++++|+.+|+++. +....+++++|.+ + ...+++++|+.+|
T Consensus 209 g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 209 GTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp TCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred CCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3322 45668999999765 79999999999986 1235678899998 4 5689999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH--
Q 017109 273 LESIRILEENGEGDSMTCIRRLRYLAQTYVKAN-----RLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-- 345 (377)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-- 345 (377)
+++.+. . ...++.++|.+|. .| ++++|+.+|+++. . ....++..+|.+|..
T Consensus 275 ~~Aa~~-------g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~--------g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 275 DNGRAA-------D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G--------REVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHT-------T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T--------TCHHHHHHHHHHHHTTT
T ss_pred HHHHHC-------C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C--------CCHHHHHHHHHHHHCCC
Confidence 999863 2 2456789999998 66 9999999999887 1 126889999999987
Q ss_pred --cCCHHHHHHHHHHHHH
Q 017109 346 --TGSLMEAQELFERCLE 361 (377)
Q Consensus 346 --~g~~~~A~~~~~~al~ 361 (377)
..++++|..+|+++.+
T Consensus 333 g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TSSCCHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 4599999999999876
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.43 E-value=2e-12 Score=95.51 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=95.1
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+|.....+..+|.++...|++++|+..|++++.. .|++ ..++..+|.++...|++++|+..|++++.+.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 82 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMD--- 82 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---
Confidence 6888999999999999999999999999999987 3333 5789999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|....++.++|.++...|++++|+..+++++++.+.
T Consensus 83 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 83 -----INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp -----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred -----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555678899999999999999999999999998764
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.43 E-value=4.4e-12 Score=91.93 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=106.8
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
..+.....+..+|.++...|++++|+.++++++.. .++. ..++..+|.++...|++++|+.++++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 76 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICID-- 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--
Confidence 35677889999999999999999999999999987 2333 5789999999999999999999999999873
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChh
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLT 308 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (377)
|....++..+|.++...|++++|+.+++++++..+ + ...++..++.++...|+++
T Consensus 77 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~---~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 77 ------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-----D---NETYKSNLKIAELKLREAP 131 (131)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----T---CHHHHHHHHHHHHHHTTCC
T ss_pred ------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-----c---chHHHHHHHHHHHHHhcCC
Confidence 45577899999999999999999999999998722 2 2345788999999888763
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-12 Score=94.05 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=105.6
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 017109 159 ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKG 238 (377)
Q Consensus 159 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 238 (377)
...+....++..+|.++...|++++|+.+++++++. .++ ...++..+|.++...|++++|+.++++++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~- 80 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLE- 80 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 345678899999999999999999999999999986 222 35789999999999999999999999999874
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC
Q 017109 239 RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (377)
+....++..+|.++...|++++|+.+++++++..+ ....++..++.++..+|+
T Consensus 81 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 -------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS--------SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--------GGTHHHHHHHHHHHHHTC
T ss_pred -------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHhcC
Confidence 55677899999999999999999999999998732 233467788888887764
No 149
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.43 E-value=6.7e-14 Score=124.92 Aligned_cols=181 Identities=18% Similarity=0.141 Sum_probs=134.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
+..+..+..+|.++...|++++|+.+|+++++. +|....++.++|.++..+|++++|+..+++++++.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---- 70 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---- 70 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----
Confidence 455667778899999999999999999999998 33346899999999999999999999999999883
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHhCChhHHHHHHH----
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQT--YVKANRLTDAETVQR---- 315 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~---- 315 (377)
|....++.++|.++..+|++++|+..+++++++.+. . ..++..++.+ +..+|++++|++.++
T Consensus 71 ----p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-----~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~ 138 (477)
T 1wao_1 71 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-----D---KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 138 (477)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----C---TTHHHHHHHHHHHHHHHHHCCC------CCS
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 666789999999999999999999999999987322 1 1245566666 888999999999999
Q ss_pred -------HHHHHHHhccCCCChh---HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhh
Q 017109 316 -------KILHIMESSKGWNSLD---TVIAAEGLALTLQSTGSL--MEAQELFERCLEARKKL 366 (377)
Q Consensus 316 -------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~ 366 (377)
+++++.....++..+. .......+...+...+.. ..+...+.++.++..+.
T Consensus 139 ~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 139 VVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp TTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred hHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 6666555554554443 233444555555555554 44555777777776653
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.43 E-value=2.3e-13 Score=121.04 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=128.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC-------CchhHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP-------EDIRIG 207 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 207 (377)
..+++++|+..++.+++. .+..+..+..+|.++...|++++|+..|++++++....... ..+...
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 445677788888777766 67888999999999999999999999999999984332000 012336
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDS 287 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (377)
.++.++|.++..+|++++|+.++++++++. |....+++++|.++..+|++++|+..|++++++ .
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~ 381 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------N 381 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 899999999999999999999999999984 666889999999999999999999999999986 2
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHH-HHHHHH
Q 017109 288 MTCIRRLRYLAQTYVKANRLTDAET-VQRKIL 318 (377)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 318 (377)
|....++..++.++...|++++|.. .+.+++
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344678899999999999988764 344443
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=4.7e-12 Score=92.84 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 199 (377)
+..+..+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 445788999999999999999999999999998 6677889999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
.|+ ...++..+|.++...|++++|+..+++++.+...
T Consensus 73 ~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 DGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred Cch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 333 3578999999999999999999999999998754
No 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.41 E-value=7.5e-13 Score=117.66 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=115.8
Q ss_pred cchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC-------CCHhHHHHHHHHHHHHHHhcCHhHHHHHHH
Q 017109 117 NIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE-------RDPHVASACNNLAELYRVKKAFDKAEPLYL 189 (377)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 189 (377)
...|..+..+..+|..++..|++++|+..|++++++....... ..+....++.++|.+|..+|++++|+.+++
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4567788999999999999999999999999999974221000 012337899999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHH
Q 017109 190 EAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSE 269 (377)
Q Consensus 190 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (377)
+++++ . +....+++++|.+|..+|++++|+..|++++++. |....++..++.++...+++++|.
T Consensus 342 ~al~~-----~---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 342 KALGL-----D---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHH-----S---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-----C---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 3 3336889999999999999999999999999884 666778999999999999998877
Q ss_pred HH-HHHHH
Q 017109 270 AL-FLESI 276 (377)
Q Consensus 270 ~~-~~~al 276 (377)
.. +.+.+
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 53 34333
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.41 E-value=1.9e-12 Score=99.62 Aligned_cols=122 Identities=13% Similarity=0.221 Sum_probs=104.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.. |++ ..++..+
T Consensus 21 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~l 84 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAAL 84 (177)
T ss_dssp C-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHH
Confidence 4578999999999999987 66778899999999999999999999999999982 333 5688999
Q ss_pred HHH-HHHccCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 214 GQF-YLVQRKL--EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 214 a~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
|.+ +...|++ ++|+.++++++... |....++..+|.++...|++++|+..++++++..
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999 8899999 99999999999884 5557789999999999999999999999999873
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.41 E-value=1.1e-11 Score=89.00 Aligned_cols=118 Identities=30% Similarity=0.494 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++.. .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~ 74 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DP 74 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CC
Confidence 3678899999999999999999999999987 4556778999999999999999999999999987 33
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG 263 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (377)
+. ..++..+|.++...|++++|..++++++... |....++..++.++...|
T Consensus 75 ~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 75 NN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHC
T ss_pred cc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhcc
Confidence 33 4678999999999999999999999999874 555677888888877654
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.40 E-value=1.1e-11 Score=93.87 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=96.2
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC---CC-------chhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG---PE-------DIRIGVAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
...+..+...|..++..|++++|+..|.+++.+...... +. .+....++.++|.++..+|++++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 356788999999999999999999999999998655321 11 45567899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 232 RALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
+++.+. |....+++.+|.++...|++++|+..|++++++
T Consensus 88 ~al~~~--------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKRE--------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC--------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 999984 667889999999999999999999999999998
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.40 E-value=1.8e-11 Score=88.67 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..+..+..+|..+...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++...... .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 35678899999999999999999999999987 56667889999999999999999999999999986643 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
++.+....++..+|.++...|++++|+.++++++... + .......++.+...
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--------R-TPDVLKKCQQAEKI 124 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------C-CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------C-CHHHHHHHHHHHHH
Confidence 3344447899999999999999999999999999873 2 13445555555443
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.39 E-value=5e-13 Score=108.36 Aligned_cols=197 Identities=9% Similarity=-0.091 Sum_probs=153.7
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-----
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDS-------GRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP----- 162 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----- 162 (377)
.+++.+|...+.+++. .+|..+++|..+ +.++...++..+++..+++++.+.....+....
T Consensus 19 ~~d~~~A~~~F~~a~~-------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 19 PMSEARSLDLFTEITN-------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT
T ss_pred CCCHHHHHHHHHHHHH-------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc
Confidence 4777777777777765 445677889888 899999999999999999998753332211111
Q ss_pred --------hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017109 163 --------HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERAL 234 (377)
Q Consensus 163 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 234 (377)
....+...++.++...|++++|.+.+...+.. .|... ..+.+|.++...|++++|+.+++++.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 12456677899999999999999999887763 34444 88999999999999999999998664
Q ss_pred HHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHhCChhHHHH
Q 017109 235 KIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMT-CIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
... ++. ...+++++|.++...|++++|+.+|+++.. ++..|. ...+.+.+|.++..+|+.++|..
T Consensus 163 ~~~-------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 163 KWP-------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp GCS-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccC-------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 431 232 245899999999999999999999999873 112133 56678899999999999999999
Q ss_pred HHHHHHHH
Q 017109 313 VQRKILHI 320 (377)
Q Consensus 313 ~~~~al~~ 320 (377)
.|++++..
T Consensus 230 ~l~~a~a~ 237 (282)
T 4f3v_A 230 LLEWLQTT 237 (282)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999987
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.38 E-value=6.6e-12 Score=95.25 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=95.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 160 RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 160 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+.+..+..+..+|.++...|++++|+.+|++++++ . +....++.++|.++...|++++|+.++++++.+.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 75 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----A---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-- 75 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Confidence 45677899999999999999999999999999998 3 3336789999999999999999999999999984
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
|....++.++|.++...|++++|+.+|++++++.+.
T Consensus 76 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 76 ------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred ------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 666789999999999999999999999999998654
No 159
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.38 E-value=8.8e-12 Score=95.83 Aligned_cols=123 Identities=19% Similarity=0.302 Sum_probs=101.9
Q ss_pred HHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017109 175 YRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYH 254 (377)
Q Consensus 175 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (377)
+...|++++|+..++++++. .|+. ..++..+|.++...|++++|+.++++++... |....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH-----CCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 35678999999999999987 3333 5789999999999999999999999999986 455778899
Q ss_pred HHHH-HHHcCCh--hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 255 LATV-LYLQGKE--NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 255 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+|.+ +...|++ ++|+.+++++++.. +....++..+|.++...|++++|+.+++++++..
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999 8899999 99999999999872 2224568899999999999999999999999873
No 160
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.37 E-value=1.7e-11 Score=117.69 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=127.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
....+|+.+|..+...|++++|+..|.++ .....+..+|.++...|++++|++++..+.+..+.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e--- 1166 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--- 1166 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc---
Confidence 34578999999999999999999999775 22456778999999999999999999998876211
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
. .+...+|.+|.+++++++.. .|.+ + +.. ..+..+|..+...|++++|..+|.++-
T Consensus 1167 --~----~Idt~LafaYAKl~rleele-~fI~---------~---~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~---- 1222 (1630)
T 1xi4_A 1167 --S----YVETELIFALAKTNRLAELE-EFIN---------G---PNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS---- 1222 (1630)
T ss_pred --c----cccHHHHHHHHhhcCHHHHH-HHHh---------C---CCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh----
Confidence 1 11223777777777766432 2211 0 222 234457777777777777777777641
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh-----------------ccCCCChhHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES-----------------SKGWNSLDTVIAAEGLALTL 343 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~~~~la~~~ 343 (377)
.|..+|.++..+|++++|++.++++.....- ..+......+..+..++..|
T Consensus 1223 ------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1223 ------------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYY 1290 (1630)
T ss_pred ------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHH
Confidence 2556777777777777777777666432110 00000011234556778888
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 017109 344 QSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 344 ~~~g~~~~A~~~~~~al~~ 362 (377)
...|.+++|+.++++++.+
T Consensus 1291 e~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHcCCHHHHHHHHHHHhcc
Confidence 8999999999999888764
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.37 E-value=6e-11 Score=85.84 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNI 246 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (377)
+++.+|.++...|++++|+..++++++. .|+++....++..+|.++...|++++|+..+++++... ++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence 4678999999999999999999999987 55666666899999999999999999999999999874 4444
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
....++..+|.++...|++++|+..++++++.
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999987
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.37 E-value=3e-11 Score=87.48 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.++.+|..+...|++++|+..++++++.. ++++....++..+|.++...|++++|+.+++++++. .|+++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 46788999999999999999999999862 344555689999999999999999999999999997 55665
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
....++..+|.++..+|++++|+..+++++...
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999999999874
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.36 E-value=3.5e-11 Score=88.12 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=94.8
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+..+..+..+|.++...|++++|+.++++++.. .|+ ...++..+|.++...|++++|+..+++++.+.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--- 73 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD--- 73 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---
Confidence 3456788999999999999999999999999998 333 35789999999999999999999999999984
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
|....++..+|.++...|++++|+..+++++++.+..
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 5667899999999999999999999999999998774
No 164
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.35 E-value=1.8e-10 Score=110.74 Aligned_cols=219 Identities=15% Similarity=0.074 Sum_probs=122.3
Q ss_pred hcccCCChhhhhhhhhhhhccccccccchhhhHHH------------------------HHHHHHHHHHcCCHHHHHHHH
Q 017109 91 ESTSQNDTEGENAFGLRKIEDGSVVSNIHTSKWRV------------------------FTDSGRDYFLQGKLAEAEKLF 146 (377)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~l~~~~~~~g~~~~A~~~~ 146 (377)
.....|.+.++..+..+.+...+.+.+ ++..-.. ...+|.++...|.+++|...|
T Consensus 994 af~~aglp~EaieLLEKivl~~s~fs~-n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IY 1072 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVLDNSVFSE-HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIF 1072 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcccc-cHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHH
Confidence 345689999999988888855432221 1111111 112478888888888888888
Q ss_pred HHHHHHHHhh------CC--------CCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 017109 147 LSALQEAKEG------FG--------ERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHN 212 (377)
Q Consensus 147 ~~al~~~~~~------~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 212 (377)
+++-...... .+ -.......+|..+|.++...|++++|+..|.++ ++ ...+..
T Consensus 1073 kKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA----------dD---~say~e 1139 (1630)
T 1xi4_A 1073 RKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----------DD---PSSYME 1139 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----------CC---hHHHHH
Confidence 8753211000 00 000112334455555555555555555555443 01 134444
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 213 LGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 213 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
+|.++...|++++|+++|..+.+..+ . ..+...+|.+|.+.+++++ ++.|. + . +.. .
T Consensus 1140 Va~~~~~lGkyEEAIeyL~mArk~~~-------e--~~Idt~LafaYAKl~rlee-le~fI---~------~---~n~-a 1196 (1630)
T 1xi4_A 1140 VVQAANTSGNWEELVKYLQMARKKAR-------E--SYVETELIFALAKTNRLAE-LEEFI---N------G---PNN-A 1196 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcc-------c--ccccHHHHHHHHhhcCHHH-HHHHH---h------C---CCH-H
Confidence 55555555555555555555444320 0 0111124555555555442 22111 0 0 111 2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.+..+|..+...|++++|..+|.++ ..+..++.++...|++++|++.++++...
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 3557999999999999999999884 35677899999999999999999888543
No 165
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.35 E-value=1.4e-11 Score=106.06 Aligned_cols=136 Identities=17% Similarity=0.096 Sum_probs=114.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC--------CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGF--------GERDPHVASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
....+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.++..+|++++|+.++++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345677899999999999999999999999998654310 002567789999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHH
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEA 270 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (377)
++++ .+....+++.+|.+|..+|++++|+..+++++++. |....++..++.++...++++++..
T Consensus 299 al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 299 ALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 33346889999999999999999999999999984 5556788889999988888777654
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.34 E-value=2.9e-11 Score=85.76 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+..+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----Cc
Confidence 3577899999999999999999999999987 5666789999999999999999999999999987 33
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
++ ..++..+|.++...|++++|..+++++++.. |....++..++.+.
T Consensus 70 ~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 DW---GKGYSRKAAALEFLNRFEEAKRTYEEGLKHE--------ANNPQLKEGLQNME 116 (118)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHH
T ss_pred cc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHhh
Confidence 33 5789999999999999999999999998763 44455666666553
No 167
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.34 E-value=3.5e-11 Score=86.24 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
...++..+|.++...|++++|+.++++++.. .++. ..++..+|.++...|++++|+.++++++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------ 73 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------ 73 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence 4778899999999999999999999999987 2333 4688999999999999999999999998873
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhC
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKAN 305 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (377)
+....++..+|.++...|++++|+.+++++++.. ++ ...++..++.++...|
T Consensus 74 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 74 --PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PN---NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHC
T ss_pred --CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC---cHHHHHHHHHHHHhcc
Confidence 4456788999999999999999999999999862 12 2345677788776654
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.34 E-value=1.2e-11 Score=88.40 Aligned_cols=97 Identities=18% Similarity=0.062 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.++.+|..+...|++++|+..++++++. +|....++..+|.++...|++++|+..+++++++ .|++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~- 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKD- 84 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-
Confidence 3678899999999999999999999998 7888999999999999999999999999999998 3433
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
..++..+|.++...|++++|+..++++++..
T Consensus 85 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 85 --IAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999998874
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.30 E-value=8.6e-11 Score=84.99 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
..+..+..+|.++...|++++|+.++++++.. .++. ..++..+|.++...|++++|+.++++++...... .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 34678899999999999999999999999987 3333 5788999999999999999999999999987432 1
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.+.+....++..+|.++...|++++|+.+++++++.
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 222333788999999999999999999999999986
No 170
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=1.7e-10 Score=94.82 Aligned_cols=180 Identities=10% Similarity=0.026 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
..++..+|.++...|++++|+.++.+.+.. ++ ......++..++.++..+|+.+.|.+.+++..+..
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~------- 166 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI------- 166 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 344579999999999999999999998764 22 13567889999999999999999999999987763
Q ss_pred Ch------hHHHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 017109 245 NI------DYADTMYHLATVLYLQG--KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRK 316 (377)
Q Consensus 245 ~~------~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (377)
+ +.......-+++....| ++.+|...|+++.+.. ++ ......+.+ ++..+|++++|...++.
