Query 017114
Match_columns 377
No_of_seqs 369 out of 1438
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 05:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02871 UDP-sulfoquinovose:DA 100.0 4.8E-55 1E-59 398.7 40.3 372 1-375 90-464 (465)
2 PRK10307 putative glycosyl tra 100.0 8.2E-44 1.8E-48 321.4 32.0 287 54-348 105-410 (412)
3 cd03796 GT1_PIG-A_like This fa 100.0 6.9E-43 1.5E-47 313.6 32.9 327 1-348 30-370 (398)
4 TIGR03449 mycothiol_MshA UDP-N 100.0 2.4E-42 5.1E-47 311.8 34.3 340 1-347 36-403 (405)
5 PRK15427 colanic acid biosynth 100.0 9.2E-42 2E-46 304.8 31.8 277 48-345 111-405 (406)
6 TIGR02472 sucr_P_syn_N sucrose 100.0 3.1E-41 6.7E-46 305.5 33.2 336 1-340 42-436 (439)
7 cd04962 GT1_like_5 This family 100.0 4.4E-41 9.5E-46 300.5 33.2 331 1-346 28-371 (371)
8 TIGR03088 stp2 sugar transfera 100.0 2.9E-41 6.4E-46 301.6 32.0 326 1-346 30-373 (374)
9 cd03814 GT1_like_2 This family 100.0 4.4E-41 9.6E-46 299.7 32.9 331 1-343 30-363 (364)
10 cd05844 GT1_like_7 Glycosyltra 100.0 6.8E-41 1.5E-45 298.9 31.0 283 41-339 68-365 (367)
11 PRK00654 glgA glycogen synthas 100.0 3.8E-40 8.3E-45 300.1 31.9 295 46-348 107-465 (466)
12 cd03818 GT1_ExpC_like This fam 100.0 1.4E-39 3.1E-44 292.1 33.2 330 1-339 23-395 (396)
13 TIGR02468 sucrsPsyn_pln sucros 100.0 1.6E-39 3.6E-44 306.1 34.4 289 55-350 310-675 (1050)
14 cd03800 GT1_Sucrose_synthase T 100.0 2.5E-39 5.5E-44 292.0 33.8 334 1-339 37-397 (398)
15 cd03816 GT1_ALG1_like This fam 100.0 3.5E-39 7.6E-44 289.7 30.7 330 1-339 30-411 (415)
16 TIGR02149 glgA_Coryne glycogen 100.0 6.6E-39 1.4E-43 288.1 31.9 287 54-347 82-388 (388)
17 PRK15484 lipopolysaccharide 1, 100.0 1.8E-38 3.9E-43 282.1 32.7 314 3-346 36-378 (380)
18 cd03799 GT1_amsK_like This is 100.0 1E-38 2.2E-43 283.6 30.7 313 1-338 27-355 (355)
19 cd03813 GT1_like_3 This family 100.0 1.8E-39 4E-44 296.4 25.6 275 54-344 172-475 (475)
20 TIGR02095 glgA glycogen/starch 100.0 1.1E-38 2.4E-43 292.0 30.8 294 46-346 117-473 (473)
21 PRK15179 Vi polysaccharide bio 100.0 1.2E-38 2.6E-43 295.2 30.2 293 41-344 386-692 (694)
22 PLN02316 synthase/transferase 100.0 4.9E-38 1.1E-42 297.0 34.5 282 47-347 699-1035(1036)
23 cd04955 GT1_like_6 This family 100.0 9.7E-38 2.1E-42 278.2 33.0 321 1-344 31-363 (363)
24 cd03795 GT1_like_4 This family 100.0 5.9E-38 1.3E-42 278.9 31.0 271 51-335 79-357 (357)
25 cd03809 GT1_mtfB_like This fam 100.0 4.6E-38 1E-42 280.4 28.1 325 1-339 31-364 (365)
26 cd03801 GT1_YqgM_like This fam 100.0 2.5E-37 5.3E-42 275.7 32.7 334 1-343 30-373 (374)
27 PLN02939 transferase, transfer 100.0 2.6E-37 5.6E-42 287.0 33.3 301 47-350 600-971 (977)
28 cd03817 GT1_UGDG_like This fam 100.0 3E-37 6.6E-42 275.8 32.6 332 1-345 30-373 (374)
29 PRK10125 putative glycosyl tra 100.0 8E-38 1.7E-42 278.2 28.4 281 42-346 80-405 (405)
30 cd03805 GT1_ALG2_like This fam 100.0 4.3E-38 9.3E-43 283.2 27.0 277 51-338 90-392 (392)
31 PRK14099 glycogen synthase; Pr 100.0 9.8E-38 2.1E-42 283.1 29.4 289 53-349 131-482 (485)
32 cd03819 GT1_WavL_like This fam 100.0 1.8E-37 3.8E-42 275.6 29.9 308 1-333 26-354 (355)
33 PRK15490 Vi polysaccharide bio 100.0 1.2E-37 2.7E-42 275.5 28.3 290 44-345 269-575 (578)
34 PRK14098 glycogen synthase; Pr 100.0 1.2E-37 2.6E-42 282.8 29.0 297 47-347 131-487 (489)
35 cd03798 GT1_wlbH_like This fam 100.0 4.7E-37 1E-41 274.4 31.8 329 1-345 30-376 (377)
36 TIGR02470 sucr_synth sucrose s 100.0 7.6E-37 1.7E-41 282.7 33.8 294 43-340 370-743 (784)
37 cd04951 GT1_WbdM_like This fam 100.0 6.5E-37 1.4E-41 272.5 32.3 320 1-344 28-359 (360)
38 cd03794 GT1_wbuB_like This fam 100.0 5.2E-37 1.1E-41 275.9 31.1 332 1-338 30-393 (394)
39 cd03791 GT1_Glycogen_synthase_ 100.0 2.4E-37 5.3E-42 284.5 28.7 292 46-344 118-475 (476)
40 PLN02846 digalactosyldiacylgly 100.0 5.3E-37 1.1E-41 270.9 29.5 317 1-345 35-391 (462)
41 cd03808 GT1_cap1E_like This fa 100.0 5.1E-36 1.1E-40 266.2 32.7 319 1-339 26-358 (359)
42 cd03812 GT1_CapH_like This fam 100.0 5.6E-37 1.2E-41 272.8 26.4 310 1-326 28-346 (358)
43 cd03807 GT1_WbnK_like This fam 100.0 2.2E-36 4.7E-41 269.3 30.1 322 1-344 28-365 (365)
44 TIGR03087 stp1 sugar transfera 100.0 7E-37 1.5E-41 274.7 26.6 284 43-344 92-395 (397)
45 cd03821 GT1_Bme6_like This fam 100.0 6E-36 1.3E-40 267.4 32.2 284 47-339 79-374 (375)
46 cd03823 GT1_ExpE7_like This fa 100.0 2.7E-36 5.9E-41 268.2 29.5 272 42-344 83-358 (359)
47 cd03825 GT1_wcfI_like This fam 100.0 3.5E-36 7.5E-41 268.4 30.0 292 46-346 42-365 (365)
48 cd03792 GT1_Trehalose_phosphor 100.0 1.8E-36 3.9E-41 270.1 27.1 271 51-345 81-371 (372)
49 cd03820 GT1_amsD_like This fam 100.0 1.1E-35 2.4E-40 262.9 31.2 306 1-339 29-347 (348)
50 PRK09922 UDP-D-galactose:(gluc 100.0 3.3E-36 7.1E-41 266.7 27.7 276 42-348 71-358 (359)
51 cd03822 GT1_ecORF704_like This 100.0 2.2E-35 4.8E-40 263.2 32.6 315 1-343 29-365 (366)
52 cd03806 GT1_ALG11_like This fa 100.0 4.3E-36 9.4E-41 269.4 27.9 316 2-336 33-418 (419)
53 PLN00142 sucrose synthase 100.0 1.2E-35 2.6E-40 274.8 30.5 294 43-340 393-766 (815)
54 TIGR02918 accessory Sec system 100.0 1.3E-35 2.9E-40 268.9 28.9 278 45-345 201-499 (500)
55 cd03802 GT1_AviGT4_like This f 100.0 2.8E-35 6.1E-40 259.4 29.4 294 1-344 35-335 (335)
56 cd04946 GT1_AmsK_like This fam 100.0 2.7E-35 5.8E-40 264.0 28.8 266 54-339 126-406 (407)
57 PLN02949 transferase, transfer 100.0 2.1E-34 4.5E-39 258.7 32.2 228 109-349 213-460 (463)
58 cd03811 GT1_WabH_like This fam 100.0 7E-35 1.5E-39 258.1 28.9 313 1-330 28-352 (353)
59 PLN02501 digalactosyldiacylgly 100.0 7.2E-35 1.6E-39 260.8 27.9 278 39-340 418-705 (794)
60 PLN02275 transferase, transfer 100.0 1E-34 2.3E-39 257.4 28.8 292 3-309 34-371 (371)
61 KOG1111 N-acetylglucosaminyltr 100.0 6.8E-35 1.5E-39 237.5 19.1 327 1-350 31-371 (426)
62 cd03804 GT1_wbaZ_like This fam 100.0 4.1E-34 8.9E-39 253.3 25.6 268 42-338 70-350 (351)
63 PHA01630 putative group 1 glyc 100.0 9.5E-34 2.1E-38 244.5 25.9 238 76-345 66-330 (331)
64 cd04949 GT1_gtfA_like This fam 100.0 7.2E-33 1.6E-37 247.4 26.0 267 53-338 97-372 (372)
65 cd04950 GT1_like_1 Glycosyltra 100.0 3.2E-30 7E-35 229.0 26.5 265 53-342 100-369 (373)
66 PHA01633 putative glycosyl tra 100.0 7.6E-30 1.7E-34 217.2 26.3 238 79-339 70-334 (335)
67 PRK00726 murG undecaprenyldiph 100.0 1.8E-29 3.9E-34 223.8 26.6 304 1-340 28-353 (357)
68 cd03785 GT1_MurG MurG is an N- 100.0 3.6E-29 7.8E-34 221.7 25.0 299 1-336 26-349 (350)
69 cd03788 GT1_TPS Trehalose-6-Ph 100.0 6.8E-30 1.5E-34 231.0 19.7 277 55-342 131-459 (460)
70 TIGR02400 trehalose_OtsA alpha 100.0 5E-29 1.1E-33 223.3 23.2 276 56-342 128-454 (456)
71 PLN02605 monogalactosyldiacylg 100.0 2E-28 4.3E-33 218.1 24.8 266 45-340 90-377 (382)
72 cd03793 GT1_Glycogen_synthase_ 100.0 5.2E-28 1.1E-32 214.7 26.4 289 54-348 147-589 (590)
73 PRK05749 3-deoxy-D-manno-octul 100.0 9.9E-28 2.1E-32 217.3 23.4 281 45-346 114-420 (425)
74 TIGR01133 murG undecaprenyldip 100.0 1.6E-27 3.5E-32 211.0 24.0 298 1-336 27-346 (348)
75 PRK09814 beta-1,6-galactofuran 100.0 6.3E-27 1.4E-31 204.3 24.6 256 45-337 53-324 (333)
76 PRK13609 diacylglycerol glucos 100.0 1.3E-26 2.9E-31 207.0 24.7 270 44-345 93-371 (380)
77 PRK13608 diacylglycerol glucos 100.0 1.4E-26 3.1E-31 206.4 24.1 270 45-346 94-372 (391)
78 PLN03063 alpha,alpha-trehalose 100.0 8.3E-27 1.8E-31 221.5 23.1 284 54-348 145-480 (797)
79 PRK14501 putative bifunctional 99.9 1.4E-25 3E-30 213.9 19.7 281 56-349 134-466 (726)
80 PF00534 Glycos_transf_1: Glyc 99.9 2E-25 4.3E-30 176.9 14.8 153 170-325 11-172 (172)
81 COG0297 GlgA Glycogen synthase 99.9 2.2E-23 4.7E-28 184.7 25.8 291 55-349 130-481 (487)
82 TIGR00236 wecB UDP-N-acetylglu 99.9 1E-22 2.2E-27 181.0 21.0 277 42-339 73-362 (365)
83 TIGR02398 gluc_glyc_Psyn gluco 99.9 2.7E-22 5.8E-27 178.8 22.3 278 56-344 133-482 (487)
84 cd01635 Glycosyltransferase_GT 99.9 3.7E-22 8E-27 165.8 21.0 181 44-293 40-229 (229)
85 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 1.5E-22 3.2E-27 180.3 18.6 259 40-318 73-344 (363)
86 KOG2941 Beta-1,4-mannosyltrans 99.9 9.2E-21 2E-25 154.5 26.1 331 1-339 39-436 (444)
87 PRK00025 lpxB lipid-A-disaccha 99.9 9.6E-22 2.1E-26 176.0 21.3 259 41-329 71-359 (380)
88 KOG0853 Glycosyltransferase [C 99.9 2.8E-21 6E-26 168.7 18.7 285 54-346 144-468 (495)
89 KOG1387 Glycosyltransferase [C 99.9 2.1E-20 4.6E-25 152.3 22.1 283 48-347 143-460 (465)
90 PLN03064 alpha,alpha-trehalose 99.9 1.4E-20 3E-25 178.3 21.9 283 54-346 229-563 (934)
91 COG0438 RfaG Glycosyltransfera 99.9 3.7E-19 8E-24 157.9 27.9 278 56-347 84-378 (381)
92 TIGR02094 more_P_ylases alpha- 99.8 1.7E-17 3.6E-22 152.7 25.2 294 46-343 150-599 (601)
93 PF13692 Glyco_trans_1_4: Glyc 99.8 1.7E-19 3.7E-24 136.7 9.3 127 175-311 3-135 (135)
94 TIGR00215 lpxB lipid-A-disacch 99.8 5.1E-18 1.1E-22 150.7 19.5 260 41-329 75-369 (385)
95 COG0707 MurG UDP-N-acetylgluco 99.8 5.6E-17 1.2E-21 140.1 24.5 262 41-339 77-352 (357)
96 PRK12446 undecaprenyldiphospho 99.8 5.7E-16 1.2E-20 135.7 25.4 279 1-316 28-330 (352)
97 TIGR03713 acc_sec_asp1 accesso 99.7 1.8E-16 4E-21 144.2 19.7 205 113-340 269-517 (519)
98 PF00982 Glyco_transf_20: Glyc 99.7 8E-16 1.7E-20 137.9 19.0 279 55-343 141-473 (474)
99 cd04299 GT1_Glycogen_Phosphory 99.7 2E-14 4.3E-19 135.0 26.4 301 49-353 240-698 (778)
100 PRK10117 trehalose-6-phosphate 99.7 4.3E-15 9.3E-20 131.5 20.3 277 56-343 124-452 (474)
101 TIGR03492 conserved hypothetic 99.7 1.7E-13 3.7E-18 121.9 26.0 269 43-338 79-392 (396)
102 COG0380 OtsA Trehalose-6-phosp 99.6 6.5E-14 1.4E-18 123.4 21.7 277 57-344 149-479 (486)
103 PLN02205 alpha,alpha-trehalose 99.6 6.2E-14 1.4E-18 134.2 23.1 282 53-345 197-552 (854)
104 TIGR02919 accessory Sec system 99.6 1.2E-13 2.6E-18 123.0 23.0 193 115-332 238-432 (438)
105 PF05693 Glycogen_syn: Glycoge 99.6 4.8E-14 1E-18 125.6 19.5 243 107-352 212-588 (633)
106 PF13524 Glyco_trans_1_2: Glyc 99.6 1.1E-14 2.5E-19 101.8 9.6 90 245-339 1-91 (92)
107 PF13439 Glyco_transf_4: Glyco 99.6 9.6E-15 2.1E-19 116.1 9.6 148 1-154 28-176 (177)
108 PF13579 Glyco_trans_4_4: Glyc 99.6 9.8E-15 2.1E-19 114.0 8.6 139 1-148 17-160 (160)
109 TIGR03568 NeuC_NnaA UDP-N-acet 99.5 5.7E-12 1.2E-16 111.2 23.8 272 41-339 79-362 (365)
110 COG1519 KdtA 3-deoxy-D-manno-o 99.5 5.3E-11 1.1E-15 102.0 22.6 266 42-327 110-402 (419)
111 PF02684 LpxB: Lipid-A-disacch 99.5 1.1E-11 2.5E-16 107.5 18.9 259 38-322 65-351 (373)
112 COG0763 LpxB Lipid A disacchar 99.4 2.8E-11 6E-16 102.5 18.8 263 41-326 71-359 (381)
113 PF13528 Glyco_trans_1_3: Glyc 99.4 2.7E-11 5.8E-16 105.9 19.5 223 44-308 83-317 (318)
114 PF02350 Epimerase_2: UDP-N-ac 99.4 6.6E-12 1.4E-16 109.5 15.1 276 42-339 54-342 (346)
115 PRK01021 lpxB lipid-A-disaccha 99.3 2.3E-10 5E-15 103.7 21.0 260 41-327 296-587 (608)
116 COG4641 Uncharacterized protei 99.3 2.6E-10 5.7E-15 96.1 19.4 273 45-341 67-358 (373)
117 TIGR01426 MGT glycosyltransfer 99.3 2.4E-10 5.2E-15 102.8 20.5 155 173-339 225-387 (392)
118 cd03784 GT1_Gtf_like This fami 99.3 2.1E-10 4.5E-15 103.6 19.7 149 172-336 238-396 (401)
119 COG0381 WecB UDP-N-acetylgluco 99.3 8.5E-10 1.9E-14 93.9 21.0 274 42-339 79-365 (383)
120 TIGR00661 MJ1255 conserved hyp 99.3 6.4E-10 1.4E-14 97.0 19.6 229 43-312 81-315 (321)
121 PF04007 DUF354: Protein of un 99.2 1.4E-09 3E-14 93.3 18.2 270 1-309 26-308 (335)
122 TIGR03590 PseG pseudaminic aci 99.2 1.1E-09 2.3E-14 93.1 16.3 196 45-275 70-269 (279)
123 PF13477 Glyco_trans_4_2: Glyc 99.1 5E-10 1.1E-14 85.0 9.7 114 1-124 23-139 (139)
124 PF09314 DUF1972: Domain of un 99.1 1.8E-09 3.9E-14 83.8 12.2 146 1-150 33-185 (185)
125 PHA03392 egt ecdysteroid UDP-g 99.1 5E-08 1.1E-12 89.7 23.5 140 174-326 297-447 (507)
126 PF07429 Glyco_transf_56: 4-al 99.0 7.7E-07 1.7E-11 74.9 22.6 245 46-308 69-330 (360)
127 COG1817 Uncharacterized protei 98.9 1.4E-07 3.1E-12 77.4 17.2 275 1-313 26-316 (346)
128 PRK02797 4-alpha-L-fucosyltran 98.9 3.5E-07 7.6E-12 75.8 19.3 271 44-346 28-317 (322)
129 PF04464 Glyphos_transf: CDP-G 98.8 2.5E-07 5.5E-12 82.5 15.8 271 55-342 78-367 (369)
130 COG1819 Glycosyl transferases, 98.8 3.8E-07 8.2E-12 81.6 16.7 153 173-339 237-396 (406)
131 PF13844 Glyco_transf_41: Glyc 98.8 5.6E-07 1.2E-11 80.2 16.8 172 171-346 282-467 (468)
132 PRK14089 ipid-A-disaccharide s 98.7 6E-07 1.3E-11 78.0 14.5 179 54-272 75-260 (347)
133 PRK10017 colanic acid biosynth 98.7 0.00015 3.2E-09 65.3 28.6 249 46-318 110-399 (426)
134 COG3914 Spy Predicted O-linked 98.7 5.6E-06 1.2E-10 73.9 19.0 275 45-350 325-618 (620)
135 PLN02448 UDP-glycosyltransfera 98.6 0.00012 2.5E-09 67.1 26.3 142 173-325 274-430 (459)
136 KOG3742 Glycogen synthase [Car 98.4 5.3E-06 1.1E-10 71.5 11.8 105 235-340 493-608 (692)
137 COG4671 Predicted glycosyl tra 98.3 0.00013 2.9E-09 61.5 17.3 295 1-311 40-365 (400)
138 COG3980 spsG Spore coat polysa 98.3 3.1E-05 6.7E-10 63.1 13.0 137 173-322 158-304 (318)
139 PF04101 Glyco_tran_28_C: Glyc 98.2 1.4E-07 3.1E-12 73.9 -1.2 111 201-321 31-154 (167)
140 PLN02208 glycosyltransferase f 98.2 0.0038 8.3E-08 56.7 26.3 204 113-326 190-417 (442)
141 PLN02670 transferase, transfer 98.1 0.00012 2.5E-09 66.7 15.3 163 172-344 277-465 (472)
142 PF12000 Glyco_trans_4_3: Gkyc 98.1 4.5E-05 9.8E-10 58.7 10.4 148 1-154 2-170 (171)
143 PLN03007 UDP-glucosyltransfera 98.1 0.0097 2.1E-07 55.0 28.0 133 172-312 284-441 (482)
144 KOG1050 Trehalose-6-phosphate 98.0 0.00053 1.1E-08 65.2 17.2 275 55-339 140-469 (732)
145 TIGR03609 S_layer_CsaB polysac 98.0 0.0044 9.6E-08 53.5 21.3 200 45-273 56-276 (298)
146 cd03789 GT1_LPS_heptosyltransf 97.9 0.001 2.2E-08 56.9 16.3 80 190-274 140-225 (279)
147 PLN03004 UDP-glycosyltransfera 97.9 0.00037 7.9E-09 63.2 13.8 135 172-315 269-428 (451)
148 PLN02562 UDP-glycosyltransfera 97.9 0.00048 1E-08 62.8 14.2 135 173-317 273-419 (448)
149 PF00201 UDPGT: UDP-glucoronos 97.9 4.6E-05 9.9E-10 71.1 7.8 134 172-319 275-417 (500)
150 TIGR02195 heptsyl_trn_II lipop 97.7 0.0064 1.4E-07 53.5 18.8 95 173-272 174-276 (334)
151 PLN02764 glycosyltransferase f 97.7 0.00088 1.9E-08 60.7 13.4 150 170-326 254-423 (453)
152 PLN00164 glucosyltransferase; 97.7 0.008 1.7E-07 55.4 19.5 146 173-326 272-447 (480)
153 PLN02554 UDP-glycosyltransfera 97.7 0.007 1.5E-07 55.9 19.1 134 173-316 274-446 (481)
154 PF06925 MGDG_synth: Monogalac 97.7 0.00029 6.4E-09 55.1 8.7 91 41-148 75-168 (169)
155 COG0859 RfaF ADP-heptose:LPS h 97.7 0.0062 1.3E-07 53.5 17.7 96 173-273 175-277 (334)
156 PLN02863 UDP-glucoronosyl/UDP- 97.6 0.0048 1E-07 56.7 16.8 128 173-310 283-432 (477)
157 TIGR02201 heptsyl_trn_III lipo 97.6 0.0059 1.3E-07 54.0 16.8 96 173-273 181-286 (344)
158 COG3660 Predicted nucleoside-d 97.6 0.017 3.7E-07 47.0 17.2 188 54-273 69-272 (329)
159 PF11440 AGT: DNA alpha-glucos 97.6 0.019 4E-07 47.2 17.4 283 1-311 17-353 (355)
160 PLN00414 glycosyltransferase f 97.6 0.0016 3.5E-08 59.2 13.0 151 167-327 246-419 (446)
161 PLN02410 UDP-glucoronosyl/UDP- 97.6 0.002 4.3E-08 58.7 13.4 142 171-325 262-423 (451)
162 PLN02992 coniferyl-alcohol glu 97.5 0.0069 1.5E-07 55.5 16.5 133 172-312 262-428 (481)
163 PRK10916 ADP-heptose:LPS hepto 97.5 0.013 2.8E-07 51.9 17.9 97 172-273 179-287 (348)
164 PLN02210 UDP-glucosyl transfer 97.5 0.0041 8.8E-08 56.9 14.5 132 173-313 269-417 (456)
165 PLN02173 UDP-glucosyl transfer 97.5 0.002 4.3E-08 58.6 12.3 144 172-325 263-421 (449)
166 PF06258 Mito_fiss_Elm1: Mitoc 97.5 0.018 4E-07 49.6 17.2 189 51-276 53-259 (311)
167 PLN02207 UDP-glycosyltransfera 97.4 0.032 6.9E-07 51.1 18.8 187 114-310 209-425 (468)
168 PF08323 Glyco_transf_5: Starc 97.3 0.00049 1.1E-08 57.4 5.8 89 45-134 121-233 (245)
169 PF01075 Glyco_transf_9: Glyco 97.3 0.014 3.1E-07 48.9 14.7 97 172-273 104-209 (247)
170 PLN03015 UDP-glucosyl transfer 97.1 0.041 8.9E-07 50.3 16.4 147 171-325 265-441 (470)
171 PRK10422 lipopolysaccharide co 97.1 0.17 3.7E-06 44.9 21.4 97 172-273 182-288 (352)
172 PF05159 Capsule_synth: Capsul 97.1 0.1 2.2E-06 44.3 17.9 97 172-275 115-227 (269)
173 PLN02152 indole-3-acetate beta 97.1 0.023 5E-07 51.8 14.2 132 172-313 260-419 (455)
174 PLN02167 UDP-glycosyltransfera 97.0 0.017 3.8E-07 53.3 13.5 128 173-312 280-435 (475)
175 PLN02534 UDP-glycosyltransfera 97.0 0.033 7.2E-07 51.3 14.4 146 172-325 282-459 (491)
176 PF08288 PIGA: PIGA (GPI ancho 96.9 0.0028 6E-08 42.0 5.2 72 19-90 14-86 (90)
177 PLN02555 limonoid glucosyltran 96.9 0.019 4.1E-07 52.8 11.9 142 173-325 277-442 (480)
178 PF04413 Glycos_transf_N: 3-De 96.8 0.015 3.2E-07 46.2 9.2 98 42-147 82-179 (186)
179 PF15024 Glyco_transf_18: Glyc 96.6 0.0089 1.9E-07 54.5 7.9 151 177-344 280-454 (559)
180 COG1887 TagB Putative glycosyl 96.6 0.14 3.1E-06 45.7 15.3 221 113-342 145-384 (388)
181 PF08660 Alg14: Oligosaccharid 96.6 0.009 2E-07 46.4 6.7 78 41-131 78-161 (170)
182 PF10933 DUF2827: Protein of u 96.5 0.42 9.1E-06 41.3 16.6 252 55-333 73-352 (364)
183 PF11997 DUF3492: Domain of un 96.4 0.011 2.4E-07 49.7 6.8 81 55-135 172-264 (268)
184 COG0058 GlgP Glucan phosphoryl 96.3 0.059 1.3E-06 51.3 11.5 124 172-296 485-631 (750)
185 PF04230 PS_pyruv_trans: Polys 96.2 0.64 1.4E-05 39.4 17.9 181 69-274 89-284 (286)
186 TIGR02193 heptsyl_trn_I lipopo 96.1 0.22 4.8E-06 43.5 13.4 97 172-273 178-280 (319)
187 PRK14986 glycogen phosphorylas 95.8 0.15 3.2E-06 49.4 11.8 122 171-295 540-695 (815)
188 PRK10964 ADP-heptose:LPS hepto 95.8 0.32 7E-06 42.5 13.5 97 174-275 179-281 (322)
189 KOG1192 UDP-glucuronosyl and U 95.6 0.21 4.6E-06 46.7 12.0 144 174-323 278-434 (496)
190 PF00343 Phosphorylase: Carboh 95.6 0.13 2.9E-06 48.9 10.3 124 171-295 441-596 (713)
191 cd04300 GT1_Glycogen_Phosphory 95.4 0.21 4.6E-06 48.3 11.2 122 171-295 527-682 (797)
192 PRK14985 maltodextrin phosphor 95.2 0.082 1.8E-06 50.8 7.7 122 171-295 526-681 (798)
193 TIGR02093 P_ylase glycogen/sta 94.8 0.13 2.7E-06 49.7 7.9 122 171-295 524-679 (794)
194 KOG4626 O-linked N-acetylgluco 94.8 0.19 4.1E-06 46.4 8.5 184 171-357 756-952 (966)
195 COG2327 WcaK Polysaccharide py 94.7 2.9 6.2E-05 37.1 20.2 235 55-312 89-351 (385)
196 COG0373 HemA Glutamyl-tRNA red 94.7 2.5 5.3E-05 38.0 15.0 122 174-303 178-302 (414)
197 KOG3349 Predicted glycosyltran 94.6 0.42 9E-06 35.6 8.4 90 175-272 5-106 (170)
198 PF03016 Exostosin: Exostosin 94.5 0.052 1.1E-06 47.0 4.3 70 234-306 228-300 (302)
199 PF10087 DUF2325: Uncharacteri 94.3 0.16 3.5E-06 35.4 5.6 76 204-279 2-88 (97)
200 PF00862 Sucrose_synth: Sucros 93.2 0.61 1.3E-05 42.3 8.4 73 54-127 400-479 (550)
201 TIGR03646 YtoQ_fam YtoQ family 92.3 0.93 2E-05 32.8 6.7 71 236-309 69-143 (144)
202 PF01113 DapB_N: Dihydrodipico 91.8 0.29 6.3E-06 35.9 4.1 86 189-277 13-102 (124)
203 PF12996 DUF3880: DUF based on 91.7 0.31 6.8E-06 32.4 3.8 64 112-184 14-77 (79)
204 PF11071 DUF2872: Protein of u 91.4 1.3 2.8E-05 32.1 6.6 71 236-309 66-140 (141)
205 PRK00676 hemA glutamyl-tRNA re 89.4 14 0.00031 32.4 12.9 138 197-347 170-320 (338)
206 PF12038 DUF3524: Domain of un 87.4 4.2 9.2E-05 31.2 7.3 85 48-134 52-137 (168)
207 PF00852 Glyco_transf_10: Glyc 87.0 3.5 7.5E-05 36.6 7.8 81 234-318 219-305 (349)
208 KOG2619 Fucosyltransferase [Ca 84.7 13 0.00028 33.0 9.9 128 173-320 196-328 (372)
209 PF10093 DUF2331: Uncharacteri 84.2 13 0.00029 32.9 9.8 76 189-270 197-286 (374)
210 KOG1021 Acetylglucosaminyltran 83.7 6.7 0.00014 36.3 8.3 85 234-324 335-424 (464)
211 PRK06718 precorrin-2 dehydroge 82.6 24 0.00052 28.5 14.2 77 201-281 33-109 (202)
212 PRK00994 F420-dependent methyl 80.9 29 0.00063 28.4 11.5 102 177-297 7-118 (277)
213 PF05686 Glyco_transf_90: Glyc 77.9 21 0.00045 32.3 9.2 89 254-346 225-318 (395)
214 COG4370 Uncharacterized protei 76.6 7.2 0.00016 33.2 5.4 198 110-326 172-394 (412)
215 TIGR03837 efp_adjacent_2 conse 75.7 40 0.00087 29.8 9.8 78 187-270 193-284 (371)
216 PF01408 GFO_IDH_MocA: Oxidore 75.3 27 0.00059 25.0 8.0 87 177-272 3-92 (120)
217 COG2204 AtoC Response regulato 75.2 12 0.00026 34.3 6.9 112 203-314 6-125 (464)
218 cd01020 TroA_b Metal binding p 75.1 47 0.001 28.1 10.2 90 234-328 44-136 (264)
219 PRK05583 ribosomal protein L7A 74.0 16 0.00034 25.8 5.9 75 188-263 21-98 (104)
220 PRK13940 glutamyl-tRNA reducta 73.9 72 0.0016 29.2 14.2 98 174-281 181-279 (414)
221 PF03401 TctC: Tripartite tric 73.1 38 0.00082 28.9 9.2 142 175-322 79-243 (274)
222 COG2120 Uncharacterized protei 72.3 10 0.00022 31.5 5.4 21 44-64 98-118 (237)
223 PF12738 PTCB-BRCT: twin BRCT 70.4 16 0.00035 22.7 4.9 58 204-272 3-61 (63)
224 PRK00048 dihydrodipicolinate r 69.7 14 0.0003 31.1 5.8 77 192-275 17-93 (257)
225 PF13241 NAD_binding_7: Putati 69.6 19 0.00041 25.2 5.7 70 201-281 30-100 (103)
226 COG4394 Uncharacterized protei 69.4 45 0.00097 28.3 8.3 79 188-271 190-281 (370)
227 PRK05447 1-deoxy-D-xylulose 5- 69.0 43 0.00094 30.0 8.7 94 173-273 26-122 (385)
228 smart00672 CAP10 Putative lipo 68.6 71 0.0015 26.9 10.9 89 253-345 155-248 (256)
229 PRK05562 precorrin-2 dehydroge 66.8 71 0.0015 26.2 14.1 77 201-281 48-125 (223)
230 COG0052 RpsB Ribosomal protein 66.8 28 0.00061 28.8 6.6 32 56-88 157-188 (252)
231 COG1927 Mtd Coenzyme F420-depe 66.7 66 0.0014 25.8 10.8 115 176-309 6-128 (277)
232 COG0673 MviM Predicted dehydro 66.4 42 0.00091 29.5 8.5 91 175-272 4-97 (342)
233 PF10649 DUF2478: Protein of u 66.1 12 0.00027 28.6 4.3 37 236-272 86-129 (159)
234 PRK05472 redox-sensing transcr 64.6 76 0.0016 25.8 10.0 87 187-273 66-177 (213)
235 COG1618 Predicted nucleotide k 63.3 19 0.00041 27.7 4.7 73 235-311 93-177 (179)
236 COG4565 CitB Response regulato 61.2 54 0.0012 26.5 7.1 75 234-311 36-120 (224)
237 PF04392 ABC_sub_bind: ABC tra 61.1 90 0.002 26.8 9.4 146 112-273 55-218 (294)
238 PF02826 2-Hacid_dh_C: D-isome 60.1 42 0.00091 26.3 6.6 39 234-272 83-126 (178)
239 TIGR01761 thiaz-red thiazoliny 59.4 74 0.0016 28.2 8.5 91 173-273 2-97 (343)
240 TIGR00036 dapB dihydrodipicoli 59.4 30 0.00065 29.3 6.0 81 190-275 15-101 (266)
241 KOG0780 Signal recognition par 59.2 1.4E+02 0.003 27.0 10.5 77 258-340 259-338 (483)
242 COG1519 KdtA 3-deoxy-D-manno-o 59.2 1.4E+02 0.0031 27.1 10.0 100 172-272 48-152 (419)
243 PF01993 MTD: methylene-5,6,7, 58.1 15 0.00032 30.0 3.5 103 177-297 6-117 (276)
244 cd00027 BRCT Breast Cancer Sup 57.7 42 0.00092 20.6 5.5 61 202-272 2-64 (72)
245 PF01297 TroA: Periplasmic sol 57.7 27 0.00058 29.4 5.4 90 235-327 40-132 (256)
246 PRK07714 hypothetical protein; 57.1 49 0.0011 23.1 5.8 75 187-262 21-98 (100)
247 PRK08410 2-hydroxyacid dehydro 57.0 60 0.0013 28.3 7.5 42 234-275 188-234 (311)
248 cd01080 NAD_bind_m-THF_DH_Cycl 56.2 41 0.00089 26.2 5.7 62 190-252 29-97 (168)
249 PRK06932 glycerate dehydrogena 55.7 61 0.0013 28.3 7.4 43 234-276 189-236 (314)
250 PRK06487 glycerate dehydrogena 55.6 56 0.0012 28.6 7.1 43 234-276 189-236 (317)
251 TIGR02536 eut_hyp ethanolamine 55.0 64 0.0014 26.1 6.7 37 239-275 50-99 (207)
252 PLN02928 oxidoreductase family 53.3 59 0.0013 28.9 7.0 43 233-275 217-264 (347)
253 cd01016 TroA Metal binding pro 51.4 80 0.0017 26.9 7.3 93 235-327 43-141 (276)
254 PF11238 DUF3039: Protein of u 50.6 13 0.00029 22.6 1.7 17 256-272 14-30 (58)
255 PRK07283 hypothetical protein; 50.2 47 0.001 23.1 4.7 73 188-262 22-97 (98)
256 PTZ00254 40S ribosomal protein 49.9 1.3E+02 0.0029 25.1 7.9 94 186-281 52-157 (249)
257 PLN02929 NADH kinase 49.5 64 0.0014 27.9 6.3 75 235-311 57-137 (301)
