Query 017111
Match_columns 377
No_of_seqs 210 out of 978
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 3.8E-62 8.3E-67 467.0 27.2 285 70-371 33-343 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 6.1E-52 1.3E-56 384.1 13.0 177 112-289 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 6.5E-48 1.4E-52 354.7 19.8 168 124-292 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.2 1.9E-09 4.1E-14 106.7 20.2 119 100-225 1-137 (314)
5 PF14592 Chondroitinas_B: Chon 99.0 7.7E-09 1.7E-13 105.5 13.3 193 89-291 1-256 (425)
6 TIGR03808 RR_plus_rpt_1 twin-a 98.4 2E-05 4.3E-10 81.2 17.7 112 98-215 55-176 (455)
7 PF13229 Beta_helix: Right han 98.3 1.6E-05 3.5E-10 68.1 13.0 133 147-293 2-138 (158)
8 TIGR03805 beta_helix_1 paralle 98.2 0.00013 2.9E-09 72.4 18.6 154 130-297 63-247 (314)
9 PF12708 Pectate_lyase_3: Pect 98.2 0.00011 2.3E-09 67.3 16.3 173 99-292 20-220 (225)
10 PLN02218 polygalacturonase ADP 98.1 0.00023 4.9E-09 73.8 19.5 100 152-255 222-323 (431)
11 PLN02218 polygalacturonase ADP 98.0 9.3E-05 2E-09 76.6 14.1 138 148-299 195-352 (431)
12 PLN03003 Probable polygalactur 98.0 0.00016 3.6E-09 75.1 15.8 104 148-255 164-269 (456)
13 PLN02793 Probable polygalactur 98.0 7.6E-05 1.7E-09 77.5 13.3 118 148-269 203-330 (443)
14 PLN02188 polygalacturonase/gly 97.9 0.00013 2.7E-09 75.1 13.0 102 149-254 182-285 (404)
15 PLN02155 polygalacturonase 97.9 0.00011 2.4E-09 75.2 12.2 103 148-254 171-275 (394)
16 PLN02480 Probable pectinestera 97.9 0.0012 2.6E-08 66.6 19.2 99 98-199 61-183 (343)
17 PF07602 DUF1565: Protein of u 97.8 0.0016 3.5E-08 62.8 17.0 119 99-220 17-166 (246)
18 PLN03010 polygalacturonase 97.7 0.0036 7.8E-08 64.6 19.6 99 153-255 188-288 (409)
19 PF13229 Beta_helix: Right han 97.7 0.00042 9.1E-09 59.3 11.0 129 147-289 25-158 (158)
20 PLN02197 pectinesterase 97.7 0.008 1.7E-07 64.6 22.7 133 62-199 251-410 (588)
21 PLN02793 Probable polygalactur 97.7 0.0038 8.2E-08 65.0 19.5 137 148-298 180-336 (443)
22 PLN03003 Probable polygalactur 97.7 0.0017 3.7E-08 67.7 16.8 109 148-269 141-262 (456)
23 PF05048 NosD: Periplasmic cop 97.7 0.0022 4.7E-08 60.2 15.8 86 147-247 59-144 (236)
24 PF01696 Adeno_E1B_55K: Adenov 97.6 0.0031 6.7E-08 64.2 17.5 183 85-293 47-241 (386)
25 PF05048 NosD: Periplasmic cop 97.6 0.0012 2.6E-08 62.0 13.4 131 145-291 35-167 (236)
26 PF00295 Glyco_hydro_28: Glyco 97.6 0.00022 4.8E-09 71.0 8.7 105 147-255 117-223 (326)
27 PLN03010 polygalacturonase 97.5 0.0036 7.8E-08 64.5 16.6 172 112-298 107-316 (409)
28 PLN02176 putative pectinestera 97.4 0.0025 5.5E-08 64.1 12.9 117 93-215 44-187 (340)
29 PF00295 Glyco_hydro_28: Glyco 97.3 0.0019 4.1E-08 64.4 11.5 88 148-248 95-187 (326)
30 PLN02155 polygalacturonase 97.3 0.0074 1.6E-07 62.0 15.7 137 148-298 148-305 (394)
31 PLN02188 polygalacturonase/gly 97.3 0.0098 2.1E-07 61.3 16.4 138 148-299 158-317 (404)
32 TIGR03808 RR_plus_rpt_1 twin-a 97.3 0.0037 8E-08 64.8 12.9 162 132-294 122-369 (455)
33 COG3420 NosD Nitrous oxidase a 97.3 0.015 3.2E-07 58.3 16.3 94 116-215 39-139 (408)
34 PLN02432 putative pectinestera 97.2 0.018 3.8E-07 57.0 16.7 112 98-215 24-152 (293)
35 PLN02773 pectinesterase 97.2 0.024 5.3E-07 56.6 17.8 99 98-199 18-148 (317)
36 PLN02170 probable pectinestera 97.2 0.026 5.5E-07 60.0 18.8 103 93-198 230-358 (529)
37 PLN02416 probable pectinestera 97.2 0.021 4.6E-07 60.9 18.1 120 93-215 235-396 (541)
38 PLN02217 probable pectinestera 97.1 0.026 5.7E-07 61.5 18.0 197 93-293 255-516 (670)
39 PLN02933 Probable pectinestera 97.1 0.041 9E-07 58.5 18.7 103 93-198 223-350 (530)
40 PLN02497 probable pectinestera 97.0 0.062 1.3E-06 54.1 17.9 111 99-215 46-181 (331)
41 PLN02201 probable pectinestera 97.0 0.05 1.1E-06 57.8 18.1 102 94-198 212-338 (520)
42 smart00656 Amb_all Amb_all dom 97.0 0.016 3.5E-07 53.6 12.9 131 130-269 45-189 (190)
43 PLN02301 pectinesterase/pectin 97.0 0.051 1.1E-06 58.1 18.2 120 93-215 241-402 (548)
44 PLN02488 probable pectinestera 96.9 0.061 1.3E-06 56.9 17.8 153 93-249 202-401 (509)
45 PLN02745 Putative pectinestera 96.9 0.067 1.5E-06 57.8 18.2 119 94-215 291-451 (596)
46 PLN02665 pectinesterase family 96.8 0.076 1.7E-06 54.1 17.5 112 98-215 81-218 (366)
47 PLN03043 Probable pectinestera 96.8 0.078 1.7E-06 56.6 18.1 144 99-246 237-427 (538)
48 PF01095 Pectinesterase: Pecti 96.8 0.025 5.5E-07 56.0 13.3 111 98-216 13-147 (298)
49 PLN02713 Probable pectinestera 96.8 0.075 1.6E-06 57.1 17.6 120 93-215 255-419 (566)
50 PLN02708 Probable pectinestera 96.8 0.012 2.7E-07 62.8 11.7 103 93-198 246-375 (553)
51 PLN02304 probable pectinestera 96.8 0.021 4.5E-07 58.4 12.7 111 99-215 89-226 (379)
52 PLN02313 Pectinesterase/pectin 96.7 0.1 2.2E-06 56.3 18.4 148 95-246 282-476 (587)
53 PLN02995 Probable pectinestera 96.7 0.023 5.1E-07 60.5 13.0 117 93-215 228-371 (539)
54 PLN02506 putative pectinestera 96.7 0.07 1.5E-06 57.0 16.5 115 98-215 245-398 (537)
55 COG5434 PGU1 Endopygalactoruna 96.6 0.031 6.6E-07 59.6 13.5 101 147-254 263-375 (542)
56 PLN02682 pectinesterase family 96.6 0.027 5.9E-07 57.4 12.6 112 98-215 83-227 (369)
57 PLN02990 Probable pectinestera 96.6 0.023 5E-07 61.0 12.5 104 93-199 264-393 (572)
58 PLN02314 pectinesterase 96.5 0.019 4.1E-07 61.8 11.2 98 99-199 292-411 (586)
59 PLN02468 putative pectinestera 96.4 0.029 6.3E-07 60.2 11.5 102 95-199 265-391 (565)
60 PLN02634 probable pectinestera 96.3 0.072 1.6E-06 54.1 12.9 111 99-215 70-213 (359)
61 PLN02484 probable pectinestera 96.2 0.046 9.9E-07 58.9 11.6 100 98-199 285-406 (587)
62 PLN02916 pectinesterase family 96.1 0.061 1.3E-06 56.9 11.8 100 98-200 200-324 (502)
63 PF12708 Pectate_lyase_3: Pect 95.8 0.03 6.5E-07 51.0 7.4 102 131-248 98-221 (225)
64 PRK10531 acyl-CoA thioesterase 95.7 0.27 5.8E-06 51.0 14.3 111 85-199 80-256 (422)
65 PF00544 Pec_lyase_C: Pectate 95.7 0.059 1.3E-06 50.2 8.7 127 131-266 52-200 (200)
66 PLN02671 pectinesterase 95.5 0.23 4.9E-06 50.6 12.8 111 99-215 73-217 (359)
67 COG3866 PelB Pectate lyase [Ca 95.0 0.52 1.1E-05 46.9 13.2 140 148-293 95-252 (345)
68 COG5434 PGU1 Endopygalactoruna 93.8 0.25 5.5E-06 52.7 8.7 135 107-248 236-399 (542)
69 PF14592 Chondroitinas_B: Chon 90.8 0.57 1.2E-05 48.6 6.6 35 236-270 246-284 (425)
70 COG3420 NosD Nitrous oxidase a 89.1 2.3 4.9E-05 43.2 8.9 92 125-220 99-196 (408)
71 PF08480 Disaggr_assoc: Disagg 87.7 3.6 7.8E-05 38.3 8.7 88 205-293 2-110 (198)
72 COG4677 PemB Pectin methyleste 87.5 7.3 0.00016 39.5 11.3 147 97-255 94-294 (405)
73 PF12541 DUF3737: Protein of u 77.0 6.5 0.00014 38.6 6.3 64 152-227 17-80 (277)
74 TIGR03804 para_beta_helix para 74.3 5.5 0.00012 27.5 3.8 40 173-215 1-40 (44)
75 PLN02698 Probable pectinestera 73.8 12 0.00026 39.9 7.8 54 145-199 262-316 (497)
76 PF12541 DUF3737: Protein of u 67.4 30 0.00065 34.1 8.3 30 236-268 195-224 (277)
77 PF03211 Pectate_lyase: Pectat 66.1 37 0.0008 32.4 8.5 60 148-215 57-116 (215)
78 PF08480 Disaggr_assoc: Disagg 63.5 43 0.00093 31.4 8.2 73 179-251 32-113 (198)
79 PF07602 DUF1565: Protein of u 55.5 56 0.0012 31.8 7.9 74 144-222 113-193 (246)
80 PF03718 Glyco_hydro_49: Glyco 46.1 99 0.0021 33.5 8.5 92 147-244 345-443 (582)
81 TIGR03804 para_beta_helix para 44.5 50 0.0011 22.6 4.3 41 147-192 1-41 (44)
82 PF01696 Adeno_E1B_55K: Adenov 34.6 1.1E+02 0.0025 31.6 6.7 78 204-291 120-199 (386)
83 PF06355 Aegerolysin: Aegeroly 33.5 1.8E+02 0.0038 25.5 6.9 58 154-212 15-88 (131)
84 KOG1924 RhoA GTPase effector D 31.9 46 0.00099 37.6 3.5 19 236-254 860-878 (1102)
85 smart00710 PbH1 Parallel beta- 29.8 75 0.0016 18.1 2.9 14 182-195 3-16 (26)
86 smart00722 CASH Domain present 28.6 2.5E+02 0.0055 22.9 7.0 60 130-193 18-88 (146)
87 PRK03174 sspH acid-soluble spo 22.9 61 0.0013 24.8 1.8 19 172-190 14-32 (59)
88 PRK01625 sspH acid-soluble spo 20.0 76 0.0017 24.2 1.8 19 172-190 14-32 (59)
89 TIGR02861 SASP_H small acid-so 20.0 76 0.0016 24.1 1.8 18 172-189 14-31 (58)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-62 Score=466.98 Aligned_cols=285 Identities=31% Similarity=0.492 Sum_probs=240.0
Q ss_pred CcccccC-------CCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec------ceeEeccCcceee
Q 017111 70 QAEGFGR-------LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR------SHLSVSSYKTIDG 136 (377)
Q Consensus 70 ~a~Gfg~-------~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~------~~l~V~sn~TI~G 136 (377)
..+|||. +||||.||.+++|+|.+| |..++++.+|.++|+.|.|+|+++ ..|++.+||||.|
T Consensus 33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG 107 (345)
T COG3866 33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVG 107 (345)
T ss_pred cccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEe
Confidence 4678875 589999999999999999 999999999997777799999987 4577889999999
Q ss_pred cccceEEeCCcEEEeeeccEEEeeeEEeCCCCCC--CCceEecCCCceEEEEceeeec--------CCCCceEeeeCCce
Q 017111 137 RGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPD--VDAIQIKPKSKHIWIDRCSLRD--------YDDGLIDITRESTD 206 (377)
Q Consensus 137 ~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~~~~--~DaI~i~~~s~nVwIDHcs~s~--------~~Dglidi~~~s~~ 206 (377)
.|..++|.|++|.|+.+.|||||||+|++-...| .|+|+|+..++|||||||+|.. ..||++||++++++
T Consensus 108 ~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~Any 187 (345)
T COG3866 108 SGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANY 187 (345)
T ss_pred eccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcE
Confidence 9999999999999999999999999999865433 5999997689999999999998 68999999999999
Q ss_pred EEEeCceecCCCceeEecCCCCC-CCCcceeEEEecceecCCCCCCCccccCeeEEEcceEEcCccceeeec--CCceEE
Q 017111 207 ITVSRCHFSSHDKTMLIGADPSH-VADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCAS--VDSQIY 283 (377)
Q Consensus 207 vTIS~n~f~~h~k~~LiG~~d~~-~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~--~~a~v~ 283 (377)
||||||+|++|+|.+|+|++|+. .+|+..+||||||||+|+.||+||+|||.+||+||||+....|++..+ ..|+++
T Consensus 188 ITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~Akiy 267 (345)
T COG3866 188 ITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIY 267 (345)
T ss_pred EEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEE
Confidence 99999999999999999999874 456779999999999999999999999999999999996655555444 459999
Q ss_pred EEceeEecCCccceeeeeccccCCcccCCCceEEecCCeeecccccccccccCCcccccCCCCCCcccccchHHHHHHHH
Q 017111 284 SQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLL 363 (377)
Q Consensus 284 ~e~N~F~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng~~~~~~~~~~~~~~~~P~~~y~~yt~~~As~avk~vv 363 (377)
+|+|||+.+..+..|-. + ...+|||..+-+.|++.+...... .+...|.|+++| +|++++++ .||++|
T Consensus 268 vE~NyF~~~~~~~~f~d------t--~~~~GY~~~d~gsy~~~s~~~~~~--~~G~~w~ps~~Y-~Ytvd~~~-dVks~V 335 (345)
T COG3866 268 VENNYFENGSEGLGFLD------T--KGTSGYANQDSGSYLNSSKSMSVR--AGGVTWNPSSYY-SYTVDPPE-DVKSFV 335 (345)
T ss_pred EecceeccCCCCceeee------c--CCccceEEeccCceecccCCcccc--cCCccCCCCCCc-ccccCChH-Hhhhhh
Confidence 99999999876654421 1 112499996555565544322112 233789999977 49999985 799999
Q ss_pred HhCcCCCc
Q 017111 364 QRCTGWQD 371 (377)
Q Consensus 364 ~~~AG~~~ 371 (377)
.++||++-
T Consensus 336 t~yAGaGk 343 (345)
T COG3866 336 TNYAGAGK 343 (345)
T ss_pred hcccccee
Confidence 99999763
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=6.1e-52 Score=384.08 Aligned_cols=177 Identities=46% Similarity=0.750 Sum_probs=158.1
Q ss_pred EEEEeceEEEecceeEeccCcceeecccceEEeCCcEEEe-eeccEEEeeeEEeCC----------C--CCCCCceEecC
Q 017111 112 IVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGG----------K--GPDVDAIQIKP 178 (377)
Q Consensus 112 IVf~vsG~I~l~~~l~V~sn~TI~G~G~g~~I~G~gl~i~-~a~NVIIRnL~ir~g----------~--~~~~DaI~i~~ 178 (377)
+||+++|+|+++.+|.|.|||||+|+|.+++|.+.|+++. +++|||||||+|+.. . ..+.|+|+|+
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~- 81 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID- 81 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence 4677999999999999999999999999999999999997 899999999999981 1 2568999998
Q ss_pred CCceEEEEceeeecC--------CCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCC
Q 017111 179 KSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQR 250 (377)
Q Consensus 179 ~s~nVwIDHcs~s~~--------~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R 250 (377)
+++|||||||+|+|+ .||++|++.++++||||||+|.+|+|++|+|+++....|.+++||||||||+++.+|
T Consensus 82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R 161 (200)
T PF00544_consen 82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR 161 (200)
T ss_dssp STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence 889999999999999 999999999999999999999999999999998877777779999999999999999
Q ss_pred CCccccCeeEEEcceEEcCccceeeecCCceEEEEceeE
Q 017111 251 HPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY 289 (377)
Q Consensus 251 ~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F 289 (377)
+||+|+|++|+|||||+++..|++++++++++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=6.5e-48 Score=354.66 Aligned_cols=168 Identities=45% Similarity=0.699 Sum_probs=157.7
Q ss_pred ceeEeccCcceeecccceEEeCCcEEEeeeccEEEeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecC-------
Q 017111 124 SHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDY------- 193 (377)
Q Consensus 124 ~~l~V~sn~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~------- 193 (377)
.+|.|+|||||+|+|++++|.|.+|++++++|||||||+|+++.. .+.|+|+++ ++++||||||+|+|.