T Consensus 167 -~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-----p~-~~~~~lLln---~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 167 -EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-----PT-WKTQLGLLN---LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-----CS-HHHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred -ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-----CC-cccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 3 22233333355566656 9999999999975431 11 112222333 89999999999999997
Q ss_pred HHHHHHhccCCC--ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 017109 317 ILHIMESSKGWN--SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 317 al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 374 (377)
+++........+ .|..+.++.+++.+....|+ +|.++++++.+ ..|+||.+
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~hp~i 289 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-----LDHEHAFI 289 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH-----TTCCCHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH-----hCCCChHH
Confidence 776643211100 13457888888888888897 88888888887 66777754
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=5.8e-11 Score=102.26 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF--------GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
.+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 456788999999999999999999999999655420 002556678999999999999999999999999998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 236 IKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
+. |....+++.+|.++...|++++|+..+++++++.+ + ...++..++.++...++.+++.+
T Consensus 302 ~~--------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-----~---~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 ID--------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-----E---DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC--------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 73 66688999999999999999999999999998722 2 23456788888888888877654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=1.7e-11 Score=87.59 Aligned_cols=99 Identities=11% Similarity=-0.094 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
..++.+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------- 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------- 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 45688999999999999999999999998 33346889999999999999999999999999984
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
|....++..+|.++...|++++|+..+++++++.+
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 66678999999999999999999999999998643
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=4.2e-11 Score=88.86 Aligned_cols=121 Identities=19% Similarity=0.101 Sum_probs=99.0
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
..+..+..+..+|..+...|++++|+..|+++++.. ++++....++..+|.++...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 94 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--- 94 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 344567889999999999999999999999999751 222334889999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
.+++ ..++..+|.++...|++++|+.++++++... |....++..++.+.
T Consensus 95 --~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 95 --DGGD---VKALYRRSQALEKLGRLDQAVLDLQRCVSLE--------PKNKVFQEALRNIS 143 (148)
T ss_dssp --TSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHH
T ss_pred --CccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHH
Confidence 3333 5788999999999999999999999999884 44445555555554
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.29 E-value=6.4e-12 Score=107.12 Aligned_cols=140 Identities=14% Similarity=0.038 Sum_probs=89.7
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHH-----------------HHHHHHHHHHHHhcC
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVA-----------------SACNNLAELYRVKKA 180 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~ 180 (377)
..+..+..+..+|..++..|++++|+..|++++.. .+... .++.++|.++..+|+
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44667888999999999999999999999999987 23322 488999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H
Q 017109 181 FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV-L 259 (377)
Q Consensus 181 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~ 259 (377)
+++|+.++++++++ . +....+++++|.+|..+|++++|+..|++++++. |....++..++.+ .
T Consensus 246 ~~~A~~~~~~al~~-----~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 246 YDEAIGHCNIVLTE-----E---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAE 309 (338)
T ss_dssp CHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHH
Confidence 99999999999997 3 3336789999999999999999999999999885 5556777888887 4
Q ss_pred HHcCChhhHHHHHHHHHHHHHH
Q 017109 260 YLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~ 281 (377)
...+..+++...|.+++...+.
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCC
Confidence 4566778888899988876443
No 175
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.27 E-value=7.7e-10 Score=91.82 Aligned_cols=185 Identities=5% Similarity=-0.138 Sum_probs=152.6
Q ss_pred HHcCC-HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc--CHhHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 017109 134 FLQGK-LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK--AFDKAEPLYLEAIKILQESFGPEDIRIGVAF 210 (377)
Q Consensus 134 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 210 (377)
...|. .++|+..+.+++.+ +|....+++..+.+....| ++++++..+.+++.. +|....++
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW 106 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIW 106 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHH
Confidence 34444 46899999999998 8899999999999999999 999999999999987 33335788
Q ss_pred HHHHHHH----HHc---cCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh--hHHHHHHHHHHHHHH
Q 017109 211 HNLGQFY----LVQ---RKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN--DSEALFLESIRILEE 281 (377)
Q Consensus 211 ~~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 281 (377)
+..+.++ ... +++++++.++.++++.. |....++...+.+....|+++ ++++++.++++.
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--- 175 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--- 175 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---
Confidence 8888888 666 78999999999999874 777889999999999999999 999999999986
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhCC------hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHH-HH
Q 017109 282 NGEGDSMTCIRRLRYLAQTYVKANR------LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEA-QE 354 (377)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~ 354 (377)
++....++...+.+....|+ ++++++++++++.. +|....++..++.++...|+..++ ..
T Consensus 176 -----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 176 -----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp -----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred -----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 23334568888888888887 89999999999987 355578888999999988885443 33
Q ss_pred HHHH
Q 017109 355 LFER 358 (377)
Q Consensus 355 ~~~~ 358 (377)
+.++
T Consensus 243 ~~~~ 246 (306)
T 3dra_A 243 FSLQ 246 (306)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7e-11 Score=87.61 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=93.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+.....+..+|..+...|++++|+.+++++++. .++++....++..+|.++...|++++|+.++++++...
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 95 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--- 95 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 3456788999999999999999999999999986 44454457899999999999999999999999999884
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 241 LGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....++..+|.++...|++++|+.++++++++
T Consensus 96 -----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 96 -----GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 455788999999999999999999999999987
No 177
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.24 E-value=2.1e-10 Score=81.18 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+..+..+|.++...|++++|+..+++++.. .|++ ..++..+|.++...|++++|+..+++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------ 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------
Confidence 3567889999999999999999999999987 3333 5789999999999999999999999999884
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
|....++..+|.++...|++++|..+++++++.
T Consensus 69 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 69 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 555778999999999999999999999999875
No 178
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.24 E-value=5e-12 Score=108.55 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
.+..++..+...|++++|+.+++.+++. .+. +.+...++.+|...|++.++.++++. |+
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~--------~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn-- 121 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKK--------ARE-SYVETELIFALAKTNRLAELEEFING----------PN-- 121 (449)
T ss_dssp -------------------------------------------------------CHHHHTTTTTC----------C---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh--------Ccc-chhHHHHHHHHHHhCCHHHHHHHHcC----------Cc--
Confidence 3444445555555555555555555432 111 23334444555555555554444321 11
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
..++..+|..+...|+|++|..+|.++ ..+..+|.++...|++++|++.++++.
T Consensus 122 --~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------- 175 (449)
T 1b89_A 122 --NAHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN-------- 175 (449)
T ss_dssp -----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC--------
Confidence 125555555555555555555555543 124455555555555555555555551
Q ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
. ..+|...+.++...|+++.|..+..... .+|+. ...++.+|.+.|++++|+.++++++.
T Consensus 176 --~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 176 --S---TRTWKEVCFACVDGKEFRLAQMCGLHIV---------VHADE---LEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp --C---HHHHHHHHHHHHHTTCHHHHHHTTTTTT---------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred --C---chhHHHHHHHHHHcCcHHHHHHHHHHHH---------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 0 1234444555555555555533333200 12221 22455666666666666666666654
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.23 E-value=5.3e-11 Score=84.56 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=75.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 017109 135 LQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLG 214 (377)
Q Consensus 135 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 214 (377)
..|++++|+..|+++++. +.++|....++..+|.++...|++++|+.+++++++. .|++ ..++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNH---QALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---hHHHHHHH
Confidence 468999999999999974 1224888999999999999999999999999999998 3444 57899999
Q ss_pred HHHHHccCHHHHHHHHHHHHHHH
Q 017109 215 QFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.++...|++++|+..+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999885
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.23 E-value=1.1e-09 Score=91.53 Aligned_cols=223 Identities=6% Similarity=-0.055 Sum_probs=165.5
Q ss_pred CCChh-hhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhhCCCCCHh
Q 017109 95 QNDTE-GENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGK----------LAEAEKLFLSALQEAKEGFGERDPH 163 (377)
Q Consensus 95 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~ 163 (377)
.|++. +|...+..++. .+|....+++..+.++...|. +++++.++..++.. +|.
T Consensus 42 ~~e~s~eaL~~t~~~L~-------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PK 106 (331)
T 3dss_A 42 AGELDESVLELTSQILG-------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPK 106 (331)
T ss_dssp TTCCSHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTT
T ss_pred cCCCCHHHHHHHHHHHH-------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCC
Confidence 45554 45555555553 345566888888888877765 67888888888877 788
Q ss_pred HHHHHHHHHHHHHHhcC--HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHh
Q 017109 164 VASACNNLAELYRVKKA--FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK-LEDACTYYERALKIKGRV 240 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~ 240 (377)
...++...+.+....|+ +++++.++.++++. ++....++...+.+....|. ++++++++.++++..
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--- 175 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--- 175 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---
Confidence 89999999999999994 89999999999997 44446889999999999998 699999999999873
Q ss_pred cCCCChhHHHHHHHHHHHHHHc--------------CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh--
Q 017109 241 LGHGNIDYADTMYHLATVLYLQ--------------GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKA-- 304 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 304 (377)
|....+++..+.++... +.++++++++.+++...+ ....+++.+..++...
T Consensus 176 -----p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P--------~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 176 -----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--------NDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp -----SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHSSSC
T ss_pred -----CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhccC
Confidence 77778899999888876 457899999999998722 2233454444444333
Q ss_pred ---------CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHH
Q 017109 305 ---------NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ---STGSLMEAQELFERCLEARK 364 (377)
Q Consensus 305 ---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~ 364 (377)
+.++++++++++++++. |+...++..++.+.. ..|..++...++.+.+++.+
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~--------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhC--------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 45778888888888874 333444444444332 46778889999998887643
No 181
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.22 E-value=1.6e-11 Score=101.91 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+..+..+|..+...|++++|+..|++++.. .|+ ...++.++|.++..+|++++|+..+++++++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------ 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD------ 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------
Confidence 3567899999999999999999999999997 333 35789999999999999999999999999873
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
|....+++.+|.++...|++++|+..+++++++.+...
T Consensus 69 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 69 --GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 66678999999999999999999999999999987653
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.21 E-value=2.6e-11 Score=103.32 Aligned_cols=145 Identities=13% Similarity=0.055 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCC--------hhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG-HGN--------IDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
..+..+..+|..+...|++++|+..|++++........ ... .....++.++|.++...|++++|+.+++++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34667889999999999999999999999987521100 000 000148899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH-HHHcCCHHHHHH
Q 017109 276 IRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALT-LQSTGSLMEAQE 354 (377)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~ 354 (377)
+++. +....+++++|.+|..+|++++|+..|++++++. |....++..++.+ ....+..+++..
T Consensus 257 l~~~--------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 257 LTEE--------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9872 2335678999999999999999999999998874 3346677778887 445677788889
Q ss_pred HHHHHHHHHHh
Q 017109 355 LFERCLEARKK 365 (377)
Q Consensus 355 ~~~~al~~~~~ 365 (377)
.|.+++...+.
T Consensus 321 ~~~~~l~~~p~ 331 (338)
T 2if4_A 321 MYKGIFKGKDE 331 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCCCC
Confidence 99998875443
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.20 E-value=2e-09 Score=89.88 Aligned_cols=192 Identities=11% Similarity=-0.012 Sum_probs=150.8
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC----------HhHHHHHHHHHHHHHHHhcCC
Q 017109 133 YFLQGKLA-EAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA----------FDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 133 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 201 (377)
....|+++ +|+..+.+++.+ +|....+++..+.+....+. +++++.++..++..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~------- 103 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------- 103 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-------
Confidence 34567776 799999999977 78888899999998887776 57788888888776
Q ss_pred CchhHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRK--LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGK-ENDSEALFLESIRI 278 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 278 (377)
+|....++...+.++...|+ +++++.++.++++.. |....++...+.+....|. ++++++++.++++.
T Consensus 104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 34446899999999999994 899999999999873 7778899999999999998 59999999999986
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHh--------------CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKA--------------NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ 344 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 344 (377)
++....++...+.++... +.++++++++.+++... |....++..+.-++.
T Consensus 175 --------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--------P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 175 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLG 238 (331)
T ss_dssp --------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Confidence 233345677888888776 56889999999999873 444666765554554
Q ss_pred Hc-----------CCHHHHHHHHHHHHHHHH
Q 017109 345 ST-----------GSLMEAQELFERCLEARK 364 (377)
Q Consensus 345 ~~-----------g~~~~A~~~~~~al~~~~ 364 (377)
.. +.++++++++++++++.+
T Consensus 239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 239 AGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 44 356788888888887543
No 184
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=1e-09 Score=90.30 Aligned_cols=180 Identities=6% Similarity=-0.023 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC-
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE- 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 202 (377)
..+..+|.++...|++++|+.++.+++.. ...+....++..++.++..+|+.+.|.+.+++..+. .++
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~ 169 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDN------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDT 169 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cccc
Confidence 34568999999999999999999999753 111478889999999999999999999999998776 221
Q ss_pred --chhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 203 --DIRIGVAFHNLGQFYLVQR--KLEDACTYYERALKIKGRVLGHGNID--YADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 203 --~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
......+...-|.+....| ++.+|..+|+++.+.. |. ....+.+ ++..+|++++|...++.++
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------PTWKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------CCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 0122334444455566666 9999999999975542 32 2233333 8999999999999999887
Q ss_pred HHHHHcCCCC--CHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhH
Q 017109 277 RILEENGEGD--SMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDT 332 (377)
Q Consensus 277 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 332 (377)
+..+.....+ .+....++.+++.+...+|+ +|.+++.++.+. .++||..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-----~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL-----DHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-----TCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-----CCCChHH
Confidence 7765532110 12345667788888888897 888888888766 3556643
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.19 E-value=4.2e-11 Score=84.09 Aligned_cols=100 Identities=16% Similarity=0.021 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
..++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++. .++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~ 72 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IED 72 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----Ccc
Confidence 456788999999999999999999999987 5566788999999999999999999999999987 333
Q ss_pred chhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQ-RKLEDACTYYERALKI 236 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 236 (377)
.....++..+|.++... |++++|+.++++++..
T Consensus 73 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 73 -EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp -TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred -cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 11357899999999999 9999999999998765
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=8.5e-11 Score=83.48 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=76.8
Q ss_pred HhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017109 177 VKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLA 256 (377)
Q Consensus 177 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 256 (377)
.+|++++|+.+|+++++. ++++|....++.++|.++..+|++++|+.+++++++.. |....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHH
Confidence 468999999999999986 33357778999999999999999999999999999984 56678999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHH
Q 017109 257 TVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
.++...|++++|+..+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999874
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.16 E-value=2.1e-11 Score=104.74 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
.+|..+|..+...|++++|++.|.++- ....+..++..+...|++++|+.+++.+.+..+ +
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~------~ 93 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR------E 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc------c
Confidence 589999999999999999999997642 123667788888999999999999998887411 1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (377)
..+...++.+|.+.|+++++.++++. |. ..++..+|..+...|++++|..+|.++
T Consensus 94 ---~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 94 ---SYVETELIFALAKTNRLAELEEFING-------------PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp ------------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT--------
T ss_pred ---chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 35677899999999999999877742 22 238999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 017109 284 EGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQ 353 (377)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 353 (377)
..+..+|.++..+|++++|++.++++. + +.++...+.++...|+++.|.
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHH
Confidence 127889999999999999999999981 1 577888889999999888886
No 188
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.15 E-value=5.7e-11 Score=83.38 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 163 HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
....++..+|.++...|++++|+.+++++++. .+.. ..++..+|.++...|++++|+.+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 70 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVI----- 70 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence 34567788999999999999999999999987 3333 4688999999999999999999999999874
Q ss_pred CCChh--HHHHHHHHHHHHHHc-CChhhHHHHHHHHHHH
Q 017109 243 HGNID--YADTMYHLATVLYLQ-GKENDSEALFLESIRI 278 (377)
Q Consensus 243 ~~~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 278 (377)
+. ...++..+|.++... |++++|+.++++++..
T Consensus 71 ---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 ---EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ---CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ---cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 44 577899999999999 9999999999998865
No 189
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.14 E-value=2.5e-09 Score=89.68 Aligned_cols=224 Identities=11% Similarity=-0.017 Sum_probs=166.5
Q ss_pred hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH
Q 017109 99 EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQG-KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV 177 (377)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 177 (377)
++|...+.+++. .+|....+++..+.++...| .+++++.++.+++.. +|....++...+.++..
T Consensus 71 e~AL~lt~~~L~-------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 71 ERALELTEIIVR-------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHH
Confidence 455666665554 34556688999999999999 599999999999976 78888999999999998
Q ss_pred h-c-CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHHHHHhcCCCChh
Q 017109 178 K-K-AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE--------DACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 178 ~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
. + +++++++++.++++. ++....++...+.+....|.++ ++++++.++++.. +.
T Consensus 136 l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--------p~ 199 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--------GR 199 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------TT
T ss_pred hcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------CC
Confidence 8 7 889999999998875 4444678999999999888887 9999999998873 77
Q ss_pred HHHHHHHHHHHHHHcCC-------hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhH-----------
Q 017109 248 YADTMYHLATVLYLQGK-------ENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTD----------- 309 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----------- 309 (377)
...+++..+.++...++ ++++++++.+++.+ .|....++..+..++...|+...
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 78899999999999887 68899999998886 22334557777778877776511
Q ss_pred -HHH-HHHHHHHHHHhccCC-----CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 310 -AET-VQRKILHIMESSKGW-----NSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 310 -A~~-~~~~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.+. .+....+.+....+. ..+....++..++.+|...|+.++|.++++...+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 000 011222222222221 1134577899999999999999999999988654
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=1.3e-09 Score=99.03 Aligned_cols=179 Identities=11% Similarity=-0.025 Sum_probs=149.9
Q ss_pred HHHcCCH-HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcC----------HhHHHHHHHHHHHHHHHhcCC
Q 017109 133 YFLQGKL-AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA----------FDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 133 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 201 (377)
....|++ ++|+..+.+++.. +|....+++..+.++...|+ ++++++.+.++++.
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~------- 102 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------- 102 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-------
Confidence 3445544 5789999999998 88999999999999999998 99999999999987
Q ss_pred CchhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQR--KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG-KENDSEALFLESIRI 278 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 278 (377)
+|....+|...+.++...| +++++++++.++++.. +....++...+.+....| .++++++++.++++.
T Consensus 103 -~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 103 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp -CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred -CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4444689999999999999 7799999999999984 677889999999999999 899999999999875
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHh--------------CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKA--------------NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQ 344 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 344 (377)
++....+|...+.++... +.+++|++++.+++.+. |....++..++.++.
T Consensus 174 --------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~--------P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 174 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLG 237 (567)
T ss_dssp --------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC--------SSCSHHHHHHHHHHS
T ss_pred --------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC--------CCCccHHHHHHHHHh
Confidence 333446788888888875 56789999999999873 444678888888988
Q ss_pred HcCCHHH
Q 017109 345 STGSLME 351 (377)
Q Consensus 345 ~~g~~~~ 351 (377)
..+++++
T Consensus 238 ~~~~~~~ 244 (567)
T 1dce_A 238 RAEPHDV 244 (567)
T ss_dssp CCCCCSC
T ss_pred cCCCccc
Confidence 8887554
No 191
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.09 E-value=5.4e-09 Score=87.71 Aligned_cols=189 Identities=12% Similarity=-0.067 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHHhc
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK-AFDKAEPLYLEAIKILQESF 199 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 199 (377)
....++..+..+....+..++|+..+.+++.+ +|....+++..+.+....| .+++++..+.+++..