258 PRK06843 inosine 5-monophospha 49.2 47 0.001 30.1 5.6 70 240-309 10-88 (404)
259 PRK10840 transcriptional regul 49.0 1.4E+02 0.003 24.0 10.5 106 202-310 4-125 (216)
260 KOG2264 Exostosin EXT1L [Signa 48.6 83 0.0018 29.5 7.0 119 234-363 408-535 (907)
261 TIGR00715 precor6x_red precorr 48.5 1.7E+02 0.0036 24.7 21.1 74 225-309 178-255 (256)
262 cd05213 NAD_bind_Glutamyl_tRNA 48.3 1.3E+02 0.0029 26.1 8.3 98 174-279 178-277 (311)
263 PRK05749 3-deoxy-D-manno-octul 47.8 2.2E+02 0.0048 26.0 10.2 100 173-273 50-154 (425)
264 cd01019 ZnuA Zinc binding prot 47.8 1.2E+02 0.0026 26.0 7.9 94 233-327 43-161 (286)
265 COG0803 LraI ABC-type metal io 47.8 1.2E+02 0.0026 26.3 7.9 94 235-328 74-174 (303)
266 PF07355 GRDB: Glycine/sarcosi 47.6 70 0.0015 28.1 6.2 48 43-90 68-122 (349)
267 PF00389 2-Hacid_dh: D-isomer 47.2 1.1E+02 0.0024 22.4 12.8 55 223-279 19-73 (133)
268 COG3613 Nucleoside 2-deoxyribo 47.0 34 0.00073 26.5 3.8 38 237-274 63-106 (172)
269 PF04413 Glycos_transf_N: 3-De 46.9 1.5E+02 0.0031 23.6 8.1 99 174-273 22-125 (186)
270 PRK13302 putative L-aspartate 46.5 1.5E+02 0.0032 25.3 8.1 93 175-275 7-100 (271)
271 cd01017 AdcA Metal binding pro 46.4 1E+02 0.0022 26.4 7.2 93 234-327 44-153 (282)
272 PRK15438 erythronate-4-phospha 45.9 1.1E+02 0.0024 27.6 7.5 76 201-276 116-210 (378)
273 PF03808 Glyco_tran_WecB: Glyc 45.4 1.5E+02 0.0032 23.2 7.7 81 2-90 48-137 (172)
274 cd01018 ZntC Metal binding pro 45.3 97 0.0021 26.2 6.9 91 235-327 44-152 (266)
275 PRK02122 glucosamine-6-phospha 45.1 66 0.0014 31.4 6.4 19 44-62 511-529 (652)
276 PRK13304 L-aspartate dehydroge 44.9 73 0.0016 27.0 6.0 79 192-276 16-95 (265)
277 TIGR01921 DAP-DH diaminopimela 44.8 1.9E+02 0.0041 25.4 8.5 75 192-274 18-92 (324)
278 KOG2884 26S proteasome regulat 44.7 1.7E+02 0.0037 23.8 9.8 62 243-311 168-229 (259)
279 TIGR02990 ectoine_eutA ectoine 44.7 1.6E+02 0.0035 24.5 7.9 47 228-275 162-215 (239)
280 COG3563 KpsC Capsule polysacch 44.2 1.3E+02 0.0027 27.9 7.3 89 181-277 161-255 (671)
281 COG5017 Uncharacterized conser 43.4 1.4E+02 0.003 22.4 6.8 67 204-281 34-101 (161)
282 COG0439 AccC Biotin carboxylas 43.4 2.5E+02 0.0054 26.0 9.4 112 185-309 59-185 (449)
283 TIGR03609 S_layer_CsaB polysac 43.2 2.2E+02 0.0047 24.5 9.0 83 187-274 12-107 (298)
284 PRK10360 DNA-binding transcrip 43.1 1.6E+02 0.0034 22.9 9.9 105 203-310 3-117 (196)
285 PRK05282 (alpha)-aspartyl dipe 42.6 1.8E+02 0.0039 24.1 7.8 43 234-276 71-123 (233)
286 COG2085 Predicted dinucleotide 42.3 1.6E+02 0.0035 23.9 7.1 70 201-275 24-95 (211)
287 PF05014 Nuc_deoxyrib_tr: Nucl 42.0 29 0.00063 24.7 2.8 40 237-276 56-99 (113)
288 PRK05339 PEP synthetase regula 41.5 1.2E+02 0.0026 25.8 6.5 59 237-296 138-201 (269)
289 PF00391 PEP-utilizers: PEP-ut 41.5 85 0.0018 20.7 4.8 49 224-273 12-60 (80)
290 COG1701 Uncharacterized protei 41.3 1.9E+02 0.0042 23.4 8.6 93 240-345 151-245 (256)
291 cd01137 PsaA Metal binding pro 41.2 2.3E+02 0.005 24.3 9.3 92 235-327 59-157 (287)
292 COG0111 SerA Phosphoglycerate 41.1 1.6E+02 0.0034 25.9 7.6 37 234-270 189-230 (324)
293 PRK04207 glyceraldehyde-3-phos 40.7 2.1E+02 0.0045 25.4 8.4 82 191-273 15-109 (341)
294 PF03435 Saccharop_dh: Sacchar 40.5 1.2E+02 0.0025 27.4 7.0 80 191-272 12-97 (386)
295 PF01408 GFO_IDH_MocA: Oxidore 40.5 77 0.0017 22.5 5.0 42 43-84 50-91 (120)
296 COG2984 ABC-type uncharacteriz 40.4 1.3E+02 0.0028 26.2 6.7 151 110-277 82-250 (322)
297 PF00072 Response_reg: Respons 40.3 1.2E+02 0.0026 20.9 8.3 90 214-306 12-112 (112)
298 PRK08057 cobalt-precorrin-6x r 39.7 1.3E+02 0.0028 25.3 6.6 74 225-309 171-247 (248)
299 PF07085 DRTGG: DRTGG domain; 39.5 56 0.0012 22.9 3.9 17 233-249 74-90 (105)
300 COG0496 SurE Predicted acid ph 39.4 95 0.002 26.0 5.6 44 46-89 74-127 (252)
301 cd05565 PTS_IIB_lactose PTS_II 39.2 83 0.0018 22.0 4.5 70 204-273 4-79 (99)
302 PRK15409 bifunctional glyoxyla 38.7 1.5E+02 0.0032 26.1 7.1 43 234-276 192-239 (323)
303 PRK07579 hypothetical protein; 38.3 76 0.0016 26.5 4.9 82 176-261 3-84 (245)
304 PF13263 PHP_C: PHP-associated 38.2 15 0.00032 22.4 0.6 41 261-306 10-52 (56)
305 PF04016 DUF364: Domain of unk 37.6 1.2E+02 0.0027 22.9 5.7 71 232-307 52-130 (147)
306 KOG0368 Acetyl-CoA carboxylase 37.5 1.2E+02 0.0025 32.6 6.8 91 186-294 123-215 (2196)
307 KOG3040 Predicted sugar phosph 37.1 2.3E+02 0.005 23.1 10.0 168 118-311 70-259 (262)
308 TIGR00075 hypD hydrogenase exp 36.8 1.7E+02 0.0036 26.1 6.9 86 189-274 124-226 (369)
309 PTZ00182 3-methyl-2-oxobutanat 36.7 1.7E+02 0.0036 26.2 7.2 66 201-266 233-311 (355)
310 PF06345 Drf_DAD: DRF Autoregu 36.7 29 0.00063 14.3 1.1 11 257-267 4-14 (15)
311 PF02670 DXP_reductoisom: 1-de 36.4 1.8E+02 0.0038 21.6 8.6 94 172-271 22-119 (129)
312 cd01750 GATase1_CobQ Type 1 gl 36.3 1E+02 0.0023 24.5 5.4 63 205-273 4-79 (194)
313 PLN02527 aspartate carbamoyltr 35.7 3E+02 0.0065 24.0 13.0 134 107-251 87-227 (306)
314 PF04312 DUF460: Protein of un 35.7 64 0.0014 24.0 3.6 28 254-281 64-92 (138)
315 KOG0832 Mitochondrial/chloropl 35.5 2.5E+02 0.0055 23.1 7.4 37 244-281 175-212 (251)
316 PRK03743 pdxA 4-hydroxythreoni 35.5 1.2E+02 0.0027 26.6 6.0 77 222-308 237-323 (332)
317 PRK15469 ghrA bifunctional gly 35.2 1.1E+02 0.0023 26.8 5.6 41 233-273 181-226 (312)
318 TIGR02130 dapB_plant dihydrodi 35.2 1.7E+02 0.0036 25.0 6.5 106 189-296 13-124 (275)
319 PF07801 DUF1647: Protein of u 35.0 2E+02 0.0043 21.7 6.6 57 173-229 60-118 (142)
320 COG1712 Predicted dinucleotide 34.9 1.6E+02 0.0035 24.3 6.0 81 192-278 15-96 (255)
321 PRK11579 putative oxidoreducta 34.7 2.8E+02 0.0061 24.5 8.4 88 175-272 5-94 (346)
322 COG4567 Response regulator con 34.7 2E+02 0.0042 22.1 6.0 58 251-308 63-124 (182)
323 TIGR01917 gly_red_sel_B glycin 34.6 1.4E+02 0.003 27.2 6.1 45 44-88 65-116 (431)
324 PF01012 ETF: Electron transfe 34.6 1E+02 0.0022 23.7 5.0 48 42-89 77-124 (164)
325 PF03618 Kinase-PPPase: Kinase 34.6 1.9E+02 0.004 24.4 6.6 34 236-270 131-165 (255)
326 PRK06719 precorrin-2 dehydroge 34.4 2.1E+02 0.0046 21.9 10.6 38 240-277 68-105 (157)
327 TIGR01918 various_sel_PB selen 34.1 1.4E+02 0.0031 27.1 6.2 45 44-88 65-116 (431)
328 COG0052 RpsB Ribosomal protein 33.9 1.3E+02 0.0028 25.1 5.5 26 256-281 169-195 (252)
329 cd03146 GAT1_Peptidase_E Type 33.8 2.6E+02 0.0056 22.7 9.9 88 188-275 16-123 (212)
330 TIGR00853 pts-lac PTS system, 33.7 83 0.0018 21.7 3.9 70 205-275 8-84 (95)
331 TIGR01470 cysG_Nterm siroheme 33.5 2.6E+02 0.0056 22.6 16.2 77 201-281 32-109 (205)
332 TIGR02853 spore_dpaA dipicolin 33.3 1.8E+02 0.0039 25.0 6.7 38 233-270 200-237 (287)
333 KOG2555 AICAR transformylase/I 33.2 97 0.0021 27.9 4.9 68 208-279 496-564 (588)
334 PF03447 NAD_binding_3: Homose 33.1 56 0.0012 23.4 3.1 44 234-277 49-94 (117)
335 PRK09190 hypothetical protein; 33.0 1.9E+02 0.0041 23.7 6.3 76 188-264 115-199 (220)
336 PF01118 Semialdhyde_dh: Semia 32.6 45 0.00096 24.1 2.6 76 190-270 13-94 (121)
337 PRK07574 formate dehydrogenase 32.5 1.3E+02 0.0029 27.1 5.9 42 234-275 240-286 (385)
338 PRK03371 pdxA 4-hydroxythreoni 32.4 2.2E+02 0.0047 25.1 6.9 77 222-308 236-322 (326)
339 PF00205 TPP_enzyme_M: Thiamin 32.4 1.9E+02 0.0041 21.3 6.1 67 175-250 13-85 (137)
340 TIGR00725 conserved hypothetic 32.3 86 0.0019 24.1 4.1 39 235-275 84-124 (159)
341 PLN02696 1-deoxy-D-xylulose-5- 32.2 4.1E+02 0.0088 24.7 8.8 83 186-273 92-180 (454)
342 PRK11891 aspartate carbamoyltr 32.0 2.2E+02 0.0047 26.2 7.1 133 108-251 174-317 (429)
343 cd01715 ETF_alpha The electron 31.9 1.1E+02 0.0024 23.6 4.9 48 42-89 70-117 (168)
344 PF00185 OTCace: Aspartate/orn 31.8 2.4E+02 0.0051 21.7 6.5 72 174-252 2-83 (158)
345 COG1648 CysG Siroheme synthase 31.7 2.8E+02 0.0062 22.5 12.5 77 201-281 35-112 (210)
346 cd03129 GAT1_Peptidase_E_like 31.2 2.8E+02 0.0061 22.3 8.0 45 232-276 70-124 (210)
347 PRK10100 DNA-binding transcrip 30.8 1.9E+02 0.004 23.7 6.1 74 235-311 45-127 (216)
348 TIGR00243 Dxr 1-deoxy-D-xylulo 30.8 3.8E+02 0.0083 24.3 8.2 94 173-273 26-124 (389)
349 COG0062 Uncharacterized conser 30.7 2.9E+02 0.0063 22.4 8.0 100 173-276 49-161 (203)
350 KOG0121 Nuclear cap-binding pr 30.7 82 0.0018 23.1 3.4 34 176-209 37-70 (153)
351 PRK09545 znuA high-affinity zi 30.6 3.7E+02 0.008 23.5 9.8 92 235-327 66-185 (311)
352 PF14359 DUF4406: Domain of un 30.6 93 0.002 21.4 3.6 33 238-270 55-90 (92)
353 PF01976 DUF116: Protein of un 30.5 1.5E+02 0.0032 22.9 5.1 41 45-85 96-136 (158)
354 cd05564 PTS_IIB_chitobiose_lic 30.2 1.1E+02 0.0025 21.0 4.1 69 204-273 3-78 (96)
355 PRK08192 aspartate carbamoyltr 30.1 2.6E+02 0.0056 24.8 7.2 135 108-251 92-235 (338)
356 PF02571 CbiJ: Precorrin-6x re 30.0 3.4E+02 0.0073 22.8 9.5 96 173-278 130-231 (249)
357 PRK12464 1-deoxy-D-xylulose 5- 30.0 3.7E+02 0.0081 24.3 8.0 94 173-273 21-117 (383)
358 PRK06436 glycerate dehydrogena 30.0 1.7E+02 0.0037 25.5 6.0 39 234-272 165-208 (303)
359 TIGR00730 conserved hypothetic 30.0 2.1E+02 0.0046 22.5 6.0 40 234-275 88-135 (178)
360 COG1273 Ku-homolog [Replicatio 29.9 1.6E+02 0.0035 24.8 5.4 134 214-354 79-230 (278)
361 PRK14189 bifunctional 5,10-met 29.8 3.7E+02 0.0079 23.2 7.9 78 190-270 143-227 (285)
362 PF00533 BRCT: BRCA1 C Terminu 29.8 1.1E+02 0.0023 19.5 3.9 64 200-272 7-71 (78)
363 COG3854 SpoIIIAA ncharacterize 29.6 1.6E+02 0.0034 24.6 5.2 48 45-92 208-256 (308)
364 PF02310 B12-binding: B12 bind 29.5 1.8E+02 0.0039 20.7 5.4 19 45-63 41-59 (121)
365 TIGR00557 pdxA 4-hydroxythreon 29.4 1.8E+02 0.0039 25.5 6.0 77 222-308 230-316 (320)
366 cd05776 DNA_polB_alpha_exo ina 29.3 95 0.0021 25.7 4.3 41 41-81 83-124 (234)
367 PRK08328 hypothetical protein; 29.3 2.2E+02 0.0047 23.5 6.4 46 231-277 107-154 (231)
368 TIGR01851 argC_other N-acetyl- 29.3 1.6E+02 0.0035 25.7 5.6 62 190-270 15-77 (310)
369 PF07302 AroM: AroM protein; 29.1 1.7E+02 0.0037 24.0 5.4 39 46-84 169-207 (221)
370 PRK13266 Thf1-like protein; Re 29.1 2.3E+02 0.0049 23.4 6.1 46 294-339 69-115 (225)
371 TIGR01850 argC N-acetyl-gamma- 28.7 1.4E+02 0.0029 26.6 5.3 81 191-271 15-97 (346)
372 PRK05312 pdxA 4-hydroxythreoni 28.1 2E+02 0.0042 25.5 6.0 76 223-308 243-328 (336)
373 TIGR03787 marine_sort_RR prote 27.7 3.2E+02 0.0069 21.8 8.7 74 234-310 34-119 (227)
374 TIGR00035 asp_race aspartate r 27.6 2.9E+02 0.0064 22.7 6.9 92 176-272 3-104 (229)
375 PRK13931 stationary phase surv 27.6 3E+02 0.0065 23.3 6.8 34 54-87 86-129 (261)
376 PRK10637 cysG siroheme synthas 27.4 5.1E+02 0.011 24.1 14.7 77 201-281 35-112 (457)
377 cd05781 DNA_polB_B3_exo DEDDy 27.4 1.3E+02 0.0028 23.9 4.5 43 40-82 48-91 (188)
378 PRK13837 two-component VirA-li 27.3 3.8E+02 0.0081 27.3 8.8 103 203-310 699-813 (828)
379 PLN03060 inositol phosphatase- 27.3 3.2E+02 0.007 22.1 6.5 45 295-339 68-113 (206)
380 PLN02683 pyruvate dehydrogenas 27.1 2.2E+02 0.0048 25.4 6.3 75 227-310 264-351 (356)
381 PF11019 DUF2608: Protein of u 27.0 73 0.0016 26.8 3.2 54 177-231 155-209 (252)
382 cd06533 Glyco_transf_WecG_TagA 27.0 84 0.0018 24.5 3.4 79 2-89 46-134 (171)
383 PRK13303 L-aspartate dehydroge 26.8 2.7E+02 0.0059 23.6 6.6 79 191-275 15-94 (265)
384 cd01453 vWA_transcription_fact 26.7 3.2E+02 0.0069 21.5 6.7 53 189-242 125-177 (183)
385 PRK00232 pdxA 4-hydroxythreoni 26.3 2.1E+02 0.0045 25.3 5.8 78 222-309 237-324 (332)
386 PRK05395 3-dehydroquinate dehy 26.3 1.3E+02 0.0029 22.7 4.0 61 245-309 71-140 (146)
387 cd01985 ETF The electron trans 25.9 1.4E+02 0.003 23.4 4.5 47 43-89 79-125 (181)
388 TIGR00695 uxuA mannonate dehyd 25.8 81 0.0018 28.5 3.3 22 256-277 86-107 (394)
389 PRK13900 type IV secretion sys 25.8 2.4E+02 0.0051 25.0 6.2 48 44-91 224-272 (332)
390 KOG3076 5'-phosphoribosylglyci 25.7 1.6E+02 0.0035 23.4 4.5 44 45-91 77-120 (206)
391 cd05777 DNA_polB_delta_exo DED 25.7 1.2E+02 0.0027 24.9 4.3 41 41-81 72-113 (230)
392 PRK13761 hypothetical protein; 25.6 3.8E+02 0.0083 22.1 9.1 94 240-346 148-243 (248)
393 COG0036 Rpe Pentose-5-phosphat 25.6 3.8E+02 0.0082 22.0 11.8 73 41-125 15-93 (220)
394 PF04166 PdxA: Pyridoxal phosp 25.5 91 0.002 26.9 3.5 77 222-308 211-297 (298)
395 PF09949 DUF2183: Uncharacteri 25.5 1.7E+02 0.0036 20.5 4.2 33 189-221 52-86 (100)
396 cd01141 TroA_d Periplasmic bin 25.4 1.5E+02 0.0032 23.3 4.6 36 49-85 63-98 (186)
397 PF02585 PIG-L: GlcNAc-PI de-N 25.2 55 0.0012 23.9 2.0 24 42-65 87-110 (128)
398 PRK14852 hypothetical protein; 25.2 3.4E+02 0.0073 28.1 7.7 55 224-278 403-461 (989)
399 PF10727 Rossmann-like: Rossma 25.2 1.4E+02 0.003 22.0 4.0 31 233-264 59-89 (127)
400 PRK08223 hypothetical protein; 25.0 2.7E+02 0.0058 24.0 6.2 47 230-276 105-154 (287)
401 PLN02819 lysine-ketoglutarate 24.9 4E+02 0.0086 28.0 8.3 69 204-273 608-679 (1042)
402 TIGR00670 asp_carb_tr aspartat 24.9 4.6E+02 0.01 22.8 12.9 133 107-251 86-225 (301)
403 TIGR03855 NAD_NadX aspartate d 24.9 2.4E+02 0.0052 23.3 5.7 60 212-276 11-71 (229)
404 COG1052 LdhA Lactate dehydroge 24.8 3.6E+02 0.0077 23.8 7.1 41 236-276 194-239 (324)
405 COG0416 PlsX Fatty acid/phosph 24.7 4.9E+02 0.011 23.0 8.7 132 116-264 96-244 (338)
406 cd01145 TroA_c Periplasmic bin 24.7 3.2E+02 0.007 21.9 6.5 92 236-327 45-148 (203)
407 PRK08300 acetaldehyde dehydrog 24.7 3.9E+02 0.0085 23.2 7.1 92 174-273 4-101 (302)
408 PF04127 DFP: DNA / pantothena 24.6 1.3E+02 0.0029 23.8 4.1 13 1-13 42-54 (185)
409 COG4566 TtrR Response regulato 24.6 3.7E+02 0.008 21.6 8.2 103 211-313 15-124 (202)
410 PF02844 GARS_N: Phosphoribosy 24.5 1.3E+02 0.0028 21.1 3.5 44 40-83 47-90 (100)
411 PRK14350 ligA NAD-dependent DN 24.4 2.2E+02 0.0047 28.1 6.1 59 202-271 597-657 (669)
412 PRK03359 putative electron tra 24.2 1.7E+02 0.0038 24.6 4.9 47 42-88 99-148 (256)
413 PRK09219 xanthine phosphoribos 24.1 1.8E+02 0.0039 23.2 4.7 39 46-85 41-79 (189)
414 cd01539 PBP1_GGBP Periplasmic 24.0 2.3E+02 0.0049 24.3 5.9 34 242-275 57-91 (303)
415 cd05784 DNA_polB_II_exo DEDDy 24.0 1.6E+02 0.0035 23.5 4.5 42 40-81 51-93 (193)
416 PRK02746 pdxA 4-hydroxythreoni 24.0 5.2E+02 0.011 23.0 8.2 75 224-308 244-336 (345)
417 PLN02285 methionyl-tRNA formyl 23.9 2.8E+02 0.006 24.5 6.3 91 172-262 4-113 (334)
418 PRK01909 pdxA 4-hydroxythreoni 23.8 2.6E+02 0.0056 24.7 5.9 77 222-308 233-319 (329)
419 cd05785 DNA_polB_like2_exo Unc 23.8 1.5E+02 0.0032 24.1 4.3 42 41-82 59-101 (207)
420 PRK00257 erythronate-4-phospha 23.6 2.7E+02 0.0058 25.2 6.2 14 235-248 160-173 (381)
421 COG0745 OmpR Response regulato 23.3 4.3E+02 0.0093 21.8 8.5 108 204-311 3-118 (229)
422 cd07409 MPP_CD73_N CD73 ecto-5 23.3 1.8E+02 0.0039 24.8 5.0 47 45-91 172-218 (281)
423 KOG2741 Dimeric dihydrodiol de 23.3 5.3E+02 0.012 22.9 7.9 79 189-272 18-102 (351)
424 PRK06728 aspartate-semialdehyd 23.2 4.7E+02 0.01 23.3 7.5 87 175-270 6-96 (347)
425 PLN02331 phosphoribosylglycina 23.1 4E+02 0.0086 21.7 6.6 13 295-307 163-175 (207)
426 PRK05567 inosine 5'-monophosph 22.9 1.8E+02 0.0039 27.3 5.3 70 240-309 9-87 (486)
427 cd05160 DEDDy_DNA_polB_exo DED 22.5 1.5E+02 0.0033 23.5 4.2 42 41-82 64-106 (199)
428 PF13905 Thioredoxin_8: Thiore 22.3 1.8E+02 0.0039 19.4 4.1 50 174-223 2-57 (95)
429 PRK14142 heat shock protein Gr 22.2 3E+02 0.0064 22.7 5.6 48 298-346 49-96 (223)
430 TIGR01012 Sa_S2_E_A ribosomal 22.1 4.2E+02 0.0092 21.3 10.5 83 197-281 57-147 (196)
431 PRK13398 3-deoxy-7-phosphohept 22.0 5E+02 0.011 22.1 8.3 97 176-274 28-142 (266)
432 TIGR01088 aroQ 3-dehydroquinat 21.8 2.1E+02 0.0046 21.5 4.3 27 245-271 69-96 (141)
433 TIGR00658 orni_carb_tr ornithi 21.7 4.5E+02 0.0097 22.9 7.1 128 108-250 86-224 (304)
434 PF11264 ThylakoidFormat: Thyl 21.6 3.2E+02 0.0069 22.4 5.7 46 294-339 64-110 (216)
435 PRK04284 ornithine carbamoyltr 21.6 4.1E+02 0.0089 23.5 6.9 131 108-251 92-233 (332)
436 COG4109 Predicted transcriptio 21.3 3.9E+02 0.0085 23.8 6.4 101 200-307 113-218 (432)
437 cd05779 DNA_polB_epsilon_exo D 21.3 1.9E+02 0.0041 23.4 4.4 42 41-82 74-116 (204)
438 PRK05299 rpsB 30S ribosomal pr 21.2 4.3E+02 0.0093 22.4 6.6 38 243-281 158-196 (258)
439 PRK06015 keto-hydroxyglutarate 21.2 4.5E+02 0.0097 21.3 7.7 16 226-241 100-115 (201)
440 PRK12342 hypothetical protein; 21.2 2.1E+02 0.0046 24.1 4.8 45 44-88 98-145 (254)
441 PF04430 DUF498: Protein of un 21.2 2E+02 0.0044 20.4 4.1 23 189-211 41-63 (110)
442 PF01993 MTD: methylene-5,6,7, 21.1 2.7E+02 0.0058 23.2 5.0 43 46-88 50-95 (276)
443 PF04392 ABC_sub_bind: ABC tra 20.9 1.8E+02 0.0039 25.0 4.6 42 43-87 47-89 (294)
444 COG0503 Apt Adenine/guanine ph 20.6 1.9E+02 0.0041 22.8 4.2 40 46-86 44-83 (179)
445 PRK11199 tyrA bifunctional cho 20.6 4E+02 0.0088 24.0 6.8 32 175-209 99-130 (374)
446 PRK00436 argC N-acetyl-gamma-g 20.5 2.7E+02 0.0059 24.7 5.6 79 191-271 17-97 (343)
447 PF07685 GATase_3: CobB/CobQ-l 20.5 95 0.0021 23.8 2.5 34 239-272 4-48 (158)
448 cd05568 PTS_IIB_bgl_like PTS_I 20.4 87 0.0019 20.6 2.1 23 228-250 31-54 (85)
449 PRK14851 hypothetical protein; 20.4 5.1E+02 0.011 25.7 7.8 48 229-276 120-170 (679)
450 TIGR02782 TrbB_P P-type conjug 20.4 3E+02 0.0065 23.9 5.8 50 43-92 192-242 (299)
451 PRK12480 D-lactate dehydrogena 20.2 2E+02 0.0043 25.4 4.7 43 234-276 190-237 (330)
452 PRK14175 bifunctional 5,10-met 20.0 5.7E+02 0.012 22.1 7.2 61 190-251 143-210 (286)
No 1
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=4.8e-55 Score=398.72 Aligned_cols=372 Identities=81% Similarity=1.331 Sum_probs=318.0
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV 80 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~ 80 (377)
+||+|+|+|+..+..+...++.+.+...++.+......+.+....++.+.+++.+||+||+|++....+.++.+++..++
T Consensus 90 ~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~i 169 (465)
T PLN02871 90 MGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCV 169 (465)
T ss_pred CCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCC
Confidence 59999999988765555566666666555555544444445555688899999999999999876666666667888999
Q ss_pred CEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCc
Q 017114 81 PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS 160 (377)
Q Consensus 81 ~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~ 160 (377)
|+|+++|++.+.........+..+..+.+.+++++.+|.++++|+...+.+.+.+..+.+++.++|||+|.+.|.+....
T Consensus 170 p~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~ 249 (465)
T PLN02871 170 PLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRS 249 (465)
T ss_pred CEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCcccc
Confidence 99999999876554433323333334456788899999999999999999998775556899999999999988776544
Q ss_pred hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHH
Q 017114 161 SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY 240 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~ 240 (377)
...+.++....+++++|+|+|++.+.||++.++++++.+++++|+|+|+|++.+.+++++.+.+|.|.|+++++|+..+|
T Consensus 250 ~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~ 329 (465)
T PLN02871 250 EEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAY 329 (465)
T ss_pred HHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHH
Confidence 44444443334567889999999999999999999999999999999999999999998888899999999999999999
Q ss_pred hcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCC---CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHH
Q 017114 241 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD---GKIGYLFNPGDLDDCLSKLEPLLYNQELRET 317 (377)
Q Consensus 241 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~ 317 (377)
+.||++|+||..|++|++++|||+||+|||+++.++..|++ ++ +.+|++++++|+++++++|.++++|++.+++
T Consensus 330 ~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv---~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~ 406 (465)
T PLN02871 330 ASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGGIPDII---PPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRER 406 (465)
T ss_pred HHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCCcHhhh---hcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHH
Confidence 99999999999999999999999999999999999999999 66 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhhcCCcccc
Q 017114 318 MGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRKKRAQLLRPIQWLAKRIFPSAEVN 375 (377)
Q Consensus 318 ~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
+++++++.+++|+|+.+++++++..|+++++..++++.+..++.++....++|..++|
T Consensus 407 ~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (465)
T PLN02871 407 MGAAAREEVEKWDWRAATRKLRNEQYSAAIWFWRKKRAQLLGPVQWLPAQLFPAPEVN 464 (465)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccC
Confidence 9999999999999999999999668999999999999999999999999999999887
No 2
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=8.2e-44 Score=321.41 Aligned_cols=287 Identities=18% Similarity=0.245 Sum_probs=236.3
Q ss_pred cCCCEEEeCCCchh-HHHHHHHHHhhCCCEEEEeccCCcccccc---cccccchhhHHHHHHHHHhcCCeeEecChhHHH
Q 017114 54 FKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPR---YTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGK 129 (377)
Q Consensus 54 ~~pDii~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 129 (377)
.+||+||+|.+... ...+..+++..++|+++++||.++..... .......+....+++++++.+|.++++|+...+
T Consensus 105 ~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 184 (412)
T PRK10307 105 WRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLLRRFDNVSTISRSMMN 184 (412)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHHhhCCEEEecCHHHHH
Confidence 68999999987544 34456678889999999999977643211 112233344556788999999999999999999
Q ss_pred HHHHhcccCCCcEEEecCCCCCCCCCCccCc--hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC---CCceE
Q 017114 130 DLEAARVTAANKIRIWKKGVDSESFHPRFRS--SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---PEARI 204 (377)
Q Consensus 130 ~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l---~~~~l 204 (377)
.+.+.+ .+..++.++|||+|.+.+.+.... ...+..+.. .+++++++|+|++.+.||++.+++|++.+ ++++|
T Consensus 185 ~~~~~~-~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l 262 (412)
T PRK10307 185 KAREKG-VAAEKVIFFPNWSEVARFQPVADADVDALRAQLGL-PDGKKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIF 262 (412)
T ss_pred HHHHcC-CCcccEEEECCCcCHhhcCCCCccchHHHHHHcCC-CCCCEEEEEcCccccccCHHHHHHHHHHhccCCCeEE
Confidence 998764 366789999999999887654322 123333332 34568999999999999999999999877 57999
Q ss_pred EEEecCccHHHHHHhhcCC---CEEEccccCchhHHHHHhcCCEEEeccCCcc----cchHHHHHHhcCCCeEEecCCC-
Q 017114 205 AFIGDGPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVMPSESET----LGLVVLEAMSSGIPVVGVRAGG- 276 (377)
Q Consensus 205 ~i~G~g~~~~~l~~~~~~~---~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~----~~~~~~Ea~a~G~PvI~~~~~~- 276 (377)
+|+|+|+..+.++++++.. +|.|.|+++++++..+|++||++++|+..|+ +|++++|||+||+|||+++.++
T Consensus 263 ~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~ 342 (412)
T PRK10307 263 VICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT 342 (412)
T ss_pred EEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc
Confidence 9999999888888776532 6999999999999999999999999999887 6889999999999999999876
Q ss_pred -CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHH
Q 017114 277 -IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYNAAIW 348 (377)
Q Consensus 277 -~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~ly~~~~~ 348 (377)
..+++ . ++|++++++|+++++++|.++++|++.+++|++++++.++ +|||+.+++++. .+|++++.
