Query 017112
Match_columns 377
No_of_seqs 202 out of 1362
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 2E-72 4.3E-77 563.7 43.5 376 2-377 160-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 3.9E-68 8.4E-73 529.2 39.5 359 2-377 186-554 (596)
3 PLN02792 oxidoreductase 100.0 3E-67 6.6E-72 520.6 37.3 339 5-377 176-523 (536)
4 KOG1263 Multicopper oxidases [ 100.0 1.5E-66 3.3E-71 512.3 38.3 363 2-377 186-555 (563)
5 PLN02991 oxidoreductase 100.0 3.3E-66 7.1E-71 512.6 38.3 340 2-377 184-530 (543)
6 PLN02835 oxidoreductase 100.0 2.2E-65 4.8E-70 508.9 38.2 339 2-377 185-531 (539)
7 PLN02354 copper ion binding / 100.0 1.1E-64 2.5E-69 504.5 38.7 348 2-377 183-538 (552)
8 PLN02168 copper ion binding / 100.0 8.6E-64 1.9E-68 496.2 36.9 339 3-377 183-541 (545)
9 PLN02604 oxidoreductase 100.0 2.8E-63 6.1E-68 498.8 39.9 351 6-377 186-561 (566)
10 TIGR03388 ascorbase L-ascorbat 100.0 4.6E-63 9.9E-68 495.8 38.7 350 6-377 163-538 (541)
11 PLN02191 L-ascorbate oxidase 100.0 1.3E-62 2.7E-67 493.1 38.0 349 6-377 185-561 (574)
12 TIGR03390 ascorbOXfungal L-asc 100.0 5.7E-59 1.2E-63 465.0 34.9 332 6-360 169-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.6E-45 3.5E-50 368.2 30.6 260 10-358 248-587 (587)
14 PRK10965 multicopper oxidase; 100.0 4.6E-45 9.9E-50 362.2 30.1 267 6-358 210-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 4.1E-45 8.9E-50 359.5 27.6 250 6-359 207-469 (471)
16 COG2132 SufI Putative multicop 100.0 2.9E-36 6.2E-41 297.8 27.2 260 6-358 187-449 (451)
17 PF07731 Cu-oxidase_2: Multico 100.0 9.7E-31 2.1E-35 217.7 11.2 108 248-359 29-136 (138)
18 PF00394 Cu-oxidase: Multicopp 100.0 1.7E-28 3.8E-33 208.7 14.4 121 5-127 33-158 (159)
19 TIGR02376 Cu_nitrite_red nitri 99.7 2.8E-17 6E-22 154.1 10.0 111 6-128 186-298 (311)
20 TIGR02376 Cu_nitrite_red nitri 99.6 1.6E-13 3.5E-18 128.7 25.0 247 8-358 47-296 (311)
21 PLN02604 oxidoreductase 99.2 6.2E-11 1.4E-15 120.1 10.9 92 253-361 55-146 (566)
22 PF07732 Cu-oxidase_3: Multico 99.1 5.2E-10 1.1E-14 89.7 8.3 91 252-360 25-116 (117)
23 TIGR03389 laccase laccase, pla 99.0 1.1E-07 2.4E-12 96.2 22.3 238 9-343 23-264 (539)
24 TIGR03388 ascorbase L-ascorbat 98.8 1.8E-08 3.9E-13 101.9 10.0 92 253-361 32-123 (541)
25 PLN02835 oxidoreductase 98.8 1.3E-06 2.7E-11 88.2 21.3 73 254-340 203-276 (539)
26 PLN02354 copper ion binding / 98.7 2.6E-06 5.7E-11 86.1 20.5 235 9-342 47-283 (552)
27 PLN02792 oxidoreductase 98.7 2.6E-06 5.6E-11 85.8 20.1 73 254-340 194-267 (536)
28 PLN02991 oxidoreductase 98.6 3E-06 6.5E-11 85.3 19.8 226 9-339 48-276 (543)
29 PRK10883 FtsI repressor; Provi 98.6 6.7E-06 1.5E-10 81.8 20.6 74 254-341 221-295 (471)
30 PLN02168 copper ion binding / 98.5 7.1E-06 1.5E-10 82.7 19.3 66 254-333 202-267 (545)
31 TIGR03390 ascorbOXfungal L-asc 98.5 1.3E-05 2.8E-10 81.2 20.9 236 9-334 28-266 (538)
32 PLN00044 multi-copper oxidase- 98.5 1.8E-05 3.9E-10 80.4 21.5 239 9-338 49-291 (596)
33 PRK10965 multicopper oxidase; 98.5 9.3E-06 2E-10 81.7 19.2 80 9-106 66-145 (523)
34 PLN02191 L-ascorbate oxidase 98.5 6.4E-07 1.4E-11 91.0 10.7 85 253-360 54-144 (574)
35 TIGR03095 rusti_cyanin rusticy 98.5 6.5E-07 1.4E-11 74.6 8.5 90 253-358 52-148 (148)
36 PF00394 Cu-oxidase: Multicopp 98.4 1.1E-06 2.5E-11 74.5 8.0 94 252-359 59-157 (159)
37 TIGR01480 copper_res_A copper- 98.3 4E-06 8.6E-11 85.2 9.8 88 253-360 76-163 (587)
38 TIGR02656 cyanin_plasto plasto 98.0 2.3E-05 4.9E-10 60.9 7.4 82 254-358 18-99 (99)
39 PF07731 Cu-oxidase_2: Multico 98.0 7.2E-05 1.6E-09 61.7 10.8 77 28-106 33-120 (138)
40 TIGR03096 nitroso_cyanin nitro 97.8 0.00013 2.9E-09 59.0 7.9 59 254-343 62-120 (135)
41 KOG1263 Multicopper oxidases [ 97.6 0.00027 5.9E-09 71.2 9.2 91 253-362 59-150 (563)
42 PF00127 Copper-bind: Copper b 97.6 0.0003 6.5E-09 54.6 7.5 83 253-358 17-99 (99)
43 PRK02888 nitrous-oxide reducta 97.5 0.00038 8.3E-09 70.1 8.7 78 254-359 556-634 (635)
44 PF13473 Cupredoxin_1: Cupredo 97.1 0.0015 3.2E-08 51.1 6.7 68 254-356 36-103 (104)
45 PRK02710 plastocyanin; Provisi 97.1 0.0017 3.8E-08 52.1 6.8 72 254-358 48-119 (119)
46 COG4454 Uncharacterized copper 96.7 0.0049 1.1E-07 50.7 6.2 94 254-358 64-157 (158)
47 PF07732 Cu-oxidase_3: Multico 96.4 0.0038 8.2E-08 50.0 3.7 85 8-106 14-99 (117)
48 COG2132 SufI Putative multicop 96.4 0.019 4.1E-07 57.2 9.5 88 9-105 343-433 (451)
49 TIGR02375 pseudoazurin pseudoa 96.3 0.017 3.7E-07 46.0 6.8 38 321-362 54-91 (116)
50 TIGR03095 rusti_cyanin rusticy 96.0 0.034 7.4E-07 46.4 7.6 84 8-105 41-132 (148)
51 TIGR02657 amicyanin amicyanin. 96.0 0.044 9.6E-07 40.8 7.5 72 254-358 12-83 (83)
52 TIGR03102 halo_cynanin halocya 95.5 0.078 1.7E-06 42.1 7.7 73 254-358 43-115 (115)
53 TIGR03096 nitroso_cyanin nitro 95.5 0.072 1.6E-06 43.3 7.3 60 28-105 60-119 (135)
54 PF06525 SoxE: Sulfocyanin (So 95.0 0.41 8.8E-06 41.4 10.9 102 250-361 83-189 (196)
55 PF13473 Cupredoxin_1: Cupredo 94.8 0.13 2.8E-06 40.0 7.0 60 28-105 34-93 (104)
56 PF00116 COX2: Cytochrome C ox 94.7 0.28 6E-06 39.4 8.8 74 252-357 45-119 (120)
57 TIGR02866 CoxB cytochrome c ox 93.6 0.28 6.1E-06 43.2 7.3 74 253-360 117-193 (201)
58 TIGR03094 sulfo_cyanin sulfocy 93.5 0.96 2.1E-05 38.5 9.8 101 250-360 82-187 (195)
59 COG3794 PetE Plastocyanin [Ene 93.1 0.45 9.7E-06 38.5 7.1 73 254-358 55-127 (128)
60 PF06525 SoxE: Sulfocyanin (So 91.2 1.3 2.8E-05 38.4 8.0 79 25-105 82-170 (196)
61 TIGR02656 cyanin_plasto plasto 87.5 1.9 4.1E-05 33.1 5.9 68 28-105 16-85 (99)
62 COG4454 Uncharacterized copper 85.6 1.7 3.7E-05 36.1 4.8 74 28-105 62-141 (158)
63 COG1622 CyoA Heme/copper-type 84.5 3.3 7E-05 37.6 6.6 77 253-361 137-214 (247)
64 PF12690 BsuPI: Intracellular 82.7 6.6 0.00014 29.1 6.6 64 40-104 5-82 (82)
65 TIGR02695 azurin azurin. Azuri 82.4 11 0.00025 30.1 8.1 76 28-103 15-109 (125)
66 PF14344 DUF4397: Domain of un 82.3 23 0.00049 28.0 11.7 39 57-95 43-83 (122)
67 MTH00047 COX2 cytochrome c oxi 76.6 21 0.00045 31.2 8.8 75 253-359 116-191 (194)
68 PTZ00047 cytochrome c oxidase 75.2 14 0.0003 31.1 7.0 73 253-359 73-148 (162)
69 MTH00140 COX2 cytochrome c oxi 74.6 18 0.00039 32.4 8.2 76 252-359 139-215 (228)
70 PF11142 DUF2917: Protein of u 74.0 13 0.00027 26.1 5.5 46 31-88 2-47 (63)
71 PF07691 PA14: PA14 domain; I 73.6 34 0.00073 27.6 9.1 62 30-96 53-121 (145)
72 PF04151 PPC: Bacterial pre-pe 71.9 24 0.00051 24.9 6.8 66 28-105 4-69 (70)
73 TIGR02695 azurin azurin. Azuri 71.5 39 0.00085 27.1 8.3 96 253-356 16-124 (125)
74 smart00758 PA14 domain in bact 70.5 35 0.00076 27.4 8.4 64 30-98 51-115 (136)
75 PRK02888 nitrous-oxide reducta 66.7 23 0.0005 36.5 7.7 29 78-107 590-618 (635)
76 PRK02710 plastocyanin; Provisi 66.2 25 0.00055 27.9 6.5 60 28-105 46-105 (119)
77 PF07705 CARDB: CARDB; InterP 65.9 52 0.0011 24.4 9.1 69 31-108 13-85 (101)
78 PF10633 NPCBM_assoc: NPCBM-as 63.9 48 0.001 23.8 7.2 65 33-106 1-75 (78)
79 TIGR01433 CyoA cytochrome o ub 63.8 22 0.00049 31.8 6.3 73 253-359 139-214 (226)
80 TIGR01432 QOXA cytochrome aa3 63.1 22 0.00047 31.7 6.1 76 253-360 130-206 (217)
81 PF00127 Copper-bind: Copper b 62.2 15 0.00032 28.1 4.3 65 28-106 16-86 (99)
82 PF01835 A2M_N: MG2 domain; I 58.8 66 0.0014 24.1 7.5 69 33-106 11-85 (99)
83 MTH00008 COX2 cytochrome c oxi 58.5 40 0.00087 30.2 7.0 76 252-359 139-215 (228)
84 PF00116 COX2: Cytochrome C ox 58.3 93 0.002 24.7 9.9 63 28-109 45-107 (120)
85 COG4263 NosZ Nitrous oxide red 57.6 39 0.00084 33.3 7.0 42 316-357 593-635 (637)
86 MTH00023 COX2 cytochrome c oxi 52.3 58 0.0012 29.5 7.0 75 253-359 151-226 (240)
87 MTH00139 COX2 cytochrome c oxi 52.1 51 0.0011 29.5 6.7 76 252-359 139-215 (226)
88 MTH00038 COX2 cytochrome c oxi 51.8 59 0.0013 29.2 7.0 74 253-358 140-214 (229)
89 PF15415 DUF4622: Protein of u 48.0 74 0.0016 28.6 6.7 43 29-73 94-138 (310)
90 MTH00098 COX2 cytochrome c oxi 47.9 75 0.0016 28.5 7.0 75 253-359 140-215 (227)
91 PRK10378 inactive ferrous ion 46.9 78 0.0017 30.7 7.3 38 318-360 81-118 (375)
92 PF04379 DUF525: Protein of un 46.2 48 0.001 25.0 4.7 28 38-68 15-42 (90)
93 PF11614 FixG_C: IG-like fold 45.9 63 0.0014 25.3 5.7 48 38-94 34-83 (118)
94 MTH00051 COX2 cytochrome c oxi 45.5 84 0.0018 28.3 7.0 76 252-359 143-219 (234)
95 PRK10525 cytochrome o ubiquino 43.8 62 0.0013 30.6 6.0 74 253-358 151-225 (315)
96 MTH00154 COX2 cytochrome c oxi 43.4 84 0.0018 28.2 6.6 75 253-359 140-215 (227)
97 MTH00129 COX2 cytochrome c oxi 43.1 1.3E+02 0.0028 27.0 7.7 75 253-359 140-215 (230)
98 PF14874 PapD-like: Flagellar- 43.1 1.4E+02 0.0031 22.4 8.2 59 32-101 15-81 (102)
99 COG1470 Predicted membrane pro 42.2 2E+02 0.0042 28.8 9.1 75 28-109 388-470 (513)
100 PRK09918 putative fimbrial cha 41.9 88 0.0019 28.0 6.5 62 28-94 75-136 (230)
101 PF14524 Wzt_C: Wzt C-terminal 41.3 1.1E+02 0.0023 24.3 6.6 72 32-106 30-107 (142)
102 MTH00185 COX2 cytochrome c oxi 40.0 1.6E+02 0.0034 26.5 7.8 76 252-359 139-215 (230)
103 TIGR03094 sulfo_cyanin sulfocy 39.4 1.5E+02 0.0032 25.6 7.0 78 26-105 82-169 (195)
104 COG3354 FlaG Putative archaeal 39.3 1.4E+02 0.003 24.6 6.5 64 37-105 70-141 (154)
105 MTH00117 COX2 cytochrome c oxi 38.2 1.2E+02 0.0026 27.1 6.8 75 253-359 140-215 (227)
106 PRK05461 apaG CO2+/MG2+ efflux 37.8 1.1E+02 0.0023 24.8 5.7 48 38-88 32-83 (127)
107 PF14392 zf-CCHC_4: Zinc knuck 37.6 39 0.00084 22.1 2.7 41 309-349 4-45 (49)
108 PRK15249 fimbrial chaperone pr 36.0 45 0.00098 30.4 3.7 61 28-94 85-152 (253)
109 KOG4078 Putative mitochondrial 35.1 22 0.00047 28.9 1.3 37 33-71 120-156 (173)
110 MTH00080 COX2 cytochrome c oxi 34.8 1.5E+02 0.0032 26.7 6.8 75 252-360 142-219 (231)
111 TIGR02866 CoxB cytochrome c ox 34.3 2E+02 0.0044 25.0 7.5 30 78-108 148-177 (201)
112 PRK09926 putative chaperone pr 34.1 46 0.001 30.2 3.5 21 28-48 81-101 (246)
113 MTH00076 COX2 cytochrome c oxi 33.9 2.4E+02 0.0052 25.3 8.0 75 253-359 140-215 (228)
114 TIGR02745 ccoG_rdxA_fixG cytoc 33.6 1.4E+02 0.003 29.7 6.9 49 37-94 348-398 (434)
115 PF10989 DUF2808: Protein of u 33.1 50 0.0011 27.3 3.3 26 318-343 98-127 (146)
116 MTH00168 COX2 cytochrome c oxi 33.1 1.4E+02 0.003 26.7 6.3 76 252-359 139-215 (225)
117 PRK15195 fimbrial chaperone pr 32.4 58 0.0012 29.2 3.8 33 28-60 77-115 (229)
118 PF10636 hemP: Hemin uptake pr 31.5 88 0.0019 19.5 3.3 19 29-47 14-32 (38)
119 PRK15295 fimbrial assembly cha 29.9 1.7E+02 0.0037 26.1 6.4 63 28-94 72-136 (226)
120 COG3121 FimC P pilus assembly 29.6 1.2E+02 0.0026 27.3 5.3 64 28-95 80-146 (235)
121 PF13464 DUF4115: Domain of un 29.4 1.5E+02 0.0034 21.1 5.0 10 32-41 25-34 (77)
122 PF00345 PapD_N: Pili and flag 29.0 85 0.0018 24.7 3.9 21 28-48 55-75 (122)
123 PRK11385 putativi pili assembl 28.9 1.5E+02 0.0032 26.7 5.8 57 28-94 84-147 (236)
124 PF03459 TOBE: TOBE domain; I 28.7 58 0.0013 22.2 2.6 48 41-94 12-60 (64)
125 PRK15299 fimbrial chaperone pr 27.5 1.8E+02 0.004 25.9 6.2 62 28-93 76-139 (227)
126 PRK15208 long polar fimbrial c 27.4 1.1E+02 0.0023 27.4 4.7 63 28-94 73-138 (228)
127 COG3577 Predicted aspartyl pro 26.2 75 0.0016 27.9 3.2 34 57-90 145-179 (215)
128 MTH00027 COX2 cytochrome c oxi 26.1 2E+02 0.0044 26.4 6.2 75 253-359 174-249 (262)
129 PRK10183 hypothetical protein; 25.4 1.2E+02 0.0025 20.7 3.3 20 28-47 31-50 (56)
130 PF07228 SpoIIE: Stage II spor 25.0 1.6E+02 0.0034 24.9 5.2 55 31-86 67-126 (193)
131 PF14016 DUF4232: Protein of u 24.6 3.5E+02 0.0075 21.5 6.8 56 38-95 21-82 (131)
132 PF14734 DUF4469: Domain of un 24.5 1.7E+02 0.0037 22.6 4.6 45 62-106 41-85 (102)
133 PF06775 Seipin: Putative adip 24.2 88 0.0019 27.3 3.4 29 78-106 50-85 (199)
134 PRK15192 fimbrial chaperone Bc 23.2 2.6E+02 0.0057 25.1 6.3 57 28-94 80-142 (234)
135 PRK15254 fimbrial chaperone pr 22.8 2.1E+02 0.0045 25.9 5.6 57 28-94 68-133 (239)
136 PF06832 BiPBP_C: Penicillin-B 21.8 1.3E+02 0.0027 22.2 3.4 12 58-69 72-83 (89)
137 PF05938 Self-incomp_S1: Plant 21.6 1.6E+02 0.0034 22.7 4.1 39 316-357 28-68 (110)
138 PRK15211 fimbrial chaperone pr 21.6 2.6E+02 0.0055 25.1 5.9 59 28-94 74-138 (229)
139 KOG4605 Uncharacterized conser 21.2 1.3E+02 0.0029 23.8 3.4 25 28-52 47-71 (129)
140 PRK03999 translation initiatio 21.1 4.5E+02 0.0097 21.2 8.2 40 8-57 14-60 (129)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=2e-72 Score=563.65 Aligned_cols=376 Identities=68% Similarity=1.155 Sum_probs=295.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEe
Q 017112 2 GLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILI 81 (377)
Q Consensus 2 ~~~p~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l 81 (377)
|..|+.+|++|||||.+..++|+....+.|+|++||+|||||||+|+.+.+.|+||||+|+|||+||.+++|+.+++|.|
T Consensus 160 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i 239 (539)
T TIGR03389 160 GGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVI 239 (539)
T ss_pred CCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEe
Confidence 44577899999999987788998877889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhccCCCCC
Q 017112 82 APGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSP 161 (377)
Q Consensus 82 ~~GqR~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~ 161 (377)
++||||||+|++++.+|+||||+.+...+..........|+|+|.+......+..+..+..+.......+...++++..+
T Consensus 240 ~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (539)
T TIGR03389 240 GPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSA 319 (539)
T ss_pred cCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhccccccc
Confidence 99999999999998789999999876444222234568899999875443222222223233322112222334444433
Q ss_pred CCCCCCCcccceeEEEEeccCCCCCC--c--ccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCCC
Q 017112 162 KFPADVPQKVDRKLFYTIGFGKDSCP--T--CVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNY 237 (377)
Q Consensus 162 ~~p~~~p~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (377)
.+|..+|..+++++.+.+++...... . ..++..+.|++|+++|..|.+++|++.+.+++|.+..++++.+|..+++
T Consensus 320 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~ 399 (539)
T TIGR03389 320 QYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNY 399 (539)
T ss_pred CCCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccC
Confidence 34444444566666666554321110 0 1124567899999999999889888887777777777788888888877
Q ss_pred CCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcccee
Q 017112 238 TGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTA 317 (377)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv 317 (377)
++.....++..+.++.++.++.|++|+|+|+|.+.+....||||||||+||||++|.|.|+.......+|++||++|||+
T Consensus 400 ~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv 479 (539)
T TIGR03389 400 TGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTV 479 (539)
T ss_pred CCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeE
Confidence 66532222233446678999999999999999753334589999999999999999999886555557899999999999
Q ss_pred eeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCCCCCCCCCCCCCCCC
Q 017112 318 AVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 377 (377)
Q Consensus 318 ~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~~~~~~~c 377 (377)
.|+++||++|||++||||.|+|||||+||+..||+++|++.++.+...+++++|..+|.|
T Consensus 480 ~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 480 GVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred EcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 999999999999999999999999999999999999999988877778899999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3.9e-68 Score=529.17 Aligned_cols=359 Identities=28% Similarity=0.398 Sum_probs=275.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCC----CCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEec
Q 017112 2 GLPPNMSDAHTINGKPGPLFPCS----EKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTE 77 (377)
Q Consensus 2 ~~~p~~~d~~liNG~~~~~~~~~----~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~ 77 (377)
|..+..+|++||||+....++|+ +...++++|++||+|||||||+|+.+.++|+||||+|+|||+||.+++|+.++
T Consensus 186 g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd 265 (596)
T PLN00044 186 GDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYT 265 (596)
T ss_pred CCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeee
Confidence 33456789999999965455665 23456899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEEEeCCCCC-ceeEEeecc-CCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCC-CCChhhHHhhhhh
Q 017112 78 AILIAPGQTTNVLVQANQKPG-RYFMAARPF-NDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPA-SNDSEFALNYNKK 154 (377)
Q Consensus 78 ~l~l~~GqR~dvlv~~~~~~g-~y~l~~~~~-~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~ 154 (377)
.|.|++||||||||+++|.++ +|||++... ..+. ..+.....|||+|++.........|..|. .++......+...
T Consensus 266 ~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~ 344 (596)
T PLN00044 266 NLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAA-VVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARS 344 (596)
T ss_pred eEEEcCCceEEEEEECCCCCCCceEEEEecccccCc-cccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHh
Confidence 999999999999999998765 899998642 2221 13456788999998754321111233342 4444433334444
Q ss_pred ccCCCCCCCCCCCCcccceeEEEEeccCCC-CC-CcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCC
Q 017112 155 LRSLNSPKFPADVPQKVDRKLFYTIGFGKD-SC-PTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPP 232 (377)
Q Consensus 155 l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p 232 (377)
++.+.....+...|...++...++++.... .. ......++..|++||++|..|++++|.+++.+++|.++.++++.+|
T Consensus 345 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp 424 (596)
T PLN00044 345 IRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPM 424 (596)
T ss_pred hhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCC
Confidence 543332222222233333333333321110 00 0001113678999999999999999988888889999888888877
Q ss_pred CCCCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCC
Q 017112 233 KPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPI 312 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~ 312 (377)
... ...++.+..++.|++|||+|+|.. ...||||||||+|+||++|.|.|++. ++..||+.||+
T Consensus 425 ~~~------------~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp 488 (596)
T PLN00044 425 NRL------------PKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGV 488 (596)
T ss_pred ccc------------cccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEeecCCCCCCC-cccccccCCCC
Confidence 421 123466789999999999999963 45899999999999999999999965 56689999999
Q ss_pred ccceeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCC-CCCCCCCCCCCCCC
Q 017112 313 ERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGP-DQSVLPPPTDLPPC 377 (377)
Q Consensus 313 ~rDtv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~-~~~~~~~~~~~~~c 377 (377)
+|||+.|+++||++|||++||||+|+||||+..|...||...|.|+++.+. .+++.+||.+.+.|
T Consensus 489 ~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 489 ARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred ccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcc
Confidence 999999999999999999999999999999999999999999999998875 77899999999999
No 3
>PLN02792 oxidoreductase
Probab=100.00 E-value=3e-67 Score=520.60 Aligned_cols=339 Identities=29% Similarity=0.424 Sum_probs=261.3
Q ss_pred CCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCC
Q 017112 5 PNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPG 84 (377)
Q Consensus 5 p~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~G 84 (377)
+..+|++||||+... ..+.|+|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|+.+++|.|++|
T Consensus 176 ~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~G 248 (536)
T PLN02792 176 PLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVG 248 (536)
T ss_pred CCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccC
Confidence 448999999999631 1468999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhccCCCCCCCC
Q 017112 85 QTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFP 164 (377)
Q Consensus 85 qR~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p 164 (377)
|||||||++++++|+|||++.....+ .+....|||+|.+...... ..+..|..++......+...++.+..+..|
T Consensus 249 qRydVlV~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~ 323 (536)
T PLN02792 249 QTYSVLVTMDQPPQNYSIVVSTRFIA----AKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGP 323 (536)
T ss_pred ceEEEEEEcCCCCceEEEEEEeccCC----CCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCC
Confidence 99999999998889999999864322 2346789999987543211 112233333332222121112221111112
Q ss_pred CCCCcccc--------eeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccC-CCCCCCCCC
Q 017112 165 ADVPQKVD--------RKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKAD-FPDKPPKPF 235 (377)
Q Consensus 165 ~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~-~~~~~p~~~ 235 (377)
..+|...+ +++.+..... . ..++..|++||++|..|++++|.+.+.+++|.++.+ +++.+|...