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----- 118 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----- 118 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----
Confidence 34455666666666677778999999999998 8888999999999999999 599999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh--------hHH
Q 017109 200 GPEDIRIGVAFHNLGQFYLVQ-R-KLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN--------DSE 269 (377)
Q Consensus 200 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~ 269 (377)
+|....+++..+.++... + ++++++.++.++++. ++....++...+.+....|.++ +++
T Consensus 119 ---nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 119 ---NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp ---TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 344468899999999988 7 899999999998865 3667789999999999888888 899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC-------hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 017109 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR-------LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALT 342 (377)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 342 (377)
+++.++++. ++....++...+.+....++ ++++++++++++.+ +|....++..+..+
T Consensus 188 e~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 188 DWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGF 251 (349)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 999999886 23344678889999888887 68899999999887 35557788888888
Q ss_pred HHHcCCH
Q 017109 343 LQSTGSL 349 (377)
Q Consensus 343 ~~~~g~~ 349 (377)
+...|+.
T Consensus 252 l~~~~~~ 258 (349)
T 3q7a_A 252 LKHFSLP 258 (349)
T ss_dssp HHHTTCC
T ss_pred HHhcCCC
Confidence 8877764
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.08 E-value=5.3e-10 Score=81.89 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=78.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHh----------HHHHHHHHHHHHHHHhcCCCc
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFD----------KAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~ 203 (377)
.+.+.+++|+..+++++++ +|..+.++.++|.++...++++ +|+..|++++++ +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 3557889999999999998 8889999999999999998864 999999999998 4
Q ss_pred hhHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHH
Q 017109 204 IRIGVAFHNLGQFYLVQR-----------KLEDACTYYERALKIK 237 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~ 237 (377)
|....+++++|.+|..+| ++++|+.+|++|+++.
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 445689999999999885 8999999999999994
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.02 E-value=4.3e-09 Score=70.59 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.+....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3456788999999999999999999999999987 5666788999999999999999999999999997
Q ss_pred cCCCchhHHHHHHHHHHHHHHcc
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQR 221 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g 221 (377)
.|++ ..++.++|.++...|
T Consensus 73 -~p~~---~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -DPNN---AEAKQNLGNAKQKQG 91 (91)
T ss_dssp -CTTC---HHHHHHHHHHHHHHC
T ss_pred -CCCC---HHHHHHHHHHHHhcC
Confidence 3333 567888998887654
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.8e-10 Score=79.82 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
.+..+..+|..+...|++++|+..|+++++. .|....++.++|.++...|++++|+..+++++++ .|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CC
Confidence 3577899999999999999999999999998 6677889999999999999999999999999987 33
Q ss_pred Cc---hhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 017109 202 ED---IRIGVAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 202 ~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
++ .....++..+|.++...|++++|+..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 70 TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 32 2236788899999999998877765544
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.97 E-value=6.5e-09 Score=69.69 Aligned_cols=87 Identities=29% Similarity=0.468 Sum_probs=74.3
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
.+....++..+|.++...|++++|+.+++++++. .++. ..++..+|.++...|++++|+.+++++++..
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 73 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--- 73 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---
Confidence 3456788999999999999999999999999987 3333 5789999999999999999999999999884
Q ss_pred cCCCChhHHHHHHHHHHHHHHcC
Q 017109 241 LGHGNIDYADTMYHLATVLYLQG 263 (377)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g 263 (377)
|....++.++|.++...|
T Consensus 74 -----p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 -----PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----TTCHHHHHHHHHHHHHHC
T ss_pred -----CCCHHHHHHHHHHHHhcC
Confidence 555778889999887654
No 196
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.97 E-value=6.8e-08 Score=89.13 Aligned_cols=217 Identities=11% Similarity=0.086 Sum_probs=163.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 120 TSKWRVFTDSGRDYFLQGKLAEAE-KLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
|....+|...+......|+.++|. ..|++|+.. .|.....+...+......|++++|...|++++......
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 344678888899999999999997 999999976 45556778889999999999999999999999864211
Q ss_pred c------CCCc--------hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-
Q 017109 199 F------GPED--------IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG- 263 (377)
Q Consensus 199 ~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g- 263 (377)
. .|.. .....++...+....+.|..+.|...|.+|++... +....++...+.+....+
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-------~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-------LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-------GSCTHHHHHHHHHHHTTTS
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHhCC
Confidence 0 0110 12345778888888889999999999999987621 112344556666666655
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHH
Q 017109 264 KENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTL 343 (377)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 343 (377)
+++.|...|+++++.++. .+. .+...+......|+.+.|..+|++++..... .......+......-
T Consensus 485 d~e~Ar~ife~~Lk~~p~-----~~~---~w~~y~~fe~~~~~~~~AR~lferal~~~~~-----~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFAT-----DGE---YINKYLDFLIYVNEESQVKSLFESSIDKISD-----SHLLKMIFQKVIFFE 551 (679)
T ss_dssp CCHHHHHHHHHHHHHHTT-----CHH---HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS-----TTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC-----chH---HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHH
Confidence 489999999999997542 232 3456677778889999999999999875321 113467788888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHH
Q 017109 344 QSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 344 ~~~g~~~~A~~~~~~al~~~~ 364 (377)
...|+.+.+....+++.+..+
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHST
T ss_pred HHcCCHHHHHHHHHHHHHhCC
Confidence 899999999999999988654
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=4.2e-10 Score=78.87 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
.+.++..+|.++...|++++|+..++++++. .|++ ..++.++|.++..+|++++|+..+++++++.... .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA--E 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST--T
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--c
Confidence 3567899999999999999999999999998 3333 5789999999999999999999999999874110 0
Q ss_pred CChhHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 017109 244 GNIDYADTMYHLATVLYLQGKENDSEALFLE 274 (377)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (377)
+......++..+|.++...|++++|+..+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 0011377889999999999998888765543
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.96 E-value=3e-09 Score=77.87 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=76.2
Q ss_pred HHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHHhcCCCC
Q 017109 176 RVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKL----------EDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 176 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 245 (377)
.+.+.|++|+..+++++++ +|....++.++|.++...+++ ++|+..|++++++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------- 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------
Confidence 3567899999999999998 344468999999999999875 59999999999994
Q ss_pred hhHHHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQG-----------KENDSEALFLESIRI 278 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 278 (377)
|....+++++|.+|..+| ++++|+.+|++++++
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 778899999999999875 899999999999998
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=4.8e-09 Score=95.32 Aligned_cols=175 Identities=7% Similarity=-0.067 Sum_probs=142.9
Q ss_pred CCh-hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhhCCCCCHhH
Q 017109 96 NDT-EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGK----------LAEAEKLFLSALQEAKEGFGERDPHV 164 (377)
Q Consensus 96 ~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~ 164 (377)
|++ ++|...+.+++. ..|....+|+..+.++...|+ +++++.++.++++. +|..
T Consensus 42 ~~~~eeal~~~~~~l~-------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~ 106 (567)
T 1dce_A 42 GELDESVLELTSQILG-------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKS 106 (567)
T ss_dssp TCCSHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred CCCCHHHHHHHHHHHH-------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCC
Confidence 444 344555555554 345667899999999999988 99999999999987 8888
Q ss_pred HHHHHHHHHHHHHhc--CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhc
Q 017109 165 ASACNNLAELYRVKK--AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR-KLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 165 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 241 (377)
..++...+.++...| +++++++++.++++. ++....+|...+.+....| .++++++++.++++..
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---- 174 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---- 174 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT----
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----
Confidence 999999999999999 779999999999998 3444689999999999999 8999999999998763
Q ss_pred CCCChhHHHHHHHHHHHHHHc--------------CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCh
Q 017109 242 GHGNIDYADTMYHLATVLYLQ--------------GKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRL 307 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (377)
+....+++..+.++... +.++++++++.+++.+.+ ....+|..++.++...+++
T Consensus 175 ----p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P--------~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 175 ----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--------NDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS--------SCSHHHHHHHHHHSCCCCC
T ss_pred ----CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCCc
Confidence 66778999999998875 557899999999998732 2235678888888888875
Q ss_pred hH
Q 017109 308 TD 309 (377)
Q Consensus 308 ~~ 309 (377)
++
T Consensus 243 ~~ 244 (567)
T 1dce_A 243 DV 244 (567)
T ss_dssp SC
T ss_pred cc
Confidence 55
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.92 E-value=1.2e-08 Score=71.97 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 017109 141 EAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220 (377)
Q Consensus 141 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 220 (377)
+|+..|+++++. .|....++..+|.++...|++++|+.+++++++. .| ....++..+|.++...
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DP---TYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CC---CcHHHHHHHHHHHHHc
Confidence 577888888865 5667789999999999999999999999999997 33 3357899999999999
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 017109 221 RKLEDACTYYERALKIKG 238 (377)
Q Consensus 221 g~~~~A~~~~~~al~~~~ 238 (377)
|++++|+..+++++++..
T Consensus 67 g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999999874
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.89 E-value=2.7e-08 Score=68.11 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=64.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
+|....+++.+|.++...|++++|+..|+++++. +|....++..+|.+|...|++++|+..+++++++....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 3556688999999999999999999999999998 67777899999999999999999999999999986654
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.88 E-value=1.7e-08 Score=71.09 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 017109 182 DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL 261 (377)
Q Consensus 182 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (377)
++|+..++++++. .|++ ..++..+|.++...|++++|+.++++++... |....++..+|.++..
T Consensus 2 ~~a~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQ-----GTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------PTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTT-----TCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHH
Confidence 3577888888875 3333 5789999999999999999999999999884 5667789999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcC
Q 017109 262 QGKENDSEALFLESIRILEENG 283 (377)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~ 283 (377)
.|++++|+..+++++++.+...
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhccccc
Confidence 9999999999999999876653
No 203
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.85 E-value=2.8e-07 Score=85.05 Aligned_cols=192 Identities=13% Similarity=0.000 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 017109 140 AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAE-PLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL 218 (377)
Q Consensus 140 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 218 (377)
......|++++.. .|.....+...+......|+.++|. ..+++++.. .|.. ...+...+....
T Consensus 326 ~Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-----~P~s---~~Lwl~~a~~ee 389 (679)
T 4e6h_A 326 ARMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-----IPNS---AVLAFSLSEQYE 389 (679)
T ss_dssp HHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHH
Confidence 4456789999887 6777889999999999999999997 999999876 2323 456788899999
Q ss_pred HccCHHHHHHHHHHHHHHHHHhc------CCCC--------hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 017109 219 VQRKLEDACTYYERALKIKGRVL------GHGN--------IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE 284 (377)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (377)
..|++++|...|++++....... .+.+ .....++...+.+..+.|..+.|...|.+|++.....
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-- 467 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-- 467 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS--
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--
Confidence 99999999999999998642110 0110 1244578888888888999999999999998752111
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 285 GDSMTCIRRLRYLAQTYVKAN-RLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
. ..++...|.+....| +++.|...|+.+++.+.. ....+...+......|+.+.|..+|++++..
T Consensus 468 --~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--------~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 468 --T---PDIYLENAYIEYHISKDTKTACKVLELGLKYFAT--------DGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp --C---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred --C---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--------chHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 1 123445566665554 489999999999998632 2455667778888899999999999999874
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.85 E-value=2.5e-08 Score=68.30 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=62.0
Q ss_pred CHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 161 DPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+|....++..+|.++...|++++|+.+++++++. .|+. ..++..+|.+|...|++++|+..+++++++...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET-----DPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4666789999999999999999999999999998 3333 468999999999999999999999999998754
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.85 E-value=3.7e-08 Score=71.88 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 017109 137 GKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQF 216 (377)
Q Consensus 137 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 216 (377)
+++++|+.+|+++.+. . ++. +. +|.+|...+..++|+.+|+++.+. .+ ..+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~------g-~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL------N-EMF---GC--LSLVSNSQINKQKLFQYLSKACEL-------NS---GNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT------T-CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC------C-CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC-------CC---HHHHHHHHHH
Confidence 4788999999999875 2 222 22 999999999999999999999885 23 4789999999
Q ss_pred HHH----ccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhhHHHHHHHHHHH
Q 017109 217 YLV----QRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYL----QGKENDSEALFLESIRI 278 (377)
Q Consensus 217 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 278 (377)
|.. .+++++|+.+|+++.+. ....++.++|.+|.. .+++++|+.+++++.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 89999999999999764 235788999999999 89999999999999875
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.80 E-value=5.6e-08 Score=70.89 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=92.4
Q ss_pred cCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017109 179 KAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATV 258 (377)
Q Consensus 179 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 258 (377)
+++++|+.+|+++.+. + ++ .+. +|.+|...+..++|+.+|+++.+. ....+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-----g--~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-----N--EM---FGC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CT---THH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-----C--CH---hhh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 5789999999999875 2 22 122 999999999999999999999875 235789999999
Q ss_pred HHH----cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q 017109 259 LYL----QGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK----ANRLTDAETVQRKILHI 320 (377)
Q Consensus 259 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 320 (377)
|.. .+++++|+.+|+++.+. .+ ..++.++|.+|.. .+++++|+.+|+++.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 998 89999999999999874 12 3567899999999 89999999999999875
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.64 E-value=1.2e-07 Score=64.60 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHH-HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchh
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVAS-ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIR 205 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 205 (377)
+..|..+...|++++|+..++++++. .|.... ++..+|.++...|++++|+.++++++++ .|+++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~- 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSP- 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTST-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcH-
Confidence 46788999999999999999999987 566677 9999999999999999999999999988 44443
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
.++.+ +.+.++...|+++....
T Consensus 70 --~~~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 70 --ALQAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp --HHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred --HHHHH--------HHHHHHHHHHHHHhccC
Confidence 22221 66777778777776664
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.62 E-value=1e-07 Score=65.02 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGV-AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
...|.++...|++++|+..++++++. .|++ .. ++..+|.++...|++++|+.+|++++++. |.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT-----EPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--------PD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-----CSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CC
Confidence 56788999999999999999999987 3333 46 88999999999999999999999999884 33
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
...++.. +.+.+++..|+++....+.
T Consensus 68 ~~~~~~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 68 SPALQAR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp STHHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred cHHHHHH--------HHHHHHHHHHHHHhccCcc
Confidence 3333322 5566777777777666543
No 209
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.49 E-value=0.00015 Score=61.95 Aligned_cols=190 Identities=9% Similarity=-0.035 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
.+...+|..|...|++++-.+++.......... .....+.....+-..+.. -+..+.-++.+..+++-++..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---- 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence 678899999999999999998888776554332 112344445555555443 355566677777777766542
Q ss_pred chhHHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 017109 203 DIRIGV--AFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILE 280 (377)
Q Consensus 203 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (377)
...... .-..+|..|...|+|.+|...+.+..+-+++. ++......++..-..+|...+++.++...+.++.....
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 222222 44589999999999999999999999888664 23467788899999999999999999999999998876
Q ss_pred HcCCCCCHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHh
Q 017109 281 ENGEGDSMTCIRRLRYLAQTYV-KANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 323 (377)
... .++...+.....-|.++. ..++|..|..+|-++.+-+..
T Consensus 171 ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 171 AIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred cCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 653 234455666777788899 899999999999998766543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.48 E-value=7.1e-06 Score=68.84 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH----hHHHHHHHHHHHHHHHh
Q 017109 126 FTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF----DKAEPLYLEAIKILQES 198 (377)
Q Consensus 126 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~ 198 (377)
++..|..+...++ +.+|+.+|++|+++ +|..+.++..++.+|...... .....-+.+++.....
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a- 269 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT- 269 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh-
Confidence 4455666666544 58999999999998 888888888777777532211 1222223333332211
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.+..+..+.++..++..+...|++++|+..+++++.+. +. ..++..+|.++...|++++|++.|++|+.+
T Consensus 270 -~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 -LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp -CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12234446788888998999999999999999999993 32 457788999999999999999999999998
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=7.2e-06 Score=56.22 Aligned_cols=83 Identities=20% Similarity=0.132 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
+.-.+.+|..++..|+|..|+.+|++|++....... .......++..+|.++..+|++++|+.++++++++ .|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Confidence 455789999999999999999999999988654311 12456789999999999999999999999999998 455
Q ss_pred chhHHHHHHHHH
Q 017109 203 DIRIGVAFHNLG 214 (377)
Q Consensus 203 ~~~~~~~~~~la 214 (377)
++ .+..+++
T Consensus 79 ~~---~~~~n~~ 87 (104)
T 2v5f_A 79 HQ---RANGNLK 87 (104)
T ss_dssp CH---HHHHHHH
T ss_pred CH---HHHhhHH
Confidence 54 4455554
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=2.8e-06 Score=58.30 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
+.-++.+|..++..|+|..|+.++++|++....... .......++..+|.++..+|++++|+.++++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~------- 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------- 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------
Confidence 456789999999999999999999999998654311 123456889999999999999999999999999884
Q ss_pred ChhHHHHHHHHH
Q 017109 245 NIDYADTMYHLA 256 (377)
Q Consensus 245 ~~~~~~~~~~la 256 (377)
|....+..+++
T Consensus 77 -P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 -PEHQRANGNLK 87 (104)
T ss_dssp -TTCHHHHHHHH
T ss_pred -CCCHHHHhhHH
Confidence 44455566655
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.47 E-value=7e-06 Score=73.41 Aligned_cols=167 Identities=10% Similarity=0.016 Sum_probs=121.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---------CHhHHHHHHHHHHHHHH
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---------AFDKAEPLYLEAIKILQ 196 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~ 196 (377)
+..+-..+.+.|++++|+.+|++..+. +-.| ...+++.+-.++...+ ..++|.+.+++....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~------Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-- 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRN------GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-- 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH------TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence 445557788999999999999998764 2222 2345566656665443 367788887776543
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
+- .| ...+|+.+...|.+.|++++|..++++..+. +- .| ...+|+.+-..|.+.|+.++|.+++++..
T Consensus 100 ---G~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 100 ---KV-VP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GI-QP-RLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp ---TC-CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-ccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 21 11 1468899999999999999999999987653 11 12 35678888899999999999999999876
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 277 RILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+. + -.| ...++..+-..+.+.|+.++|.+++++..+.
T Consensus 168 ~~----G--~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 168 ES----E--VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HT----T--CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hc----C--CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 53 1 111 1245778889999999999999999987654
No 214
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.46 E-value=8.8e-05 Score=63.29 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCC
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGH 243 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 243 (377)
-.+...||.+|...|++++-.+++.......... .....+.....+-..+.. -+..+.-.+...++++.++..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~--- 92 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE--- 92 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---
Confidence 3567899999999999999988888776654443 233344444445444443 355666777888888877532
Q ss_pred CChhHHH--HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 244 GNIDYAD--TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 244 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
...... .-..+|.+|...|+|.+|.+.+.+..+-++... +......++..-..+|...+++.++...+.++....