T Consensus 343 ~~~~~i---~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~~~~~~~ 410 (412)
T PRK10307 343 ELGQLV---E--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFI-ADIRGLVA 410 (412)
T ss_pred hHHHHH---h--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHhc
Confidence 45777 4 5899999999999999999999999999999999999985 799999999999 69988764
No 3
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=6.9e-43 Score=313.59 Aligned_cols=327 Identities=21% Similarity=0.275 Sum_probs=249.9
Q ss_pred CCcEEEEEeeCCCCC----ccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchh-HHHHHHHH
Q 017114 1 MGDEVMVVTTHEGVP----QEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIM-VFGALIIA 75 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~-~~~~~~~~ 75 (377)
+||+|+|+|+..+.. ....++.+..++.............+.....+.+.+++.+||+||+|++... ...+.+++
T Consensus 30 ~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~ 109 (398)
T cd03796 30 RGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLLRNILIRERITIVHGHQAFSALAHEALLHA 109 (398)
T ss_pred cCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHh
Confidence 599999999764321 1223445544443222111112222344567778888899999999986433 33455677
Q ss_pred HhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCC
Q 017114 76 KLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFH 155 (377)
Q Consensus 76 ~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~ 155 (377)
+..++|+|++.|+.++.. . ........+.++.++.+|.++++|+...+.+......+.+++.++|||+|.+.|.
T Consensus 110 ~~~~~~~v~t~h~~~~~~--~----~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~ 183 (398)
T cd03796 110 RTMGLKTVFTDHSLFGFA--D----ASSIHTNKLLRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFT 183 (398)
T ss_pred hhcCCcEEEEeccccccc--c----hhhHHhhHHHHHhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcC
Confidence 888999999999865311 0 0111223456778899999999999998876544444668899999999988776
Q ss_pred CccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhcC----CCEEE
Q 017114 156 PRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG----MPAVF 227 (377)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~~----~~v~~ 227 (377)
+.... ..+++++++++|++.+.||++.+++|++.+ ++++++++|+|+..+.+++++.+ .+|.+
T Consensus 184 ~~~~~---------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~ 254 (398)
T cd03796 184 PDPSK---------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVEL 254 (398)
T ss_pred CCccc---------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEE
Confidence 54321 134678999999999999999999999754 78999999999887777776654 35999
Q ss_pred ccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHH
Q 017114 228 TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 307 (377)
Q Consensus 228 ~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 307 (377)
.|+++.+++..+|+.||++++||..|++|++++|||+||+|||+++.++.+|++ .++. +.++ +.|++++++++.+
T Consensus 255 ~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e~i---~~~~-~~~~-~~~~~~l~~~l~~ 329 (398)
T cd03796 255 LGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPEVL---PPDM-ILLA-EPDVESIVRKLEE 329 (398)
T ss_pred eCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchhhe---eCCc-eeec-CCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 5543 4444 4489999999999
Q ss_pred HhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHH
Q 017114 308 LLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIW 348 (377)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~~ 348 (377)
++++......+++++++.+ ++|||+.+++++. ++|+++++
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~~l~~ 370 (398)
T cd03796 330 AISILRTGKHDPWSFHNRVKKMYSWEDVAKRTE-KVYDRILQ 370 (398)
T ss_pred HHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHhc
Confidence 9998766666778888776 5899999999999 79999874
No 4
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2.4e-42 Score=311.77 Aligned_cols=340 Identities=26% Similarity=0.329 Sum_probs=255.6
Q ss_pred CCcEEEEEeeCCCCC-----ccccCceeecccCCCCCcccc--cccc-ccchHHHH-HHHHh--cCCCEEEeCCCchhHH
Q 017114 1 MGDEVMVVTTHEGVP-----QEFYGAKLIGSRSFPCPWYQK--VPLS-LALSPRII-SEVAR--FKPDIIHASSPGIMVF 69 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~-~~i~~--~~pDii~~~~~~~~~~ 69 (377)
+||+|+|+|...... +...++++.++...+...... .... ..+...+. ..++. .+||+||+|.... .+
T Consensus 36 ~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~-~~ 114 (405)
T TIGR03449 36 RGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLS-GQ 114 (405)
T ss_pred CCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHH-HH
Confidence 599999999754321 123456665553322221111 1100 01112222 33443 4799999998433 34
Q ss_pred HHHHHHHhhCCCEEEEeccCCcccccccc--cccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecC
Q 017114 70 GALIIAKLLCVPIVMSYHTHVPVYIPRYT--FSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKK 147 (377)
Q Consensus 70 ~~~~~~~~~~~~~i~~~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~ 147 (377)
.+..+++..++|+|++.|+.......... ........+..++.+++.+|.++++|+...+.+...++.+.+++.+|||
T Consensus 115 ~~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~n 194 (405)
T TIGR03449 115 VGWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEARDLVRHYDADPDRIDVVAP 194 (405)
T ss_pred HHHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECC
Confidence 45556778899999999986432111000 0111122334567788999999999999888888776656788999999
Q ss_pred CCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CC--ceEEEEec----C-ccHHHH
Q 017114 148 GVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE--ARIAFIGD----G-PYREEL 216 (377)
Q Consensus 148 gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~--~~l~i~G~----g-~~~~~l 216 (377)
|+|.+.+.+. .....+.++.. .+++++|+|+|++.+.||++.+++|++.+ ++ ++++++|+ | +..+.+
T Consensus 195 gvd~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l 272 (405)
T TIGR03449 195 GADLERFRPG-DRATERARLGL-PLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDAL 272 (405)
T ss_pred CcCHHHcCCC-cHHHHHHhcCC-CCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHH
Confidence 9999888654 22333334332 34678999999999999999999999876 55 88999995 3 445666
Q ss_pred HHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEE
Q 017114 217 EKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYL 292 (377)
Q Consensus 217 ~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~ 292 (377)
+++++. .+|.+.|+++++++..+|+.||++++||..|++|++++|||++|+|||+++.++.++++ .++.+|++
T Consensus 273 ~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i---~~~~~g~~ 349 (405)
T TIGR03449 273 IELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAV---ADGETGLL 349 (405)
T ss_pred HHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHhhh---ccCCceEE
Confidence 666553 36999999999999999999999999999999999999999999999999999999999 88899999
Q ss_pred eCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 017114 293 FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 347 (377)
Q Consensus 293 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~ 347 (377)
++++|+++++++|.+++++++.++++++++++.+++|+|+.+++++. .+|++++
T Consensus 350 ~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~~~~~~-~~y~~~~ 403 (405)
T TIGR03449 350 VDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLL-SSYRDAL 403 (405)
T ss_pred CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHh
Confidence 99999999999999999999999999999999888999999999999 6998875
No 5
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=9.2e-42 Score=304.76 Aligned_cols=277 Identities=22% Similarity=0.307 Sum_probs=226.7
Q ss_pred HHHHHhcCCCEEEeCCCchhHHHHHHHHH--hhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecCh
Q 017114 48 ISEVARFKPDIIHASSPGIMVFGALIIAK--LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 125 (377)
Q Consensus 48 ~~~i~~~~pDii~~~~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 125 (377)
...+++.+||+||+|........ ..+++ ..+.|+++++|+...... . .........+..++++|.++++|+
T Consensus 111 ~~~~~~~~~diihaH~~~~~~~~-~~~~~~~~~~~~~~~t~Hg~d~~~~-~-----~~~~~~~~~~~~~~~ad~vv~~S~ 183 (406)
T PRK15427 111 AQVATPFVADVFIAHFGPAGVTA-AKLRELGVLRGKIATIFHGIDISSR-E-----VLNHYTPEYQQLFRRGDLMLPISD 183 (406)
T ss_pred hhhhccCCCCEEEEcCChHHHHH-HHHHHhCCCCCCeEEEEcccccccc-h-----hhhhhhHHHHHHHHhCCEEEECCH
Confidence 34456779999999986443333 33333 234577889997532110 0 001112245567789999999999
Q ss_pred hHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CC
Q 017114 126 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE 201 (377)
Q Consensus 126 ~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~ 201 (377)
..++.+.+.+ .+.+++.++|||+|.+.|.+.... ...+.+.|+++|++.+.||++.+++|++.+ ++
T Consensus 184 ~~~~~l~~~g-~~~~ki~vi~nGvd~~~f~~~~~~---------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 253 (406)
T PRK15427 184 LWAGRLQKMG-CPPEKIAVSRMGVDMTRFSPRPVK---------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVA 253 (406)
T ss_pred HHHHHHHHcC-CCHHHEEEcCCCCCHHHcCCCccc---------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCC
Confidence 9999998764 467899999999999887653221 123557899999999999999999999876 57
Q ss_pred ceEEEEecCccHHHHHHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccCC------cccchHHHHHHhcCCCeEE
Q 017114 202 ARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSES------ETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 202 ~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~------e~~~~~~~Ea~a~G~PvI~ 271 (377)
++++|+|+|+..+.+++.+++ .+|.|.|+++++++.++|+.||++|+||.. ||+|++++|||+||+|||+
T Consensus 254 ~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~ 333 (406)
T PRK15427 254 FRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS 333 (406)
T ss_pred EEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE
Confidence 999999999988888887764 369999999999999999999999999974 9999999999999999999
Q ss_pred ecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 017114 272 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~ 345 (377)
|+.++.+|++ .++.+|++++++|+++++++|.++++ |++.++++++++++.+ ++|+|+.+++++. .+|+.
T Consensus 334 t~~~g~~E~v---~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~-~~~~~ 405 (406)
T PRK15427 334 TLHSGIPELV---EADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELA-SLLQA 405 (406)
T ss_pred eCCCCchhhh---cCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhh
Confidence 9999999999 88999999999999999999999999 9999999999999998 5899999999999 57764
No 6
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=3.1e-41 Score=305.51 Aligned_cols=336 Identities=21% Similarity=0.266 Sum_probs=239.2
Q ss_pred CCc--EEEEEeeCCCC-------C----ccccCceeecccCCCCCcccc---ccccccchHHHHHHHHhc--CCCEEEeC
Q 017114 1 MGD--EVMVVTTHEGV-------P----QEFYGAKLIGSRSFPCPWYQK---VPLSLALSPRIISEVARF--KPDIIHAS 62 (377)
Q Consensus 1 ~G~--~V~v~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~--~pDii~~~ 62 (377)
+|| +|+|+|..... . +...++++.+++..+..+... ......+...+.+.+++. +|||||+|
T Consensus 42 ~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h 121 (439)
T TIGR02472 42 RSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELADNLLQHLRQQGHLPDLIHAH 121 (439)
T ss_pred CCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEc
Confidence 476 99999963211 0 113456666554332211110 011123335677777754 79999999
Q ss_pred CCchhHHHHHHHHHhhCCCEEEEeccCCccccccc-----ccccch---hh--HHHHHHHHHhcCCeeEecChhHH-HHH
Q 017114 63 SPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY-----TFSWLV---KP--MWLVIKFLHRAADLTLVPSVAIG-KDL 131 (377)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-----~~~~~~---~~--~~~~~~~~~~~~d~ii~~s~~~~-~~~ 131 (377)
++. ..+.+.++++..++|+|++.|+......... ...... .. ....++..++.+|.++++|.... +.+
T Consensus 122 ~~~-~~~~~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 200 (439)
T TIGR02472 122 YAD-AGYVGARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEETLAHASLVITSTHQEIEEQY 200 (439)
T ss_pred chh-HHHHHHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHHHHHhCCEEEECCHHHHHHHH
Confidence 854 4455566788889999999997532211100 000000 00 11246788999999999986543 334
Q ss_pred HHhcccCCCcEEEecCCCCCCCCCCccCchH---HHH--HhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC----Cc
Q 017114 132 EAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRW--RLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP----EA 202 (377)
Q Consensus 132 ~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~--~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~----~~ 202 (377)
....+.+.+++.+||||+|.+.|.+...... .+. +.....++.++++++|++.+.||++.+++|++.++ +.
T Consensus 201 ~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~ 280 (439)
T TIGR02472 201 ALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMA 280 (439)
T ss_pred HhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhc
Confidence 4433456789999999999998876432211 111 11112346779999999999999999999997542 24
Q ss_pred eEE-EEecCccHHH-----------HHHhhc----CCCEEEccccCchhHHHHHhcC----CEEEeccCCcccchHHHHH
Q 017114 203 RIA-FIGDGPYREE-----------LEKMFT----GMPAVFTGMLLGEELSQAYASG----DVFVMPSESETLGLVVLEA 262 (377)
Q Consensus 203 ~l~-i~G~g~~~~~-----------l~~~~~----~~~v~~~g~~~~~~~~~~~~~a----di~v~ps~~e~~~~~~~Ea 262 (377)
+++ ++|+|+..+. +..++. ..+|.|.|+++.+++..+|+.| |++|+||..|+||++++||
T Consensus 281 ~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEA 360 (439)
T TIGR02472 281 NLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEA 360 (439)
T ss_pred cEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHH
Confidence 444 5677654321 222222 2369999999999999999987 9999999999999999999
Q ss_pred HhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Q 017114 263 MSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRN 340 (377)
Q Consensus 263 ~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~ 340 (377)
||||+|||+|+.++.+|++ .++.+|+++++.|+++++++|.++++|++.++++++++++.+ ++|||+.+++++.+
T Consensus 361 ma~G~PvV~s~~gg~~eiv---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~ 436 (439)
T TIGR02472 361 AACGLPIVATDDGGPRDII---ANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLR 436 (439)
T ss_pred HHhCCCEEEeCCCCcHHHh---cCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999 888999999999999999999999999999999999999988 58999999999984
No 7
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.4e-41 Score=300.54 Aligned_cols=331 Identities=24% Similarity=0.404 Sum_probs=252.5
Q ss_pred CCcEEEEEeeCCCCC--ccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHh-
Q 017114 1 MGDEVMVVTTHEGVP--QEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKL- 77 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~- 77 (377)
+||+|+|+|...... ....+.....+.....+......+.......+.+.+++.+||+||+|.+....+...+..+.
T Consensus 28 ~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~ 107 (371)
T cd04962 28 RGHEVHFITSSRPFRLDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREIL 107 (371)
T ss_pred cCCceEEEecCCCcchhhhccCeEEEEecccccchhhcchhHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhc
Confidence 599999999764321 12223333322222122222222334445778888999999999998754333333333232
Q ss_pred --hCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCC
Q 017114 78 --LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFH 155 (377)
Q Consensus 78 --~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~ 155 (377)
.++|+++++|+........ ...+..+.+..++.+|.+++.|+...+.+.+.+. ...++.++|||+|...+.
T Consensus 108 ~~~~~~~i~~~h~~~~~~~~~------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~i~vi~n~~~~~~~~ 180 (371)
T cd04962 108 GKKDLPVVTTLHGTDITLVGQ------DPSFQPATRFSIEKSDGVTAVSESLRQETYELFD-ITKEIEVIPNFVDEDRFR 180 (371)
T ss_pred CcCCCcEEEEEcCCccccccc------cccchHHHHHHHhhCCEEEEcCHHHHHHHHHhcC-CcCCEEEecCCcCHhhcC
Confidence 3899999999753221111 1122346678889999999999999999887764 467899999999987765
Q ss_pred CccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC---CCceEEEEecCccHHHHHHhhcC----CCEEEc
Q 017114 156 PRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTG----MPAVFT 228 (377)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l---~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~ 228 (377)
+... ...+.... ..+++.+++++|++.+.||++.++++++.+ .+++++++|.|+..+.+++.+.+ .+|.+.
T Consensus 181 ~~~~-~~~~~~~~-~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~ 258 (371)
T cd04962 181 PKPD-EALKRRLG-APEGEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFL 258 (371)
T ss_pred CCch-HHHHHhcC-CCCCCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEe
Confidence 4422 22222222 244678899999999999999999999876 46899999999888877776653 369999
Q ss_pred cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHH
Q 017114 229 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 308 (377)
|+. +++..+|+.||++++||..|++|++++|||++|+|||+++.++..+++ .++.+|++++++|++++++++.++
T Consensus 259 g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e~i---~~~~~G~~~~~~~~~~l~~~i~~l 333 (371)
T cd04962 259 GKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPEVV---KHGETGFLVDVGDVEAMAEYALSL 333 (371)
T ss_pred cCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchhhh---cCCCceEEcCCCCHHHHHHHHHHH
Confidence 987 689999999999999999999999999999999999999999999999 888999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHH
Q 017114 309 LYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~ 346 (377)
++|++.+.++++++++.+ ++|+|+.+++++. .+|+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~~~ 371 (371)
T cd04962 334 LEDDELWQEFSRAARNRAAERFDSERIVPQYE-ALYRRL 371 (371)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhC
Confidence 999999999999999986 6899999999999 688753
No 8
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=2.9e-41 Score=301.55 Aligned_cols=326 Identities=23% Similarity=0.308 Sum_probs=247.7
Q ss_pred CCcEEEEEeeCCCCC--c--cccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHH
Q 017114 1 MGDEVMVVTTHEGVP--Q--EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK 76 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~ 76 (377)
+||+++|++..+... . ...+++++.+... . ...+....++.+.+++.+||+||+|+... ..+...++
T Consensus 30 ~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~---~----~~~~~~~~~l~~~l~~~~~Divh~~~~~~--~~~~~~~~ 100 (374)
T TIGR03088 30 DRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQ---P----GKDVAVYPQLYRLLRQLRPDIVHTRNLAA--LEAQLPAA 100 (374)
T ss_pred cccceEEEEcCCCChhHHHHHhcCceEEEeCCC---C----CCChHHHHHHHHHHHHhCCCEEEEcchhH--HHHHHHHH
Confidence 478888888544221 1 1123444433211 1 12244567889999999999999997532 22334556
Q ss_pred hhCCCEE-EEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCC
Q 017114 77 LLCVPIV-MSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFH 155 (377)
Q Consensus 77 ~~~~~~i-~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~ 155 (377)
..++|.. .+.|........ . ....+..+.+...+.+|.++++|+...+.+.+.++.+.+++.+++||+|.+.+.
T Consensus 101 ~~~~~~~i~~~h~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~ 175 (374)
T TIGR03088 101 LAGVPARIHGEHGRDVFDLD--G---SNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFH 175 (374)
T ss_pred hcCCCeEEEeecCcccccch--h---hHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccC
Confidence 6677753 333432111100 0 011223455666778999999999999999887666678899999999998876
Q ss_pred CccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----C----CceEEEEecCccHHHHHHhhcCC----
Q 017114 156 PRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P----EARIAFIGDGPYREELEKMFTGM---- 223 (377)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~----~~~l~i~G~g~~~~~l~~~~~~~---- 223 (377)
+................++++++++|++.+.||++.+++|++.+ + +++++++|+|+..+.+++.+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~ 255 (374)
T TIGR03088 176 PSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAH 255 (374)
T ss_pred CCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcc
Confidence 54322222222222345778999999999999999999999765 2 68999999998888887776543
Q ss_pred CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHH
Q 017114 224 PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 224 ~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
++.+.|.. +|+..+|+.||++|+||..||+|++++|||+||+|||+++.++..|++ .++.+|++++++|++++++
T Consensus 256 ~v~~~g~~--~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i---~~~~~g~~~~~~d~~~la~ 330 (374)
T TIGR03088 256 LVWLPGER--DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPELV---QHGVTGALVPPGDAVALAR 330 (374)
T ss_pred eEEEcCCc--CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHHHh---cCCCceEEeCCCCHHHHHH
Confidence 57888865 899999999999999999999999999999999999999999999999 8888999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHH
Q 017114 304 KLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~ 346 (377)
++.+++++++.+.++++++++.+ ++|+|+.+++++. .+|+++
T Consensus 331 ~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~y~~~ 373 (374)
T TIGR03088 331 ALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYA-GLYDQL 373 (374)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHh
Confidence 99999999999999999999998 5899999999999 699876
No 9
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.4e-41 Score=299.66 Aligned_cols=331 Identities=41% Similarity=0.669 Sum_probs=265.4
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV 80 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~ 80 (377)
+||+|+++++.......... ....+.....+......+.+.....+.+.+++.+||+||++.+......+..+++..++
T Consensus 30 ~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~ 108 (364)
T cd03814 30 RGHEVLVIAPGPFRESEGPA-RVVPVPSVPLPGYPEIRLALPPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGI 108 (364)
T ss_pred CCCEEEEEeCCchhhccCCC-CceeecccccCcccceEecccchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCC
Confidence 59999999987643221111 22233333333333334445556778888899999999999876665666777888999
Q ss_pred CEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCc
Q 017114 81 PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS 160 (377)
Q Consensus 81 ~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~ 160 (377)
|+++++|+.++...................+.+++.+|.+++.|+...+.+.+.+ ..++.+++||+|.+.+.+....
T Consensus 109 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~ 185 (364)
T cd03814 109 PVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRARG---FRRVRLWPRGVDTELFHPRRRD 185 (364)
T ss_pred CEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccC---CCceeecCCCccccccCccccc
Confidence 9999999987655443333344444466778889999999999999998665543 3578999999999888765443
Q ss_pred hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC---CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHH
Q 017114 161 SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP---EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELS 237 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~---~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~ 237 (377)
...+.... ..+++.++|+|++...||++.++++++.+. +++++++|.++..+.++ ....+|.+.|+++.+++.
T Consensus 186 ~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~--~~~~~v~~~g~~~~~~~~ 261 (364)
T cd03814 186 EALRARLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARARLE--ARYPNVHFLGFLDGEELA 261 (364)
T ss_pred HHHHHHhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHh--ccCCcEEEEeccCHHHHH
Confidence 33333332 456788999999999999999999999883 69999999998777666 234589999999999999
Q ss_pred HHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHH
Q 017114 238 QAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET 317 (377)
Q Consensus 238 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~ 317 (377)
.+|+.||++++|+..|++|++++|||+||+|||+++.++..+++ +++.+|+++++.|.++++++|.+++.|++.+++
T Consensus 262 ~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i---~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~ 338 (364)
T cd03814 262 AAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIV---TDGENGLLVEPGDAEAFAAALAALLADPELRRR 338 (364)
T ss_pred HHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhh---cCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999999 788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017114 318 MGQAARQEMEKYDWRAATRTIRNEQY 343 (377)
Q Consensus 318 ~~~~~~~~~~~~s~~~~~~~~~~~ly 343 (377)
+++++++.+++|+|+.+++++. .+|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~-~~~ 363 (364)
T cd03814 339 MAARARAEAERRSWEAFLDNLL-EAY 363 (364)
T ss_pred HHHHHHHHHhhcCHHHHHHHHH-Hhh
Confidence 9999999998999999999998 566
No 10
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=6.8e-41 Score=298.86 Aligned_cols=283 Identities=31% Similarity=0.446 Sum_probs=235.2
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCee
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 120 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 120 (377)
+.....+...+++.+||+||+|... .......+++..|+|+++++|+.....................++.+++.+|.+
T Consensus 68 ~~~~~~~~~~~~~~~~dvvh~~~~~-~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 146 (367)
T cd05844 68 TGSAPQLRRLLRRHRPDLVHAHFGF-DGVYALPLARRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALF 146 (367)
T ss_pred cccccHHHHHHHhhCCCEEEeccCc-hHHHHHHHHHHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEE
Confidence 4444566668889999999998754 344445577889999999999754322221111111333456677888999999
Q ss_pred EecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC-
Q 017114 121 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL- 199 (377)
Q Consensus 121 i~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l- 199 (377)
+++|+.+++.+.+.+ .+..++.++|||+|.+.+.+.. ...+...++|+|++.+.||++.+++|+..+
T Consensus 147 i~~s~~~~~~~~~~~-~~~~~i~vi~~g~d~~~~~~~~-----------~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 214 (367)
T cd05844 147 IAVSQFIRDRLLALG-FPPEKVHVHPIGVDTAKFTPAT-----------PARRPPRILFVGRFVEKKGPLLLLEAFARLA 214 (367)
T ss_pred EECCHHHHHHHHHcC-CCHHHeEEecCCCCHHhcCCCC-----------CCCCCcEEEEEEeeccccChHHHHHHHHHHH
Confidence 999999999998874 3667899999999988776532 123567899999999999999999999766
Q ss_pred ---CCceEEEEecCccHHHHHHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccC------CcccchHHHHHHhcC
Q 017114 200 ---PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSE------SETLGLVVLEAMSSG 266 (377)
Q Consensus 200 ---~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~------~e~~~~~~~Ea~a~G 266 (377)
++++++++|+|+..+.+++++++ .+|.|.|+++++++..+|+.||++++||. .|++|++++|||+||
T Consensus 215 ~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G 294 (367)
T cd05844 215 RRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASG 294 (367)
T ss_pred HhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcC
Confidence 58999999999888888777654 36999999999999999999999999996 589999999999999
Q ss_pred CCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 017114 267 IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 339 (377)
Q Consensus 267 ~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 339 (377)
+|||+++.++..+++ .++.+|+++++.|+++++++|.++++|++.+.+++.++++.+ ++|+|+.+++++.
T Consensus 295 ~PvI~s~~~~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~ 365 (367)
T cd05844 295 VPVVATRHGGIPEAV---EDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLE 365 (367)
T ss_pred CCEEEeCCCCchhhe---ecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 999999999999999 888999999999999999999999999999999999999998 5899999999886
No 11
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=3.8e-40 Score=300.12 Aligned_cols=295 Identities=20% Similarity=0.287 Sum_probs=221.3
Q ss_pred HHHHHHHh--cCCCEEEeCCCchhHHHHHHHHHh-----hCCCEEEEeccCCcccccc------ccc---cc-chh----
Q 017114 46 RIISEVAR--FKPDIIHASSPGIMVFGALIIAKL-----LCVPIVMSYHTHVPVYIPR------YTF---SW-LVK---- 104 (377)
Q Consensus 46 ~~~~~i~~--~~pDii~~~~~~~~~~~~~~~~~~-----~~~~~i~~~h~~~~~~~~~------~~~---~~-~~~---- 104 (377)
.+...+++ .+|||||+|++... +.+..+++. .++|+|+++|+........ ... .+ ...
T Consensus 107 ~~~~~~~~~~~~pDiiH~h~w~~~-~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
T PRK00654 107 AAAEFAEGLDPRPDIVHAHDWHTG-LIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFY 185 (466)
T ss_pred HHHHHHHhcCCCCceEEECCcHHH-HHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcC
Confidence 34455544 49999999986554 333434433 3799999999864321000 000 00 000
Q ss_pred hHHHHHHHHHhcCCeeEecChhHHHHHHHhc---------ccCCCcEEEecCCCCCCCCCCccCc---------------
Q 017114 105 PMWLVIKFLHRAADLTLVPSVAIGKDLEAAR---------VTAANKIRIWKKGVDSESFHPRFRS--------------- 160 (377)
Q Consensus 105 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~---------~~~~~~i~~i~~gv~~~~~~~~~~~--------------- 160 (377)
....+.+..++.+|.++++|+..++.+.... ..+.+++.+|+||+|.+.|.|....
T Consensus 186 ~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~ 265 (466)
T PRK00654 186 GQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKA 265 (466)
T ss_pred CcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchH
Confidence 0123456678999999999999998886521 1245789999999999988775321
Q ss_pred ---hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCc--cHHHHHHhhcCC--CEEE-ccc
Q 017114 161 ---SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVF-TGM 230 (377)
Q Consensus 161 ---~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~--~~~~l~~~~~~~--~v~~-~g~ 230 (377)
...+.++....++.++++++||+.++||++.+++|++.+ .+++++|+|+|+ ..+.+++++.+. ++.+ .|+
T Consensus 266 ~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~ 345 (466)
T PRK00654 266 ENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGY 345 (466)
T ss_pred HHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 223444444334678999999999999999999999887 479999999875 346666666543 4554 455
Q ss_pred cCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC------CeeEEeCCCCHHHHHHH
Q 017114 231 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG------KIGYLFNPGDLDDCLSK 304 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~l~~~ 304 (377)
+.+.+..+|+.||++|+||.+|+||++++|||+||+|+|+++.++..|.+ .++ .+|+++++.|+++++++
T Consensus 346 -~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v---~~~~~~~~~~~G~lv~~~d~~~la~~ 421 (466)
T PRK00654 346 -DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTV---IDYNPEDGEATGFVFDDFNAEDLLRA 421 (466)
T ss_pred -CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCcccee---ecCCCCCCCCceEEeCCCCHHHHHHH
Confidence 55567789999999999999999999999999999999999999999998 666 89999999999999999
Q ss_pred HHHHhh---CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 017114 305 LEPLLY---NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 348 (377)
Q Consensus 305 i~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~ 348 (377)
|.++++ +++.+.+++.++.+ ++|||+.+++++. ++|+++++
T Consensus 422 i~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~lY~~~~~ 465 (466)
T PRK00654 422 LRRALELYRQPPLWRALQRQAMA--QDFSWDKSAEEYL-ELYRRLLG 465 (466)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhc--cCCChHHHHHHHH-HHHHHHhh
Confidence 999876 67777777776643 5899999999999 79998864
No 12
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.4e-39 Score=292.09 Aligned_cols=330 Identities=20% Similarity=0.247 Sum_probs=234.4
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccc----------cchHHHHHH-HHhcCCCEEEeCCCchhHH
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSL----------ALSPRIISE-VARFKPDIIHASSPGIMVF 69 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-i~~~~pDii~~~~~~~~~~ 69 (377)
+||+|+++|......... +++++++...+........+.. .....+... .+..+||+||+|.....++
T Consensus 23 ~G~~v~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~ 101 (396)
T cd03818 23 QGHEVVFLTEPNAAPPPG-GVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETL 101 (396)
T ss_pred CCCEEEEEecCCCCCCCC-CeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhh
Confidence 599999999887633222 5776666544332111111111 111122222 2345899999997533222
Q ss_pred HHHHHHHhhCCCEEEEeccCCcc------cccccccccc--hhh--HHHHHHHHHhcCCeeEecChhHHHHHHHhcccCC
Q 017114 70 GALIIAKLLCVPIVMSYHTHVPV------YIPRYTFSWL--VKP--MWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAA 139 (377)
Q Consensus 70 ~~~~~~~~~~~~~i~~~h~~~~~------~~~~~~~~~~--~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~ 139 (377)
.+.....++|+|...|-.... ..+....... .+. ........++.+|.++++|+..++.+.+.+ .
T Consensus 102 --~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~---~ 176 (396)
T cd03818 102 --FLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALILLALAQADAGVSPTRWQRSTFPAEL---R 176 (396)
T ss_pred --hHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHhh---c
Confidence 222233578988766532211 1111111110 111 111245678999999999999999887654 3
Q ss_pred CcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeec-ccccccHHHHHHHHHhC----CCceEEEEecCc---
Q 017114 140 NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-LGVEKSLDFLKRVMDRL----PEARIAFIGDGP--- 211 (377)
Q Consensus 140 ~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~-~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~--- 211 (377)
+++.+||||+|.+.|.+...............++.++++|+|| +.+.||++.+++|+..+ ++++++|+|++.
T Consensus 177 ~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~ 256 (396)
T cd03818 177 SRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSY 256 (396)
T ss_pred cceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCccc
Confidence 6899999999999887653221111111111246678999997 99999999999999765 789999999632
Q ss_pred ---------cHHHH-HHhhc---CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCC
Q 017114 212 ---------YREEL-EKMFT---GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP 278 (377)
Q Consensus 212 ---------~~~~l-~~~~~---~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~ 278 (377)
..+.+ +++.. ..+|.|.|+++++++..+|+.||++++||..|++|++++||||||+|||+++.++..
T Consensus 257 g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~ 336 (396)
T cd03818 257 GAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVR 336 (396)
T ss_pred CCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCch
Confidence 12222 33322 347999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-hcCHHHHHHHHH
Q 017114 279 DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIR 339 (377)
Q Consensus 279 ~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~ 339 (377)
|++ .++.+|++++++|+++++++|.++++|++.+.++++++++.++ +|+|+.++++++
T Consensus 337 e~i---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 337 EVI---TDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred hhc---ccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 999 8889999999999999999999999999999999999999995 599999999875
No 13
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.6e-39 Score=306.08 Aligned_cols=289 Identities=17% Similarity=0.226 Sum_probs=225.8
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCccccc-----cc-----cc-ccchhhHHHHHHHHHhcCCeeEec
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIP-----RY-----TF-SWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-----~~-----~~-~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
.||+||+|.+. .+.++..+++..++|+|.+.|........ .. .. ..........+...+..||.||+.
T Consensus 310 ~pDvIHaHyw~-sG~aa~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIas 388 (1050)
T TIGR02468 310 WPYVIHGHYAD-AGDSAALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITS 388 (1050)
T ss_pred CCCEEEECcch-HHHHHHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEe
Confidence 49999999754 45667778899999999999985322211 00 00 001112224678899999999999
Q ss_pred ChhHHHHHHHhcc-c---------------------CCCcEEEecCCCCCCCCCCccCchH-------------------
Q 017114 124 SVAIGKDLEAARV-T---------------------AANKIRIWKKGVDSESFHPRFRSSE------------------- 162 (377)
Q Consensus 124 s~~~~~~~~~~~~-~---------------------~~~~i~~i~~gv~~~~~~~~~~~~~------------------- 162 (377)
|....+.....|. . ...++.|||||+|.+.|.|......