T Consensus 324 ~~~p~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~ 396 (536)
T PLN02792 324 RTNPQGSYHYGKMKISRTLILESSAA-----L--VKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGG 396 (536)
T ss_pred CCCCCcccccceeccceeEEeccccc-----c--cCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccC
Confidence 23332222 2222221111 1 123567999999999999999988777777877653 676666422
Q ss_pred CCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccc
Q 017112 236 NYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERN 315 (377)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rD 315 (377)
+ ...++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. ++..||+.||++||
T Consensus 397 ~-----------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nP~~Rd 461 (536)
T PLN02792 397 G-----------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SRREYNLKDAISRS 461 (536)
T ss_pred C-----------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-cccccCcCCCCccc
Confidence 1 123456788999999999999964 45799999999999999999999863 56689999999999
Q ss_pred eeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCCCCCCCCCCCCCCCC
Q 017112 316 TAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 377 (377)
Q Consensus 316 tv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~~~~~~~c 377 (377)
||.|+++||++|||++||||+|+||||+.+|+..||..+|.|.++.+..+++.+||.+.+.|
T Consensus 462 Tv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 462 TTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred eEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999999999999988888999999999999
No 4
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-66 Score=512.31 Aligned_cols=363 Identities=52% Similarity=0.873 Sum_probs=312.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEe
Q 017112 2 GLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILI 81 (377)
Q Consensus 2 ~~~p~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l 81 (377)
|..|+.+|..+|||+.+..++| .+.++|+|||+|||||||+|....+.|+|+||+|+|||+||.+++|+.+++|.|
T Consensus 186 ~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i 261 (563)
T KOG1263|consen 186 GALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDI 261 (563)
T ss_pred CCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEE
Confidence 4567779999999999999999 789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCceeEEeeccCCCC-CCCCCcceEEEEEEcCCCCCC-C--CCCCCCCCCCChhhHHhhhhhccC
Q 017112 82 APGQTTNVLVQANQKPGRYFMAARPFNDAP-IPVDNKTATGILQYKGIPNSL-L--PTLAQLPASNDSEFALNYNKKLRS 157 (377)
Q Consensus 82 ~~GqR~dvlv~~~~~~g~y~l~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~-~--~~~~~~p~~~~~~~~~~~~~~l~~ 157 (377)
+|||||||||+++|.+++|+|++.++..+. ... +....++++|.+..... . +..+..|..++...+..+...++.
T Consensus 262 ~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~ 340 (563)
T KOG1263|consen 262 HPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRS 340 (563)
T ss_pred cCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccc
Confidence 999999999999998889999999876643 222 67789999999732211 1 122334555565666667777888
Q ss_pred CCCCCCCCCCCcccceeEEEEeccCCCCCCcc-cCCceeeeeecceeeecCch-hhhhhhhcccCcccccCCCCCCCCCC
Q 017112 158 LNSPKFPADVPQKVDRKLFYTIGFGKDSCPTC-VNGTRLLATLNNISFVMPQT-ALLQAHYFNLKGVFKADFPDKPPKPF 235 (377)
Q Consensus 158 l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iN~~~~~~p~~-~l~~~~~~~~~~~~~~~~~~~~p~~~ 235 (377)
+....++..+|++.++...++++.+...+... ..+++..++||+.+|..|++ .++.++++.+++.++.++++.|+..+
T Consensus 341 ~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~ 420 (563)
T KOG1263|consen 341 LLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKF 420 (563)
T ss_pred cccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCcccc
Confidence 77777777788888887777777665443322 34668889999999999999 56677778888899999999999888
Q ss_pred CCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCC-CCCCCCCCCcc
Q 017112 236 NYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYP-ANYNLVDPIER 314 (377)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~-~~~~~~np~~r 314 (377)
++++ .+.++.++.+++++.||++|+|.+......||||||||.|+|++.|.|.|++.+++ ..+|+.+|..|
T Consensus 421 ~~~~--------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R 492 (563)
T KOG1263|consen 421 DYTG--------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSR 492 (563)
T ss_pred CCcc--------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCccc
Confidence 8765 35678899999999999999999877778899999999999999999999995566 78999999999
Q ss_pred ceeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCCCCCCCCCCCCCCCC
Q 017112 315 NTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 377 (377)
Q Consensus 315 Dtv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~~~~~~~c 377 (377)
|||.|+||+|++|||.|||||.|+||||+.+|...||.+.|.|.++.+...++.++|.+.+.|
T Consensus 493 ~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 493 DTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred ceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 999999999999999999999999999999999999999999999998888999999999999
No 5
>PLN02991 oxidoreductase
Probab=100.00 E-value=3.3e-66 Score=512.56 Aligned_cols=340 Identities=25% Similarity=0.381 Sum_probs=257.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEe
Q 017112 2 GLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILI 81 (377)
Q Consensus 2 ~~~p~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l 81 (377)
|..++.+|++||||+.. .++++|++||+|||||||+|+.+.++|+||||+|+|||+||++++|+.++.|.|
T Consensus 184 ~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i 254 (543)
T PLN02991 184 GGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDV 254 (543)
T ss_pred CCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEE
Confidence 34567899999999952 468999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChh--hHHhhhhhccCCC
Q 017112 82 APGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSE--FALNYNKKLRSLN 159 (377)
Q Consensus 82 ~~GqR~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~l~~l~ 159 (377)
++||||||||++++++|+||||+...... ......|||+|++.......+.+..|...... ........|.+..
T Consensus 255 ~~GQRydvlv~a~~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~ 330 (543)
T PLN02991 255 HVGQSYSVLITADQPAKDYYIVVSSRFTS----KILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASG 330 (543)
T ss_pred cCCcEEEEEEECCCCCCcEEEEEeeccCC----CCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCC
Confidence 99999999999999889999999864321 23457899999876432111112212111000 0001112233222
Q ss_pred CCCCCCC----CCcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccC-CCCCCCCC
Q 017112 160 SPKFPAD----VPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKAD-FPDKPPKP 234 (377)
Q Consensus 160 ~~~~p~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~-~~~~~p~~ 234 (377)
....|.. .....++.+.+....+. ..++..|++||++|..|.+++|.+.+..++|++..+ +++.++..
T Consensus 331 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~ 403 (543)
T PLN02991 331 PRPNPQGSYHYGKINITRTIRLANSAGN-------IEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNG 403 (543)
T ss_pred CCCCCCccccccccccceeEEEeecccc-------cCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCC
Confidence 1111111 00112222222221111 123567999999999998899888777788877654 44444321
Q ss_pred CCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 017112 235 FNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIER 314 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~r 314 (377)
.....+.++.++.|++|||+|+|.. ...||||||||+|+||++|.|.|++. ++..+|+.||++|
T Consensus 404 ------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rR 467 (543)
T PLN02991 404 ------------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWSAA-SRKVYNLNDAVSR 467 (543)
T ss_pred ------------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCCcc-cccccCCCCCCcc
Confidence 0112345778899999999999964 45899999999999999999999875 5567999999999
Q ss_pred ceeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCCCCCCCCCCCCCCCC
Q 017112 315 NTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 377 (377)
Q Consensus 315 Dtv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~~~~~~~c 377 (377)
||+.|+++||++|||++||||+|+|||||.+|+..||..++.|.++.+..+++.++|.+.+.|
T Consensus 468 DTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 468 CTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred cEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 999999999999999999999999999999999999999999999998888999999999999
No 6
>PLN02835 oxidoreductase
Probab=100.00 E-value=2.2e-65 Score=508.91 Aligned_cols=339 Identities=27% Similarity=0.402 Sum_probs=251.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEe
Q 017112 2 GLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILI 81 (377)
Q Consensus 2 ~~~p~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l 81 (377)
|..++.+|++||||+. .+.++|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|+.++.|.|
T Consensus 185 g~~~~~~d~~liNG~~----------~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i 254 (539)
T PLN02835 185 GKVLPFPDGVLINGQT----------QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDV 254 (539)
T ss_pred CCCCCCCceEEEcccc----------CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEE
Confidence 3446789999999996 568999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCC---ChhhHHhhhhhccCC
Q 017112 82 APGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASN---DSEFALNYNKKLRSL 158 (377)
Q Consensus 82 ~~GqR~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~l~~l 158 (377)
++||||||||++++.+|+|||++.....+ ......|+|+|++.........+..|..+ .......+...+.+.
T Consensus 255 ~~GqRydvlv~~~~~~g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~ 330 (539)
T PLN02835 255 HVGQSVAVLVTLNQSPKDYYIVASTRFTR----QILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTAS 330 (539)
T ss_pred CcCceEEEEEEcCCCCCcEEEEEEccccC----CCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCcc
Confidence 99999999999998789999998643222 23467899999875322111122222111 000000010111111
Q ss_pred CCCCCCCCC----CcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCC-CCCCCC
Q 017112 159 NSPKFPADV----PQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADF-PDKPPK 233 (377)
Q Consensus 159 ~~~~~p~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~-~~~~p~ 233 (377)
.....+... ....++++.+..... . ..++..|++||++|..|.+++|.+.+...++.++.+. +..++
T Consensus 331 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~- 402 (539)
T PLN02835 331 AARPNPQGSFHYGKITPTKTIVLANSAP-----L--INGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPS- 402 (539)
T ss_pred ccCCCCCccccccccCCCceEEEecccc-----c--cCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCC-
Confidence 111111100 011233333322111 0 1124679999999999888888776666666665432 11111
Q ss_pred CCCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCc
Q 017112 234 PFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIE 313 (377)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~ 313 (377)
....+.++.++.++.|++|+|+|+|.. ...||||||||+|+||++|.|.|++. .+..+|+.||++
T Consensus 403 -----------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~~~~~-~~~~~nl~nP~~ 467 (539)
T PLN02835 403 -----------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWTPA-KRSLYNLVDALT 467 (539)
T ss_pred -----------CCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCCCCcc-cccccCCCCCCc
Confidence 001233467789999999999999974 45899999999999999999988764 345679999999
Q ss_pred cceeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCCCCCCCCCCCCCCCC
Q 017112 314 RNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 377 (377)
Q Consensus 314 rDtv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~~~~~~~c 377 (377)
|||+.|+++||++|||++||||.|+|||||++|+..||+++|.|.++.+..+++.++|.++|.|
T Consensus 468 RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 468 RHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred cceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccc
Confidence 9999999999999999999999999999999999999999999999988888999999999999
No 7
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.1e-64 Score=504.49 Aligned_cols=348 Identities=28% Similarity=0.403 Sum_probs=254.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEe
Q 017112 2 GLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILI 81 (377)
Q Consensus 2 ~~~p~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l 81 (377)
|..++.+|++||||+.+..+ ....+.++|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|+.++.|.|
T Consensus 183 g~~~~~~d~~liNG~~~~~~---~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i 259 (552)
T PLN02354 183 GRTLGRPDGVLINGKSGKGD---GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDV 259 (552)
T ss_pred CCCCCCCCeEEEeCCcCCCC---CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEE
Confidence 33456789999999964322 123578999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCC--ChhhHHhhhhhccCCC
Q 017112 82 APGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASN--DSEFALNYNKKLRSLN 159 (377)
Q Consensus 82 ~~GqR~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~l~~l~ 159 (377)
++||||||||++++.+|+|||++.....+ .+....|+|+|++......+..+..+... ......++...+.+..
T Consensus 260 ~~GqRydVlv~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 335 (552)
T PLN02354 260 HVGQCFSVLVTANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASA 335 (552)
T ss_pred ccCceEEEEEECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccc
Confidence 99999999999998889999998742221 33567899999875432211122111100 0000111111222211
Q ss_pred CCCCCCCCC----cccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhccc-CcccccC-CCCCCCC
Q 017112 160 SPKFPADVP----QKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNL-KGVFKAD-FPDKPPK 233 (377)
Q Consensus 160 ~~~~p~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~-~~~~~~~-~~~~~p~ 233 (377)
....+.... ...++++.+..... . ..+...|++||++|..|.+|+|.+.+.++ .|.++.+ +++.+|.
T Consensus 336 ~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~ 408 (552)
T PLN02354 336 ARPNPQGSYHYGKINITRTIKLVNSAS-----K--VDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPA 408 (552)
T ss_pred cCCCCCCccccccccccceEEEecccc-----c--CCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCcc
Confidence 111111100 11233333333211 0 12356799999999999998887765544 3555433 3444443
Q ss_pred CCCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCc
Q 017112 234 PFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIE 313 (377)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~ 313 (377)
.++ ....+..++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. .+..+|+.||++
T Consensus 409 ~~~----------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G~G~~~~~-~~~~~nl~nP~r 474 (552)
T PLN02354 409 KIT----------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVEPGTWTPE-KRKNYNLLDAVS 474 (552)
T ss_pred ccC----------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeecCCCCCcc-ccccCCcCCCCc
Confidence 221 1223456788999999999999974 45899999999999999999999865 356799999999
Q ss_pred cceeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCCCCCCCCCCCCCCCC
Q 017112 314 RNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 377 (377)
Q Consensus 314 rDtv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~~~~~~~c 377 (377)
|||+.|+++||++|||++||||+|+|||||..|+..||...|.|.++.+..+++.++|.+.+.|
T Consensus 475 RDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 475 RHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred cceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999988887777777788999999
No 8
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=8.6e-64 Score=496.20 Aligned_cols=339 Identities=29% Similarity=0.435 Sum_probs=244.4
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeC
Q 017112 3 LPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIA 82 (377)
Q Consensus 3 ~~p~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~ 82 (377)
..++.+|++||||+.. ..++++|++||+|||||||+|+.+.++|+||||+|+|||+||.+++|+.+++|.|+
T Consensus 183 ~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~ 254 (545)
T PLN02168 183 HSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIH 254 (545)
T ss_pred CCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEc
Confidence 3456799999999952 14689999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCC-C---ceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhcc-C
Q 017112 83 PGQTTNVLVQANQKP-G---RYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLR-S 157 (377)
Q Consensus 83 ~GqR~dvlv~~~~~~-g---~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~-~ 157 (377)
+||||||||++++.+ | +|||++.....+ ......|+|+|++.......+.+..|..++.....++...++ .
T Consensus 255 ~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~ 330 (545)
T PLN02168 255 VGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMD 330 (545)
T ss_pred CCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhc
Confidence 999999999998643 4 899999864322 235678999998754322111222233322211111111111 1
Q ss_pred CCCCCCCCCCCcc--------cceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccC-CC
Q 017112 158 LNSPKFPADVPQK--------VDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKAD-FP 228 (377)
Q Consensus 158 l~~~~~p~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~-~~ 228 (377)
+.+ ..+...|.. .++++.+.... . ...+...|++||++|..|.++++.+.+..+++.+..+ ++
T Consensus 331 l~p-~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----~--~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~ 402 (545)
T PLN02168 331 LNV-GAARSNPQGSYHYGRINVTRTIILHNDV-----M--LSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFP 402 (545)
T ss_pred CCC-CCCCCCCcccccccccccceeEEecccc-----c--ccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCc
Confidence 111 011111111 22222222110 0 0123567999999999999988766655554443332 34
Q ss_pred CCCCCCCCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCC
Q 017112 229 DKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNL 308 (377)
Q Consensus 229 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~ 308 (377)
..+|.. ....++.++.++.|++|+|+|+|.. ...||||||||+||||++|.|.|++.. +..+|+
T Consensus 403 ~~p~~~------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~~~~~~-~~~~Nl 466 (545)
T PLN02168 403 VYPSNK------------TPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGAWSESK-KAGYNL 466 (545)
T ss_pred cCCCcC------------ccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCCCCccc-cccCCC
Confidence 443310 0112356788999999999999974 458999999999999999999998653 457999
Q ss_pred CCCCccceeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCC------CCCCCCCCCCCCCCC
Q 017112 309 VDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPG------PDQSVLPPPTDLPPC 377 (377)
Q Consensus 309 ~np~~rDtv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~------~~~~~~~~~~~~~~c 377 (377)
.||++|||+.|+++||++|||++||||+|+|||||.+|...||...++|+++.. +..++.++|.+.+.|
T Consensus 467 ~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 467 VDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred CCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccc
Confidence 999999999999999999999999999999999998888888888888764443 245677889999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=2.8e-63 Score=498.77 Aligned_cols=351 Identities=33% Similarity=0.553 Sum_probs=247.5
Q ss_pred CCCCeEEEcCCCCCCCCCC----------------C-CceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCC
Q 017112 6 NMSDAHTINGKPGPLFPCS----------------E-KHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDA 68 (377)
Q Consensus 6 ~~~d~~liNG~~~~~~~~~----------------~-~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG 68 (377)
..+|++||||+.. +.|. . ...++++|++||+|||||||+|+.+.++|+||||+|+|||+||
T Consensus 186 ~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG 263 (566)
T PLN02604 186 GEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADG 263 (566)
T ss_pred CCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCC
Confidence 4679999999852 4443 1 1345899999999999999999999999999999999999999
Q ss_pred CccCceEecEEEeCCCCEEEEEEEeCCCCC-ceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCC-CC-CCCCCCCCCCh
Q 017112 69 VYTKPFTTEAILIAPGQTTNVLVQANQKPG-RYFMAARPFNDAPIPVDNKTATGILQYKGIPNSL-LP-TLAQLPASNDS 145 (377)
Q Consensus 69 ~~v~P~~v~~l~l~~GqR~dvlv~~~~~~g-~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~-~~~~~p~~~~~ 145 (377)
++++|++++.|.|++||||||||++++.+| +||||+.....+. +....+|||+|++..... ++ ..+..+.+++.
T Consensus 264 ~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~ 340 (566)
T PLN02604 264 HYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDV 340 (566)
T ss_pred EecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcceeEEEEECCCCCCCCCCCCCCCCCccccc
Confidence 999999999999999999999999998665 8999987543321 235678999998643211 11 11111222221
Q ss_pred hhHHhhhhhccCCCCCCCCCCCCcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCccccc
Q 017112 146 EFALNYNKKLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKA 225 (377)
Q Consensus 146 ~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~ 225 (377)
.........+..+.. .+...+...++++.+...... ..+...|++|+++|..|.+++|.+.+....+.++.
T Consensus 341 ~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~-------~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~ 411 (566)
T PLN02604 341 EPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE-------VNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQ 411 (566)
T ss_pred chhhcchhccccccc--CcCCCCCCCCeEEEEeccccc-------cCCeEEEEECcccCCCCCCchhHhhhhcCCCcccC
Confidence 111000011111111 111122334555554332211 12246799999999988888887766655666542
Q ss_pred CCC-CCCC-CCCCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCC---CCCCCCeeecCCceEEEEecCCCCCCC
Q 017112 226 DFP-DKPP-KPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFVVGTGIGNFDPV 300 (377)
Q Consensus 226 ~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~---~~~~Hp~HlHg~~f~vl~~g~g~~~~~ 300 (377)
+.+ ...+ ..|+.... ......+.+..++.++.|++|+++|+|...+ ....||||||||+|+||++|.|.|+..
T Consensus 412 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~ 489 (566)
T PLN02604 412 TPPPEGYDFANYDIYAK--PNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMS 489 (566)
T ss_pred CCCCcccccccccccCC--ccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCcc
Confidence 211 0000 11111100 0001123345678999999999999997421 246799999999999999999999876
Q ss_pred CCCCCCCCCCCCccceeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCCCCCCCCCCCCCCCC
Q 017112 301 KYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 377 (377)
Q Consensus 301 ~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~~~~~~~c 377 (377)
.+...+|+.||++|||+.|++++|++|||++||||.|+|||||+||+..||+++|++. .+.+.++|.+++.|
T Consensus 490 ~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 490 SDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred ccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-----hhhccCCCCCcCcc
Confidence 6667899999999999999999999999999999999999999999999999999753 23566778899999
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=4.6e-63 Score=495.81 Aligned_cols=350 Identities=33% Similarity=0.548 Sum_probs=247.2
Q ss_pred CCCCeEEEcCCCCCCCCCCC-------------------CceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEe
Q 017112 6 NMSDAHTINGKPGPLFPCSE-------------------KHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEV 66 (377)
Q Consensus 6 ~~~d~~liNG~~~~~~~~~~-------------------~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~ 66 (377)
..+|++||||+.. +.|.. .....++|++|++|||||||+|+.+.++|+||+|+|+|||+
T Consensus 163 ~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~ 240 (541)
T TIGR03388 163 GEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEA 240 (541)
T ss_pred CCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEe
Confidence 4579999999852 34421 12346899999999999999999999999999999999999
Q ss_pred CCCccCceEecEEEeCCCCEEEEEEEeCCCC-CceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCC--CCCCCCCC
Q 017112 67 DAVYTKPFTTEAILIAPGQTTNVLVQANQKP-GRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPT--LAQLPASN 143 (377)
Q Consensus 67 DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~~-g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~--~~~~p~~~ 143 (377)
||++++|++++.|.|++||||||||++++.+ ++||||+.....+ .......|||+|++......+. .+..|.++
T Consensus 241 DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~ 317 (541)
T TIGR03388 241 DGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWD 317 (541)
T ss_pred CCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCCCCCCCCCCCcc
Confidence 9999999999999999999999999998865 5899998864432 1334678999998754322111 11223333
Q ss_pred ChhhHHhhhhhccCCCCCCCCCCCCcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCccc
Q 017112 144 DSEFALNYNKKLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVF 223 (377)
Q Consensus 144 ~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~ 223 (377)
+......+. +..+.....+ ..+...++++.+...... ..+...|++|+++|..|..++|.+.+..+.+.+
T Consensus 318 ~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~ 387 (541)
T TIGR03388 318 DFDRSKAFS--LAIKAAMGSP-KPPETSDRRIVLLNTQNK-------INGYTKWAINNVSLTLPHTPYLGSLKYNLLNAF 387 (541)
T ss_pred ccchhhccc--hhhhccccCC-CCCCCCCcEEEEeccCcc-------cCceEEEEECcccCCCCCccHHHHHhhcCCccc
Confidence 221111111 1111110011 122345666554332110 122456999999999888888777665544443
Q ss_pred ccCCC-CCCCCCCCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCC---CCCCCCeeecCCceEEEEecCCCCCC
Q 017112 224 KADFP-DKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFVVGTGIGNFDP 299 (377)
Q Consensus 224 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~---~~~~Hp~HlHg~~f~vl~~g~g~~~~ 299 (377)
..+.+ ...+..|+.. ........+.++.++.++.|++|+++|+|...+ ....||||||||+||||++|.|.|+.