T Consensus 93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d--d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD--DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 122222 445899999999999999999999998887754 567788888889999999999999999999999887
Q ss_pred HhccCCCChh-HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHh
Q 017109 322 ESSKGWNSLD-TVIAAEGLALTLQ-STGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 322 ~~~~~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 365 (377)
.... .+|. .+.....-|.++. ..++|.+|..+|-++.+.+.+
T Consensus 170 ~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 170 NAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred ccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 6542 3343 4556666778888 899999999999988765543
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.43 E-value=1.2e-05 Score=71.93 Aligned_cols=167 Identities=11% Similarity=0.018 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHHH
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR---------KLEDACTYYERALKIK 237 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~ 237 (377)
.+..+-..+.+.|+.++|.+.|++..+. |- .|. ..+|+.+-..+...+ ..++|.+.|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----Gv-~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----GV-QLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TC-CCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 3455667888999999999999998764 21 111 346666666665443 367788888776543
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 238 GRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
+- .| ...+++.+...+.+.|++++|..++++..+. +. .| ...++..+-..|.+.|+.++|.+++++.
T Consensus 100 ----G~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~--~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 ----KV-VP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF----GI--QP-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp ----TC-CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC--CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 12 3467888999999999999999999987652 11 11 2345778888999999999999999987
Q ss_pred HHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 318 LHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
.+. |. .| ...++..+-..+.+.|+.++|..++++..+
T Consensus 167 ~~~-----G~-~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 167 VES-----EV-VP-EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHT-----TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhc-----CC-CC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 643 11 12 256888899999999999999999998755
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.37 E-value=4.2e-06 Score=55.84 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 120 TSKWRVFTDSGRDYFLQGK---LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
|....++..+|.+++..++ .++|...++++++. +|....++..+|..++..|+|++|+.+++++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445788889999877666 79999999999998 8999999999999999999999999999999886
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.26 E-value=4e-05 Score=64.36 Aligned_cols=133 Identities=12% Similarity=0.055 Sum_probs=91.7
Q ss_pred HHHHHHHHHhc---CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHhc
Q 017109 169 NNLAELYRVKK---AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR----KLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 169 ~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~ 241 (377)
+..|..+...+ ++.+|+.+|++++++ +|..+.++..++.+|.... .......-+.+++......
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~- 270 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL- 270 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-
Confidence 34455555444 458999999999998 4555566666666664221 1122223333444422111
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...+..+.++..++..+...|++++|+..+++++.+ +. . ...+..+|.++...|++++|++.|.+|+.+
T Consensus 271 -~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-------n~-s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 -PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------EM-S-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp -GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CC-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------CC-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 122555778888888888899999999999999998 21 1 345678999999999999999999999988
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.16 E-value=0.00011 Score=59.10 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=82.1
Q ss_pred CHhHHHHHHHHHHHHHH---h--c------CHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-----cCHH
Q 017109 161 DPHVASACNNLAELYRV---K--K------AFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ-----RKLE 224 (377)
Q Consensus 161 ~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~ 224 (377)
++..+..++..|.+... . | ....|...+++++++ .| ....+.++..+|.+|... |+.+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL-----DP-~~~~GsA~~~LG~lY~~vPp~~gGd~e 221 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL-----WP-SYQEGAVWNVLTKFYAAAPESFGGGME 221 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH-----CT-THHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh-----CC-CcccCHHHHHHHHHHHhCCCccCCCHH
Confidence 34556666666665543 1 2 346788888888888 22 223567999999999995 9999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHH
Q 017109 225 DACTYYERALKIKGRVLGHGNIDY-ADTMYHLATVLYL-QGKENDSEALFLESIRILEE 281 (377)
Q Consensus 225 ~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 281 (377)
+|..+|++++++. |.. ..+++..|..+.. +|++++|..++++++..-..
T Consensus 222 kA~~~ferAL~Ln--------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 222 KAHTAFEHLTRYC--------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHC--------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhC--------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999999999995 543 6788889999888 59999999999999986444
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.16 E-value=8.5e-05 Score=54.13 Aligned_cols=126 Identities=15% Similarity=-0.005 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC--
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP-- 201 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-- 201 (377)
++..-...+...|.|+.|+.....++.+.+.....-.| ....++..+|.+++..|+|..|...|++++...+.....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35556677889999999999999998886543111122 457899999999999999999999999999987643111
Q ss_pred ---------------CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017109 202 ---------------EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVL 259 (377)
Q Consensus 202 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 259 (377)
+.+....+.+.++.||...|++++|+..++..-.. ...+.+...||.+|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---------~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---------QRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---------GCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---------hcCHHHHHHHHHHh
Confidence 01123467889999999999999999987653211 33455666667665
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.13 E-value=0.00017 Score=52.54 Aligned_cols=110 Identities=11% Similarity=0.006 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG-DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGW 327 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 327 (377)
..++..-...+...|.|+.|+.....++.+....... .......++..+|..++..|+|..|...|++++...+.....
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456667778889999999999999999887664422 234567788899999999999999999999999887643211
Q ss_pred C-----------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017109 328 N-----------------SLDTVIAAEGLALTLQSTGSLMEAQELFER 358 (377)
Q Consensus 328 ~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 358 (377)
. .+...++.+.++.||.+.|++++|+..++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1 122347889999999999999999998764
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.06 E-value=4.1e-05 Score=50.95 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHHHHHHhcC---HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 162 PHVASACNNLAELYRVKKA---FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
|..+..+..+|.+++..++ .++|..+++++++. +|....+...+|..++..|+|++|+.+++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456788889999887666 79999999999998 44446899999999999999999999999998763
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.03 E-value=0.0006 Score=54.97 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017109 223 LEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQ-----GKENDSEALFLESIRILEENGEGDSMTCIRRLRYL 297 (377)
Q Consensus 223 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (377)
..+|...+++++++- + ......++..+|.+|... |+.++|..+|++++++.+. .....+...
T Consensus 179 l~~A~a~lerAleLD-----P-~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-------~~id~~v~Y 245 (301)
T 3u64_A 179 VHAAVMMLERACDLW-----P-SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-------HDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHC-----T-THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-------TCSHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----C-CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-------CCchHHHHH
Confidence 567888888888884 1 123577999999999995 9999999999999998321 113456778
Q ss_pred HHHHHH-hCChhHHHHHHHHHHHHH
Q 017109 298 AQTYVK-ANRLTDAETVQRKILHIM 321 (377)
Q Consensus 298 a~~~~~-~g~~~~A~~~~~~al~~~ 321 (377)
|..+.. +|++++|.+++++++..-
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 888877 599999999999999863
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.01 E-value=0.00034 Score=50.60 Aligned_cols=84 Identities=19% Similarity=0.033 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc---CHhHHHHHHHHHHHHHHHhcCCCch-hHHHHHHHHH
Q 017109 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK---AFDKAEPLYLEAIKILQESFGPEDI-RIGVAFHNLG 214 (377)
Q Consensus 139 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la 214 (377)
...+.+.|.+.++. .+....+.+++|.++...+ +.++++..++..++. +.| ....+++++|
T Consensus 14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence 34455666665542 3456789999999999988 677999999998886 223 4568999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHHH
Q 017109 215 QFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
..+.+.|+|++|..++++++++-
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHhcC
Confidence 99999999999999999999994
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.99 E-value=0.00018 Score=52.04 Aligned_cols=67 Identities=10% Similarity=-0.063 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQG---KLAEAEKLFLSALQEAKEGFGERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
...++.+.+|.++...+ +.++++.+++..++. +.| ...++++++|..++..|+|++|..++++++++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 35688999999999988 677999999999886 125 66899999999999999999999999999998
No 225
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.93 E-value=0.0014 Score=58.50 Aligned_cols=188 Identities=12% Similarity=0.012 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhc---------CC---------
Q 017109 140 AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESF---------GP--------- 201 (377)
Q Consensus 140 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~--------- 201 (377)
......|++++.. .|.....+...+..+...|+.++|...+++++.. .... ..
T Consensus 196 ~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHH
Confidence 4456788888876 4555788888899999999999999999999976 2110 00
Q ss_pred --------------CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-Chh
Q 017109 202 --------------EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQG-KEN 266 (377)
Q Consensus 202 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~ 266 (377)
.......++...+......+..+.|...|.++ .. + +.....+...|.+....+ +.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~--~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------E--GVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------S--CCCHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------C--CCChHHHHHHHHHHHHHCCChH
Confidence 00001123333344444556677777777766 21 1 112334444455554444 588
Q ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 267 DSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 267 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
.|...++.+++.+ ++.+.. +...+......|+.+.|...|+++.. ....+......-...
T Consensus 338 ~ar~ife~al~~~-----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~~k------------~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-----PDSTLL---KEEFFLFLLRIGDEENARALFKRLEK------------TSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHC-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHSCC------------BHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH------------HHHHHHHHHHHHHHC
Confidence 8888888887753 123332 33345666677888887777777610 145566666666777
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 017109 347 GSLMEAQELFERCLEARKK 365 (377)
Q Consensus 347 g~~~~A~~~~~~al~~~~~ 365 (377)
|+.+.+...+++++.....
T Consensus 398 G~~~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 398 GSMELFRELVDQKMDAIKA 416 (493)
T ss_dssp SCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999886653
No 226
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.0028 Score=55.64 Aligned_cols=219 Identities=10% Similarity=0.012 Sum_probs=136.6
Q ss_pred CCChhhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Q 017109 95 QNDTEGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAEL 174 (377)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 174 (377)
.|++.+|....+ .++.....+.+.+...++...+...+...|+++...+.+.-... ..+. .+...........-
T Consensus 29 ~~~~~~a~e~ll-~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~ 102 (445)
T 4b4t_P 29 QNDCNSALDQLL-VLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVME 102 (445)
T ss_dssp HHHHHHHHHHHH-HHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHH
Confidence 356666655443 34444445567777888999999999999999887776543221 1111 12222222222222
Q ss_pred HH-HhcCHhHHHHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 175 YR-VKKAFDKAEPLYLEAIKILQESFGPE---DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 175 ~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
+. .....+ .......+.......... ....+.....++.++...|++.+|...+.....-... ..+......
T Consensus 103 ~l~~~~~~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~--~~~~~~kve 178 (445)
T 4b4t_P 103 YLKSSKSLD--LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG--SMEMSEKIQ 178 (445)
T ss_dssp HHHHHCTTH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--SSCHHHHHH
T ss_pred HHhcCCchh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh--cccHHHHHH
Confidence 22 112111 111222222221111111 1224667788999999999999999999987533211 122345577
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
.+....+++...+++.+|...+.++........ +........+...|.++...++|.+|-.+|.++.......
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 888899999999999999999999865444432 1233456677889999999999999999999998765443
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.0056 Score=53.71 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=135.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQ 215 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 215 (377)
.|++++|++.+....+..+. +.|.+....+...+..++...|+++...+++.-... ..+.- ............
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~--~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~ql-k~ai~~~V~~~~ 101 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQ--ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQL-KLSIQYMIQKVM 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTTS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhh--ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhhh-HHHHHHHHHHHH
Confidence 36778888766544443332 255666788888999999999999887766543221 11211 111111111111
Q ss_pred HHH-HccCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 017109 216 FYL-VQRKLEDACTYYERALKIKGRVLGHG---NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCI 291 (377)
Q Consensus 216 ~~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 291 (377)
-+. .....+. ......++......... ....+.....|+.++...|++.+|...+.....- ..+..+.....
T Consensus 102 ~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E--t~~~~~~~~kv 177 (445)
T 4b4t_P 102 EYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE--TYGSMEMSEKI 177 (445)
T ss_dssp HHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCSSSCHHHHH
T ss_pred HHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHhcccHHHHH
Confidence 121 1122111 11112222211111110 1235667788999999999999999999987532 22233455667
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-TVIAAEGLALTLQSTGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 365 (377)
..+....++|...+++.+|...+.++....... ..++. ....+...|.++...++|.+|..+|.++.+....
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 778888999999999999999999986544333 22333 4667788899999999999999999999876544
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.59 E-value=0.00064 Score=48.43 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHcCCh------hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKE------NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
.....+..........|+. ++-++.|++++...+..........+..+...|.. ...++.++|.+.|+.++.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 3345566666666666888 78888899888775544333456677778888866 6779999999999999986
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 017109 321 MESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 363 (377)
. ...+.++...|+.-.++|+...|.+.+.+++.+.
T Consensus 90 h--------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 C--------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp C--------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h--------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 1 1128899999999999999999999999998743
No 229
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.37 E-value=0.013 Score=52.32 Aligned_cols=173 Identities=10% Similarity=0.035 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC---------CC-----------------------CCHhHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGF---------GE-----------------------RDPHVASAC 168 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~-----------------------~~~~~~~~~ 168 (377)
....++...+..+...|+.++|...|++|+.. .... .. .......++
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 34677888899999999999999999999976 2110 00 000111233
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCCCChh
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR-KLEDACTYYERALKIKGRVLGHGNID 247 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (377)
...+......++.+.|...|.++ .. +.. ...++...|.+-...+ +.+.|...|+.+++.. ++.+
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~------~~~--~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~- 354 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GN------EGV--GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDST- 354 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TT------SCC--CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hC------CCC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCH-
Confidence 44444555567788888888887 21 111 2345555666666666 6999999999999864 2223
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 017109 248 YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 323 (377)
..+...+......|+.+.|...++++. .+ ...+......-...|+.+.+...+++++.....
T Consensus 355 --~~~~~yid~e~~~~~~~~aR~l~er~~---------k~---~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 355 --LLKEEFFLFLLRIGDEENARALFKRLE---------KT---SRMWDSMIEYEFMVGSMELFRELVDQKMDAIKA 416 (493)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHSC---------CB---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHH---------HH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcc
Confidence 334456777788999999999998872 12 233555566666779999999999999987653
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.13 E-value=0.014 Score=41.65 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKL------AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQE 197 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 197 (377)
+.+.......-..|+. ++-++.|++|+..............+..+...+.. ...++.++|.+.|+.++++ .
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~-h- 90 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN-C- 90 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH-C-
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH-h-
Confidence 4444445555555888 88888999988764322222344566777777755 5669999999999999997 1
Q ss_pred hcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 198 SFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
...+.++...|..-.++|+...|...+.+++...
T Consensus 91 ------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 ------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp ------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 1127889999999999999999999999999874
No 231
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0067 Score=53.02 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC
Q 017109 206 IGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG 285 (377)
Q Consensus 206 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 285 (377)
...++..+|..|...|++++|.+.|.++...+. +. ......+.....++...+++..+..++.++.......+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~-- 202 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---ST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG-- 202 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---Ch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC--
Confidence 345788999999999999999999999887652 22 45577888899999999999999999999988766543
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
+...........|.++...++|.+|..+|..+...
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 44445555666788888999999999999887654
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.87 E-value=0.056 Score=37.57 Aligned_cols=85 Identities=18% Similarity=0.024 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhH---HHHHHHHHHHHHHHhcCCCch-hHHHHHHHH
Q 017109 138 KLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK---AEPLYLEAIKILQESFGPEDI-RIGVAFHNL 213 (377)
Q Consensus 138 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l 213 (377)
....+...|.+.+.. .+....+.+++|.++....+... ++..++..+. .+.| ..-.+++.+
T Consensus 16 ~l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHH
Confidence 344555666665543 33556888999999998877665 5555555443 2323 566889999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
|..+++.|+|++|..+++..+++-
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999984
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.012 Score=51.53 Aligned_cols=109 Identities=15% Similarity=0.062 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP 201 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 201 (377)
...+...+|..|...|++++|.+.|.++..... ........+..+..++...+++..+..++.++....... +
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--~ 202 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--G 202 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--C
Confidence 345678899999999999999999999887642 234677888999999999999999999999998876553 3
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 202 EDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 202 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
+...........|.++...++|.+|..+|..+....
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 444455666777888899999999999998876553
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.81 E-value=0.024 Score=39.45 Aligned_cols=67 Identities=19% Similarity=0.110 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHcCChhh---HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKEND---SEALFLESIRILEENGEGDSM-TCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....+.+++|+++.......+ ++.+++..++. +.| ..-.+++.+|..+.+.|+|++|..+++..+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 346788999999999887665 66666665542 323 56678899999999999999999999999988
No 235
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.053 Score=47.69 Aligned_cols=176 Identities=7% Similarity=-0.050 Sum_probs=73.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHH--HHHHhhC-CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHH-------HHHHHHh-
Q 017109 130 GRDYFLQGKLAEAEKLFLSAL--QEAKEGF-GERDPHVASACNNLAELYRVKKAFDKAEPLYLEA-------IKILQES- 198 (377)
Q Consensus 130 ~~~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~~~~- 198 (377)
-..++..+++++|..+....+ +...... ..-+...+.+|+..+.++...|+........... +..++..
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 334567789999988877665 2221110 0113456778888888888888776543222111 2222221
Q ss_pred cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 199 FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 199 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
...+....+..++.+-..|...+.+++|..+..++.-. .. ...+...+..++.+|.++..+++|.+|.+++..|+..
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 12244556788889999999999999999999887411 00 0112445777888999999999999999999999876
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhCChhH
Q 017109 279 LEENGEGDSMTCIRRLRYLAQTYVKANRLTD 309 (377)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 309 (377)
++.... .......++..+..+-+-+|+..+
T Consensus 300 ap~~~~-a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 300 APHNSK-SLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp CSCSSS-CSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcchh-hhhHHHHHHHHHHhHHhhcCCCCC
Confidence 443211 122333444444444444576543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.15 Score=47.45 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=82.5
Q ss_pred cCC-HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHH---HHhcCHhHHHHHHHHHHHHHHHhc---CCCc-----
Q 017109 136 QGK-LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELY---RVKKAFDKAEPLYLEAIKILQESF---GPED----- 203 (377)
Q Consensus 136 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~---~~~~----- 203 (377)
.|+ ++.|+.++++.... +|.... +...+.+. ....+--+|+....++++...... .+.+
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455 57788888887654 444322 22222221 122345567777777775432111 1111
Q ss_pred --hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 204 --IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 204 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
+.....+...+..+...|+++-|+.+.++|+... |....+|..|+.+|..+|+|+.|+-.+.-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1223456666888888999999999999999996 777899999999999999999999877655
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.90 E-value=0.12 Score=49.31 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=35.9
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
.....|++++|.+..+. . ++ ...+..+|..+...|+++.|+.+|.++-+
T Consensus 661 ~~l~~~~~~~A~~~~~~-------~---~~---~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-------E---SA---EMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-------C---CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHh-------h---Cc---HhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 34566777777665422 1 22 25789999999999999999999998633
No 238
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.86 E-value=0.2 Score=48.15 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcC
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFG 200 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 200 (377)
..-..++.+-..|...|+.++|..++.+..+...+-. .....+|+.|-..|...|+.++|.+++++..+. |
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~----~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----G 195 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK----LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----G 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT----TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC----CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C
Confidence 3456788999999999999999999988765433221 223578999999999999999999999998764 2
Q ss_pred CCchhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHH
Q 017109 201 PEDIRIGVAFHNLGQFYLVQRKL-EDACTYYERALKI 236 (377)
Q Consensus 201 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 236 (377)
- .|+ ..+|+.+-..+.+.|+. ++|.+++++..+.