T Consensus 389 T~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1050)
T TIGR02468 389 TRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWS 468 (1050)
T ss_pred CHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhH
Confidence 9999887655542 1 1248999999999999987532110
Q ss_pred HHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC------CceEEEEecCccH-----------HHHHHhhcC---
Q 017114 163 MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP------EARIAFIGDGPYR-----------EELEKMFTG--- 222 (377)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~------~~~l~i~G~g~~~-----------~~l~~~~~~--- 222 (377)
...++ +..+++++|+++||+.+.||++.+++|+..++ ++. +|+|+++.. ..+.+++.+
T Consensus 469 ~l~r~-~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL 546 (1050)
T TIGR02468 469 EIMRF-FTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL 546 (1050)
T ss_pred HHHhh-cccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCC
Confidence 00111 13457789999999999999999999998773 343 467866432 234444443
Q ss_pred -CCEEEccccCchhHHHHHhcC----CEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCC
Q 017114 223 -MPAVFTGMLLGEELSQAYASG----DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGD 297 (377)
Q Consensus 223 -~~v~~~g~~~~~~~~~~~~~a----di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~ 297 (377)
.+|.|.|+++++++..+|+.| |++|+||.+|+||++++||||||+|||+|+.++..+++ .++.+|+++++.|
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII---~~g~nGlLVdP~D 623 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIH---RVLDNGLLVDPHD 623 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHh---ccCCcEEEECCCC
Confidence 359999999999999999988 69999999999999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 017114 298 LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFW 350 (377)
Q Consensus 298 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~~ 350 (377)
+++|+++|.++++|++.++++++++++.+++|+|+.++++++ ..+..+..+.
T Consensus 624 ~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl-~~i~~~~~~~ 675 (1050)
T TIGR02468 624 QQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYL-SRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHhccC
Confidence 999999999999999999999999999998999999999999 5777765433
No 14
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=2.5e-39 Score=291.98 Aligned_cols=334 Identities=29% Similarity=0.410 Sum_probs=252.7
Q ss_pred CCcEEEEEeeCCCCCc-----cccCceeecccCCCCCcccc---ccccccchHHHHHHHHhc--CCCEEEeCCCchhHHH
Q 017114 1 MGDEVMVVTTHEGVPQ-----EFYGAKLIGSRSFPCPWYQK---VPLSLALSPRIISEVARF--KPDIIHASSPGIMVFG 70 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~--~pDii~~~~~~~~~~~ 70 (377)
+||+|+|+|....... ...++.+.++...+...... ......+...+.+.+++. +||+||++.+. ..+.
T Consensus 37 ~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~-~~~~ 115 (398)
T cd03800 37 LGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRREGGRPDLIHAHYWD-SGLV 115 (398)
T ss_pred cCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhcCCCccEEEEecCc-cchH
Confidence 5999999997543221 23344554443322211111 111123445677777777 99999999753 3344
Q ss_pred HHHHHHhhCCCEEEEeccCCccccccccccc--chhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCC
Q 017114 71 ALIIAKLLCVPIVMSYHTHVPVYIPRYTFSW--LVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 148 (377)
Q Consensus 71 ~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g 148 (377)
+..+++..++|+|.+.|+............+ ........++..++.+|.++++|+...+.+.+.+..+..++.++|||
T Consensus 116 ~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng 195 (398)
T cd03800 116 ALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPG 195 (398)
T ss_pred HHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCC
Confidence 5667788899999999986543222111111 11222346678899999999999999999988876556679999999
Q ss_pred CCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccH------HHHHH
Q 017114 149 VDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYR------EELEK 218 (377)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~------~~l~~ 218 (377)
+|.+.+.+.......+.... ...++++++|+|++.+.||++.+++++..+ ++++++++|++... ..+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~ 274 (398)
T cd03800 196 VDLERFTPYGRAEARRARLL-RDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRE 274 (398)
T ss_pred CCccceecccchhhHHHhhc-cCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHH
Confidence 99887766543322122222 235678999999999999999999999887 37999999976532 22233
Q ss_pred hhc----CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeC
Q 017114 219 MFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN 294 (377)
Q Consensus 219 ~~~----~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~ 294 (377)
+.+ ..++.+.|+++.+++..+|+.||++++||..|++|++++|||++|+|||+++.++..+++ +++.+|++++
T Consensus 275 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i---~~~~~g~~~~ 351 (398)
T cd03800 275 LARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIV---VDGVTGLLVD 351 (398)
T ss_pred HHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHc---cCCCCeEEeC
Confidence 332 347999999999999999999999999999999999999999999999999999999999 8888999999
Q ss_pred CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 017114 295 PGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 339 (377)
Q Consensus 295 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 339 (377)
++|+++++++|.+++++++.++++++++++.+ ++|||+.+++++.
T Consensus 352 ~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 352 PRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 99999999999999999999999999999998 6899999999875
No 15
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=3.5e-39 Score=289.74 Aligned_cols=330 Identities=18% Similarity=0.212 Sum_probs=237.2
Q ss_pred CCcEEEEEeeCCCCCc----cccCceeecccCCCCCcccccccccc----c---hHHH-HHHHHhcCCCEEEeCCCchh-
Q 017114 1 MGDEVMVVTTHEGVPQ----EFYGAKLIGSRSFPCPWYQKVPLSLA----L---SPRI-ISEVARFKPDIIHASSPGIM- 67 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~-~~~i~~~~pDii~~~~~~~~- 67 (377)
+||+|+|++....... ...++.++.+...+ .........+. . ...+ ...++..+||+||++.+...
T Consensus 30 ~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~ 108 (415)
T cd03816 30 HGWKVDLVGYLETPPHDEILSNPNITIHPLPPPP-QRLNKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIP 108 (415)
T ss_pred cCceEEEEEecCCCCCHHHhcCCCEEEEECCCCc-cccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCch
Confidence 5999999998754322 23445554443322 00111111111 1 1122 22455678999999875433
Q ss_pred -HHHHHHHHHhhCCCEEEEeccCCcccccc--cccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEE
Q 017114 68 -VFGALIIAKLLCVPIVMSYHTHVPVYIPR--YTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRI 144 (377)
Q Consensus 68 -~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~ 144 (377)
...+.++++..++|+|++.|+.+...... .......+...++++++++.+|.++++|+.+++.+.+ ++.+.+++.+
T Consensus 109 ~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~v 187 (415)
T cd03816 109 TLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDLQQ-FNNWKIRATV 187 (415)
T ss_pred HHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHHHh-hhccCCCeee
Confidence 23355567778999999999865321111 1122233466778899999999999999999999987 4457899999
Q ss_pred ecCCCCCCCCCCccCchHHHHH----------------hhCCCCCCCeEEEeecccccccHHHHHHHHHhC---------
Q 017114 145 WKKGVDSESFHPRFRSSEMRWR----------------LSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--------- 199 (377)
Q Consensus 145 i~~gv~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--------- 199 (377)
||||. ...|.+.......... .....++..+++++|++.+.||++.+++|++.+
T Consensus 188 I~Ng~-~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~ 266 (415)
T cd03816 188 LYDRP-PEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPK 266 (415)
T ss_pred cCCCC-HHHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhccccc
Confidence 99995 4455544322111110 011223456788899999999999999999875
Q ss_pred -CCceEEEEecCccHHHHHHhhcCC---CEEE-ccccCchhHHHHHhcCCEEEeccC---CcccchHHHHHHhcCCCeEE
Q 017114 200 -PEARIAFIGDGPYREELEKMFTGM---PAVF-TGMLLGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 200 -~~~~l~i~G~g~~~~~l~~~~~~~---~v~~-~g~~~~~~~~~~~~~adi~v~ps~---~e~~~~~~~Ea~a~G~PvI~ 271 (377)
|+++|+|+|+|+..+.+++++++. ++.+ .|+++.+++..+|+.||++++++. .+++|++++||||||+|||+
T Consensus 267 ~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~ 346 (415)
T cd03816 267 LPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA 346 (415)
T ss_pred CCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEE
Confidence 469999999999988888887654 4554 578999999999999999987532 47899999999999999999
Q ss_pred ecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 272 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN---QELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
++.++..|++ +++.+|++++ |+++++++|.++++| ++.+++|++++++.. +++|++...+.+
T Consensus 347 s~~~~~~eiv---~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~-~~~~~~~~~~~~ 411 (415)
T cd03816 347 LDFKCIDELV---KHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES-ELRWDENWDRVV 411 (415)
T ss_pred eCCCCHHHHh---cCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-hcCHHHHHHHHh
Confidence 9999999999 8899999995 899999999999999 899999999998876 556665555443
No 16
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=6.6e-39 Score=288.08 Aligned_cols=287 Identities=25% Similarity=0.415 Sum_probs=229.7
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccc-cccccchhhHHHHHHHHHhcCCeeEecChhHHHHHH
Q 017114 54 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPR-YTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 132 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 132 (377)
.+||+||+|++.. .+.+.++++..++|++++.|+..+..... ...........++++..++.+|.++++|+.+++.+.
T Consensus 82 ~~~divh~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~ 160 (388)
T TIGR02149 82 VDADVVHSHTWYT-FLAGHLAKKLYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGGMREDIL 160 (388)
T ss_pred CCCCeEeecchhh-hhHHHHHHHhcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHHHHHHHH
Confidence 4799999998543 34445566778999999999976532110 000111223456778899999999999999999988
Q ss_pred Hhc-ccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC-CCceEEEEecC
Q 017114 133 AAR-VTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDG 210 (377)
Q Consensus 133 ~~~-~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l-~~~~l~i~G~g 210 (377)
+.+ +.+..++.++|||+|.+.+.+. .....+.++.. +++.++++|+|++.+.||++.+++|++.+ ++++++++|+|
T Consensus 161 ~~~~~~~~~~i~vi~ng~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~l~i~g~g 238 (388)
T TIGR02149 161 KYYPDLDPEKVHVIYNGIDTKEYKPD-DGNVVLDRYGI-DRSRPYILFVGRITRQKGVPHLLDAVHYIPKDVQVVLCAGA 238 (388)
T ss_pred HHcCCCCcceEEEecCCCChhhcCCC-chHHHHHHhCC-CCCceEEEEEcccccccCHHHHHHHHHHHhhcCcEEEEeCC
Confidence 876 3456789999999999887654 22333444433 34667899999999999999999999988 57899999876
Q ss_pred ccH----HHHHHhhcC-----CCEEE-ccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcc
Q 017114 211 PYR----EELEKMFTG-----MPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 280 (377)
Q Consensus 211 ~~~----~~l~~~~~~-----~~v~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~ 280 (377)
+.. +.+++...+ .++.+ .|.++.+++..+|+.||++|+||..|++|++++|||+||+|||+++.++..|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~ 318 (388)
T TIGR02149 239 PDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEV 318 (388)
T ss_pred CCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHH
Confidence 543 334443322 23665 46799999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeeEEeCCCCH------HHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Q 017114 281 IPEDQDGKIGYLFNPGDL------DDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAI 347 (377)
Q Consensus 281 ~~~~~~~~~g~~~~~~~~------~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~ 347 (377)
+ +++.+|++++++|+ ++++++|.++++|++.++++++++++.+ ++|+|+.+++++. .+|++++
T Consensus 319 i---~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~-~~y~~~~ 388 (388)
T TIGR02149 319 V---VDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTV-EMYRKVL 388 (388)
T ss_pred h---hCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhhC
Confidence 9 88889999999888 9999999999999999999999999987 5899999999999 6998763
No 17
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=1.8e-38 Score=282.07 Aligned_cols=314 Identities=22% Similarity=0.314 Sum_probs=236.0
Q ss_pred cEEEEEeeCCCC-Cc---cccCceeecccCCCCCcc--cc--ccccccchHHHHHHHHh---cCCCEEEeCCCchhHHHH
Q 017114 3 DEVMVVTTHEGV-PQ---EFYGAKLIGSRSFPCPWY--QK--VPLSLALSPRIISEVAR---FKPDIIHASSPGIMVFGA 71 (377)
Q Consensus 3 ~~V~v~~~~~~~-~~---~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~i~~---~~pDii~~~~~~~~~~~~ 71 (377)
++||++|..... ++ ...++.+.+++....... .+ ....+.+...+...+.. .++|+||+|+... +..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~--~~~ 113 (380)
T PRK15484 36 IPNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQRILNIAHKFTITKDSVIVIHNSMK--LYR 113 (380)
T ss_pred CCeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccCchhHHHHHHHHHHhcCCCCCcEEEEeCcHH--hHH
Confidence 589999987643 32 223455555533222111 11 01223444455555544 5699999998432 223
Q ss_pred HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCC
Q 017114 72 LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS 151 (377)
Q Consensus 72 ~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~ 151 (377)
.+..+..+.|+++++|+.+. ...+..++.++++|+..++.+.+.+ +..++.++|||+|.
T Consensus 114 ~~~~~~~~~~~v~~~h~~~~-------------------~~~~~~~~~ii~~S~~~~~~~~~~~--~~~~i~vIpngvd~ 172 (380)
T PRK15484 114 QIRERAPQAKLVMHMHNAFE-------------------PELLDKNAKIIVPSQFLKKFYEERL--PNADISIVPNGFCL 172 (380)
T ss_pred HHHhhCCCCCEEEEEecccC-------------------hhHhccCCEEEEcCHHHHHHHHhhC--CCCCEEEecCCCCH
Confidence 33455567899999997532 1233568999999999999988764 45689999999998
Q ss_pred CCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCcc---------HHHHHH
Q 017114 152 ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPY---------REELEK 218 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~---------~~~l~~ 218 (377)
+.+.+.. ....+..+.. ..+..+++|+|++.+.||++.+++|++.+ |+++|+|+|+|+. .+.+++
T Consensus 173 ~~~~~~~-~~~~~~~~~~-~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~ 250 (380)
T PRK15484 173 ETYQSNP-QPNLRQQLNI-SPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLE 250 (380)
T ss_pred HHcCCcc-hHHHHHHhCC-CCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHH
Confidence 8776542 2223333332 34568899999999999999999999876 7899999997652 224444
Q ss_pred hhc--CCCEEEccccCchhHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeE-EeC
Q 017114 219 MFT--GMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY-LFN 294 (377)
Q Consensus 219 ~~~--~~~v~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~-~~~ 294 (377)
++. ..++.+.|+++.+++..+|+.||++++||. .|+||++++||||||+|||+++.++.+|++ .++.+|+ +++
T Consensus 251 ~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv---~~~~~G~~l~~ 327 (380)
T PRK15484 251 AAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFV---LEGITGYHLAE 327 (380)
T ss_pred HHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhc---ccCCceEEEeC
Confidence 433 247999999999999999999999999997 599999999999999999999999999999 8889998 567
Q ss_pred CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHH
Q 017114 295 PGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 295 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~ 346 (377)
+.|+++++++|.++++|++. .++++++++.+ ++|+|+.+++++. .+|++.
T Consensus 328 ~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fsw~~~a~~~~-~~l~~~ 378 (380)
T PRK15484 328 PMTSDSIISDINRTLADPEL-TQIAEQAKDFVFSKYSWEGVTQRFE-EQIHNW 378 (380)
T ss_pred CCCHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHh
Confidence 88999999999999999985 78999999887 6899999999999 577764
No 18
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1e-38 Score=283.63 Aligned_cols=313 Identities=28% Similarity=0.399 Sum_probs=245.7
Q ss_pred CCcEEEEEeeCCCCCcccc-CceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhC
Q 017114 1 MGDEVMVVTTHEGVPQEFY-GAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC 79 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~ 79 (377)
+||+|+|++.......... ....... ......+....+.....+.+.+++.+||+||+|..........+.++..+
T Consensus 27 ~g~~v~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~ 103 (355)
T cd03799 27 AGHEVEIFSLRPPEDTLVHPEDRAELA---RTRYLARSLALLAQALVLARELRRLGIDHIHAHFGTTPATVAMLASRLGG 103 (355)
T ss_pred CCCeEEEEEecCccccccccccccccc---chHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHHhcC
Confidence 5999999998765322111 0000000 00001111122333455667778899999999986544455555666678
Q ss_pred CCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccC
Q 017114 80 VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR 159 (377)
Q Consensus 80 ~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~ 159 (377)
+|+++++|+......... ..++..++.+|.+++.|+..++.+.+.++.+..++.++|||+|.+.+.+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~ 173 (355)
T cd03799 104 IPYSFTAHGKDIFRSPDA----------IDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPP 173 (355)
T ss_pred CCEEEEEecccccccCch----------HHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccc
Confidence 999999997532211110 4567788999999999999999999985556789999999999887765420
Q ss_pred chHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhcC----CCEEEcccc
Q 017114 160 SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG----MPAVFTGML 231 (377)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~ 231 (377)
....+++.++|+|++.+.||++.++++++.+ ++++++++|.++..+.+++.+.+ .+|.+.|++
T Consensus 174 ---------~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~ 244 (355)
T cd03799 174 ---------PPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAK 244 (355)
T ss_pred ---------cccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcC
Confidence 0234678899999999999999999999876 47999999999888877776553 369999999
Q ss_pred CchhHHHHHhcCCEEEeccCC------cccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHH
Q 017114 232 LGEELSQAYASGDVFVMPSES------ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 305 (377)
Q Consensus 232 ~~~~~~~~~~~adi~v~ps~~------e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i 305 (377)
+.+++..+|++||++++||.. |++|++++|||++|+|||+++.++.++++ +++.+|++++++|+++++++|
T Consensus 245 ~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i---~~~~~g~~~~~~~~~~l~~~i 321 (355)
T cd03799 245 SQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELV---EDGETGLLVPPGDPEALADAI 321 (355)
T ss_pred ChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhh---hCCCceEEeCCCCHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999999999 788899999999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHH
Q 017114 306 EPLLYNQELRETMGQAARQEM-EKYDWRAATRTI 338 (377)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~ 338 (377)
.+++++++.+.++++++++.+ ++|+|+..++++
T Consensus 322 ~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l 355 (355)
T cd03799 322 ERLLDDPELRREMGEAGRARVEEEFDIRKQAARL 355 (355)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 999999999999999999998 579999998753
No 19
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.8e-39 Score=296.38 Aligned_cols=275 Identities=27% Similarity=0.344 Sum_probs=226.6
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccc-----cc-----cccccchhhHHHHHHHHHhcCCeeEec
Q 017114 54 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI-----PR-----YTFSWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
.++|+||+|+....++.+.++++..|+|+|++.|+.++... .. .......+.+..+.+..++.||.+++.
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii~~ 251 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITTL 251 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEEec
Confidence 37899999987666677777888999999999999754311 00 011112233455678889999999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----
Q 017114 124 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---- 199 (377)
Q Consensus 124 s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l---- 199 (377)
|+...+...+.+ .+.+++.+||||+|.+.+.+.... ....+.++|+++|++.+.||++.+++|++.+
T Consensus 252 s~~~~~~~~~~g-~~~~ki~vIpNgid~~~f~~~~~~--------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~ 322 (475)
T cd03813 252 YEGNRERQIEDG-ADPEKIRVIPNGIDPERFAPARRA--------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKI 322 (475)
T ss_pred CHHHHHHHHHcC-CCHHHeEEeCCCcCHHHcCCcccc--------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhC
Confidence 999988776654 467899999999999887664321 0234678999999999999999999999765
Q ss_pred CCceEEEEecCc----cHHHHHHhhc----CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 200 PEARIAFIGDGP----YREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 200 ~~~~l~i~G~g~----~~~~l~~~~~----~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
|+++++|+|.++ +.++++++++ ..+|.|.| .+++.++|+.+|++++||..|++|++++||||||+|||+
T Consensus 323 p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVa 399 (475)
T cd03813 323 PDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVA 399 (475)
T ss_pred CCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEE
Confidence 789999999874 3445555554 34799999 479999999999999999999999999999999999999
Q ss_pred ecCCCCCccccccCC------CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Q 017114 272 VRAGGIPDIIPEDQD------GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYN 344 (377)
Q Consensus 272 ~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~ly~ 344 (377)
|+.++..+++ .+ +.+|+++++.|+++++++|.++++|++.++++++++++.++ .|+|+.+++++. .+|+
T Consensus 400 td~g~~~elv---~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~-~lY~ 475 (475)
T cd03813 400 TDVGSCRELI---EGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYR-RLYL 475 (475)
T ss_pred CCCCChHHHh---cCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 9999999999 55 56899999999999999999999999999999999999885 699999999999 5884
No 20
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.1e-38 Score=292.02 Aligned_cols=294 Identities=21% Similarity=0.295 Sum_probs=225.2
Q ss_pred HHHHHHHh--cCCCEEEeCCCchhHHHHHHHHHhhC---CCEEEEeccCCccc-ccccc-----cc--cch-h-----hH
Q 017114 46 RIISEVAR--FKPDIIHASSPGIMVFGALIIAKLLC---VPIVMSYHTHVPVY-IPRYT-----FS--WLV-K-----PM 106 (377)
Q Consensus 46 ~~~~~i~~--~~pDii~~~~~~~~~~~~~~~~~~~~---~~~i~~~h~~~~~~-~~~~~-----~~--~~~-~-----~~ 106 (377)
.+.+.+++ .+|||||+|++... +.+..+++..+ +|+|+++|+..... .+... .. ... . ..
T Consensus 117 a~~~~~~~~~~~~DiiH~hdw~~~-~~~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
T TIGR02095 117 AAAELLSGLGWQPDVVHAHDWHTA-LVPALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGR 195 (473)
T ss_pred HHHHHHHhcCCCCCEEEECCcHHH-HHHHHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCc
Confidence 34455543 68999999996544 33344545444 99999999865321 11000 00 000 0 01
Q ss_pred HHHHHHHHhcCCeeEecChhHHHHHHHh-cc--------cCCCcEEEecCCCCCCCCCCccCc-----------------
Q 017114 107 WLVIKFLHRAADLTLVPSVAIGKDLEAA-RV--------TAANKIRIWKKGVDSESFHPRFRS----------------- 160 (377)
Q Consensus 107 ~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~--------~~~~~i~~i~~gv~~~~~~~~~~~----------------- 160 (377)
..+.+..++.||.++++|+.+++.+... ++ .+..++.+|+||+|.+.|.|....
T Consensus 196 ~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~ 275 (473)
T TIGR02095 196 VNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAEN 275 (473)
T ss_pred hHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhh
Confidence 2346778899999999999998887653 11 135689999999999988764321
Q ss_pred -hHHHHHhhCCC-CCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCc--cHHHHHHhhcCC--CEEEccccC
Q 017114 161 -SEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVFTGMLL 232 (377)
Q Consensus 161 -~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~--~~~~l~~~~~~~--~v~~~g~~~ 232 (377)
...++++.... ++.++|+|+||+.+.||++.+++|+..+ .+++++|+|+|+ ..+.++++..+. ++.+.+..+
T Consensus 276 k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~ 355 (473)
T TIGR02095 276 KEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYD 355 (473)
T ss_pred HHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 22333443322 3678999999999999999999999887 469999999884 456666665433 588888888
Q ss_pred chhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC------CeeEEeCCCCHHHHHHHHH
Q 017114 233 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG------KIGYLFNPGDLDDCLSKLE 306 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~l~~~i~ 306 (377)
.+++..+|+.||++++||.+|++|++++|||+||+|||+++.++..+.+ .++ .+|+++++.|+++++++|.
T Consensus 356 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v---~~~~~~~~~~~G~l~~~~d~~~la~~i~ 432 (473)
T TIGR02095 356 EALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTV---VDGDPEAESGTGFLFEEYDPGALLAALS 432 (473)
T ss_pred HHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceE---ecCCCCCCCCceEEeCCCCHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999 666 8999999999999999999
Q ss_pred HHhh----CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017114 307 PLLY----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 307 ~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~ 346 (377)
+++. +++.++++++++.+ ++|||+.+++++. .+|+++
T Consensus 433 ~~l~~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~~Y~~l 473 (473)
T TIGR02095 433 RALRLYRQDPSLWEALQKNAMS--QDFSWDKSAKQYV-ELYRSL 473 (473)
T ss_pred HHHHHHhcCHHHHHHHHHHHhc--cCCCcHHHHHHHH-HHHHhC
Confidence 9888 88888888887743 5799999999999 699863
No 21
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.2e-38 Score=295.23 Aligned_cols=293 Identities=18% Similarity=0.199 Sum_probs=223.8
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEE-EeccCCcccccccccccchhhHHHHHHHH-HhcCC
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM-SYHTHVPVYIPRYTFSWLVKPMWLVIKFL-HRAAD 118 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d 118 (377)
.....++.+++++.+|||||+|......+ +.++++..++|+|+ +.|+..+..... ........+.+.+ ...++
T Consensus 386 ~~~~~~L~~~lk~~kpDIVH~h~~~a~~l-g~lAa~~~gvPvIv~t~h~~~~~~~~~----~~~~~~~~l~~~l~~~~~~ 460 (694)
T PRK15179 386 IEGTTKLTDVMRSSVPSVVHIWQDGSIFA-CALAALLAGVPRIVLSVRTMPPVDRPD----RYRVEYDIIYSELLKMRGV 460 (694)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCcHHHH-HHHHHHHcCCCEEEEEeCCCccccchh----HHHHHHHHHHHHHHhcCCe
Confidence 34457889999999999999998655433 34567778999877 445543221111 1111111122222 22345
Q ss_pred eeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhC-CCCCCCeEEEeecccccccHHHHHHHHH
Q 017114 119 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMD 197 (377)
Q Consensus 119 ~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~a~~ 197 (377)
.+++.|+..++.+.+.++.+.+++.+||||+|...|.+.......+..+.. ...+.++|+++|++.+.||++.+++|+.
T Consensus 461 i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a 540 (694)
T PRK15179 461 ALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQ 540 (694)
T ss_pred EEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHH
Confidence 667777777777877666677899999999998877643222211111111 1234678999999999999999999997
Q ss_pred hC----CCceEEEEecCccHHHHHHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 198 RL----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 198 ~l----~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
.+ ++++|+|+|+|+..+.+++++++ .+|.|.|+. +++..+|+.+|++|+||.+|+||++++|||+||+||
T Consensus 541 ~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PV 618 (694)
T PRK15179 541 RFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPV 618 (694)
T ss_pred HHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeE
Confidence 54 78999999999988888887764 369999997 689999999999999999999999999999999999
Q ss_pred EEecCCCCCccccccCCCCeeEEeCCCCH--HHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 017114 270 VGVRAGGIPDIIPEDQDGKIGYLFNPGDL--DDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 270 I~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~ 344 (377)
|+|+.++.+|++ .++.+|++++++|. +++++++.+++.+......+++++++.+ ++|||+.+++++. .+|+
T Consensus 619 Vat~~gG~~EiV---~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~-~lY~ 692 (694)
T PRK15179 619 VTTLAGGAGEAV---QEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTV-RCYQ 692 (694)
T ss_pred EEECCCChHHHc---cCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 999999999999 88999999997764 6899999888877666667888999888 5899999999999 6885
No 22
>PLN02316 synthase/transferase
Probab=100.00 E-value=4.9e-38 Score=297.03 Aligned_cols=282 Identities=20% Similarity=0.248 Sum_probs=219.0
Q ss_pred HHHHHHh--cCCCEEEeCCCchhHHHHHHHHHh------hCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCC
Q 017114 47 IISEVAR--FKPDIIHASSPGIMVFGALIIAKL------LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 118 (377)
Q Consensus 47 ~~~~i~~--~~pDii~~~~~~~~~~~~~~~~~~------~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 118 (377)
+...++. .+|||||+|++... +.+.+++.. .++|+|+++|+.... . ...+..+..+|
T Consensus 699 ale~l~~~~~~PDIIHaHDW~ta-lva~llk~~~~~~~~~~~p~V~TiHnl~~~------~--------n~lk~~l~~AD 763 (1036)
T PLN02316 699 ALEFLLQSGFHPDIIHCHDWSSA-PVAWLFKDHYAHYGLSKARVVFTIHNLEFG------A--------NHIGKAMAYAD 763 (1036)
T ss_pred HHHHHHhcCCCCCEEEECCChHH-HHHHHHHHhhhhhccCCCCEEEEeCCcccc------h--------hHHHHHHHHCC
Confidence 3444443 58999999997554 333334332 458999999985311 0 12345778999
Q ss_pred eeEecChhHHHHHHHhccc--CCCcEEEecCCCCCCCCCCccC-------------------chHHHHHhhCCCCCCCeE
Q 017114 119 LTLVPSVAIGKDLEAARVT--AANKIRIWKKGVDSESFHPRFR-------------------SSEMRWRLSNGEPDKPLI 177 (377)
Q Consensus 119 ~ii~~s~~~~~~~~~~~~~--~~~~i~~i~~gv~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~i 177 (377)
.|+++|+.+++.+...+.. ...++.+|+||+|.+.|.|... ....+.++.+...+.+++
T Consensus 764 ~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plV 843 (1036)
T PLN02316 764 KATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLV 843 (1036)
T ss_pred EEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEE
Confidence 9999999999998876543 2478999999999988766422 112344444433467899
Q ss_pred EEeecccccccHHHHHHHHHhC--CCceEEEEecCcc---HHHHHHhhcC------CCEEEccccCchhHHHHHhcCCEE
Q 017114 178 VHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPY---REELEKMFTG------MPAVFTGMLLGEELSQAYASGDVF 246 (377)
Q Consensus 178 ~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~~---~~~l~~~~~~------~~v~~~g~~~~~~~~~~~~~adi~ 246 (377)
+++||+.++||++.+++|+..+ ++++|+|+|+|+. .+.+++++.. .+|.|.+..+......+|+.||++
T Consensus 844 g~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADif 923 (1036)
T PLN02316 844 GIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFI 923 (1036)
T ss_pred EEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEE
Confidence 9999999999999999999876 5799999999864 3455555552 358888776443345899999999
Q ss_pred EeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC-------------CeeEEeCCCCHHHHHHHHHHHhhC-H
Q 017114 247 VMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG-------------KIGYLFNPGDLDDCLSKLEPLLYN-Q 312 (377)
Q Consensus 247 v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~-------------~~g~~~~~~~~~~l~~~i~~~~~~-~ 312 (377)
|+||.+|+||++.+|||+||+|+|+++.||+++.+ .++ .+|+++++.|+++++.+|.+++.+ +
T Consensus 924 lmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV---~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~ 1000 (1036)
T PLN02316 924 LVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTV---FDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWY 1000 (1036)
T ss_pred EeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhc---cccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999998 552 589999999999999999999986 3
Q ss_pred HHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Q 017114 313 ELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAI 347 (377)
Q Consensus 313 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~ 347 (377)
+....+++.+++.+ +.|||+..+++++ .+|+.+.
T Consensus 1001 ~~~~~~~~~~r~~m~~dFSW~~~A~~Y~-~LY~~a~ 1035 (1036)
T PLN02316 1001 DGRDWFNSLCKRVMEQDWSWNRPALDYM-ELYHSAR 1035 (1036)
T ss_pred hhHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHh
Confidence 55566788888877 5799999999999 7998874
No 23
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=9.7e-38 Score=278.20 Aligned_cols=321 Identities=21% Similarity=0.214 Sum_probs=230.9
Q ss_pred CCcEEEEEeeCCCCCc---cccCceeecccCCCCCccccccccccchHHHHHHH-HhcCCCEEEeCCCchhHHHHHHHHH
Q 017114 1 MGDEVMVVTTHEGVPQ---EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEV-ARFKPDIIHASSPGIMVFGALIIAK 76 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~pDii~~~~~~~~~~~~~~~~~ 76 (377)
+||+|+|+|....... ...++++..++...........+. ...+.+.+ ++.++|+||...+.. ......++
T Consensus 31 ~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~ 105 (363)
T cd04955 31 RGHEVTVYCRSPYPKQKETEYNGVRLIHIPAPEIGGLGTIIYD---ILAILHALFVKRDIDHVHALGPAI--APFLPLLR 105 (363)
T ss_pred cCCCEEEEEccCCCCCcccccCCceEEEcCCCCccchhhhHHH---HHHHHHHHhccCCeEEEEecCccH--HHHHHHHH
Confidence 5999999998764322 344555544433221111111111 12222222 234555555554433 22333445
Q ss_pred hhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCC
Q 017114 77 LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHP 156 (377)
Q Consensus 77 ~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~ 156 (377)
..+.|++++.|+..... ...........+..++..++.+|.++++|+..++.+.+.++.+ . .++|||+|...+.+
T Consensus 106 ~~~~~~v~~~h~~~~~~--~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~--~-~~i~ngv~~~~~~~ 180 (363)
T cd04955 106 LKGKKVVVNMDGLEWKR--AKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLKEKYGRD--S-TYIPYGADHVVSSE 180 (363)
T ss_pred hcCCCEEEEccCcceee--cccccchhHHHHHHHHHHHhhccEEEeCCHHHHHHHHHhcCCC--C-eeeCCCcChhhcch
Confidence 56899999999853221 1111222344556678889999999999999999997766532 2 89999999876654
Q ss_pred ccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC-CceEEEEecCccHHHHHHhh-----cCCCEEEccc
Q 017114 157 RFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMF-----TGMPAVFTGM 230 (377)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~-~~~l~i~G~g~~~~~l~~~~-----~~~~v~~~g~ 230 (377)
........ ...++..++++|++.+.||++.+++|++.+. +++++++|+++....+.+.+ ...+|.+.|+
T Consensus 181 ---~~~~~~~~--~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~ 255 (363)
T cd04955 181 ---EDEILKKY--GLEPGRYYLLVGRIVPENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGP 255 (363)
T ss_pred ---hhhhHHhc--CCCCCcEEEEEecccccCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccc
Confidence 11122222 2234457889999999999999999999885 69999999875443333322 2347999999
Q ss_pred cCchhHHHHHhcCCEEEeccCC-cccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 231 LLGEELSQAYASGDVFVMPSES-ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~~-e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
++++++..++.+||++++||.. |++|++++|||+||+|||+++.++..|++ ++ +|.++++.|. +++++.+++
T Consensus 256 ~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~---~~--~g~~~~~~~~--l~~~i~~l~ 328 (363)
T cd04955 256 IYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVL---GD--KAIYFKVGDD--LASLLEELE 328 (363)
T ss_pred cChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccceee---cC--CeeEecCchH--HHHHHHHHH
Confidence 9999999999999999999998 99999999999999999999999999998 44 7888876665 999999999
Q ss_pred hCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Q 017114 310 YNQELRETMGQAARQEME-KYDWRAATRTIRNEQYN 344 (377)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~ly~ 344 (377)
++++.+.++++++++.++ +|||+.++++++ .+|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~ 363 (363)
T cd04955 329 ADPEEVSAMAKAARERIREKYTWEKIADQYE-ELYK 363 (363)
T ss_pred hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 999999999999999885 699999999999 5774
No 24
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.9e-38 Score=278.93 Aligned_cols=271 Identities=30% Similarity=0.405 Sum_probs=222.0
Q ss_pred HHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHH
Q 017114 51 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 130 (377)
Q Consensus 51 i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 130 (377)
++..+||+||++.+........ .....++|+++++|+..... .........+.+.+++.+|.+++.|+...+.