T Consensus 388 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~ 465 (541)
T TIGR03388 388 DQKPPPENYPRDYDIF--KPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRP 465 (541)
T ss_pred cCCCCccccccccccc--CCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCc
Confidence 32111 1111112111 111112234456788999999999999996422 24579999999999999999999986
Q ss_pred CCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCCCCCCCCCCCCCCCC
Q 017112 300 VKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 377 (377)
Q Consensus 300 ~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~~~~~~~c 377 (377)
..+...+|+.||++|||+.|++++|++|||++||||.|+|||||+||+..||+++|.+. .++++++|..++.|
T Consensus 466 ~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~~~~~~P~~~~~C 538 (541)
T TIGR03388 466 GVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VEKVGKLPKEALGC 538 (541)
T ss_pred ccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----ccccCCCCccccCC
Confidence 55556799999999999999999999999999999999999999999999999999753 24456678889999
No 11
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.3e-62 Score=493.09 Aligned_cols=349 Identities=33% Similarity=0.535 Sum_probs=242.6
Q ss_pred CCCCeEEEcCCCCCCCCCCC--------------------CceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEE
Q 017112 6 NMSDAHTINGKPGPLFPCSE--------------------KHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVE 65 (377)
Q Consensus 6 ~~~d~~liNG~~~~~~~~~~--------------------~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa 65 (377)
..+|++||||+.. +.|.. ....+++|++||+|||||||+|+.+.++|+||||+|+|||
T Consensus 185 ~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa 262 (574)
T PLN02191 185 GEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE 262 (574)
T ss_pred CCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE
Confidence 5689999999853 34421 1234799999999999999999999999999999999999
Q ss_pred eCCCccCceEecEEEeCCCCEEEEEEEeCCCC-CceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCC--CCCCCCC
Q 017112 66 VDAVYTKPFTTEAILIAPGQTTNVLVQANQKP-GRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPT--LAQLPAS 142 (377)
Q Consensus 66 ~DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~~-g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~--~~~~p~~ 142 (377)
+||++++|+++++|.|++||||||||++++.+ ++||||+.....+. ......|+|+|.+......+. .+..|.+
T Consensus 263 ~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~ 339 (574)
T PLN02191 263 ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQALTILNYVTAPASKLPSSPPPVTPRW 339 (574)
T ss_pred cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCceEEEEECCCCCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999865 58999997543321 223456999998654332111 1112223
Q ss_pred CChhhHHhhhhhccCCCCCCCCCCCC-cccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCc
Q 017112 143 NDSEFALNYNKKLRSLNSPKFPADVP-QKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKG 221 (377)
Q Consensus 143 ~~~~~~~~~~~~l~~l~~~~~p~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~ 221 (377)
++......+. ...+.....+ ..| ...++.+.+..... ..+...|++||++|..|.+++|.+.+....+
T Consensus 340 ~~~~~~~~~~--~~~~~~~~~~-~~p~~~~~~~~~~~~~~~--------~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~ 408 (574)
T PLN02191 340 DDFERSKNFS--KKIFSAMGSP-SPPKKYRKRLILLNTQNL--------IDGYTKWAINNVSLVTPATPYLGSVKYNLKL 408 (574)
T ss_pred cccchhhccc--ccccccccCC-CCCCcccceEEEecccce--------eCCeEEEEECcccCcCCCcchHHHHhhccCc
Confidence 2221111111 1111111111 111 12344443322110 1224569999999998988877666555555
Q ss_pred ccccCCCCCC-CCCCCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCC---CCCCCCeeecCCceEEEEecCCCC
Q 017112 222 VFKADFPDKP-PKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFVVGTGIGNF 297 (377)
Q Consensus 222 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~---~~~~Hp~HlHg~~f~vl~~g~g~~ 297 (377)
.+..+.+... +..|+..+. ......+.+..++.++.|++|+|+|+|.... ....||||||||+||||++|.|.|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~ 486 (574)
T PLN02191 409 GFNRKSPPRSYRMDYDIMNP--PPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKF 486 (574)
T ss_pred ccccCCCcccccccccccCC--CccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCC
Confidence 4443333221 112221111 0000123355678999999999999996421 256899999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCCCCCCCCCCCCCCCCC
Q 017112 298 DPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 377 (377)
Q Consensus 298 ~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~~~~~~~c 377 (377)
++......+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||.++|.... +.+.++|..++.|
T Consensus 487 ~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~-----~~~~~~p~~~~~C 561 (574)
T PLN02191 487 KPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEGL-----NRIGKIPDEALGC 561 (574)
T ss_pred CcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecCh-----hhccCCCcchhhh
Confidence 87544457899999999999999999999999999999999999999999999999996422 2333456678888
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=5.7e-59 Score=465.04 Aligned_cols=332 Identities=28% Similarity=0.449 Sum_probs=233.1
Q ss_pred CCCCeEEEcCCCCCCCCC----C---CCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCce-EEEEEeCCCccCceEec
Q 017112 6 NMSDAHTINGKPGPLFPC----S---EKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHN-FTVVEVDAVYTKPFTTE 77 (377)
Q Consensus 6 ~~~d~~liNG~~~~~~~~----~---~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~-~~VIa~DG~~v~P~~v~ 77 (377)
..+|++||||+.+... | + .+..++++|++||+|||||||+|+.+.++|+||||+ |+|||+||++++|++++
T Consensus 169 ~~~d~~liNG~~~~~~-~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~ 247 (538)
T TIGR03390 169 GETEAVLLNGKSGNKS-FYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKID 247 (538)
T ss_pred CCCceEEECCcccccc-ccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeC
Confidence 4579999999964321 1 1 123578999999999999999999999999999999 99999999999999999
Q ss_pred EEEeCCCCEEEEEEEeCCC-------CCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCh-hhHH
Q 017112 78 AILIAPGQTTNVLVQANQK-------PGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDS-EFAL 149 (377)
Q Consensus 78 ~l~l~~GqR~dvlv~~~~~-------~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~-~~~~ 149 (377)
.|.|++||||||||++++. +++||||+.....+ +.....|+|+|.+......+..+..+..... ....
T Consensus 248 ~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (538)
T TIGR03390 248 HLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYD 323 (538)
T ss_pred eEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchh
Confidence 9999999999999999874 48999999764322 2345789999976543322211112211110 0000
Q ss_pred hhhhhccCCCCCCCCCC-CCcccceeEEEEeccCCCCCCcccCCceeeeeecceeeec--CchhhhhhhhcccCcccccC
Q 017112 150 NYNKKLRSLNSPKFPAD-VPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVM--PQTALLQAHYFNLKGVFKAD 226 (377)
Q Consensus 150 ~~~~~l~~l~~~~~p~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~--p~~~l~~~~~~~~~~~~~~~ 226 (377)
.....|.++.....+.. .+..+++++.+.+++.... ..+...|++||++|.. |.+|+|...+.+.
T Consensus 324 ~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~-----~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~------- 391 (538)
T TIGR03390 324 WLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP-----LNGRVAWLQNGLSWTESVRQTPYLVDIYENG------- 391 (538)
T ss_pred hhheeeEecCccccCCCCCCCcCceEEEEEccccccc-----cCCeEEEEECCcccCCCCCCCchHHHHhcCC-------
Confidence 00113444432211111 1234577777766643210 1235679999999985 6677765543221
Q ss_pred CCCCCCCCCCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCC-----CCCCCCeeecCCceEEEEecCCCCCCCC
Q 017112 227 FPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL-----TVESHPFHLHGYNFFVVGTGIGNFDPVK 301 (377)
Q Consensus 227 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~-----~~~~Hp~HlHg~~f~vl~~g~g~~~~~~ 301 (377)
.+..++ ++ .. ........+..++.++.|++|+|+|+|.... ....||||||||+|+||++|.|.|++..
T Consensus 392 ~~~~~~--~~--~~--~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~ 465 (538)
T TIGR03390 392 LPATPN--YT--AA--LANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATA 465 (538)
T ss_pred CCcCCC--cc--cc--cccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCcc
Confidence 011110 11 00 0000112234567889999999999996421 2468999999999999999999998755
Q ss_pred CCCCCCCCCCCccceeeeC----------CCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCC
Q 017112 302 YPANYNLVDPIERNTAAVP----------TGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDG 360 (377)
Q Consensus 302 ~~~~~~~~np~~rDtv~v~----------~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 360 (377)
....+++.||++|||+.|+ +++|++|||++||||.|+|||||.||+..||+++|.|.+.
T Consensus 466 ~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~ 534 (538)
T TIGR03390 466 NEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDA 534 (538)
T ss_pred ChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCCh
Confidence 4456889999999999996 7899999999999999999999999999999999998654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.6e-45 Score=368.20 Aligned_cols=260 Identities=24% Similarity=0.366 Sum_probs=180.3
Q ss_pred eEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEE
Q 017112 10 AHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNV 89 (377)
Q Consensus 10 ~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dv 89 (377)
.+||||+. ....+++.+++|++|||||||+|+.+.|+|+|+||+|+|||+||++++|+.++.|.|++||||||
T Consensus 248 ~~LiNG~~-------~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDV 320 (587)
T TIGR01480 248 TYLMNGTT-------PAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDV 320 (587)
T ss_pred eEEEcCcc-------CCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEE
Confidence 47899985 22356799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHH------------hh------
Q 017112 90 LVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFAL------------NY------ 151 (377)
Q Consensus 90 lv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~------------~~------ 151 (377)
||++++ .|.|+|++..... .....++|.+........+..+..|......... ..
T Consensus 321 lV~~~~-~g~~~i~a~~~~~------~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 393 (587)
T TIGR01480 321 IVEPTG-DDAFTIFAQDSDR------TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGM 393 (587)
T ss_pred EEecCC-CceEEEEEEecCC------CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCccccc
Confidence 999874 5799999876432 2246677877643211111111101000000000 00
Q ss_pred --h------------------------------------------------------------hhccCCCCCCCCCCCCc
Q 017112 152 --N------------------------------------------------------------KKLRSLNSPKFPADVPQ 169 (377)
Q Consensus 152 --~------------------------------------------------------------~~l~~l~~~~~p~~~p~ 169 (377)
. .+|+.+.+. . .+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~-~---~~~ 469 (587)
T TIGR01480 394 DMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPP-P---DGR 469 (587)
T ss_pred CccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccc-c---CcC
Confidence 0 000000000 0 000
Q ss_pred ccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCCCCCCCCCCccCcC
Q 017112 170 KVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTS 249 (377)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 249 (377)
..++++.+.+.. +..++.|+|||+.|.
T Consensus 470 ~p~r~~~~~L~g---------~m~~~~wtiNG~~~~-------------------------------------------- 496 (587)
T TIGR01480 470 APGREIELHLTG---------NMERFAWSFDGEAFG-------------------------------------------- 496 (587)
T ss_pred CCCceEEEEEcC---------CCceeEEEECCccCC--------------------------------------------
Confidence 112222222211 112344666665541
Q ss_pred CceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEE
Q 017112 250 RATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRF 329 (377)
Q Consensus 250 ~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~ 329 (377)
....+.++.|++|+|+|.|.+ .+.||||||||.|+++..+ |. .+.++||+.|+|++++.++|
T Consensus 497 -~~~pl~v~~Gervri~l~N~t---~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f 558 (587)
T TIGR01480 497 -LKTPLRFNYGERLRVVLVNDT---MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRV 558 (587)
T ss_pred -CCCceEecCCCEEEEEEECCC---CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEE
Confidence 112467999999999999975 5699999999999998643 21 13578999999999999999
Q ss_pred EcCCceeeEeeechHHHHhccceeEEEEe
Q 017112 330 RADNPGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 330 ~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
++||||.|+||||++.|++.|||+.|.|.
T Consensus 559 ~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 559 TADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred ECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 99999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=4.6e-45 Score=362.23 Aligned_cols=267 Identities=19% Similarity=0.234 Sum_probs=173.9
Q ss_pred CCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEE-cCceEEEEEeCCCcc-CceEecEEEeCC
Q 017112 6 NMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAI-AGHNFTVVEVDAVYT-KPFTTEAILIAP 83 (377)
Q Consensus 6 ~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~i-dgh~~~VIa~DG~~v-~P~~v~~l~l~~ 83 (377)
..+|.+||||+. .|.+.++ +++|||||||+|+++.|+|++ |+|+|+|||+||+++ +|+.+++|.|+|
T Consensus 210 ~~gd~~lVNG~~----------~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lap 278 (523)
T PRK10965 210 WFGDTLLTNGAI----------YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILM 278 (523)
T ss_pred ccCCeEEECCcc----------cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECc
Confidence 368999999996 5777775 579999999999999999998 899999999999997 899999999999
Q ss_pred CCEEEEEEEeCCCCCceeEEeeccCCCCCCC-CCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhccCCCCCC
Q 017112 84 GQTTNVLVQANQKPGRYFMAARPFNDAPIPV-DNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPK 162 (377)
Q Consensus 84 GqR~dvlv~~~~~~g~y~l~~~~~~~~~~~~-~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~ 162 (377)
||||||+|++++ .++|++.+.......... .......++++......... ..|. .|..+.+.
T Consensus 279 GeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~P~------------~l~~~~~~- 341 (523)
T PRK10965 279 GERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASG---TLPD------------SLASLPAL- 341 (523)
T ss_pred cceEEEEEEcCC-CceEEEEEecccCcccccccCCCceeEEEEeccCcCCCC---cCCh------------hhccCCCC-
Confidence 999999999986 578998876443211000 01112345555432111110 1110 11111110
Q ss_pred CCCCCCcccceeEEEEecc--C---C----CCCC--c------------ccCC------------ce-----eeeeecce
Q 017112 163 FPADVPQKVDRKLFYTIGF--G---K----DSCP--T------------CVNG------------TR-----LLATLNNI 202 (377)
Q Consensus 163 ~p~~~p~~~~~~~~~~~~~--~---~----~~~~--~------------~~~~------------~~-----~~~~iN~~ 202 (377)
+...+ ...+++.+.+.. . + ..+. . ...| .. ..|+|||+
T Consensus 342 -~~~~~-~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~ 419 (523)
T PRK10965 342 -PSLEG-LTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGK 419 (523)
T ss_pred -Ccccc-cceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCe
Confidence 00000 012233222210 0 0 0000 0 0000 00 01245555
Q ss_pred eeecCchhhhhhhhcccCcccccCCCCCCCCCCCCCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeee
Q 017112 203 SFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHL 282 (377)
Q Consensus 203 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~Hl 282 (377)
+|.. ....+.++.|++++|+|+|.+. .+.|||||
T Consensus 420 ~~~~--------------------------------------------~~~~~~~~~G~~e~w~i~N~~~--~~~Hp~Hl 453 (523)
T PRK10965 420 AFDM--------------------------------------------NKPMFAAKKGQYERWVISGVGD--MMLHPFHI 453 (523)
T ss_pred ECCC--------------------------------------------CCcceecCCCCEEEEEEEeCCC--CCccCeEE
Confidence 5411 1234678999999999999752 25799999
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC----CceeeEeeechHHHHhccceeEEEEe
Q 017112 283 HGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD----NPGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 283 Hg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d----~pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
||++|||++++... .....+.|||||.|++ +.++|+++++ ++|.|||||||++|||.|||++|.|.
T Consensus 454 Hg~~F~Vl~~~g~~---------~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 454 HGTQFRILSENGKP---------PAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred eCcEEEEEEecCCC---------CCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 99999999996321 1123467999999987 6677766654 57799999999999999999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=4.1e-45 Score=359.47 Aligned_cols=250 Identities=17% Similarity=0.168 Sum_probs=171.3
Q ss_pred CCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEE-cCceEEEEEeCCCcc-CceEecEEEeCC
Q 017112 6 NMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAI-AGHNFTVVEVDAVYT-KPFTTEAILIAP 83 (377)
Q Consensus 6 ~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~i-dgh~~~VIa~DG~~v-~P~~v~~l~l~~ 83 (377)
..+|.+||||+. .++++|++| +|||||||+|+.+.|+|+| |+|+|+|||+||+++ +|+.+++|.|+|
T Consensus 207 ~~gd~~lvNG~~----------~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~p 275 (471)
T PRK10883 207 FVGDTLLVNGVQ----------SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAP 275 (471)
T ss_pred ccCCeeEECCcc----------CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECC
Confidence 468999999996 578999985 8999999999999999999 899999999998777 999999999999
Q ss_pred CCEEEEEEEeCCCCCceeEEeeccCCCC----CCCCCc---ceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhcc
Q 017112 84 GQTTNVLVQANQKPGRYFMAARPFNDAP----IPVDNK---TATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLR 156 (377)
Q Consensus 84 GqR~dvlv~~~~~~g~y~l~~~~~~~~~----~~~~~~---~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 156 (377)
||||||+|++++ .+.+.+.+....... ...... ....+++......... .....| ..+.
T Consensus 276 GeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p------------~~l~ 341 (471)
T PRK10883 276 GERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPL-VTDNLP------------MRLL 341 (471)
T ss_pred CCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccccC-CCCcCC------------hhhc
Confidence 999999999976 356767653221110 000000 0122333332110000 000001 0011
Q ss_pred CCCCCCCCCCCCcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCC
Q 017112 157 SLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFN 236 (377)
Q Consensus 157 ~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (377)
. ... .+....+++.+.++.. .|.|||++|.+.
T Consensus 342 ~---~~~---~~~~~~~~~~~~l~~~-------------~~~INg~~~~~~----------------------------- 373 (471)
T PRK10883 342 P---DEI---MEGSPIRSREISLGDD-------------LPGINGALWDMN----------------------------- 373 (471)
T ss_pred C---CCC---CCCCCcceEEEEecCC-------------cCccCCcccCCC-----------------------------
Confidence 1 000 0011233333433211 256888887211
Q ss_pred CCCCCCCCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccce
Q 017112 237 YTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNT 316 (377)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDt 316 (377)
...+.++.|++++|++.|. +.|||||||+.|||++++.... ...+..||||
T Consensus 374 ---------------~~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~~---------~~~~~gwkDT 424 (471)
T PRK10883 374 ---------------RIDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAMP---------FPEDRGWKDT 424 (471)
T ss_pred ---------------cceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCCC---------CccccCcCcE
Confidence 1135688999999999884 4799999999999999963211 1122469999
Q ss_pred eeeCCCCEEEEEEEcCCce----eeEeeechHHHHhccceeEEEEeC
Q 017112 317 AAVPTGGWTAIRFRADNPG----VWFMHCHLELHTGWGLKTAFAVED 359 (377)
Q Consensus 317 v~v~~~~~~~i~~~~d~pG----~w~~HCHi~~H~~~Gm~~~~~v~~ 359 (377)
|.|+ +.++|+++++++| .|||||||++|||.|||++|.|.+
T Consensus 425 V~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 425 VWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred EEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 9995 4699999999987 899999999999999999999964
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.9e-36 Score=297.78 Aligned_cols=260 Identities=27% Similarity=0.337 Sum_probs=170.2
Q ss_pred CCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCC
Q 017112 6 NMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQ 85 (377)
Q Consensus 6 ~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~Gq 85 (377)
..+|..+|||+. .+.+.++ +.+|||||+|+++.+.+.+.+.+++|+||++||.+++|+.++.+.|+|||
T Consensus 187 ~~g~~~~vnG~~----------~p~~~~~-~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~e 255 (451)
T COG2132 187 FPGDTLLVNGAI----------LPFKAVP-GGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGE 255 (451)
T ss_pred CCCCeEEECCCc----------cceeecC-CCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcc
Confidence 458889999964 3445555 45699999999999999999999999999999999988999999999999
Q ss_pred EEEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCC---CCCCCChhhHHhhhhhccCCCCCC
Q 017112 86 TTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQ---LPASNDSEFALNYNKKLRSLNSPK 162 (377)
Q Consensus 86 R~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~l~~l~~~~ 162 (377)
||||+|++.+ .+.+.+.+.. .... ....+..........+...... .+..+. .. .....+....
T Consensus 256 r~~v~v~~~~-~~~~~l~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~---~~~~~~~~~~ 322 (451)
T COG2132 256 RYEVLVDMND-GGAVTLTALG-EDMP-----DTLKGFRAPNPILTPSYPVLNGRVGAPTGDM---AD---HAPVGLLVTI 322 (451)
T ss_pred eEEEEEEcCC-CCeEEEEecc-ccCC-----ceeeeeeccccccccccccccccccCCCcch---hh---ccccccchhh
Confidence 9999999986 5677777665 1110 0111222111110000000000 000000 00 0000000000
Q ss_pred CCCCCCcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCCCCCCCC
Q 017112 163 FPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPL 242 (377)
Q Consensus 163 ~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 242 (377)
+....+ ..+..+.+.. .-....|.+|++.|..
T Consensus 323 ~~~~~~-~~~~~~~l~~-----------~~~~~~~~~n~~~~~~------------------------------------ 354 (451)
T COG2132 323 LVEPGP-NRDTDFHLIG-----------GIGGYVWAINGKAFDD------------------------------------ 354 (451)
T ss_pred cCCCcc-cccccchhhc-----------ccccccccccCccCCC------------------------------------
Confidence 000000 0000000000 0011225555554410
Q ss_pred CCccCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCC
Q 017112 243 TASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTG 322 (377)
Q Consensus 243 ~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~ 322 (377)
....+.++.|++++|+|.|.. .+.|||||||+.|+|++.+ .......+.||||+.+.++
T Consensus 355 --------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDTv~v~~~ 413 (451)
T COG2132 355 --------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDTVLVAPG 413 (451)
T ss_pred --------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCcccccCccceEEEeCCC
Confidence 123578899999999999975 4799999999999999986 1122345789999999999
Q ss_pred CEEEEEEEcCCceeeEeeechHHHHhccceeEEEEe
Q 017112 323 GWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 323 ~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
+.++++|.+++||.|+||||+++|++.|||..+.|.
T Consensus 414 ~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 414 ERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred eEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 999999999999999999999999999999999875
No 17
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=9.7e-31 Score=217.72 Aligned_cols=108 Identities=42% Similarity=0.768 Sum_probs=94.6
Q ss_pred cCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEE
Q 017112 248 TSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAI 327 (377)
Q Consensus 248 ~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i 327 (377)
...+...+.++.|++|+|+|+|.+ ...|||||||+.|+|++++.+.+... ....+++.+|.||||+.|+++++++|
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEE
Confidence 345567899999999999999975 45999999999999999987655433 34567889999999999999999999
Q ss_pred EEEcCCceeeEeeechHHHHhccceeEEEEeC
Q 017112 328 RFRADNPGVWFMHCHLELHTGWGLKTAFAVED 359 (377)
Q Consensus 328 ~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~ 359 (377)
||++++||.|+||||+++|++.|||++|+|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999999864
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=1.7e-28 Score=208.69 Aligned_cols=121 Identities=38% Similarity=0.660 Sum_probs=102.3
Q ss_pred CCCCCeEEEcCCCCCCCCCC-----CCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEE
Q 017112 5 PNMSDAHTINGKPGPLFPCS-----EKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAI 79 (377)
Q Consensus 5 p~~~d~~liNG~~~~~~~~~-----~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l 79 (377)
|+.+|.+||||+.. +.|+ ....+.+.|++|++|||||||+|+.+.+.|+|+||+|+|||+||.+++|++++.|
T Consensus 33 ~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l 110 (159)
T PF00394_consen 33 PPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTL 110 (159)
T ss_dssp TSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBE
T ss_pred CcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccccccccceE
Confidence 78999999999974 4554 2457899999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcC
Q 017112 80 LIAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKG 127 (377)
Q Consensus 80 ~l~~GqR~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~ 127 (377)
.|++||||||+|++++++|+|||++................|+|+|++
T Consensus 111 ~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 111 VLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp EE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred EeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 999999999999999878999999962222111223567899999985
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.71 E-value=2.8e-17 Score=154.09 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=92.2
Q ss_pred CCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCce--EecEEEeCC
Q 017112 6 NMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPF--TTEAILIAP 83 (377)
Q Consensus 6 ~~~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~--~v~~l~l~~ 83 (377)
..++.++|||+.+.. .+.+.+++|+++||||||++..+.+.|++.+|.+++|+.||.++.|. .++.+.|+|
T Consensus 186 ~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~P 258 (311)
T TIGR02376 186 LTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPG 258 (311)
T ss_pred CCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECC
Confidence 457899999995321 24578999999999999999999999999999999999999999754 389999999
Q ss_pred CCEEEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCC
Q 017112 84 GQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGI 128 (377)
Q Consensus 84 GqR~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~ 128 (377)
|||+||+|++++ +|.|++++..+... .+....+++.|++.
T Consensus 259 G~R~dv~v~~~~-pG~y~~~~~~~~~~----~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 259 GSAAAALYTFEQ-PGVYAYVDHNLIEA----FEKGAAAQVKVEGA 298 (311)
T ss_pred CceEEEEEEeCC-CeEEEEECcHHHHH----HhCCCEEEEEECCC
Confidence 999999999997 79999998765431 12236789999754
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.63 E-value=1.6e-13 Score=128.72 Aligned_cols=247 Identities=19% Similarity=0.168 Sum_probs=146.5
Q ss_pred CCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCC-CeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCE
Q 017112 8 SDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALN-DELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQT 86 (377)
Q Consensus 8 ~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~-~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR 86 (377)
-+.+++||+.. .|.|++++|+++++++.|.... ....+.+.++. +.||... ...|.|||+
T Consensus 47 ~~~~~~nG~~p---------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSVP---------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCccc---------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 34667788741 4899999999999999998632 34556666653 4677531 123899999
Q ss_pred EEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhccCCCCCCCCCC
Q 017112 87 TNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPAD 166 (377)
Q Consensus 87 ~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~ 166 (377)
+..-+++++ +|.||............ ......+.|....... . +..+. + +.-.++.... ...
T Consensus 108 ~ty~F~~~~-~Gty~YH~H~~~~~~~q-~~~Gl~G~liV~~~~~--~------~~~d~-e----~~l~l~d~~~---~~~ 169 (311)
T TIGR02376 108 ATLRFKATR-PGAFVYHCAPPGMVPWH-VVSGMNGAIMVLPREG--L------PEYDK-E----YYIGESDLYT---PKD 169 (311)
T ss_pred EEEEEEcCC-CEEEEEEcCCCCchhHH-hhcCcceEEEeeccCC--C------cCcce-e----EEEeeeeEec---ccc
Confidence 999999875 79999987642110000 0011233344432211 0 11111 0 0000000000 000
Q ss_pred CCcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCCCCCCCCCCcc
Q 017112 167 VPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASL 246 (377)
Q Consensus 167 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 246 (377)
......+.... ... ..+..-.+.+||+....
T Consensus 170 --~~~~~~~~~~~--~~~-----~~~~~~~~~iNG~~~~~---------------------------------------- 200 (311)
T TIGR02376 170 --EGEGGAYEDDV--AAM-----RTLTPTHVVFNGAVGAL---------------------------------------- 200 (311)
T ss_pred --ccccccccchH--HHH-----hcCCCCEEEECCccCCC----------------------------------------
Confidence 00000000000 000 00000124556654310
Q ss_pred CcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCC-ccceeeeCCCCEE
Q 017112 247 GTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPI-ERNTAAVPTGGWT 325 (377)
Q Consensus 247 ~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~-~rDtv~v~~~~~~ 325 (377)
.+.+.++.|++++|+|.|.+. ...+.||++|++|.++... |.+- ..+. ..|++.|.||+..