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~ 88 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD 88 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence 468899999999999999999999999889999999999998754 568999997 799999999999998
Q ss_pred --CCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEEcCcc
Q 017111 194 --DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI 271 (377)
Q Consensus 194 --~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~ 271 (377)
.|+++|++.++++||||||+|.+|+|++|||++++...+..++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus 89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~ 168 (190)
T smart00656 89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS 168 (190)
T ss_pred CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence 899999999999999999999999999999998876555578999999999999999999999999999999999998
Q ss_pred ceeeecCCceEEEEceeEecC
Q 017111 272 YAVCASVDSQIYSQCNIYEAG 292 (377)
Q Consensus 272 ~ai~~~~~a~v~~e~N~F~~g 292 (377)
|+++++.++++++|+|||+..
T Consensus 169 ~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 169 YAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred EeEecCCCcEEEEECeEEECC
Confidence 999999999999999999874
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.19 E-value=1.9e-09 Score=106.74 Aligned_cols=119 Identities=26% Similarity=0.322 Sum_probs=77.5
Q ss_pred HHHhhhcCCCeEEEEEeceEEEecceeEec-cCcceeecccc-eEEe-------CCcEEEeeeccEEEeeeEEeCCCCCC
Q 017111 100 LREGCRMKEPLWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQR-VKLT-------GKGLRLKECEHVIICNLEFEGGKGPD 170 (377)
Q Consensus 100 Lr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V~-sn~TI~G~G~g-~~I~-------G~gl~i~~a~NVIIRnL~ir~g~~~~ 170 (377)
||+|+.+..|..+|+--.|+.++++.|.|. +++||.|.|.. ..|. +.+|.+. ++||.|++|+++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~~--- 76 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENTK--- 76 (314)
T ss_pred CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcCC---
Confidence 688998888876666678999888889887 89999998753 4443 2346554 788888888887642
Q ss_pred CCceEecCCCceEEEEceeeecC--------CCCceEeeeCCceEEEeCceecC-CCceeEecC
Q 017111 171 VDAIQIKPKSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSS-HDKTMLIGA 225 (377)
Q Consensus 171 ~DaI~i~~~s~nVwIDHcs~s~~--------~Dglidi~~~s~~vTIS~n~f~~-h~k~~LiG~ 225 (377)
.+||.+. ++++|.|++|.+.|. .+| |.+ ..+.+++|.+|.++. .+.+..++.
T Consensus 77 ~~GI~v~-~s~~i~I~n~~i~~~~~~~~~~~~~G-I~~-~~s~~v~I~~n~i~g~~d~GIyv~~ 137 (314)
T TIGR03805 77 GDGVKVK-GSDGIIIRRLRVEWTGGPKSSNGAYG-IYP-VESTNVLVEDSYVRGASDAGIYVGQ 137 (314)
T ss_pred CCeEEEe-CCCCEEEEeeEEEeccCccccCCcce-EEE-eccCCEEEECCEEECCCcccEEECC
Confidence 3566664 566666666666543 234 334 245666666666654 233444443
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.96 E-value=7.7e-09 Score=105.54 Aligned_cols=193 Identities=16% Similarity=0.235 Sum_probs=97.6
Q ss_pred ecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEec------cCcceeec-ccceEEeCCc-EEEeeeccEEEee
Q 017111 89 VTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVS------SYKTIDGR-GQRVKLTGKG-LRLKECEHVIICN 160 (377)
Q Consensus 89 VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V~------sn~TI~G~-G~g~~I~G~g-l~i~~a~NVIIRn 160 (377)
|+|+++ |++||++..|...|+..+|+.+ ...|.+. ..+||..+ ..++.|.|.. |+|. ++.++|.+
T Consensus 1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G 73 (425)
T PF14592_consen 1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG 73 (425)
T ss_dssp E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence 566666 9999998877777777899997 3356652 56899887 4578888874 7886 78999999
Q ss_pred eEEeCCCCCC---------C-----CceEec-----------------------CCCceEEEEceeeecC--CCCceEee
Q 017111 161 LEFEGGKGPD---------V-----DAIQIK-----------------------PKSKHIWIDRCSLRDY--DDGLIDIT 201 (377)
Q Consensus 161 L~ir~g~~~~---------~-----DaI~i~-----------------------~~s~nVwIDHcs~s~~--~Dglidi~ 201 (377)
|.|+.|.... . +-.++. -.+++--||||.|..- ..-+|-+.
T Consensus 74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~ 153 (425)
T PF14592_consen 74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR 153 (425)
T ss_dssp -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence 9998652100 0 011110 0133444699999752 23333332
Q ss_pred -------eCCceEEEeCceecC-------CCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcc--ccCeeEEEcce
Q 017111 202 -------RESTDITVSRCHFSS-------HDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV--RYAKVHLYNNY 265 (377)
Q Consensus 202 -------~~s~~vTIS~n~f~~-------h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~--r~G~~hv~NN~ 265 (377)
....+-+|.+|+|.. ...++-||.+.....+ -+.++-+|||.+|.+-.=-+ +-+...++||.
T Consensus 154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt 231 (425)
T PF14592_consen 154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT 231 (425)
T ss_dssp -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence 124577899999984 3457788876433222 27899999999999875444 33566777787
Q ss_pred EEcCccceeeecCCceEEEEceeEec
Q 017111 266 TRNWGIYAVCASVDSQIYSQCNIYEA 291 (377)
Q Consensus 266 ~~n~~~~ai~~~~~a~v~~e~N~F~~ 291 (377)
|++... .+..|-+-.-.+++|+|..
T Consensus 232 f~es~G-~ltlRHGn~n~V~gN~FiG 256 (425)
T PF14592_consen 232 FRESQG-SLTLRHGNRNTVEGNVFIG 256 (425)
T ss_dssp EES-SS-EEEEEE-SS-EEES-EEEE
T ss_pred EEeccc-eEEEecCCCceEeccEEec
Confidence 776532 3444444444456666654
No 6
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.37 E-value=2e-05 Score=81.24 Aligned_cols=112 Identities=15% Similarity=0.198 Sum_probs=76.6
Q ss_pred hhHHHhhhcCC-CeEEEEEeceEEEecceeEeccCcceeecccceE---EeCCc-EE-EeeeccEEEeeeEEeCCC---C
Q 017111 98 GSLREGCRMKE-PLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVK---LTGKG-LR-LKECEHVIICNLEFEGGK---G 168 (377)
Q Consensus 98 GSLr~Ai~~~~-Pr~IVf~vsG~I~l~~~l~V~sn~TI~G~G~g~~---I~G~g-l~-i~~a~NVIIRnL~ir~g~---~ 168 (377)
-.|++||++.. +...|.-..|+. +..+|.+.+++||.|+ .+++ |.|.+ +. -..++||.|++|+|++.. .
T Consensus 55 ~ALQaAIdaAa~gG~tV~Lp~G~Y-~~G~L~L~spltL~G~-~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~ 132 (455)
T TIGR03808 55 RALQRAIDEAARAQTPLALPPGVY-RTGPLRLPSGAQLIGV-RGATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP 132 (455)
T ss_pred HHHHHHHHHhhcCCCEEEECCCce-ecccEEECCCcEEEec-CCcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence 34999987632 332233366876 3377999999999998 3454 66654 22 236999999999999753 1
Q ss_pred CCCCceEecCCCceEEEEceeeecC-CCCceEeeeCCceEEEeCceec
Q 017111 169 PDVDAIQIKPKSKHIWIDRCSLRDY-DDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 169 ~~~DaI~i~~~s~nVwIDHcs~s~~-~Dglidi~~~s~~vTIS~n~f~ 215 (377)
...-+|.+. +++++-|.+|+|.+. ..| |.+. +++ ..|+.|.|.
T Consensus 133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I~ 176 (455)
T TIGR03808 133 QRRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTIT 176 (455)
T ss_pred CCCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceEe
Confidence 234578885 899999999999998 488 6663 455 444444443
No 7
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.29 E-value=1.6e-05 Score=68.09 Aligned_cols=133 Identities=18% Similarity=0.267 Sum_probs=89.7
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (377)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~ 226 (377)
||.+.+..++.|++.+|+.. ..+||.+. ....+.|+.|+|.+...+ |.+. ...+++|++|.|.+...+..+-..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence 67787788899999999975 36899997 677789999999995555 6774 458999999999988754444322
Q ss_pred CCCCCCcceeEEEecceecCCCCCCCccc--cCeeEEEcceEEcCccceeeecCCc--eEEEEceeEecCC
Q 017111 227 PSHVADRCIRVTIHHCFFDGTRQRHPRVR--YAKVHLYNNYTRNWGIYAVCASVDS--QIYSQCNIYEAGQ 293 (377)
Q Consensus 227 d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r--~G~~hv~NN~~~n~~~~ai~~~~~a--~v~~e~N~F~~g~ 293 (377)
-.+++.+|.|.++..-.=.+. ...+.+.||.+.+-...++...... .+.+++|.|....
T Consensus 76 --------~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 76 --------SNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNG 138 (158)
T ss_dssp --------CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECES
T ss_pred --------CCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCc
Confidence 267888888888765433333 2357899999988776777666655 8888999988754
No 8
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.19 E-value=0.00013 Score=72.43 Aligned_cols=154 Identities=15% Similarity=0.164 Sum_probs=100.0
Q ss_pred cCcceeecccceEEe---CCcEEEeeeccEEEeeeEEeCCCC----CCCCceEecCCCceEEEEceeeecCCCCceEeee
Q 017111 130 SYKTIDGRGQRVKLT---GKGLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR 202 (377)
Q Consensus 130 sn~TI~G~G~g~~I~---G~gl~i~~a~NVIIRnL~ir~g~~----~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~ 202 (377)
+++||.+. +|. +.+|.+..++|++||++++..... ...+||.+. .++++.|.+|.++...|--|-+ .
T Consensus 63 ~~VtI~~l----tI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv-~ 136 (314)
T TIGR03805 63 DDVTLSDL----AVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYV-G 136 (314)
T ss_pred CCeEEEee----EEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEE-C
Confidence 56666654 222 347888889999999999974321 236789886 7999999999999887744667 4
Q ss_pred CCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCC--------CccccCeeEEEcceEEcCc----
Q 017111 203 ESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--------PRVRYAKVHLYNNYTRNWG---- 270 (377)
Q Consensus 203 ~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~--------Pr~r~G~~hv~NN~~~n~~---- 270 (377)
.+++++|++|.+.+..++..+-.+. ++.+.+|.+.++..-- |......+.|+||.+.+..
T Consensus 137 ~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~ 208 (314)
T TIGR03805 137 QSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNF 208 (314)
T ss_pred CCCCeEEECCEEccCcceEEEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCC
Confidence 6889999999998777777665432 3556666665543211 1111134667777665321
Q ss_pred ------------cceeeecCCceEEEEceeEecCCccce
Q 017111 271 ------------IYAVCASVDSQIYSQCNIYEAGQKKMA 297 (377)
Q Consensus 271 ------------~~ai~~~~~a~v~~e~N~F~~g~~~~~ 297 (377)
..++.......+.+++|.|.......+
T Consensus 209 ~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 209 APAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred cccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 112222233567888999988765433
No 9
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.17 E-value=0.00011 Score=67.26 Aligned_cols=173 Identities=17% Similarity=0.239 Sum_probs=97.2
Q ss_pred hHHHhh--hcCCCeEEEEEeceEEEecceeEeccCcceeecccce-EEe--CC--cE-------EEee-ecc--EEEeee
Q 017111 99 SLREGC--RMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRV-KLT--GK--GL-------RLKE-CEH--VIICNL 161 (377)
Q Consensus 99 SLr~Ai--~~~~Pr~IVf~vsG~I~l~~~l~V~sn~TI~G~G~g~-~I~--G~--gl-------~i~~-a~N--VIIRnL 161 (377)
.|++|| .+....-+|+-..|++.++..|.+.++++|.|.|... .+. +. .+ .+.. ..+ +-|+||
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 499999 3333344555589999999999999999999997643 333 11 11 1111 122 449999
Q ss_pred EEeCCCCC---CCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEe------CceecCCCceeEecCCCCCCCC
Q 017111 162 EFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVS------RCHFSSHDKTMLIGADPSHVAD 232 (377)
Q Consensus 162 ~ir~g~~~---~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS------~n~f~~h~k~~LiG~~d~~~~d 232 (377)
+|...... ...+|.+. .++++||++|++.......+.+. ..+..++. ++.|++..+
T Consensus 100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~------------- 164 (225)
T PF12708_consen 100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN------------- 164 (225)
T ss_dssp EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE-------------
T ss_pred EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee-------------
Confidence 99976532 24678886 78999999999998755556664 12222222 222222111
Q ss_pred cceeEEEecceecCCCCCCCcccc--CeeEEEcceEEcCccceeeecCCceEEEEceeEecC
Q 017111 233 RCIRVTIHHCFFDGTRQRHPRVRY--AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG 292 (377)
Q Consensus 233 ~~~~VT~hhNlf~~~~~R~Pr~r~--G~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g 292 (377)
.+.+...++.....- +.. -.+.+.||++.+....++....+..+.+++|.|+..
T Consensus 165 ---~~~~~~~~~~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~ 220 (225)
T PF12708_consen 165 ---NVIVNNCIFNGGDNG---IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENC 220 (225)
T ss_dssp ---EEEEECEEEESSSCS---EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESS
T ss_pred ---EEEECCccccCCCce---eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECC
Confidence 111111111111111 111 145677777776555677666666777777777764
No 10
>PLN02218 polygalacturonase ADPG
Probab=98.13 E-value=0.00023 Score=73.76 Aligned_cols=100 Identities=20% Similarity=0.334 Sum_probs=69.8
Q ss_pred eeccEEEeeeEEeCC-CCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCCCCCC
Q 017111 152 ECEHVIICNLEFEGG-KGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV 230 (377)
Q Consensus 152 ~a~NVIIRnL~ir~g-~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~ 230 (377)
.++||+|+||+|... .....|||.+. .++||+|.+|.+.-+.| .|.++.++.+|+|++|.+. +..++-||+-....
T Consensus 222 ~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDD-cIaIksgs~nI~I~n~~c~-~GHGisIGS~g~~~ 298 (431)
T PLN02218 222 KCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDD-CISIESGSQNVQINDITCG-PGHGISIGSLGDDN 298 (431)
T ss_pred ceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCc-eEEecCCCceEEEEeEEEE-CCCCEEECcCCCCC
Confidence 345555555555542 12457999996 89999999999988755 5999999999999999985 34456788743221
Q ss_pred -CCcceeEEEecceecCCCCCCCccc
Q 017111 231 -ADRCIRVTIHHCFFDGTRQRHPRVR 255 (377)
Q Consensus 231 -~d~~~~VT~hhNlf~~~~~R~Pr~r 255 (377)
.+.-.+|++.++.|.++. +.=|++
T Consensus 299 ~~~~V~nV~v~n~~~~~t~-nGvRIK 323 (431)
T PLN02218 299 SKAFVSGVTVDGAKLSGTD-NGVRIK 323 (431)
T ss_pred CCceEEEEEEEccEEecCC-cceEEe
Confidence 222248899998887753 444554
No 11
>PLN02218 polygalacturonase ADPG
Probab=98.02 E-value=9.3e-05 Score=76.61 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=93.7
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L 222 (377)
|++.+++||.|++|+|+....+ .|.+. .+++|+|++.++.. ..|| ||+ ..+.+|+|++|.|..-+-+.-
T Consensus 195 i~f~~~~nv~I~gitl~nSp~w---~i~~~-~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNAQQI---QISIE-KCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred EEEEccccEEEeCeEEEcCCCE---EEEEE-ceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEE
Confidence 6778899999999999986543 57776 78999999999864 6899 999 468999999999998887777
Q ss_pred ecCCCCCCCCcceeEEEecceecCCCC-------CCCcc-ccCeeEEEcceEEcCcccee--e-----ecCCceEEEEce
Q 017111 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRV-RYAKVHLYNNYTRNWGIYAV--C-----ASVDSQIYSQCN 287 (377)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~ai--~-----~~~~a~v~~e~N 287 (377)
|.+.. .+|++.++++..... +.+.- ..-.++|.|+.+.+.. .++ - .+.-..|.+++.
T Consensus 269 Iksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni 340 (431)
T PLN02218 269 IESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNI 340 (431)
T ss_pred ecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeE
Confidence 76531 267887777643211 11100 0014677777776643 233 1 112235777777
Q ss_pred eEecCCccceee
Q 017111 288 IYEAGQKKMAFK 299 (377)
Q Consensus 288 ~F~~g~~~~~~~ 299 (377)
.+++...+..+.