T Consensus 196 ~-~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 L-TPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp C-CCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred C-CCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 1 222 46788888889999984 7888888877643
No 239
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.85 E-value=0.13 Score=49.27 Aligned_cols=106 Identities=7% Similarity=-0.131 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVL 241 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (377)
.....+++.+-..|...|+.++|..++.+..+...+-..++ ..+|+.+-..|.+.|+.++|.+.|++..+.
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----- 194 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKDA----- 194 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 44566889999999999999999999988765433322333 468999999999999999999999998654
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCh-hhHHHHHHHHHHH
Q 017109 242 GHGNIDYADTMYHLATVLYLQGKE-NDSEALFLESIRI 278 (377)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 278 (377)
|- .| ...+|+.+-..+.+.|+. ++|.+++++..+.
T Consensus 195 G~-~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 GL-TP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TC-CC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CC-CC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 21 13 345677777788888885 6888888876653
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.35 Score=45.12 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=79.1
Q ss_pred hcC-HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHHhc---CCCC-----
Q 017109 178 KKA-FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL---VQRKLEDACTYYERALKIKGRVL---GHGN----- 245 (377)
Q Consensus 178 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~---~~~~----- 245 (377)
.|+ ++.|+.++++..+. .|.. .++...+.+.. ...+--+|+..+.++++...... .+.+
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445 57788888876654 2211 12222222221 22344577888877775432111 0111
Q ss_pred --hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 246 --IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 246 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
+.....+...+..+...|+++-|+++.++++.. .|....+|..|+.+|..+|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 222345666788889999999999999999987 3344567999999999999999999777654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.32 E-value=0.49 Score=40.60 Aligned_cols=110 Identities=15% Similarity=0.029 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC---CC-----------HhHHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE---RD-----------PHVASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
.+...|......|+.+.|...+.+|+.+++-.+-+ +. .....+...++..+...|++.+++..+.+
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555556789999999999999875322111 11 11234556678888999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 017109 191 AIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG 242 (377)
Q Consensus 191 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (377)
.+.. +|..-..+..+..++...|+..+|+..|++.......-.+
T Consensus 197 ~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 197 LTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 9876 3433468888999999999999999999999887655444
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.27 E-value=0.28 Score=42.12 Aligned_cols=69 Identities=7% Similarity=-0.090 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.+...++..+...|++.+|+..+...+.. +|..-..+..+..++...|+..+|+..|+++.....+-+|
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 34566788889999999999999998776 3544668888999999999999999999999887766555
No 243
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.20 E-value=0.12 Score=45.66 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 165 ASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 165 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
..++..||.+......++.|..+|.+|..+ .|..+..++.+|.+....|+.-+|+-+|.+++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 357788999999999999999999999998 455578999999999999999999999988874
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.11 E-value=0.53 Score=32.88 Aligned_cols=65 Identities=6% Similarity=-0.079 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 122 KWRVFTDSGRDYFLQGKL---AEAEKLFLSALQEAKEGFGERDP-HVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
...+.+..|.++....+. .+++.+++..++. ++ ..-++++.+|..+.+.|+|++|..+.+..+++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 347888999999888754 4677777776653 34 57889999999999999999999999999987
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.02 E-value=0.4 Score=33.51 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHcCCh---hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 248 YADTMYHLATVLYLQGKE---NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 248 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...+.+++|+++.+..+. .+++.+++..++. +....-.+++.+|..+.+.|+|++|.++.+..+++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 357888999999988765 3577777776653 22245667889999999999999999999999876
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.57 Score=34.75 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=65.6
Q ss_pred HHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017109 174 LYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMY 253 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (377)
+....|+++.|.+..++. ++ ...|..+|......|+++-|+.+|+++-+..
T Consensus 14 LAL~lg~l~~A~e~a~~l----------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~---------------- 64 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----------ND---SITWERLIQEALAQGNASLAEMIYQTQHSFD---------------- 64 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH----------------
T ss_pred HHHhcCCHHHHHHHHHHh----------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH----------------
Confidence 345678888888776542 12 3578999999999999999999998864442
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKI 317 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (377)
.+..+|...|+.+.-... .++....+ . +.....+++.+|+++++++.|.+.
T Consensus 65 ~L~~Ly~~tg~~e~L~kl----a~iA~~~g---~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKM----QNIAQTRE---D------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTCHHHHHHH----HHHHHHTT---C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHH----HHHHHHCc---c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 234455566665443333 23333222 1 222344566789998888888654
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.6 Score=34.63 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=38.3
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
+....|+++.|.+..++. .....|..+|......|+++-|+.+|.++-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 345788999888876542 2245788999999999999999999998643
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.79 E-value=0.71 Score=32.72 Aligned_cols=67 Identities=6% Similarity=-0.053 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLA---EAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
...++.++.|.++....+.. +++.+++..+.. +....-++++.+|..+.+.|+|++|..+.+..++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35678899999999887654 577777766653 12257789999999999999999999999999997
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.68 E-value=0.88 Score=33.27 Aligned_cols=98 Identities=5% Similarity=-0.140 Sum_probs=70.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH--------
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEE-------- 281 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------- 281 (377)
-..++.++.-.|.|..++-++.+ ..++.+.+.-+.+|...+++..|+..++..+.--.+
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 45577788889999888766543 344566677788999999999999999998832111
Q ss_pred --cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 282 --NGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 282 --~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
...-+....-..+..+|.++...|+.++|+.++......
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 101112222334677899999999999999999887653
No 250
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.11 Score=45.79 Aligned_cols=145 Identities=9% Similarity=-0.005 Sum_probs=62.4
Q ss_pred HHHHhcCHhHHHHHHHHHH--HHHHHhc-CCCchhHHHHHHHHHHHHHHccCHHHHHHHHH-------HHHHHHHH-hcC
Q 017109 174 LYRVKKAFDKAEPLYLEAI--KILQESF-GPEDIRIGVAFHNLGQFYLVQRKLEDACTYYE-------RALKIKGR-VLG 242 (377)
Q Consensus 174 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-------~al~~~~~-~~~ 242 (377)
.+...+++++|.++....+ ......+ ..-+...+.+|+..+.++...|+......... ..+...+. ...
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456788999888877665 2222110 01144456778888888888887665432221 12222222 122
Q ss_pred CCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 243 HGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
.+....+..++.+-+.|...+.++.|..+..++. ++... ......+..++.+|.++..+++|.+|.+++..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3345567788889999999999999999999874 22211 1234567788899999999999999999999987643
No 251
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.45 E-value=0.19 Score=47.88 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
..+...+...|.+++|+...+. +. . ........|++++|.+..+. ...
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------------~~---~---~f~~~l~~~~~~~A~~~~~~-------------~~~ 680 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------------QD---Q---KFELALKVGQLTLARDLLTD-------------ESA 680 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------------HH---H---HHHHHHHHTCHHHHHHHHTT-------------CCC
T ss_pred HHHHHHHHhCCChHHheecCCC-------------cc---h---heehhhhcCCHHHHHHHHHh-------------hCc
Confidence 5556667778888777755421 10 1 12234678999988877532 122
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
...+..+|..+...|+++.|+.+|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 457889999999999999999999885
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.15 E-value=0.2 Score=44.38 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+++..+|.+......++.|..+|.+|..+ .|.....++.||.+....|+.-+|.-+|.+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 56778999999999999999999999998 8899999999999999999999999999998864
No 253
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.77 E-value=2.5 Score=36.24 Aligned_cols=131 Identities=10% Similarity=-0.028 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHH
Q 017109 227 CTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEG---------DSMTCIRRLRYL 297 (377)
Q Consensus 227 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~l 297 (377)
.+.|+..+.-+.....+ - .....+..+.....+.++|.+++++........... .......+...+
T Consensus 59 ~~ly~~fi~~f~~kin~--L---~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQ--L---SVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHHSCS--H---HHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--H---HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 45666655555432222 1 111123445566788999999998765433221100 112344566778
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 298 AQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
+..|...|+.++|..+++++-.......+.+.......+...+..+...+++..+....-.++..
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999998888766665556777778888899999998876666555543
No 254
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=93.13 E-value=2.5 Score=33.02 Aligned_cols=58 Identities=9% Similarity=-0.083 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh
Q 017109 308 TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEARKK 365 (377)
Q Consensus 308 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 365 (377)
+.|...|+.|.++......+.||.......+.+..|.. .++.++|....+++++-.-.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999888889999777777777776655 79999999988888765433
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.10 E-value=1.6 Score=30.89 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHcCChh---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 247 DYADTMYHLATVLYLQGKEN---DSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....+.+++|+++....+.. +++.+++..+.. .....-.+++.+|..+.+.|+|++|.++.+..+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44678899999999887654 567777776652 12234556889999999999999999999999987
No 256
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=93.05 E-value=2.7 Score=33.24 Aligned_cols=57 Identities=9% Similarity=-0.077 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 017109 307 LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEAR 363 (377)
Q Consensus 307 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 363 (377)
.+.|...|+.|.++......+.||.......+.+..|.. .++.++|....+++++-.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999888899999877777777777655 799999999888887654
No 257
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=92.79 E-value=3 Score=33.09 Aligned_cols=184 Identities=9% Similarity=-0.038 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCC
Q 017109 166 SACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHG 244 (377)
Q Consensus 166 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 244 (377)
.-+..++.+..+.++|++...+.+++.+. +........=.+.++.+|-. .|....+...+... +......+
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~-----~~~~eLt~EERnLLSvaYKNvig~rR~swRiissi-eqke~~k~-- 80 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNS-----LGSEELTVEERNLLSVAYKNVIGARRASWRIISSI-EQKEESRG-- 80 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHHhhccC--
Confidence 34557788888999999999999998875 20011112223333333321 12222333333221 11111101
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHh----------CChhHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE---GDSMTCIRRLRYLAQTYVKA----------NRLTDAE 311 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~----------g~~~~A~ 311 (377)
+.. ...+..-|.. .--++=...+...+.+...... .+....+..+...|..|.-. .-.+.|.
T Consensus 81 ~~~----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~ 155 (260)
T 1o9d_A 81 NEE----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 155 (260)
T ss_dssp CHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred cHH----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence 111 1111111111 1112223344455554433211 11112222233345554422 1235788
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 017109 312 TVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEA 362 (377)
Q Consensus 312 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 362 (377)
..|+.|.++......+.||.......+.+..|.. .++.++|....+++++-
T Consensus 156 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 156 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999888899999777777777776655 79999998887776654
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.59 E-value=9.1 Score=38.15 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh---------------cCCCchhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQES---------------FGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYE 231 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 231 (377)
..+.+|.++...|++++|..+|+++-...... ..+........|..+..++...|.++.++++.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34789999999999999999998873211000 000111233567788889999999999999999
Q ss_pred HHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHH
Q 017109 232 RALKIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 232 ~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
.|++.. .++.+. ....+.++-..+...|+|++|...+.
T Consensus 924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 998764 233333 23467778888999999999977764
No 259
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.45 E-value=4.7 Score=34.55 Aligned_cols=133 Identities=8% Similarity=-0.023 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHH
Q 017109 184 AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH---------GNIDYADTMYH 254 (377)
Q Consensus 184 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~ 254 (377)
-.+.|+..+.-+.... ++. .....+..+.....+.++|.+++++........... .......+...
T Consensus 58 ~~~ly~~fi~~f~~ki---n~L--~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~ 132 (393)
T 4b4t_O 58 RLRLYDNFVSKFYDKI---NQL--SVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSE 132 (393)
T ss_dssp CHHHHHHHHHHHHHHS---CSH--HHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHH
Confidence 3456666666555432 221 111123445566788999999998765443322111 11234566778
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
++..|...|+.++|..+++++-.......+.+.......+...+..+...+++..+....-..+...
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 8999999999999999999999988887666666777777788888888999887766655555443
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.90 E-value=4.8 Score=33.40 Aligned_cols=245 Identities=10% Similarity=-0.021 Sum_probs=132.9
Q ss_pred cccCCCh---hhhhhhhhhhhccccccccchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHH
Q 017109 92 STSQNDT---EGENAFGLRKIEDGSVVSNIHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASAC 168 (377)
Q Consensus 92 ~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 168 (377)
....|+| =||...++....... -.+......++++.-+..+...|++..|.++..-.++.+.+..-+-+ ....
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~-~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~~ 97 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVAARYS-KQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GASR 97 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHH
T ss_pred HHhCCCCccccHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHH
Confidence 3445666 455444443332221 12244456666777777777777777777777777776666522222 2344
Q ss_pred HHHHHHHHHhcCHh-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHH--------HHHHHHH
Q 017109 169 NNLAELYRVKKAFD-KAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYER--------ALKIKGR 239 (377)
Q Consensus 169 ~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~~~ 239 (377)
..+..++.....-+ .=..+..++++-..+. +.........+..+|..|+..+++.+|..++-- ..++.-+
T Consensus 98 ~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 45555555444211 2245666677665553 222233346788899999999999999888731 1122212
Q ss_pred hcCCCChhHHHHHHHHH-HHHHHcCChhhHHHHHHHHHHHHHHcCC-----------------CCCHHHHHHHHHHHHHH
Q 017109 240 VLGHGNIDYADTMYHLA-TVLYLQGKENDSEALFLESIRILEENGE-----------------GDSMTCIRRLRYLAQTY 301 (377)
Q Consensus 240 ~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~~~~la~~~ 301 (377)
......+.....+...+ ..|...++...|...+....+...+... +..|..- +..+..+-
T Consensus 177 w~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLN--Fl~lLllt 254 (336)
T 3lpz_A 177 WYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLN--FISMLLLS 254 (336)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHH--HHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHH--HHHHHHHH
Confidence 11111233334443333 4577889999999988877766533211 1123222 22222333
Q ss_pred HHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC
Q 017109 302 VKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG 347 (377)
Q Consensus 302 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 347 (377)
...+.. ..|+...+.+......+.+.....+..+|.+|....
T Consensus 255 ~q~~~~----~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 255 VQKGSP----DLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHSCCH----HHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HhcCCH----HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 344543 445544444444333332245778888999998653
No 261
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=90.71 E-value=5.3 Score=31.69 Aligned_cols=56 Identities=9% Similarity=-0.059 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Q 017109 308 TDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEARK 364 (377)
Q Consensus 308 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 364 (377)
+.|...|+.|.++. ....+.||.......+.+..|.. .++.++|....+++++-.-
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 57889999999999 87889999777777777776665 7999999999888877543
No 262
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=90.44 E-value=5.4 Score=31.35 Aligned_cols=57 Identities=9% Similarity=-0.020 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 017109 307 LTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQS-TGSLMEAQELFERCLEAR 363 (377)
Q Consensus 307 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 363 (377)
.+.|...|+.|.++......+.||.......+.+..|.. .++.++|....+++++-.
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999888899999877777777766654 799999999888887654
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.37 E-value=10 Score=37.83 Aligned_cols=103 Identities=12% Similarity=-0.069 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---------------CCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHH
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEG---------------FGERDPHVASACNNLAELYRVKKAFDKAEPLYLE 190 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 190 (377)
.+.+|.++...|++++|..+|+++-...... ...........|..+..++...|.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4889999999999999999998874211000 0001112345677888899999999999999999
Q ss_pred HHHHHHHhcCCCchh-HHHHHHHHHHHHHHccCHHHHHHHHHH
Q 017109 191 AIKILQESFGPEDIR-IGVAFHNLGQFYLVQRKLEDACTYYER 232 (377)
Q Consensus 191 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 232 (377)
|++.. +++++. ....+.++=..+...|+|++|-..+..
T Consensus 925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 98762 223332 334677888889999999999777643
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.30 E-value=6.7 Score=32.23 Aligned_cols=181 Identities=9% Similarity=-0.015 Sum_probs=105.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNL 213 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 213 (377)
...|+|=+|.+.++.......+. .........+..-+..+...|++..|.+...-.++.+.+...+.+ ......+
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~---~~~~~rl 98 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD---DISVARL 98 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS---HHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHH
Confidence 34466666666665555444333 223344555555566666667777777776666666666532222 2234444
Q ss_pred HHHHHHccCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH------------HHHHH
Q 017109 214 GQFYLVQRKLE-DACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES------------IRILE 280 (377)
Q Consensus 214 a~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------l~~~~ 280 (377)
..++.....-+ .=..+.++++....+..+ .....+..+..+|..+...|++.+|..++-.. .+...
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 44444422111 235777888888766543 22445678889999999999999999877311 12222
Q ss_pred HcCCCCCHHHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHH
Q 017109 281 ENGEGDSMTCIRRLRYLA-QTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 281 ~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
+.. ...+.....+...+ ..|...|+...|...++...+..
T Consensus 178 ~~~-~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 178 QVD-DIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HTT-CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred hcC-CCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 210 02333343333333 35678899999999999877665
No 265
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=89.20 E-value=6.4 Score=30.42 Aligned_cols=152 Identities=9% Similarity=-0.072 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCH----hHHHHH-----------HHHHHHHHH-hcCHhH--------
Q 017109 128 DSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDP----HVASAC-----------NNLAELYRV-KKAFDK-------- 183 (377)
Q Consensus 128 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~-----------~~la~~~~~-~g~~~~-------- 183 (377)
.++.+.-+.++|++...+.++..+.+.....+-+. ....++ ..+..+-.. .|+-..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqkek~~~~~~~~i~~yr 90 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQLNNDELVKICSEYV 90 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57788888999999999999988721111001011 111222 222222222 132111
Q ss_pred ------HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017109 184 ------AEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYL-----VQRKLEDACTYYERALKIKGRVLGHGNIDYADTM 252 (377)
Q Consensus 184 ------A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (377)
=...+...+.+..+..-|........+-..|..|. ..|+.+.|...|+.|.++..+...+.||......
T Consensus 91 ~kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLa 170 (227)
T 2o8p_A 91 FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFI 170 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHH
Confidence 11223344444444444433222333334455544 3566889999999999999876777777665555
Q ss_pred HHHHHH-HHHcCChhhHHHHHHHHHHHH
Q 017109 253 YHLATV-LYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 253 ~~la~~-~~~~g~~~~A~~~~~~al~~~ 279 (377)
.+.+.. |.-.+++++|..+.++++.+.
T Consensus 171 LNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 171 QNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566555 446899999999999998764
No 266
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=88.64 E-value=7.8 Score=30.73 Aligned_cols=184 Identities=10% Similarity=-0.024 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
-+..++.+..+.++|++...+.+++.+.- ........-.+.+..+|-. .|....+...+.. ++.-....+ +.