T Consensus 201 -----~~~~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~D-G~~~----------~~~~~~~~~~~i~PG~R~ 262 (311)
T TIGR02376 201 -----TGDNALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWVT-GKFA----------NPPNRDVETWFIPGGSAA 262 (311)
T ss_pred -----CCCcccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEEC-Cccc----------CCCCCCcceEEECCCceE
Confidence 012467889999999999862 4568999999999999884 3211 1122 3689999999999
Q ss_pred EEEEEcCCceeeEeeechHHHH-hccceeEEEEe
Q 017112 326 AIRFRADNPGVWFMHCHLELHT-GWGLKTAFAVE 358 (377)
Q Consensus 326 ~i~~~~d~pG~w~~HCHi~~H~-~~Gm~~~~~v~ 358 (377)
.|.+++++||.|++|||...|. ..||++.|.|+
T Consensus 263 dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 263 AALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred EEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence 9999999999999999999987 77999999875
No 21
>PLN02604 oxidoreductase
Probab=99.21 E-value=6.2e-11 Score=120.12 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=71.7
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.++++.|+++++.+.|.. ....|++|+||... .+. ..+++ ........|+||+..+++|+++
T Consensus 55 P~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~~--~~~--~~~DG-----------~~~~tq~~i~pg~s~~y~f~~~ 117 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSL--LTENVAIHWHGIRQ--IGT--PWFDG-----------TEGVTQCPILPGETFTYEFVVD 117 (566)
T ss_pred CcEEEECCCEEEEEEEeCC--CCCCCCEEeCCCCC--CCC--ccccC-----------CCccccCccCCCCeEEEEEEcC
Confidence 4688999999999999974 24579999999942 111 00111 0112345789999999999999
Q ss_pred CceeeEeeechHHHHhccceeEEEEeCCC
Q 017112 333 NPGVWFMHCHLELHTGWGLKTAFAVEDGP 361 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 361 (377)
++|.|.||||...|.+.||++.|.|++..
T Consensus 118 ~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 118 RPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred CCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 99999999999999999999999998654
No 22
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.07 E-value=5.2e-10 Score=89.69 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=68.6
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
.+.++++.|+.|++.+.|.. ...+.+|+||...---...+|. . .. -.-.|.||+..+.+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~~~~~DG~----~----------~~-~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPPSPWMDGV----P----------GV-TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTTGGGGSGG----T----------TT-SGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeeeeeecCCc----c----------cc-cceeEEeecceeeeEee
Confidence 35789999999999999975 5679999999653110000110 0 00 01258899999999999
Q ss_pred CC-ceeeEeeechHHHHhccceeEEEEeCC
Q 017112 332 DN-PGVWFMHCHLELHTGWGLKTAFAVEDG 360 (377)
Q Consensus 332 d~-pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 360 (377)
+. +|.|.||||...|..+||.+.|+|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 98 999999999999988999999999864
No 23
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.97 E-value=1.1e-07 Score=96.23 Aligned_cols=238 Identities=19% Similarity=0.194 Sum_probs=135.6
Q ss_pred CeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEE---eCCCccCceEecEEEeCCCC
Q 017112 9 DAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVE---VDAVYTKPFTTEAILIAPGQ 85 (377)
Q Consensus 9 d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa---~DG~~v~P~~v~~l~l~~Gq 85 (377)
..+++||+.. .|.|+++.|.+.++++.|--.. ...+...| +.+.. .||.+ .+.+..|.||+
T Consensus 23 ~~~~~NG~~P---------GP~i~~~~GD~v~v~v~N~l~~-~tsiHwHG--l~q~~~~~~DGv~----~vTq~pI~PG~ 86 (539)
T TIGR03389 23 SILTVNGKFP---------GPTLYAREGDTVIVNVTNNVQY-NVTIHWHG--VRQLRNGWADGPA----YITQCPIQPGQ 86 (539)
T ss_pred EEEEECCccc---------CCEEEEEcCCEEEEEEEeCCCC-CeeEecCC--CCCCCCCCCCCCc----ccccCCcCCCC
Confidence 4688999862 5899999999999999999764 23344444 33332 57764 44555789999
Q ss_pred EEEEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhccCCCCCCCCC
Q 017112 86 TTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPA 165 (377)
Q Consensus 86 R~dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~ 165 (377)
.+..-+++.+..|.||-.+...... . ...+-|...+......+ .+..+. +... .+.+.. -.
T Consensus 87 s~~Y~f~~~~~~GT~WYHsH~~~~~----~--Gl~G~lIV~~~~~~~~~----~~~~d~-e~~l----~l~Dw~----~~ 147 (539)
T TIGR03389 87 SYVYNFTITGQRGTLWWHAHISWLR----A--TVYGAIVILPKPGVPYP----FPKPDR-EVPI----ILGEWW----NA 147 (539)
T ss_pred eEEEEEEecCCCeeEEEecCchhhh----c--cceEEEEEcCCCCCCCC----CCCCCc-eEEE----Eecccc----cC
Confidence 9998888854579999877642111 1 12233333322111110 000000 0000 000000 00
Q ss_pred CCCcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCCCCCCCCCCc
Q 017112 166 DVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTAS 245 (377)
Q Consensus 166 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 245 (377)
........ ....+. . ....-.+.|||+..... .
T Consensus 148 ~~~~~~~~--~~~~~~--~------~~~~d~~liNG~~~~~~-------------------------------------~ 180 (539)
T TIGR03389 148 DVEAVINQ--ANQTGG--A------PNVSDAYTINGHPGPLY-------------------------------------N 180 (539)
T ss_pred CHHHHHHH--HHhcCC--C------CCccceEEECCCcCCCC-------------------------------------C
Confidence 00000000 000000 0 00001145666532100 0
Q ss_pred cCcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEE
Q 017112 246 LGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWT 325 (377)
Q Consensus 246 ~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~ 325 (377)
+ .......+.++.|++++|+|+|.+. ...+.|||+||.|+|++.... +..|...|++.|.+|++.
T Consensus 181 ~-~~~~~~~i~v~~G~~~RlRlINa~~--~~~~~~~idgH~~~VIa~DG~------------~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 181 C-SSKDTFKLTVEPGKTYLLRIINAAL--NDELFFAIANHTLTVVEVDAT------------YTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred C-CCCCceEEEECCCCEEEEEEEeccC--CceEEEEECCCeEEEEEeCCc------------ccCceEeCeEEecCCCEE
Confidence 0 0011246889999999999999873 456889999999999998521 124667899999999999
Q ss_pred EEEEEcCC-ceeeEeeech
Q 017112 326 AIRFRADN-PGVWFMHCHL 343 (377)
Q Consensus 326 ~i~~~~d~-pG~w~~HCHi 343 (377)
.|.+++++ +|.|.++-+.
T Consensus 246 dVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARP 264 (539)
T ss_pred EEEEECCCCCceEEEEEec
Confidence 99999986 8988876543
No 24
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.81 E-value=1.8e-08 Score=101.91 Aligned_cols=92 Identities=23% Similarity=0.286 Sum_probs=70.7
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.++++.|+.+++.+.|.. ....+.+|+||... .+....|+. | .-..-.|+||+..+.+|+++
T Consensus 32 P~i~~~~Gd~v~v~v~N~l--~~~~t~iHwHGl~~----~~~~~~DG~----------~-~vtq~~I~PG~s~~y~f~~~ 94 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKL--HTEGVVIHWHGIRQ----IGTPWADGT----------A-GVTQCAINPGETFIYNFVVD 94 (541)
T ss_pred CeEEEEcCCEEEEEEEECC--CCCCccEEecCcCC----cCCcccCCC----------C-ccccCCcCCCCEEEEEEEcC
Confidence 5688999999999999973 24579999999842 110001110 0 01123689999999999999
Q ss_pred CceeeEeeechHHHHhccceeEEEEeCCC
Q 017112 333 NPGVWFMHCHLELHTGWGLKTAFAVEDGP 361 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 361 (377)
++|.|.||||...|...||.+.|+|++..
T Consensus 95 ~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 95 RPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred CCEEEEEEecchHHhhccceEEEEEecCC
Confidence 99999999999999999999999998653
No 25
>PLN02835 oxidoreductase
Probab=98.76 E-value=1.3e-06 Score=88.21 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=59.2
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|++++|+|+|.+. ....-|||.||.|.|++..... ..|...|.+.|.+|++..+.+++++
T Consensus 203 ~~~v~~G~~yRlRliNa~~--~~~~~f~i~gH~~~VI~~DG~~------------v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 203 TFSGDQGKTYMFRISNVGL--STSLNFRIQGHTMKLVEVEGSH------------TIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred eEEECCCCEEEEEEEEcCC--CccEEEEECCCEEEEEEECCcc------------CCCceeeEEEECcCceEEEEEEcCC
Confidence 4678899999999999873 4579999999999999985321 2245679999999999999999875
Q ss_pred -ceeeEee
Q 017112 334 -PGVWFMH 340 (377)
Q Consensus 334 -pG~w~~H 340 (377)
+|.|-++
T Consensus 269 ~~g~y~i~ 276 (539)
T PLN02835 269 SPKDYYIV 276 (539)
T ss_pred CCCcEEEE
Confidence 6866555
No 26
>PLN02354 copper ion binding / oxidoreductase
Probab=98.67 E-value=2.6e-06 Score=86.08 Aligned_cols=235 Identities=15% Similarity=0.138 Sum_probs=132.8
Q ss_pred CeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEE-EEeCCCccCceEecEEEeCCCCEE
Q 017112 9 DAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTV-VEVDAVYTKPFTTEAILIAPGQTT 87 (377)
Q Consensus 9 d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~V-Ia~DG~~v~P~~v~~l~l~~GqR~ 87 (377)
..++|||+.. .|.|+++.|.+.++++.|.-.. ...+...|-.+.- -..||.+ . .+-.|.||+.+
T Consensus 47 ~~~~iNGq~P---------GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~---~--TQcpI~PG~sf 111 (552)
T PLN02354 47 QVILINGQFP---------GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVP---G--TNCPIPPGTNF 111 (552)
T ss_pred EEEEECCCCc---------CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCc---C--CcCCCCCCCcE
Confidence 4688999852 6899999999999999999743 3344444433322 2379964 2 45689999999
Q ss_pred EEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhccCCCCCCCCCCC
Q 017112 88 NVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADV 167 (377)
Q Consensus 88 dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~ 167 (377)
.--+++.+..|.||..+....... +... .+++. .+....+. + ....++ +.. -.+.+... ...
T Consensus 112 ~Y~F~~~~q~GT~WYHsH~~~Q~~---~Gl~-G~lII-~~~~~~~~---p-~~~~d~-e~~----l~l~Dw~~----~~~ 173 (552)
T PLN02354 112 TYHFQPKDQIGSYFYYPSTGMHRA---AGGF-GGLRV-NSRLLIPV---P-YADPED-DYT----VLIGDWYT----KSH 173 (552)
T ss_pred EEEEEeCCCCcceEEecCccceec---CCcc-ceEEE-cCCcCCCC---C-CCCcCc-eEE----EEeeeecc----CCH
Confidence 888887534799998765321110 1111 22333 22111000 0 000000 000 00000000 000
Q ss_pred CcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCCCCCCCCCCccC
Q 017112 168 PQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLG 247 (377)
Q Consensus 168 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 247 (377)
..... .+..+.. .+..-...|||+....
T Consensus 174 -~~~~~--~~~~g~~--------~~~~d~~liNG~~~~~----------------------------------------- 201 (552)
T PLN02354 174 -TALKK--FLDSGRT--------LGRPDGVLINGKSGKG----------------------------------------- 201 (552)
T ss_pred -HHHHH--HHhcCCC--------CCCCCeEEEeCCcCCC-----------------------------------------
Confidence 00000 0000000 0000113455542200
Q ss_pred cCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEE
Q 017112 248 TSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAI 327 (377)
Q Consensus 248 ~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i 327 (377)
.......+.++.|++.+|+|+|.+. ....-||+.||.|.|++..... ..|...|++.|.+|++..+
T Consensus 202 ~~~~~~~~~v~~Gk~yRlRiINa~~--~~~~~f~IdgH~~tVIa~DG~~------------v~p~~~~~l~i~~GqRydV 267 (552)
T PLN02354 202 DGKDEPLFTMKPGKTYRYRICNVGL--KSSLNFRIQGHKMKLVEMEGSH------------VLQNDYDSLDVHVGQCFSV 267 (552)
T ss_pred CCCCceEEEECCCCEEEEEEEecCC--CceEEEEECCceEEEEEeCCcc------------cCCcceeEEEEccCceEEE
Confidence 0011346789999999999999874 4579999999999999985321 2345579999999999999
Q ss_pred EEEcCC-ceeeEeeec
Q 017112 328 RFRADN-PGVWFMHCH 342 (377)
Q Consensus 328 ~~~~d~-pG~w~~HCH 342 (377)
.+++++ +|.|-+.-.
T Consensus 268 lv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 268 LVTANQAPKDYYMVAS 283 (552)
T ss_pred EEECCCCCCcEEEEEe
Confidence 999986 788766654
No 27
>PLN02792 oxidoreductase
Probab=98.66 E-value=2.6e-06 Score=85.75 Aligned_cols=73 Identities=11% Similarity=0.096 Sum_probs=59.3
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|++++|+|+|.+. ...+-|+|.||.|.|++.... +..|...|.+.|.+|++..|.++++.
T Consensus 194 ~~~v~~Gk~yRlRliNa~~--~~~~~f~i~gH~~tVI~~DG~------------~v~p~~~~~l~i~~GqRydVlV~a~~ 259 (536)
T PLN02792 194 SITVDKGKTYRFRISNVGL--QTSLNFEILGHQLKLIEVEGT------------HTVQSMYTSLDIHVGQTYSVLVTMDQ 259 (536)
T ss_pred eEEECCCCEEEEEEEEcCC--CceEEEEECCcEEEEEEeCCc------------cCCCcceeEEEEccCceEEEEEEcCC
Confidence 5788999999999999873 457899999999999998532 12355679999999999999999987
Q ss_pred -ceeeEee
Q 017112 334 -PGVWFMH 340 (377)
Q Consensus 334 -pG~w~~H 340 (377)
+|.|-+.
T Consensus 260 ~~g~Y~i~ 267 (536)
T PLN02792 260 PPQNYSIV 267 (536)
T ss_pred CCceEEEE
Confidence 5766554
No 28
>PLN02991 oxidoreductase
Probab=98.64 E-value=3e-06 Score=85.28 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=128.6
Q ss_pred CeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEE-EEEeCCCccCceEecEEEeCCCCEE
Q 017112 9 DAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFT-VVEVDAVYTKPFTTEAILIAPGQTT 87 (377)
Q Consensus 9 d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~-VIa~DG~~v~P~~v~~l~l~~GqR~ 87 (377)
..++|||+.. .|.|+++.|++.++++.|.-.. ...+...|-.+. =-..||.+ . .+-.|.||+.+
T Consensus 48 ~~~~vNG~~P---------GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~---~--tQcpI~PG~sf 112 (543)
T PLN02991 48 QGILINGKFP---------GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVY---G--TTCPIPPGKNY 112 (543)
T ss_pred EEEEEcCCCC---------CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCC---C--CCCccCCCCcE
Confidence 4688999852 6899999999999999999753 444555554432 13479963 3 25689999998
Q ss_pred EEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhccCCCCCCCCCCC
Q 017112 88 NVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADV 167 (377)
Q Consensus 88 dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~ 167 (377)
.--+++++.+|.||..+...... .+.. ..+++..... ....+ .+..++ +.. -.|. +... ..
T Consensus 113 tY~F~~~~q~GT~WYHsH~~~q~---~~Gl-~G~lIV~~~~-~~~~p----~~~~d~-d~~----i~l~---DW~~-~~- 173 (543)
T PLN02991 113 TYALQVKDQIGSFYYFPSLGFHK---AAGG-FGAIRISSRP-LIPVP----FPAPAD-DYT----VLIG---DWYK-TN- 173 (543)
T ss_pred EEEEEeCCCCcceEEecCcchhh---hCCC-eeeEEEeCCc-ccCcc----cccccc-eeE----EEec---ceec-CC-
Confidence 88888854479999987642211 1112 2223333221 11100 000000 000 0000 0000 00
Q ss_pred CcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCCCCCCCCCCccC
Q 017112 168 PQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLG 247 (377)
Q Consensus 168 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 247 (377)
....... +..+ +.. ...-...|||+..
T Consensus 174 ~~~~~~~--~~~~-~~~-------~~~d~~liNG~~~------------------------------------------- 200 (543)
T PLN02991 174 HKDLRAQ--LDNG-GKL-------PLPDGILINGRGS------------------------------------------- 200 (543)
T ss_pred HHHHHHH--hhcC-CCC-------CCCCEEEEccCCC-------------------------------------------
Confidence 0000000 0000 000 0000123333211
Q ss_pred cCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEE
Q 017112 248 TSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAI 327 (377)
Q Consensus 248 ~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i 327 (377)
...+.++.|++++|+|+|.+. ...+-|+|.||.|+|++.... +..|...|++.|.+|++..+
T Consensus 201 ----~~~~~v~~G~~yRlRiINa~~--~~~~~~~idgH~~tVIa~DG~------------~~~p~~~~~l~i~~GQRydv 262 (543)
T PLN02991 201 ----GATLNIEPGKTYRLRISNVGL--QNSLNFRIQNHTMKLVEVEGT------------HTIQTPFSSLDVHVGQSYSV 262 (543)
T ss_pred ----CceEEECCCCEEEEEEEeccC--CeeEEEEECCCEEEEEEeCCc------------cccceeeeEEEEcCCcEEEE
Confidence 124788899999999999873 346899999999999987422 12356679999999999999
Q ss_pred EEEcCC-ce-eeEe
Q 017112 328 RFRADN-PG-VWFM 339 (377)
Q Consensus 328 ~~~~d~-pG-~w~~ 339 (377)
.+++++ +| .|+-
T Consensus 263 lv~a~~~~~~y~i~ 276 (543)
T PLN02991 263 LITADQPAKDYYIV 276 (543)
T ss_pred EEECCCCCCcEEEE
Confidence 999988 45 3543
No 29
>PRK10883 FtsI repressor; Provisional
Probab=98.59 E-value=6.7e-06 Score=81.82 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=58.0
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeee-cCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHL-HGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~Hl-Hg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
.+.++. .+++|+|.|.+. ....-+++ +||.|+|++...|.. ..|...|.+.|.+|+++.|.++++
T Consensus 221 ~~~v~~-~~~RlRliNas~--~~~~~l~l~d~~~~~vIa~DGg~~-----------~~P~~~~~l~l~pGeR~dvlVd~~ 286 (471)
T PRK10883 221 YVEVSR-GWVRLRLLNASN--ARRYQLQMSDGRPLHVIAGDQGFL-----------PAPVSVKQLSLAPGERREILVDMS 286 (471)
T ss_pred eEEecC-CEEEEEEEEccC--CceEEEEEcCCCeEEEEEeCCCcc-----------cCCcEeCeEEECCCCeEEEEEECC
Confidence 355654 478999999873 34567777 899999999864432 245567899999999999999998
Q ss_pred CceeeEeee
Q 017112 333 NPGVWFMHC 341 (377)
Q Consensus 333 ~pG~w~~HC 341 (377)
+.+.|.+++
T Consensus 287 ~~~~~~l~~ 295 (471)
T PRK10883 287 NGDEVSITA 295 (471)
T ss_pred CCceEEEEC
Confidence 878888886
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=98.54 E-value=7.1e-06 Score=82.72 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=54.8
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|++++|+|+|.+. ...+.|++.||.|+|++.... +..|...|.+.|.+|++..+.+++++
T Consensus 202 ~~~v~~G~~yRlRiiNa~~--~~~~~~~IdgH~~tVIa~DG~------------~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 202 FFAFEPGKTYRLRISNVGL--KTCLNFRIQDHDMLLVETEGT------------YVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred eEEeCCCCEEEEEEEeccC--CceEEEEECCcEEEEEEECCe------------ECCCceeeEEEEcCCceEEEEEEcCC
Confidence 5788899999999999873 346999999999999987422 22355679999999999999999974
No 31
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.53 E-value=1.3e-05 Score=81.16 Aligned_cols=236 Identities=15% Similarity=0.167 Sum_probs=130.5
Q ss_pred CeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEE-EEEeCCCccCceEecEEEeCCCCEE
Q 017112 9 DAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFT-VVEVDAVYTKPFTTEAILIAPGQTT 87 (377)
Q Consensus 9 d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~-VIa~DG~~v~P~~v~~l~l~~GqR~ 87 (377)
..+++||+.. .|.|+++.|.+.++++.|.-......+...|-.+. --..||.+- +.+..|.||+.+
T Consensus 28 ~~~~~NG~~P---------GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~PG~sf 94 (538)
T TIGR03390 28 YSVVVNGTSP---------GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPPGHFF 94 (538)
T ss_pred EEEEECCcCC---------CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCCCCcE
Confidence 4689999862 68999999999999999985433445555554332 223788864 233468899977
Q ss_pred EEEEEeC-CCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhccCCCCCCCCCC
Q 017112 88 NVLVQAN-QKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPAD 166 (377)
Q Consensus 88 dvlv~~~-~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~ 166 (377)
.--++++ ..+|.||..+...... .. ..+.|...+..... .. .+. +.. -.|.+.... ..
T Consensus 95 ~Y~f~~~~~q~GT~WYHsH~~~Q~----~~--l~G~lIV~~~~~~~------~~-~d~-e~~----l~l~Dw~~~---~~ 153 (538)
T TIGR03390 95 DYEIKPEPGDAGSYFYHSHVGFQA----VT--AFGPLIVEDCEPPP------YK-YDD-ERI----LLVSDFFSA---TD 153 (538)
T ss_pred EEEEEecCCCCeeeEEecCCchhh----hc--ceeEEEEccCCccC------CC-ccC-cEE----EEEeCCCCC---CH
Confidence 7777764 2479999977642111 11 33333333221100 00 110 000 000000000 00
Q ss_pred CCcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCCCCCCCCCCcc
Q 017112 167 VPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASL 246 (377)
Q Consensus 167 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 246 (377)
......+ ....... .+..-...|||+........ ..++.
T Consensus 154 --~~~~~~~-~~~~~~~-------~~~~d~~liNG~~~~~~~~~-------------------------~~~~~------ 192 (538)
T TIGR03390 154 --EEIEQGL-LSTPFTW-------SGETEAVLLNGKSGNKSFYA-------------------------QINPS------ 192 (538)
T ss_pred --HHHHhhh-hccCCcc-------CCCCceEEECCccccccccc-------------------------cccCC------
Confidence 0000000 0000000 00011245666532100000 00000
Q ss_pred CcCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCc-eEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEE
Q 017112 247 GTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYN-FFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWT 325 (377)
Q Consensus 247 ~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~-f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~ 325 (377)
..| ....+.++.|++++|+|+|.+. ....-|+|.||. |+|++.... +..|...|.+.|.+|++.
T Consensus 193 ~~~-~~~~~~v~~G~~yRlRlINa~~--~~~~~~~idgH~~~~VIa~DG~------------~~~P~~v~~l~l~~GqRy 257 (538)
T TIGR03390 193 GSC-MLPVIDVEPGKTYRLRFIGATA--LSLISLGIEDHENLTIIEADGS------------YTKPAKIDHLQLGGGQRY 257 (538)
T ss_pred CCC-cceEEEECCCCEEEEEEEccCC--ceEEEEEECCCCeEEEEEeCCC------------CCCceEeCeEEEccCCEE
Confidence 011 1246889999999999999873 346889999999 999998522 345778899999999999
Q ss_pred EEEEEcCCc
Q 017112 326 AIRFRADNP 334 (377)
Q Consensus 326 ~i~~~~d~p 334 (377)
.|.++++++
T Consensus 258 dVlv~~~~~ 266 (538)
T TIGR03390 258 SVLFKAKTE 266 (538)
T ss_pred EEEEECCCc
Confidence 999999864
No 32
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.52 E-value=1.8e-05 Score=80.37 Aligned_cols=239 Identities=15% Similarity=0.158 Sum_probs=133.8
Q ss_pred CeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEE-EeCCCccCceEecEEEeCCCCEE
Q 017112 9 DAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVV-EVDAVYTKPFTTEAILIAPGQTT 87 (377)
Q Consensus 9 d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VI-a~DG~~v~P~~v~~l~l~~GqR~ 87 (377)
..++|||+.. .|.|+++.|.+.++++.|--. ....+...|..+.-- -.||. |. .+..|.||+.+
T Consensus 49 ~vi~vNGq~P---------GPtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv---~~--TQcPI~PG~sf 113 (596)
T PLN00044 49 EAIGINGQFP---------GPALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGV---GG--TNCAIPAGWNW 113 (596)
T ss_pred EEEEEcCcCC---------CCcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCC---CC--CcCCcCCCCcE
Confidence 4688999863 689999999999999999975 345566677554332 47996 33 45789999999
Q ss_pred EEEEEeCCCCCceeEEeeccCCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCChhhHHhhhhhccCCCCCCCCCCC
Q 017112 88 NVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPADV 167 (377)
Q Consensus 88 dvlv~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~ 167 (377)
.--+++++.+|.||-.+....... +.. ..+++.+... ....+ . ..+...+... .|.+-.. ..
T Consensus 114 tY~F~~~dq~GT~WYHsH~~~Q~~---~Gl-~GalII~~~~-~~~~P-~-~~~~~~e~~i------~l~DW~~----~~- 175 (596)
T PLN00044 114 TYQFQVKDQVGSFFYAPSTALHRA---AGG-YGAITINNRD-VIPIP-F-GFPDGGDITL------FIADWYA----RD- 175 (596)
T ss_pred EEEEEeCCCCceeEeeccchhhhh---CcC-eeEEEEcCcc-ccccc-c-cCCcccceEE------Eeccccc----CC-
Confidence 888888544899999775321110 111 2234443321 11110 0 0000000000 0000000 00
Q ss_pred CcccceeEEEEeccCCCCCCcccCCceeeeeecceeeecCchhhhhhhhcccCcccccCCCCCCCCCCCCCCCCCCCccC
Q 017112 168 PQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLG 247 (377)
Q Consensus 168 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 247 (377)
...... .+..+. . .+..-...|||+.... .+. .. ..