T Consensus 341 ~m~~V~~pI~Id 352 (431)
T PLN02218 341 QMENVKNPIIID 352 (431)
T ss_pred EEEcccccEEEE
Confidence 777776665543
No 12
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.01 E-value=0.00016 Score=75.14 Aligned_cols=104 Identities=24% Similarity=0.454 Sum_probs=78.4
Q ss_pred EEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111 148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~ 226 (377)
+.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+-
T Consensus 164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSl 240 (456)
T PLN03003 164 IHISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSL 240 (456)
T ss_pred EEEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeec
Confidence 45567889999999998753 3567999996 899999999999887665 9999999999999999863 346778864
Q ss_pred CCCC-CCcceeEEEecceecCCCCCCCccc
Q 017111 227 PSHV-ADRCIRVTIHHCFFDGTRQRHPRVR 255 (377)
Q Consensus 227 d~~~-~d~~~~VT~hhNlf~~~~~R~Pr~r 255 (377)
.... .+.-.+|++.++.|.++. +.=|++
T Consensus 241 g~~g~~~~V~NV~v~n~~~~~T~-nGvRIK 269 (456)
T PLN03003 241 GKDGETATVENVCVQNCNFRGTM-NGARIK 269 (456)
T ss_pred cCCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence 3221 122358999999998763 344654
No 13
>PLN02793 Probable polygalacturonase
Probab=98.01 E-value=7.6e-05 Score=77.48 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=81.5
Q ss_pred EEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111 148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~ 226 (377)
|.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|- |.++.++.+|+|++|.+.. ..++-||+-
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSl 279 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSL 279 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEecc
Confidence 44556778888888887543 3467999996 899999999999876555 9998889999999999853 335678874
Q ss_pred CC-CCCCcceeEEEecceecCCCCCCCcccc-----Ce---eEEEcceEEcC
Q 017111 227 PS-HVADRCIRVTIHHCFFDGTRQRHPRVRY-----AK---VHLYNNYTRNW 269 (377)
Q Consensus 227 d~-~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-----G~---~hv~NN~~~n~ 269 (377)
.. .....-.+|++.++.|.++. +.=|++. |. +.+.|-...+.
T Consensus 280 g~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni~m~nv 330 (443)
T PLN02793 280 GKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNIFMENV 330 (443)
T ss_pred cCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeEEEecC
Confidence 21 11122358999999988764 4445531 22 35555555554
No 14
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.93 E-value=0.00013 Score=75.07 Aligned_cols=102 Identities=22% Similarity=0.405 Sum_probs=72.4
Q ss_pred EEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCCC
Q 017111 149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (377)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d 227 (377)
.+..++||.|++|+|.... ....|||.+. .+++|+|.+|.+.-+.| .|.++.++++|+|++|.+. +..++-||+-.
T Consensus 182 ~~~~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~n~~c~-~ghGisiGSlG 258 (404)
T PLN02188 182 ALVECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDD-CISIGQGNSQVTITRIRCG-PGHGISVGSLG 258 (404)
T ss_pred EEEccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCc-EEEEccCCccEEEEEEEEc-CCCcEEeCCCC
Confidence 3334667777777776432 2457999996 89999999999998877 5999989999999999885 34467788732
Q ss_pred C-CCCCcceeEEEecceecCCCCCCCcc
Q 017111 228 S-HVADRCIRVTIHHCFFDGTRQRHPRV 254 (377)
Q Consensus 228 ~-~~~d~~~~VT~hhNlf~~~~~R~Pr~ 254 (377)
. .....-.+|++.++.|.++. +.=|+
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~-~Giri 285 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTT-NGIRI 285 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCC-cEEEE
Confidence 1 11122348999999888763 33344
No 15
>PLN02155 polygalacturonase
Probab=97.91 E-value=0.00011 Score=75.25 Aligned_cols=103 Identities=17% Similarity=0.352 Sum_probs=75.0
Q ss_pred EEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111 148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~ 226 (377)
+.+..++||.|+||+|.... ....|||.+. .+++|+|.+|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+-
T Consensus 171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~ 247 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSL 247 (394)
T ss_pred EEEECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEeccc
Confidence 34445677777777776532 3457999996 899999999999988775 8999889999999998874 346778874
Q ss_pred CCC-CCCcceeEEEecceecCCCCCCCcc
Q 017111 227 PSH-VADRCIRVTIHHCFFDGTRQRHPRV 254 (377)
Q Consensus 227 d~~-~~d~~~~VT~hhNlf~~~~~R~Pr~ 254 (377)
... ....-.+|++.++.|.+.. |.=|+
T Consensus 248 g~~~~~~~V~nV~v~n~~~~~t~-~GirI 275 (394)
T PLN02155 248 AKELNEDGVENVTVSSSVFTGSQ-NGVRI 275 (394)
T ss_pred cccCCCCcEEEEEEEeeEEeCCC-cEEEE
Confidence 221 1222358999999998753 34444
No 16
>PLN02480 Probable pectinesterase
Probab=97.91 E-value=0.0012 Score=66.58 Aligned_cols=99 Identities=10% Similarity=0.224 Sum_probs=68.8
Q ss_pred hhHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeecccc-eEEeCC----------cEEEeeeccEEEe
Q 017111 98 GSLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQR-VKLTGK----------GLRLKECEHVIIC 159 (377)
Q Consensus 98 GSLr~Ai~~~----~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~g-~~I~G~----------gl~i~~a~NVIIR 159 (377)
-||++||++. ..+++|+--.|+.+ ++|.| .+|+||.|.|.. ..|.+. .|.|. +++++++
T Consensus 61 ~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~-a~~f~a~ 137 (343)
T PLN02480 61 TSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE-APHFVAF 137 (343)
T ss_pred ccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE-CCCEEEE
Confidence 4799998752 23555555679884 67888 367999998733 344321 25554 8999999
Q ss_pred eeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceE
Q 017111 160 NLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (377)
Q Consensus 160 nL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglid 199 (377)
||+|+...+ ...-||.+.-.++++.+.+|.|.-..|-|++
T Consensus 138 nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~ 183 (343)
T PLN02480 138 GISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFD 183 (343)
T ss_pred eeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEe
Confidence 999998632 1234666644688999999999887777664
No 17
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.77 E-value=0.0016 Score=62.76 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=78.5
Q ss_pred hHHHhhhcCCCeEEEEEeceEEEecc----eeEeccCcceeec----cc----------ceEEeCCc-------EEEeee
Q 017111 99 SLREGCRMKEPLWIVFEVSGTIHLRS----HLSVSSYKTIDGR----GQ----------RVKLTGKG-------LRLKEC 153 (377)
Q Consensus 99 SLr~Ai~~~~Pr~IVf~vsG~I~l~~----~l~V~sn~TI~G~----G~----------g~~I~G~g-------l~i~~a 153 (377)
+|.+|++...|..+|.--.|++.-.. +|.+.+.+||.|. |. +..|.|.+ +.|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 47789988777777766789987543 5888889999985 22 22334433 444557
Q ss_pred ccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecC-CCCceEeee-----CCceEEEeCceecCCCce
Q 017111 154 EHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDY-DDGLIDITR-----ESTDITVSRCHFSSHDKT 220 (377)
Q Consensus 154 ~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~-~Dglidi~~-----~s~~vTIS~n~f~~h~k~ 220 (377)
++..|+.++|+......+-||.|+ .+ +.-|..|+|..+ .+| |.+.. ...+++|+.|.+.....+
T Consensus 97 ~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~G-I~v~g~~~~~~i~~~vI~GN~~~~~~~G 166 (246)
T PF07602_consen 97 NNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREG-IFVTGTSANPGINGNVISGNSIYFNKTG 166 (246)
T ss_pred CCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCcccc-EEEEeeecCCcccceEeecceEEecCcC
Confidence 788889999987643346688886 44 778899999985 555 43322 224566777766543333
No 18
>PLN03010 polygalacturonase
Probab=97.72 E-value=0.0036 Score=64.56 Aligned_cols=99 Identities=23% Similarity=0.423 Sum_probs=60.5
Q ss_pred eccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCCCCC-C
Q 017111 153 CEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH-V 230 (377)
Q Consensus 153 a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~-~ 230 (377)
++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.| .|.++.++++++|.++... ...++-||+-... .
T Consensus 188 ~~nv~i~~i~I~a~~~s~NTDGiDi~-~s~nV~I~n~~I~~gDD-cIaiksgs~ni~I~~~~C~-~gHGisIGS~g~~~~ 264 (409)
T PLN03010 188 CNYVAISKINILAPETSPNTDGIDIS-YSTNINIFDSTIQTGDD-CIAINSGSSNINITQINCG-PGHGISVGSLGADGA 264 (409)
T ss_pred cccEEEEEEEEeCCCCCCCCCceeee-ccceEEEEeeEEecCCC-eEEecCCCCcEEEEEEEeE-CcCCEEEccCCCCCC
Confidence 334444444443321 2357999996 78999999998887755 4899888777776655543 2235667764221 1
Q ss_pred CCcceeEEEecceecCCCCCCCccc
Q 017111 231 ADRCIRVTIHHCFFDGTRQRHPRVR 255 (377)
Q Consensus 231 ~d~~~~VT~hhNlf~~~~~R~Pr~r 255 (377)
.+.-.+|++.++.|.+.. +.=|++
T Consensus 265 ~~~V~nV~v~n~~i~~t~-~GirIK 288 (409)
T PLN03010 265 NAKVSDVHVTHCTFNQTT-NGARIK 288 (409)
T ss_pred CCeeEEEEEEeeEEeCCC-cceEEE
Confidence 122247888888887653 334443
No 19
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.72 E-value=0.00042 Score=59.25 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=71.9
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCc-eeEecC
Q 017111 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK-TMLIGA 225 (377)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k-~~LiG~ 225 (377)
+|.+....++.|++-+|+. ...+|.+. ...++.|+.|.|++... .+.+. .+..++|++|.|.+... ++.+..
T Consensus 25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~~-~i~~~-~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNGS-GIYVS-GSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-SE-EEECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEccc-eEEEE-ecCCceecCcEEEcCCCccEEEec
Confidence 5677666667777888876 34677776 55778888888887773 35553 67788888888876544 444432
Q ss_pred CCCCCCCcceeEEEecceecCCCCCCCcccc-C--eeEEEcceEEcCccceeeecCCce-EEEEceeE
Q 017111 226 DPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-A--KVHLYNNYTRNWGIYAVCASVDSQ-IYSQCNIY 289 (377)
Q Consensus 226 ~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G--~~hv~NN~~~n~~~~ai~~~~~a~-v~~e~N~F 289 (377)
....+++.+|.|.++....=.+.. . .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus 98 -------~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 98 -------SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF 158 (158)
T ss_dssp -------EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred -------cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence 012577788887776643333322 2 466788887776667775555554 77777766
No 20
>PLN02197 pectinesterase
Probab=97.71 E-value=0.008 Score=64.60 Aligned_cols=133 Identities=22% Similarity=0.347 Sum_probs=82.7
Q ss_pred cccccccCCcccccCCCCCCCCCceEEecCCCCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cC
Q 017111 62 CSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SY 131 (377)
Q Consensus 62 ~~~~~~a~~a~Gfg~~ttGG~gG~vv~VT~l~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn 131 (377)
..++.|. +.+.|+.+-||.++.+-..-..+.+|.| ++++||++ ...|+||+--.|++ .+.|.|. +|
T Consensus 251 ~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~n 326 (588)
T PLN02197 251 ADRKLMA--KAGRGANAGGGGGGKIKATHVVAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIY--NEQVTIPKKKNN 326 (588)
T ss_pred cchhhhc--cCcccccccccccccccccEEEcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceE--EEEEEccCCCce
Confidence 3445454 3344445556665543322224555665 78889975 23455555567988 4667774 68
Q ss_pred cceeecccceEEe-C-------Cc--------EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC
Q 017111 132 KTIDGRGQRVKLT-G-------KG--------LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD 194 (377)
Q Consensus 132 ~TI~G~G~g~~I~-G-------~g--------l~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~ 194 (377)
+||+|.|.+-+|. + .| +.+ .+++++.|||+|+...+. ..-|+-++-.++.+.+.+|.|.-..
T Consensus 327 i~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ 405 (588)
T PLN02197 327 IFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ 405 (588)
T ss_pred EEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC
Confidence 9999997654443 1 11 333 489999999999986432 2344544435789999999998766
Q ss_pred CCceE
Q 017111 195 DGLID 199 (377)
Q Consensus 195 Dglid 199 (377)
|-|++
T Consensus 406 DTLy~ 410 (588)
T PLN02197 406 DTLYV 410 (588)
T ss_pred cceEe
Confidence 65543
No 21
>PLN02793 Probable polygalacturonase
Probab=97.69 E-value=0.0038 Score=65.00 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=89.7
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L 222 (377)
|++.+++||.|++|+++....+ .|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|++|.|...+-+..
T Consensus 180 i~f~~~~nv~v~gitl~nSp~~---~i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQQM---HIAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEeeccEEEECeEEEcCCCe---EEEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence 6777899999999999986532 36665 78999999999953 6899 899 578999999999998888887
Q ss_pred ecCCCCCCCCcceeEEEecceecCCCC-------CCCcc-ccCeeEEEcceEEcCcccee--ee-----cCCceEEEEce
Q 017111 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRV-RYAKVHLYNNYTRNWGIYAV--CA-----SVDSQIYSQCN 287 (377)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~ai--~~-----~~~a~v~~e~N 287 (377)
+.+.. .+|++.++.+..... +.... ..-.+.+.|+.+.+.. +++ -. +.-..|.+++-
T Consensus 254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni 325 (443)
T PLN02793 254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI 325 (443)
T ss_pred ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence 75431 257777766532211 11100 0114678888777643 232 11 11234566666
Q ss_pred eEecCCcccee
Q 017111 288 IYEAGQKKMAF 298 (377)
Q Consensus 288 ~F~~g~~~~~~ 298 (377)
..++...+..+
T Consensus 326 ~m~nv~~pI~I 336 (443)
T PLN02793 326 FMENVSNPIII 336 (443)
T ss_pred EEecCCceEEE
Confidence 66665555443
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.68 E-value=0.0017 Score=67.66 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=76.9
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L 222 (377)
|++.+++||.|++|+++.... =.|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|.+|.|..-+-+.-
T Consensus 141 l~f~~~~nv~I~gitl~NSp~---w~i~i~-~c~nV~i~~l~I~ap~~spNTDG-IDi-~~S~nV~I~n~~I~tGDDCIa 214 (456)
T PLN03003 141 LKFRSCNNLRLSGLTHLDSPM---AHIHIS-ECNYVTISSLRINAPESSPNTDG-IDV-GASSNVVIQDCIIATGDDCIA 214 (456)
T ss_pred EEEEecCCcEEeCeEEecCCc---EEEEEe-ccccEEEEEEEEeCCCCCCCCCc-Eee-cCcceEEEEecEEecCCCeEE
Confidence 677889999999999998653 246675 78999999999864 5899 999 568999999999998888887
Q ss_pred ecCCCCCCCCcceeEEEecceecCCC-------CCCCcc-ccCeeEEEcceEEcC
Q 017111 223 IGADPSHVADRCIRVTIHHCFFDGTR-------QRHPRV-RYAKVHLYNNYTRNW 269 (377)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~-------~R~Pr~-r~G~~hv~NN~~~n~ 269 (377)
+.+.. .+|++-++.+.... .+.... ..-.+++.|+.+.+.
T Consensus 215 iksgs-------~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T 262 (456)
T PLN03003 215 INSGT-------SNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGT 262 (456)
T ss_pred eCCCC-------ccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECC
Confidence 76542 14666665543211 111100 011467888887764
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.66 E-value=0.0022 Score=60.24 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=41.0
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (377)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~ 226 (377)
||.+..+++++|++-.|+... .||.+. .+.+..|..|.|+....| |.+ .++...+|+.|.|.+...++.+..+
T Consensus 59 GI~~~~s~~~~i~~n~i~~n~----~Gi~l~-~s~~~~I~~N~i~~n~~G-I~l-~~s~~~~I~~N~i~~~~~GI~l~~s 131 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISNNG----YGIYLM-GSSNNTISNNTISNNGYG-IYL-YGSSNNTISNNTISNNGYGIYLSSS 131 (236)
T ss_pred EEEEEccCCCEEEeEEEEccC----CCEEEE-cCCCcEEECCEecCCCce-EEE-eeCCceEEECcEEeCCCEEEEEEeC
Confidence 344444445555555554321 455554 333345555555555554 333 2344555555555544444444322
Q ss_pred CCCCCCcceeEEEecceecCC
Q 017111 227 PSHVADRCIRVTIHHCFFDGT 247 (377)
Q Consensus 227 d~~~~d~~~~VT~hhNlf~~~ 247 (377)
. +.++.+|.|.++
T Consensus 132 ~--------~n~I~~N~i~~n 144 (236)
T PF05048_consen 132 S--------NNTITGNTISNN 144 (236)
T ss_pred C--------CCEEECeEEeCC
Confidence 1 345555555555
No 24
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.64 E-value=0.0031 Score=64.22 Aligned_cols=183 Identities=17% Similarity=0.260 Sum_probs=134.4
Q ss_pred ceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceeecccceEEeCC---cEEEe---------e
Q 017111 85 PLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGK---GLRLK---------E 152 (377)
Q Consensus 85 ~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V~sn~TI~G~G~g~~I~G~---gl~i~---------~ 152 (377)
++|.+-=.+| |.+||.+-. .|..+.+-++.++++|.|.+...|+|+|+.+.|.+. +|++. +
T Consensus 47 kt~~~~P~eD-----le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g 119 (386)
T PF01696_consen 47 KTYWMEPGED-----LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG 119 (386)
T ss_pred EEEEcCCCcC-----HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence 3566666677 999999876 246678888888999999999999999988888543 25442 4
Q ss_pred eccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCC
Q 017111 153 CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVAD 232 (377)
Q Consensus 153 a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d 232 (377)
-.+|.+.|++|.... ...++-+. ...++.|-.|.|....--.|+.. ....|..|.|..-+|++...+
T Consensus 120 M~~VtF~ni~F~~~~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~------- 186 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG------- 186 (386)
T ss_pred eeeeEEEEEEEecCC--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC-------
Confidence 579999999999754 23566665 67899999999999887778774 478899999998888775322
Q ss_pred cceeEEEecceecCCCCCCCccccCeeEEEcceEEcCccceeeecCCceEEEEceeEecCC
Q 017111 233 RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293 (377)
Q Consensus 233 ~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~ 293 (377)
..++++.+|.|+.+.-=- +..|...+.+|...+-.= .+-... ...+.+|.|....