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~~-~~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~ 151 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLAL-LLLPRKKPVVVHWHSDIVKQ------KLLLKLYRPLQRRFLRRADAIVATSPNYAET 151 (357)
T ss_pred hcCCCCCEEEEecCcchHHHHH-HHhccCceEEEEEcChhhcc------chhhhhhhHHHHHHHHhcCEEEeCcHHHHHH
Confidence 5678999999998654433322 22236889999999743211 1233444567788999999999999999998
Q ss_pred HHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecC
Q 017114 131 LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDG 210 (377)
Q Consensus 131 ~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g 210 (377)
+...+.. ..++.++|||+|...+.+...... .......+.++++|+|++.+.||++.++++++.+.+++++++|+|
T Consensus 152 ~~~~~~~-~~~~~~i~~gi~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~l~i~G~g 227 (357)
T cd03795 152 SPVLRRF-RDKVRVIPLGLDPARYPRPDALEE---AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALPDAPLVIVGEG 227 (357)
T ss_pred HHHhcCC-ccceEEecCCCChhhcCCcchhhh---HhhcCCCCCcEEEEecccccccCHHHHHHHHHhccCcEEEEEeCC
Confidence 8776653 378999999999887765432111 111234577899999999999999999999999988999999999
Q ss_pred ccHHHHHHhhc----CCCEEEccccCchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCcccccc
Q 017114 211 PYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED 284 (377)
Q Consensus 211 ~~~~~l~~~~~----~~~v~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~ 284 (377)
+..+.+++.++ ..+|.+.|+++++++..+|+.||++++||. .|++|++++|||++|+|||+++.++..+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i--- 304 (357)
T cd03795 228 PLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYV--- 304 (357)
T ss_pred hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHH---
Confidence 88887777663 347999999999999999999999999986 599999999999999999999999999988
Q ss_pred CC-CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHH
Q 017114 285 QD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAAT 335 (377)
Q Consensus 285 ~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~ 335 (377)
.+ +.+|++++++|+++++++|.++++|++.++++++++++.+ ++|||+.++
T Consensus 305 ~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 305 NLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred hhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 65 8899999999999999999999999999999999999998 579999763
No 25
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=4.6e-38 Score=280.37 Aligned_cols=325 Identities=23% Similarity=0.333 Sum_probs=247.2
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV 80 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~ 80 (377)
+||+|++++...............................+.........++..+||+||+++...... +..++
T Consensus 31 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~------~~~~~ 104 (365)
T cd03809 31 LDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLL------RLRGV 104 (365)
T ss_pred cCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHHhhhcCCCeeeecccccCcc------cCCCC
Confidence 489999998876533221111111100011111111112233334445556668999999998644322 66799
Q ss_pred CEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCc
Q 017114 81 PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS 160 (377)
Q Consensus 81 ~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~ 160 (377)
|+++++||..+...................+..++.+|.++++|+..++.+.+.+..+..++.++|||++...+.+....
T Consensus 105 ~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 184 (365)
T cd03809 105 PVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEA 184 (365)
T ss_pred CEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchH
Confidence 99999999876655544433334556678889999999999999999999999876667899999999998877654322
Q ss_pred hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC----CceEEEEecCccH-HHHH----HhhcCCCEEEcccc
Q 017114 161 SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP----EARIAFIGDGPYR-EELE----KMFTGMPAVFTGML 231 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~----~~~l~i~G~g~~~-~~l~----~~~~~~~v~~~g~~ 231 (377)
. +.. .....+++.++++|++.+.||++.+++++..++ +++++++|.+... .... +.....+|.+.|++
T Consensus 185 ~--~~~-~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 261 (365)
T cd03809 185 E--VLR-ALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYV 261 (365)
T ss_pred H--HHH-HhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCC
Confidence 1 111 123457789999999999999999999998883 4799999965432 2222 22334579999999
Q ss_pred CchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 232 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 232 ~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
+.+++..+|+.||++++||..|++|++++|||++|+|||+++.+++.+++ +++|+++++.|+++++++|.++++|
T Consensus 262 ~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~-----~~~~~~~~~~~~~~~~~~i~~l~~~ 336 (365)
T cd03809 262 SDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVA-----GDAALYFDPLDPEALAAAIERLLED 336 (365)
T ss_pred ChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCcccee-----cCceeeeCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999988 4568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 312 QELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
++.+..+++++++.+++|+|+.+++++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 337 PALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999998888999999999876
No 26
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=2.5e-37 Score=275.66 Aligned_cols=334 Identities=34% Similarity=0.506 Sum_probs=259.5
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccC-CCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRS-FPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC 79 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~ 79 (377)
.||+|++++................... ..................+.+.+++.+||+||++++....... ..++..+
T Consensus 30 ~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~-~~~~~~~ 108 (374)
T cd03801 30 RGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAA-LAARLLG 108 (374)
T ss_pred cCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHH-HHHHhcC
Confidence 4999999998765332211111100000 0011111122334445667788888999999999976554443 5677889
Q ss_pred CCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccC
Q 017114 80 VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR 159 (377)
Q Consensus 80 ~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~ 159 (377)
+|++++.|+..+...... ............+..++.+|.+++.|+...+.+.+.+..+..++.++|||++...+.+..
T Consensus 109 ~~~i~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~- 186 (374)
T cd03801 109 IPLVLTVHGLEFGRPGNE-LGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP- 186 (374)
T ss_pred CcEEEEeccchhhccccc-hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc-
Confidence 999999999776543222 122334455678889999999999999999999998865557899999999988775532
Q ss_pred chHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhh----cCCCEEEcccc
Q 017114 160 SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMF----TGMPAVFTGML 231 (377)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~----~~~~v~~~g~~ 231 (377)
...+ .......+.+.++++|++...||++.+++++..+ ++++++++|.++..+.+++.+ ...+|.+.|++
T Consensus 187 -~~~~-~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~ 264 (374)
T cd03801 187 -RAAR-RRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFV 264 (374)
T ss_pred -hHHH-hhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEecc
Confidence 1111 1111345678999999999999999999999877 469999999888877777654 34479999999
Q ss_pred CchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 232 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 232 ~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
+.+++..+|+.||++++|+..+++|++++|||++|+|||+++.++..+++ .++.+|+++++.|+++++++|.+++++
T Consensus 265 ~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 265 PDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVV---EDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred ChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhHHh---cCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999 778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 017114 312 QELRETMGQAARQEM-EKYDWRAATRTIRNEQY 343 (377)
Q Consensus 312 ~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly 343 (377)
++.++++++++++.+ +.|+|+.+++++. .+|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 373 (374)
T cd03801 342 PELRRRLGEAARERVAERFSWDRVAARTE-EVY 373 (374)
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHH-Hhh
Confidence 999999999999666 6899999999998 465
No 27
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.6e-37 Score=287.04 Aligned_cols=301 Identities=18% Similarity=0.227 Sum_probs=226.2
Q ss_pred HHHHHHh--cCCCEEEeCCCchhHHHHHHHHH-----hhCCCEEEEeccCCcccccc------c--ccccc---------
Q 017114 47 IISEVAR--FKPDIIHASSPGIMVFGALIIAK-----LLCVPIVMSYHTHVPVYIPR------Y--TFSWL--------- 102 (377)
Q Consensus 47 ~~~~i~~--~~pDii~~~~~~~~~~~~~~~~~-----~~~~~~i~~~h~~~~~~~~~------~--~~~~~--------- 102 (377)
...++.. .+|||||||+|.....+.+++.. ..++|+|+++|+........ . ....+
T Consensus 600 aLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~ 679 (977)
T PLN02939 600 ALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN 679 (977)
T ss_pred HHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc
Confidence 4455554 59999999998765543333321 24579999999864221100 0 00000
Q ss_pred hhhHHHHHHHHHhcCCeeEecChhHHHHHHHhc--------ccCCCcEEEecCCCCCCCCCCccC---------------
Q 017114 103 VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR--------VTAANKIRIWKKGVDSESFHPRFR--------------- 159 (377)
Q Consensus 103 ~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~--------~~~~~~i~~i~~gv~~~~~~~~~~--------------- 159 (377)
......+.+..+..||.|+++|+.+++.+...+ .....++.+|+||+|.+.|.|...
T Consensus 680 ~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK 759 (977)
T PLN02939 680 AHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGK 759 (977)
T ss_pred cCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhh
Confidence 000112344556679999999999999887632 234678999999999999987643
Q ss_pred ---chHHHHHhhCCC--CCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCccH---HHHHHhhcC----CCE
Q 017114 160 ---SSEMRWRLSNGE--PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPYR---EELEKMFTG----MPA 225 (377)
Q Consensus 160 ---~~~~~~~~~~~~--~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~~~---~~l~~~~~~----~~v 225 (377)
....+.+++... ++.++|+++||+.+.||++.+++|+..+ ++++|+|+|+|+.. +.++.++.. .+|
T Consensus 760 ~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV 839 (977)
T PLN02939 760 AANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNI 839 (977)
T ss_pred hhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeE
Confidence 233455555432 3568999999999999999999999876 57999999999643 455555443 369
Q ss_pred EEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcccccc------CCCCeeEEeCCCCHH
Q 017114 226 VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED------QDGKIGYLFNPGDLD 299 (377)
Q Consensus 226 ~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~ 299 (377)
.|.|.++......+|+.||++|+||.+|+||++++|||+||+|+|++++||..+.+.+. .++.+|+++++.|++
T Consensus 840 ~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~e 919 (977)
T PLN02939 840 RLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQ 919 (977)
T ss_pred EEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHH
Confidence 99999977777899999999999999999999999999999999999999999988221 114689999999999
Q ss_pred HHHHHHHHHhh----CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 017114 300 DCLSKLEPLLY----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFW 350 (377)
Q Consensus 300 ~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~~ 350 (377)
+++++|.+++. |++.++++++++. .+.|||+.+++++. .+|+.++...
T Consensus 920 aLa~AL~rAL~~~~~dpe~~~~L~~~am--~~dFSWe~~A~qYe-eLY~~ll~~~ 971 (977)
T PLN02939 920 GLNSALERAFNYYKRKPEVWKQLVQKDM--NIDFSWDSSASQYE-ELYQRAVARA 971 (977)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHH--HhcCCHHHHHHHHH-HHHHHHHHhh
Confidence 99999998775 7888888887653 36899999999999 7999998643
No 28
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=3e-37 Score=275.76 Aligned_cols=332 Identities=33% Similarity=0.521 Sum_probs=250.8
Q ss_pred CCcEEEEEeeCCCCCccccCc-eeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGA-KLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC 79 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~ 79 (377)
+||+|++++............ ....... ......+..+.+.....+.+.+++.+||+||++++......+..+++..+
T Consensus 30 ~g~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~ 108 (374)
T cd03817 30 RGHEVYVVAPSYPGAPEEEEVVVVRPFRV-PTFKYPDFRLPLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLG 108 (374)
T ss_pred cCCeEEEEeCCCCCCCccccccccccccc-ccchhhhhhccccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcC
Confidence 599999999876432221111 1111110 11222223334445566667788899999999987555555666778889
Q ss_pred CCEEEEeccCCcccccccc--cccchhhHH-HHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCC
Q 017114 80 VPIVMSYHTHVPVYIPRYT--FSWLVKPMW-LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHP 156 (377)
Q Consensus 80 ~~~i~~~h~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~ 156 (377)
+|++.+.|+.+........ ......... .+++.+++.+|.+++.|+..++.+.+.+. ..++.++|||+|...+.+
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~ 186 (374)
T cd03817 109 IPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIADLLREYGV--KRPIEVIPTGIDLDRFEP 186 (374)
T ss_pred CCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHHHHHHhcCC--CCceEEcCCccchhccCc
Confidence 9999999987653321111 111112222 57788899999999999999999887653 356899999999887766
Q ss_pred ccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhc----CCCEEEc
Q 017114 157 RFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFT----GMPAVFT 228 (377)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~----~~~v~~~ 228 (377)
..... .+.... ..++++.++++|++.+.||++.++++++.+ ++++++++|+++..+.+++.++ ..+|.+.
T Consensus 187 ~~~~~-~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~ 264 (374)
T cd03817 187 VDGDD-ERRKLG-IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFT 264 (374)
T ss_pred cchhH-HHHhcC-CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEe
Confidence 43222 122222 245678899999999999999999999876 5699999999988887777653 2379999
Q ss_pred cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHH
Q 017114 229 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 308 (377)
|+++++++..+|+.||++++|+..|++|++++|||+||+|||+++.++..+++ .++.+|+++++.+. ++++++.++
T Consensus 265 g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i---~~~~~g~~~~~~~~-~~~~~i~~l 340 (374)
T cd03817 265 GFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLV---ADGENGFLFPPGDE-ALAEALLRL 340 (374)
T ss_pred ccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhhhe---ecCceeEEeCCCCH-HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 88889999998777 999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017114 309 LYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~ 345 (377)
+++++.++++++++++.++++. ..+++. .+|++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 373 (374)
T cd03817 341 LQDPELRRRLSKNAEESAEKFS---FAKKVE-KLYEE 373 (374)
T ss_pred HhChHHHHHHHHHHHHHHHHHH---HHHHHH-HHHhc
Confidence 9999999999999999987766 445554 45543
No 29
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=8e-38 Score=278.21 Aligned_cols=281 Identities=16% Similarity=0.144 Sum_probs=201.7
Q ss_pred cchHHHHHHH-HhcCCCEEEeCCCchh--HHHHH------HHHHhhCCCEEEEeccCCcccc--------cccc------
Q 017114 42 ALSPRIISEV-ARFKPDIIHASSPGIM--VFGAL------IIAKLLCVPIVMSYHTHVPVYI--------PRYT------ 98 (377)
Q Consensus 42 ~~~~~~~~~i-~~~~pDii~~~~~~~~--~~~~~------~~~~~~~~~~i~~~h~~~~~~~--------~~~~------ 98 (377)
.....+.+.+ ++.+|||||+|+.... .+..+ +..+..++|+|+++||.|+..- ..+.
T Consensus 80 ~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~C 159 (405)
T PRK10125 80 GNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKC 159 (405)
T ss_pred chHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCC
Confidence 4445666666 6889999999975432 12111 1134567999999999886530 0000
Q ss_pred -----c-----ccc---hhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHH
Q 017114 99 -----F-----SWL---VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRW 165 (377)
Q Consensus 99 -----~-----~~~---~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~ 165 (377)
. ... ....+...+.+.+.++.++++|+++++.+.+.++ ..++.+||||+|.+.+.+.......+
T Consensus 160 p~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~--~~~i~vI~NGid~~~~~~~~~~~~~~- 236 (405)
T PRK10125 160 PTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYG--PGRCRIINNGIDMATEAILAELPPVR- 236 (405)
T ss_pred CCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcC--CCCEEEeCCCcCcccccccccccccc-
Confidence 0 000 1111222333445678999999999999876654 47899999999964322211110000
Q ss_pred HhhCCCCCCCeEEEeecc--cccccHHHHHHHHHhC-CCceEEEEecCccHHHHHHhhcCCCEEEccccC-chhHHHHHh
Q 017114 166 RLSNGEPDKPLIVHVGRL--GVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQAYA 241 (377)
Q Consensus 166 ~~~~~~~~~~~i~~~G~~--~~~k~~~~l~~a~~~l-~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~-~~~~~~~~~ 241 (377)
..+++..++++|+. .+.||++.+++|+..+ ++++++++|.|+... ..++.+.|+.. .+++.++|+
T Consensus 237 ----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~~-------~~~v~~~g~~~~~~~l~~~y~ 305 (405)
T PRK10125 237 ----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPFT-------AGNVVNHGFETDKRKLMSALN 305 (405)
T ss_pred ----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCccc-------ccceEEecCcCCHHHHHHHHH
Confidence 12466789999984 4679999999999988 579999999875321 23688899874 478999999
Q ss_pred cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHH----
Q 017114 242 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET---- 317 (377)
Q Consensus 242 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~---- 317 (377)
.||++|+||..|+||++++||||||+|||+|+.|+.+|++ .+. +|++++++|+++|++++ +++..++
T Consensus 306 ~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv---~~~-~G~lv~~~d~~~La~~~-----~~~~~~~~~~~ 376 (405)
T PRK10125 306 QMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVL---QKS-GGKTVSEEEVLQLAQLS-----KPEIAQAVFGT 376 (405)
T ss_pred hCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhE---eCC-cEEEECCCCHHHHHhcc-----CHHHHHHhhhh
Confidence 9999999999999999999999999999999999999998 554 89999999999999864 4343332
Q ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHHHHH
Q 017114 318 MGQAARQEM-EKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 318 ~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~ 346 (377)
+..++++.+ ++|+++.++++++ .+|+++
T Consensus 377 ~~~~~r~~~~~~fs~~~~~~~y~-~lY~~l 405 (405)
T PRK10125 377 TLAEFSQRSRAAYSGQQMLEEYV-NFYQNL 405 (405)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH-HHHHhC
Confidence 234567766 5799999999999 699763
No 30
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=4.3e-38 Score=283.20 Aligned_cols=277 Identities=20% Similarity=0.258 Sum_probs=216.4
Q ss_pred HHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCccccccccc----ccchhhHHHHHHHHHhcCCeeEecChh
Q 017114 51 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF----SWLVKPMWLVIKFLHRAADLTLVPSVA 126 (377)
Q Consensus 51 i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~ii~~s~~ 126 (377)
++..++|+||++..... .. ......+.|++++.|.. ........ .........++++.++.+|.++++|+.
T Consensus 90 ~~~~~~Dvi~~~~~~~~-~~--~~~~~~~~~~i~~~h~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~~ 164 (392)
T cd03805 90 LPDEKYDVFIVDQVSAC-VP--LLKLFSPSKILFYCHFP--DQLLAQRGSLLKRLYRKPFDWLEEFTTGMADKIVVNSNF 164 (392)
T ss_pred cccCCCCEEEEcCcchH-HH--HHHHhcCCcEEEEEecC--hHHhcCCCcHHHHHHHHHHHHHHHHHhhCceEEEEcChh
Confidence 45679999999874432 21 12233348999988842 22111111 122233456788899999999999999
Q ss_pred HHHHHHHhcccCC-CcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC------
Q 017114 127 IGKDLEAARVTAA-NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL------ 199 (377)
Q Consensus 127 ~~~~~~~~~~~~~-~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l------ 199 (377)
.++.+.+.++... .++.+++||+|.+.+.+..... ........++.++++++|++.+.||++.++++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~--~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~ 242 (392)
T cd03805 165 TASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP--DPGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAE 242 (392)
T ss_pred HHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc--cccccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhccc
Confidence 9999887654322 3345999999988776543221 111112345778999999999999999999999876
Q ss_pred -CCceEEEEecCcc--------HHHHHHhhcC-----CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhc
Q 017114 200 -PEARIAFIGDGPY--------REELEKMFTG-----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 265 (377)
Q Consensus 200 -~~~~l~i~G~g~~--------~~~l~~~~~~-----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~ 265 (377)
++++++++|+|+. .+.+++.+++ .+|.|.|+++.+++..+|+.||++++||..|+||++++|||+|
T Consensus 243 ~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~ 322 (392)
T cd03805 243 FKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYA 322 (392)
T ss_pred ccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHc
Confidence 4789999998754 2566665544 4799999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHH
Q 017114 266 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTI 338 (377)
Q Consensus 266 G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~ 338 (377)
|+|||+++.++..+++ .++.+|+++++ |+++++++|.+++++++.++++++++++.+ ++|+|+.+++++
T Consensus 323 G~PvI~s~~~~~~e~i---~~~~~g~~~~~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 323 GKPVIACNSGGPLETV---VDGETGFLCEP-TPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred CCCEEEECCCCcHHHh---ccCCceEEeCC-CHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999999999999999 78889999876 899999999999999999999999999988 589999998764
No 31
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=9.8e-38 Score=283.12 Aligned_cols=289 Identities=22% Similarity=0.281 Sum_probs=219.6
Q ss_pred hcCCCEEEeCCCchhHHHHHHHH-HhhCCCEEEEeccCCccc-cccc-------ccccch------hhHHHHHHHHHhcC
Q 017114 53 RFKPDIIHASSPGIMVFGALIIA-KLLCVPIVMSYHTHVPVY-IPRY-------TFSWLV------KPMWLVIKFLHRAA 117 (377)
Q Consensus 53 ~~~pDii~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~-~~~~-------~~~~~~------~~~~~~~~~~~~~~ 117 (377)
+.+|||||+|++.....+.++.. ...++|+|+|+|+..... .+.. ...... .....+.+..++.|
T Consensus 131 ~~~pDIiH~Hdw~~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~a 210 (485)
T PRK14099 131 GFVPDIVHAHDWQAGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLA 210 (485)
T ss_pred CCCCCEEEECCcHHHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhc
Confidence 46999999999765544433221 124689999999864321 1000 000000 00012467888999
Q ss_pred CeeEecChhHHHHHHHhc---------ccCCCcEEEecCCCCCCCCCCccCc------------------hHHHHHhhCC
Q 017114 118 DLTLVPSVAIGKDLEAAR---------VTAANKIRIWKKGVDSESFHPRFRS------------------SEMRWRLSNG 170 (377)
Q Consensus 118 d~ii~~s~~~~~~~~~~~---------~~~~~~i~~i~~gv~~~~~~~~~~~------------------~~~~~~~~~~ 170 (377)
|.|+++|+..++.+.+.. ..+.+++.+|+||+|.+.|.|.... ...++++...
T Consensus 211 d~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~ 290 (485)
T PRK14099 211 DRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLD 290 (485)
T ss_pred CeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCC
Confidence 999999999999887532 1235789999999999988775432 2233444433
Q ss_pred C-CCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCc--cHHHHHHhhcCC--CE-EEccccCchhHHHHH-h
Q 017114 171 E-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PA-VFTGMLLGEELSQAY-A 241 (377)
Q Consensus 171 ~-~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~--~~~~l~~~~~~~--~v-~~~g~~~~~~~~~~~-~ 241 (377)
. ++.++++++||+.++||++.+++|+..+ .+++++|+|+|+ ..+.+++++.+. ++ .+.|+ ++++..+| +
T Consensus 291 ~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~--~~~l~~~~~a 368 (485)
T PRK14099 291 PDPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY--DEALAHLIQA 368 (485)
T ss_pred cccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC--CHHHHHHHHh
Confidence 2 3567899999999999999999999876 479999999886 356666665432 44 68888 48898887 5
Q ss_pred cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC---------CeeEEeCCCCHHHHHHHHHH---Hh
Q 017114 242 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG---------KIGYLFNPGDLDDCLSKLEP---LL 309 (377)
Q Consensus 242 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~l~~~i~~---~~ 309 (377)
.||++++||.+|+||++.+|||+||+|+|+++.|+.+|.+ .++ .+|+++++.|+++++++|.+ ++
T Consensus 369 ~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V---~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~ 445 (485)
T PRK14099 369 GADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTV---VDANEMAIATGVATGVQFSPVTADALAAALRKTAALF 445 (485)
T ss_pred cCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCcccee---ecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999988889999999988 443 58999999999999999997 67
Q ss_pred hCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017114 310 YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 349 (377)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~ 349 (377)
+|++.+++++++++ .++|||+.+++++. .+|+++++.
T Consensus 446 ~d~~~~~~l~~~~~--~~~fSw~~~a~~y~-~lY~~l~~~ 482 (485)
T PRK14099 446 ADPVAWRRLQRNGM--TTDVSWRNPAQHYA-ALYRSLVAE 482 (485)
T ss_pred cCHHHHHHHHHHhh--hhcCChHHHHHHHH-HHHHHHHhh
Confidence 79999999998886 36899999999999 799998753
No 32
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=1.8e-37 Score=275.65 Aligned_cols=308 Identities=24% Similarity=0.335 Sum_probs=236.2
Q ss_pred CCcEEEEEeeCCCCCc--cccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhh
Q 017114 1 MGDEVMVVTTHEGVPQ--EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLL 78 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~ 78 (377)
+||+|++++....... ...+++.+.+..... ...........+.+.+++.+||+||+++.... +.+.+.++..
T Consensus 26 ~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~dii~~~~~~~~-~~~~~~~~~~ 100 (355)
T cd03819 26 RGHRSLVASAGGRLVAELEAEGSRHIKLPFISK----NPLRILLNVARLRRLIREEKVDIVHARSRAPA-WSAYLAARRT 100 (355)
T ss_pred cCCEEEEEcCCCchHHHHHhcCCeEEEcccccc----chhhhHHHHHHHHHHHHHcCCCEEEECCCchh-HHHHHHHHhc
Confidence 5999999987553222 122333333222111 11122344567888899999999999985433 3344466778
Q ss_pred CCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCcc
Q 017114 79 CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRF 158 (377)
Q Consensus 79 ~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~ 158 (377)
++|++++.|+.++... ..+.+++.+|.++++|+...+.+.+.++.+..++.++|||+|...+.+..
T Consensus 101 ~~~~i~~~h~~~~~~~--------------~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~ 166 (355)
T cd03819 101 RPPFVTTVHGFYSVNF--------------RYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGA 166 (355)
T ss_pred CCCEEEEeCCchhhHH--------------HHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccc
Confidence 9999999998754321 33456778999999999999999877766778999999999998876543
Q ss_pred CchH----HHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHH----HHhhc----C
Q 017114 159 RSSE----MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREEL----EKMFT----G 222 (377)
Q Consensus 159 ~~~~----~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l----~~~~~----~ 222 (377)
.... .+.... ..++.++++++|++.+.||++.++++++.+ ++++++++|.++..+.+ .+.+. .
T Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~ 245 (355)
T cd03819 167 VPPERILALAREWP-LPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQ 245 (355)
T ss_pred cchHHHHHHHHHcC-CCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCc
Confidence 3211 122222 245678899999999999999999999887 46999999987644333 22222 3
Q ss_pred CCEEEccccCchhHHHHHhcCCEEEecc-CCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHH
Q 017114 223 MPAVFTGMLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 301 (377)
Q Consensus 223 ~~v~~~g~~~~~~~~~~~~~adi~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 301 (377)
.+|.+.|+ .+++..+|+.||++++|| ..|++|++++|||++|+|||+++.++..+++ .++.+|++++++|++++
T Consensus 246 ~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i---~~~~~g~~~~~~~~~~l 320 (355)
T cd03819 246 DRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARETV---RPGETGLLVPPGDAEAL 320 (355)
T ss_pred ceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHH---hCCCceEEeCCCCHHHH
Confidence 46999999 489999999999999999 7899999999999999999999999999999 78889999999999999
Q ss_pred HHHHHHHh-hCHHHHHHHHHHHHHHH-HhcCHHH
Q 017114 302 LSKLEPLL-YNQELRETMGQAARQEM-EKYDWRA 333 (377)
Q Consensus 302 ~~~i~~~~-~~~~~~~~~~~~~~~~~-~~~s~~~ 333 (377)
+++|..++ .+++.+.+++++|++.+ ++|+|+.
T Consensus 321 ~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 321 AQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99997555 48999999999999999 5799875
No 33
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.2e-37 Score=275.52 Aligned_cols=290 Identities=18% Similarity=0.210 Sum_probs=220.9
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEE-eccCCcccccccccccchhhHHHHHH--HHHhcCCee
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS-YHTHVPVYIPRYTFSWLVKPMWLVIK--FLHRAADLT 120 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~-~h~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~i 120 (377)
...+..++++.+||+||+|......+ +.+.++..++|++++ .|...+.. ........+....+ .+...+| +
T Consensus 269 ~~~l~~~ir~~rpDIVHt~~~~a~l~-g~laA~lagvpviv~~~h~~~~~~----~~r~~~~e~~~~~~a~~i~~~sd-~ 342 (578)
T PRK15490 269 IKHLVPHLCERKLDYLSVWQDGACLM-IALAALIAGVPRIQLGLRGLPPVV----RKRLFKPEYEPLYQALAVVPGVD-F 342 (578)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccHHH-HHHHHHhcCCCEEEEeecccCCcc----hhhHHHHHHHHhhhhceeEecch-h
Confidence 45788899999999999998654434 455778889999765 55522211 00100000000111 1234445 6
Q ss_pred EecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCch-HHHHHhhC-CCCCCCeEEEeecccccccHHHHHHHHHh
Q 017114 121 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-EMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDR 198 (377)
Q Consensus 121 i~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 198 (377)
++.|....+.+.+.++.+.+++.+||||+|...|.+..... ..+..... ..++.++++++|++.+.||...+++++..
T Consensus 343 v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~ 422 (578)
T PRK15490 343 MSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAAR 422 (578)
T ss_pred hhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHH
Confidence 67888888888887777889999999999998877653221 12222111 12456789999999999999999988865
Q ss_pred C----CCceEEEEecCccHHHHHHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeE
Q 017114 199 L----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 199 l----~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
+ ++++|+|+|+|+..+.+++.+.+ .+|.|.|+. +++..+|+.+|++|+||.+|+||++++|||+||+|||
T Consensus 423 llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVV 500 (578)
T PRK15490 423 YLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVI 500 (578)
T ss_pred HHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEE
Confidence 4 78999999999988888877654 469999996 7899999999999999999999999999999999999
Q ss_pred EecCCCCCccccccCCCCeeEEeCCCCHHHHHHHH---HHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 017114 271 GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL---EPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i---~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~ 345 (377)
+++.++.+|++ .++.+|+++++.|++++++++ ..+.++.+.+..+++++++.+ ++|||+.+++++. .+|..
T Consensus 501 ATdvGG~~EiV---~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~-ki~~~ 575 (578)
T PRK15490 501 STPAGGSAECF---IEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFV-KTIAS 575 (578)
T ss_pred EeCCCCcHHHc---ccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHh
Confidence 99999999999 899999999999988888876 344445555667889999998 5799999999999 58764
No 34
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.2e-37 Score=282.82 Aligned_cols=297 Identities=18% Similarity=0.261 Sum_probs=223.7
Q ss_pred HHHHHHh--cCCCEEEeCCCchhHHHHHHHHHh-------hCCCEEEEeccCCcccccccc-------cccchh-----h
Q 017114 47 IISEVAR--FKPDIIHASSPGIMVFGALIIAKL-------LCVPIVMSYHTHVPVYIPRYT-------FSWLVK-----P 105 (377)
Q Consensus 47 ~~~~i~~--~~pDii~~~~~~~~~~~~~~~~~~-------~~~~~i~~~h~~~~~~~~~~~-------~~~~~~-----~ 105 (377)
..+.+++ .+|||||+|++.....+ .++.+. .++|+|+++|+.......... ...... .
T Consensus 131 ~l~~~~~~~~~pDiiH~hdw~t~l~~-~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~ 209 (489)
T PRK14098 131 VLETLQRLGWKPDIIHCHDWYAGLVP-LLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGD 209 (489)
T ss_pred HHHHHHhcCCCCCEEEecCcHHHHHH-HHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCC
Confidence 4455554 58999999996654443 334332 379999999986432110000 000000 0
Q ss_pred HHHHHHHHHhcCCeeEecChhHHHHHHHh----ccc------CCCcEEEecCCCCCCCCCCccCc---------------
Q 017114 106 MWLVIKFLHRAADLTLVPSVAIGKDLEAA----RVT------AANKIRIWKKGVDSESFHPRFRS--------------- 160 (377)
Q Consensus 106 ~~~~~~~~~~~~d~ii~~s~~~~~~~~~~----~~~------~~~~i~~i~~gv~~~~~~~~~~~--------------- 160 (377)
...+.+..+..||.|+++|+..++.+.+. ++. ...++.+|+||+|.+.|.|....
T Consensus 210 ~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~ 289 (489)
T PRK14098 210 EVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKL 289 (489)
T ss_pred cccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHH
Confidence 12356678899999999999999988752 122 25789999999999998875431
Q ss_pred ---hHHHHHhhCC-CCCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCc--cHHHHHHhhcC--CCEEEccc
Q 017114 161 ---SEMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTG--MPAVFTGM 230 (377)
Q Consensus 161 ---~~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~--~~~~l~~~~~~--~~v~~~g~ 230 (377)
...++.+... .++.++++++||+.+.||++.+++|+..+ ++++|+|+|+|+ +.+.+++++.+ .+|.+.|.