T Consensus 176 ~~~~~~--~l~~g~--~------~~~~d~~lING~g~~~------------------------------~n~---~~-~~ 211 (596)
T PLN00044 176 HRALRR--ALDAGD--L------LGAPDGVLINAFGPYQ------------------------------YND---SL-VP 211 (596)
T ss_pred HHHHHH--HHhcCC--C------CCCCCceEEcccCccc------------------------------cCC---cc-cc
Confidence 000000 000000 0 0000012234321100 000 00 00
Q ss_pred cCCceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEE
Q 017112 248 TSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAI 327 (377)
Q Consensus 248 ~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i 327 (377)
.......+.++.|++++|+|+|.+. ....-|+|-||.|.|++.. |. +..|...|.+.|.+|++..+
T Consensus 212 ~~~~~~~i~V~~Gk~yRlRiINaa~--~~~~~fsIdgH~mtVIa~D-G~-----------~v~P~~vd~i~I~~GQRydV 277 (596)
T PLN00044 212 PGITYERINVDPGKTYRFRVHNVGV--ATSLNFRIQGHNLLLVEAE-GS-----------YTSQQNYTNLDIHVGQSYSF 277 (596)
T ss_pred CCCccceEEECCCCEEEEEEEEccC--CceEEEEECCCEEEEEEeC-Cc-----------ccCceeeeeEEEcCCceEEE
Confidence 0001236889999999999999873 4578899999999999984 22 23467789999999999999
Q ss_pred EEEcCCc-e--eeE
Q 017112 328 RFRADNP-G--VWF 338 (377)
Q Consensus 328 ~~~~d~p-G--~w~ 338 (377)
.++++.+ | .||
T Consensus 278 LV~a~q~~~~~Y~i 291 (596)
T PLN00044 278 LLTMDQNASTDYYV 291 (596)
T ss_pred EEECCCCCCCceEE
Confidence 9999985 5 476
No 33
>PRK10965 multicopper oxidase; Provisional
Probab=98.51 E-value=9.3e-06 Score=81.69 Aligned_cols=80 Identities=23% Similarity=0.234 Sum_probs=59.7
Q ss_pred CeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEE
Q 017112 9 DAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTN 88 (377)
Q Consensus 9 d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~d 88 (377)
..+.+||+.. .|+|++++|++.++++.|--.. ...+...|-.+.= +.||.+ ...|.||+.++
T Consensus 66 ~~~~yNg~~P---------GPtIr~~~Gd~v~v~~~N~L~~-~ttiHwHGl~~~~-~~DG~p-------q~~I~PG~s~~ 127 (523)
T PRK10965 66 ATWGYNGNLL---------GPAVRLQRGKAVTVDITNQLPE-ETTLHWHGLEVPG-EVDGGP-------QGIIAPGGKRT 127 (523)
T ss_pred EEEEECCCCC---------CceEEEECCCEEEEEEEECCCC-CccEEcccccCCC-ccCCCC-------CCCCCCCCEEE
Confidence 3677788642 5999999999999999998653 3345555544321 478874 34578999999
Q ss_pred EEEEeCCCCCceeEEeec
Q 017112 89 VLVQANQKPGRYFMAARP 106 (377)
Q Consensus 89 vlv~~~~~~g~y~l~~~~ 106 (377)
.-++.++.+|.||.....
T Consensus 128 Y~f~~~q~aGT~WYH~H~ 145 (523)
T PRK10965 128 VTFTVDQPAATCWFHPHQ 145 (523)
T ss_pred EEeccCCCCceEEEecCC
Confidence 988888777999987764
No 34
>PLN02191 L-ascorbate oxidase
Probab=98.50 E-value=6.4e-07 Score=91.04 Aligned_cols=85 Identities=24% Similarity=0.306 Sum_probs=70.0
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccce------eeeCCCCEEE
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNT------AAVPTGGWTA 326 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDt------v~v~~~~~~~ 326 (377)
+.++++.|+++++.+.|.. ....+.+|+||.... +. .|.|- -.|+||+..+
T Consensus 54 P~i~~~~Gd~v~v~v~N~l--~~~~tsiHwHGl~~~----~~-----------------~~~DGv~gvtq~pI~PG~s~~ 110 (574)
T PLN02191 54 PTIDAVAGDTIVVHLTNKL--TTEGLVIHWHGIRQK----GS-----------------PWADGAAGVTQCAINPGETFT 110 (574)
T ss_pred CeEEEEcCCEEEEEEEECC--CCCCccEECCCCCCC----CC-----------------ccccCCCccccCCcCCCCeEE
Confidence 5789999999999999973 335799999998631 11 12232 2688999999
Q ss_pred EEEEcCCceeeEeeechHHHHhccceeEEEEeCC
Q 017112 327 IRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDG 360 (377)
Q Consensus 327 i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 360 (377)
.+|+++++|.|.||||...+...||.|.+.|++.
T Consensus 111 Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~ 144 (574)
T PLN02191 111 YKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVA 144 (574)
T ss_pred EEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccC
Confidence 9999999999999999999999999999999753
No 35
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.48 E-value=6.5e-07 Score=74.64 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=58.7
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceE--EEEecCCCCCCCCCCCCCCCCCCCccceeeeCC---C--CEE
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFF--VVGTGIGNFDPVKYPANYNLVDPIERNTAAVPT---G--GWT 325 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~--vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~---~--~~~ 325 (377)
+.+.++.|++|++++.|... +..|.|-||.+.-. ......| .|..-..-.+++ | ++.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~~~p~mdG--------------~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYPYMPGMDG--------------LGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCccccccccCC--------------CCccccCcccCCCCCCcccee
Confidence 56889999999999999752 34566666532211 0000000 011111112221 2 246
Q ss_pred EEEEEcCCceeeEeeechHHHHhccceeEEEEe
Q 017112 326 AIRFRADNPGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 326 ~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
.+.|+++.+|.+.||||+..|...||.+.+.|+
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 888998999999999999999999999999874
No 36
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.39 E-value=1.1e-06 Score=74.54 Aligned_cols=94 Identities=19% Similarity=0.228 Sum_probs=76.7
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
...+.++.|++++|+|+|.+. ...+.|++.||.|+|++..... ..|...|++.|.+|+++.+.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG~~------------v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADGVP------------VEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETTEE------------EEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeecccc------------ccccccceEEeeCCeEEEEEEEe
Confidence 457899999999999999873 4579999999999999984221 12778899999999999999999
Q ss_pred CC-ceeeEeee----chHHHHhccceeEEEEeC
Q 017112 332 DN-PGVWFMHC----HLELHTGWGLKTAFAVED 359 (377)
Q Consensus 332 d~-pG~w~~HC----Hi~~H~~~Gm~~~~~v~~ 359 (377)
+. +|.|.+++ +...+...|+...+++..
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 98 99999999 566778888877776543
No 37
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.26 E-value=4e-06 Score=85.16 Aligned_cols=88 Identities=23% Similarity=0.329 Sum_probs=69.4
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.++++.|+.+++.+.|.. +..+.+|+||-..- .. .|+. | ..-.-.|+||+....+|.+.
T Consensus 76 P~ir~~~Gd~v~v~v~N~l---~~~tsiHwHGl~~~--~~----~DGv----------P-~vt~~~I~PG~s~~Y~f~~~ 135 (587)
T TIGR01480 76 PLLRWREGDTVRLRVTNTL---PEDTSIHWHGILLP--FQ----MDGV----------P-GVSFAGIAPGETFTYRFPVR 135 (587)
T ss_pred ceEEEECCCEEEEEEEcCC---CCCceEEcCCCcCC--cc----ccCC----------C-cccccccCCCCeEEEEEECC
Confidence 5789999999999999974 56899999997521 11 1110 0 00012588999999999999
Q ss_pred CceeeEeeechHHHHhccceeEEEEeCC
Q 017112 333 NPGVWFMHCHLELHTGWGLKTAFAVEDG 360 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 360 (377)
.+|.|.||||...++..||.+.|+|++.
T Consensus 136 ~~GTyWYHsH~~~q~~~GL~G~lIV~~~ 163 (587)
T TIGR01480 136 QSGTYWYHSHSGFQEQAGLYGPLIIDPA 163 (587)
T ss_pred CCeeEEEecCchhHhhccceEEEEECCC
Confidence 9999999999999999999999999754
No 38
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.02 E-value=2.3e-05 Score=60.92 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=57.7
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|++|+|+ |.+ ...|.+.++...+..-.. ........+.+.+.||+...+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~pG~t~~~tF~~-- 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGVK--------------ELAKSLSHKDLLNSPGESYEVTFST-- 76 (99)
T ss_pred EEEECCCCEEEEE--ECC---CCCceEEECCCCCccchh--------------hhcccccccccccCCCCEEEEEeCC--
Confidence 5889999999987 543 346888776543221100 0000122466788999998887775
Q ss_pred ceeeEeeechHHHHhccceeEEEEe
Q 017112 334 PGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 334 pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
||.|.|||- -|...||.+.|.|+
T Consensus 77 ~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999873
No 39
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.01 E-value=7.2e-05 Score=61.70 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=68.7
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCcc-----------CceEecEEEeCCCCEEEEEEEeCCC
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-----------KPFTTEAILIAPGQTTNVLVQANQK 96 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v-----------~P~~v~~l~l~~GqR~dvlv~~~~~ 96 (377)
...+.++.|++++|+|+|.+.. ..-|.+.||.|.|++.++... .|...|++.|.+|++..+.++++ .
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~-~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD-N 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-S
T ss_pred cceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-c
Confidence 5689999999999999998776 667999999999999999884 68899999999999999999998 5
Q ss_pred CCceeEEeec
Q 017112 97 PGRYFMAARP 106 (377)
Q Consensus 97 ~g~y~l~~~~ 106 (377)
+|.|.+....
T Consensus 111 ~G~w~~HCHi 120 (138)
T PF07731_consen 111 PGPWLFHCHI 120 (138)
T ss_dssp TEEEEEEESS
T ss_pred ceEEEEEEch
Confidence 7998887653
No 40
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.76 E-value=0.00013 Score=59.05 Aligned_cols=59 Identities=19% Similarity=0.460 Sum_probs=48.6
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|+.|+|++.|.+ +..|.+-++++.+ ...+++|+..+++|.++.
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 578999999999999975 4577777766421 236788999999999999
Q ss_pred ceeeEeeech
Q 017112 334 PGVWFMHCHL 343 (377)
Q Consensus 334 pG~w~~HCHi 343 (377)
||.|.|||-+
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999974
No 41
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.60 E-value=0.00027 Score=71.21 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=70.4
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.+..|+.+.+.+.|.. +..=.+|.||....=-...+|.+ ==.=.|+||+..+.+|+++
T Consensus 59 P~I~~~~gD~ivV~v~N~~---~~~~sihWhGv~q~kn~w~DG~~----------------~TqCPI~Pg~~~tY~F~v~ 119 (563)
T KOG1263|consen 59 PTINAEEGDTIVVNVVNRL---DEPFSIHWHGVRQRKNPWQDGVY----------------ITQCPIQPGENFTYRFTVK 119 (563)
T ss_pred CeEEEEeCCEEEEEEEeCC---CCceEEEeccccccCCccccCCc----------------cccCCcCCCCeEEEEEEeC
Confidence 5688899999999999974 35778899997653222111210 0112678999999999987
Q ss_pred -CceeeEeeechHHHHhccceeEEEEeCCCC
Q 017112 333 -NPGVWFMHCHLELHTGWGLKTAFAVEDGPG 362 (377)
Q Consensus 333 -~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~ 362 (377)
+.|.|.||-|..||.+.||.|.|+|.+...
T Consensus 120 ~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~ 150 (563)
T KOG1263|consen 120 DQIGTLWYHSHVSWQRATGVFGALIINPRPG 150 (563)
T ss_pred CcceeEEEeeccccccccCceeEEEEcCCcc
Confidence 899999999999999999999999986653
No 42
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.59 E-value=0.0003 Score=54.58 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=54.5
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
..+.++.|++|.|+..+ ...|.+++ ...+ +.......... ..-.+..+.+|+...+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~-------~~~~---~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVF-------VADG---MPAGADSDYVP----PGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEE-------ETTS---SHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEE-------eccc---ccccccccccC----ccccceecCCCCEEEEEeC--
Confidence 35889999999987653 23565544 2211 10000000000 0115667889998888877
Q ss_pred CceeeEeeechHHHHhccceeEEEEe
Q 017112 333 NPGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
.+|.|.|+|- - |...||-+.|.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 5 9999999999884
No 43
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.51 E-value=0.00038 Score=70.12 Aligned_cols=78 Identities=18% Similarity=0.351 Sum_probs=60.5
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|+.|.++|.|.....+..|.|.+-++... +.+.||+...+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------------------~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------------------MEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------------------EEEcCCceEEEEEEcCC
Confidence 47889999999999996543467788888554321 25668999999999999
Q ss_pred ceeeEeeechHHHH-hccceeEEEEeC
Q 017112 334 PGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 334 pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
||.|.+||...-|. ..+|.+.+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999973331 248999999864
No 44
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.15 E-value=0.0015 Score=51.14 Aligned_cols=68 Identities=15% Similarity=0.363 Sum_probs=42.3
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|+.+.+++.|.+ ...|-+.+.+.. -...+.+|+..++.|.++.
T Consensus 36 ~i~v~~G~~v~l~~~N~~---~~~h~~~i~~~~----------------------------~~~~l~~g~~~~~~f~~~~ 84 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNND---SRPHEFVIPDLG----------------------------ISKVLPPGETATVTFTPLK 84 (104)
T ss_dssp EEEEETTCEEEEEEEE-S---SS-EEEEEGGGT----------------------------EEEEE-TT-EEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEEECC---CCcEEEEECCCc----------------------------eEEEECCCCEEEEEEcCCC
Confidence 588999999999999975 234555444411 1257889999999999999
Q ss_pred ceeeEeeechHHHHhccceeEEE
Q 017112 334 PGVWFMHCHLELHTGWGLKTAFA 356 (377)
Q Consensus 334 pG~w~~HCHi~~H~~~Gm~~~~~ 356 (377)
||.|-|+|-+.. . |.|.+.
T Consensus 85 ~G~y~~~C~~~~--~--m~G~li 103 (104)
T PF13473_consen 85 PGEYEFYCTMHP--N--MKGTLI 103 (104)
T ss_dssp -EEEEEB-SSS---T--TB----
T ss_pred CEEEEEEcCCCC--c--ceeccc
Confidence 999999999544 3 555554
No 45
>PRK02710 plastocyanin; Provisional
Probab=97.11 E-value=0.0017 Score=52.12 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=51.4
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|++|+|+ |.+ ...|.+.+.+.... + .+| ..+.+|+...+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~~--~---------------------~~~-~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK---LAPHNAVFDGAKEL--S---------------------HKD-LAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC---CCCceEEecCCccc--c---------------------ccc-cccCCCCEEEEEecC--
Confidence 5789999999986 432 34787765432110 0 111 346788887777765
Q ss_pred ceeeEeeechHHHHhccceeEEEEe
Q 017112 334 PGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 334 pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
||.|.|+|- -|...||-+.+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999873
No 46
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0049 Score=50.74 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=64.7
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|++++.++.|.+.+ -|=|-+- ++.-.. +.+.-. ....-..---..++.+.||....+-+.+.+
T Consensus 64 ~~~v~aG~tv~~v~~n~~el---~hef~~~---~~~~~~--~~~~~~---~~~~Dme~d~~~~v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 64 SFEVKAGETVRFVLKNEGEL---KHEFTMD---APDKNL--EHVTHM---ILADDMEHDDPNTVTLAPGKSGELVVVFTG 132 (158)
T ss_pred cccccCCcEEeeeecCcccc---eEEEecc---Cccccc--hhHHHh---hhCCccccCCcceeEeCCCCcEEEEEEecC
Confidence 46788899999999997633 4544443 111111 000000 000000112346899999999999999999
Q ss_pred ceeeEeeechHHHHhccceeEEEEe
Q 017112 334 PGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 334 pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
+|.+-|-|-|-+|.+.||-+.|.|.
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CccEEEEecCCCcccCCcEEEEEeC
Confidence 9999999999999999999999875
No 47
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=96.38 E-value=0.0038 Score=49.98 Aligned_cols=85 Identities=22% Similarity=0.222 Sum_probs=62.0
Q ss_pred CCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEE-EEeCCCccCceEecEEEeCCCCE
Q 017112 8 SDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTV-VEVDAVYTKPFTTEAILIAPGQT 86 (377)
Q Consensus 8 ~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~V-Ia~DG~~v~P~~v~~l~l~~GqR 86 (377)
-..+++||+.. .|+|+++.|++.++++.|.... ...|.+.|..+.- -..||.+-.+ .-.|.||+.
T Consensus 14 ~~~~~~ng~~p---------GPtI~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~ 79 (117)
T PF07732_consen 14 RKVWTYNGQFP---------GPTIRVREGDTVRITVTNNLDE-PTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGES 79 (117)
T ss_dssp EEEEEETTBSS---------EEEEEEETTEEEEEEEEEESSS-GBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEE
T ss_pred EEEEEECCCCC---------CCEEEEEcCCeeEEEEEecccc-ccccccceeeeeeeeecCCccccc----ceeEEeecc
Confidence 35788999852 6899999999999999999843 4456665532111 0257765422 245899999
Q ss_pred EEEEEEeCCCCCceeEEeec
Q 017112 87 TNVLVQANQKPGRYFMAARP 106 (377)
Q Consensus 87 ~dvlv~~~~~~g~y~l~~~~ 106 (377)
+..-+++++.+|.||-....
T Consensus 80 ~~Y~~~~~~~~Gt~wYH~H~ 99 (117)
T PF07732_consen 80 FTYEFTANQQAGTYWYHSHV 99 (117)
T ss_dssp EEEEEEESSCSEEEEEEECS
T ss_pred eeeeEeeeccccceeEeeCC
Confidence 99999998878999987664
No 48
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.38 E-value=0.019 Score=57.21 Aligned_cols=88 Identities=24% Similarity=0.349 Sum_probs=69.0
Q ss_pred CeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCcc---CceEecEEEeCCCC
Q 017112 9 DAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT---KPFTTEAILIAPGQ 85 (377)
Q Consensus 9 d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v---~P~~v~~l~l~~Gq 85 (377)
..+.+||+.- ......+.++.|+++||+|.|-+. -..-|.+.|+.|.|++.| ... .+...|++.+.+|+
T Consensus 343 ~~~~~n~~~~------~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~ 414 (451)
T COG2132 343 YVWAINGKAF------DDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGE 414 (451)
T ss_pred ccccccCccC------CCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCe
Confidence 4456666641 112567889999999999999998 566799999999999999 333 35678999999999
Q ss_pred EEEEEEEeCCCCCceeEEee
Q 017112 86 TTNVLVQANQKPGRYFMAAR 105 (377)
Q Consensus 86 R~dvlv~~~~~~g~y~l~~~ 105 (377)
|..+.++++. +|.|.+...
T Consensus 415 ~~~v~~~a~~-~g~~~~HCH 433 (451)
T COG2132 415 RLLVRFDADY-PGPWMFHCH 433 (451)
T ss_pred EEEEEEeCCC-CCceEEecc
Confidence 9999999986 577766544
No 49
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=96.26 E-value=0.017 Score=46.00 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=30.6
Q ss_pred CCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCCC
Q 017112 321 TGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPG 362 (377)
Q Consensus 321 ~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~ 362 (377)
+++... ++++.+|.+-|+|- -|...||.+.+.|.++..
T Consensus 54 ~g~~~~--~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~ 91 (116)
T TIGR02375 54 INEEYT--VTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPA 91 (116)
T ss_pred CCCEEE--EEeCCCEEEEEEcC--CCccCCCEEEEEECCCCc
Confidence 455544 45578999999998 999999999999987543
No 50
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=95.98 E-value=0.034 Score=46.37 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=51.9
Q ss_pred CCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCce--EEE-EEeCCCccCceEecEEEe---
Q 017112 8 SDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHN--FTV-VEVDAVYTKPFTTEAILI--- 81 (377)
Q Consensus 8 ~d~~liNG~~~~~~~~~~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~--~~V-Ia~DG~~v~P~~v~~l~l--- 81 (377)
.+.|.+||.. .|.|++++|+++++++.|........|.|..+. +.. -+.||....+. ...+
T Consensus 41 ~~~f~~~~~~----------~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~---~~i~p~~ 107 (148)
T TIGR03095 41 MYSFEIHDLK----------NPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAG---TGFLPPP 107 (148)
T ss_pred ceeEEecCCC----------CCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCcccc---CcccCCC
Confidence 4566777765 689999999999999999975333444454332 111 13566532211 1112
Q ss_pred CCCCE--EEEEEEeCCCCCceeEEee
Q 017112 82 APGQT--TNVLVQANQKPGRYFMAAR 105 (377)
Q Consensus 82 ~~GqR--~dvlv~~~~~~g~y~l~~~ 105 (377)
..|+. .++..++++ +|.||....
T Consensus 108 ~~g~~~~~~~tf~f~~-aGtywyhC~ 132 (148)
T TIGR03095 108 KSGKFGYTDFTYHFST-AGTYWYLCT 132 (148)
T ss_pred CCCccceeEEEEECCC-CeEEEEEcC
Confidence 23555 488888875 799998744
No 51
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.96 E-value=0.044 Score=40.82 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=45.8
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.+..|++|.|+ |.+ ...|..+++...+ +.. .+.. ..+.+++... ++++.
T Consensus 12 ~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~--------------~~~~-~~~~~g~~~~--~tf~~ 62 (83)
T TIGR02657 12 ELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEA--------------ALKG-PMMKKEQAYS--LTFTE 62 (83)
T ss_pred EEEECCCCEEEEE--ECC---CCCccEEecCCCC-------ccc--------------cccc-cccCCCCEEE--EECCC
Confidence 5788999999984 543 3578888654221 000 0111 1334555444 56678
Q ss_pred ceeeEeeechHHHHhccceeEEEEe
Q 017112 334 PGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 334 pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
||.|.|||=+ |- +|.+.+.|+
T Consensus 63 ~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 63 AGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CEEEEEEcCC--CC--CCeEEEEEC
Confidence 9999999986 54 599988874
No 52
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=95.53 E-value=0.078 Score=42.11 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=48.1
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.|+.|++|.|+-... ...|.... .+.+.|+. ......+|+...+.| +.
T Consensus 43 ~ltV~~GdTVtw~~~~d----~~~HnV~s---------~~~~~f~s---------------~~~~~~~G~t~s~Tf--~~ 92 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE----GGGHNVVS---------DGDGDLDE---------------SERVSEEGTTYEHTF--EE 92 (115)
T ss_pred EEEECCCCEEEEEECCC----CCCEEEEE---------CCCCCccc---------------cccccCCCCEEEEEe--cC
Confidence 57899999999975432 23455432 22122221 111234566666655 68
Q ss_pred ceeeEeeechHHHHhccceeEEEEe
Q 017112 334 PGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 334 pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
||.|.|+|- .|..+||.+.|.|+
T Consensus 93 ~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 93 PGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999998 89999999999873
No 53
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.45 E-value=0.072 Score=43.34 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=48.4
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeCCCCCceeEEee
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 105 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~~g~y~l~~~ 105 (377)
+..|+|++|.+++|++.|.+.. ...+.++++. -+..|.+||+..+-+.+++ +|.|+....
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i~~~g----------------is~~I~pGet~TitF~adK-pG~Y~y~C~ 119 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPI-SEGFSIDAYG----------------ISEVIKAGETKTISFKADK-AGAFTIWCQ 119 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCC-ccceEECCCC----------------cceEECCCCeEEEEEECCC-CEEEEEeCC
Confidence 6789999999999999999874 4556666542 1577899999999999986 799998654
No 54
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.00 E-value=0.41 Score=41.42 Aligned_cols=102 Identities=10% Similarity=0.124 Sum_probs=62.2
Q ss_pred CceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCC-CC--CCCC--CCCCCCCccceeeeCCCCE
Q 017112 250 RATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDP-VK--YPAN--YNLVDPIERNTAAVPTGGW 324 (377)
Q Consensus 250 ~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~-~~--~~~~--~~~~np~~rDtv~v~~~~~ 324 (377)
++...+.++.|-.|.+++.|.+. .. |.|-|+..+...... .. +..- +-...+.--..--+.+|+.
T Consensus 83 ~G~m~i~VPAGw~V~i~f~N~~~---l~-------Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 83 NGQMTIYVPAGWNVQITFTNQES---LP-------HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CCcEEEEEcCCCEEEEEEEcCCC---CC-------eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 34456788999999999999753 34 466666543211100 00 0000 0001110001113446666
Q ss_pred EEEEEEcCCceeeEeeechHHHHhccceeEEEEeCCC
Q 017112 325 TAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGP 361 (377)
Q Consensus 325 ~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 361 (377)
...-+..-.||.|.|=|-+.-|...||-+.+.|.+..