T Consensus 187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~C-f~l~~g--~g~i~~N~v~~~~ 241 (386)
T PF01696_consen 187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECGC-FVLMKG--TGSIKHNMVCGPN 241 (386)
T ss_pred -cceEEeeheeeeheEEEE--EecCCeEEecceecccce-EEEEcc--cEEEeccEEeCCC
Confidence 246888999998876532 445888999998887642 222222 3344788887553
No 25
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.61 E-value=0.0012 Score=61.96 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=98.0
Q ss_pred CCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEec
Q 017111 145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIG 224 (377)
Q Consensus 145 G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG 224 (377)
..++.+..+.++.|++.+|+.. ..||.+. .++++-|..|.++....| |.+. .+.+.+|++|.|.+...++++.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~G-i~l~-~s~~~~I~~N~i~~n~~GI~l~ 107 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYG-IYLM-GSSNNTISNNTISNNGYGIYLY 107 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCC-EEEE-cCCCcEEECCEecCCCceEEEe
Confidence 3456777899999999999976 5789887 788899999999999988 6664 4555599999999887777765
Q ss_pred CCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcCccceee-ecCCceEEEEceeEec
Q 017111 225 ADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVC-ASVDSQIYSQCNIYEA 291 (377)
Q Consensus 225 ~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~ai~-~~~~a~v~~e~N~F~~ 291 (377)
.+. ..++-+|.|. ....-=.+.. ....+.+|.+.+-..+++. ........+.+|.|.+
T Consensus 108 ~s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 108 GSS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred eCC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence 442 3678888887 3333333332 4678999999887667877 5555567778999943
No 26
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.61 E-value=0.00022 Score=71.04 Aligned_cols=105 Identities=28% Similarity=0.499 Sum_probs=75.7
Q ss_pred cEEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecC
Q 017111 147 GLRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA 225 (377)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~ 225 (377)
.+.+..++||.|++|+|+... ....|||.+. ++++|.|++|.+..+.| .|.++.++.+|+|++|.|.. ..++-||+
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD-~Iaiks~~~ni~v~n~~~~~-ghGisiGS 193 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDD-CIAIKSGSGNILVENCTCSG-GHGISIGS 193 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSE-SEEESSEECEEEEESEEEES-SSEEEEEE
T ss_pred EEEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccC-cccccccccceEEEeEEEec-cccceeee
Confidence 466777999999999998653 2457999997 78999999999987755 59998888899999999973 44577775
Q ss_pred CCCCCC-CcceeEEEecceecCCCCCCCccc
Q 017111 226 DPSHVA-DRCIRVTIHHCFFDGTRQRHPRVR 255 (377)
Q Consensus 226 ~d~~~~-d~~~~VT~hhNlf~~~~~R~Pr~r 255 (377)
...... ..-.+|+|.++.|.++. |.-|++
T Consensus 194 ~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK 223 (326)
T PF00295_consen 194 EGSGGSQNDIRNVTFENCTIINTD-NGIRIK 223 (326)
T ss_dssp ESSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred ccCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence 322110 11248999999887753 555553
No 27
>PLN03010 polygalacturonase
Probab=97.54 E-value=0.0036 Score=64.55 Aligned_cols=172 Identities=22% Similarity=0.268 Sum_probs=108.5
Q ss_pred EEEEeceEEEecce------------eEec--cCcceeecccceEEeCCc------EEEeeeccEEEeeeEEeCCCCCCC
Q 017111 112 IVFEVSGTIHLRSH------------LSVS--SYKTIDGRGQRVKLTGKG------LRLKECEHVIICNLEFEGGKGPDV 171 (377)
Q Consensus 112 IVf~vsG~I~l~~~------------l~V~--sn~TI~G~G~g~~I~G~g------l~i~~a~NVIIRnL~ir~g~~~~~ 171 (377)
|.|.+.|+|..... +.+. .|++|.|.| +|.|.| |++.+++||.|++|+++....+
T Consensus 107 v~l~l~G~l~~~~d~~~w~~~~~~~wi~f~~v~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~-- 181 (409)
T PLN03010 107 IKVQLDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPKN-- 181 (409)
T ss_pred EEEEEccEEEccCChhhccCCCCcceEEEecccccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCce--
Confidence 45666787765431 2222 678888853 577755 7788999999999999986532
Q ss_pred CceEecCCCceEEEEceeee-----cCCCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecC
Q 017111 172 DAIQIKPKSKHIWIDRCSLR-----DYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDG 246 (377)
Q Consensus 172 DaI~i~~~s~nVwIDHcs~s-----~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~ 246 (377)
.|.+. .+++|.|++..+. ...|| ||+ ..+++|+|++|.|..-+-+.-+.+... ..+|+.-.|...|
T Consensus 182 -~i~i~-~~~nv~i~~i~I~a~~~s~NTDG-iDi-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gH 252 (409)
T PLN03010 182 -HISIK-TCNYVAISKINILAPETSPNTDG-IDI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGH 252 (409)
T ss_pred -EEEEe-ccccEEEEEEEEeCCCCCCCCCc-eee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcC
Confidence 46675 7899999999885 46899 899 568999999999999888888865421 1344444443221
Q ss_pred C-----CCCCCc-cccCeeEEEcceEEcCccceee--ecC-----CceEEEEceeEecCCcccee
Q 017111 247 T-----RQRHPR-VRYAKVHLYNNYTRNWGIYAVC--ASV-----DSQIYSQCNIYEAGQKKMAF 298 (377)
Q Consensus 247 ~-----~~R~Pr-~r~G~~hv~NN~~~n~~~~ai~--~~~-----~a~v~~e~N~F~~g~~~~~~ 298 (377)
- ..+... -..-.+++.|+.+.+.. +++. ... =..|.+|+-.++....+..+
T Consensus 253 GisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I 316 (409)
T PLN03010 253 GISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIKTWQGGQGYARNISFENITLINTKNPIII 316 (409)
T ss_pred CEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEEEecCCCEEEEEeEEEeEEEecCCccEEE
Confidence 1 001000 00114678888877642 2321 111 12466666666666555444
No 28
>PLN02176 putative pectinesterase
Probab=97.38 E-value=0.0025 Score=64.11 Aligned_cols=117 Identities=16% Similarity=0.290 Sum_probs=75.9
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe--CC--------cEEEee
Q 017111 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--GK--------GLRLKE 152 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~--G~--------gl~i~~ 152 (377)
+.+|.| |+++||++ ...+++|+--.|+. .+.|.|. +|+||.|.|.+-+|. +. .+.+ .
T Consensus 44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~ 120 (340)
T PLN02176 44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-Y 120 (340)
T ss_pred CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-E
Confidence 445555 78899965 22345555457988 4678884 689999998654443 11 2455 4
Q ss_pred eccEEEeeeEEeCCCC-------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 153 CEHVIICNLEFEGGKG-------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 153 a~NVIIRnL~ir~g~~-------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
+++++.+||+|+...+ ...-|+-+.-.++.+-+.+|.|.-..|-|++- ...--..+|.|.
T Consensus 121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIe 187 (340)
T PLN02176 121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVIS 187 (340)
T ss_pred CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEE
Confidence 8999999999997532 11234444335788999999998877776653 223444555555
No 29
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.35 E-value=0.0019 Score=64.41 Aligned_cols=88 Identities=22% Similarity=0.461 Sum_probs=68.0
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L 222 (377)
|++.+++|+.|++|+++....+ .+.+. .+++|+|++.++.. ..|| ||+ ..+.+|+|.+|.|...+-+.-
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Ia 168 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIA 168 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEE
T ss_pred eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccc
Confidence 7888899999999999987543 47775 78999999999863 4789 899 468999999999998777776
Q ss_pred ecCCCCCCCCcceeEEEecceecCCC
Q 017111 223 IGADPSHVADRCIRVTIHHCFFDGTR 248 (377)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~ 248 (377)
+.+.. .+|++.+++|.+..
T Consensus 169 iks~~-------~ni~v~n~~~~~gh 187 (326)
T PF00295_consen 169 IKSGS-------GNILVENCTCSGGH 187 (326)
T ss_dssp ESSEE-------CEEEEESEEEESSS
T ss_pred ccccc-------cceEEEeEEEeccc
Confidence 65432 16888888886543
No 30
>PLN02155 polygalacturonase
Probab=97.32 E-value=0.0074 Score=62.00 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=90.4
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeee-----cCCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLR-----DYDDGLIDITRESTDITVSRCHFSSHDKTML 222 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s-----~~~Dglidi~~~s~~vTIS~n~f~~h~k~~L 222 (377)
|++.+++||.|++|+++.... =.|.+. .+++|.|++.++. ...|| ||+ ..+++|+|++|.|..-+-+..
T Consensus 148 i~~~~~~nv~i~gitl~nSp~---w~i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQV---SHMTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCC---eEEEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence 677789999999999997643 246665 7899999999995 35798 898 568999999999998887887
Q ss_pred ecCCCCCCCCcceeEEEecceecC-------CCCCCCc-cccCeeEEEcceEEcCccceeee----c-CC---ceEEEEc
Q 017111 223 IGADPSHVADRCIRVTIHHCFFDG-------TRQRHPR-VRYAKVHLYNNYTRNWGIYAVCA----S-VD---SQIYSQC 286 (377)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~-------~~~R~Pr-~r~G~~hv~NN~~~n~~~~ai~~----~-~~---a~v~~e~ 286 (377)
++... -+|++.++.+.. ...+.+. -..-.+.+.|+.+.+.. +++.. + .+ ..|.+++
T Consensus 222 ik~gs-------~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~GirIKT~~~~~gG~v~nI~f~n 293 (394)
T PLN02155 222 IGPGT-------RNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVRIKSWARPSTGFVRNVFFQD 293 (394)
T ss_pred cCCCC-------ceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEEEEEecCCCCEEEEEEEEEe
Confidence 76542 257776665542 1112221 11125678888887643 34322 1 11 2455566
Q ss_pred eeEecCCcccee
Q 017111 287 NIYEAGQKKMAF 298 (377)
Q Consensus 287 N~F~~g~~~~~~ 298 (377)
-.++....+..+
T Consensus 294 i~m~~v~~pI~i 305 (394)
T PLN02155 294 LVMKNVENPIII 305 (394)
T ss_pred EEEcCccccEEE
Confidence 666665555444
No 31
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.30 E-value=0.0098 Score=61.27 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=92.0
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L 222 (377)
|.+..++||.|++|+|+....+ .|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|.+|.|..-+-+.-
T Consensus 158 i~f~~~~nv~i~gitl~nSp~w---~i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKFF---HIALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCCe---EEEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence 4667899999999999986543 46675 78999999999864 5799 899 568999999999998888888
Q ss_pred ecCCCCCCCCcceeEEEecceecCCCC-------CCCc-cccCeeEEEcceEEcCccceeee---------cCCceEEEE
Q 017111 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPR-VRYAKVHLYNNYTRNWGIYAVCA---------SVDSQIYSQ 285 (377)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr-~r~G~~hv~NN~~~n~~~~ai~~---------~~~a~v~~e 285 (377)
+.+.. -+|++-++.+..... +... -....+.+.|+.+.+.. +++.. +.-..|.++
T Consensus 232 iksg~-------~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ 303 (404)
T PLN02188 232 IGQGN-------SQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE 303 (404)
T ss_pred EccCC-------ccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence 86432 156666655532111 1000 00124678888887753 33321 111357777
Q ss_pred ceeEecCCccceee
Q 017111 286 CNIYEAGQKKMAFK 299 (377)
Q Consensus 286 ~N~F~~g~~~~~~~ 299 (377)
+-.+++...+..+.
T Consensus 304 ni~m~~v~~pI~i~ 317 (404)
T PLN02188 304 NIVMNNVTNPIIID 317 (404)
T ss_pred eEEecCccceEEEE
Confidence 77777766655543
No 32
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.28 E-value=0.0037 Score=64.80 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=93.4
Q ss_pred cceeecccceEEeCCcEEEeeeccEEEeeeEEeCCC--C-----------------CCCCceEecCCCceEEEEceeeec
Q 017111 132 KTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK--G-----------------PDVDAIQIKPKSKHIWIDRCSLRD 192 (377)
Q Consensus 132 ~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~--~-----------------~~~DaI~i~~~s~nVwIDHcs~s~ 192 (377)
+||.|.|....-...+|.++.|+++.|++.+|++.. + ....+|.+. .++++.|.+|+++.
T Consensus 122 LtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V~~N~I~g 200 (455)
T TIGR03808 122 LTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIVARNTIIG 200 (455)
T ss_pred eEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEEECCEEEc
Confidence 344454543333344678888999999999998752 0 012345554 56788999999988
Q ss_pred CCCCceEeeeC-----------------------------------CceEEEeCceecCCCceeEecCCCCCC-------
Q 017111 193 YDDGLIDITRE-----------------------------------STDITVSRCHFSSHDKTMLIGADPSHV------- 230 (377)
Q Consensus 193 ~~Dglidi~~~-----------------------------------s~~vTIS~n~f~~h~k~~LiG~~d~~~------- 230 (377)
..|+.|-+.+. +.+++|+.|.++++.+-.+.+.+.+..
T Consensus 201 ~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~~N~~ 280 (455)
T TIGR03808 201 ANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQITGNSV 280 (455)
T ss_pred cCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEECcEe
Confidence 88865555422 457888888888877544433322211
Q ss_pred CC-c--ceeEEE-ec-ceecCCCCCCCccc-----c---Ce-eEEEcceEEcCc-----------cceeeecCCceEEEE
Q 017111 231 AD-R--CIRVTI-HH-CFFDGTRQRHPRVR-----Y---AK-VHLYNNYTRNWG-----------IYAVCASVDSQIYSQ 285 (377)
Q Consensus 231 ~d-~--~~~VT~-hh-Nlf~~~~~R~Pr~r-----~---G~-~hv~NN~~~n~~-----------~~ai~~~~~a~v~~e 285 (377)
.+ | .++.-| ++ +.+.++....-... | |. .-+-.|++.|.. ..+++...++.-.+.
T Consensus 281 ~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~ead~~~~ 360 (455)
T TIGR03808 281 SDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYVEADTAVT 360 (455)
T ss_pred eeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEEEecceec
Confidence 11 1 122222 22 45555544444432 2 33 356667766531 134555566666666
Q ss_pred ceeEecCCc
Q 017111 286 CNIYEAGQK 294 (377)
Q Consensus 286 ~N~F~~g~~ 294 (377)
+|+-|+.|.
T Consensus 361 ~n~~e~ap~ 369 (455)
T TIGR03808 361 GNVVENAPS 369 (455)
T ss_pred cceecCCcc
Confidence 888877764
No 33
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.015 Score=58.35 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=69.2
Q ss_pred eceEEEecceeEeccCcceeecccceEEeCCc----EEEeeeccEEEeeeEEeCCCC---CCCCceEecCCCceEEEEce
Q 017111 116 VSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG----LRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRC 188 (377)
Q Consensus 116 vsG~I~l~~~l~V~sn~TI~G~G~g~~I~G~g----l~i~~a~NVIIRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHc 188 (377)
++|.. ...+.|+.-+|+.|. .++++.|.+ +++. +.++|||.|++|+... .-+-+|-+....+.--|.||
T Consensus 39 i~g~~--~g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N 114 (408)
T COG3420 39 ISGRY--AGNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHN 114 (408)
T ss_pred Eeeee--cccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcc
Confidence 44655 567888888999997 677787654 6775 9999999999996432 22456666556777889999
Q ss_pred eeecCCCCceEeeeCCceEEEeCceec
Q 017111 189 SLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 189 s~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
++..+..| |-+ .++.++-|--|.+.