T Consensus 10 ~~v~~AkLaeqaeRyddm~~~mk~v~~~~-----~~~eLt~EERnLLSvaYKNvig~rR~swRiiss-ieqke~~k~-~~ 82 (260)
T 1o9d_A 10 ENVYMAKLAEQAERYEEMVEFMEKVSNSL-----GSEELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRG-NE 82 (260)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTC-----SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTT-CH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-----CCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHhhccC-cH
Confidence 34567888888999999999999988741 0011223333444444432 1223333333322 111111101 11
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--CCCh-hHHHHHHHHHHHHHHc-----C-----ChhhHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG--HGNI-DYADTMYHLATVLYLQ-----G-----KENDSEA 270 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~-~~~~~~~~la~~~~~~-----g-----~~~~A~~ 270 (377)
. ...+..-|.. .=-.+=..++...+.+..+..- ..++ .....+-..|..|... | -.+.|..
T Consensus 83 ~-----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~ 156 (260)
T 1o9d_A 83 E-----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT 156 (260)
T ss_dssp H-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHH
Confidence 1 1111111111 1112223344445554433211 1111 1222233345554432 1 1357888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHH
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYVK-ANRLTDAETVQRKILHIM 321 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 321 (377)
.|++|.++......+.+|.......+.+..|.. .|++++|..+.+++..-.
T Consensus 157 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 157 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 999999999876777888877777777777665 699999998888776543
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.20 E-value=10 Score=31.48 Aligned_cols=182 Identities=9% Similarity=-0.020 Sum_probs=98.9
Q ss_pred HHcCCH---HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 017109 134 FLQGKL---AEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAF 210 (377)
Q Consensus 134 ~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 210 (377)
...|+| =+|.+.++.....+.+. .........++.=+..+...|+...|.++..-.++.+.+..-+-+ ....
T Consensus 23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~--k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~~ 97 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQETRLVAARYSKQ--GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GASR 97 (336)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHH
T ss_pred HhCCCCccccHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHH
Confidence 344555 45555554444333322 223334445555555666666666666666666666555432222 1333
Q ss_pred HHHHHHHHHccCH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHH--------HHHHHHHH
Q 017109 211 HNLGQFYLVQRKL-EDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFL--------ESIRILEE 281 (377)
Q Consensus 211 ~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~~~ 281 (377)
..+..++.....- ..=..+.++++....+.. ......+.....+|..+.+.+++.+|..++- ...++.-+
T Consensus 98 ~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4444444443321 122557788888877643 2234456778889999999999999988762 11111111
Q ss_pred cCCCCCHHHHHHHH-HHHHHHHHhCChhHHHHHHHHHHHHH
Q 017109 282 NGEGDSMTCIRRLR-YLAQTYVKANRLTDAETVQRKILHIM 321 (377)
Q Consensus 282 ~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~ 321 (377)
......+.....+. .....|...++...|...+....+..
T Consensus 177 w~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 177 WYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 10011122222232 33445778899999999888877655
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.27 E-value=11 Score=30.01 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=79.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 017109 132 DYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFH 211 (377)
Q Consensus 132 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 211 (377)
.....|++++|+......++. .|..+.....+..++.-.|+++.|.+-++.+.++ .|+....+..|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l-----~p~~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhhHHHHHHH
Confidence 356789999999999988875 7888899999999999999999999999998887 222222222222
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHH--HhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 017109 212 NLGQFYLVQRKLEDACTYYERALKIKG--RVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEEN 282 (377)
Q Consensus 212 ~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (377)
.+-. |+..=.+.+.-.. ...+. +........-+......|+.++|...-.++++..+..
T Consensus 73 ~lI~----------aE~~R~~vfaG~~~P~~~g~--~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 73 HLVK----------AAQARKDFAQGAATAKVLGE--NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHH----------HHHHHHHHTTSCCCEECCCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHH----------HHHHHHHHHcCCCCCCCCCC--CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 2111 1111111111000 01111 2223334445566677899999999999998875443
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.18 E-value=9.1 Score=30.54 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=79.1
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017109 216 FYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLR 295 (377)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (377)
...+.|+.++|+......++.. |..+.....+..++.-.|+++.|..-++.+.++.+. ....+..|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~-----~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-----YLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-----GHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-----hhHHHHHHH
Confidence 3567789999999998887763 777788888899999999999999999988887322 112222222
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHH--HhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCC
Q 017109 296 YLAQTYVKANRLTDAETVQRKILHIM--ESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMP 368 (377)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 368 (377)
.+-.+-. .=.+++.-- ....+ .+........-+......|+.++|...-.++++..+.+.|
T Consensus 73 ~lI~aE~----------~R~~vfaG~~~P~~~g--~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 73 HLVKAAQ----------ARKDFAQGAATAKVLG--ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHH----------HHHHHTTSCCCEECCC--SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHH----------HHHHHHcCCCCCCCCC--CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 2211111 111111100 00111 1212233334455566789999999999999987665544
No 270
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.16 E-value=18 Score=34.78 Aligned_cols=196 Identities=14% Similarity=0.076 Sum_probs=100.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHH
Q 017109 136 QGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGP--EDIRIGVAFHNL 213 (377)
Q Consensus 136 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l 213 (377)
.|+.++++..+.+.+.. ....+......+++.+|.++...++ ++..++...+.......+. .......+...+
T Consensus 387 ~g~~~~gl~~L~~yL~~---~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPG---SRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp SSCTTTHHHHHTTTSTT---SCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhccc---cCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 45555555555443320 0012223457788888888877664 6777777666542100010 012223456678
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 214 GQFYLVQRKLEDACTYYERALKIKGRVLGHGNID-YADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 214 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
|.++...++ +++.+.+...+.. ++.. ...+-..+|.++...|+-+-...++.-+.+ . .+....
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~d-------d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e----~---~~e~vr- 525 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYN-------DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE----T---QHGNIT- 525 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHT-------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----C---SCHHHH-
T ss_pred HHHhcCCCC-HHHHHHHHHHHhc-------CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc----c---CcHHHH-
Confidence 888776666 3455555555432 1121 124566788888888876554444444332 2 122222
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLD-TVIAAEGLALTLQSTGSLMEAQELFERC 359 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 359 (377)
-...+|......|+.+.+....+..... .++. ...+...+|..|...|+...-...+..+
T Consensus 526 R~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~ 586 (963)
T 4ady_A 526 RGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA 586 (963)
T ss_dssp HHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 2233444444567777666655543321 1222 2334456677777888865444344443
No 271
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=86.09 E-value=11 Score=31.23 Aligned_cols=71 Identities=8% Similarity=-0.068 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 291 IRRLRYLAQTYVKAN--RLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 291 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
..++.+||.+-...- ....++.+|.+++...+..++..| ..-+..+|-.+.+.+++.+|+..+.++-....
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 344566666654332 223489999999999999888777 46677788899999999999998887766543
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.95 E-value=13 Score=30.49 Aligned_cols=152 Identities=8% Similarity=-0.113 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChh-hHHHHHHHHHHHHHHcCCC
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKEN-DSEALFLESIRILEENGEG 285 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~ 285 (377)
...+..-+..+.+.|++..|.+...-.++...+...+. .......+..++.....-+ .=..+.+++++-..+.++.
T Consensus 53 idlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~---~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~ 129 (312)
T 2wpv_A 53 IELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV---DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY 129 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC---SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC
Confidence 33444445555566666666666666666655543321 1223344444444432222 3356777888777766431
Q ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHHHH------------HHHHHHhccCCCChhHHHHHHHHH-HHHHHcCCHHHH
Q 017109 286 DSMTCIRRLRYLAQTYVKANRLTDAETVQRK------------ILHIMESSKGWNSLDTVIAAEGLA-LTLQSTGSLMEA 352 (377)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A 352 (377)
.......+..+|..|...|++.+|..+|-. ..+...... ...+.....+...+ ..|...|+...|
T Consensus 130 -~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~-~~~~~e~dlf~~RaVL~yL~l~n~~~A 207 (312)
T 2wpv_A 130 -KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVD-DIEDSTVAEFFSRLVFNYLFISNISFA 207 (312)
T ss_dssp -TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHTTBHHHH
T ss_pred -CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHhcCHHHH
Confidence 223345677889999999999999887731 112222210 02343344443333 356788999999
Q ss_pred HHHHHHHHHHH
Q 017109 353 QELFERCLEAR 363 (377)
Q Consensus 353 ~~~~~~al~~~ 363 (377)
...+....+..
T Consensus 208 ~~~~~~f~~~~ 218 (312)
T 2wpv_A 208 HESKDIFLERF 218 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877655
No 273
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.76 E-value=26 Score=33.77 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=91.0
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC--CCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE--RDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
+.....-+++.+|.++...+ +++..++...+.......+. .......+...||.++...++- ++.+.+...+.-
T Consensus 408 ~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~d- 483 (963)
T 4ady_A 408 SRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLYN- 483 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhc-
Confidence 34456677888888777666 46777777766542100000 0123345667888888877763 455555555542
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 017109 196 QESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLES 275 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (377)
++......+-..+|.++...|+-+-....+..+.+. . +. ...-...+|..+...|+.+.+....+..
T Consensus 484 -----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~------~-~e-~vrR~aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 484 -----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET------Q-HG-NITRGLAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC------S-CH-HHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc------C-cH-HHHHHHHHHHHhhhCCChHHHHHHHHHH
Confidence 111112246667888888888876555555544321 1 12 2222233444444567766665554443
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 017109 276 IRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQR 315 (377)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (377)
.. . .+......+...+|..|...|+...-..++.
T Consensus 551 ~~----~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~ 584 (963)
T 4ady_A 551 LA----S--DESLLRYGGAFTIALAYAGTGNNSAVKRLLH 584 (963)
T ss_dssp HH----C--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred Hh----C--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 32 1 1222233334455666666666543333443
No 274
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=83.36 E-value=5.9 Score=25.37 Aligned_cols=39 Identities=15% Similarity=-0.021 Sum_probs=31.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
.+...+..+...+..+...|+|++|+++.+++.....+.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 334457778889999999999999999999998765544
No 275
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=82.11 E-value=5.2 Score=31.76 Aligned_cols=74 Identities=16% Similarity=0.088 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhhC--CCCCHhHHHHHHHHHHHHH-HhcCHhHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGK----------LAEAEKLFLSALQEAKEGF--GERDPHVASACNNLAELYR-VKKAFDKAEPL 187 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 187 (377)
..+-.+-..|..|...-. .+.|...|+.|.+++.... ++.+|.......+.+..|+ ..+++++|...
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~l 219 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKF 219 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445556777765422 4678899999999998777 7888888777777777766 57999999999
Q ss_pred HHHHHHH
Q 017109 188 YLEAIKI 194 (377)
Q Consensus 188 ~~~al~~ 194 (377)
.++|.+-
T Consensus 220 Ak~AFde 226 (268)
T 3efz_A 220 ANRAIQA 226 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999876
No 276
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=82.01 E-value=20 Score=30.53 Aligned_cols=69 Identities=16% Similarity=-0.013 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHh---CChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 292 RRLRYLAQTYVKA---NRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 292 ~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.++.+||.+-... |+ ..++.+|.+++...+..++..| ..-|..+|-.+.+.+++.+|+..+..+-....
T Consensus 278 mALgnLgDLEe~~pt~gr-~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 278 MALGNLADLEELEPTPGR-PDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp HHHHHHHHHHHHSCCTTC-CCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhhcchhhHhhcCCCCCC-CCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 3445555554432 22 2488999999999998888777 46677788899999999999988877766543
No 277
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=81.54 E-value=17 Score=28.34 Aligned_cols=182 Identities=11% Similarity=0.019 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCC
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGN 245 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 245 (377)
-+..++.+..+.++|++...+.++..+. ++ .....=.+.++..|-. .|....+...+....+.....+++.+
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~-----~~--eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~ 82 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEK-----GE--ELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEK 82 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-----CC--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHH
Confidence 4556788889999999999999888765 21 1112333344444422 12223333333221111100111111
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHH-----hCC-----hhHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGE---GDSMTCIRRLRYLAQTYVK-----ANR-----LTDAET 312 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 312 (377)
.....-+.. .+- .+=...+...+.+...... .+.......+...|..|.- .|+ .+.|..
T Consensus 83 ~~~i~~yr~--kie------~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~ 154 (236)
T 3iqu_A 83 GPEVREYRE--KVE------TELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARS 154 (236)
T ss_dssp CSHHHHHHH--HHH------HHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHH--HHH------HHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence 111111111 110 1122333444444332210 0112222223344555543 233 367889
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 017109 313 VQRKILHIMESSKGWNSLDTVIAAEGLALTLQ-STGSLMEAQELFERCLEAR 363 (377)
Q Consensus 313 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 363 (377)
.|+.|.++......+.||.......+.+..|. -.++.++|....+++++-.
T Consensus 155 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 155 AYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999988889999987777777776655 5699999999888877643
No 278
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=80.60 E-value=8.6 Score=24.33 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHH-HHHHHHH
Q 017109 121 SKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASAC-NNLAELY 175 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 175 (377)
..++....-|.-++..++|.+|..+++++... .+++..-.++ +.++.|-
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999987 5677776665 5566553
No 279
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=80.48 E-value=23 Score=30.16 Aligned_cols=70 Identities=14% Similarity=-0.056 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 292 RRLRYLAQTYVKAN--RLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 292 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
.++.+||++-...- ..+.++.+|.+++...+..+...| ...|..+|-.+.+.+++.+|...+.++-....
T Consensus 263 mALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~ 334 (489)
T 4gq4_A 263 MALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQ 334 (489)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhh
Confidence 34555555544322 223477899999999998887777 56777889999999999999999888766544
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.07 E-value=22 Score=32.59 Aligned_cols=128 Identities=6% Similarity=0.027 Sum_probs=76.2
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017109 171 LAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYAD 250 (377)
Q Consensus 171 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 250 (377)
.+.......+.+.|...+.+..... ..+..........++.-....+...++...+.+.... ..+.....
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~e 289 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSLIE 289 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhcc----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCChHHHH
Confidence 3444555567788887777654421 1123333444555555555556455666666654321 11222222
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 017109 251 TMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILH 319 (377)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 319 (377)
..+......|+++.|..++...-. .........+.+|..+...|+.++|..+|+++..
T Consensus 290 ---~~~r~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 ---RRVRMALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp ---HHHHHHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 223344567999999988865422 1223345578899999999999999999988764
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.82 E-value=19 Score=27.26 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=55.7
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+++....+|...+..+ ..++..++...|...... +-....+..|...|..+...|++.+|.+.|+.+++.
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK------GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH------TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6677888888887765 344467888888877654 224567888899999999999999999999999985
No 282
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=78.51 E-value=23 Score=28.11 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHHc-----c-----CHHHHHHHHHHHHHHHHHhc--CCCChhHH
Q 017109 184 AEPLYLEAIKILQESFGPE--DIRIGVAFHNLGQFYLVQ-----R-----KLEDACTYYERALKIKGRVL--GHGNIDYA 249 (377)
Q Consensus 184 A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 249 (377)
=...+..++.+..+..-|. ++.....+-..|..|... | -.+.|...|++|.++..+.. .+.||...
T Consensus 117 L~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRL 196 (268)
T 3efz_A 117 ILLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYL 196 (268)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3445566666665543322 222222333446666543 2 14678899999999998777 78888877
Q ss_pred HHHHHHHHHHH-HcCChhhHHHHHHHHHHH
Q 017109 250 DTMYHLATVLY-LQGKENDSEALFLESIRI 278 (377)
Q Consensus 250 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 278 (377)
....+.+..|+ -.+++++|..+.+++++-
T Consensus 197 GLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 197 ATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777766 479999999999998875
No 283
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=77.42 E-value=8.2 Score=24.71 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
.+..+...+..+...|+|++|+++.+++.......
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 46677788999999999999999999999876544
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=76.19 E-value=21 Score=26.29 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH----------H
Q 017109 127 TDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKIL----------Q 196 (377)
Q Consensus 127 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~ 196 (377)
..++..+...|.|..++-.+.. -..+.+.+.-+.||....++..|+..+++.++-- -
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred hhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 3467778889999887765432 2345666777889999999999999999988320 0
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 197 ESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
+..--+..+.-..+..+|.++...|+.++|+.++......
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 0111112233457888999999999999999999988765
No 285
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=74.62 E-value=36 Score=28.38 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHhcCH--hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 163 HVASACNNLAELYRVKKAF--DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
....++.+||.+-...--. ..++..|.+++...+..++..+ ..-|..+|..+++.+++.+|+..+-++-...+.
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 4456666777665543322 3389999999999998877555 356888999999999999999999998877654
No 286
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=74.12 E-value=23 Score=30.96 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCC---C-----hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH--HcCCCCCHHHH
Q 017109 222 KLEDACTYYERALKIKGRVLGHG---N-----IDYADTMYHLATVLYLQGKENDSEALFLESIRILE--ENGEGDSMTCI 291 (377)
Q Consensus 222 ~~~~A~~~~~~al~~~~~~~~~~---~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~ 291 (377)
..+++...+.++...+.....++ + .......+.+-.+|.+.|+..-+...++..-.... ....-.....+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 45566666677666643211110 1 11234455677899999999999888865433210 00000123567
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHH-HHh
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHI-MES 323 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~ 323 (377)
...+.+|.++...+++.+|.+.+..|+.. +..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 77889999999999999999999999998 653
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.65 E-value=24 Score=25.76 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcC
Q 017109 269 EALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTG 347 (377)
Q Consensus 269 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 347 (377)
..++++++..+... .-.+++....++...+... ++ +.++|..... ...|. ..+..|...|.++...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~---~~IG~---~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHN---QGIGV---SLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHH---TTSST---TBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHH---CCcch---hhHHHHHHHHHHHHHcC
Confidence 45667776665332 1235677777777777653 33 4455554332 22222 33778888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 017109 348 SLMEAQELFERCLE 361 (377)
Q Consensus 348 ~~~~A~~~~~~al~ 361 (377)
++.+|...|+.+++
T Consensus 111 ~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 111 NFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998887
No 288
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=73.22 E-value=33 Score=27.22 Aligned_cols=187 Identities=7% Similarity=-0.030 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCC
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPE 202 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 202 (377)
.-+..++.+..+.++|++...+.++..+.-. . .......-.+.++.+|-. .|....+...+.. ++.-....+
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~-~---~~eLt~EERnLLSvAyKNvIg~rR~swRiiss-ieqke~~k~-- 101 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQ-E---SEELTVEERNLLSVAYKNAVGSRRSSWRIISS-VEQKEHSRN-- 101 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCC-C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-C---CCCCCHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHhhccC--
Confidence 3345678888889999999999999887410 0 011223333444444432 1222233333322 111111101
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHHcC----------ChhhHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLGH--GNID-YADTMYHLATVLYLQG----------KENDSE 269 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~-~~~~~~~la~~~~~~g----------~~~~A~ 269 (377)
... ...+..-|. ..=-.+=...+...+.+..+..-+ .++. ....+-..|..|...- -.+.|.