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 6666666679999999999999999999999997653
No 55
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.81 E-value=0.13 Score=40.01 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=40.7
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeCCCCCceeEEee
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 105 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~~g~y~l~~~ 105 (377)
+..+++++|+.++|.+.|.+... ..|.+++ .. ....|.+|+...+-+.+.+ +|.|.+.-.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~---------------~~-~~~~l~~g~~~~~~f~~~~-~G~y~~~C~ 93 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRP-HEFVIPD---------------LG-ISKVLPPGETATVTFTPLK-PGEYEFYCT 93 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS--EEEEEGG---------------GT-EEEEE-TT-EEEEEEEE-S--EEEEEB-S
T ss_pred cCEEEEcCCCeEEEEEEECCCCc-EEEEECC---------------Cc-eEEEECCCCEEEEEEcCCC-CEEEEEEcC
Confidence 45899999999999999998764 5566655 11 1267899999999997764 799988644
No 56
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.74 E-value=0.28 Score=39.38 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=53.7
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
.+.+.++.|+.+++.+.+. +..|.|.+.+...++ .+.||....+.|.+
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k~----------------------------d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGIKM----------------------------DAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTEEE----------------------------EEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCccc----------------------------ccccccceeeeeee
Confidence 3468899999999999995 567998887655433 45578889999999
Q ss_pred CCceeeEeeechHHH-HhccceeEEEE
Q 017112 332 DNPGVWFMHCHLELH-TGWGLKTAFAV 357 (377)
Q Consensus 332 d~pG~w~~HCHi~~H-~~~Gm~~~~~v 357 (377)
+.||.+-..|...=. -...|.+.+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 999999999985432 22445555554
No 57
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=93.57 E-value=0.28 Score=43.17 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=55.9
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|+.|++.+.+. +..|.|.+-+...+ +| .-||....+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~----DV~Hsf~ip~~~~k-------------------------~d---a~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSK----DVIHSFWVPELGGK-------------------------ID---AIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeC----chhhcccccccCce-------------------------EE---ecCCcEEEEEEEeC
Confidence 468899999999999985 44576666443221 23 44788899999999
Q ss_pred CceeeEeeech---HHHHhccceeEEEEeCC
Q 017112 333 NPGVWFMHCHL---ELHTGWGLKTAFAVEDG 360 (377)
Q Consensus 333 ~pG~w~~HCHi---~~H~~~Gm~~~~~v~~~ 360 (377)
.||.+...|.- ..| ..|.+.+.|.+.
T Consensus 165 ~~G~y~~~c~e~cG~~h--~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGH--SLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCc--cCCeEEEEEECH
Confidence 99999999997 455 678888887654
No 58
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=93.52 E-value=0.96 Score=38.49 Aligned_cols=101 Identities=10% Similarity=0.117 Sum_probs=60.5
Q ss_pred CceeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCC-CCCCC--CCCCCCC--CCCCCccceeeeCCCCE
Q 017112 250 RATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIG-NFDPV--KYPANYN--LVDPIERNTAAVPTGGW 324 (377)
Q Consensus 250 ~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g-~~~~~--~~~~~~~--~~np~~rDtv~v~~~~~ 324 (377)
.+...+-++.|-.|.+++.|.. ..+| .+-|+..+.. ++.+. .+.+..+ ...+.--..=-+..|..
T Consensus 82 ~G~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs 151 (195)
T TIGR03094 82 YGAMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHS 151 (195)
T ss_pred CCceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEeecccccCccccccccccce
Confidence 3445788899999999999975 2344 4455543321 00000 0000000 00011001112335666
Q ss_pred EEEEEEcCCceeeEeeechHHHHhccceeEEEEeCC
Q 017112 325 TAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDG 360 (377)
Q Consensus 325 ~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 360 (377)
...-+..-.||.+.+=|=+.-|++.||-+.+.|.+.
T Consensus 152 ~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 152 RSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred eEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 666667778999999999999999999999998654
No 59
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=93.13 E-value=0.45 Score=38.46 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=47.9
Q ss_pred eeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcCC
Q 017112 254 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 333 (377)
Q Consensus 254 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d~ 333 (377)
.+.++.|++|+|+-.. ...|..+.=+-. .|..-+++....+.....-|..
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s~~~Tfe~-- 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM-----------------------DPEGSGTLKAGINESFTHTFET-- 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC-----------------------CcccccccccCCCcceEEEecc--
Confidence 4788999999997442 225655443322 1112233344444555555554
Q ss_pred ceeeEeeechHHHHhccceeEEEEe
Q 017112 334 PGVWFMHCHLELHTGWGLKTAFAVE 358 (377)
Q Consensus 334 pG~w~~HCHi~~H~~~Gm~~~~~v~ 358 (377)
||.+.|.|- .|..+||-+.+.|.
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeC
Confidence 999999996 79999999999985
No 60
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=91.20 E-value=1.3 Score=38.41 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=51.8
Q ss_pred CCceeEEEEeCCCEEEEEEEecCCCCeEEEEE-c-Cc---eEEEEEeCCCcc-C----ceEecEEEeCCCCEEEEEEEeC
Q 017112 25 EKHTFAMEVESGKTYLLRIINAALNDELFFAI-A-GH---NFTVVEVDAVYT-K----PFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 25 ~~~~~~i~v~pG~~yRlRlINa~~~~~~~~~i-d-gh---~~~VIa~DG~~v-~----P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
.....+|.|..|-++.++++|.+... .+|-| + +- ..-.|+.||..+ . |-....--|..||+++.+...-
T Consensus 82 s~G~m~i~VPAGw~V~i~f~N~~~l~-Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l 160 (196)
T PF06525_consen 82 SNGQMTIYVPAGWNVQITFTNQESLP-HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDL 160 (196)
T ss_pred cCCcEEEEEcCCCEEEEEEEcCCCCC-eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccC
Confidence 34578999999999999999998653 34444 1 11 244677777554 1 1111122467999999876543
Q ss_pred CCCCceeEEee
Q 017112 95 QKPGRYFMAAR 105 (377)
Q Consensus 95 ~~~g~y~l~~~ 105 (377)
++|.||+...
T Consensus 161 -~aG~YwlvC~ 170 (196)
T PF06525_consen 161 -PAGYYWLVCG 170 (196)
T ss_pred -CCceEEEEcc
Confidence 3799999744
No 61
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=87.52 E-value=1.9 Score=33.13 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=39.7
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCC-ccC-ceEecEEEeCCCCEEEEEEEeCCCCCceeEEee
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAV-YTK-PFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 105 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~-~v~-P~~v~~l~l~~GqR~dvlv~~~~~~g~y~l~~~ 105 (377)
+..|+|++|++++|. |.+. ...++.++....- +|. ... ....+.+.+.||+.+++-++ + +|.|.....
T Consensus 16 P~~i~v~~G~~V~~~--N~~~-~~H~~~~~~~~~~----~~~~~~~~~~~~~~~~~~pG~t~~~tF~--~-~G~y~y~C~ 85 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKG-GPHNVVFDEDAVP----AGVKELAKSLSHKDLLNSPGESYEVTFS--T-PGTYTFYCE 85 (99)
T ss_pred CCEEEECCCCEEEEE--ECCC-CCceEEECCCCCc----cchhhhcccccccccccCCCCEEEEEeC--C-CEEEEEEcC
Confidence 467999999987654 7653 2333443322100 010 011 11225678999999999554 3 688887654
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=85.62 E-value=1.7 Score=36.09 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=52.5
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEc------CceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeCCCCCcee
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIA------GHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYF 101 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~id------gh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~~g~y~ 101 (377)
...+.++.|+++|+-+-|.+-.-. .|-++ +|.-..+.+| ..+=-..+.+.|.||+...+++.+.+ +|.|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~h-ef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~-~g~ye 137 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKH-EFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTG-AGKYE 137 (158)
T ss_pred CCcccccCCcEEeeeecCcccceE-EEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecC-CccEE
Confidence 457889999999999999986543 34443 2222333444 22223456899999999999999986 69999
Q ss_pred EEee
Q 017112 102 MAAR 105 (377)
Q Consensus 102 l~~~ 105 (377)
++..
T Consensus 138 ~~C~ 141 (158)
T COG4454 138 FACN 141 (158)
T ss_pred EEec
Confidence 8754
No 63
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.46 E-value=3.3 Score=37.65 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=55.9
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|+.|++.+... +..|.|.+.+..+++ ..-||....+.+.++
T Consensus 137 n~l~lPv~~~V~f~ltS~----DViHsF~IP~l~~k~----------------------------d~iPG~~~~~~~~~~ 184 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA----DVIHSFWIPQLGGKI----------------------------DAIPGMTTELWLTAN 184 (247)
T ss_pred ceEEEeCCCeEEEEEEec----hhceeEEecCCCcee----------------------------eecCCceEEEEEecC
Confidence 468899999999999985 445766665544332 344578899999999
Q ss_pred CceeeEeeechHHH-HhccceeEEEEeCCC
Q 017112 333 NPGVWFMHCHLELH-TGWGLKTAFAVEDGP 361 (377)
Q Consensus 333 ~pG~w~~HCHi~~H-~~~Gm~~~~~v~~~~ 361 (377)
.||.|-.+|+..-= -...|-+.++|.+.+
T Consensus 185 ~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 185 KPGTYRGICAEYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCeEEEEEcHhhcCCCcccceEEEEEEcHH
Confidence 99999999996442 334677777776543
No 64
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=82.75 E-value=6.6 Score=29.07 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=32.2
Q ss_pred EEEEEecCCCCeEEEEEc-Cc--eEEEEEeCCCccC--------ceEecEEEeCCCCEEEEEEEeCCC---CCceeEEe
Q 017112 40 LLRIINAALNDELFFAIA-GH--NFTVVEVDAVYTK--------PFTTEAILIAPGQTTNVLVQANQK---PGRYFMAA 104 (377)
Q Consensus 40 RlRlINa~~~~~~~~~id-gh--~~~VIa~DG~~v~--------P~~v~~l~l~~GqR~dvlv~~~~~---~g~y~l~~ 104 (377)
.|++.|.+.. .+.|.+. |+ +|.|...+|..|- -+......|.|||...+-.+.+.. +|.|.+.+
T Consensus 5 ~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 5 TLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 4555555543 3334442 22 3444444554441 123467899999999998888763 68998864
No 65
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=82.40 E-value=11 Score=30.14 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=48.2
Q ss_pred eeEEEEeCC-CEEEEEEEecCCCC----eEEEEEc-CceEEEE-------EeCCCccCce----EecEEEeCCCCEEEEE
Q 017112 28 TFAMEVESG-KTYLLRIINAALND----ELFFAIA-GHNFTVV-------EVDAVYTKPF----TTEAILIAPGQTTNVL 90 (377)
Q Consensus 28 ~~~i~v~pG-~~yRlRlINa~~~~----~~~~~id-gh~~~VI-------a~DG~~v~P~----~v~~l~l~~GqR~dvl 90 (377)
...|+|+++ +...+.|-|.+... ..++-|- .-++.-| +.|-.||.+- -..+=+|++||..+|-
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 568999985 88999999998642 2333331 1122222 2355667432 2345579999999999
Q ss_pred EEeCC-CCC-ceeEE
Q 017112 91 VQANQ-KPG-RYFMA 103 (377)
Q Consensus 91 v~~~~-~~g-~y~l~ 103 (377)
++++. .+| +|...
T Consensus 95 F~~~~l~~g~~Y~f~ 109 (125)
T TIGR02695 95 FDVSKLSAGEDYTFF 109 (125)
T ss_pred EECCCCCCCCcceEE
Confidence 99864 345 58664
No 66
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=82.33 E-value=23 Score=28.01 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=24.5
Q ss_pred cCceEEEEEeCCCcc--CceEecEEEeCCCCEEEEEEEeCC
Q 017112 57 AGHNFTVVEVDAVYT--KPFTTEAILIAPGQTTNVLVQANQ 95 (377)
Q Consensus 57 dgh~~~VIa~DG~~v--~P~~v~~l~l~~GqR~dvlv~~~~ 95 (377)
..++++|..+++..- .|+....+.|.+|..|.+++.-..
T Consensus 43 G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 43 GTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred ceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCC
Confidence 345666655555533 245566777777777777776654
No 67
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=76.59 E-value=21 Score=31.17 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=53.9
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|+.+++.+... +..|.|.+.....+ +|.+ ||....+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~k-------------------------~d~~---PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNLK-------------------------MDAI---PGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCce-------------------------eecC---CCceEEEEEEcC
Confidence 357889999999999875 45687777554322 2333 688899999999
Q ss_pred CceeeEeeechHHHH-hccceeEEEEeC
Q 017112 333 NPGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
.||.+-..|.-.-=. ...|-..++|.+
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~ 191 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVD 191 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEc
Confidence 999999999853321 245666676654
No 68
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=75.17 E-value=14 Score=31.09 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=51.7
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..+++.+... +..|.|.+-..... .|.+ ||....+.+.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgvK-------------------------~Dav---PGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITAT----DVIHSWSVPSLGIK-------------------------ADAI---PGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeC----ccceeeeccccCce-------------------------eecc---CCceEEEEEecC
Confidence 457889999999999875 45677776544322 2333 577778899999
Q ss_pred CceeeEeeechH---HHHhccceeEEEEeC
Q 017112 333 NPGVWFMHCHLE---LHTGWGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi~---~H~~~Gm~~~~~v~~ 359 (377)
.||.+...|.-. .| ..|-..+.|.+
T Consensus 121 ~~G~y~gqCsElCG~gH--s~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLH--GFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcchhcCcCc--cCceEEEEEeC
Confidence 999999999843 34 34666666544
No 69
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=74.61 E-value=18 Score=32.43 Aligned_cols=76 Identities=9% Similarity=0.171 Sum_probs=54.7
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
.+.+.++.|..|++.+.+. +..|.|.+-....+ . ..-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~----DViHsf~ip~~~~k-------------------------~---d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA----DVIHSWTVPSLGVK-------------------------V---DAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC----ccccceeccccCce-------------------------e---ECCCCcceeEEEEe
Confidence 3468899999999999985 45677776543322 1 33467888899999
Q ss_pred CCceeeEeeechHHHH-hccceeEEEEeC
Q 017112 332 DNPGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 332 d~pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
+.||.+...|.-.-.. ...|-..++|.+
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEEC
Confidence 9999999999865443 345666666654
No 70
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=74.03 E-value=13 Score=26.06 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=28.7
Q ss_pred EEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEE
Q 017112 31 MEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTN 88 (377)
Q Consensus 31 i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~d 88 (377)
+.+.+|+..+||.-... .|.+.+-.++|.. ||. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 67789999999854433 3777777887765 552 3334455555543
No 71
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=73.55 E-value=34 Score=27.61 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=44.3
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCcc-------CceEecEEEeCCCCEEEEEEEeCCC
Q 017112 30 AMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-------KPFTTEAILIAPGQTTNVLVQANQK 96 (377)
Q Consensus 30 ~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v-------~P~~v~~l~l~~GqR~dvlv~~~~~ 96 (377)
.|++...-.|||++-.-+ ..+|.|||.. ||..++..- .+.....+.|..|++|+|-|...+.
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 566755567999998444 5678899987 577776543 3556678999999999999998653
No 72
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=71.93 E-value=24 Score=24.86 Aligned_cols=66 Identities=11% Similarity=0.273 Sum_probs=38.3
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeCCCCCceeEEee
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 105 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~~g~y~l~~~ 105 (377)
.+.|+++.|+++++.+-+.+. +..|.|...+|..+....-.. =..+..--+-+.+. .+|.|.|++.
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 578999999998888866654 334777777765442211111 01122222333443 4689988864
No 73
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=71.48 E-value=39 Score=27.15 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=58.7
Q ss_pred eeeeecc-CceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCC-----CCCCCCCCCC---C-CCccceeeeCCC
Q 017112 253 RLSKIAF-NSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDP-----VKYPANYNLV---D-PIERNTAAVPTG 322 (377)
Q Consensus 253 ~~~~~~~-g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~-----~~~~~~~~~~---n-p~~rDtv~v~~~ 322 (377)
..+.++. ++.+.++|.|.+.+ |--.=||.+-|...+ .... ......-++. + -....|=.|.+|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~l-----pk~~MgHN~Vl~k~~--d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggG 88 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKL-----PKAVMGHNWVLAKSA--DMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGG 88 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcC-----chhccCccEEEeccc--cHHHHHHHHHhcccccCccCCCCcceEEEccccCCC
Confidence 3577776 58999999998643 222224444333222 1110 0000001111 1 224456688899
Q ss_pred CEEEEEEEcC--Ccee-eEeeechHHHHhccceeEEE
Q 017112 323 GWTAIRFRAD--NPGV-WFMHCHLELHTGWGLKTAFA 356 (377)
Q Consensus 323 ~~~~i~~~~d--~pG~-w~~HCHi~~H~~~Gm~~~~~ 356 (377)
+...|.|.+. .+|. |.|=|-.--|.. .|-|.+.
T Consensus 89 es~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 89 EKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred ceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 9999999986 5785 999999999986 6888774
No 74
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=70.52 E-value=35 Score=27.35 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=40.1
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCcc-CceEecEEEeCCCCEEEEEEEeCCCCC
Q 017112 30 AMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-KPFTTEAILIAPGQTTNVLVQANQKPG 98 (377)
Q Consensus 30 ~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v-~P~~v~~l~l~~GqR~dvlv~~~~~~g 98 (377)
.|++...-.|+|.+...+ ..+|.|||.. ||..++..- .+.....+.|..|++|.|-|...+..+
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 455544446999885433 4578888864 555544322 233345688899999999998765333
No 75
>PRK02888 nitrous-oxide reductase; Validated
Probab=66.67 E-value=23 Score=36.54 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=23.8
Q ss_pred EEEeCCCCEEEEEEEeCCCCCceeEEeecc
Q 017112 78 AILIAPGQTTNVLVQANQKPGRYFMAARPF 107 (377)
Q Consensus 78 ~l~l~~GqR~dvlv~~~~~~g~y~l~~~~~ 107 (377)
.+.+.|||...+-+++++ +|.||+....+
T Consensus 590 ~~dv~PG~t~svtF~adk-PGvy~~~Ctef 618 (635)
T PRK02888 590 NMEVAPQATASVTFTADK-PGVYWYYCTWF 618 (635)
T ss_pred cEEEcCCceEEEEEEcCC-CEEEEEECCcc
Confidence 356779999999999986 79999976654
No 76
>PRK02710 plastocyanin; Provisional
Probab=66.25 E-value=25 Score=27.89 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=37.9
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeCCCCCceeEEee
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 105 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~~g~y~l~~~ 105 (377)
+..+++++|++++| +|.... ..++.++ +. .......+.+.+|+.+++-++. +|.|.....
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~----------~~--~~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKLA-PHNAVFD----------GA--KELSHKDLAFAPGESWEETFSE---AGTYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCCC-CceEEec----------CC--ccccccccccCCCCEEEEEecC---CEEEEEEcC
Confidence 56899999998665 576532 3344443 21 1122334678999999976653 688877654
No 77
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=65.90 E-value=52 Score=24.40 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=42.5
Q ss_pred EEEeCCCEEE--EEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEE-EeCCCCEEEEEEEeCC-CCCceeEEeec
Q 017112 31 MEVESGKTYL--LRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAI-LIAPGQTTNVLVQANQ-KPGRYFMAARP 106 (377)
Q Consensus 31 i~v~pG~~yR--lRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l-~l~~GqR~dvlv~~~~-~~g~y~l~~~~ 106 (377)
-.+.+|+..+ +.+-|.|....-.+.+. +-.||..+ ....| .|++|+...+-+.... .+|.|.+++..
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 3467777765 77899987654444332 23455554 44445 7899999998888754 57889888765
Q ss_pred cC
Q 017112 107 FN 108 (377)
Q Consensus 107 ~~ 108 (377)
..
T Consensus 84 D~ 85 (101)
T PF07705_consen 84 DP 85 (101)
T ss_dssp ST
T ss_pred ee
Confidence 43
No 78
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=63.89 E-value=48 Score=23.84 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=30.8
Q ss_pred EeCCCE--EEEEEEecCCCCe--EEEEEcCceEEEEEeCCCcc--CceEecEEEeCCCCEEEEEEEe--CC--CCCceeE
Q 017112 33 VESGKT--YLLRIINAALNDE--LFFAIAGHNFTVVEVDAVYT--KPFTTEAILIAPGQTTNVLVQA--NQ--KPGRYFM 102 (377)
Q Consensus 33 v~pG~~--yRlRlINa~~~~~--~~~~idgh~~~VIa~DG~~v--~P~~v~~l~l~~GqR~dvlv~~--~~--~~g~y~l 102 (377)
|++|+. +++.+-|.+.... +.++++ .=+|=-+ .|..+. .|.+||...+-++. +. .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 456755 4588889886432 333332 2333222 344444 78999776665555 33 4689998
Q ss_pred Eeec
Q 017112 103 AARP 106 (377)
Q Consensus 103 ~~~~ 106 (377)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
No 79
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=63.78 E-value=22 Score=31.81 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=52.1
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..|++.+...+ ..|+|.+- +.+ ..+|.+ ||....+.|+++
T Consensus 139 nel~lP~g~pV~~~ltS~D----ViHSF~VP-------~l~------------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VMNSFFIP-------QLG------------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hhhhhhhh-------hcC------------------CeeecC---CCceEEEEEEeC
Confidence 3578999999999999864 45666554 221 134555 688889999999
Q ss_pred CceeeEeeech---HHHHhccceeEEEEeC
Q 017112 333 NPGVWFMHCHL---ELHTGWGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi---~~H~~~Gm~~~~~v~~ 359 (377)
.||.|.-.|-- ..| ..|...+.|.+
T Consensus 187 ~~G~y~g~CaE~CG~~H--a~M~~~V~v~~ 214 (226)
T TIGR01433 187 EPGVYDGISANYSGPGF--SGMKFKAIATD 214 (226)
T ss_pred CCEEEEEEchhhcCcCc--cCCeEEEEEEC
Confidence 99999999973 234 45666666654
No 80
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=63.07 E-value=22 Score=31.66 Aligned_cols=76 Identities=13% Similarity=-0.004 Sum_probs=51.5
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..|++.+... +..|+|.+- +.+ ..+|.+ ||....+.|+++
T Consensus 130 n~l~iP~g~~v~~~ltS~----DViHsf~vP-------~l~------------------~k~dai---PG~~~~~~~~~~ 177 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSA----DTMTSFWIP-------QLG------------------GQKYAM---TGMTMNWYLQAD 177 (217)
T ss_pred CcEEEECCCEEEEEEECC----chhhhhhch-------hhC------------------ceeecC---CCceEEEEEEeC
Confidence 457899999999999985 345665552 221 134555 688889999999
Q ss_pred CceeeEeeechHHH-HhccceeEEEEeCC
Q 017112 333 NPGVWFMHCHLELH-TGWGLKTAFAVEDG 360 (377)
Q Consensus 333 ~pG~w~~HCHi~~H-~~~Gm~~~~~v~~~ 360 (377)
.||.|--.|--.-= ...-|...+.|.+.
T Consensus 178 ~~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 178 QVGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred CCEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 99999999973211 12346666665543
No 81
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=62.23 E-value=15 Score=28.08 Aligned_cols=65 Identities=29% Similarity=0.421 Sum_probs=41.5
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCcc--CceE----ecEEEeCCCCEEEEEEEeCCCCCcee
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT--KPFT----TEAILIAPGQTTNVLVQANQKPGRYF 101 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v--~P~~----v~~l~l~~GqR~dvlv~~~~~~g~y~ 101 (377)
+..|+|++|++++ ++|... -+|++++.+ |+... +... -....+.+||.+++-++ .+|.|.