T Consensus 115 ~l~~n~~G-i~l-~~s~d~~i~~n~i~ 139 (408)
T COG3420 115 DLIGNSFG-IYL-HGSADVRIEGNTIQ 139 (408)
T ss_pred cccccceE-EEE-eccCceEEEeeEEe
Confidence 98888888 445 46777777777765
No 34
>PLN02432 putative pectinesterase
Probab=97.24 E-value=0.018 Score=57.04 Aligned_cols=112 Identities=15% Similarity=0.272 Sum_probs=73.3
Q ss_pred hhHHHhhhc----CCCeEEEEEeceEEEecceeEe---ccCcceeecccceEEe----C------CcEEEeeeccEEEee
Q 017111 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT----G------KGLRLKECEHVIICN 160 (377)
Q Consensus 98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~g~~I~----G------~gl~i~~a~NVIIRn 160 (377)
-|+++||+. ...+++|+--.|+. .+.|.| .+|+||.|.+..-++. + ..+.+ .++|++++|
T Consensus 24 ~TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~n 100 (293)
T PLN02432 24 RKIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRF 100 (293)
T ss_pred cCHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEe
Confidence 468888865 22244444456887 566777 3789999997554443 1 11444 489999999
Q ss_pred eEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 161 LEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 161 L~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
|+|+...+...-|+.+.-.++++.+.+|.|.-..|-|++- ...--+.+|.|.
T Consensus 101 lt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~ 152 (293)
T PLN02432 101 LTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIE 152 (293)
T ss_pred eEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEE
Confidence 9999865433345554435788999999998877776642 223444555555
No 35
>PLN02773 pectinesterase
Probab=97.23 E-value=0.024 Score=56.64 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=64.0
Q ss_pred hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEeC------------------C------
Q 017111 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLTG------------------K------ 146 (377)
Q Consensus 98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~G------------------~------ 146 (377)
-|+++||+. ...+++||--.|+. .+.|.|. +|+||+|++..-+|.- .
T Consensus 18 ~TIq~Aida~P~~~~~~~~I~Ik~G~Y--~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~Sa 95 (317)
T PLN02773 18 CTVQDAIDAVPLCNRCRTVIRVAPGVY--RQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCG 95 (317)
T ss_pred cCHHHHHhhchhcCCceEEEEEeCceE--EEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCce
Confidence 468888865 22345555456887 4677773 5799999875433321 0
Q ss_pred cEEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017111 147 GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (377)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglid 199 (377)
.+.+ .++|++.+||+|+...+. ..-|+.+.-.++.+-+.+|.|.-..|=|++
T Consensus 96 Tv~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~ 148 (317)
T PLN02773 96 TVIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYL 148 (317)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEe
Confidence 1334 489999999999976431 233444433578899999999766665553
No 36
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.22 E-value=0.026 Score=59.98 Aligned_cols=103 Identities=23% Similarity=0.419 Sum_probs=68.2
Q ss_pred CCCCCh---hHHHhhhc-----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-----Cc--------
Q 017111 93 ADDGPG---SLREGCRM-----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG-------- 147 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~-----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-----~g-------- 147 (377)
+.+|.| ++++||+. ...|++|+--.|++ .+.|.|. +|+||+|.|.+-+|. + .+
T Consensus 230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT 307 (529)
T PLN02170 230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT 307 (529)
T ss_pred cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence 445554 68889963 12356666567988 4667773 699999998655543 2 11
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 017111 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (377)
+.+ .+++++.|||+|+...+. ..-|+.++-.++.+.+.+|.|.-..|-|.
T Consensus 308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy 358 (529)
T PLN02170 308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLY 358 (529)
T ss_pred EEE-EcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcce
Confidence 333 489999999999986432 23344444357889999999976555544
No 37
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.21 E-value=0.021 Score=60.92 Aligned_cols=120 Identities=22% Similarity=0.478 Sum_probs=76.9
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEE-eCC-----c--------E
Q 017111 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------L 148 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I-~G~-----g--------l 148 (377)
+.+|.| ++++||++ ...|+||+--.|++ .+.|.|. +|+||+|.|.+-+| .+. + +
T Consensus 235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 312 (541)
T PLN02416 235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL 312 (541)
T ss_pred CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence 334655 67888865 33466666667988 4667773 68999999865444 331 1 4
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeeeCCceEEEe
Q 017111 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDITVS 210 (377)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~vTIS 210 (377)
.+ .+++++.|||+|+...+. ..-|+-++-.++.+-+-+|.|.-..|-| +|+.-+....-++
T Consensus 313 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 391 (541)
T PLN02416 313 AV-SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVVFQ 391 (541)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeeccceEEEe
Confidence 44 489999999999976432 2234433334788999999997654444 4443344455666
Q ss_pred Cceec
Q 017111 211 RCHFS 215 (377)
Q Consensus 211 ~n~f~ 215 (377)
+|.|.
T Consensus 392 ~c~i~ 396 (541)
T PLN02416 392 ACNIV 396 (541)
T ss_pred ccEEE
Confidence 66664
No 38
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.12 E-value=0.026 Score=61.47 Aligned_cols=197 Identities=19% Similarity=0.370 Sum_probs=112.5
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-----c--------E
Q 017111 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-----g--------l 148 (377)
+.+|.| ++++||+. ...|+||+--.|++ .+.|.|. .|+||+|.|.+-+|. +. | +
T Consensus 255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~ 332 (670)
T PLN02217 255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV 332 (670)
T ss_pred CCCCCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence 445655 68889875 22355555557887 5677775 478999998655543 21 1 3
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeeeCCceEEEe
Q 017111 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVS 210 (377)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------glidi~~~s~~vTIS 210 (377)
.+ .+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-..| |.+|+.-+....-++
T Consensus 333 ~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 411 (670)
T PLN02217 333 AI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQ 411 (670)
T ss_pred EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEE
Confidence 34 489999999999976532 23455554357889999999975443 445554555567778
Q ss_pred CceecCCC-----ceeEecCCCCCCCCcceeEEEecceecCCCCCC------------CccccCeeEEEcceEEc-----
Q 017111 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH------------PRVRYAKVHLYNNYTRN----- 268 (377)
Q Consensus 211 ~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~------------Pr~r~G~~hv~NN~~~n----- 268 (377)
+|.|.-.. ++.+--.+... .+...-+.|++|.+.....-. |.-.+.++-+.|.++.+
T Consensus 412 ~C~I~~r~~~~~~~~~ITAqgr~~-~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~P~ 490 (670)
T PLN02217 412 NCTLLVRKPLLNQACPITAHGRKD-PRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVPPE 490 (670)
T ss_pred ccEEEEccCCCCCceeEecCCCCC-CCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCeEcCc
Confidence 88876321 22222111000 011235788999886643211 11123456777776643
Q ss_pred -CccceeeecCCceEEEEceeEecCC
Q 017111 269 -WGIYAVCASVDSQIYSQCNIYEAGQ 293 (377)
Q Consensus 269 -~~~~ai~~~~~a~v~~e~N~F~~g~ 293 (377)
|..+.-......-.+.|.+-+.+|.
T Consensus 491 GW~~W~~~~~~~t~~yaEY~n~GpGa 516 (670)
T PLN02217 491 GWQPWLGDFGLNTLFYSEVQNTGPGA 516 (670)
T ss_pred ccCccCCCCCCCceEEEEeccccCCC
Confidence 3222111222334566766666664
No 39
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.08 E-value=0.041 Score=58.51 Aligned_cols=103 Identities=22% Similarity=0.402 Sum_probs=67.5
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe--------CC------cE
Q 017111 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------GL 148 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~--------G~------gl 148 (377)
+.+|.| ++++||++ ...|++|+--.|+++ +.|.|. +|+||+|.|.+-++. |. .+
T Consensus 223 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~ 300 (530)
T PLN02933 223 AIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATV 300 (530)
T ss_pred CCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEE
Confidence 444555 68889865 223555555579884 667774 688999997554443 11 13
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 017111 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (377)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (377)
.+ .+++++.|||+|+...+. ..-|+-++-.++.+-+.+|.|.-..|-|+
T Consensus 301 ~v-~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy 350 (530)
T PLN02933 301 GV-KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLY 350 (530)
T ss_pred EE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccc
Confidence 44 489999999999976432 23445444357889999999976655544
No 40
>PLN02497 probable pectinesterase
Probab=96.98 E-value=0.062 Score=54.08 Aligned_cols=111 Identities=13% Similarity=0.221 Sum_probs=71.3
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEE-eC---------CcEEEeeeccEEEeee
Q 017111 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TG---------KGLRLKECEHVIICNL 161 (377)
Q Consensus 99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I-~G---------~gl~i~~a~NVIIRnL 161 (377)
|+++||++ ...+++|+--.|+. .+.|.|. +++||.|+|..-++ .. ..+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 68888865 23344455457888 5667773 68999999753333 21 12444 4899999999
Q ss_pred EEeCCCCC--------CCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 162 EFEGGKGP--------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 162 ~ir~g~~~--------~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
+|+...+. ..-|+.+.-.++++-+.+|.|.-..|-|++- ...--..+|.|.
T Consensus 123 T~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 181 (331)
T PLN02497 123 TFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQ 181 (331)
T ss_pred EEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEE
Confidence 99975321 1234444435788999999998887777643 223344555554
No 41
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.05 Score=57.83 Aligned_cols=102 Identities=20% Similarity=0.431 Sum_probs=66.5
Q ss_pred CCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-----Cc--------EE
Q 017111 94 DDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG--------LR 149 (377)
Q Consensus 94 dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-----~g--------l~ 149 (377)
.+|.| ++++||++ ...|++|+--.|++ ++.|.|. +|+||+|.|.+-+|. + .| +.
T Consensus 212 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~ 289 (520)
T PLN02201 212 ADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFA 289 (520)
T ss_pred CCCCCCccCHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEE
Confidence 34544 68888865 22355555557988 4667774 589999997544433 1 11 33
Q ss_pred EeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 017111 150 LKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (377)
Q Consensus 150 i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (377)
+ .+++++.+||+|+...+. ..-|+-++-.++...+.+|.|.-..|-|+
T Consensus 290 v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy 338 (520)
T PLN02201 290 V-SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLY 338 (520)
T ss_pred E-ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeE
Confidence 3 489999999999976432 23444444357889999999976555544
No 42
>smart00656 Amb_all Amb_all domain.
Probab=96.97 E-value=0.016 Score=53.56 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=83.5
Q ss_pred cCcceeecccceEEeCCcEEEeeeccEEEeeeEEeCCC----C-CCCC-ceEecCCCceEEEEceeeecCCCCceEeeeC
Q 017111 130 SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK----G-PDVD-AIQIKPKSKHIWIDRCSLRDYDDGLIDITRE 203 (377)
Q Consensus 130 sn~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~----~-~~~D-aI~i~~~s~nVwIDHcs~s~~~Dglidi~~~ 203 (377)
.|++|.+........+.+|.+.+++||.|-+.+|..+. . ...| .+.+..++.+|-|-.|.|....-++|--..+
T Consensus 45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d 124 (190)
T smart00656 45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD 124 (190)
T ss_pred eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence 47777775332222356788888999999999999762 1 1133 4455546788888888887654444433222
Q ss_pred Cc------eEEEeCceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcC
Q 017111 204 ST------DITVSRCHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNW 269 (377)
Q Consensus 204 s~------~vTIS~n~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~ 269 (377)
.+ .||+.+|+|.+.. +.-++. .-.+=+.+|+|.+.....--.+. +++.+.||||++.
T Consensus 125 ~~~~~~~~~vT~h~N~~~~~~~R~P~~r---------~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 125 SDTDDGKMRVTIAHNYFGNLRQRAPRVR---------FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CccccccceEEEECcEEcCcccCCCccc---------CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 22 6999999998531 111111 11567788999887644333332 5789999999864
No 43
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.051 Score=58.11 Aligned_cols=120 Identities=18% Similarity=0.440 Sum_probs=77.7
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-------Cc------E
Q 017111 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------KG------L 148 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-------~g------l 148 (377)
+.+|.| ++++||++ ...|.||+--.|++ ++.|.|. +|+||+|.|.+.+|. + .+ +
T Consensus 241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~ 318 (548)
T PLN02301 241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV 318 (548)
T ss_pred CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence 334655 68888865 23356666567998 4677774 689999998655443 2 11 2
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeeeCCceEEEe
Q 017111 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS 210 (377)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~vTIS 210 (377)
.+ .+++++.|||+|+...+. ..-|+-++-.++.+.+.+|.|.-..|- .+|+.-+....-++
T Consensus 319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 397 (548)
T PLN02301 319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVVFQ 397 (548)
T ss_pred EE-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecccceeEEe
Confidence 33 479999999999976432 224444443578899999999765544 44444444456666
Q ss_pred Cceec
Q 017111 211 RCHFS 215 (377)
Q Consensus 211 ~n~f~ 215 (377)
+|.|.
T Consensus 398 ~c~i~ 402 (548)
T PLN02301 398 NCKIV 402 (548)
T ss_pred ccEEE
Confidence 77664
No 44
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.90 E-value=0.061 Score=56.87 Aligned_cols=153 Identities=17% Similarity=0.362 Sum_probs=91.3
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-----c--------E
Q 017111 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-----g--------l 148 (377)
+.+|.| |+++||++ +..|++|+--.|++ .+.|.|. +|+||+|.|.+-+|. +. + +
T Consensus 202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv 279 (509)
T PLN02488 202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV 279 (509)
T ss_pred CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence 334554 68889865 22355555557888 4667774 689999998655543 21 1 2
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeeeCCceEEEe
Q 017111 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS 210 (377)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~vTIS 210 (377)
.+ .++++|.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|- .+|+.-+...+-++
T Consensus 280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq 358 (509)
T PLN02488 280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ 358 (509)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence 33 478999999999976432 235555554578899999999765444 44444444456677
Q ss_pred CceecCC-----CceeEecCCCCCCCCcceeEEEecceecCCCC
Q 017111 211 RCHFSSH-----DKTMLIGADPSHVADRCIRVTIHHCFFDGTRQ 249 (377)
Q Consensus 211 ~n~f~~h-----~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~ 249 (377)
+|.|... .++.+--.+-.. .+...-+.||+|.+.....
T Consensus 359 ~C~I~sr~~~~~~~~~ITAq~R~~-~~~~tGfvf~~C~it~~~~ 401 (509)
T PLN02488 359 FCQIVARQPMMGQSNVITAQSRES-KDDNSGFSIQKCNITASSD 401 (509)
T ss_pred ccEEEEecCCCCCCEEEEeCCCCC-CCCCcEEEEEeeEEecCCc
Confidence 7877532 122222111100 0111347788887765443
No 45
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.86 E-value=0.067 Score=57.77 Aligned_cols=119 Identities=21% Similarity=0.401 Sum_probs=75.8
Q ss_pred CCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-----c--------EE
Q 017111 94 DDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------LR 149 (377)
Q Consensus 94 dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-----g--------l~ 149 (377)
.+|.| ++++||++ ...|++|+--.|++ .+.|.|. +|+||+|.|.+-+|. +. + |.
T Consensus 291 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~ 368 (596)
T PLN02745 291 KDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFV 368 (596)
T ss_pred CCCCCCcccHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEE
Confidence 34544 78889875 22355555456988 4667774 589999998654443 21 1 33
Q ss_pred EeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeeeCCceEEEeC
Q 017111 150 LKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDITVSR 211 (377)
Q Consensus 150 i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~vTIS~ 211 (377)
+ .+++++.|||+|+...+. ..-|+-++-.++.+.+.+|.|.-..|-| +|+.-+....-+++
T Consensus 369 v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~~ 447 (596)
T PLN02745 369 A-LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAIFQN 447 (596)
T ss_pred E-EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecceeEEEEe
Confidence 3 489999999999976432 2234444335788999999997655544 44444444555666
Q ss_pred ceec
Q 017111 212 CHFS 215 (377)
Q Consensus 212 n~f~ 215 (377)
|.|.
T Consensus 448 C~i~ 451 (596)
T PLN02745 448 CLIF 451 (596)
T ss_pred cEEE
Confidence 6664
No 46
>PLN02665 pectinesterase family protein
Probab=96.84 E-value=0.076 Score=54.12 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=71.2
Q ss_pred hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceE-EeCC------------cEEEeeeccEE
Q 017111 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK------------GLRLKECEHVI 157 (377)
Q Consensus 98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~-I~G~------------gl~i~~a~NVI 157 (377)
-|+++||++ ...|+||+--.|+. .+.|.|. +++||.|.+...+ |... .+.+ .+++++
T Consensus 81 ~TIq~AIdaiP~~~~~r~vI~Ik~GvY--~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~ 157 (366)
T PLN02665 81 KTITDAIKSIPAGNTQRVIIDIGPGEY--NEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFM 157 (366)
T ss_pred cCHHHHHhhCcccCCceEEEEEeCcEE--EEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeE
Confidence 378899975 22355555556988 4677774 6889999865333 3211 1344 489999
Q ss_pred EeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 158 ICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 158 IRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
.+||+|+...+ ...-|+.++-.++.+-+.+|.|.-..|=|++-. ..--..+|.|.