T Consensus 102 ~~~----~~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~ 176 (260)
T 2npm_A 102 AED----ASKMCGKYR-SKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDAL 176 (260)
T ss_dssp CHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHH----HHHHHHHHH-HHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence 110 111111111 111122233344444444332111 1111 1222233444443221 235788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHh
Q 017109 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK-ANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 323 (377)
..|++|.++. ....+.+|.......+.+..|.. .|++++|..+.+++..-.-.
T Consensus 177 ~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 230 (260)
T 2npm_A 177 KAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8999999999 66677788877777777777665 79999999999888876533
No 289
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=72.61 E-value=5.7 Score=24.72 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
...+|+-|...|+|+.|+.+|+.+++...+.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999876554
No 290
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=70.48 E-value=35 Score=26.38 Aligned_cols=181 Identities=10% Similarity=0.030 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017109 170 NLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV-QRKLEDACTYYERALKIKGRVLGHGNIDY 248 (377)
Q Consensus 170 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (377)
.++.+..+.++|++...+.+++.+.+... ++. ....-.+.++.+|-. .|....+...+.... ++..+ +..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~-~~e--Lt~EERnLLSvAYKNvig~rR~swRiissiE---qkek~--~~~- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE-NSE--FDDEERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLN--NDE- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCS--CHH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc-CCC--CCHHHHHHHHHHHHHhhcccHHHHHHHHHHH---HHHcC--CHH-
Confidence 67888889999999999999988732111 111 112223333443321 122222222222211 11101 111
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-----HhCChhHHHHHHHHHHHHHHh
Q 017109 249 ADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYV-----KANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~ 323 (377)
...+..-|... --.+=...+...+.+......+........+-..|..|. ..|+.+.|...|+.|.++...
T Consensus 82 ---~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~ 157 (227)
T 2o8p_A 82 ---LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCE 157 (227)
T ss_dssp ---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHh
Confidence 11122222111 112334456667777766654443222333334455544 346788999999999999988
Q ss_pred ccCCCChhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 017109 324 SKGWNSLDTVIAAEGLALT-LQSTGSLMEAQELFERCLEAR 363 (377)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 363 (377)
...+.||.......+.+.. |.-.++.++|....++++++.
T Consensus 158 ~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 158 HPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp CGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 7888888766666666655 456799999999999998764
No 291
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=70.46 E-value=19 Score=31.47 Aligned_cols=74 Identities=7% Similarity=-0.021 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHH--hccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHh
Q 017109 292 RRLRYLAQTYVKANRLTDAETVQRKILHIME--SSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLEA-RKK 365 (377)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~ 365 (377)
.....+-.+|++.|+..-+...++..-.... ........+.+...+.+|+++...+++.+|.+.+..|+.. ++.
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 3445677899999999999888865433210 0001112346778889999999999999999999999998 664
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.64 E-value=38 Score=25.66 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccC
Q 017109 144 KLFLSALQEAKEGF-GERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRK 222 (377)
Q Consensus 144 ~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 222 (377)
.++++++..+.... =.+++....++...+..+ ..++..++...|.-.... - -....+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~---~---IG~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK---G---IGTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH---T---SSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC---C---CcHHHHHHHHHHHHHHHHcCC
Confidence 57778777654321 135677888888888776 234466777777776553 1 123346788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 017109 223 LEDACTYYERALKIK 237 (377)
Q Consensus 223 ~~~A~~~~~~al~~~ 237 (377)
+.+|...|+.+++..
T Consensus 131 ~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 131 FLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998763
No 293
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=67.43 E-value=59 Score=27.80 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHhcCH--hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 163 HVASACNNLAELYRVKKAF--DKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
....++.+||.+-...--. ..++.+|.+++...+..++..+ ..-|..+|..+++.+++.+|+..+-.+-...+.
T Consensus 275 rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 275 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 3455666666655443222 2589999999999998876555 367888999999999999999999988877643
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=67.10 E-value=21 Score=26.07 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcc
Q 017109 143 EKLFLSALQEAKEG-FGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQR 221 (377)
Q Consensus 143 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 221 (377)
..++++++..+... .=.+++....++...+... +.+..+|...... .--...+..|...|..+...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~------~IG~~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQ------GIGVSLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHT------TSSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHC------CcchhhHHHHHHHHHHHHHcC
Confidence 44566666554221 0134677788888777664 3355555554432 123344678889999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 017109 222 KLEDACTYYERALKIK 237 (377)
Q Consensus 222 ~~~~A~~~~~~al~~~ 237 (377)
++.+|.++|+.+++..
T Consensus 111 ~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 111 NFRKADAIFQEGIQQK 126 (164)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999998763
No 295
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=66.97 E-value=10 Score=23.57 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 294 LRYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
...+|+=|...|+|+.|+.+|+.+++...+.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999999876554
No 296
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.15 E-value=17 Score=22.91 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=22.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
+...|.-.-..|++++|+.+|.++++.+..
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344455567889999999999999988643
No 297
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.62 E-value=19 Score=22.70 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 253 YHLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
...|.-.-..|++++|+.+|.++++.+..
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34455567889999999999999887543
No 298
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=65.14 E-value=12 Score=26.64 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQV 374 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 374 (377)
+..+...|.+|...|+.+.|.-.|-+...+.-+.++ .||+.
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R~~~L~~e~Ip-kHpdy 80 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLP-KHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGG-GSTTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcc-cCccc
Confidence 566677899999999999999999999999876554 57764
No 299
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=64.28 E-value=57 Score=26.51 Aligned_cols=157 Identities=6% Similarity=-0.035 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhcC---HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHH
Q 017109 164 VASACNNLAELYRVKKA---FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE--DACTYYERALKIKG 238 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~ 238 (377)
....+..-|.+-...|- -+-|.+.+.+|+.+++.... ++.....+...+...+.....+. .-.....++.....
T Consensus 98 alrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~Is-dSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~as 176 (298)
T 2r17_C 98 PLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEIS-DSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAAS 176 (298)
T ss_dssp HHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHH
Confidence 34455555555555555 67788999999999998643 44444555555555555655442 22222333333333
Q ss_pred HhcCCCChhHHHHHHHHHHHHHH----------cCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHHHHhC
Q 017109 239 RVLGHGNIDYADTMYHLATVLYL----------QGKENDSEALFLESIRILEENGEGDSMTCIRRL---RYLAQTYVKAN 305 (377)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~~la~~~~~~g 305 (377)
++... |+.+.+...-+.++.. ..+.+..++++++++++..... +.......+ .+.-..|+..|
T Consensus 177 kLLKK--~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~--d~~~~v~LfveILn~ylyff~~g 252 (298)
T 2r17_C 177 KLLKK--PDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM--DPSLQVQLFIEILNRYIYFYEKE 252 (298)
T ss_dssp TCSSH--HHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCc--HHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHhhhhCC
Confidence 33333 6777777766766653 1466789999999999988874 222222222 23344566777
Q ss_pred ChhHHHHHHHHHHHHHHhcc
Q 017109 306 RLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 306 ~~~~A~~~~~~al~~~~~~~ 325 (377)
...-..++....+++.+...
T Consensus 253 ~~~Vt~~~in~LI~lI~~~l 272 (298)
T 2r17_C 253 NDAVTIQVLNQLIQKIREDL 272 (298)
T ss_dssp CTTSCHHHHHHHHHHHHTTT
T ss_pred CCcccHHHHHHHHHHHHHHh
Confidence 76666777888887776643
No 300
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=62.23 E-value=75 Score=27.20 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHhcC--HhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 163 HVASACNNLAELYRVKKA--FDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 163 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
....++.+||.+-...-. ...++.+|++|+...+..+...+ ...|..+|-.+.+.+++.+|+..+-++-....+
T Consensus 260 ~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 345566666665543322 23578899999999998876555 467888999999999999999999998777644
No 301
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=61.95 E-value=22 Score=22.34 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=21.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 212 NLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 212 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
..|.-.-..|++++|+.+|.++++.+..
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3444556789999999999999988643
No 302
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=60.73 E-value=26 Score=22.04 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=21.3
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 017109 254 HLATVLYLQGKENDSEALFLESIRILEE 281 (377)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (377)
..|.-.-..|++++|+.+|.++++.+..
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3445556789999999999999887543
No 303
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=59.66 E-value=64 Score=25.57 Aligned_cols=181 Identities=9% Similarity=-0.072 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
-+..++.+.-+.++|++...+.++..+. +......=.+.++.+|-. .|....+...+... +.-+...+ .
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~-------~~eLt~EERNLLSvAYKNvIgarR~swRiissi-eqkee~~g--~ 102 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGM-------DVELTVEERNLLSVAYKNVIGARRASWRIISSI-EQKEENKG--G 102 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTT--C
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH-HHhhhccc--c
Confidence 3456778888899999999999888764 112233344445555532 22223333332221 11111111 1
Q ss_pred hhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHHHhcC--CCChh-HHHHHHHHHHHHHHc-----C-----ChhhHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKL-EDACTYYERALKIKGRVLG--HGNID-YADTMYHLATVLYLQ-----G-----KENDSE 269 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~--~~~~~-~~~~~~~la~~~~~~-----g-----~~~~A~ 269 (377)
.. ...+..-|. .+. .+=...+...+.+..+..- ...+. ....+-..|..|... | -.+.|.
T Consensus 103 ~~----~~~~i~~yr--~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~ 176 (261)
T 3ubw_A 103 ED----KLKMIREYR--QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSL 176 (261)
T ss_dssp HH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHH
Confidence 10 111111111 111 1222334444444432211 11121 122223345554432 1 135788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHH
Q 017109 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK-ANRLTDAETVQRKILHIM 321 (377)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 321 (377)
..|++|.++......+.+|.......+.+..|.. .+++++|..+.+++..-.
T Consensus 177 ~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 177 VAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999998877777888887777777777665 699999999988887654
No 304
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=59.50 E-value=48 Score=24.06 Aligned_cols=70 Identities=10% Similarity=0.019 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHH---HHHHHHHhcCHhHHHHHHHHHHHHHHHh
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGE-RDPHVASACNN---LAELYRVKKAFDKAEPLYLEAIKILQES 198 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~ 198 (377)
-+..|..++..|+|-+|-+.++...... .++ +.......+.. .|..+...|+..-|...+.+++..+...
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~---~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNY---GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTT---CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 3456777888899999999999887542 111 01223334444 4556677899999999999999987654
No 305
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=59.44 E-value=31 Score=26.22 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhH
Q 017109 119 HTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDK 183 (377)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 183 (377)
..+.+...+.+|.+++..++|.+|.+.+..|+..+.+. .......++..+--+-...|++..
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~---~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS---SQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh---HHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34567888999999999999999999999999874321 123344555556556666777543
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.99 E-value=31 Score=25.00 Aligned_cols=72 Identities=6% Similarity=-0.084 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHH-HHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAF-HNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+.-+..++..|+|-+|-+.++.................+.+. ...|......|+...|...+.+++......
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 455667777799999999998887642110000112233444 455667778899999999999999987543
No 307
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.68 E-value=37 Score=25.78 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHccCHH
Q 017109 162 PHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQRKLE 224 (377)
Q Consensus 162 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 224 (377)
...+...+.+|.++...++|.+|.+.+.+|+..+.+. .......++..+--+-.-+|+..
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~---~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS---SQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh---HHHHHHHHHHHHHHHHHHcCCCC
Confidence 3567788999999999999999999999999985432 12223344444544445567654
No 308
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=57.53 E-value=24 Score=25.08 Aligned_cols=39 Identities=8% Similarity=-0.011 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCCc
Q 017109 333 VIAAEGLALTLQSTGSLMEAQELFERCLEARKKLMPQDHIQ 373 (377)
Q Consensus 333 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 373 (377)
+..+...|.+|...|+.+.|.-+|-+.+.+...+ +.||+
T Consensus 42 a~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpd 80 (144)
T 2a9u_A 42 ALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPD 80 (144)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcc
Confidence 5566677999999999999999999999998544 46665
No 309
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=56.24 E-value=1e+02 Score=27.03 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCC
Q 017109 266 NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANR 306 (377)
Q Consensus 266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (377)
++|+++|+++++.+++....+.+.....+..++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 34556666666666665555666666556666555544444
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.68 E-value=1.5e+02 Score=28.78 Aligned_cols=70 Identities=11% Similarity=-0.017 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHH-----------------HHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHH
Q 017109 250 DTMYHLATVLYLQGKENDSEALFLESIRIL-----------------EENGEGDSMTCIRRLRYLAQTYVKANRLTDAET 312 (377)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (377)
...+.+|.++...|++++|..+|+++-.-. .... ........|..+..++...+-++-+++
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~ 918 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALE 918 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 345789999999999999999998764211 1110 111233466777888888888888888
Q ss_pred HHHHHHHHH
Q 017109 313 VQRKILHIM 321 (377)
Q Consensus 313 ~~~~al~~~ 321 (377)
..+.|+...
T Consensus 919 fA~lAI~~~ 927 (950)
T 4gq2_M 919 FSLLADASK 927 (950)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 888887653
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.46 E-value=86 Score=30.54 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-------------hc--CCCChhHHHHHHHHHHHHHHcCChhhHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGR-------------VL--GHGNIDYADTMYHLATVLYLQGKENDSEALFL 273 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (377)
..+.+|.++...|++++|..+|++|-.-... .. .+........|...+.++...+-++-++...+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4478999999999999999999986421100 00 00001122345555666666666666666666
Q ss_pred HHHHH
Q 017109 274 ESIRI 278 (377)
Q Consensus 274 ~al~~ 278 (377)
.|++.
T Consensus 922 lAI~~ 926 (950)
T 4gq2_M 922 LADAS 926 (950)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 66654
No 312
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=54.44 E-value=38 Score=21.32 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 017109 209 AFHNLGQFYLVQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 209 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 239 (377)
.+...|.-.-..|++++|+.+|..+++.+..
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444455556789999999999999987643
No 313
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.42 E-value=62 Score=23.20 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 017109 142 AEKLFLSALQEAKEG-FGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLVQ 220 (377)
Q Consensus 142 A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 220 (377)
=..++++++...... .=.+++....++...+... +++...|.-.... .-....+..|...|..+...
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~ 114 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNH------GIGTLSSPLYIAWAGHLEAQ 114 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTT------TTTTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHc
Confidence 445666666655321 1134677777777777653 3356666554432 11234467888999999999
Q ss_pred cCHHHHHHHHHHHHHH
Q 017109 221 RKLEDACTYYERALKI 236 (377)
Q Consensus 221 g~~~~A~~~~~~al~~ 236 (377)
|++.+|...|+.+++.
T Consensus 115 g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 115 GELQHASAVLQRGIQN 130 (152)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999876
No 314
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=51.93 E-value=38 Score=20.68 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 168 CNNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 168 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
-..+|..+...|++++|..++-+|+..+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 3568999999999999999999999873
No 315
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=51.83 E-value=61 Score=22.96 Aligned_cols=53 Identities=26% Similarity=0.208 Sum_probs=37.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 134 FLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 134 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
..+|+-++-.+.+...+. +.+..+..+..+|.+|...|+..+|.+.+.+|.+.
T Consensus 102 v~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445555554444443322 24455778899999999999999999999998874
No 316
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=50.67 E-value=63 Score=28.30 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCH
Q 017109 139 LAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAF 181 (377)
Q Consensus 139 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 181 (377)
-++|++.|++|++..++....+++.....+..++..|...|+|
T Consensus 448 A~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 448 AQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 3578899999999999988788888888888877766555543
No 317
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=50.34 E-value=28 Score=22.60 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHH
Q 017109 169 NNLAELYRVKKAFDKAEPLYLEAIKIL 195 (377)
Q Consensus 169 ~~la~~~~~~g~~~~A~~~~~~al~~~ 195 (377)
..+|..+...|+++.|..++-+|+..+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 468899999999999999999998875
No 318
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=49.71 E-value=46 Score=20.91 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKE 155 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 155 (377)
.+..+...|.-.-..|++++|+.+|..+++.+..
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444555666677889999999999999987544
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.64 E-value=68 Score=24.72 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=48.4
Q ss_pred chhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Q 017109 118 IHTSKWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKI 194 (377)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 194 (377)
+++....+|...+.. . +++..+|...... +-....+..|...|..+...|++.+|...|+.+++.
T Consensus 115 nD~RyLklWl~Ya~~---~---~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 115 DDVRYLRIWMQYVNY---I---DEPVELFSFLAHH------HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp TCHHHHHHHHHHHTT---C---SCHHHHHHHHHHT------TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc---c---CCHHHHHHHHHHC------CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 566777777777663 1 3556666665543 224456788889999999999999999999999986
No 320
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=49.58 E-value=30 Score=30.25 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 017109 245 NIDYADTMYHLATVLYLQGKENDSEALFLESIRIL 279 (377)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (377)
......++..+|++|+..|++++|..+.++++...
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 34566788899999999999999999999998753
No 321
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=49.45 E-value=91 Score=24.28 Aligned_cols=58 Identities=9% Similarity=-0.034 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHh
Q 017109 266 NDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK-ANRLTDAETVQRKILHIMES 323 (377)
Q Consensus 266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 323 (377)
+.|...|++|.++......+.+|.......+.+..|.. .|++++|....+++..-.-.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 57888999999999876777888877777777776665 79999999998888765433
No 322
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=49.11 E-value=48 Score=20.98 Aligned_cols=35 Identities=3% Similarity=-0.069 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
.+..+...|.-.-..|++++|+.+|..+++.+...
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34456666777788999999999999999876544
No 323
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=48.75 E-value=38 Score=20.71 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQE 152 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 152 (377)
...+|..+...|++++|..+|-+|+..
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346888999999999999999999876
No 324
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=48.62 E-value=36 Score=29.69 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=30.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
......+...+|++|.-+|++++|..+.++++....
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~~ 221 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKDAD 221 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCCC
Confidence 344567888899999999999999999999997643
No 325
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.37 E-value=76 Score=22.75 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 268 SEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 268 A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
=..++++++..+... .-.+++....++...+... +++.+.|.-... ...|. ..+..|...|..+...
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~---~~IG~---~~AlfYe~wA~~lE~~ 114 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYN---HGIGT---LSSPLYIAWAGHLEAQ 114 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHT---TTTTT---TBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHH---CCCcH---HHHHHHHHHHHHHHHc
Confidence 446667777666432 2235677777777666542 346666655432 22222 3478888999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 017109 347 GSLMEAQELFERCLE 361 (377)
Q Consensus 347 g~~~~A~~~~~~al~ 361 (377)
|++.+|...|+..++
T Consensus 115 g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 115 GELQHASAVLQRGIQ 129 (152)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999887
No 326
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=47.14 E-value=1e+02 Score=24.22 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCch
Q 017109 126 FTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPEDI 204 (377)
Q Consensus 126 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 204 (377)
+..++.+.-+.++|++...+.++..+. +......=.+.++.+|-. .|....+...+.....- ....+.+ .