T Consensus 16 P~~i~V~~G~tV~--~~n~~~--------~~Hnv~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~ 81 (99)
T PF00127_consen 16 PSEITVKAGDTVT--FVNNDS--------MPHNVVFVA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYE 81 (99)
T ss_dssp SSEEEEETTEEEE--EEEESS--------SSBEEEEET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEE
T ss_pred CCEEEECCCCEEE--EEECCC--------CCceEEEec-ccccccccccccCccccceecCCCCEEEEEeC---CCeEEE
Confidence 5689999998764 566522 235555544 44321 1111 15678999999999777 368888
Q ss_pred EEeec
Q 017112 102 MAARP 106 (377)
Q Consensus 102 l~~~~ 106 (377)
....+
T Consensus 82 y~C~P 86 (99)
T PF00127_consen 82 YYCTP 86 (99)
T ss_dssp EEETT
T ss_pred EEcCC
Confidence 77653
No 82
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=58.81 E-value=66 Score=24.15 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=41.3
Q ss_pred EeCCCEEEEEEE--ecCCCCeEEEEEcCc--eEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeCCC--CCceeEEeec
Q 017112 33 VESGKTYLLRII--NAALNDELFFAIAGH--NFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQK--PGRYFMAARP 106 (377)
Q Consensus 33 v~pG~~yRlRlI--Na~~~~~~~~~idgh--~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~--~g~y~l~~~~ 106 (377)
-+||+++.+|++ +..+ . + -...++ .++|..-+|..+.-... ........++.-+.+++. .|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~-~-~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D-F-KPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T-C-SCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c-c-ccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 589999999999 6662 1 0 112233 45666666665422111 245678888888888763 5899998875
No 83
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=58.53 E-value=40 Score=30.24 Aligned_cols=76 Identities=13% Similarity=0.237 Sum_probs=53.7
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
.+.+.++.|..+++.+.+. +..|.|.+.+...+ .|. -||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~vP~~~~k-------------------------~da---iPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAA----DVIHSWTVPSLGVK-------------------------VDA---VPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeC----CccccccccccCcc-------------------------eec---CCCceEEEEEEe
Confidence 3468899999999999985 45677766554332 233 368888889999
Q ss_pred CCceeeEeeechHHHH-hccceeEEEEeC
Q 017112 332 DNPGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 332 d~pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
+.||.+...|.-.-.. ..-|-..+++.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 9999999999854433 245656666544
No 84
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=58.26 E-value=93 Score=24.73 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=45.2
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeCCCCCceeEEeecc
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPF 107 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~~g~y~l~~~~~ 107 (377)
...+.++.|+++||+|-+... ..-|.|++..+. +.+-||+.-.+-+++++ +|.|+++...+
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~-~G~y~~~C~e~ 105 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV--IHSFWIPELGIK----------------MDAIPGRTNSVTFTPDK-PGTYYGQCAEY 105 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEESS-SEEEEEEE-SS
T ss_pred cceecccccceEeEEEEcCCc--cccccccccCcc----------------cccccccceeeeeeecc-CCcEEEcCccc
Confidence 458999999999999988654 445666665433 34457888888888875 79999988755
Q ss_pred CC
Q 017112 108 ND 109 (377)
Q Consensus 108 ~~ 109 (377)
.+
T Consensus 106 CG 107 (120)
T PF00116_consen 106 CG 107 (120)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 85
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=57.63 E-value=39 Score=33.33 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=29.5
Q ss_pred eeeeCCCCEEEEEEEcCCceeeEeeechHHH-HhccceeEEEE
Q 017112 316 TAAVPTGGWTAIRFRADNPGVWFMHCHLELH-TGWGLKTAFAV 357 (377)
Q Consensus 316 tv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H-~~~Gm~~~~~v 357 (377)
.+.+.|....++-|.++-||.|++-|--.-| +.+-|.+..+|
T Consensus 593 ~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rmlv 635 (637)
T COG4263 593 NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRMLV 635 (637)
T ss_pred EEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccceee
Confidence 4567788889999999999999987754444 23344444444
No 86
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=52.34 E-value=58 Score=29.48 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=53.2
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..+++.+... +..|.|.+-.... .+|.+ ||....+.|.++
T Consensus 151 n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgv-------------------------K~Dai---PG~~n~~~~~~~ 198 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA----DVLHSFAVPSLGL-------------------------KIDAV---PGRLNQTGFFIK 198 (240)
T ss_pred ceEEEecCCEEEEEEEcC----CcccceeecccCc-------------------------eeecC---CCcceeEEEEcC
Confidence 468899999999999985 4568777755432 23444 577778889999
Q ss_pred CceeeEeeechHHHH-hccceeEEEEeC
Q 017112 333 NPGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
.||.+.-.|.-.--. ..-|-..++|.+
T Consensus 199 ~~G~y~g~C~e~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 199 RPGVFYGQCSEICGANHSFMPIVIEAVS 226 (240)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 999999999854433 244666666554
No 87
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=52.10 E-value=51 Score=29.46 Aligned_cols=76 Identities=12% Similarity=0.223 Sum_probs=51.8
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
.+.+.++.|..+++.+... +..|.|.+-.... .+|.+ ||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf~vP~l~~-------------------------K~Dai---PG~~n~~~~~~ 186 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAA----DVLHSWTVPSLGV-------------------------KIDAV---PGRLNQVGFFI 186 (226)
T ss_pred CceEEEecCCEEEEEEecC----ccccceeccccCc-------------------------cccCC---CCcEEEEEEEc
Confidence 3568899999999999875 4567666543211 34555 58888899999
Q ss_pred CCceeeEeeechHHHH-hccceeEEEEeC
Q 017112 332 DNPGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 332 d~pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
+.||.+.-.|--.-=. ..-|-..+++.+
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 187 NRPGVFYGQCSEICGANHSFMPIVVEAIS 215 (226)
T ss_pred CCCEEEEEEChhhcCcCcCCCeEEEEEeC
Confidence 9999999999743222 234555555543
No 88
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.85 E-value=59 Score=29.19 Aligned_cols=74 Identities=8% Similarity=0.196 Sum_probs=51.7
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..+++.+... +..|.|.+..... .+|.+ ||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~----DViHsf~iP~lg~-------------------------k~dai---PG~~~~~~~~~~ 187 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSA----DVLHSWAVPSLGV-------------------------KMDAV---PGRLNQTTFFIS 187 (229)
T ss_pred ceEEEecCeEEEEEEEEC----CccccccccccCc-------------------------eeecC---CCceEEEEEEcC
Confidence 467899999999999985 4567776654322 23444 578888899999
Q ss_pred CceeeEeeechHHHHhc-cceeEEEEe
Q 017112 333 NPGVWFMHCHLELHTGW-GLKTAFAVE 358 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~~~-Gm~~~~~v~ 358 (377)
.||.+...|.-.--... -|-..+++.
T Consensus 188 ~~G~~~g~Cse~CG~~Hs~M~~~v~vv 214 (229)
T MTH00038 188 RTGLFYGQCSEICGANHSFMPIVIESV 214 (229)
T ss_pred CCEEEEEEcccccCcCcCCCeEEEEEe
Confidence 99999999985443333 344444444
No 89
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=47.95 E-value=74 Score=28.55 Aligned_cols=43 Identities=23% Similarity=0.354 Sum_probs=31.5
Q ss_pred eEEEEeCCCEEEEEEEecCCCCeE--EEEEcCceEEEEEeCCCccCc
Q 017112 29 FAMEVESGKTYLLRIINAALNDEL--FFAIAGHNFTVVEVDAVYTKP 73 (377)
Q Consensus 29 ~~i~v~pG~~yRlRlINa~~~~~~--~~~idgh~~~VIa~DG~~v~P 73 (377)
..+-+++| +|.||+|..+-...- ..-| +--++++|+|+.+.+-
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I-~NGeYl~aTd~rytqT 138 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNI-DNGEYLYATDNRYTQT 138 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEe-CCceEEEEcCCceeEE
Confidence 35778998 799999998754432 2344 4458999999999853
No 90
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=47.86 E-value=75 Score=28.49 Aligned_cols=75 Identities=8% Similarity=0.220 Sum_probs=51.2
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..+++.+... +..|.|.+-.... ..|.+ ||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~----DViHsf~ip~lg~-------------------------k~dai---PG~~~~~~~~~~ 187 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSE----DVLHSWAVPSLGL-------------------------KTDAI---PGRLNQTTLMST 187 (227)
T ss_pred ceEEecCCCEEEEEEEEC----ccccccccccccc-------------------------ceecC---CCceEEEEEecC
Confidence 467899999999999985 4456655533221 22433 678888999999
Q ss_pred CceeeEeeechHHHHh-ccceeEEEEeC
Q 017112 333 NPGVWFMHCHLELHTG-WGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 359 (377)
.||.+..-|.-.-... .-|-..+++.+
T Consensus 188 ~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 188 RPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CcEEEEEECccccCcCcCCceEEEEEeC
Confidence 9999999998644332 34555555543
No 91
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=46.87 E-value=78 Score=30.68 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=27.5
Q ss_pred eeCCCCEEEEEEEcCCceeeEeeechHHHHhccceeEEEEeCC
Q 017112 318 AVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDG 360 (377)
Q Consensus 318 ~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 360 (377)
.|.||....+.+.. .||.|-|+| ..| ..|-+.|.|..+
T Consensus 81 nIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 81 NIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGKLIVKGE 118 (375)
T ss_pred ccCCCCceEEEEec-CCceEEeec--CcC--CCCCceEEEeCC
Confidence 67777666665555 599999999 446 456888888743
No 92
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=46.24 E-value=48 Score=24.98 Aligned_cols=28 Identities=18% Similarity=0.410 Sum_probs=15.2
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEEeCC
Q 017112 38 TYLLRIINAALNDELFFAIAGHNFTVVEVDA 68 (377)
Q Consensus 38 ~yRlRlINa~~~~~~~~~idgh~~~VIa~DG 68 (377)
.|++||-|.+... +.|-.....|...||
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g 42 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADG 42 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCC
Confidence 4889999998873 333333444444444
No 93
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=45.89 E-value=63 Score=25.33 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=27.1
Q ss_pred EEEEEEEecCCCC-eEEEEEcCc-eEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeC
Q 017112 38 TYLLRIINAALND-ELFFAIAGH-NFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 38 ~yRlRlINa~~~~-~~~~~idgh-~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
.|+|+|+|-+... .|.++++|. .+++. . ....+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEEE
Confidence 5899999998654 467777764 23330 1 23578889998887766653
No 94
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.54 E-value=84 Score=28.30 Aligned_cols=76 Identities=11% Similarity=0.171 Sum_probs=51.9
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
.+.+.++.|+.+++.+.+. +..|.|.+-....+ .|.+ ||....+.|.+
T Consensus 143 dn~lvlP~~~~v~~~itS~----DViHsf~vp~lg~k-------------------------~dai---PG~~~~~~~~~ 190 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAA----DVLHSFAVPSLSVK-------------------------IDAV---PGRLNQTSFFI 190 (234)
T ss_pred ceEEEEecCcEEEEEEEeC----chhccccccccCce-------------------------eEcc---CCceEeEEEEe
Confidence 3468899999999999985 45677666443222 2333 57778888999
Q ss_pred CCceeeEeeechHHHH-hccceeEEEEeC
Q 017112 332 DNPGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 332 d~pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
+.||.+---|.-.--. ..-|-..+++.+
T Consensus 191 ~~~G~y~g~Cse~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 191 KRPGVFYGQCSEICGANHSFMPIVIEGVS 219 (234)
T ss_pred CCCEEEEEEChhhcCcccccCeeEEEEEC
Confidence 9999999999853322 244555555544
No 95
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=43.82 E-value=62 Score=30.58 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=50.2
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..|++.+...+ ..|+|.+-.-.. ..|.+ ||-...+.|.++
T Consensus 151 NeL~iP~g~pV~f~lTS~D----ViHSF~IP~Lg~-------------------------K~dam---PG~~n~l~~~a~ 198 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNS----VMNSFFIPRLGS-------------------------QIYAM---AGMQTRLHLIAN 198 (315)
T ss_pred ccEEEecCCEEEEEEEEch----hhhhhhhhhhCC-------------------------eeecC---CCceeEEEEEcC
Confidence 4578999999999999864 446655542211 23433 578889999999
Q ss_pred CceeeEeeechHHH-HhccceeEEEEe
Q 017112 333 NPGVWFMHCHLELH-TGWGLKTAFAVE 358 (377)
Q Consensus 333 ~pG~w~~HCHi~~H-~~~Gm~~~~~v~ 358 (377)
.||.|.-.|--.-= -...|...+.+.
T Consensus 199 ~~G~Y~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 199 EPGTYDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred CCEEEEEEChhhcCccccCCeEEEEEE
Confidence 99999999974221 124565555554
No 96
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.43 E-value=84 Score=28.16 Aligned_cols=75 Identities=12% Similarity=0.251 Sum_probs=51.6
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..+++.+... +..|.|-+-.... .+|.+ ||....+.|.++
T Consensus 140 n~l~lP~~~~v~~~~tS~----DViHsf~vp~l~~-------------------------k~dav---PG~~~~~~~~~~ 187 (227)
T MTH00154 140 NRLVLPMNTQIRILITAA----DVIHSWTVPSLGV-------------------------KVDAV---PGRLNQLNFLIN 187 (227)
T ss_pred ceEEEecCCEEEEEEEcC----chhhheeccccCC-------------------------eeecC---CCceEEEEEEEc
Confidence 467899999999999875 4567666544221 23444 688888999999
Q ss_pred CceeeEeeechHHH-HhccceeEEEEeC
Q 017112 333 NPGVWFMHCHLELH-TGWGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi~~H-~~~Gm~~~~~v~~ 359 (377)
.||.+.-.|.-.-= -..-|-..+++.+
T Consensus 188 ~~G~y~g~Cse~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 188 RPGLFFGQCSEICGANHSFMPIVIESVS 215 (227)
T ss_pred CceEEEEEeechhCcCccCCeEEEEEeC
Confidence 99999999984321 1244656665543
No 97
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.06 E-value=1.3e+02 Score=27.04 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=51.0
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..+++.+...+ ..|.|-+ -+.| ...|.+ ||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViHsf~i-------p~~~------------------~k~da~---PG~~~~~~~~~~ 187 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED----VLHSWAV-------PALG------------------VKMDAV---PGRLNQTAFIAS 187 (230)
T ss_pred ceEEEecCcEEEEEEEeCc----cccceec-------cccC------------------CccccC---CCceEEEEEEeC
Confidence 4678999999999999853 4555444 3322 023433 688888899999
Q ss_pred CceeeEeeechHHHH-hccceeEEEEeC
Q 017112 333 NPGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
.||.+-..|.-.--. ...|-..++|.+
T Consensus 188 ~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 188 RPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CceEEEEEChhhccccccCCcEEEEEEC
Confidence 999999999863322 245666666554
No 98
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=43.06 E-value=1.4e+02 Score=22.39 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=36.6
Q ss_pred EEeCCCEEE--EEEEecCCCC-eEEEEEcCc---eEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeC-C-CCCcee
Q 017112 32 EVESGKTYL--LRIINAALND-ELFFAIAGH---NFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN-Q-KPGRYF 101 (377)
Q Consensus 32 ~v~pG~~yR--lRlINa~~~~-~~~~~idgh---~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~-~-~~g~y~ 101 (377)
.+..|++|. +.|.|.|... .|++..... .|.| +| ..-.|+||+..++-|++. . ..|.|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 366777774 9999998753 344444331 1111 22 234699999999999987 3 346654
No 99
>COG1470 Predicted membrane protein [Function unknown]
Probab=42.22 E-value=2e+02 Score=28.76 Aligned_cols=75 Identities=19% Similarity=0.364 Sum_probs=49.3
Q ss_pred eeEEEEeCC--CEEEEEEEecCCCC--eEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCE--EEEEEEeCC--CCCc
Q 017112 28 TFAMEVESG--KTYLLRIINAALND--ELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQT--TNVLVQANQ--KPGR 99 (377)
Q Consensus 28 ~~~i~v~pG--~~yRlRlINa~~~~--~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR--~dvlv~~~~--~~g~ 99 (377)
...+++.+| +..|++|-|.|+.. -+.+.|++-.=|=|++|+..+ +. |.||+| +++-|+++. .+|+
T Consensus 388 ~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 388 PYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred cEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCCc
Confidence 467888888 45689999998653 456777776667788887633 22 345555 455555554 4689
Q ss_pred eeEEeeccCC
Q 017112 100 YFMAARPFND 109 (377)
Q Consensus 100 y~l~~~~~~~ 109 (377)
|.++.....+
T Consensus 461 Y~i~i~~ksD 470 (513)
T COG1470 461 YRITITAKSD 470 (513)
T ss_pred EEEEEEEeec
Confidence 9988776443
No 100
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=41.93 E-value=88 Score=28.05 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=36.5
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeC
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
+|.++++||+++.+|++..+. +-.|.-.+.-+-++..+-++.....|.|+...|.=+.++..
T Consensus 75 PPl~rl~pg~~q~vRii~~~~-----lp~drEs~f~l~v~~IP~~~~~~~~l~ia~r~~iklfyRP~ 136 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKSG-----SPLNTEHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQPA 136 (230)
T ss_pred CCeEEECCCCceEEEEEECCC-----CCCCeeEEEEEEEEEcCCCCCCCCEEEEEEEeEEEEEEeCC
Confidence 578899999999999997753 11233333333444444322223356666666666666543
No 101
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=41.34 E-value=1.1e+02 Score=24.34 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=41.0
Q ss_pred EEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEe----cEEEeCCCCEEEEEEEeCC--CCCceeEEee
Q 017112 32 EVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTT----EAILIAPGQTTNVLVQANQ--KPGRYFMAAR 105 (377)
Q Consensus 32 ~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v----~~l~l~~GqR~dvlv~~~~--~~g~y~l~~~ 105 (377)
.++.|+..++|+-=......-.+.+ .+.|...||..+--... ..+....++++.+.++++. .+|.|.|...
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~~---~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPVF---GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEEE---EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccEE---EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 4677777777765444433333333 56777778866621111 2444444999999999876 4799999876
Q ss_pred c
Q 017112 106 P 106 (377)
Q Consensus 106 ~ 106 (377)
.
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 5
No 102
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.98 E-value=1.6e+02 Score=26.49 Aligned_cols=76 Identities=11% Similarity=0.190 Sum_probs=51.4
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
.+.+.++.|..+++.+... +..|.|.+-+...+ .|.+ ||....+.+.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lg~k-------------------------~dai---PG~~~~~~~~~ 186 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAE----DVLHSWTVPALGVK-------------------------MDAV---PGRLNQATFII 186 (230)
T ss_pred CCeEEEecCCEEEEEEEcC----cccccccccccCce-------------------------eEec---CCceEEEEEEe
Confidence 3467899999999999875 44566655443222 2333 57778888999
Q ss_pred CCceeeEeeechHHHHh-ccceeEEEEeC
Q 017112 332 DNPGVWFMHCHLELHTG-WGLKTAFAVED 359 (377)
Q Consensus 332 d~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 359 (377)
+.||.+.-.|.-.-... .-|-..+++.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 187 SRPGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCcEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 99999999998644332 34555555443
No 103
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=39.38 E-value=1.5e+02 Score=25.57 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=48.6
Q ss_pred CceeEEEEeCCCEEEEEEEecCCCCeEEEEE-cCc----eEEEEEeCCCcc-CceEecEE----EeCCCCEEEEEEEeCC
Q 017112 26 KHTFAMEVESGKTYLLRIINAALNDELFFAI-AGH----NFTVVEVDAVYT-KPFTTEAI----LIAPGQTTNVLVQANQ 95 (377)
Q Consensus 26 ~~~~~i~v~pG~~yRlRlINa~~~~~~~~~i-dgh----~~~VIa~DG~~v-~P~~v~~l----~l~~GqR~dvlv~~~~ 95 (377)
...++|-+..|-++.+-|+|.... ..++.| ..- .--.++.||..+ .+=....+ -|..||+.+.+.+.-
T Consensus 82 ~G~mtIyiPaGw~V~V~f~N~e~~-pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~- 159 (195)
T TIGR03094 82 YGAMTIYLPAGWNVYVTFTNYESL-PHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDT- 159 (195)
T ss_pred CCceEEEEeCCCEEEEEEEcCCCC-CccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccC-
Confidence 346899999999899999999843 444444 111 122355666443 11111122 246899988777765
Q ss_pred CCCceeEEee
Q 017112 96 KPGRYFMAAR 105 (377)
Q Consensus 96 ~~g~y~l~~~ 105 (377)
.+|.||+...
T Consensus 160 ~~G~YwlvCg 169 (195)
T TIGR03094 160 SAGKYWLVCG 169 (195)
T ss_pred CCeeEEEEcc
Confidence 4799999753
No 104
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=39.27 E-value=1.4e+02 Score=24.64 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=43.7
Q ss_pred CEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEe-------cEEEeCCCCEE-EEEEEeCCCCCceeEEee
Q 017112 37 KTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTT-------EAILIAPGQTT-NVLVQANQKPGRYFMAAR 105 (377)
Q Consensus 37 ~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v-------~~l~l~~GqR~-dvlv~~~~~~g~y~l~~~ 105 (377)
.+|-|-+=|.|.. .+.++...++|+ +||+.+.|..+ +.+.|.|||=- .+.|.-.- .|.--+...
T Consensus 70 ~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~l-SGyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEAL-SGYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCC-CcceEEEEE
Confidence 3577778888865 366788899998 99999877544 36779999976 55554432 354444443
No 105
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.15 E-value=1.2e+02 Score=27.10 Aligned_cols=75 Identities=13% Similarity=0.229 Sum_probs=50.9
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..+++.+... +..|.|.+-.... .+|.+ ||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~----DViHsf~vP~lg~-------------------------K~Dav---PG~~n~~~~~~~ 187 (227)
T MTH00117 140 HRMVIPMESPIRILITAE----DVLHSWAVPSLGV-------------------------KTDAV---PGRLNQTSFITT 187 (227)
T ss_pred ceEEEecCceEEEEEEec----chhhcccccccCc-------------------------eeEec---CCceEEEEEEEc
Confidence 468899999999999985 4456655533221 23444 588888899999
Q ss_pred CceeeEeeechHHHHh-ccceeEEEEeC
Q 017112 333 NPGVWFMHCHLELHTG-WGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 359 (377)
.||.+.-.|--.--.. .-|-..+++.+
T Consensus 188 ~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 188 RPGVFYGQCSEICGANHSFMPIVVESVP 215 (227)
T ss_pred ccceEEEEeccccccCccCCeEEEEEcC
Confidence 9999999998543332 34555555443
No 106
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.82 E-value=1.1e+02 Score=24.82 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=26.6
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccC----ceEecEEEeCCCCEEE
Q 017112 38 TYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTK----PFTTEAILIAPGQTTN 88 (377)
Q Consensus 38 ~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~----P~~v~~l~l~~GqR~d 88 (377)
.|++||-|-+... +.+-+....|...||...+ -+--..=.|.|||.+.
T Consensus 32 ~Y~ItI~N~~~~~---vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~ 83 (127)
T PRK05461 32 AYTITIENLGRVP---VQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFE 83 (127)
T ss_pred EEEEEEEECCCCC---EEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeE
Confidence 3789999987642 4454556666666654221 1111223577777654
No 107
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=37.63 E-value=39 Score=22.12 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCCCccceee-eCCCCEEEEEEEcCCceeeEeeechHHHHhc
Q 017112 309 VDPIERNTAA-VPTGGWTAIRFRADNPGVWFMHCHLELHTGW 349 (377)
Q Consensus 309 ~np~~rDtv~-v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~ 349 (377)
..|..+-+.. .+.|+...+.++...-..+=+||....|.+.
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3444444333 4568889999999999999999999999753
No 108
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=36.03 E-value=45 Score=30.42 Aligned_cols=61 Identities=8% Similarity=0.185 Sum_probs=35.6
Q ss_pred eeEEEEeCCCEEEEEEEecCC-------CCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeC
Q 017112 28 TFAMEVESGKTYLLRIINAAL-------NDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~-------~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
+|.++++||+++.+||+..+. ...|+|.+...+-. ..+. ...-..|.|+...|.=+.++..
T Consensus 85 PPlfrl~p~~~q~lRI~~~~~~~lP~DRESlf~lnv~eIP~~--~~~~----~~~~n~l~ialr~~IKLFyRP~ 152 (253)
T PRK15249 85 PPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVPPT--NIGS----DSGQNKMLVMLRSRIKLFYRPD 152 (253)
T ss_pred CCeEEecCCCceEEEEEEcCCCCCCCCceEEEEEEeeecCCC--Cccc----ccccceEEEEeeeEEEEEEccc
Confidence 578999999999999998863 23455655444310 0000 0011246666666666666543
No 109
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=35.10 E-value=22 Score=28.94 Aligned_cols=37 Identities=32% Similarity=0.527 Sum_probs=27.8
Q ss_pred EeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCcc
Q 017112 33 VESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT 71 (377)
Q Consensus 33 v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v 71 (377)
-+.|.++||||+.--...- |-=..|.++|.++|.+++
T Consensus 120 Y~~GaRVrlRl~DlELs~r--FLGs~~D~T~LEAdavLl 156 (173)
T KOG4078|consen 120 YQKGARVRLRLIDLELSER--FLGSKHDLTLLEADAVLL 156 (173)
T ss_pred hhcCceEEEEEcChhHhhh--hhcCCccceEEecceeee
Confidence 5678999999998754322 222468999999999877
No 110
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.78 E-value=1.5e+02 Score=26.69 Aligned_cols=75 Identities=15% Similarity=0.246 Sum_probs=53.0
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
.+...++.|..+++.+... +..|.|.+-.-.. .+|.+ ||..-.+.|.+
T Consensus 142 dn~l~lP~~~~v~~~itS~----DViHSf~vP~lg~-------------------------K~Dav---PGr~n~~~~~~ 189 (231)
T MTH00080 142 DNRCVLPCDTNIRFCITSS----DVIHSWALPSLSI-------------------------KMDAM---SGILSTLCYSF 189 (231)
T ss_pred eCceEeecCcEEEEEEEeC----cccccccccccCc-------------------------eeecc---CCceEEEEEEE
Confidence 3457899999999999985 4567776644322 23544 57778888999
Q ss_pred CCceeeEeeech---HHHHhccceeEEEEeCC
Q 017112 332 DNPGVWFMHCHL---ELHTGWGLKTAFAVEDG 360 (377)
Q Consensus 332 d~pG~w~~HCHi---~~H~~~Gm~~~~~v~~~ 360 (377)
+.||.+.-.|-- ..| ..|-..+++.+.
T Consensus 190 ~~~G~y~g~CsE~CG~~H--s~M~~~v~vv~~ 219 (231)
T MTH00080 190 PMPGVFYGQCSEICGANH--SFMPIAVEVTLL 219 (231)
T ss_pred cCceEEEEEehhhcCcCc--cCCEEEEEEECH
Confidence 999999999983 234 456666666543
No 111
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=34.33 E-value=2e+02 Score=25.05 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=22.4
Q ss_pred EEEeCCCCEEEEEEEeCCCCCceeEEeeccC
Q 017112 78 AILIAPGQTTNVLVQANQKPGRYFMAARPFN 108 (377)
Q Consensus 78 ~l~l~~GqR~dvlv~~~~~~g~y~l~~~~~~ 108 (377)
.+..-||..-.+-+++++ +|.|..+...+.