T Consensus 290 ~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~ 369 (489)
T PRK14098 290 ENKKALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTE 369 (489)
T ss_pred HHHHHHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 1222333332 23568999999999999999999999887 579999999887 34677776654 36999999
Q ss_pred cCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcccccc-CCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 231 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED-QDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
++.+++..+|+.||++++||..|++|++.+|||+||+|+|+++.|+..+.+.+. .++.+|+++++.|+++++++|.+++
T Consensus 370 ~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 370 FTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred cCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 998899999999999999999999999999999999999999999998887210 1367899999999999999999865
Q ss_pred ---hCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 017114 310 ---YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 347 (377)
Q Consensus 310 ---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~ 347 (377)
+|++.+++++.++. .++|||+..++++. .+|++++
T Consensus 450 ~~~~~~~~~~~~~~~~~--~~~fsw~~~a~~y~-~lY~~~~ 487 (489)
T PRK14098 450 ALYHDEERWEELVLEAM--ERDFSWKNSAEEYA-QLYRELL 487 (489)
T ss_pred HHHcCHHHHHHHHHHHh--cCCCChHHHHHHHH-HHHHHHh
Confidence 57777777766553 25799999999999 7999886
No 35
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=4.7e-37 Score=274.41 Aligned_cols=329 Identities=33% Similarity=0.523 Sum_probs=256.8
Q ss_pred CCcEEEEEeeCCCCCccccCcee-------ecccCCCCCccccccccccchHHHHHHHH--hcCCCEEEeCCCchhHHHH
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKL-------IGSRSFPCPWYQKVPLSLALSPRIISEVA--RFKPDIIHASSPGIMVFGA 71 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~pDii~~~~~~~~~~~~ 71 (377)
+||+|++++.............. .......................+.+.++ ..+||+||++......+..
T Consensus 30 ~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~ 109 (377)
T cd03798 30 RGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAA 109 (377)
T ss_pred CCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHH
Confidence 59999999987653322111100 00001111111222233455567888888 8999999999766566666
Q ss_pred HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCC
Q 017114 72 LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS 151 (377)
Q Consensus 72 ~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~ 151 (377)
...++..++|++++.|+.......... ......+..++.+|.+++.|+...+.+.+.+ .+..++.++|||+|.
T Consensus 110 ~~~~~~~~~~~i~~~h~~~~~~~~~~~------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-~~~~~~~~i~~~~~~ 182 (377)
T cd03798 110 ALLKRKLGIPLVVTLHGSDVNLLPRKR------LLRALLRRALRRADAVIAVSEALADELKALG-IDPEKVTVIPNGVDT 182 (377)
T ss_pred HHHHHhcCCCEEEEeecchhcccCchh------hHHHHHHHHHhcCCeEEeCCHHHHHHHHHhc-CCCCceEEcCCCcCc
Confidence 667788889999999997654332211 3456778889999999999999999999876 467899999999999
Q ss_pred CCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhc----CC
Q 017114 152 ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFT----GM 223 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~----~~ 223 (377)
..+.+...... .+. ....+++.++++|++.+.||++.++++++.+ ++++++++|.++..+.+.+.++ ..
T Consensus 183 ~~~~~~~~~~~--~~~-~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~ 259 (377)
T cd03798 183 ERFSPADRAEA--RKL-GLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLED 259 (377)
T ss_pred ccCCCcchHHH--Hhc-cCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcc
Confidence 88766533221 111 1234678899999999999999999999887 3799999999887777777654 34
Q ss_pred CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHH
Q 017114 224 PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 224 ~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
+|.+.|+++++++..+|++||++++|+..|++|++++|||++|+|||+++.++..+++ .++.+|+++++.|++++++
T Consensus 260 ~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~---~~~~~g~~~~~~~~~~l~~ 336 (377)
T cd03798 260 RVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPEII---TDGENGLLVPPGDPEALAE 336 (377)
T ss_pred eEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHHHh---cCCcceeEECCCCHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999 8888899999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 017114 304 KLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~ 345 (377)
+|.+++++++. ++..++++.+ ++|+|+.+++++. .+|++
T Consensus 337 ~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~ 376 (377)
T cd03798 337 AILRLLADPWL--RLGRAARRRVAERFSWENVAERLL-ELYRE 376 (377)
T ss_pred HHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHHHHH-HHHhh
Confidence 99999999876 6666776666 6899999999998 57765
No 36
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=7.6e-37 Score=282.72 Aligned_cols=294 Identities=21% Similarity=0.290 Sum_probs=215.8
Q ss_pred chHHHHHHHH-h--cCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccc---h--hhHH--HHHHH
Q 017114 43 LSPRIISEVA-R--FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWL---V--KPMW--LVIKF 112 (377)
Q Consensus 43 ~~~~~~~~i~-~--~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~---~--~~~~--~~~~~ 112 (377)
+...+.+.+. + .+||+||+|.+.. ++++..+++..|+|++.+.|.............+. . .... ..+..
T Consensus 370 f~~~~~~~~~~~~~~~pDlIHahy~d~-glva~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~ 448 (784)
T TIGR02470 370 FAEDAEKEILAELQGKPDLIIGNYSDG-NLVASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLI 448 (784)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCch-HHHHHHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHH
Confidence 3344555443 2 3799999998653 45567799999999999999764322211111111 0 1111 11457
Q ss_pred HHhcCCeeEecChhHHH----HHHHh-----------c----c--cCCCcEEEecCCCCCCCCCCccCchHH--------
Q 017114 113 LHRAADLTLVPSVAIGK----DLEAA-----------R----V--TAANKIRIWKKGVDSESFHPRFRSSEM-------- 163 (377)
Q Consensus 113 ~~~~~d~ii~~s~~~~~----~~~~~-----------~----~--~~~~~i~~i~~gv~~~~~~~~~~~~~~-------- 163 (377)
+.+.||.||+.|..... .+.++ + + .+..++.++|+|+|...|.|.......
T Consensus 449 ~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~i 528 (784)
T TIGR02470 449 AMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEI 528 (784)
T ss_pred HHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcch
Confidence 88889999999964422 22211 1 1 145789999999999988765432211
Q ss_pred ----------HHHhhC-CCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCcc------------HHHH
Q 017114 164 ----------RWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPY------------REEL 216 (377)
Q Consensus 164 ----------~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~------------~~~l 216 (377)
+..++. ..+++++|+++||+.+.||++.+++|+..+ ++++|+|+|++.. .+.+
T Consensus 529 e~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L 608 (784)
T TIGR02470 529 EELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKM 608 (784)
T ss_pred hhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHH
Confidence 122221 245778999999999999999999999765 3588999997642 1234
Q ss_pred HHhhcC----CCEEEcccc-CchhHHHHHh----cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC
Q 017114 217 EKMFTG----MPAVFTGML-LGEELSQAYA----SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG 287 (377)
Q Consensus 217 ~~~~~~----~~v~~~g~~-~~~~~~~~~~----~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~ 287 (377)
.+++.+ .+|.|.|+. +..+..++|+ .+|++|+||.+|+||++++||||||+|||+|+.||..|++ .++
T Consensus 609 ~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV---~dg 685 (784)
T TIGR02470 609 HNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEII---QDG 685 (784)
T ss_pred HHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHh---cCC
Confidence 444443 369999985 4456555554 3579999999999999999999999999999999999999 899
Q ss_pred CeeEEeCCCCHHHHHHHHHHHh----hCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Q 017114 288 KIGYLFNPGDLDDCLSKLEPLL----YNQELRETMGQAARQEM-EKYDWRAATRTIRN 340 (377)
Q Consensus 288 ~~g~~~~~~~~~~l~~~i~~~~----~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~ 340 (377)
.+|+++++.|+++++++|.+++ .|++.++++++++++.+ ++|||+.+++++++
T Consensus 686 ~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~ 743 (784)
T TIGR02470 686 VSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLT 743 (784)
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999876 69999999999999987 68999999999984
No 37
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=6.5e-37 Score=272.54 Aligned_cols=320 Identities=24% Similarity=0.360 Sum_probs=236.6
Q ss_pred CCcEEEEEeeCCCCCcc-ccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhC
Q 017114 1 MGDEVMVVTTHEGVPQE-FYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC 79 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~ 79 (377)
+||+|++++..++.... ....... ............+.....+.+.+++.+||+||+|.+....+..+......+
T Consensus 28 ~g~~v~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~~l~~~~~~~ 103 (360)
T cd04951 28 KGHQVAIISLTGESEVKPPIDATII----LNLNMSKNPLSFLLALWKLRKILRQFKPDVVHAHMFHANIFARLLRLFLPS 103 (360)
T ss_pred CCceEEEEEEeCCCCccchhhccce----EEecccccchhhHHHHHHHHHHHHhcCCCEEEEcccchHHHHHHHHhhCCC
Confidence 59999999876542221 1111111 011111111112333456778888999999999986544333322222346
Q ss_pred CCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccC
Q 017114 80 VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR 159 (377)
Q Consensus 80 ~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~ 159 (377)
.|++.+.|+.... ........+.....++.++++|+...+.+.+.+..+.+++.++|||+|...+.+...
T Consensus 104 ~~~v~~~h~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~ 173 (360)
T cd04951 104 PPLICTAHSKNEG----------GRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPA 173 (360)
T ss_pred CcEEEEeeccCch----------hHHHHHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchH
Confidence 7899998875421 112233445666778889999999999998887667789999999999887765432
Q ss_pred ch-HHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhcC----CCEEEccc
Q 017114 160 SS-EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG----MPAVFTGM 230 (377)
Q Consensus 160 ~~-~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~ 230 (377)
.. ..+..+. ..+++++++++|++.+.||++.++++++.+ ++++|+|+|+|+..+.+++.+.+ .+|.+.|+
T Consensus 174 ~~~~~~~~~~-~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~ 252 (360)
T cd04951 174 RRLKIRNALG-VKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGL 252 (360)
T ss_pred HHHHHHHHcC-cCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecc
Confidence 21 2222222 235678899999999999999999999876 47999999999988877776553 36999998
Q ss_pred cCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 231 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
+ +++..+|+.||++++||..|++|++++|||++|+|||+++.++..+++ .+ +|.+++++|++++++++.++++
T Consensus 253 ~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i---~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 253 R--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVREVV---GD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred c--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhhEe---cC--CceEeCCCCHHHHHHHHHHHHh
Confidence 6 789999999999999999999999999999999999999999999999 44 7888999999999999999994
Q ss_pred -CHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 017114 311 -NQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 311 -~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~ 344 (377)
+++.+..++++ ++.+ ++|+|+.+++++. .+|+
T Consensus 326 ~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~-~~y~ 359 (360)
T cd04951 326 MSGEERDIIGAR-RERIVKKFSINSIVQQWL-TLYT 359 (360)
T ss_pred CCHHHHHHHHHH-HHHHHHhcCHHHHHHHHH-HHhh
Confidence 66666666666 6655 6899999999999 6885
No 38
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=5.2e-37 Score=275.90 Aligned_cols=332 Identities=26% Similarity=0.374 Sum_probs=252.3
Q ss_pred CCcEEEEEeeCCCCCc----------cccCceeecccCCCCCcc---ccccccccchHHHHHHHH--hcCCCEEEeCCC-
Q 017114 1 MGDEVMVVTTHEGVPQ----------EFYGAKLIGSRSFPCPWY---QKVPLSLALSPRIISEVA--RFKPDIIHASSP- 64 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~--~~~pDii~~~~~- 64 (377)
+||+|++++....... ...++++..+........ .+......+.......+. ..+||+||++++
T Consensus 30 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 109 (394)
T cd03794 30 RGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLLNYLSFALSALLALLKRRRRPDVIIATSPP 109 (394)
T ss_pred CCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHHhhhHHHHHHHHHHHhcccCCCEEEEcCCh
Confidence 4999999998654322 123444444443322211 111112223333444443 789999999984
Q ss_pred chhHHHHHHHHHhhCCCEEEEeccCCcccccccc---c-ccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCC
Q 017114 65 GIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYT---F-SWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAAN 140 (377)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 140 (377)
..........++..++|+++++|+.++....... . .........+++..++.+|.+++.|+...+.+.. ...+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~-~~~~~~ 188 (394)
T cd03794 110 LLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRADAIVVISPGMREYLVR-RGVPPE 188 (394)
T ss_pred HHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHh-cCCCcC
Confidence 3334445556666799999999997765432111 1 1112456677888999999999999999999983 334678
Q ss_pred cEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC---CceEEEEecCccHHHHH
Q 017114 141 KIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP---EARIAFIGDGPYREELE 217 (377)
Q Consensus 141 ~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~---~~~l~i~G~g~~~~~l~ 217 (377)
++.++|||++...+.+...... +.. .....++..++++|++...||++.++++++.+. +++++++|+|+..+.+.
T Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~ 266 (394)
T cd03794 189 KISVIPNGVDLELFKPPPADES-LRK-ELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELK 266 (394)
T ss_pred ceEEcCCCCCHHHcCCccchhh-hhh-ccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHH
Confidence 9999999999877665432221 111 123456789999999999999999999998873 79999999998887777
Q ss_pred Hhhc---CCCEEEccccCchhHHHHHhcCCEEEeccCCccc-----chHHHHHHhcCCCeEEecCCCCCccccccCCCCe
Q 017114 218 KMFT---GMPAVFTGMLLGEELSQAYASGDVFVMPSESETL-----GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKI 289 (377)
Q Consensus 218 ~~~~---~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~-----~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~ 289 (377)
+.+. ..+|.+.|+++++++..+|+.||++++|+..+++ |++++|||++|+|||+++.++..+.+ .++.+
T Consensus 267 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~---~~~~~ 343 (394)
T cd03794 267 ELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV---EEAGA 343 (394)
T ss_pred HHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh---ccCCc
Confidence 6432 2479999999999999999999999999987754 88999999999999999999999999 77789
Q ss_pred eEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-hcCHHHHHHHH
Q 017114 290 GYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTI 338 (377)
Q Consensus 290 g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~ 338 (377)
|++++++|+++++++|.++++|++.++++++++++.++ +|+|+.+++++
T Consensus 344 g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 344 GLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred ceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 99999999999999999999999999999999999985 89999999876
No 39
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=2.4e-37 Score=284.51 Aligned_cols=292 Identities=23% Similarity=0.308 Sum_probs=220.6
Q ss_pred HHHHHHHh--cCCCEEEeCCCchhHHHHHHHHHh------hCCCEEEEeccCCcccccccc------ccc---------c
Q 017114 46 RIISEVAR--FKPDIIHASSPGIMVFGALIIAKL------LCVPIVMSYHTHVPVYIPRYT------FSW---------L 102 (377)
Q Consensus 46 ~~~~~i~~--~~pDii~~~~~~~~~~~~~~~~~~------~~~~~i~~~h~~~~~~~~~~~------~~~---------~ 102 (377)
.+.+.+++ .+|||||+|++.....+.+ +++. .++|+|+++|+.......... ..+ .
T Consensus 118 ~~~~~l~~~~~~pDviH~hd~~t~~~~~~-l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 196 (476)
T cd03791 118 AALELLRRLGWKPDIIHCHDWHTGLVPAL-LKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLE 196 (476)
T ss_pred HHHHHHHhcCCCCcEEEECchHHHHHHHH-HHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccc
Confidence 44555655 7999999999765444333 3333 489999999996543211000 000 0
Q ss_pred hhhHHHHHHHHHhcCCeeEecChhHHHHHHHh---------cccCCCcEEEecCCCCCCCCCCccCch------------
Q 017114 103 VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA---------RVTAANKIRIWKKGVDSESFHPRFRSS------------ 161 (377)
Q Consensus 103 ~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~---------~~~~~~~i~~i~~gv~~~~~~~~~~~~------------ 161 (377)
......+++..++.+|.++++|+..++.+.+. ......++.+|+||+|.+.|.+.....
T Consensus 197 ~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~ 276 (476)
T cd03791 197 FYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEG 276 (476)
T ss_pred cCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCcccccc
Confidence 00112467888999999999999999887642 122457999999999999887754321
Q ss_pred ------HHHHHhhCC-CCCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCcc--HHHHHHhhcC--CCEEEc
Q 017114 162 ------EMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPY--REELEKMFTG--MPAVFT 228 (377)
Q Consensus 162 ------~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~~--~~~l~~~~~~--~~v~~~ 228 (377)
..++++... .++.++++|+||+.+.||++.++++++.+ .+++|+++|+|+. .+.++++..+ .++.+.
T Consensus 277 ~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~ 356 (476)
T cd03791 277 KAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVL 356 (476)
T ss_pred HHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEE
Confidence 123333332 35788999999999999999999999887 3589999998753 3556655554 478776
Q ss_pred cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCC------eeEEeCCCCHHHHH
Q 017114 229 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGK------IGYLFNPGDLDDCL 302 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~l~ 302 (377)
+..+.+++..+|+.||++++||..|++|++.+|||+||+|||+++.++..|.+ .++. +|+++++.|+++++
T Consensus 357 ~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v---~~~~~~~~~~~G~~~~~~~~~~l~ 433 (476)
T cd03791 357 IGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTV---IDYNEDTGEGTGFVFEGYNADALL 433 (476)
T ss_pred EeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceE---eCCcCCCCCCCeEEeCCCCHHHHH
Confidence 66667778899999999999999999999999999999999999999999999 6766 99999999999999
Q ss_pred HHHHHHhh---CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017114 303 SKLEPLLY---NQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 303 ~~i~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~ 344 (377)
++|.++++ +++.+.++++++.+ +.|+|+.+++++. .+|+
T Consensus 434 ~~i~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~~y~ 475 (476)
T cd03791 434 AALRRALALYRDPEAWRKLQRNAMA--QDFSWDRSAKEYL-ELYR 475 (476)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHhc--cCCChHHHHHHHH-HHHh
Confidence 99999875 56666666665543 4799999999999 5875
No 40
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=5.3e-37 Score=270.90 Aligned_cols=317 Identities=14% Similarity=0.149 Sum_probs=224.7
Q ss_pred CC-cEEEEEeeCCCCC---------------c-------cccCceeecccCCCCCcccc-c---cccccchHHHHHHHHh
Q 017114 1 MG-DEVMVVTTHEGVP---------------Q-------EFYGAKLIGSRSFPCPWYQK-V---PLSLALSPRIISEVAR 53 (377)
Q Consensus 1 ~G-~~V~v~~~~~~~~---------------~-------~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~i~~ 53 (377)
+| |+|+|+.+..... . ++.+.++.+++.++.+.+.. + .........+.+.+++
T Consensus 35 ~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~ 114 (462)
T PLN02846 35 DGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISFLPKFSIKFYPGKFSTDKRSILPVGDISETIPD 114 (462)
T ss_pred cCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEEecccccccCcccccccccccCChHHHHHHHHh
Confidence 59 8999998854210 0 01123455666666665443 2 1122345789999999
Q ss_pred cCCCEEEeCCCchhHHH--HHHHHHhhCCCEEEEeccCCcccccccccccchhh-HHHHHHHHHh-cCCeeEecChhHHH
Q 017114 54 FKPDIIHASSPGIMVFG--ALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKP-MWLVIKFLHR-AADLTLVPSVAIGK 129 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~d~ii~~s~~~~~ 129 (377)
.+|||||++++...++. +..++++.++ +|.++|..++.+............ .+.+.+++.+ .+|.++++|....+
T Consensus 115 ~~pDVIHv~tP~~LG~~~~g~~~~~k~~~-vV~tyHT~y~~Y~~~~~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~ 193 (462)
T PLN02846 115 EEADIAVLEEPEHLTWYHHGKRWKTKFRL-VIGIVHTNYLEYVKREKNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD 193 (462)
T ss_pred cCCCEEEEcCchhhhhHHHHHHHHhcCCc-EEEEECCChHHHHHHhccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH
Confidence 99999999999777764 4445555555 787899977655443321111221 2222333322 38999999986655
Q ss_pred HHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCC--CCeEEEeecccccccHHHHHHHHHhC----CCce
Q 017114 130 DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPD--KPLIVHVGRLGVEKSLDFLKRVMDRL----PEAR 203 (377)
Q Consensus 130 ~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~ 203 (377)
+.+ .+...++|+|.+.|.+.... .+... ...+ .+.++|+||+.+.||++.++++++.+ ++++
T Consensus 194 -l~~-------~~i~~v~GVd~~~f~~~~~~--~~~~~--~~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~ 261 (462)
T PLN02846 194 -YPR-------SIICNVHGVNPKFLEIGKLK--LEQQK--NGEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLE 261 (462)
T ss_pred -Hhh-------CEEecCceechhhcCCCccc--Hhhhc--CCCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeE
Confidence 432 23344589999988766432 11111 1223 24689999999999999999999865 6899
Q ss_pred EEEEecCccHHHHHHhhcCCC--E-EEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcc
Q 017114 204 IAFIGDGPYREELEKMFTGMP--A-VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 280 (377)
Q Consensus 204 l~i~G~g~~~~~l~~~~~~~~--v-~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~ 280 (377)
++|+|+|+..+.+++.+.+.+ + .|.|.. +..++|+.+|++|+||..|++|++++||||||+|||+++.++ .++
T Consensus 262 l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~---~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~ 337 (462)
T PLN02846 262 VDLYGSGEDSDEVKAAAEKLELDVRVYPGRD---HADPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NEF 337 (462)
T ss_pred EEEECCCccHHHHHHHHHhcCCcEEEECCCC---CHHHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC-cce
Confidence 999999999999999887653 2 366754 344799999999999999999999999999999999999997 488
Q ss_pred ccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017114 281 IPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 281 ~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~ 345 (377)
+ .++.+|++++ |.+++++++.+++.++. ..++.++ .++|||+.++++++ .+|+-
T Consensus 338 v---~~~~ng~~~~--~~~~~a~ai~~~l~~~~--~~~~~~a---~~~~SWe~~~~~l~-~~~~~ 391 (462)
T PLN02846 338 F---KQFPNCRTYD--DGKGFVRATLKALAEEP--APLTDAQ---RHELSWEAATERFL-RVADL 391 (462)
T ss_pred e---ecCCceEecC--CHHHHHHHHHHHHccCc--hhHHHHH---HHhCCHHHHHHHHH-HHhcc
Confidence 8 7889998885 89999999999998532 2223222 25899999999999 57764
No 41
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=5.1e-36 Score=266.17 Aligned_cols=319 Identities=26% Similarity=0.340 Sum_probs=245.4
Q ss_pred CCcEEEEEeeCCCCC--ccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHH-h
Q 017114 1 MGDEVMVVTTHEGVP--QEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK-L 77 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~-~ 77 (377)
+||+|++++...... ....++....++.... .......+.....+.+.+++.+||+||++......+..+ .++ .
T Consensus 26 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~-~~~~~ 102 (359)
T cd03808 26 AGYEVHVVAPPGDELEELEALGVKVIPIPLDRR--GINPFKDLKALLRLYRLLRKERPDIVHTHTPKPGILGRL-AARLA 102 (359)
T ss_pred cCCeeEEEecCCCcccccccCCceEEecccccc--ccChHhHHHHHHHHHHHHHhcCCCEEEEccccchhHHHH-HHHHc
Confidence 599999999876543 2233344333322210 111122334456778888999999999997544433333 344 4
Q ss_pred hCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccC-CCcEEEecCCCCCCCCCC
Q 017114 78 LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTA-ANKIRIWKKGVDSESFHP 156 (377)
Q Consensus 78 ~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~~~i~~i~~gv~~~~~~~ 156 (377)
.+.+++...|+........ .........++++..+.+|.+++.|+...+.+.+.+..+ ..++.+.+++++...+.+
T Consensus 103 ~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (359)
T cd03808 103 GVPKVIYTVHGLGFVFTSG---GLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSP 179 (359)
T ss_pred CCCCEEEEecCcchhhccc---hhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCc
Confidence 5667788778764332221 113445566788899999999999999999999887543 467778899999877655
Q ss_pred ccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHH-----hhcCCCEEE
Q 017114 157 RFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEK-----MFTGMPAVF 227 (377)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~-----~~~~~~v~~ 227 (377)
.... ...+++.++++|++.+.||++.++++++.+ ++++++++|.++....... .....+|.+
T Consensus 180 ~~~~---------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~ 250 (359)
T cd03808 180 SPEP---------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEF 250 (359)
T ss_pred cccc---------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEE
Confidence 4221 134678999999999999999999999876 6799999998875544332 222347999
Q ss_pred ccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHH
Q 017114 228 TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 307 (377)
Q Consensus 228 ~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 307 (377)
.|+. +++..+|+.||++++|+..|++|++++|||++|+|||+++.++..+++ .++.+|++++++|+++++++|.+
T Consensus 251 ~g~~--~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i---~~~~~g~~~~~~~~~~~~~~i~~ 325 (359)
T cd03808 251 LGFR--DDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCREAV---IDGVNGFLVPPGDAEALADAIER 325 (359)
T ss_pred eecc--ccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchhhh---hcCcceEEECCCCHHHHHHHHHH
Confidence 9994 899999999999999999999999999999999999999999999999 77889999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 017114 308 LLYNQELRETMGQAARQEM-EKYDWRAATRTIR 339 (377)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 339 (377)
++.|++.+.++++++++.+ ++|+|+.+++++.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 326 LIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 9999999999999999996 6899999998875
No 42
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=5.6e-37 Score=272.78 Aligned_cols=310 Identities=21% Similarity=0.251 Sum_probs=225.4
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV 80 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~ 80 (377)
+||+|++++...............++..+..+. .....+.....+.+.+++.+||+||++......+.. .+++..+.
T Consensus 28 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~-~~~~~~~~ 104 (358)
T cd03812 28 SKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPA--RKKNPLKYFKKLYKLIKKNKYDIVHVHGSSASGFIL-LAAKKAGV 104 (358)
T ss_pred cceEEEEEEeCCCCcchHHHHHHcCCeEEEecC--CCccHHHHHHHHHHHHhcCCCCEEEEeCcchhHHHH-HHHhhCCC
Confidence 489999999876532111111111111111111 111223345667778888999999999876443433 34455666
Q ss_pred CE-EEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccC
Q 017114 81 PI-VMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR 159 (377)
Q Consensus 81 ~~-i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~ 159 (377)
|. +++.|+......... . . .....+.+.+.+.+|.++++|+...+.+... ....++.++|||+|.+.+.+...
T Consensus 105 ~~~v~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~~~~~~~vi~ngvd~~~~~~~~~ 178 (358)
T cd03812 105 KVRIAHSHNTSDSHDKKK--K-I-LKYKVLRKLINRLATDYLACSEEAGKWLFGK--VKNKKFKVIPNGIDLEKFIFNEE 178 (358)
T ss_pred CeEEEEeccccccccccc--h-h-hHHHHHHHHHHhcCCEEEEcCHHHHHHHHhC--CCcccEEEEeccCcHHHcCCCch
Confidence 65 556666443211111 1 0 0113556778899999999999999988776 35678999999999887765433
Q ss_pred chHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhcC----CCEEEcccc
Q 017114 160 SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG----MPAVFTGML 231 (377)
Q Consensus 160 ~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~ 231 (377)
....+... ....+++.|+|+|++.+.||++.+++++..+ ++++++|+|+|+..+.+++.+++ .+|.+.|+
T Consensus 179 ~~~~~~~~-~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~- 256 (358)
T cd03812 179 IRKKRREL-GILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV- 256 (358)
T ss_pred hhhHHHHc-CCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc-
Confidence 32222222 2345778999999999999999999999877 58999999999988877776643 36999998
Q ss_pred CchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 232 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 232 ~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.+++.++|+.||++|+||..|++|++++|||++|+|||+++.++.++++ .+ +.+++..++++++++++|.++++|
T Consensus 257 -~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i---~~-~~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 257 -RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDL---TD-LVKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred -cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhh---cc-CccEEeCCCCHHHHHHHHHHHHhC
Confidence 4889999999999999999999999999999999999999999999998 66 566777777889999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 017114 312 QELRETMGQAARQEM 326 (377)
Q Consensus 312 ~~~~~~~~~~~~~~~ 326 (377)
++.++.++..+....
T Consensus 332 ~~~~~~~~~~~~~~~ 346 (358)
T cd03812 332 DRRERSSESIKKKGL 346 (358)
T ss_pred cchhhhhhhhhhccc
Confidence 998888877665543
No 43
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=2.2e-36 Score=269.28 Aligned_cols=322 Identities=26% Similarity=0.340 Sum_probs=247.2
Q ss_pred CCcEEEEEeeCCCCCc----cccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHH
Q 017114 1 MGDEVMVVTTHEGVPQ----EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK 76 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~ 76 (377)
.||+|.+++....... ...++++..+.. +.. ...+....++.+.+++.+||+||++......+. ...++
T Consensus 28 ~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~---~~~---~~~~~~~~~~~~~~~~~~~div~~~~~~~~~~~-~~~~~ 100 (365)
T cd03807 28 DRFEHVVISLTDRGELGEELEEAGVPVYCLGK---RPG---RPDPGALLRLYKLIRRLRPDVVHTWMYHADLYG-GLAAR 100 (365)
T ss_pred ccceEEEEecCcchhhhHHHHhcCCeEEEEec---ccc---cccHHHHHHHHHHHHhhCCCEEEeccccccHHH-HHHHH
Confidence 4899999987643221 112333332221 111 133445567888899999999999875543333 23344
Q ss_pred h-hCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCC
Q 017114 77 L-LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFH 155 (377)
Q Consensus 77 ~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~ 155 (377)
. .+.|++++.|+...... .+.......+.+.+.+.+|.+++.|+...+.+.+.+ .+.+++.++|||+|...+.
T Consensus 101 ~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~ 174 (365)
T cd03807 101 LAGVPPVIWGIRHSDLDLG-----KKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIG-YPPKKIVVIPNGVDTERFS 174 (365)
T ss_pred hcCCCcEEEEecCCccccc-----chhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcC-CChhheeEeCCCcCHHhcC
Confidence 4 68899999998764422 223344556777888899999999999999998864 3667899999999988776
Q ss_pred CccCchHH-HHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhc-----CCCE
Q 017114 156 PRFRSSEM-RWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFT-----GMPA 225 (377)
Q Consensus 156 ~~~~~~~~-~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~-----~~~v 225 (377)
+....... +.++. .+++.+.++++|++.+.||++.++++++.+ ++++++++|.++..+..+.... ..++
T Consensus 175 ~~~~~~~~~~~~~~-~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v 253 (365)
T cd03807 175 PDLDARARLREELG-LPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKV 253 (365)
T ss_pred CcccchHHHHHhcC-CCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceE
Confidence 55333222 22222 235678899999999999999999999776 5799999998876665555443 2368
Q ss_pred EEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHH
Q 017114 226 VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 305 (377)
Q Consensus 226 ~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i 305 (377)
.+.|.. +++..+|+.||++++|+..|++|++++|||+||+|||+++.++..+++ .+ +|++++++|+++++++|
T Consensus 254 ~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~---~~--~g~~~~~~~~~~l~~~i 326 (365)
T cd03807 254 ILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAELV---GD--TGFLVPPGDPEALAEAI 326 (365)
T ss_pred EEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChHHHh---hc--CCEEeCCCCHHHHHHHH
Confidence 889865 789999999999999999999999999999999999999999999998 45 88999999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 017114 306 EPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~ 344 (377)
.+++++++.+.++++++++.+ ++|+|+.+++++. .+|+
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~y~ 365 (365)
T cd03807 327 EALLADPALRQALGEAARERIEENFSIEAMVEAYE-ELYR 365 (365)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 999999999999999999998 5799999999998 5773
No 44
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=7e-37 Score=274.65 Aligned_cols=284 Identities=21% Similarity=0.268 Sum_probs=217.3
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccc------cccccc----hhhHHHHHHH
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPR------YTFSWL----VKPMWLVIKF 112 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------~~~~~~----~~~~~~~~~~ 112 (377)
....+.+.+++.++|+||+++.....+ ...+..++|+|++.|+........ ....+. .+.+..+++.
T Consensus 92 ~~~~l~~~~~~~~~D~v~~~~~~~~~~---~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 168 (397)
T TIGR03087 92 LARWVNALLAAEPVDAIVVFSSAMAQY---VTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYERA 168 (397)
T ss_pred HHHHHHHHHhhCCCCEEEEecccccee---ccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHH
Confidence 445667778889999999987533221 112456899999999854322111 001111 1223457888
Q ss_pred HHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHH
Q 017114 113 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFL 192 (377)
Q Consensus 113 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l 192 (377)
+++.+|.++++|+..++.+.+.++....++.++|||+|.+.|.+...... . ...++.+++|+|++.+.||++.+
T Consensus 169 ~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~-----~-~~~~~~~ilf~G~l~~~k~~~~l 242 (397)
T TIGR03087 169 IAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPN-----P-YPPGKRVLVFTGAMDYWPNIDAV 242 (397)
T ss_pred HHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccC-----C-CCCCCcEEEEEEecCCccCHHHH
Confidence 99999999999999999998876545678999999999988865422110 0 12345789999999999999987
Q ss_pred HH----HHH----hCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC-CcccchHHHHHH
Q 017114 193 KR----VMD----RLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAM 263 (377)
Q Consensus 193 ~~----a~~----~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~ 263 (377)
+. ++. ..|+++++|+|+|+. +.++++....+|.+.|+++ ++..+|+.||++|+||. .||+|++++|||
T Consensus 243 ~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~~~~V~~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAm 319 (397)
T TIGR03087 243 VWFAERVFPAVRARRPAAEFYIVGAKPS-PAVRALAALPGVTVTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAM 319 (397)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEECCCCh-HHHHHhccCCCeEEeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHH
Confidence 74 332 347899999999875 4566666667899999995 78999999999999997 589999999999
Q ss_pred hcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 017114 264 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQ 342 (377)
Q Consensus 264 a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l 342 (377)
|||+|||+|+.+.. .+. ..+++|+++. +|+++++++|.++++|++.++++++++++.+ ++|+|+..++++. .+
T Consensus 320 a~G~PVV~t~~~~~-~i~---~~~~~g~lv~-~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~-~~ 393 (397)
T TIGR03087 320 AMAKPVVASPEAAE-GID---ALPGAELLVA-ADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLD-AL 393 (397)
T ss_pred HcCCCEEecCcccc-ccc---ccCCcceEeC-CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HH
Confidence 99999999987532 233 3455788886 8999999999999999999999999999998 5899999999998 56
Q ss_pred HH
Q 017114 343 YN 344 (377)
Q Consensus 343 y~ 344 (377)
|+
T Consensus 394 l~ 395 (397)
T TIGR03087 394 LE 395 (397)
T ss_pred hc
Confidence 64
No 45
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=6e-36 Score=267.41 Aligned_cols=284 Identities=26% Similarity=0.380 Sum_probs=218.6
Q ss_pred HHHHHHhcCCCEEEeCCC-chhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecCh
Q 017114 47 IISEVARFKPDIIHASSP-GIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 125 (377)
Q Consensus 47 ~~~~i~~~~pDii~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 125 (377)
........+||+||+++. ..........++..++|++++.|+......................+...+.++.+++.|.