T Consensus 158 a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~---gr~yf~~CyIe 218 (366)
T PLN02665 158 AANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK---GRHFFKDCYIE 218 (366)
T ss_pred EEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC---CCEEEEeeEEe
Confidence 99999997532 112344443347889999999988777776532 22334455554
No 47
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.81 E-value=0.078 Score=56.65 Aligned_cols=144 Identities=14% Similarity=0.341 Sum_probs=87.0
Q ss_pred hHHHhhhcC---C----CeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-------C------cEEEeeec
Q 017111 99 SLREGCRMK---E----PLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K------GLRLKECE 154 (377)
Q Consensus 99 SLr~Ai~~~---~----Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-------~------gl~i~~a~ 154 (377)
++++||++- . -|+||+--.|++ .+.|.|. .|+||+|.|.+-+|. + . .+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 688888641 1 155666567988 4677773 689999998654443 2 1 1344 479
Q ss_pred cEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeeeCCceEEEeCceecC
Q 017111 155 HVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVSRCHFSS 216 (377)
Q Consensus 155 NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~vTIS~n~f~~ 216 (377)
++|.|||+|+...+. ..-|+-++-.++...+.+|+|.-..|- .+|+.-+.-.+-+++|.|.-
T Consensus 314 ~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~~ 393 (538)
T PLN03043 314 RFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLYA 393 (538)
T ss_pred CEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeeeeccEEEE
Confidence 999999999976432 234555544578899999999765444 44444445556778887753
Q ss_pred C-----CceeEecCCCCCCCCcceeEEEecceecC
Q 017111 217 H-----DKTMLIGADPSHVADRCIRVTIHHCFFDG 246 (377)
Q Consensus 217 h-----~k~~LiG~~d~~~~d~~~~VT~hhNlf~~ 246 (377)
. .++++--.+... .+...-+.||+|.+..
T Consensus 394 r~~~~~~~~~iTA~~r~~-~~~~tG~~~~~c~i~~ 427 (538)
T PLN03043 394 RKPMANQKNAFTAQGRTD-PNQNTGISIINCTIEA 427 (538)
T ss_pred ecCCCCCCceEEecCCCC-CCCCceEEEEecEEec
Confidence 2 122222111100 0112357788887754
No 48
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.78 E-value=0.025 Score=55.98 Aligned_cols=111 Identities=16% Similarity=0.333 Sum_probs=65.6
Q ss_pred hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceE-EeCC-------------cEEEeeeccE
Q 017111 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK-------------GLRLKECEHV 156 (377)
Q Consensus 98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~-I~G~-------------gl~i~~a~NV 156 (377)
-++++||+. ...+++|+--.|+.+ +.|.|. +++||+|.|..-+ |.+. .|.+. ++++
T Consensus 13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f 89 (298)
T PF01095_consen 13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDF 89 (298)
T ss_dssp SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-ccce
Confidence 358888875 223555665679884 667775 5899999975433 3331 14554 8999
Q ss_pred EEeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecC
Q 017111 157 IICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS 216 (377)
Q Consensus 157 IIRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~ 216 (377)
+++||+|+...+ ...-||.+. ++++.+.+|.|.-..|-|+.- ....-+.+|.|..
T Consensus 90 ~~~nit~~Nt~g~~~~qAvAl~~~--~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG 147 (298)
T PF01095_consen 90 TAENITFENTAGPSGGQAVALRVS--GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG 147 (298)
T ss_dssp EEEEEEEEEHCSGSG----SEEET---TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE
T ss_pred eeeeeEEecCCCCcccceeeeeec--CCcEEEEEeEEccccceeeec---cceeEEEeeEEEe
Confidence 999999997432 123566664 678999999999888876643 3355667777763
No 49
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.77 E-value=0.075 Score=57.08 Aligned_cols=120 Identities=17% Similarity=0.423 Sum_probs=76.7
Q ss_pred CCCCCh---hHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-------C-----
Q 017111 93 ADDGPG---SLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K----- 146 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~~-------~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-------~----- 146 (377)
+.+|.| ++++||++- ..|+||+--.|++ .+.|.|. +|+||+|.|.+-+|. + .
T Consensus 255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 332 (566)
T PLN02713 255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS 332 (566)
T ss_pred CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence 445555 678888652 1245555456988 4667773 688999998544433 2 1
Q ss_pred -cEEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeeeCCceE
Q 017111 147 -GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDI 207 (377)
Q Consensus 147 -gl~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~v 207 (377)
.+.+ .+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|-| +|+.-+.-.+
T Consensus 333 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 411 (566)
T PLN02713 333 ATFAV-VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV 411 (566)
T ss_pred eeEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence 1344 479999999999986432 2345544445788999999997654444 4444444556
Q ss_pred EEeCceec
Q 017111 208 TVSRCHFS 215 (377)
Q Consensus 208 TIS~n~f~ 215 (377)
-+++|.|.
T Consensus 412 vfq~C~i~ 419 (566)
T PLN02713 412 VFQNCNLY 419 (566)
T ss_pred EEeccEEE
Confidence 67777775
No 50
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.76 E-value=0.012 Score=62.79 Aligned_cols=103 Identities=18% Similarity=0.337 Sum_probs=68.5
Q ss_pred CCCCCh---hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C------Cc-------
Q 017111 93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------KG------- 147 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~~-----~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G------~g------- 147 (377)
+.+|.| ++++||++- ..|.||+--.|+++ +.|.|. .|+||+|.|.+-+|. + .|
T Consensus 246 a~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~sa 323 (553)
T PLN02708 246 CKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTA 323 (553)
T ss_pred CCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceE
Confidence 334544 678888641 23556665679884 667763 689999998655443 1 12
Q ss_pred -EEEeeeccEEEeeeEEeCCCCCC-CCceEecCCCceEEEEceeeecCCCCce
Q 017111 148 -LRLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (377)
Q Consensus 148 -l~i~~a~NVIIRnL~ir~g~~~~-~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (377)
+.+ .+++++.|||+|+...+.+ .-|+-++-.++.+.+.+|.|.-..|-|+
T Consensus 324 T~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy 375 (553)
T PLN02708 324 TVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLY 375 (553)
T ss_pred EEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccce
Confidence 334 4899999999999865422 3455554458899999999976555443
No 51
>PLN02304 probable pectinesterase
Probab=96.76 E-value=0.021 Score=58.37 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=74.7
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEe---ccCcceeecccceEEeC--------------CcEEEeeeccEE
Q 017111 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLTG--------------KGLRLKECEHVI 157 (377)
Q Consensus 99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~g~~I~G--------------~gl~i~~a~NVI 157 (377)
|+++||++ +..+++|+--.|+. .+.|.| .+|+||+|+|.+-++.- ..+.+ .+++++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~GvY--~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGIY--YEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeEe--EEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 78899975 22355555567887 467777 37899999975544321 11333 389999
Q ss_pred EeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 158 ICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 158 IRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
.+||+|+.... ...-|+.+.-.++.+-+.+|.|.-..|-|++- ...--+.+|.|.
T Consensus 166 a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIe 226 (379)
T PLN02304 166 AKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQ 226 (379)
T ss_pred EEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEc
Confidence 99999997532 11234444435788999999999998888753 234446677776
No 52
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.74 E-value=0.1 Score=56.34 Aligned_cols=148 Identities=18% Similarity=0.390 Sum_probs=89.4
Q ss_pred CCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-------------cEEE
Q 017111 95 DGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------GLRL 150 (377)
Q Consensus 95 sg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-------------gl~i 150 (377)
+|.| ++++||+. ...|.||+--.|++ .+.+.|. .|++|+|.|.+-+|. +. .+.+
T Consensus 282 dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY--~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v 359 (587)
T PLN02313 282 DGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVY--RENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA 359 (587)
T ss_pred CCCCCCccHHHHHHhccccCCceEEEEEeCcee--EEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE
Confidence 4544 67888865 22355565567887 4667774 589999998654443 21 1233
Q ss_pred eeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeeeCCceEEEeCc
Q 017111 151 KECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRC 212 (377)
Q Consensus 151 ~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dglidi~~~s~~vTIS~n 212 (377)
.+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-.. .|.+|+.-+...+-+++|
T Consensus 360 -~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~c 438 (587)
T PLN02313 360 -VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDC 438 (587)
T ss_pred -ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEcc
Confidence 478999999999986432 2234444335788999999997543 445555555566778888
Q ss_pred eecCC-----CceeEecCCCCCCCCcceeEEEecceecC
Q 017111 213 HFSSH-----DKTMLIGADPSHVADRCIRVTIHHCFFDG 246 (377)
Q Consensus 213 ~f~~h-----~k~~LiG~~d~~~~d~~~~VT~hhNlf~~ 246 (377)
.|.-. .++++--.+... .+...-+.||+|.+..
T Consensus 439 ~i~~r~~~~~~~~~iTAqgr~~-~~~~tG~v~~~c~i~~ 476 (587)
T PLN02313 439 DINARRPNSGQKNMVTAQGRSD-PNQNTGIVIQNCRIGG 476 (587)
T ss_pred EEEEecCCCCCcceEEecCCCC-CCCCceEEEEecEEec
Confidence 88632 122222111100 0112357888887754
No 53
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.68 E-value=0.023 Score=60.55 Aligned_cols=117 Identities=21% Similarity=0.417 Sum_probs=76.3
Q ss_pred CCCCCh---hHHHhhhcC------CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-----Cc-------
Q 017111 93 ADDGPG---SLREGCRMK------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG------- 147 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~~------~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-----~g------- 147 (377)
+.+|.| ++++||++- ..|++|+--.|++ .+.|.|. +|+||+|.|.+-+|. + .+
T Consensus 228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa 305 (539)
T PLN02995 228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIY--QENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA 305 (539)
T ss_pred CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEe--EEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence 445665 788999752 2255555456988 4567774 699999998654443 2 11
Q ss_pred -EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 148 -LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 148 -l~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
+.+ .+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|-|.+-. ..--..+|.|.
T Consensus 306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~---~Rqyy~~C~I~ 371 (539)
T PLN02995 306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS---QRQFYRECYIY 371 (539)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC---CceEEEeeEEe
Confidence 334 489999999999976432 23455554457899999999988877766432 23344555554
No 54
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.68 E-value=0.07 Score=56.95 Aligned_cols=115 Identities=20% Similarity=0.417 Sum_probs=73.8
Q ss_pred hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEE-eCC-----c--------EEEeeeccE
Q 017111 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------LRLKECEHV 156 (377)
Q Consensus 98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I-~G~-----g--------l~i~~a~NV 156 (377)
-++++||++ +..|+|||--.|++ .+.|.|. +|+||+|.|.+-++ .+. + +.+ .++++
T Consensus 245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F 321 (537)
T PLN02506 245 RTITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF 321 (537)
T ss_pred cCHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence 357888865 23456666567988 4567774 68999999754444 321 1 233 48999
Q ss_pred EEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeeeCCceEEEeCceec
Q 017111 157 IICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDITVSRCHFS 215 (377)
Q Consensus 157 IIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~vTIS~n~f~ 215 (377)
+.|||+|+...+. ..-|+-++-.++++-+.+|.|.-..|-| +|+.-+....-+++|.|.
T Consensus 322 ~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 398 (537)
T PLN02506 322 IARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIY 398 (537)
T ss_pred EEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccCceeEEeccEEE
Confidence 9999999976432 2334444335789999999997655544 444444444566666665
No 55
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.64 E-value=0.031 Score=59.56 Aligned_cols=101 Identities=22% Similarity=0.465 Sum_probs=70.4
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeC-----------CceEEEeCceec
Q 017111 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE-----------STDITVSRCHFS 215 (377)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~-----------s~~vTIS~n~f~ 215 (377)
++.+..++|+.++||+|..-.....|||.+. .++||.|+.|.|+-+.| +|-++.+ +.+|+|++|+|.
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD-~I~iksg~~~~~~~~~~~~~~i~i~~c~~~ 340 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDD-CIAIKSGAGLDGKKGYGPSRNIVIRNCYFS 340 (542)
T ss_pred EEeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCc-eEEeecccCCcccccccccccEEEecceec
Confidence 4566689999999999987554467999996 89999999999987443 3655532 467999999998
Q ss_pred CCCceeEecCCCCCCCCcc-eeEEEecceecCCCCCCCcc
Q 017111 216 SHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRV 254 (377)
Q Consensus 216 ~h~k~~LiG~~d~~~~d~~-~~VT~hhNlf~~~~~R~Pr~ 254 (377)
.-.-+..+|+.- +++ ..|++-.|-|.+ ..|-=|+
T Consensus 341 ~ghG~~v~Gse~----~ggv~ni~ved~~~~~-~d~GLRi 375 (542)
T COG5434 341 SGHGGLVLGSEM----GGGVQNITVEDCVMDN-TDRGLRI 375 (542)
T ss_pred ccccceEeeeec----CCceeEEEEEeeeecc-Ccceeee
Confidence 433333444321 122 367777777776 4554555
No 56
>PLN02682 pectinesterase family protein
Probab=96.64 E-value=0.027 Score=57.35 Aligned_cols=112 Identities=15% Similarity=0.255 Sum_probs=72.8
Q ss_pred hhHHHhhhc----CCCeEEEEEeceEEEecceeEe---ccCcceeecccceEEe------------CC--------cEEE
Q 017111 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT------------GK--------GLRL 150 (377)
Q Consensus 98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~g~~I~------------G~--------gl~i 150 (377)
-|+++||++ +..+++|+--.|+. .+.|.| .+|+||.|.|..-++. |. .+.+
T Consensus 83 ~TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v 160 (369)
T PLN02682 83 TTIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV 160 (369)
T ss_pred cCHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE
Confidence 368889875 22344444456888 466777 4789999997544332 10 1344
Q ss_pred eeeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 151 KECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 151 ~~a~NVIIRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
.+++++.+||+|+.... ...-|+.+.-.++++.+.+|.|.-..|=|++- ...--+.+|.|.
T Consensus 161 -~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 227 (369)
T PLN02682 161 -NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCYIE 227 (369)
T ss_pred -ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeEEc
Confidence 48899999999997532 11224444335789999999999888887653 234455666665
No 57
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.61 E-value=0.023 Score=60.99 Aligned_cols=104 Identities=21% Similarity=0.408 Sum_probs=68.4
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C------C--c------
Q 017111 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------K--G------ 147 (377)
Q Consensus 93 ~dsg~G---SLr~Ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G------~--g------ 147 (377)
+.+|.| ++++||++- ..|+||+--.|++ .+.|.|. +|+||+|.|.+-+|. + + +
T Consensus 264 a~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT 341 (572)
T PLN02990 264 AQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTAT 341 (572)
T ss_pred CCCCCCCCcCHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeE
Confidence 344555 788898752 2355555557888 4667774 689999998544433 1 1 1
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017111 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglid 199 (377)
+.+ .+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|-|++
T Consensus 342 ~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 393 (572)
T PLN02990 342 VAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYV 393 (572)
T ss_pred EEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhcc
Confidence 233 489999999999976432 234554443578899999999876665543
No 58
>PLN02314 pectinesterase
Probab=96.53 E-value=0.019 Score=61.85 Aligned_cols=98 Identities=17% Similarity=0.328 Sum_probs=66.5
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEE-eCC-----c--------EEEeeeccEE
Q 017111 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------LRLKECEHVI 157 (377)
Q Consensus 99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I-~G~-----g--------l~i~~a~NVI 157 (377)
++++||+. ...|+||+--.|++ .+.|.|. .|+||+|.|.+-+| .+. | |.+ .+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence 68889865 23456666567988 4667774 58999999854444 321 1 333 489999
Q ss_pred EeeeEEeCCCCCC-CCceEecCCCceEEEEceeeecCCCCceE
Q 017111 158 ICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (377)
Q Consensus 158 IRnL~ir~g~~~~-~DaI~i~~~s~nVwIDHcs~s~~~Dglid 199 (377)
.|||+|+...+.. .-|+-++-.++...+.+|.|.-..|-|.+
T Consensus 369 a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~ 411 (586)
T PLN02314 369 AKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA 411 (586)
T ss_pred EEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhee
Confidence 9999999764322 34555544578899999999876666543
No 59
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.38 E-value=0.029 Score=60.19 Aligned_cols=102 Identities=19% Similarity=0.347 Sum_probs=67.1
Q ss_pred CCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe--------CC------cEEE
Q 017111 95 DGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------GLRL 150 (377)
Q Consensus 95 sg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~--------G~------gl~i 150 (377)
+|.| +.++||+. ...|.||+--.|++ .+.|.|. .|+||+|.|.+-+|. |. .+.+
T Consensus 265 dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v 342 (565)
T PLN02468 265 DGSGKYKTISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV 342 (565)
T ss_pred CCCCCccCHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE
Confidence 4555 67788865 23355565567988 4667774 588999998644443 11 1333
Q ss_pred eeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017111 151 KECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (377)
Q Consensus 151 ~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglid 199 (377)
.+++++.|||+|+...+. ..-|+-++-.++.+.+.+|.|.-..|-|+.
T Consensus 343 -~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 391 (565)
T PLN02468 343 -FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYA 391 (565)
T ss_pred -ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhcc
Confidence 378999999999976432 224444443578899999999876666543
No 60
>PLN02634 probable pectinesterase
Probab=96.26 E-value=0.072 Score=54.12 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=71.4
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe------------C--------CcEEEe
Q 017111 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT------------G--------KGLRLK 151 (377)
Q Consensus 99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~------------G--------~gl~i~ 151 (377)
|+++||++ ...+++|+--.|+. .+.|.|. +|+||.|.|...+|. | ..+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 47888865 22344444456887 4667773 689999998655553 1 01334
Q ss_pred eeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 152 ~a~NVIIRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
.+++++.+||+|+.... ...-|+.+.-.++++-+.+|.|.-..|-|++- ...--..+|.|.