T Consensus 148 k~da~PG~~~~~~~~~~~-~G~y~~~c~e~c 177 (201)
T TIGR02866 148 KIDAIPGQYNALWFNADE-PGVYYGYCAELC 177 (201)
T ss_pred eEEecCCcEEEEEEEeCC-CEEEEEEehhhC
Confidence 355668888888888875 799998876544
No 112
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=34.15 E-value=46 Score=30.20 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=18.7
Q ss_pred eeEEEEeCCCEEEEEEEecCC
Q 017112 28 TFAMEVESGKTYLLRIINAAL 48 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~ 48 (377)
+|.++++||++..+||+..+.
T Consensus 81 PPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 81 PPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred CCeEEECCCCccEEEEEeCCC
Confidence 568899999999999998875
No 113
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.91 E-value=2.4e+02 Score=25.26 Aligned_cols=75 Identities=13% Similarity=0.241 Sum_probs=51.3
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..+++.+... +..|.|.+-...+ ..|.+ ||....+.|.++
T Consensus 140 n~l~lP~~~~v~~~~tS~----DViHsf~vP~lg~-------------------------k~da~---PG~~n~~~~~~~ 187 (228)
T MTH00076 140 NRMVVPMESPIRMLITAE----DVLHSWAVPSLGI-------------------------KTDAI---PGRLNQTSFIAS 187 (228)
T ss_pred ceEEEecCCEEEEEEEec----cccccccccccCc-------------------------eEEcc---CCcceeEEEEeC
Confidence 468899999999999985 4567666543322 22333 577788889999
Q ss_pred CceeeEeeechHHHH-hccceeEEEEeC
Q 017112 333 NPGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
.||.+---|.-.-.. ...|-..+++.+
T Consensus 188 ~~G~~~g~C~e~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 188 RPGVYYGQCSEICGANHSFMPIVVEATP 215 (228)
T ss_pred CcEEEEEEChhhcCccccCCceEEEEeC
Confidence 999999999863332 245555555543
No 114
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=33.61 E-value=1.4e+02 Score=29.65 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=32.6
Q ss_pred CEEEEEEEecCCC-CeEEEEEcCceEEEEEeCCCccC-ceEecEEEeCCCCEEEEEEEeC
Q 017112 37 KTYLLRIINAALN-DELFFAIAGHNFTVVEVDAVYTK-PFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 37 ~~yRlRlINa~~~-~~~~~~idgh~~~VIa~DG~~v~-P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
..|+++|+|.+.. ..|.|+++|.+ |.-++ +. +.+.|.+||+.++-|...
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~~~--~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLP-------GIKIEGPG--APIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCC-------CcEEEcCC--ceEEECCCCEEEEEEEEE
Confidence 3589999998754 46777777642 21111 11 278999999987777654
No 115
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.10 E-value=50 Score=27.26 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=20.8
Q ss_pred eeCCCCEEEEEEE-cCCc---eeeEeeech
Q 017112 318 AVPTGGWTAIRFR-ADNP---GVWFMHCHL 343 (377)
Q Consensus 318 ~v~~~~~~~i~~~-~d~p---G~w~~HCHi 343 (377)
.|+||..+.|.|+ ..|| |.|.|+|-.
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5789999999995 4465 899999864
No 116
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.08 E-value=1.4e+02 Score=26.68 Aligned_cols=76 Identities=12% Similarity=0.230 Sum_probs=51.5
Q ss_pred eeeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEc
Q 017112 252 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 331 (377)
Q Consensus 252 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~ 331 (377)
.+.+.++.|..+++.+... +..|.|.+-.... ..|.+ ||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf~vP~lg~-------------------------k~dai---PG~~n~~~~~~ 186 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSA----DVLHSWTLPSLGL-------------------------KMDAV---PGRLNQLAFLS 186 (225)
T ss_pred cceEEEecCCEEEEEEEeC----Chhhccccccccc-------------------------cccCC---CCeEEEEEEEc
Confidence 3467899999999999985 4567766643211 23444 67888899999
Q ss_pred CCceeeEeeechHHHH-hccceeEEEEeC
Q 017112 332 DNPGVWFMHCHLELHT-GWGLKTAFAVED 359 (377)
Q Consensus 332 d~pG~w~~HCHi~~H~-~~Gm~~~~~v~~ 359 (377)
+.||.+---|.-.-=. ..-|-..++|.+
T Consensus 187 ~~~G~~~g~CsE~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 187 SRPGSFYGQCSEICGANHSFMPIVVEFVP 215 (225)
T ss_pred CCCEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 9999999999843211 234555555543
No 117
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=32.44 E-value=58 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=23.9
Q ss_pred eeEEEEeCCCEEEEEEEecCCC------CeEEEEEcCce
Q 017112 28 TFAMEVESGKTYLLRIINAALN------DELFFAIAGHN 60 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~------~~~~~~idgh~ 60 (377)
+|.++++||+++.+||+..+.. ..|+|.+...+
T Consensus 77 PPlfrl~p~~~q~lRIi~~~~~LP~DrESlf~Lnv~eIP 115 (229)
T PRK15195 77 PPLFVSEPKSENTLRIIYAGPPLAADRESLFWMNVKAIP 115 (229)
T ss_pred CCeEEECCCCceEEEEEECCCCCCCCeeEEEEEEeeecC
Confidence 5788999999999999998642 23555554443
No 118
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=31.51 E-value=88 Score=19.48 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=14.4
Q ss_pred eEEEEeCCCEEEEEEEecC
Q 017112 29 FAMEVESGKTYLLRIINAA 47 (377)
Q Consensus 29 ~~i~v~pG~~yRlRlINa~ 47 (377)
...-.-.|+.||||+-.++
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 4555678999999987654
No 119
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=29.86 E-value=1.7e+02 Score=26.12 Aligned_cols=63 Identities=6% Similarity=0.169 Sum_probs=34.5
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCce--EecEEEeCCCCEEEEEEEeC
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPF--TTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~--~v~~l~l~~GqR~dvlv~~~ 94 (377)
+|.++++||+++.+||+..+.. |--|.-.+.-+-+++.|=++. ..+.|.|+.-.|+=++.+..
T Consensus 72 PPl~rl~p~~~q~lRI~~~~~~----LP~DrEslf~lnv~~IP~~~~~~~~n~l~iair~rIKLFyRP~ 136 (226)
T PRK15295 72 PPLFRLDAGQKNSIRVIRSGAP----LPADRESMYWLNIKGIPSIDDNASANRVEISINTQIKLIYRPP 136 (226)
T ss_pred CCeEEECCCCceEEEEEECCCC----CCCCceEEEEEEEEEcCCCCCcCccceEEEEeeeeeeEEEchh
Confidence 5788999999999999998642 111222222222333322111 12346666666666666543
No 120
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.58 E-value=1.2e+02 Score=27.35 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=41.4
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCceEe---cEEEeCCCCEEEEEEEeCC
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTT---EAILIAPGQTTNVLVQANQ 95 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~~v---~~l~l~~GqR~dvlv~~~~ 95 (377)
+|.++++||+...+||+..+.. +--|.-.+.=+-+++.|-++... +.+.|+.=.|+-+.++.+.
T Consensus 80 PPv~rl~p~~~q~vRi~~~~~~----lP~drEslf~lnv~eIPp~~~~~~~~n~lq~a~r~riKlf~RP~~ 146 (235)
T COG3121 80 PPVFRLEPGQEQQLRILYTGNK----LPADRESLFRLNVDEIPPKSKDDKGPNVLQLALRSRIKLFYRPAG 146 (235)
T ss_pred CCeEEECCCCccEEEEEecCCC----CCCCceeEEEEEeeecCCCCcccCCcceEEEEeeeeeeEEECccc
Confidence 6899999999999999999952 22233333333445554432111 4477777777777777654
No 121
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=29.42 E-value=1.5e+02 Score=21.14 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=4.3
Q ss_pred EEeCCCEEEE
Q 017112 32 EVESGKTYLL 41 (377)
Q Consensus 32 ~v~pG~~yRl 41 (377)
.+++|++++|
T Consensus 25 ~l~~G~~~~~ 34 (77)
T PF13464_consen 25 TLKAGETKTF 34 (77)
T ss_pred eeCCCcEEEE
Confidence 3444444433
No 122
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=29.04 E-value=85 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=17.7
Q ss_pred eeEEEEeCCCEEEEEEEecCC
Q 017112 28 TFAMEVESGKTYLLRIINAAL 48 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~ 48 (377)
++.+.++||++..+||+..+.
T Consensus 55 Pp~~~L~pg~~q~vRv~~~~~ 75 (122)
T PF00345_consen 55 PPIFRLEPGESQTVRVYRGSK 75 (122)
T ss_dssp SSEEEEETTEEEEEEEEECSG
T ss_pred CCceEeCCCCcEEEEEEecCC
Confidence 568999999999999988544
No 123
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=28.89 E-value=1.5e+02 Score=26.75 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=36.1
Q ss_pred eeEEEEeCCCEEEEEEEecCCC-------CeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeC
Q 017112 28 TFAMEVESGKTYLLRIINAALN-------DELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~-------~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
+|.++++||+.+.|||+..+.. ..|+|.+.+.+= ++..-+.|.|+...|.=++.+..
T Consensus 84 PPlfrl~p~~~q~lRIi~~~~~~LP~DRESlf~lnv~~IPp----------~~~~~n~L~iair~riKLFyRP~ 147 (236)
T PRK11385 84 PPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPS----------GKVENQSVKVAMRSVFKLFWRPE 147 (236)
T ss_pred CCeEEECCCCceEEEEEECCCCCCCCCceEEEEEEEEecCC----------CcCCCceEEEEEEeeEEEEEccc
Confidence 5788999999999999998631 245555543321 11112357777777777777654
No 124
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=28.68 E-value=58 Score=22.18 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=30.1
Q ss_pred EEEEecCCCCeEEEEEcCce-EEEEEeCCCccCceEecEEEeCCCCEEEEEEEeC
Q 017112 41 LRIINAALNDELFFAIAGHN-FTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 41 lRlINa~~~~~~~~~idgh~-~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
.++-+.+....+.+.++++. ++..- .+.....+-|.+|+++-+.+++.
T Consensus 12 ~~ie~~g~~~~v~~~~~~~~~l~a~i------t~~~~~~L~L~~G~~V~~~ik~~ 60 (64)
T PF03459_consen 12 ESIENLGSEVEVTLDLGGGETLTARI------TPESAEELGLKPGDEVYASIKAS 60 (64)
T ss_dssp EEEEESSSEEEEEEEETTSEEEEEEE------EHHHHHHCT-STT-EEEEEE-GG
T ss_pred EEEEECCCeEEEEEEECCCCEEEEEE------cHHHHHHcCCCCCCEEEEEEehh
Confidence 45566666666777777766 44432 24445678899999999999875
No 125
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=27.51 E-value=1.8e+02 Score=25.90 Aligned_cols=62 Identities=11% Similarity=0.229 Sum_probs=34.0
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCce--EecEEEeCCCCEEEEEEEe
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPF--TTEAILIAPGQTTNVLVQA 93 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~--~v~~l~l~~GqR~dvlv~~ 93 (377)
+|.+++++|++..+||+..+.. +--|.-.+.-+-++..|-.+. .-+.|.|+...|+=+..+.
T Consensus 76 PPl~rl~p~~~q~lRI~~~~~~----lP~DrEslf~lnv~eIP~~~~~~~~n~l~iavr~riKLfyRP 139 (227)
T PRK15299 76 PPLFRLNGGQKNVLRIIRTGGN----LPEDRESLYWLDIKSIPSSNPDNKHNTLMLAVKAEFKLIYRP 139 (227)
T ss_pred CCeEEECCCCccEEEEEECCCC----CCCcceEEEEEEeEecCCCCcccccceEEEEEeeeeeEEEcc
Confidence 5788999999999999988741 112222333333333332111 1124566666666555543
No 126
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=27.41 E-value=1.1e+02 Score=27.44 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=35.6
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccCce---EecEEEeCCCCEEEEEEEeC
Q 017112 28 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPF---TTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~P~---~v~~l~l~~GqR~dvlv~~~ 94 (377)
+|.++++||+++.+||+..+.. +--|.-.+.-+-++..|=++. ..+.|.|+...|+=+.++..
T Consensus 73 PPl~rl~p~~~q~lRIi~~~~~----lP~DrESlf~lnv~eIP~~~~~~~~~n~l~ia~r~~IKlFyRP~ 138 (228)
T PRK15208 73 PPLFKLDPTKNNVLRIVNITNT----LPQDRESVYWINVKAIPAKSEDAENKNVLQIAVRTRLKLFYRPA 138 (228)
T ss_pred CCeEEECCCCccEEEEEECCCC----CCCCeeEEEEEEEEEcCCCCCCccccceEEEEeeeeeeEEEchh
Confidence 5788999999999999987642 122222333333444332211 12246666666666666543
No 127
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=26.24 E-value=75 Score=27.92 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=28.4
Q ss_pred cCceEEEEEeCCCcc-CceEecEEEeCCCCEEEEE
Q 017112 57 AGHNFTVVEVDAVYT-KPFTTEAILIAPGQTTNVL 90 (377)
Q Consensus 57 dgh~~~VIa~DG~~v-~P~~v~~l~l~~GqR~dvl 90 (377)
.+-+++|.-++|.-. -|++.++|.|++=+|-+|-
T Consensus 145 l~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~ 179 (215)
T COG3577 145 LDYTITVSTANGRARAAPVTLDRVQIGGIRVKNVD 179 (215)
T ss_pred cCCceEEEccCCccccceEEeeeEEEccEEEcCch
Confidence 467899999999888 6899999999988887653
No 128
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.07 E-value=2e+02 Score=26.40 Aligned_cols=75 Identities=8% Similarity=0.201 Sum_probs=51.5
Q ss_pred eeeeeccCceEEEEEeecCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceeeeCCCCEEEEEEEcC
Q 017112 253 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 332 (377)
Q Consensus 253 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHg~~f~vl~~g~g~~~~~~~~~~~~~~np~~rDtv~v~~~~~~~i~~~~d 332 (377)
+.+.++.|..+++.+... +..|.|.+-. .| ..+|.+ ||..-.+.|.++
T Consensus 174 n~lvlP~~~~v~~~ltS~----DViHSf~vP~-------lg------------------vK~Dai---PGr~n~~~~~~~ 221 (262)
T MTH00027 174 NRLILPVDTNVRVLITAA----DVLHSWTVPS-------LA------------------VKMDAV---PGRINETGFLIK 221 (262)
T ss_pred ceEEEeeCcEEEEEEEcC----ccccceeccc-------cc------------------CcccCC---CCceeeEEEEcC
Confidence 467889999999999875 4567665532 21 124544 477778899999
Q ss_pred CceeeEeeechHH-HHhccceeEEEEeC
Q 017112 333 NPGVWFMHCHLEL-HTGWGLKTAFAVED 359 (377)
Q Consensus 333 ~pG~w~~HCHi~~-H~~~Gm~~~~~v~~ 359 (377)
.||.+.-.|+-.- .-...|-..+++.+
T Consensus 222 ~~G~y~g~CsE~CG~~Hs~Mpi~v~vv~ 249 (262)
T MTH00027 222 RPGIFYGQCSEICGANHSFMPIVVESVS 249 (262)
T ss_pred CcEEEEEEcchhcCcCcCCCeEEEEEEC
Confidence 9999999998432 12256766666654
No 129
>PRK10183 hypothetical protein; Provisional
Probab=25.45 E-value=1.2e+02 Score=20.66 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=15.4
Q ss_pred eeEEEEeCCCEEEEEEEecC
Q 017112 28 TFAMEVESGKTYLLRIINAA 47 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~ 47 (377)
...+-.-.|+.||||+-.++
T Consensus 31 ~~v~I~H~G~~Y~LR~Tr~G 50 (56)
T PRK10183 31 GKVIIDHDGQEYLLRKTQAG 50 (56)
T ss_pred CEEEEEECCcEEEeEEccCC
Confidence 34666778999999987665
No 130
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=24.97 E-value=1.6e+02 Score=24.89 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=38.3
Q ss_pred EEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCcc-----CceEecEEEeCCCCE
Q 017112 31 MEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-----KPFTTEAILIAPGQT 86 (377)
Q Consensus 31 i~v~pG~~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v-----~P~~v~~l~l~~GqR 86 (377)
+.+.+ ++-+|+++|+|....+.+.=.+.....+...|.++ .++....+.+.+|.|
T Consensus 67 ~~~d~-~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~l~~gd~ 126 (193)
T PF07228_consen 67 AIIDP-ETGTLTYANAGHPPPLLLRPGGREIEQLESEGPPLGIFEDIDYQEQEIQLEPGDR 126 (193)
T ss_dssp EEEET-TTTEEEEEEESSSEEEEEETTCTEEEEETCSSBBCSSSCTTCEEEEEEE--TTEE
T ss_pred EEecc-cceEEEEeCCCCCCEEEEeccccceeecccCccceeeeccccccceEEEeccccE
Confidence 34555 34579999999888776666568888888888876 245666777777766
No 131
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=24.62 E-value=3.5e+02 Score=21.53 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=36.8
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEEeCCCccC-ce-----EecEEEeCCCCEEEEEEEeCC
Q 017112 38 TYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTK-PF-----TTEAILIAPGQTTNVLVQANQ 95 (377)
Q Consensus 38 ~yRlRlINa~~~~~~~~~idgh~~~VIa~DG~~v~-P~-----~v~~l~l~~GqR~dvlv~~~~ 95 (377)
.++|.|-|.|...----...+ +.....||..+. +. ....+.|.||+...+.|....
T Consensus 21 ~~~l~~tN~s~~~C~l~G~P~--v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 21 HATLTFTNTSDTPCTLYGYPG--VALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred EEEEEEEECCCCcEEeccCCc--EEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 457999999876322122233 444577887552 11 345799999999999998764
No 132
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=24.49 E-value=1.7e+02 Score=22.61 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=31.5
Q ss_pred EEEEeCCCccCceEecEEEeCCCCEEEEEEEeCCCCCceeEEeec
Q 017112 62 TVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARP 106 (377)
Q Consensus 62 ~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~~~~g~y~l~~~~ 106 (377)
..+..|.+-..++..+.|...---|..++|-++=++|.|+|....
T Consensus 41 ~l~~~~~g~~~~v~~~~i~~N~ps~l~~~lPa~L~~G~Y~l~V~T 85 (102)
T PF14734_consen 41 FLVSDDEGTETKVPCSSIVRNKPSRLIFILPADLAAGEYTLEVRT 85 (102)
T ss_pred EEEcCCCCceEEecHHHeEeCCCcEEEEECcCccCceEEEEEEEE
Confidence 333333343345666778888999999999886667999987653
No 133
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=24.20 E-value=88 Score=27.28 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=20.3
Q ss_pred EEEeCCCCEEEEEEEeCC-------CCCceeEEeec
Q 017112 78 AILIAPGQTTNVLVQANQ-------KPGRYFMAARP 106 (377)
Q Consensus 78 ~l~l~~GqR~dvlv~~~~-------~~g~y~l~~~~ 106 (377)
.-.|.+||.|||.|+..= +-|.|-+....
T Consensus 50 ~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l 85 (199)
T PF06775_consen 50 ARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLEL 85 (199)
T ss_pred ccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEE
Confidence 446889999999998741 24666666554
No 134
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=23.16 E-value=2.6e+02 Score=25.14 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=35.5
Q ss_pred eeEEEEeCCCEEEEEEEecCCC------CeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeC
Q 017112 28 TFAMEVESGKTYLLRIINAALN------DELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~------~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
+|.+++++|+++.|||+..+.. ..|+|.+-..+ . ++...+.|.|+...|.=++.+..
T Consensus 80 PPlfrl~p~~~~~lRI~~~~~~LP~DRESlf~lnv~~IP-------p---~~~~~n~l~iair~riKlFYRP~ 142 (234)
T PRK15192 80 PPLFMLSARQENSMRVVYTGAPLPADRESLFTLSIAAIP-------S---GKPEANRVQMAFRSALKLLYRPE 142 (234)
T ss_pred CCeEEECCCCceEEEEEECCCCCCCcceEEEEEEEEecC-------C---CCCCCcEEEEEEEeeeeEEEccc
Confidence 5788999999999999988742 23444443322 1 11113357777777777776654
No 135
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=22.83 E-value=2.1e+02 Score=25.90 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=34.4
Q ss_pred eeEEEEeCCCEEEEEEEecC---C------CCeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeC
Q 017112 28 TFAMEVESGKTYLLRIINAA---L------NDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~---~------~~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
+|.++++||++..|||+-.+ . ...|+|.+...+ =++...+.|.|+...|+=++.+..
T Consensus 68 PPlfrl~p~~~~~lRI~~~~~~~~~lP~DRESlf~lnv~~IP----------~~~~~~n~L~iair~~iKLFyRP~ 133 (239)
T PRK15254 68 PPLQRIDAGQKSQVRITQVRGLTDKLPQDRETLFWFNVRGVP----------PKPEDDNVLQLAMQSQLKLFYRPK 133 (239)
T ss_pred CCeEEECCCCceEEEEEEcccCCCCCCCCceEEEEEEEEEcC----------CCCCCCceEEEEEEeEEeEEEccc
Confidence 57889999999999998762 1 123444443322 111122357777777777777654
No 136
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=21.78 E-value=1.3e+02 Score=22.23 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=6.8
Q ss_pred CceEEEEEeCCC
Q 017112 58 GHNFTVVEVDAV 69 (377)
Q Consensus 58 gh~~~VIa~DG~ 69 (377)
.|.++|+..+|.
T Consensus 72 ~h~l~vvD~~G~ 83 (89)
T PF06832_consen 72 EHTLTVVDAQGR 83 (89)
T ss_pred eEEEEEEcCCCC
Confidence 356666555554
No 137
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=21.62 E-value=1.6e+02 Score=22.72 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=31.3
Q ss_pred eeeeCCCCEEEEEEEcCCceeeEeeechHHHHhccc--eeEEEE
Q 017112 316 TAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGL--KTAFAV 357 (377)
Q Consensus 316 tv~v~~~~~~~i~~~~d~pG~w~~HCHi~~H~~~Gm--~~~~~v 357 (377)
...|.+|+...+.|..+-.|.-+|.|++.| .|+ ...|.|
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~---~~~~~~~~f~v 68 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW---PGGKYHHSFDV 68 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE---CCccEEEEEEE
Confidence 446888999999998887899999999999 454 556655
No 138
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=21.58 E-value=2.6e+02 Score=25.12 Aligned_cols=59 Identities=8% Similarity=0.132 Sum_probs=35.6
Q ss_pred eeEEEEeCCCEEEEEEEecCCC------CeEEEEEcCceEEEEEeCCCccCceEecEEEeCCCCEEEEEEEeC
Q 017112 28 TFAMEVESGKTYLLRIINAALN------DELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQAN 94 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~------~~~~~~idgh~~~VIa~DG~~v~P~~v~~l~l~~GqR~dvlv~~~ 94 (377)
+|.++++||+...+||+..+.. ..|+|.+.+.+- .. +....+.|.|+...|.=++.+..
T Consensus 74 PPlfrl~p~~~q~lRI~~~~~~LP~DRESlf~lnv~~IP~-------~~-~~~~~n~l~iair~~iKLfyRP~ 138 (229)
T PRK15211 74 PPFFKVRPKEKQIIRIMKTDSALPKDRESLFWLNVQEIPP-------KP-KASEGNVLAVALNTQVKLIYRPK 138 (229)
T ss_pred CCeEEECCCCceEEEEEECCCCCCCCceEEEEEEEEEcCC-------CC-CccccceEEEEEEeeeeeEEcch
Confidence 5688999999999999988642 234444433321 00 00112357777777777777654
No 139
>KOG4605 consensus Uncharacterized conserved protein containing CDGSH-type Zn-finger [Function unknown]
Probab=21.22 E-value=1.3e+02 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=19.4
Q ss_pred eeEEEEeCCCEEEEEEEecCCCCeE
Q 017112 28 TFAMEVESGKTYLLRIINAALNDEL 52 (377)
Q Consensus 28 ~~~i~v~pG~~yRlRlINa~~~~~~ 52 (377)
+..+.++.|++|||=.-.-|....|
T Consensus 47 p~KVhL~a~KtY~WCsCG~S~sQPf 71 (129)
T KOG4605|consen 47 PIKVHLVAGKTYRWCSCGRSKSQPF 71 (129)
T ss_pred ceEEEEecCCEEEEEeccccCCCcc
Confidence 5678999999999987766655444
No 140
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=21.07 E-value=4.5e+02 Score=21.19 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCeEEEcCCCCCCCCCCCCceeEE---EEeCCC----EEEEEEEecCCCCeEEEEEc
Q 017112 8 SDAHTINGKPGPLFPCSEKHTFAM---EVESGK----TYLLRIINAALNDELFFAIA 57 (377)
Q Consensus 8 ~d~~liNG~~~~~~~~~~~~~~~i---~v~pG~----~yRlRlINa~~~~~~~~~id 57 (377)
++.+.++|.. --++ ..+||+ .+|+++.|--+...+...+.
T Consensus 14 G~~i~~~g~p----------~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~ 60 (129)
T PRK03999 14 GSYVVIDGEP----------CKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQP 60 (129)
T ss_pred CCEEEECCEE----------EEEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEec
Confidence 7788888874 1122 357887 79999999887777766664
Done!