T Consensus 79 ~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 79 AWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred HHHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCH
Confidence 333445568999999984 3333444556677899999999987654332111100111122345677888999999997
Q ss_pred hHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CC
Q 017114 126 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE 201 (377)
Q Consensus 126 ~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~ 201 (377)
.........+ ...++.++|||+|.+.+.+...... +... ....++++++++|++.+.||++.++++++.+ ++
T Consensus 159 ~~~~~~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~ 234 (375)
T cd03821 159 QEAAEIRRLG--LKAPIAVIPNGVDIPPFAALPSRGR-RRKF-PILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPD 234 (375)
T ss_pred HHHHHHHhhC--CcccEEEcCCCcChhccCcchhhhh-hhhc-cCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCC
Confidence 7777666543 4578999999999988765432221 2222 2345778999999999999999999999877 47
Q ss_pred ceEEEEecCc--cHHHHHHhhc----CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC
Q 017114 202 ARIAFIGDGP--YREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 202 ~~l~i~G~g~--~~~~l~~~~~----~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
++++++|.+. ....++..+. ..+|.+.|+++++++..+|+.||++++||..|++|++++|||+||+|||+++.+
T Consensus 235 ~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~ 314 (375)
T cd03821 235 WHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV 314 (375)
T ss_pred eEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC
Confidence 9999999754 2333333222 347999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 017114 276 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 339 (377)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 339 (377)
+..+++ .+ ..|++++. +.++++++|.+++++++.++.+++++++.+ ++|+|+.++++++
T Consensus 315 ~~~~~~---~~-~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 315 PWQELI---EY-GCGWVVDD-DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred CHHHHh---hc-CceEEeCC-ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999999 66 77887765 559999999999999999999999999996 7899999999875
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=2.7e-36 Score=268.23 Aligned_cols=272 Identities=25% Similarity=0.404 Sum_probs=223.0
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeE
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 121 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 121 (377)
.....+.+.+++.+||+||++++..........++..++|+++++|+.+...... .......|.++
T Consensus 83 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~--------------~~~~~~~d~ii 148 (359)
T cd03823 83 AVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQ--------------GLFKKGGDAVI 148 (359)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchh--------------hhhccCCCEEE
Confidence 3456778888999999999998755555555566778899999999865332111 11223349999
Q ss_pred ecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC-
Q 017114 122 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP- 200 (377)
Q Consensus 122 ~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~- 200 (377)
++|+...+.+.+.+. ...++.+++||+|...+.+... ....++++++++|++.+.||++.++++++.++
T Consensus 149 ~~s~~~~~~~~~~~~-~~~~~~vi~n~~~~~~~~~~~~---------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~ 218 (359)
T cd03823 149 APSRFLLDRYVANGL-FAEKISVIRNGIDLDRAKRPRR---------APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR 218 (359)
T ss_pred EeCHHHHHHHHHcCC-CccceEEecCCcChhhcccccc---------CCCCCceEEEEEecCccccCHHHHHHHHHHHHh
Confidence 999999999988765 3578999999999887765421 12356788999999999999999999999885
Q ss_pred -CceEEEEecCccHHHHHHhh-cCCCEEEccccCchhHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCCC
Q 017114 201 -EARIAFIGDGPYREELEKMF-TGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGI 277 (377)
Q Consensus 201 -~~~l~i~G~g~~~~~l~~~~-~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~ 277 (377)
+++++++|.++......... ...+|.+.|+++.+++..+|+.||++++||. .|++|++++|||+||+|||+++.++.
T Consensus 219 ~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 298 (359)
T cd03823 219 GDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGM 298 (359)
T ss_pred cCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCH
Confidence 89999999887655443322 2357999999999999999999999999997 79999999999999999999999999
Q ss_pred CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017114 278 PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 278 ~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~ 344 (377)
.+++ .++.+|++++++|++++++++.++++|++.++.+++++++..+. +.+++++. ++|+
T Consensus 299 ~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~ 358 (359)
T cd03823 299 AELV---RDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSI---EDQAEEYL-KLYR 358 (359)
T ss_pred HHHh---cCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhH---HHHHHHHH-HHhh
Confidence 9999 78889999999999999999999999999999999988776543 88888888 5775
No 47
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=3.5e-36 Score=268.39 Aligned_cols=292 Identities=27% Similarity=0.350 Sum_probs=221.7
Q ss_pred HHHHHHHhcCCCEEEeCCCchhHHHHHHHHHh-hCCCEEEEeccCCccccccc----cc------------------ccc
Q 017114 46 RIISEVARFKPDIIHASSPGIMVFGALIIAKL-LCVPIVMSYHTHVPVYIPRY----TF------------------SWL 102 (377)
Q Consensus 46 ~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~----~~------------------~~~ 102 (377)
.+.+.++..+||+||+|......+....+.+. .++|+|+++|+.++...... .. ...
T Consensus 42 ~~~~~~~~~~~diih~~~~~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (365)
T cd03825 42 ALISKIEIINADIVHLHWIHGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLS 121 (365)
T ss_pred hhhhChhcccCCEEEEEccccCccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHH
Confidence 45566788899999998743332222222232 49999999999754321100 00 001
Q ss_pred hhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeec
Q 017114 103 VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR 182 (377)
Q Consensus 103 ~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 182 (377)
..............++.++++|+...+.+.+.+..+..++.++|||+|.+.+.+... ...+..... +.+..++++.|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~-~~~~~~~~~-~~~~~~i~~~~~ 199 (365)
T cd03825 122 RWIWRRKRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDK-REARKRLGL-PADKKIILFGAV 199 (365)
T ss_pred HHHHHHHHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcH-HHHHHHhCC-CCCCeEEEEEec
Confidence 111112222233567889999999999998877566789999999999988765432 233333332 344566666666
Q ss_pred ccc--cccHHHHHHHHHhC-----CCceEEEEecCccHHHHHHhhcCCCEEEccccC-chhHHHHHhcCCEEEeccCCcc
Q 017114 183 LGV--EKSLDFLKRVMDRL-----PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQAYASGDVFVMPSESET 254 (377)
Q Consensus 183 ~~~--~k~~~~l~~a~~~l-----~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~-~~~~~~~~~~adi~v~ps~~e~ 254 (377)
... .||++.++++++.+ ++++++++|+++..... ....++.+.|+++ .+++..+|+.||++++||..|+
T Consensus 200 ~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~ 276 (365)
T cd03825 200 GGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP---DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQEN 276 (365)
T ss_pred CCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc---cCCCceEecCCcCCHHHHHHHHHhCCEEEecccccc
Confidence 654 89999999999876 46899999987654332 2245799999998 6789999999999999999999
Q ss_pred cchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHH
Q 017114 255 LGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRA 333 (377)
Q Consensus 255 ~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~ 333 (377)
+|++++|||+||+|||+++.++..+++ .++.+|++++..|++++++++.+++++++.+.++++++++.+ ++|||+.
T Consensus 277 ~g~~~~Eam~~g~PvI~~~~~~~~e~~---~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 353 (365)
T cd03825 277 FPNTAIEALACGTPVVAFDVGGIPDIV---DHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRV 353 (365)
T ss_pred ccHHHHHHHhcCCCEEEecCCCChhhe---eCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999 778899999999999999999999999999999999999988 5799999
Q ss_pred HHHHHHHHHHHHH
Q 017114 334 ATRTIRNEQYNAA 346 (377)
Q Consensus 334 ~~~~~~~~ly~~~ 346 (377)
+++++. .+|+++
T Consensus 354 ~~~~~~-~~y~~~ 365 (365)
T cd03825 354 QAKRYL-SLYEEL 365 (365)
T ss_pred HHHHHH-HHHhhC
Confidence 999999 688763
No 48
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=1.8e-36 Score=270.08 Aligned_cols=271 Identities=19% Similarity=0.294 Sum_probs=205.0
Q ss_pred HHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHH
Q 017114 51 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 130 (377)
Q Consensus 51 i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 130 (377)
+...+||+||+|++....+ ....+..++|+|++.|....... ...+.+.+..++.+|.+++.+...
T Consensus 81 ~~~~~~Dvv~~h~~~~~~~--~~~~~~~~~~~i~~~H~~~~~~~---------~~~~~~~~~~~~~~d~~i~~~~~~--- 146 (372)
T cd03792 81 LLDLDADVVVIHDPQPLAL--PLFKKKRGRPWIWRCHIDLSSPN---------RRVWDFLQPYIEDYDAAVFHLPEY--- 146 (372)
T ss_pred cccCCCCEEEECCCCchhH--HHhhhcCCCeEEEEeeeecCCCc---------HHHHHHHHHHHHhCCEEeecHHHh---
Confidence 3467999999998764332 22333348999999997543211 122334566778899999888322
Q ss_pred HHHhcccCCCcEEEecCCCCCCCC-CCccCc---hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCc
Q 017114 131 LEAARVTAANKIRIWKKGVDSESF-HPRFRS---SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEA 202 (377)
Q Consensus 131 ~~~~~~~~~~~i~~i~~gv~~~~~-~~~~~~---~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~ 202 (377)
. ..+ .+..++ ++|||+|.... ...... ...+.++. ..+++++++++||+.+.||++.+++|++.+ +++
T Consensus 147 ~-~~~-~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~ 222 (372)
T cd03792 147 V-PPQ-VPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYG-IDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDP 222 (372)
T ss_pred c-CCC-CCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhC-CCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCC
Confidence 2 222 234455 99999997532 111111 12333333 245778999999999999999999998765 679
Q ss_pred eEEEEecCccH-----HHHHHhh----cCCCEEEcccc--CchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 203 RIAFIGDGPYR-----EELEKMF----TGMPAVFTGML--LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 203 ~l~i~G~g~~~-----~~l~~~~----~~~~v~~~g~~--~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
+|+++|+|+.. +.++++. ...+|.+.|.. +.+++..+|+.||++++||..|+||++++|||+||+|||+
T Consensus 223 ~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~ 302 (372)
T cd03792 223 QLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIA 302 (372)
T ss_pred EEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEE
Confidence 99999987531 1222222 23468898886 7899999999999999999999999999999999999999
Q ss_pred ecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 017114 272 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~ 345 (377)
++.++..+++ .++.+|++++ +.++++++|.+++++++.+++|++++++.+ ++|+|+.+++++. .+|+.
T Consensus 303 s~~~~~~~~i---~~~~~g~~~~--~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~-~~~~~ 371 (372)
T cd03792 303 GPVGGIPLQI---EDGETGFLVD--TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYL-YLISK 371 (372)
T ss_pred cCCCCchhhc---ccCCceEEeC--CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHh
Confidence 9999999999 8889999887 567899999999999999999999999987 6899999999999 68875
No 49
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=1.1e-35 Score=262.91 Aligned_cols=306 Identities=25% Similarity=0.371 Sum_probs=233.5
Q ss_pred CCcEEEEEeeCCCCCc---cccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHh
Q 017114 1 MGDEVMVVTTHEGVPQ---EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKL 77 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~ 77 (377)
+||+|++++....... ...++....... .........+.....+.+.+++.+||+|+++++.... +.....
T Consensus 29 ~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~---~~~~~~ 102 (348)
T cd03820 29 KGHEVTIISLDKGEPPFYELDPKIKVIDLGD---KRDSKLLARFKKLRRLRKLLKNNKPDVVISFLTSLLT---FLASLG 102 (348)
T ss_pred CCCeEEEEecCCCCCCccccCCccceeeccc---ccccchhccccchHHHHHhhcccCCCEEEEcCchHHH---HHHHHh
Confidence 5999999998765311 122222222221 1111223345566788889999999999999866222 222333
Q ss_pred hC-CCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCC
Q 017114 78 LC-VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHP 156 (377)
Q Consensus 78 ~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~ 156 (377)
.+ +|++.+.|+........ .......+..++.+|.+++.|+....... .....++.++||+++...+.+
T Consensus 103 ~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~---~~~~~~~~vi~~~~~~~~~~~ 172 (348)
T cd03820 103 LKIVKLIVSEHNSPDAYKKR-------LRRLLLRRLLYRRADAVVVLTEEDRALYY---KKFNKNVVVIPNPLPFPPEEP 172 (348)
T ss_pred hccccEEEecCCCccchhhh-------hHHHHHHHHHHhcCCEEEEeCHHHHHHhh---ccCCCCeEEecCCcChhhccc
Confidence 44 49999999865432111 11112478889999999999999872222 235678999999999876544
Q ss_pred ccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhcC----CCEEEc
Q 017114 157 RFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG----MPAVFT 228 (377)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~ 228 (377)
. ...++..++++|++.+.||++.++++++.+ ++++++++|.++..+.+.+.+.+ .+|.+.
T Consensus 173 ~------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~ 240 (348)
T cd03820 173 S------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILL 240 (348)
T ss_pred c------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEc
Confidence 3 134678899999999999999999999876 68999999999888777665543 358899
Q ss_pred cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC-CCccccccCCCCeeEEeCCCCHHHHHHHHHH
Q 017114 229 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG-IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 307 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 307 (377)
|. .+++..+|++||++++||..|++|++++|||++|+|||+++.++ ..+++ .++.+|+++++.|+++++++|.+
T Consensus 241 g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~i~~ 315 (348)
T cd03820 241 GF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEII---EDGVNGLLVPNGDVEALAEALLR 315 (348)
T ss_pred CC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHhhh---ccCcceEEeCCCCHHHHHHHHHH
Confidence 98 48999999999999999999999999999999999999998764 55666 55669999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 308 LLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
+++|++.++++++++++.+++|+|+++++++.
T Consensus 316 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 316 LMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 99999999999999988889999999999875
No 50
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=3.3e-36 Score=266.67 Aligned_cols=276 Identities=20% Similarity=0.189 Sum_probs=214.4
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCE--EEEeccCCcccccccccccchhhHHHHHHHHHhcCCe
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPI--VMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 119 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~--i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 119 (377)
....++.+.+++.+||+||++++... +.+..+++..+.|+ +.+.|...... ... .. ..++.+|.
T Consensus 71 ~~~~~l~~~l~~~~~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~----~~--~~~~~~d~ 136 (359)
T PRK09922 71 KHVYNFSKWLKETQPDIVICIDVISC-LYANKARKKSGKQFKIFSWPHFSLDHK-------KHA----EC--KKITCADY 136 (359)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCHHHH-HHHHHHHHHhCCCCeEEEEecCccccc-------chh----hh--hhhhcCCE
Confidence 33567889999999999999985433 33344556666654 44444322110 000 01 11378999
Q ss_pred eEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccc--ccccHHHHHHHHH
Q 017114 120 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG--VEKSLDFLKRVMD 197 (377)
Q Consensus 120 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~--~~k~~~~l~~a~~ 197 (377)
++++|+..++.+.+.+ .+.+++.++|||+|.+.+..... ...++++++++|++. +.||++.+++++.
T Consensus 137 ~i~~S~~~~~~~~~~~-~~~~ki~vi~N~id~~~~~~~~~----------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~ 205 (359)
T PRK09922 137 HLAISSGIKEQMMARG-ISAQRISVIYNPVEIKTIIIPPP----------ERDKPAVFLYVGRLKFEGQKNVKELFDGLS 205 (359)
T ss_pred EEEcCHHHHHHHHHcC-CCHHHEEEEcCCCCHHHccCCCc----------ccCCCcEEEEEEEEecccCcCHHHHHHHHH
Confidence 9999999999998764 46678999999999654432111 123567899999986 4599999999998
Q ss_pred hC-CCceEEEEecCccHHHHHHhhcC----CCEEEccccCc--hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeE
Q 017114 198 RL-PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLG--EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 198 ~l-~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
.+ ++++++++|+|+..+.+++.+++ .+|.|.|+++. +++..+|+.+|++++||..|+||++++||||||+|||
T Consensus 206 ~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv 285 (359)
T PRK09922 206 QTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCI 285 (359)
T ss_pred hhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEE
Confidence 87 47999999999988888887763 36999999854 7889999999999999999999999999999999999
Q ss_pred Eec-CCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 017114 271 GVR-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 348 (377)
Q Consensus 271 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~ 348 (377)
+++ .++..|++ .++.+|++++++|+++++++|.++++|++.+ ......+.+++|+.+...+++. .+|..+++
T Consensus 286 ~s~~~~g~~eiv---~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 358 (359)
T PRK09922 286 SSDCMSGPRDII---KPGLNGELYTPGNIDEFVGKLNKVISGEVKY--QHDAIPNSIERFYEVLYFKNLN-NALFSKLQ 358 (359)
T ss_pred EeCCCCChHHHc---cCCCceEEECCCCHHHHHHHHHHHHhCcccC--CHHHHHHHHHHhhHHHHHHHHH-HHHHHHhc
Confidence 999 89999999 8899999999999999999999999998754 1233344457889999999998 68877653
No 51
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=2.2e-35 Score=263.24 Aligned_cols=315 Identities=23% Similarity=0.297 Sum_probs=230.4
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCch-h----HHHHHHHH
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGI-M----VFGALIIA 75 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~-~----~~~~~~~~ 75 (377)
+||+|++++................. .............+.+.+++.+||+||++.+.. . ........
T Consensus 29 ~g~~v~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T cd03822 29 RGPDVLVVSVAALYPSLLYGGEQEVV-------RVIVLDNPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLL 101 (366)
T ss_pred cCCeEEEEEeecccCcccCCCcccce-------eeeecCCchhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHH
Confidence 58999999876643322111110000 001112233445677888999999999976321 1 11112223
Q ss_pred HhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecC-hhHHHHHHHhcccCCCcEEEecCCCCCCCC
Q 017114 76 KLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS-VAIGKDLEAARVTAANKIRIWKKGVDSESF 154 (377)
Q Consensus 76 ~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s-~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~ 154 (377)
+..++|+|+++|+..+.. .........+.+++.+|.++++| +...+.+...+ .+++.++|||++...+
T Consensus 102 ~~~~~~~i~~~h~~~~~~--------~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~---~~~~~~i~~~~~~~~~ 170 (366)
T cd03822 102 RGLGIPVVVTLHTVLLHE--------PRPGDRALLRLLLRRADAVIVMSSELLRALLLRAY---PEKIAVIPHGVPDPPA 170 (366)
T ss_pred hhcCCCEEEEEecCCccc--------cchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcC---CCcEEEeCCCCcCccc
Confidence 447899999999972111 11223356678889999999996 33333333221 4689999999997766
Q ss_pred CCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHH---------HHHhhc
Q 017114 155 HPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREE---------LEKMFT 221 (377)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~---------l~~~~~ 221 (377)
.+.... .......++++++|+|++.+.||++.++++++.+ ++++++++|.+..... +++...
T Consensus 171 ~~~~~~-----~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~ 245 (366)
T cd03822 171 EPPESL-----KALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGL 245 (366)
T ss_pred CCchhh-----HhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCC
Confidence 543211 1111345678999999999999999999999766 5899999997653322 223333
Q ss_pred CCCEEEccc-cCchhHHHHHhcCCEEEeccCCc--ccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCH
Q 017114 222 GMPAVFTGM-LLGEELSQAYASGDVFVMPSESE--TLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDL 298 (377)
Q Consensus 222 ~~~v~~~g~-~~~~~~~~~~~~adi~v~ps~~e--~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 298 (377)
..+|.+.|. ++.+++..+|+.||++++||..| ++|++++|||++|+|||+++.++ .+.+ .++.+|+++++.|+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i---~~~~~g~~~~~~d~ 321 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEV---LDGGTGLLVPPGDP 321 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhee---eeCCCcEEEcCCCH
Confidence 447999977 99999999999999999999999 99999999999999999999999 6666 67788999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017114 299 DDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 343 (377)
Q Consensus 299 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly 343 (377)
++++++|..+++|++.+.++++++++.+++|+|+.+++++. .+|
T Consensus 322 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~ 365 (366)
T cd03822 322 AALAEAIRRLLADPELAQALRARAREYARAMSWERVAERYL-RLL 365 (366)
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHHHHHH-HHh
Confidence 99999999999999999999999999997899999999998 466
No 52
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=4.3e-36 Score=269.40 Aligned_cols=316 Identities=17% Similarity=0.190 Sum_probs=225.5
Q ss_pred CcEEEEEeeCCCCCc--------------cccCceeecc----cCCCCCccccccccccchHHHHHHH---HhcCCCEEE
Q 017114 2 GDEVMVVTTHEGVPQ--------------EFYGAKLIGS----RSFPCPWYQKVPLSLALSPRIISEV---ARFKPDIIH 60 (377)
Q Consensus 2 G~~V~v~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~pDii~ 60 (377)
||+|+|+|+...... ...++.+..+ ..++...+.++.....+...+...+ .+.+|||++
T Consensus 33 ~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i 112 (419)
T cd03806 33 NNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTLLGQALGSMILGLEALLKLVPDIFI 112 (419)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceeeHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 799999998754321 1222332232 2333334444444444444443333 345899998
Q ss_pred eCCCchhHHHHHHHHHhhCCCEEEEeccCCc----ccccc---------------------cccccchhhHHHHHHHHHh
Q 017114 61 ASSPGIMVFGALIIAKLLCVPIVMSYHTHVP----VYIPR---------------------YTFSWLVKPMWLVIKFLHR 115 (377)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~----~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 115 (377)
.+....+.++. .....++|++..+| +| +.... ......++.+..++++.++
T Consensus 113 ~~~g~~~~~~~--~~~~~~~~~i~y~h--~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~ 188 (419)
T cd03806 113 DTMGYPFTYPL--VRLLGGCPVGAYVH--YPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLFAFLYGLAGS 188 (419)
T ss_pred EcCCcccHHHH--HHHhcCCeEEEEec--CCcchHHHHHHHhhccccccCccchhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 88744443332 22334789999999 44 21100 0001112223357788899
Q ss_pred cCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHH
Q 017114 116 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRV 195 (377)
Q Consensus 116 ~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a 195 (377)
.+|.++++|++..+.+.+.+.. .+++.+++||+|.+.+.+.... ...+...++|+|++.+.||++.+++|
T Consensus 189 ~aD~ii~~S~~~~~~~~~~~~~-~~~~~vi~~gvd~~~~~~~~~~---------~~~~~~~il~vgr~~~~K~~~~li~A 258 (419)
T cd03806 189 FADVVMVNSTWTRNHIRSLWKR-NTKPSIVYPPCDVEELLKLPLD---------EKTRENQILSIAQFRPEKNHPLQLRA 258 (419)
T ss_pred cCCEEEECCHHHHHHHHHHhCc-CCCcEEEcCCCCHHHhcccccc---------cccCCcEEEEEEeecCCCCHHHHHHH
Confidence 9999999999999999887652 3588999999998776543210 12356789999999999999999999
Q ss_pred HHhC----C-----CceEEEEecCc------cHHHHHHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccCCcccc
Q 017114 196 MDRL----P-----EARIAFIGDGP------YREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 256 (377)
Q Consensus 196 ~~~l----~-----~~~l~i~G~g~------~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~ 256 (377)
+..+ + +++++|+|++. +.+.+++++++ .+|+|+|.++++++..+|+.||++++|+..|+||
T Consensus 259 ~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fg 338 (419)
T cd03806 259 FAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFG 338 (419)
T ss_pred HHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcc
Confidence 9876 3 48999999763 34556666543 4799999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCeEEecCCC-CCccccccC---CCCeeEEeCCCCHHHHHHHHHHHhhCHH-HHHHHHHHHHHHHHhcCH
Q 017114 257 LVVLEAMSSGIPVVGVRAGG-IPDIIPEDQ---DGKIGYLFNPGDLDDCLSKLEPLLYNQE-LRETMGQAARQEMEKYDW 331 (377)
Q Consensus 257 ~~~~Ea~a~G~PvI~~~~~~-~~~~~~~~~---~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~~~~s~ 331 (377)
++++||||||+|||+++.++ ..+++ . ++.+|++++ |+++++++|.+++++++ .++.+++++++..++|++
T Consensus 339 i~~lEAMa~G~pvIa~~~ggp~~~iv---~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~ 413 (419)
T cd03806 339 IGVVEYMAAGLIPLAHASGGPLLDIV---VPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSD 413 (419)
T ss_pred cHHHHHHHcCCcEEEEcCCCCchhee---eccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCH
Confidence 99999999999999999866 45777 5 788999975 99999999999998654 455555555555578999
Q ss_pred HHHHH
Q 017114 332 RAATR 336 (377)
Q Consensus 332 ~~~~~ 336 (377)
+.+.+
T Consensus 414 ~~f~~ 418 (419)
T cd03806 414 EEFER 418 (419)
T ss_pred HHhcc
Confidence 98754
No 53
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.2e-35 Score=274.76 Aligned_cols=294 Identities=21% Similarity=0.252 Sum_probs=215.1
Q ss_pred chHHHHHHH-Hh--cCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccc-----cchhhH--HHHHHH
Q 017114 43 LSPRIISEV-AR--FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFS-----WLVKPM--WLVIKF 112 (377)
Q Consensus 43 ~~~~~~~~i-~~--~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~-----~~~~~~--~~~~~~ 112 (377)
+...+.+.+ ++ .+||+||+|.+. .++++..+++..|+|++.+.|............. ...... ...+..
T Consensus 393 f~~~~~~~~~~~~~~~PDlIHaHYwd-sg~vA~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~ 471 (815)
T PLN00142 393 FAEDAASEILAELQGKPDLIIGNYSD-GNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLI 471 (815)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCcc-HHHHHHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHH
Confidence 334455444 22 359999999754 3466778999999999999997542221111100 000111 124677
Q ss_pred HHhcCCeeEecChhHHHH-------HHHhc------------cc--CCCcEEEecCCCCCCCCCCccCchH---------
Q 017114 113 LHRAADLTLVPSVAIGKD-------LEAAR------------VT--AANKIRIWKKGVDSESFHPRFRSSE--------- 162 (377)
Q Consensus 113 ~~~~~d~ii~~s~~~~~~-------~~~~~------------~~--~~~~i~~i~~gv~~~~~~~~~~~~~--------- 162 (377)
+...||.||+.+...... +..+. ++ ...++.++|+|+|...|.|......
T Consensus 472 a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I 551 (815)
T PLN00142 472 AMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSI 551 (815)
T ss_pred HHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccc
Confidence 888999999988666531 22211 11 2458899999999998875432211
Q ss_pred ---------HHHHhhC-CCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCc------cH------HHH
Q 017114 163 ---------MRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGP------YR------EEL 216 (377)
Q Consensus 163 ---------~~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~------~~------~~l 216 (377)
....+.. ...++++|+++||+.+.||++.+++|+..+ ++++|+|+|++. .. +.+
T Consensus 552 ~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L 631 (815)
T PLN00142 552 EELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKM 631 (815)
T ss_pred hhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHH
Confidence 0112221 234667899999999999999999999865 468999999762 11 224
Q ss_pred HHhhcC----CCEEEccccC----chhHHHHHh-cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC
Q 017114 217 EKMFTG----MPAVFTGMLL----GEELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG 287 (377)
Q Consensus 217 ~~~~~~----~~v~~~g~~~----~~~~~~~~~-~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~ 287 (377)
.+++++ .+|.|.|... .+++..+++ .+|++|+||.+|+||++++||||||+|||+|+.||..|++ .++
T Consensus 632 ~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV---~dG 708 (815)
T PLN00142 632 HSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEII---VDG 708 (815)
T ss_pred HHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHh---cCC
Confidence 444443 3688988643 356777776 4799999999999999999999999999999999999999 899
Q ss_pred CeeEEeCCCCHHHHHHHHHHH----hhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Q 017114 288 KIGYLFNPGDLDDCLSKLEPL----LYNQELRETMGQAARQEM-EKYDWRAATRTIRN 340 (377)
Q Consensus 288 ~~g~~~~~~~~~~l~~~i~~~----~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~ 340 (377)
.+|+++++.|+++++++|.++ +.|++.+++++++|++.+ ++|||+.+++++++
T Consensus 709 ~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~ 766 (815)
T PLN00142 709 VSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLT 766 (815)
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999998765 469999999999999988 68999999999985
No 54
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=1.3e-35 Score=268.89 Aligned_cols=278 Identities=18% Similarity=0.196 Sum_probs=211.6
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCccccccccc-ccchhhHHHHHHHHHhcCCeeEec
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF-SWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
..+.+.+...++||+|++.+.....+ ++.....+|+++.+|+........... .+....+. ......+.+|.++++
T Consensus 201 ~~f~~~L~~~~~di~i~dr~~~~~~~--~~~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~-~~~~~~~~~D~iI~~ 277 (500)
T TIGR02918 201 AYFLKQLNLTKKDIIILDRSTGIGQA--VLENKGPAKLGVVVHAEHFSESATNETYILWNNYYE-YQFSNADYIDFFITA 277 (500)
T ss_pred HHHHHHHhCCCCCEEEEcCCcccchH--HHhcCCCceEEEEEChhhhcCccCcchhHHHHHHHH-HHHhchhhCCEEEEC
Confidence 34445455668999999876543322 244556789999999743211111100 10111111 112234678999999
Q ss_pred ChhHHHHHHHhcc---cCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC-
Q 017114 124 SVAIGKDLEAARV---TAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL- 199 (377)
Q Consensus 124 s~~~~~~~~~~~~---~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l- 199 (377)
|+..++.+.+.+. ....++.++|||++...+.+. ....+..|+++||+.+.||++.+++|+..+
T Consensus 278 S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~------------~~r~~~~il~vGrl~~~Kg~~~li~A~~~l~ 345 (500)
T TIGR02918 278 TDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE------------QERKPFSIITASRLAKEKHIDWLVKAVVKAK 345 (500)
T ss_pred CHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc------------cccCCeEEEEEeccccccCHHHHHHHHHHHH
Confidence 9998888776542 235789999999865443321 122456899999999999999999999754
Q ss_pred ---CCceEEEEecCccHHHHHHhhcCC----CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 200 ---PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 200 ---~~~~l~i~G~g~~~~~l~~~~~~~----~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
|+++|.|+|+|+..+.+++++++. +|.+.|+. ++.++|+.||++|+||..||||++++||||||+|||++
T Consensus 346 ~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~ 422 (500)
T TIGR02918 346 KSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGF 422 (500)
T ss_pred hhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEe
Confidence 789999999999888888876543 58999975 68899999999999999999999999999999999999
Q ss_pred cCC-CCCccccccCCCCeeEEeCCC----C----HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017114 273 RAG-GIPDIIPEDQDGKIGYLFNPG----D----LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 343 (377)
Q Consensus 273 ~~~-~~~~~~~~~~~~~~g~~~~~~----~----~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly 343 (377)
+.+ |.++++ .++.+|++++++ | +++++++|.++++ ++.+++|++++++.+++|+|+.+++++. .++
T Consensus 423 dv~~G~~eiI---~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~~fs~~~v~~~w~-~ll 497 (500)
T TIGR02918 423 DVNYGNPTFI---EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAEGFLTANIIEKWK-KLV 497 (500)
T ss_pred cCCCCCHHHc---cCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHH
Confidence 986 889999 899999999842 3 8899999999994 5678999999999999999999999998 577
Q ss_pred HH
Q 017114 344 NA 345 (377)
Q Consensus 344 ~~ 345 (377)
++
T Consensus 498 ~~ 499 (500)
T TIGR02918 498 RE 499 (500)
T ss_pred hh
Confidence 65
No 55
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=2.8e-35 Score=259.43 Aligned_cols=294 Identities=18% Similarity=0.261 Sum_probs=221.7
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV 80 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~ 80 (377)
+||+|++++......... ....... ...................+.+.+++.+||+||+|+.....+ .++..++
T Consensus 35 ~g~~V~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~----~~~~~~~ 108 (335)
T cd03802 35 RGHEVTLFASGDSKTAAP-LVPVVPE-PLRLDAPGRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP----FARPLPV 108 (335)
T ss_pred cCceEEEEecCCCCcccc-eeeccCC-CcccccchhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh----hhcccCC
Confidence 599999999876532211 0111100 000000111122244456778888999999999998654433 5677889
Q ss_pred CEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCc
Q 017114 81 PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS 160 (377)
Q Consensus 81 ~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~ 160 (377)
|++++.|+........ ........+.++++|+...+.+... .++.++|||+|.+.+.+.