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~-------~~eLt~EERnLLSvAYKNvig~rR~swRiissieqk-e~~~~~~-~ 77 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTEL-------NEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQK-TSADGNE-K 77 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC---CC-C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-hhccCCH-H
Confidence 456788888999999999998888764 112233344455555532 23333333333221111 1001111 1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--CCCh---hHHHHHHHHHHHHHHc-----C-----ChhhHH
Q 017109 205 RIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG--HGNI---DYADTMYHLATVLYLQ-----G-----KENDSE 269 (377)
Q Consensus 205 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~---~~~~~~~~la~~~~~~-----g-----~~~~A~ 269 (377)
.. .+..-|.. .=-.+=..++...+.+..+..- ..++ .....+-..|..|... | -.+.|.
T Consensus 78 ~~-----~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~ 151 (248)
T 3uzd_A 78 KI-----EMVRAYRE-KIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSE 151 (248)
T ss_dssp -H-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHH-HHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHH
Confidence 10 11111110 0011222333444444332211 1112 2222333445555432 1 136788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHH
Q 017109 270 ALFLESIRILEENGEGDSMTCIRRLRYLAQTYVK-ANRLTDAETVQRKILHIME 322 (377)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 322 (377)
..|++|.++......+.+|.......+.+..|.. .+++++|..+.++++.-.-
T Consensus 152 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai 205 (248)
T 3uzd_A 152 KAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI 205 (248)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 8999999998877777888887777777776665 7999999999888876543
No 327
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=46.76 E-value=35 Score=29.89 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
......++..+|.+|+.+|++++|....++++...
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 44567788999999999999999999999998753
No 328
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=46.52 E-value=53 Score=23.24 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=36.6
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 017109 258 VLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHI 320 (377)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 320 (377)
....+|+-++-.+.+...+. +.+..+..+..+|.+|.+.|+..+|.+++.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34456666655554444322 22222455788999999999999999999988753
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.87 E-value=1e+02 Score=23.78 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHc
Q 017109 268 SEALFLESIRILEEN-GEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQST 346 (377)
Q Consensus 268 A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 346 (377)
=..++++++..+... ...+++....+|...+.. .+++.+.|.-... ...|. ..+..|...|..+...
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~---~~IG~---~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAH---HHIGQ---ESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHH---TTCST---TBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHH---CCcch---hHHHHHHHHHHHHHHc
Confidence 457778887765543 123567777777777663 2455556655432 22232 3377888999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 017109 347 GSLMEAQELFERCLEA 362 (377)
Q Consensus 347 g~~~~A~~~~~~al~~ 362 (377)
|++.+|...|+..++.
T Consensus 164 g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 164 GLFQKADEVYQKGKRM 179 (223)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999988773
No 330
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=45.58 E-value=41 Score=29.42 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 017109 329 SLDTVIAAEGLALTLQSTGSLMEAQELFERCLEARK 364 (377)
Q Consensus 329 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 364 (377)
......++..+|++|.-+|++++|..+.++++....
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~~ 227 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGAE 227 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 344567888899999999999999999999987543
No 331
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=44.55 E-value=62 Score=20.97 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=24.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 017109 210 FHNLGQFYLVQRKLEDACTYYERALKIK 237 (377)
Q Consensus 210 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 237 (377)
-..+|..+...|+++.|+.+|-+|+..+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 3568888999999999999999999887
No 332
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.05 E-value=67 Score=20.64 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHhc
Q 017109 295 RYLAQTYVKANRLTDAETVQRKILHIMESS 324 (377)
Q Consensus 295 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 324 (377)
...|.-.-..|++++|+.+|..+++.+...
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 344455566799999999999999887553
No 333
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=39.53 E-value=1e+02 Score=21.89 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVAS 166 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 166 (377)
.+..+...|..|...|+.+.|.-+|-+-+.+...+ +.+|+.-.
T Consensus 41 sa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~ 83 (144)
T 2a9u_A 41 SALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQ 83 (144)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhh
Confidence 45667778999999999999999999999988766 55666543
No 334
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=39.03 E-value=89 Score=21.17 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=22.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 211 HNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 211 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
...|.-.-..|+|++|+.+|..+++.+...
T Consensus 22 v~~Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 22 ASKAAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 334445556799999999999999987554
No 335
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=38.19 E-value=38 Score=29.82 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.....++..+|++|+..|++++|..+.++++..
T Consensus 199 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 455678889999999999999999999999864
No 336
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=37.97 E-value=93 Score=21.08 Aligned_cols=34 Identities=18% Similarity=0.021 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 017109 123 WRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEG 156 (377)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 156 (377)
+..+...|.-.-..|+|++|+.+|..+++.+...
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 3444555666677899999999999999987654
No 337
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=37.24 E-value=78 Score=20.00 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 017109 207 GVAFHNLGQFYLVQRKLEDACTYYERALKIKGRV 240 (377)
Q Consensus 207 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (377)
+..+...|.-.-..|++++|+.+|..+++.+...
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445556666678899999999999999987543
No 338
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=36.77 E-value=47 Score=29.22 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 330 LDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 330 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.....++..+|++|.-.|++++|..+.++++..
T Consensus 199 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 344678888999999999999999999999874
No 339
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=36.41 E-value=2e+02 Score=24.44 Aligned_cols=119 Identities=7% Similarity=-0.055 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhh--------CCCCCHhHHHHHHHHHHHHHHhcCHhHHH-
Q 017109 121 SKWRVFTDSGRDYFLQGK------LAEAEKLFLSALQEAKEG--------FGERDPHVASACNNLAELYRVKKAFDKAE- 185 (377)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~- 185 (377)
+.+.+++++|.++...+. ...|..+|++|-.++.-+ ..+-++....++..+.....+.--+.+|+
T Consensus 121 E~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~ 200 (392)
T 1zb1_A 121 EKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLN 200 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -------------------HHHHHHHHHHHHhcCC----------------CchhHHHHHHHHHHHHHHccCHHHHHHHH
Q 017109 186 -------------------PLYLEAIKILQESFGP----------------EDIRIGVAFHNLGQFYLVQRKLEDACTYY 230 (377)
Q Consensus 186 -------------------~~~~~al~~~~~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 230 (377)
.+|+++.+........ .....+.+++..|......+++.+|+..+
T Consensus 201 ~~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L 280 (392)
T 1zb1_A 201 DQISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFL 280 (392)
T ss_dssp STTGGGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Q ss_pred HHHHHHHHH
Q 017109 231 ERALKIKGR 239 (377)
Q Consensus 231 ~~al~~~~~ 239 (377)
+.+.+....
T Consensus 281 ~~A~~~l~~ 289 (392)
T 1zb1_A 281 DFSMQQLIS 289 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 340
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=35.73 E-value=2.2e+02 Score=24.69 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHH
Q 017109 249 ADTMYHLATVLYLQGKENDSEALF 272 (377)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~ 272 (377)
......|+..+...+++.||--++
T Consensus 35 i~~l~~L~~~h~~~~ny~EAa~~l 58 (436)
T 2yin_A 35 IRYLYKLRDLHLDCDNYTEAAYTL 58 (436)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHH
Confidence 444556666677777777666655
No 341
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=35.53 E-value=1.6e+02 Score=22.99 Aligned_cols=182 Identities=9% Similarity=0.009 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHhcCCCc
Q 017109 125 VFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRV-KKAFDKAEPLYLEAIKILQESFGPED 203 (377)
Q Consensus 125 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 203 (377)
-+..++.+.-+.++|++...+.++..+. +......=.+.++.+|-. .|....+...+......-+...++..
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~-------~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~ 82 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEK-------GEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEK 82 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHH
Confidence 3556788889999999999999988764 122333444555555532 23333333333221111100111111
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--CCChh-HHHHHHHHHHHHHH-----cCC-----hhhHHH
Q 017109 204 IRIGVAFHNLGQFYLVQRKLEDACTYYERALKIKGRVLG--HGNID-YADTMYHLATVLYL-----QGK-----ENDSEA 270 (377)
Q Consensus 204 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~-~~~~~~~la~~~~~-----~g~-----~~~A~~ 270 (377)
.....-|.. .+ -.+=...+...+.+..+..- ...+. ....+-..|..|.. .|+ .+.|..
T Consensus 83 ~~~i~~yr~--ki------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~ 154 (236)
T 3iqu_A 83 GPEVREYRE--KV------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARS 154 (236)
T ss_dssp CSHHHHHHH--HH------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHH--HH------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence 111111110 00 01122333444444332210 11111 22223344555433 233 357888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHH
Q 017109 271 LFLESIRILEENGEGDSMTCIRRLRYLAQTYV-KANRLTDAETVQRKILHIM 321 (377)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 321 (377)
.|++|.++......+.+|.......+.+..|. -.+++++|....+++..-.
T Consensus 155 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 155 AYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999887777788888777777777666 5699999999888887654
No 342
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=34.95 E-value=72 Score=27.88 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
......++..+|.+|+.+|++++|..+.++++.
T Consensus 187 r~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 187 KPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345567889999999999999999999999875
No 343
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=34.33 E-value=71 Score=27.94 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.....++..+|++|+.++++++|..+.++++.
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45567888999999999999999999999875
No 344
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=32.86 E-value=99 Score=19.91 Aligned_cols=67 Identities=13% Similarity=-0.062 Sum_probs=44.2
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhcc
Q 017109 255 LATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIRRLRYLAQTYVKANRLTDAETVQRKILHIMESSK 325 (377)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 325 (377)
.|..++..|+|=+|-+.++..-...+. .........+....|..+...|+. |...+.+++.......
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~--~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG--EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC
Confidence 456677779999999998887764311 001112333344455566678888 9999999999876654
No 345
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=31.71 E-value=2.5e+02 Score=24.21 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017109 208 VAFHNLGQFYLVQRKLEDACTYYERALK 235 (377)
Q Consensus 208 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 235 (377)
.-+..|+..+...|+|.+|.-++..+..
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456788899999999999888875443
No 346
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=31.12 E-value=3.1e+02 Score=25.09 Aligned_cols=128 Identities=11% Similarity=-0.004 Sum_probs=77.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017109 213 LGQFYLVQRKLEDACTYYERALKIKGRVLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESIRILEENGEGDSMTCIR 292 (377)
Q Consensus 213 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (377)
.+.......+.+.|...+.+..... .-+..........++.-....+...++...+.+... .. .......
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~e 289 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RS---QSTSLIE 289 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TC---CCHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhcc----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cC---CChHHHH
Confidence 3444455567888888877654321 111122333444455445555545567777776432 11 2222222
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 293 RLRYLAQTYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
..+...+..|+++.|..++...-.. ........+.+|+.+...|+.++|..+|+++..
T Consensus 290 ---~~~r~Alr~~d~~~a~~~~~~l~~~--------~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 ---RRVRMALGTGDRRGLNTWLARLPME--------AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp ---HHHHHHHHHTCHHHHHHHHHHSCTT--------GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHCCCHHHHHHHHHHcccc--------ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2333445679999999988654321 123367789999999999999999999998764
No 347
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.96 E-value=3.5e+02 Score=25.01 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHHHHHHhc--C---------HhHHHHHHHHHH
Q 017109 124 RVFTDSGRDYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKK--A---------FDKAEPLYLEAI 192 (377)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~---------~~~A~~~~~~al 192 (377)
.+....|......|++++|+.+|.-|-+. +.........|+.+..... + .+.=....++..
T Consensus 444 ~i~~~aA~~ae~~G~~~dAi~LY~La~~~--------d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~ 515 (661)
T 2qx5_A 444 TITEQAARRADEDGRIYDSILLYQLAEEY--------DIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMA 515 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHH
Confidence 34455677777888888888887765432 1222223333444443321 1 011222233333
Q ss_pred HHHHHh------cCCCchhHHHHHHHHHHHH--HHccCHHHHHHHHHH
Q 017109 193 KILQES------FGPEDIRIGVAFHNLGQFY--LVQRKLEDACTYYER 232 (377)
Q Consensus 193 ~~~~~~------~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~ 232 (377)
+.+... ..+........+..+..++ ...|+++.|++.+++
T Consensus 516 ~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 516 SIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 332211 0001222344455555555 788999999888776
No 348
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=28.89 E-value=1.8e+02 Score=21.70 Aligned_cols=109 Identities=14% Similarity=0.073 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-----------------------------CC---CHHHHHHHHHHHH
Q 017109 252 MYHLATVLYLQGKENDSEALFLESIRILEENGE-----------------------------GD---SMTCIRRLRYLAQ 299 (377)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~---~~~~~~~~~~la~ 299 (377)
-..+++..+..|+.+.|...+.++...+..... .+ .| .-.....-++
T Consensus 38 DI~~AR~aL~~G~~~~Ak~lL~~A~~~L~~a~~d~~~f~ka~~k~~~~~~~~iPI~~~l~v~edf~~tp-eK~aAI~~AN 116 (191)
T 3dza_A 38 DIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAKMIADRYVIINASIALSEDYVATP-EKESAIQSAN 116 (191)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTSCHHHHHTTBCTTCCCCSSSSCEEEEEEEEEEECCCCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhchHHHHhhcccCCCCCCceEEEcceeeeeccccCCh-HHHHHHHHHH
Confidence 346788888999999999999999877655110 00 12 2234556788
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 300 TYVKANRLTDAETVQRKILHIMESSKGWNSLDTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 300 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
-.++.|+...|.+.++-+-.-..-..-.-...........+..+...|++.+|-..++.+.+
T Consensus 117 ~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 117 EKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 89999999999988875421100000000011244556778889999999999999988865
No 349
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=28.23 E-value=1.2e+02 Score=26.85 Aligned_cols=33 Identities=9% Similarity=-0.026 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.....++..+|++|+..|++++|..+.++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455678889999999999999999999999864
No 350
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=26.26 E-value=1.4e+02 Score=26.28 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017109 330 LDTVIAAEGLALTLQSTGSLMEAQELFERCLEA 362 (377)
Q Consensus 330 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 362 (377)
.....++..+|++|.-+|++++|..+.++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344668888999999999999999999999874
No 351
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.91 E-value=1.6e+02 Score=19.95 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=15.9
Q ss_pred HccCHHHHHHHHHHHHHHHHH
Q 017109 219 VQRKLEDACTYYERALKIKGR 239 (377)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~ 239 (377)
..|+.+.|+.+|++.+....+
T Consensus 34 E~g~k~~Al~lYk~GI~eLe~ 54 (116)
T 2dl1_A 34 ELGQKEEAKNYYKQGIGHLLR 54 (116)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHH
Confidence 348888888888888877654
No 352
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=25.89 E-value=1.3e+02 Score=21.24 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKE 155 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 155 (377)
.+..+...|..|...|+.+.|.-.|-+...+...
T Consensus 39 ta~~llr~A~~y~~egd~e~AYily~R~~~L~~e 72 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHAFILYNKYITLFIE 72 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999988853
No 353
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=24.79 E-value=3.4e+02 Score=23.41 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------hCCCC-------CH----------------------hHHH
Q 017109 122 KWRVFTDSGRDYFLQGKLAEAEKLFLSALQEAKE------GFGER-------DP----------------------HVAS 166 (377)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~-------~~----------------------~~~~ 166 (377)
....+..|+..+...|++.+|--++..+..+.-+ ...-+ .| ....
T Consensus 10 ~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ 89 (428)
T 2wm9_A 10 RKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLME 89 (428)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHH
Confidence 3566788999999999999998888754433222 11000 00 0112
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 017109 167 ACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAFHNLGQFYLV 219 (377)
Q Consensus 167 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 219 (377)
.+...+..+..-+.|+.|+..++..+..++.. .+-..++.++..++.+|..
T Consensus 90 ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~--~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 90 LLEQCADGLWKAERYELIADIYKLIIPIYEKR--RDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence 34445556666667788888888888777765 2444555555555555543
No 354
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=24.30 E-value=72 Score=28.09 Aligned_cols=32 Identities=3% Similarity=-0.017 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIR 277 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (377)
.....++..+|++|+..+++++|..+.++++.
T Consensus 177 ~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 177 PTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44567888899999999999999999988764
No 355
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.48 E-value=1.5e+02 Score=25.90 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 017109 203 DIRIGVAFHNLGQFYLVQRKLEDACTYYERALKI 236 (377)
Q Consensus 203 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 236 (377)
......++..+|.+|+.+|++++|..+.++++..
T Consensus 193 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 193 LFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3345678899999999999999999999999875
No 356
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=23.27 E-value=1.5e+02 Score=18.83 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHhcCCCchhHHHHH-HHHHHH
Q 017109 164 VASACNNLAELYRVKKAFDKAEPLYLEAIKILQESFGPEDIRIGVAF-HNLGQF 216 (377)
Q Consensus 164 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~ 216 (377)
.++....-|.-++..++|.+|...++++... .+++..-.++ +.++.|
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec 99 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEEC 99 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHH
Confidence 3556666778889999999999999999876 2345444444 444444
No 357
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.62 E-value=1.5e+02 Score=25.89 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 017109 246 IDYADTMYHLATVLYLQGKENDSEALFLESIRI 278 (377)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (377)
.....++..+|++|+..|++++|..+.++++..
T Consensus 194 ~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 194 FNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 445678889999999999999999999999864
No 358
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=22.50 E-value=93 Score=27.35 Aligned_cols=31 Identities=16% Similarity=0.042 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017109 331 DTVIAAEGLALTLQSTGSLMEAQELFERCLE 361 (377)
Q Consensus 331 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 361 (377)
....++..+|++|...+++++|..+.++++.
T Consensus 178 tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 178 TQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3356778899999999999999998887764
No 359
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=20.72 E-value=1.7e+02 Score=26.01 Aligned_cols=54 Identities=9% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---hcCCCChhHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 017109 223 LEDACTYYERALKIKGR---VLGHGNIDYADTMYHLATVLYLQGKENDSEALFLESI 276 (377)
Q Consensus 223 ~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (377)
++.-++-++.|+..... ...........++..+|++++..+++++|....++++
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi 209 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVY 209 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 360
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=20.04 E-value=1.8e+02 Score=18.54 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=12.9
Q ss_pred CChhhHHHHHHHHHHHHH
Q 017109 263 GKENDSEALFLESIRILE 280 (377)
Q Consensus 263 g~~~~A~~~~~~al~~~~ 280 (377)
|+.++|+.+|++.+.-+.
T Consensus 33 G~k~~A~~~YkkGi~eL~ 50 (89)
T 3eab_A 33 GQKEQAVEWYKKGIEELE 50 (89)
T ss_dssp SSGGGSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 777788888887776543
Done!