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~CyIe 213 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECYIE 213 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeEEc
Confidence 47899999999997632 11234444334788999999999888877643 234445566665
No 61
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.17 E-value=0.046 Score=58.93 Aligned_cols=100 Identities=20% Similarity=0.343 Sum_probs=66.0
Q ss_pred hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-----c--------EEEeeeccE
Q 017111 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------LRLKECEHV 156 (377)
Q Consensus 98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-----g--------l~i~~a~NV 156 (377)
-++++||++ ...|+||+--.|+++-+ .|.|. +|+||+|.|.+-+|. +. + +.+ .++++
T Consensus 285 ~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F 362 (587)
T PLN02484 285 KTISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGF 362 (587)
T ss_pred ccHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCE
Confidence 357789865 23356666567988431 47774 689999998654443 31 1 233 48999
Q ss_pred EEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017111 157 IICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (377)
Q Consensus 157 IIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglid 199 (377)
+.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|-|++
T Consensus 363 ~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~ 406 (587)
T PLN02484 363 IARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYV 406 (587)
T ss_pred EEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCccccc
Confidence 9999999976432 224444443578899999999876666554
No 62
>PLN02916 pectinesterase family protein
Probab=96.07 E-value=0.061 Score=56.86 Aligned_cols=100 Identities=16% Similarity=0.296 Sum_probs=66.6
Q ss_pred hhHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-------C------cEEEeee
Q 017111 98 GSLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K------GLRLKEC 153 (377)
Q Consensus 98 GSLr~Ai~~~-------~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-------~------gl~i~~a 153 (377)
-++++||++- ..|++|+--.|++ .+.+.|. +|+||+|.|.+-+|. + . .+.+ .+
T Consensus 200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~ 276 (502)
T PLN02916 200 RTINQALAALSRMGKSRTNRVIIYVKAGVY--NEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SG 276 (502)
T ss_pred cCHHHHHHhcccccCCCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-EC
Confidence 3688888642 2356665567988 4667774 589999997554443 2 1 1333 48
Q ss_pred ccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceEe
Q 017111 154 EHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDI 200 (377)
Q Consensus 154 ~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi 200 (377)
++++.|||+|+...+. ..-|+-++-.++..-+.+|.|.-..|-|++-
T Consensus 277 ~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~ 324 (502)
T PLN02916 277 DGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH 324 (502)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeC
Confidence 8999999999976432 2234444335788999999998777766543
No 63
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.83 E-value=0.03 Score=51.00 Aligned_cols=102 Identities=24% Similarity=0.389 Sum_probs=56.8
Q ss_pred CcceeecccceEEe--CCcEEEeeeccEEEeeeEEeCCCCCCCCceEe-------------------cCCCceEEEEcee
Q 017111 131 YKTIDGRGQRVKLT--GKGLRLKECEHVIICNLEFEGGKGPDVDAIQI-------------------KPKSKHIWIDRCS 189 (377)
Q Consensus 131 n~TI~G~G~g~~I~--G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i-------------------~~~s~nVwIDHcs 189 (377)
|++|.|.+.. .. ..++.+..+.|+.|+|++++... .++|.+ +.++.+++++.|.
T Consensus 98 nl~i~~~~~~--~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 98 NLTIDGNGID--PNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEETCGC--E-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred eeEEEccccc--CCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence 5777776322 22 34677777899999999999752 223322 2111223334444
Q ss_pred eecCCCCceEeeeCCceEEEeCceecC-CCceeEecCCCCCCCCcceeEEEecceecCCC
Q 017111 190 LRDYDDGLIDITRESTDITVSRCHFSS-HDKTMLIGADPSHVADRCIRVTIHHCFFDGTR 248 (377)
Q Consensus 190 ~s~~~Dglidi~~~s~~vTIS~n~f~~-h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~ 248 (377)
+..+.++ +. .+.+++++++|.|.. ...+..+-... .+++.+|.|.+|.
T Consensus 173 ~~~~~~g-~~--~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 173 FNGGDNG-II--LGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD 221 (225)
T ss_dssp EESSSCS-EE--CEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred ccCCCce-eE--eecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence 5555666 32 233678888888775 44454443221 3666666766654
No 64
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=95.68 E-value=0.27 Score=51.02 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=70.9
Q ss_pred ceEEecCCCCCC---ChhHHHhhhcC-----CCeEEEEEeceEEEecceeEe---ccCcceeeccc---ceEEeCC----
Q 017111 85 PLYHVTTLADDG---PGSLREGCRMK-----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQ---RVKLTGK---- 146 (377)
Q Consensus 85 ~vv~VT~l~dsg---~GSLr~Ai~~~-----~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~---g~~I~G~---- 146 (377)
..+.|-- +.+| --|+++||++. ..+++|+--.|+. .+.|.| .+++||.|.|. +..|...
T Consensus 80 ~~~vV~~-a~dGsGdf~TIQaAIdAa~~~~~~~r~~I~Ik~GvY--~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~ 156 (422)
T PRK10531 80 PDFVVGP-AGTQGVTHTTVQAAVDAAIAKRTNKRQYIAVMPGTY--QGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGE 156 (422)
T ss_pred CcEEEec-CCCCCCCccCHHHHHhhccccCCCceEEEEEeCcee--EEEEEeCCCCceEEEEecCCCCCceEEEecCccc
Confidence 4555642 2223 34788899741 2345555456888 466777 37899999763 3344321
Q ss_pred -------------------------------------c------EEEeeeccEEEeeeEEeCCCCC-----CCCceEecC
Q 017111 147 -------------------------------------G------LRLKECEHVIICNLEFEGGKGP-----DVDAIQIKP 178 (377)
Q Consensus 147 -------------------------------------g------l~i~~a~NVIIRnL~ir~g~~~-----~~DaI~i~~ 178 (377)
+ +.+ .+++++.+||+|+...+. ..-|+-+.-
T Consensus 157 ~~~~~~~~~~~~~g~~~~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv 235 (422)
T PRK10531 157 MSPADWRANVNPRGKYMPGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRT 235 (422)
T ss_pred cccccccccccccccccccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE
Confidence 0 223 479999999999976431 123444433
Q ss_pred CCceEEEEceeeecCCCCceE
Q 017111 179 KSKHIWIDRCSLRDYDDGLID 199 (377)
Q Consensus 179 ~s~nVwIDHcs~s~~~Dglid 199 (377)
.++.+.+.+|.|.-..|=|+.
T Consensus 236 ~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 236 DGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred cCCcEEEEeeEEecccceeee
Confidence 578899999999988888775
No 65
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.68 E-value=0.059 Score=50.23 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=76.5
Q ss_pred Ccceeec---------ccceEEeCCcEEEeeeccEEEeeeEEeCCCC----C-CCCceEecCCCceEEEEceeeecCCCC
Q 017111 131 YKTIDGR---------GQRVKLTGKGLRLKECEHVIICNLEFEGGKG----P-DVDAIQIKPKSKHIWIDRCSLRDYDDG 196 (377)
Q Consensus 131 n~TI~G~---------G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~~----~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg 196 (377)
|++|-+. +....-.+..|.|.+++||+|-|.+|..+.. . .+..|.+..++++|-|-+|-|......
T Consensus 52 Nl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~ 131 (200)
T PF00544_consen 52 NLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT 131 (200)
T ss_dssp S-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET
T ss_pred CCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc
Confidence 6777762 2233334567999999999999999998721 1 233456655789999999999764332
Q ss_pred ceEe------eeCCceEEEeCceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceE
Q 017111 197 LIDI------TRESTDITVSRCHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYT 266 (377)
Q Consensus 197 lidi------~~~s~~vTIS~n~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~ 266 (377)
++.- ......||+-.|+|.+.. +.=++. .-.+-+.+|+|.+.....=.++. +++-+.||||
T Consensus 132 ~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r---------~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 132 MLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVR---------FGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp CEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEEC---------SCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred cccCCCCCccccCCceEEEEeEEECchhhCCCccc---------ccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 2211 112358999999997431 111221 12678899999877777655554 4689999987
No 66
>PLN02671 pectinesterase
Probab=95.51 E-value=0.23 Score=50.61 Aligned_cols=111 Identities=13% Similarity=0.238 Sum_probs=71.1
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeccc---ceEEeC-----------C--------cEE
Q 017111 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQ---RVKLTG-----------K--------GLR 149 (377)
Q Consensus 99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~---g~~I~G-----------~--------gl~ 149 (377)
|+++||++ ...+++|+--.|+. .+.|.|. +++||+|.|. ...|.. . .+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 68888865 22244455457887 5677773 6899999863 334441 0 133
Q ss_pred EeeeccEEEeeeEEeCCCC-----CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 150 LKECEHVIICNLEFEGGKG-----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 150 i~~a~NVIIRnL~ir~g~~-----~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
+ .+++++.+||+|+.... ...-|+.+.-.++++-+.+|.|.-..|-|++- ...--+.+|.|.
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~CyIe 217 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQCYIQ 217 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEecEEE
Confidence 3 47899999999997621 11233433334788999999999888888754 223445666665
No 67
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.04 E-value=0.52 Score=46.91 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=86.3
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCC-----CCceEeeeCCceEEEeCceecCCCceeE
Q 017111 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYD-----DGLIDITRESTDITVSRCHFSSHDKTML 222 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~-----Dglidi~~~s~~vTIS~n~f~~h~k~~L 222 (377)
+.|+.++|+-|-.+--.. .--+-++.|. .+.||+|...+|.... +..|.+..++.+|=|-.|.|..+....-
T Consensus 95 ~~iki~sNkTivG~g~~a--~~~g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~ 171 (345)
T COG3866 95 ITIKIGSNKTIVGSGADA--TLVGGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNAS 171 (345)
T ss_pred EEEeeccccEEEeecccc--EEEeceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccc
Confidence 566656666554332110 0114578886 6899999999998765 3448887788999999999987655321
Q ss_pred ecCCCCCC--CCcceeEEEecceecCCCC---------CCCccccC--eeEEEcceEEcCccceeeecCCceEEEEceeE
Q 017111 223 IGADPSHV--ADRCIRVTIHHCFFDGTRQ---------RHPRVRYA--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY 289 (377)
Q Consensus 223 iG~~d~~~--~d~~~~VT~hhNlf~~~~~---------R~Pr~r~G--~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F 289 (377)
--+.|..+ ....-.||+..|.|++..- -++- .| .+.+-+|||.|.-...=..|-+ ++.+-+|||
T Consensus 172 ~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~--~~~~kvT~hhNyFkn~~qR~PriRfG-~vHvyNNYy 248 (345)
T COG3866 172 GSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYD--DGKYKVTIHHNYFKNLYQRGPRIRFG-MVHVYNNYY 248 (345)
T ss_pred ccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccccc--CCceeEEEeccccccccccCCceEee-EEEEecccc
Confidence 11112111 1112479999999976432 2222 12 3678899999865443333332 566779999
Q ss_pred ecCC
Q 017111 290 EAGQ 293 (377)
Q Consensus 290 ~~g~ 293 (377)
+.-+
T Consensus 249 ~~~~ 252 (345)
T COG3866 249 EGNP 252 (345)
T ss_pred ccCc
Confidence 9443
No 68
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=93.82 E-value=0.25 Score=52.74 Aligned_cols=135 Identities=20% Similarity=0.319 Sum_probs=85.7
Q ss_pred CCCeEEEEEeceEEEecc------e---eE-e-ccCcceeecccceEEeC----CcEEEeeeccEEEeeeEEeCCCCCCC
Q 017111 107 KEPLWIVFEVSGTIHLRS------H---LS-V-SSYKTIDGRGQRVKLTG----KGLRLKECEHVIICNLEFEGGKGPDV 171 (377)
Q Consensus 107 ~~Pr~IVf~vsG~I~l~~------~---l~-V-~sn~TI~G~G~g~~I~G----~gl~i~~a~NVIIRnL~ir~g~~~~~ 171 (377)
..|+.+.|.--..+.+.. + +. + .+|+||.+. .+...+ .||.+..++||.|.+.+|..+ +
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl--~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg----D 309 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL--TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG----D 309 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce--EEECCCCCCCCccccccceeEEEeccEEecC----C
Confidence 467777765433333321 1 11 1 256677654 222223 388998999999999999975 4
Q ss_pred CceEecC-----------CCceEEEEceeeecCCCCceEee---eCCceEEEeCceecCCCceeEecCCCCCCCCcceeE
Q 017111 172 DAIQIKP-----------KSKHIWIDRCSLRDYDDGLIDIT---RESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRV 237 (377)
Q Consensus 172 DaI~i~~-----------~s~nVwIDHcs~s~~~Dglidi~---~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~V 237 (377)
|+|.+.. -+++|||-||-|+.++-+++.-. .+-.+|++.+|.|.+.+.+.-|....... ....+|
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~nI 388 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVRNI 388 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEEEE
Confidence 6665541 24789999999998777755432 23579999999999877766665432211 112377
Q ss_pred EEecceecCCC
Q 017111 238 TIHHCFFDGTR 248 (377)
Q Consensus 238 T~hhNlf~~~~ 248 (377)
+|+.+...+..
T Consensus 389 ~~~~~~~~nv~ 399 (542)
T COG5434 389 VFEDNKMRNVK 399 (542)
T ss_pred EEecccccCcc
Confidence 77777666553
No 69
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.79 E-value=0.57 Score=48.65 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=17.6
Q ss_pred eEEEecceecCCCCC--CCcccc-Cee-EEEcceEEcCc
Q 017111 236 RVTIHHCFFDGTRQR--HPRVRY-AKV-HLYNNYTRNWG 270 (377)
Q Consensus 236 ~VT~hhNlf~~~~~R--~Pr~r~-G~~-hv~NN~~~n~~ 270 (377)
+-++..|+|-.+..+ ..-+|. |.- .|+|||+++..
T Consensus 246 ~n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~ 284 (425)
T PF14592_consen 246 RNTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLT 284 (425)
T ss_dssp S-EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESS
T ss_pred CceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccc
Confidence 446667777665543 455653 444 47888888653
No 70
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=89.08 E-value=2.3 Score=43.18 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=68.8
Q ss_pred eeEeccCcceeecccceEEeCC--cEEEeeeccEEEeeeEEeCCCC----CCCCceEecCCCceEEEEceeeecCCCCce
Q 017111 125 HLSVSSYKTIDGRGQRVKLTGK--GLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (377)
Q Consensus 125 ~l~V~sn~TI~G~G~g~~I~G~--gl~i~~a~NVIIRnL~ir~g~~----~~~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (377)
.|.|....|-++. ....|.|. ||.+.++..+.|+.-+|.+-.. ..++||.+. ++..+-|--++++...|+..
T Consensus 99 gI~v~~~at~A~V-r~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy 176 (408)
T COG3420 99 GIFVGRTATGAVV-RHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY 176 (408)
T ss_pred eEEeccCcccceE-EcccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence 4666666666665 22345554 5777889999999999987542 348999998 88999999999999999954
Q ss_pred EeeeCCceEEEeCceecCCCce
Q 017111 199 DITRESTDITVSRCHFSSHDKT 220 (377)
Q Consensus 199 di~~~s~~vTIS~n~f~~h~k~ 220 (377)
+ .-+..-+++.|.|++-.++
T Consensus 177 -~-~~S~~~~~~gnr~~~~Ryg 196 (408)
T COG3420 177 -S-DTSQHNVFKGNRFRDLRYG 196 (408)
T ss_pred -E-cccccceecccchhheeee
Confidence 3 3477888899988875443
No 71
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=87.71 E-value=3.6 Score=38.34 Aligned_cols=88 Identities=22% Similarity=0.175 Sum_probs=54.5
Q ss_pred ceEEEeCceecCCCc--eeEecCCCCCCCCcceeEEEecceecCCCCCCCcc--ccC-------eeEEEcceEEcCccce
Q 017111 205 TDITVSRCHFSSHDK--TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV--RYA-------KVHLYNNYTRNWGIYA 273 (377)
Q Consensus 205 ~~vTIS~n~f~~h~k--~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~--r~G-------~~hv~NN~~~n~~~~a 273 (377)
++|-|=+|.|.+-.- ..|+|...+...+....|.+|||.|-.+.. +|.+ ..| ..-+.||+|+..-..|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGt-n~~~~wvGGIv~sGF~ntlIENNVfDG~y~aa 80 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGT-NPNIDWVGGIVTSGFYNTLIENNVFDGVYHAA 80 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCc-CCCCceeeeEEeccccccEEEeeeecccccce
Confidence 578888888886443 346777655555555689999999977543 4444 333 3478999998654333
Q ss_pred ee----------ecCCceEEEEceeEecCC
Q 017111 274 VC----------ASVDSQIYSQCNIYEAGQ 293 (377)
Q Consensus 274 i~----------~~~~a~v~~e~N~F~~g~ 293 (377)
+. .+.+-...+.+|.+.+..
T Consensus 81 i~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 81 IAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred EEEEecccccCCCCCceEEEEEcceEeeee
Confidence 31 112334555677776654
No 72
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=87.52 E-value=7.3 Score=39.45 Aligned_cols=147 Identities=11% Similarity=0.129 Sum_probs=89.8
Q ss_pred ChhHHHhhhc-----CCCeEEEEEeceEEEecceeEec-cC--cceeecccc--eEEe-----C---C--cEE-------
Q 017111 97 PGSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSVS-SY--KTIDGRGQR--VKLT-----G---K--GLR------- 149 (377)
Q Consensus 97 ~GSLr~Ai~~-----~~Pr~IVf~vsG~I~l~~~l~V~-sn--~TI~G~G~g--~~I~-----G---~--gl~------- 149 (377)
--|.++||++ ...|.+++-..|.+ ++.|.|. ++ +|+.|.+.. -+.+ + . +..
T Consensus 94 f~TIQaAvdaA~~~~~~kr~yI~vk~GvY--~e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss 171 (405)
T COG4677 94 FTTIQAAVDAAIIKRTNKRQYIAVKAGVY--QETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSS 171 (405)
T ss_pred hHHHHHHHhhhcccCCCceEEEEEcccee--ceeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccc
Confidence 3467888765 23466666667887 5667775 45 899998643 2222 1 1 111
Q ss_pred -------------EeeeccEEEeeeEEeCCCC--CC---CCceEecCCCceEEEEceeeecCCCCceEeeeCCc------
Q 017111 150 -------------LKECEHVIICNLEFEGGKG--PD---VDAIQIKPKSKHIWIDRCSLRDYDDGLIDITREST------ 205 (377)
Q Consensus 150 -------------i~~a~NVIIRnL~ir~g~~--~~---~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~------ 205 (377)
+...++.+++||+|+...+ .. --|+-+...++.++|..|.+--..|-++.-..+..
T Consensus 172 ~~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn 251 (405)
T COG4677 172 RSATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETN 251 (405)
T ss_pred hhhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccC
Confidence 1135789999999996432 11 13555655678899999999988888765543211
Q ss_pred ---eEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccc
Q 017111 206 ---DITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR 255 (377)
Q Consensus 206 ---~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r 255 (377)
.--+.+|.|+.| --+++|+. .+-||+|-|.-+..|.+-..
T Consensus 252 ~~~R~yftNsyI~Gd-vDfIfGsg---------taVFd~c~i~~~d~r~~~~g 294 (405)
T COG4677 252 RQPRTYFTNSYIEGD-VDFIFGSG---------TAVFDNCEIQVVDSRTQQEG 294 (405)
T ss_pred cchhhheecceeccc-ceEEeccc---------eEEeccceEEEeccCCCcce
Confidence 122346666533 23455543 45678887877788875443
No 73
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=77.04 E-value=6.5 Score=38.58 Aligned_cols=64 Identities=17% Similarity=0.355 Sum_probs=48.8
Q ss_pred eeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCCC
Q 017111 152 ECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (377)
Q Consensus 152 ~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d 227 (377)
+++|..|.|.+|..|. .+ +. .++||-+++|.|.|-+= +++ ++++.|.+|.|..-.++.||.+.+
T Consensus 17 ~~~d~~l~~~~f~dGE----S~--LK-es~nI~~~~~~F~~KYP----~Wh-~~~~~i~~~~f~~~aRa~iWYs~~ 80 (277)
T PF12541_consen 17 GSHDLRLENCTFADGE----SP--LK-ESRNIELKNCIFKWKYP----LWH-SDNIKIENCYFTEMARAAIWYSNN 80 (277)
T ss_pred ccCCCEEEeeEEeCCC----cc--cc-cccceEEECCEEeeECc----eEE-ECCeEEEeeEEeecceeeeeEeCC
Confidence 4789999999999764 23 33 58899999999987542 222 567888999999888888887653
No 74
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=74.31 E-value=5.5 Score=27.55 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=21.9
Q ss_pred ceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 173 AIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 173 aI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
||.+. .+.+..|..|.++...|| |.+. .+.+-+|..|.|.
T Consensus 1 GI~l~-~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLE-SSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTAS 40 (44)
T ss_pred CEEEE-ecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEE
Confidence 34554 445555666666666664 4442 3455555655554
No 75
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=73.78 E-value=12 Score=39.88 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=37.5
Q ss_pred CCcEEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017111 145 GKGLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (377)
Q Consensus 145 G~gl~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglid 199 (377)
-..+.+. +++++.|||+|+...+. ..-|+-++-.++++-+.+|.|.-..|-|++
T Consensus 262 SaT~~v~-~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 262 TATFTIT-GDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred ceeEEEE-CCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchhee
Confidence 3346665 88999999999976432 123444433578899999999877666554
No 76
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=67.37 E-value=30 Score=34.06 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=18.1
Q ss_pred eEEEecceecCCCCCCCccccCeeEEEcceEEc
Q 017111 236 RVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268 (377)
Q Consensus 236 ~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n 268 (377)
++||-+|..... .|..-.-.+.+.|+-+.+
T Consensus 195 NltliNC~I~g~---QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 195 NLTLINCTIEGT---QPLCYCDNLVLENCTMID 224 (277)
T ss_pred CeEEEEeEEecc---CccEeecceEEeCcEeec
Confidence 677777766543 345544456677776654
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=66.05 E-value=37 Score=32.40 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=28.4
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (377)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~ 215 (377)
|.|. +-..|+|+.|-.. ..|+|-.. + ...|+.+=+.+..+..+.++..+..++|..+-+.
T Consensus 57 F~le--~GatlkNvIiG~~---~~dGIHC~-G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~ 116 (215)
T PF03211_consen 57 FILE--DGATLKNVIIGAN---QADGIHCK-G--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGAR 116 (215)
T ss_dssp EEEE--TTEEEEEEEETSS----TT-EEEE-S--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEE
T ss_pred EEec--CCCEEEEEEEcCC---CcCceEEc-C--CEEEEEEEecccceeeeEEcCCCceEEEeCCccc
Confidence 5554 2344555544221 23566554 2 3445555555555555666544435666655544
No 78
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=63.47 E-value=43 Score=31.41 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=44.9
Q ss_pred CCceEEEEceeeecC-CCCceEee-----eCCceEEEeCceecCCCceeEec--CCCCCCC-CcceeEEEecceecCCCC
Q 017111 179 KSKHIWIDRCSLRDY-DDGLIDIT-----RESTDITVSRCHFSSHDKTMLIG--ADPSHVA-DRCIRVTIHHCFFDGTRQ 249 (377)
Q Consensus 179 ~s~nVwIDHcs~s~~-~Dglidi~-----~~s~~vTIS~n~f~~h~k~~LiG--~~d~~~~-d~~~~VT~hhNlf~~~~~ 249 (377)
.+++|+|.|+.|... ....++.. .+-.+..|.+|.|+.-..+.+.- -...... ..+..+++.+|.+.++..
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 467999999999763 23333322 23457789999999765544332 1111111 224466678889999987
Q ss_pred CC
Q 017111 250 RH 251 (377)
Q Consensus 250 R~ 251 (377)
|.
T Consensus 112 r~ 113 (198)
T PF08480_consen 112 RK 113 (198)
T ss_pred cc
Confidence 73
No 79
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=55.50 E-value=56 Score=31.78 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=48.5
Q ss_pred eCCcEEEeeeccEEEeeeEEeCCCCCCCCceEec-----CCCceEEEEceeeecCCCCceEeeeC--CceEEEeCceecC
Q 017111 144 TGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIK-----PKSKHIWIDRCSLRDYDDGLIDITRE--STDITVSRCHFSS 216 (377)
Q Consensus 144 ~G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~-----~~s~nVwIDHcs~s~~~Dglidi~~~--s~~vTIS~n~f~~ 216 (377)
.|.++.|.. .+..|+|-+|.+.. .+||.+. ....++.|.-+++.....| |++... .....|.+|+|.+
T Consensus 113 ~g~Gi~Ies-s~~tI~Nntf~~~~---~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G-i~i~~~~~~~~n~I~NN~I~~ 187 (246)
T PF07602_consen 113 RGTGIWIES-SSPTIANNTFTNNG---REGIFVTGTSANPGINGNVISGNSIYFNKTG-ISISDNAAPVENKIENNIIEN 187 (246)
T ss_pred cceEEEEec-CCcEEEeeEEECCc---cccEEEEeeecCCcccceEeecceEEecCcC-eEEEcccCCccceeeccEEEe
Confidence 344688874 49999999999853 3566553 2345566888888876666 555322 2224779999887
Q ss_pred CCceeE
Q 017111 217 HDKTML 222 (377)
Q Consensus 217 h~k~~L 222 (377)
...++.
T Consensus 188 N~~Gi~ 193 (246)
T PF07602_consen 188 NNIGIV 193 (246)
T ss_pred CCcCeE
Confidence 665543
No 80
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=46.07 E-value=99 Score=33.52 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=42.7
Q ss_pred cEEEeeec----cEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCC--Cce
Q 017111 147 GLRLKECE----HVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSH--DKT 220 (377)
Q Consensus 147 gl~i~~a~----NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h--~k~ 220 (377)
.+.|.+-. +..|+|+++-+.+-...|||.+. ..+. |+ ..|-+..|..|-+.+ ++++|++|-+-.- .-.
T Consensus 345 Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly-~nS~--i~-dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpi 418 (582)
T PF03718_consen 345 SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY-PNST--IR-DCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPI 418 (582)
T ss_dssp SEEEESSSGGGEEEEEEEEEEE---CTT----B---TT-E--EE-EEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-S
T ss_pred eEEecCCccccccceeeceeeeeeEEeccCCcccc-CCCe--ee-eeEEEecCchhheee--cCcceeeeEEEecCCCCe
Confidence 45666444 47899999998887788999997 3333 34 445566666676654 7899999987642 223
Q ss_pred eEecCCCCCCCC-cceeEEEeccee
Q 017111 221 MLIGADPSHVAD-RCIRVTIHHCFF 244 (377)
Q Consensus 221 ~LiG~~d~~~~d-~~~~VT~hhNlf 244 (377)
+-||+....+.+ .--++.+.|+.+
T Consensus 419 iq~GW~pr~isnv~veni~IIh~r~ 443 (582)
T PF03718_consen 419 IQWGWTPRNISNVSVENIDIIHNRW 443 (582)
T ss_dssp EE--CS---EEEEEEEEEEEEE---
T ss_pred EEeeccccccCceEEeeeEEEeeee
Confidence 555655322211 012666666633
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=44.49 E-value=50 Score=22.62 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=29.8
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec
Q 017111 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD 192 (377)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~ 192 (377)
||.+..+++..|++=+|... .|||.+. .+++..|..|.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----~~GI~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----SYGIYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----CCEEEEE-eCCCCEeECCEEEc
Confidence 56777777777777777754 4689987 66677778887764
No 82
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=34.59 E-value=1.1e+02 Score=31.62 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=43.5
Q ss_pred CceEEEeCceecCCC--ceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEEcCccceeeecCCce
Q 017111 204 STDITVSRCHFSSHD--KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQ 281 (377)
Q Consensus 204 s~~vTIS~n~f~~h~--k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~ 281 (377)
-..||+.+++|...+ .+.++=. ..+++||.+.|-+-..=.=..+ +...|....|+.-. -++......+
T Consensus 120 M~~VtF~ni~F~~~~~~~g~~f~~--------~t~~~~hgC~F~gf~g~cl~~~-~~~~VrGC~F~~C~-~gi~~~~~~~ 189 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRDTFSGVVFHA--------NTNTLFHGCSFFGFHGTCLESW-AGGEVRGCTFYGCW-KGIVSRGKSK 189 (386)
T ss_pred eeeeEEEEEEEecCCccceeEEEe--------cceEEEEeeEEecCcceeEEEc-CCcEEeeeEEEEEE-EEeecCCcce
Confidence 457888888887533 2333321 1267888888877655444444 45566666665421 2444444455
Q ss_pred EEEEceeEec
Q 017111 282 IYSQCNIYEA 291 (377)
Q Consensus 282 v~~e~N~F~~ 291 (377)
+.+-.++|+.
T Consensus 190 lsVk~C~Fek 199 (386)
T PF01696_consen 190 LSVKKCVFEK 199 (386)
T ss_pred EEeeheeeeh
Confidence 5555666654
No 83
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=33.50 E-value=1.8e+02 Score=25.54 Aligned_cols=58 Identities=26% Similarity=0.247 Sum_probs=39.7
Q ss_pred ccEEEeeeEEeCCCC------------CCCCceEecCCCceEEEEceeeec---CCCCceEeeeCCceE-EEeCc
Q 017111 154 EHVIICNLEFEGGKG------------PDVDAIQIKPKSKHIWIDRCSLRD---YDDGLIDITRESTDI-TVSRC 212 (377)
Q Consensus 154 ~NVIIRnL~ir~g~~------------~~~DaI~i~~~s~nVwIDHcs~s~---~~Dglidi~~~s~~v-TIS~n 212 (377)
.++-|||..++.|+- .+.|.+.|. .....+|--|.=++ +..|.||+..+...| ||.|.
T Consensus 15 ~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~-~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyWd 88 (131)
T PF06355_consen 15 GDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIP-PGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYWD 88 (131)
T ss_pred ccEEEEccEeccCccccCCCcCCEeCccccCceEec-CCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEEe
Confidence 478888888887641 235677775 35667888887755 578899998665555 66554
No 84
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.87 E-value=46 Score=37.55 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=9.5
Q ss_pred eEEEecceecCCCCCCCcc
Q 017111 236 RVTIHHCFFDGTRQRHPRV 254 (377)
Q Consensus 236 ~VT~hhNlf~~~~~R~Pr~ 254 (377)
+.|+-|=|-+-|...-|++
T Consensus 860 k~TLLHfLae~~e~kypd~ 878 (1102)
T KOG1924|consen 860 KTTLLHFLAEICEEKYPDI 878 (1102)
T ss_pred hhHHHHHHHHHHHHhChhh
Confidence 4555554444444444443
No 85
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=29.79 E-value=75 Score=18.08 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=7.2
Q ss_pred eEEEEceeeecCCC
Q 017111 182 HIWIDRCSLRDYDD 195 (377)
Q Consensus 182 nVwIDHcs~s~~~D 195 (377)
+++|.+|.|.....
T Consensus 3 ~~~i~~n~i~~~~~ 16 (26)
T smart00710 3 NVTIENNTIRNNGG 16 (26)
T ss_pred CEEEECCEEEeCCC
Confidence 45555555555444
No 86
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=28.58 E-value=2.5e+02 Score=22.94 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=29.3
Q ss_pred cCcceeecccceEEe-C----CcEEEeeeccEEEeeeEEeC----CCC--CCCCceEecCCCceEEEEceeeecC
Q 017111 130 SYKTIDGRGQRVKLT-G----KGLRLKECEHVIICNLEFEG----GKG--PDVDAIQIKPKSKHIWIDRCSLRDY 193 (377)
Q Consensus 130 sn~TI~G~G~g~~I~-G----~gl~i~~a~NVIIRnL~ir~----g~~--~~~DaI~i~~~s~nVwIDHcs~s~~ 193 (377)
+++++.+.+ +..|. + ..+.+. +++|.++.+.++. |.. ....++. . .+++..|.+|.+...
T Consensus 18 ~~~~~~~~~-~~vi~~~~~~~~~~~i~-~~~~~~~G~~~~~~~~~G~~~~~~~~~~~-~-~~~~~~i~~N~~~~~ 88 (146)
T smart00722 18 GNVTNGGSG-GAVITDGSGRGSNITIN-SNDVRVDGITIGGSTVTGIYVSASGDGVI-Q-NTGKNLIIDNVTING 88 (146)
T ss_pred CCeEeeCcC-CEEEEecCCcEEEEEEe-CCCCEEECeEEEeEEeeCcccccCCceEe-c-CccccEEEcceecCC
Confidence 345555542 34443 2 224454 5677777777775 211 1122332 2 445555666665554
No 87
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=22.94 E-value=61 Score=24.76 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=13.7
Q ss_pred CceEecCCCceEEEEceee
Q 017111 172 DAIQIKPKSKHIWIDRCSL 190 (377)
Q Consensus 172 DaI~i~~~s~nVwIDHcs~ 190 (377)
+-|.+.-.+.-|||+||+=
T Consensus 14 ~~i~VtY~G~pV~Ie~vde 32 (59)
T PRK03174 14 DMANVTYNGVPIYIQHVDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 4455544678999999973
No 88
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=20.05 E-value=76 Score=24.24 Aligned_cols=19 Identities=21% Similarity=0.644 Sum_probs=13.6
Q ss_pred CceEecCCCceEEEEceee
Q 017111 172 DAIQIKPKSKHIWIDRCSL 190 (377)
Q Consensus 172 DaI~i~~~s~nVwIDHcs~ 190 (377)
+-|.+.-.+.-|||+|++=
T Consensus 14 ~~i~V~Y~G~pV~Iq~vde 32 (59)
T PRK01625 14 SRIDVTYEGVPVWIESCDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 4455544678999999973
No 89
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=20.02 E-value=76 Score=24.13 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=13.2
Q ss_pred CceEecCCCceEEEEcee
Q 017111 172 DAIQIKPKSKHIWIDRCS 189 (377)
Q Consensus 172 DaI~i~~~s~nVwIDHcs 189 (377)
+-|.+.-.+.-|||+|++
T Consensus 14 ~~i~V~Y~G~pV~Ie~vd 31 (58)
T TIGR02861 14 EMINVTYKGVPVYIEHVD 31 (58)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 345554467899999997
Done!