T Consensus 109 ~~v~~~h~~~~~~~~~-------------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~vi~ngvd~~~~~~~--- 167 (335)
T cd03802 109 PVVTTLHGPPDPELLK-------------LYYAARPDVPFVSISDAQRRPWPPL-----PWVATVHNGIDLDDYPFR--- 167 (335)
T ss_pred CEEEEecCCCCcccch-------------HHHhhCcCCeEEEecHHHHhhcccc-----cccEEecCCcChhhCCCC---
Confidence 9999999875432111 2344567888999999888776543 688999999999887652
Q ss_pred hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhc-----CCCEEEccccCchh
Q 017114 161 SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEE 235 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~-----~~~v~~~g~~~~~~ 235 (377)
..++..++|+|++.+.||++.++++++.. +++++++|.|+..+.+..... ..+|.+.|++++++
T Consensus 168 ----------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~~-~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~ 236 (335)
T cd03802 168 ----------GPKGDYLLFLGRISPEKGPHLAIRAARRA-GIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAE 236 (335)
T ss_pred ----------CCCCCEEEEEEeeccccCHHHHHHHHHhc-CCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHH
Confidence 23556899999999999999999998875 799999998876555443322 35799999999999
Q ss_pred HHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHH
Q 017114 236 LSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 314 (377)
Q Consensus 236 ~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~ 314 (377)
+..+|+.+|++++||. .|++|++++||||||+|||+++.++..|++ .++.+|+++++ +++++++|.++.+.+
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i---~~~~~g~l~~~--~~~l~~~l~~l~~~~-- 309 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVV---EDGVTGFLVDS--VEELAAAVARADRLD-- 309 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhhe---eCCCcEEEeCC--HHHHHHHHHHHhccH--
Confidence 9999999999999997 599999999999999999999999999999 78889999985 999999999986543
Q ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 017114 315 RETMGQAARQEM-EKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 315 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~ 344 (377)
.+++++.+ ++|+|+.+++++. .+|+
T Consensus 310 ----~~~~~~~~~~~~s~~~~~~~~~-~~y~ 335 (335)
T cd03802 310 ----RAACRRRAERRFSAARMVDDYL-ALYR 335 (335)
T ss_pred ----HHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 23455665 6899999999999 5774
No 56
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=2.7e-35 Score=263.97 Aligned_cols=266 Identities=24% Similarity=0.315 Sum_probs=217.2
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHhhCCC-EEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHH
Q 017114 54 FKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 132 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 132 (377)
.++|++|++......+....+.+..+.+ +|.+.|+.... ... .......+.+.+++.+|.++++|+...+.+.
T Consensus 126 ~~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg~d~~--~~~----~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~ 199 (407)
T cd04946 126 GQGTVFYSYWLHETAYALALLKKEYLRKRVISRAHGYDLY--EDR----YPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQ 199 (407)
T ss_pred cCceEEEEecCchHHHHHHHHHHhcCCceEEEEeccchhh--hhh----ccccchHHHHHHHhcCCEEEECCHHHHHHHH
Confidence 4567888876555555555555666655 89999975321 111 1111223456678999999999999999999
Q ss_pred HhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----C--CceEEE
Q 017114 133 AARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P--EARIAF 206 (377)
Q Consensus 133 ~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~--~~~l~i 206 (377)
+.++...+++.+++||++...+.+.. ...+.+.++++|++.+.||++.+++++..+ | ++++++
T Consensus 200 ~~~~~~~~ki~vi~~gv~~~~~~~~~-----------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~i 268 (407)
T cd04946 200 KRYPAYKEKIKVSYLGVSDPGIISKP-----------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTH 268 (407)
T ss_pred HHCCCccccEEEEECCcccccccCCC-----------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEE
Confidence 88876778999999999876654321 234678899999999999999999999876 3 466788
Q ss_pred EecCccHHHHHHhhcC----CCEEEccccCchhHHHHHhc--CCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcc
Q 017114 207 IGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 280 (377)
Q Consensus 207 ~G~g~~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~ 280 (377)
+|+|+..+.+++++.. .+|.|.|+++++++..+|+. +|++++||..||+|++++|||++|+|||+|+.++.+|+
T Consensus 269 iG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~ 348 (407)
T cd04946 269 IGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEI 348 (407)
T ss_pred EeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHH
Confidence 9999988888877642 36999999999999999976 78899999999999999999999999999999999999
Q ss_pred ccccCCCCeeEEeCC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 017114 281 IPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 339 (377)
Q Consensus 281 ~~~~~~~~~g~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 339 (377)
+ .++.+|+++++ +|+++++++|.++++|++.+.+|+++|++.+ ++|+|+...+++.
T Consensus 349 i---~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 349 V---DNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred h---cCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 9 88889999886 4899999999999999999999999999998 5899999998875
No 57
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.1e-34 Score=258.71 Aligned_cols=228 Identities=16% Similarity=0.238 Sum_probs=186.4
Q ss_pred HHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccccccc
Q 017114 109 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 188 (377)
Q Consensus 109 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 188 (377)
++.+..+.+|.+++.|++.++.+.+.+.. .+++.+++||+|...+...... ...++..++++|++.++||
T Consensus 213 l~~~~~~~ad~ii~nS~~t~~~l~~~~~~-~~~i~vvyp~vd~~~~~~~~~~---------~~~~~~~il~vGR~~~~Kg 282 (463)
T PLN02949 213 MYGLVGRCAHLAMVNSSWTKSHIEALWRI-PERIKRVYPPCDTSGLQALPLE---------RSEDPPYIISVAQFRPEKA 282 (463)
T ss_pred HHHHHcCCCCEEEECCHHHHHHHHHHcCC-CCCeEEEcCCCCHHHcccCCcc---------ccCCCCEEEEEEeeeccCC
Confidence 44555688999999999999999887653 3578899999987655321111 1234578999999999999
Q ss_pred HHHHHHHHHhC--------CCceEEEEecCcc------HHHHHHhhcC----CCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 189 LDFLKRVMDRL--------PEARIAFIGDGPY------REELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 189 ~~~l~~a~~~l--------~~~~l~i~G~g~~------~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
++.+++|+..+ ++++|+|+|+++. .+++++++.+ .+|.|.|+++.+++..+|+.||+++.|+
T Consensus 283 ~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s 362 (463)
T PLN02949 283 HALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSM 362 (463)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCC
Confidence 99999998753 5799999998632 2456666653 3699999999999999999999999999
Q ss_pred CCcccchHHHHHHhcCCCeEEecCCCCC-ccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVRAGGIP-DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEK 328 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 328 (377)
..|+||++++|||++|+|||+++.+|.. +++.++.++.+|++++ |+++++++|.++++ +++.+++|++++++.+++
T Consensus 363 ~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 363 IDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred ccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 6662222266898875 99999999999998 678889999999999988
Q ss_pred cCHHHHHHHHHHHHHHHHHHH
Q 017114 329 YDWRAATRTIRNEQYNAAIWF 349 (377)
Q Consensus 329 ~s~~~~~~~~~~~ly~~~~~~ 349 (377)
|||+.+.+++. ..++++++.
T Consensus 441 FS~e~~~~~~~-~~i~~l~~~ 460 (463)
T PLN02949 441 FSEQRFNEDFK-DAIRPILNS 460 (463)
T ss_pred cCHHHHHHHHH-HHHHHHHhh
Confidence 99999999999 578877653
No 58
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=7e-35 Score=258.14 Aligned_cols=313 Identities=28% Similarity=0.327 Sum_probs=235.8
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV 80 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~ 80 (377)
+||+|++++................ ....................+.+.+++.+||+|++++.....+...+..+. ++
T Consensus 28 ~g~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~-~~ 105 (353)
T cd03811 28 RGYDVTLVVLRDEGDYLELLPSNVK-LIPVRVLKLKSLRDLLAILRLRRLLRKEKPDVVISHLTTTPNVLALLAARL-GT 105 (353)
T ss_pred cCceEEEEEcCCCCccccccccchh-hhceeeeecccccchhHHHHHHHHHHhcCCCEEEEcCccchhHHHHHHhhc-CC
Confidence 5999999998765332111110000 000011111222334556788899999999999999861222333333333 89
Q ss_pred CEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCc
Q 017114 81 PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS 160 (377)
Q Consensus 81 ~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~ 160 (377)
|++++.|+............. ...+..++.+|.+++.|+...+.+.+.++.+..++.++|||++...+.+....
T Consensus 106 ~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 179 (353)
T cd03811 106 KLIVWEHNSLSLELKRKLRLL------LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEE 179 (353)
T ss_pred ceEEEEcCcchhhhccchhHH------HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccch
Confidence 999999998755432221111 46788889999999999999999999987556899999999998877654332
Q ss_pred hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC----CceEEEEecCccHHHHHHhhcC----CCEEEccccC
Q 017114 161 SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP----EARIAFIGDGPYREELEKMFTG----MPAVFTGMLL 232 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~----~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~~ 232 (377)
.. . .....++++++++|++.+.||++.++++++.+. +++++++|.++..+.+++.+.. .+|.+.|++
T Consensus 180 ~~---~-~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~- 254 (353)
T cd03811 180 PL---E-LGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQ- 254 (353)
T ss_pred hh---h-cCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEeccc-
Confidence 11 1 112456789999999999999999999999884 7999999998877777665543 369999997
Q ss_pred chhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHH---HHHHHHHh
Q 017114 233 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC---LSKLEPLL 309 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~~i~~~~ 309 (377)
+++..+++.||++++||..|++|++++|||++|+|||+++.++..+++ .++.+|+++++++.+++ .+++..+.
T Consensus 255 -~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i---~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 330 (353)
T cd03811 255 -SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPREIL---EDGENGLLVPVGDEAALAAAALALLDLL 330 (353)
T ss_pred -CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHh---cCCCceEEECCCCHHHHHHHHHHHHhcc
Confidence 678999999999999999999999999999999999999999999999 88999999999999998 77788888
Q ss_pred hCHHHHHHHHHHHHHHH-HhcC
Q 017114 310 YNQELRETMGQAARQEM-EKYD 330 (377)
Q Consensus 310 ~~~~~~~~~~~~~~~~~-~~~s 330 (377)
++++.+.++++++++.+ ++|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 331 LDPELRERLAAAARERVAREYS 352 (353)
T ss_pred CChHHHHHHHHHHHHHHHHHhc
Confidence 89999999998776665 5665
No 59
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=7.2e-35 Score=260.83 Aligned_cols=278 Identities=18% Similarity=0.142 Sum_probs=212.8
Q ss_pred ccccchHHHHHHHHhcCCCEEEeCCCchhHHH--HHHHHHhhCCCEEEEeccCCcccccccccccchhhHH-HHHHHHHh
Q 017114 39 LSLALSPRIISEVARFKPDIIHASSPGIMVFG--ALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMW-LVIKFLHR 115 (377)
Q Consensus 39 ~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 115 (377)
....-...+.+.+..++|||||+++|...++. +..++++.+ |+|.++|+.++.+...+...+...... .+.+++.+
T Consensus 418 ~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r 496 (794)
T PLN02501 418 RSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTR 496 (794)
T ss_pred ccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHH
Confidence 33455678999999999999999999888776 788888888 999999999887766655444444333 22223322
Q ss_pred c-CCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHH
Q 017114 116 A-ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 194 (377)
Q Consensus 116 ~-~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 194 (377)
. ||.++++|..+.+ + +...+.. .||||.+.|.+....... ..... ......++|+||+.+.||++.+++
T Consensus 497 ~hcD~VIaPS~atq~-L------~~~vI~n-VnGVDte~F~P~~r~~~~-r~lgi-~~~~kgiLfVGRLa~EKGld~LLe 566 (794)
T PLN02501 497 AYCHKVLRLSAATQD-L------PKSVICN-VHGVNPKFLKIGEKVAEE-RELGQ-QAFSKGAYFLGKMVWAKGYRELID 566 (794)
T ss_pred hhCCEEEcCCHHHHH-h------cccceee-cccccccccCCcchhHHH-HhcCC-ccccCceEEEEcccccCCHHHHHH
Confidence 2 8999999977763 3 1122222 279999999876442222 22221 122345899999999999999999
Q ss_pred HHHhC----CCceEEEEecCccHHHHHHhhcCC--CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCC
Q 017114 195 VMDRL----PEARIAFIGDGPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 268 (377)
Q Consensus 195 a~~~l----~~~~l~i~G~g~~~~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 268 (377)
|++.+ ++++++|+|+|+..+.+++.+.+. +|.|+|.. ++...+|+.+|++|+||..|+||++++||||||+|
T Consensus 567 Ala~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~--dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlP 644 (794)
T PLN02501 567 LLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGR--DHADDSLHGYKVFINPSISDVLCTATAEALAMGKF 644 (794)
T ss_pred HHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCC--CCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCC
Confidence 99764 689999999999999998887654 48888887 55668999999999999999999999999999999
Q ss_pred eEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017114 269 VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRN 340 (377)
Q Consensus 269 vI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 340 (377)
||+++.++.. ++ .++.+|+++ +|+++++++|.+++.++..+..+. ....+||+.+++++++
T Consensus 645 VVATd~pG~e-~V---~~g~nGll~--~D~EafAeAI~~LLsd~~~rl~~~-----a~~~~SWeAaadrLle 705 (794)
T PLN02501 645 VVCADHPSNE-FF---RSFPNCLTY--KTSEDFVAKVKEALANEPQPLTPE-----QRYNLSWEAATQRFME 705 (794)
T ss_pred EEEecCCCCc-eE---eecCCeEec--CCHHHHHHHHHHHHhCchhhhHHH-----HHhhCCHHHHHHHHHH
Confidence 9999998854 46 567777765 589999999999999876443322 1348999999999985
No 60
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=1e-34 Score=257.37 Aligned_cols=292 Identities=18% Similarity=0.175 Sum_probs=209.6
Q ss_pred cEEEEEeeCCCCC--c--cccCceeecccCCCCC-ccccccc-------cccchHHHHHH--HHhcCCCEEEeCCCchh-
Q 017114 3 DEVMVVTTHEGVP--Q--EFYGAKLIGSRSFPCP-WYQKVPL-------SLALSPRIISE--VARFKPDIIHASSPGIM- 67 (377)
Q Consensus 3 ~~V~v~~~~~~~~--~--~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~--i~~~~pDii~~~~~~~~- 67 (377)
++|+|+|..+... + ...++++.+.+..+.. ...+... ....+..+... .+..+||+||++++...
T Consensus 34 ~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~ 113 (371)
T PLN02275 34 FQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVP 113 (371)
T ss_pred ceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcH
Confidence 5899999865422 1 2334666666531111 1111111 00111222232 35689999999875433
Q ss_pred -HHHHHHHHHhhCCCEEEEeccCCcccc--cccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEE
Q 017114 68 -VFGALIIAKLLCVPIVMSYHTHVPVYI--PRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRI 144 (377)
Q Consensus 68 -~~~~~~~~~~~~~~~i~~~h~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~ 144 (377)
.+.+.++++..+.|+++++|+.+.... .........+...++++++++.+|.++++|+.+.+.+.+.++.+ +.+
T Consensus 114 ~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~---i~v 190 (371)
T PLN02275 114 TLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLCVTKAMQHELDQNWGIR---ATV 190 (371)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhcCCC---eEE
Confidence 234556777789999999998642111 11122334456678899999999999999999999998765432 889
Q ss_pred ecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC---------------------CCce
Q 017114 145 WKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---------------------PEAR 203 (377)
Q Consensus 145 i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l---------------------~~~~ 203 (377)
++|+. .+.|.+..... . ...+...+++++|++.+.||++.+++|+..+ |+++
T Consensus 191 i~n~~-~~~f~~~~~~~----~--~~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 263 (371)
T PLN02275 191 LYDQP-PEFFRPASLEI----R--LRPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLL 263 (371)
T ss_pred ECCCC-HHHcCcCCchh----c--ccCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeE
Confidence 99985 45554432211 0 1123445778899999999999999998754 6799
Q ss_pred EEEEecCccHHHHHHhhcCC---CEEEcc-ccCchhHHHHHhcCCEEEeccC---CcccchHHHHHHhcCCCeEEecCCC
Q 017114 204 IAFIGDGPYREELEKMFTGM---PAVFTG-MLLGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 204 l~i~G~g~~~~~l~~~~~~~---~v~~~g-~~~~~~~~~~~~~adi~v~ps~---~e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
|+|+|+|+..+++++.+++. ++.+.+ +++.+++..+|+.||++|+|+. .|++|++++||||||+|||+++.++
T Consensus 264 l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg 343 (371)
T PLN02275 264 FIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 343 (371)
T ss_pred EEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCC
Confidence 99999999999998887754 477755 7899999999999999998642 4889999999999999999999999
Q ss_pred CCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 277 IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 277 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.+|++ +++.+|++++ |+++++++|.+++
T Consensus 344 ~~eiv---~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 344 IGELV---KDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred hHHHc---cCCCCeEEEC--CHHHHHHHHHHhC
Confidence 99999 8999999997 7999999998764
No 61
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=6.8e-35 Score=237.53 Aligned_cols=327 Identities=23% Similarity=0.326 Sum_probs=242.2
Q ss_pred CCcEEEEEeeCCCCCc----cccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCch-hHHHHHHHH
Q 017114 1 MGDEVMVVTTHEGVPQ----EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGI-MVFGALIIA 75 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~-~~~~~~~~~ 75 (377)
+||.|.++|-.-+... ...+.+++..+....-.-.-++..+..+..++.++.+.+..+||.|++.. +.--+++.+
T Consensus 31 lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~ha 110 (426)
T KOG1111|consen 31 LGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHA 110 (426)
T ss_pred cCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCcccchhhhhhceEEEecCChHHHHHHHHHHHH
Confidence 5999999986544221 12233433333222211122233344456677888888999999998633 334467788
Q ss_pred HhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCC
Q 017114 76 KLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFH 155 (377)
Q Consensus 76 ~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~ 155 (377)
+..|.+++++-|..+....-.. ........+.+...|.+||+|...++...-++..++.++.+|||.++...|.
T Consensus 111 rtMGlktVfTdHSlfGfad~~s------i~~n~ll~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~ 184 (426)
T KOG1111|consen 111 RTMGLKTVFTDHSLFGFADIGS------ILTNKLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFT 184 (426)
T ss_pred HhcCceEEEeccccccccchhh------hhhcceeeeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccc
Confidence 8999999999998653321111 1111344567788999999999999887767777889999999999999999
Q ss_pred CccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCc----cHHHHHHhhcCCCEEE
Q 017114 156 PRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGP----YREELEKMFTGMPAVF 227 (377)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~----~~~~l~~~~~~~~v~~ 227 (377)
|...+. ...+...++.++|+-+.||+|.+++++.+. |+++++|+|+|| .++.+++..-+.++.+
T Consensus 185 P~~~~~--------~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~ 256 (426)
T KOG1111|consen 185 PDAADK--------PSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVM 256 (426)
T ss_pred cCcccc--------CCCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEE
Confidence 864432 223447899999999999999999988654 899999999999 5555566555678999
Q ss_pred ccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHH
Q 017114 228 TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 307 (377)
Q Consensus 228 ~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 307 (377)
+|.++++++.+.|.+-|++++||..|+|+++++||++||+|||++..||.+|+++ +. -......+++++++++++
T Consensus 257 lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP---~d--~i~~~~~~~~dl~~~v~~ 331 (426)
T KOG1111|consen 257 LGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLP---ED--MITLGEPGPDDLVGAVEK 331 (426)
T ss_pred ecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecCCccccCC---cc--ceeccCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999993 22 233445578889998888
Q ss_pred HhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHH
Q 017114 308 LLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFW 350 (377)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~~~~ 350 (377)
++..-. ..-...-+.. +.|+|+.++++-. .+|.++.+..
T Consensus 332 ai~~~~---~~p~~~h~~v~~~y~w~dVa~rTe-kvy~r~~~t~ 371 (426)
T KOG1111|consen 332 AITKLR---TLPLEFHDRVKKMYSWKDVAERTE-KVYDRAATTS 371 (426)
T ss_pred HHHHhc---cCchhHHHHHHHhccHHHHHHHHH-HHHHHHhhcc
Confidence 876321 1122333445 3699999999998 7999987544
No 62
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=4.1e-34 Score=253.26 Aligned_cols=268 Identities=25% Similarity=0.352 Sum_probs=211.4
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCc-------cccccccc------ccchhhHHH
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVP-------VYIPRYTF------SWLVKPMWL 108 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-------~~~~~~~~------~~~~~~~~~ 108 (377)
.+...+.+.+...++|+|++++.... .. +.+..++|.++++|+... .+...... ......++.
T Consensus 70 ~~~~~~~~~~~~~~~D~v~~~~~~~~-~~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (351)
T cd03804 70 PLMPLAIEQFDLSGYDLVISSSHAVA-KG---VITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRI 145 (351)
T ss_pred chhhHHHHhccccCCCEEEEcCcHHh-cc---ccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHH
Confidence 33444566677789999998774222 11 114567888988886321 11111100 112233455
Q ss_pred HHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccccccc
Q 017114 109 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 188 (377)
Q Consensus 109 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 188 (377)
+++..++.+|.++++|+.+++.+.+.+. .+..+++||+|.+.+.+.. .....++++|++.+.||
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~~~~~~~---~~~~vi~~~~d~~~~~~~~-------------~~~~~il~~G~~~~~K~ 209 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARRIKKYYG---RDATVIYPPVDTDRFTPAE-------------EKEDYYLSVGRLVPYKR 209 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHHHHHHhC---CCcEEECCCCCHhhcCcCC-------------CCCCEEEEEEcCccccC
Confidence 6677789999999999999999987654 3567899999988776432 23456999999999999
Q ss_pred HHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCC
Q 017114 189 LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 268 (377)
Q Consensus 189 ~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 268 (377)
++.+++|++.++ ++++|+|+|+..+.+++ ....+|.|.|+++++++..+|+.||++++|+. |++|++++|||+||+|
T Consensus 210 ~~~li~a~~~~~-~~l~ivG~g~~~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~P 286 (351)
T cd03804 210 IDLAIEAFNKLG-KRLVVIGDGPELDRLRA-KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTP 286 (351)
T ss_pred hHHHHHHHHHCC-CcEEEEECChhHHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCC
Confidence 999999999998 99999999988888777 34568999999999999999999999999999 9999999999999999
Q ss_pred eEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017114 269 VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 338 (377)
Q Consensus 269 vI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 338 (377)
||+++.++..+++ .++.+|++++++|+++++++|.++++|++ .+++++++.+++|+|+.+.+++
T Consensus 287 vi~~~~~~~~e~i---~~~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 287 VIAYGKGGALETV---IDGVTGILFEEQTVESLAAAVERFEKNED---FDPQAIRAHAERFSESRFREKI 350 (351)
T ss_pred EEEeCCCCCccee---eCCCCEEEeCCCCHHHHHHHHHHHHhCcc---cCHHHHHHHHHhcCHHHHHHHh
Confidence 9999999999999 88889999999999999999999999874 2344455556789999998875
No 63
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=9.5e-34 Score=244.54 Aligned_cols=238 Identities=16% Similarity=0.205 Sum_probs=185.3
Q ss_pred HhhCCCEEEEeccCCcccccccccccchhhHHHHHHHH-HhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCC
Q 017114 76 KLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFL-HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF 154 (377)
Q Consensus 76 ~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~ 154 (377)
...|+|++++.|+.. +....++.++ .+.+|.++++|+..++.+.+.+....+++.+||||+|.+.|
T Consensus 66 ~~~~~~~v~e~~~~~-------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f 132 (331)
T PHA01630 66 PHVGKNIVFEVADTD-------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMF 132 (331)
T ss_pred cccCCceEEEEEeec-------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHc
Confidence 446789999999821 2333456667 78899999999999999987754224689999999999887
Q ss_pred CCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhcCCCEEEccc
Q 017114 155 HPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGMPAVFTGM 230 (377)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~ 230 (377)
.+.... ..++.++++.|++.+.||++.+++|++.+ ++++++++|++.....+... ..+.+.
T Consensus 133 ~~~~~~----------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~~~-----~~~~~~ 197 (331)
T PHA01630 133 EYKPKE----------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLFGL-----NGVKTP 197 (331)
T ss_pred CCCccc----------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhccc-----cceecc
Confidence 654211 12455677888899999999999999877 57899999976543332111 113566
Q ss_pred cCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCC---------------
Q 017114 231 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP--------------- 295 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~--------------- 295 (377)
++.+++..+|+.||++++||..|+||++++||||||+|||+|+.++.+|++ .++.+|++++.
T Consensus 198 v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i---~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 198 LPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWV---LSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred CCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhc---cCCCceEEeeecccccccccCCcccc
Confidence 889999999999999999999999999999999999999999999999999 77777666542
Q ss_pred ----CCHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017114 296 ----GDLDDCLSKLEPLLYN---QELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 296 ----~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~ 345 (377)
.|.+++++++.+++.| ++.++.++.+++...++|||+.+++++. .+|++
T Consensus 275 ~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~-~l~~~ 330 (331)
T PHA01630 275 YFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWE-KILEK 330 (331)
T ss_pred cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHhc
Confidence 2678888888888886 3445555555555668999999999999 57754
No 64
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=7.2e-33 Score=247.38 Aligned_cols=267 Identities=23% Similarity=0.304 Sum_probs=210.4
Q ss_pred hcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHH
Q 017114 53 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 132 (377)
Q Consensus 53 ~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 132 (377)
..++|+++++.+..... .+.......+.++++|+................... .....++.+|.+++.|+...+.+.
T Consensus 97 ~~~~diii~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ii~~s~~~~~~l~ 173 (372)
T cd04949 97 DTKPDVFILDRPTLDGQ--ALLNMKKAAKVVVVLHSNHVSDNNDPVHSLINNFYE-YVFENLDKVDGVIVATEQQKQDLQ 173 (372)
T ss_pred CCCCCEEEECCccccch--hHHhccCCceEEEEEChHHhCCcccccccccchhhH-HHHhChhhCCEEEEccHHHHHHHH
Confidence 37899999988654433 223344556788888974322211111111111111 222235789999999999999998
Q ss_pred HhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEe
Q 017114 133 AARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIG 208 (377)
Q Consensus 133 ~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G 208 (377)
+.+.. ..++.++|||++...+.+... ....+..++++|++.+.||++.+++++..+ |+++|+|+|
T Consensus 174 ~~~~~-~~~v~~ip~g~~~~~~~~~~~----------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G 242 (372)
T cd04949 174 KQFGN-YNPIYTIPVGSIDPLKLPAQF----------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYG 242 (372)
T ss_pred HHhCC-CCceEEEcccccChhhcccch----------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 87763 345899999999876654310 123567899999999999999999999876 789999999
Q ss_pred cCccHHHHHHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC-CCCccccc
Q 017114 209 DGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPE 283 (377)
Q Consensus 209 ~g~~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~-~~~~~~~~ 283 (377)
.|+....+...... .+|.+.|+. +++..+|+.||++|+||..|++|++++|||++|+|||+++.+ +..+++
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v-- 318 (372)
T cd04949 243 YGDEEEKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEII-- 318 (372)
T ss_pred eCchHHHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHc--
Confidence 98877766665543 369999964 789999999999999999999999999999999999999987 788999
Q ss_pred cCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017114 284 DQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 338 (377)
Q Consensus 284 ~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 338 (377)
.++.+|++++++|+++++++|..+++|++.++++++++++.+++|+|++++++|
T Consensus 319 -~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 319 -EDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred -ccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 889999999999999999999999999999999999999998899999998764
No 65
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.98 E-value=3.2e-30 Score=229.03 Aligned_cols=265 Identities=17% Similarity=0.168 Sum_probs=191.9
Q ss_pred hcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHH
Q 017114 53 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 132 (377)
Q Consensus 53 ~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 132 (377)
+.+..+++.+.|....+ .....+.++|++++|.++...... ......++.+++.||.+++.|+.+.+.+.
T Consensus 100 ~~~~~i~~~~~P~~~~~----~~~~~~~~~Vyd~~D~~~~~~~~~------~~~~~~e~~~~~~ad~vi~~S~~l~~~~~ 169 (373)
T cd04950 100 GFGRPILWYYTPYTLPV----AALLQASLVVYDCVDDLSAFPGGP------PELLEAERRLLKRADLVFTTSPSLYEAKR 169 (373)
T ss_pred CCCCcEEEEeCccHHHH----HhhcCCCeEEEEcccchhccCCCC------HHHHHHHHHHHHhCCEEEECCHHHHHHHh
Confidence 34555666666544333 333678899999999776543221 11226789999999999999999998887
Q ss_pred HhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCcc
Q 017114 133 AARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY 212 (377)
Q Consensus 133 ~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~ 212 (377)
+.+ .++.++|||+|.+.|.+........... ...++++++|+|++.+.++++.+.++++..|+++|+++|.++.
T Consensus 170 ~~~----~~i~~i~ngvd~~~f~~~~~~~~~~~~~--~~~~~~~i~y~G~l~~~~d~~ll~~la~~~p~~~~vliG~~~~ 243 (373)
T cd04950 170 RLN----PNVVLVPNGVDYEHFAAARDPPPPPADL--AALPRPVIGYYGAIAEWLDLELLEALAKARPDWSFVLIGPVDV 243 (373)
T ss_pred hCC----CCEEEcccccCHHHhhcccccCCChhHH--hcCCCCEEEEEeccccccCHHHHHHHHHHCCCCEEEEECCCcC
Confidence 753 5899999999998886543221100111 2346789999999999888988888888889999999998733
Q ss_pred HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCC-----cccchHHHHHHhcCCCeEEecCCCCCccccccCCC
Q 017114 213 REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES-----ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG 287 (377)
Q Consensus 213 ~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~-----e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~ 287 (377)
......+....||+++|+++++++..+++.+|++++|+.. +++|++++||||||+|||+++.+...+. .
T Consensus 244 ~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~~------~ 317 (373)
T cd04950 244 SIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVRRY------E 317 (373)
T ss_pred ccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHHhh------c
Confidence 2233333334689999999999999999999999999853 4679999999999999999986544332 3
Q ss_pred CeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017114 288 KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQ 342 (377)
Q Consensus 288 ~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l 342 (377)
..++ +.++|+++++++|.+++.++...... .+++.++++||++.++++.+.+
T Consensus 318 ~~~~-~~~~d~~~~~~ai~~~l~~~~~~~~~--~~~~~~~~~sW~~~a~~~~~~l 369 (373)
T cd04950 318 DEVV-LIADDPEEFVAAIEKALLEDGPARER--RRLRLAAQNSWDARAAEMLEAL 369 (373)
T ss_pred CcEE-EeCCCHHHHHHHHHHHHhcCCchHHH--HHHHHHHHCCHHHHHHHHHHHH
Confidence 3333 44568999999999976543221111 2223567899999999998433
No 66
>PHA01633 putative glycosyl transferase group 1
Probab=99.98 E-value=7.6e-30 Score=217.24 Aligned_cols=238 Identities=18% Similarity=0.219 Sum_probs=178.6
Q ss_pred CCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCcc
Q 017114 79 CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRF 158 (377)
Q Consensus 79 ~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~ 158 (377)
+.+++.++|+.... ....+.+.+ .+.++++|+..++.+.+.+. +. .+ ++++|+|.+.|.+..
T Consensus 70 ~~~~~tt~~g~~~~--------------~~y~~~m~~-~~~vIavS~~t~~~L~~~G~-~~-~i-~I~~GVD~~~f~p~~ 131 (335)
T PHA01633 70 KKYFYTTCDGIPNI--------------EIVNKYLLQ-DVKFIPNSKFSAENLQEVGL-QV-DL-PVFHGINFKIVENAE 131 (335)
T ss_pred CCceEEeeCCcCch--------------HHHHHHHhc-CCEEEeCCHHHHHHHHHhCC-CC-ce-eeeCCCChhhcCccc
Confidence 46778888876421 123344444 66899999999999998754 32 23 477899999887654
Q ss_pred C-chHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CC----ceEEEEecCccHHHHHHhhcCCCEEEc-
Q 017114 159 R-SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE----ARIAFIGDGPYREELEKMFTGMPAVFT- 228 (377)
Q Consensus 159 ~-~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~----~~l~i~G~g~~~~~l~~~~~~~~v~~~- 228 (377)
. ....+.+.....++.++++++||+.++||++.+++|++.+ ++ ++++++|.+ .++++....+|.|.
T Consensus 132 ~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~----~~~~l~l~~~V~f~g 207 (335)
T PHA01633 132 KLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK----QFTQLEVPANVHFVA 207 (335)
T ss_pred hhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH----HHHHcCCCCcEEEEe
Confidence 2 2334444433334678899999999999999999999876 32 467777742 33443334579988
Q ss_pred --cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccc---------------cCCCCeeE
Q 017114 229 --GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE---------------DQDGKIGY 291 (377)
Q Consensus 229 --g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~---------------~~~~~~g~ 291 (377)
|+++.+++..+|+.||++|+||..|+||++++|||+||+|||+++.++++|+... +.+...|+
T Consensus 208 ~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~ 287 (335)
T PHA01633 208 EFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKW 287 (335)
T ss_pred cCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCcee
Confidence 5667889999999999999999999999999999999999999999998887521 01234577
Q ss_pred EeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 292 LFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 292 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
.++..|+++++++|..++...+ ....+.++++.+++|+|+.+.++++
T Consensus 288 ~~~~~d~~~la~ai~~~~~~~~-~~~~~~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 288 KIHKFQIEDMANAIILAFELQD-REERSMKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred eecCCCHHHHHHHHHHHHhccC-hhhhhHHHHHHHHhcCHHHHHHHhh
Confidence 8888999999999999865432 2334667888889999999999886
No 67
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.97 E-value=1.8e-29 Score=223.82 Aligned_cols=304 Identities=22% Similarity=0.198 Sum_probs=214.1
Q ss_pred CCcEEEEEeeCCCC-Cc--cccCceeecccCCCCCccc------cccccccchHHHHHHHHhcCCCEEEeCCCchhHHHH
Q 017114 1 MGDEVMVVTTHEGV-PQ--EFYGAKLIGSRSFPCPWYQ------KVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGA 71 (377)
Q Consensus 1 ~G~~V~v~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~ 71 (377)
+||+|++++...+. .. ...++++..+......... .....+....++.+.+++.+||+||+|++... +.+
T Consensus 28 ~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~-~~~ 106 (357)
T PRK00726 28 RGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVS-GPG 106 (357)
T ss_pred CCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcch-hHH
Confidence 49999999986532 11 1134454444332111111 01112455567788899999999999985443 334
Q ss_pred HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCC
Q 017114 72 LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS 151 (377)
Q Consensus 72 ~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~ 151 (377)
.+.++..++|++++.|+..+. ...+++++.+|.+++.++... .+ .+..++.++|||++.
T Consensus 107 ~~~~~~~~~p~v~~~~~~~~~---------------~~~r~~~~~~d~ii~~~~~~~---~~---~~~~~i~vi~n~v~~ 165 (357)
T PRK00726 107 GLAARLLGIPLVIHEQNAVPG---------------LANKLLARFAKKVATAFPGAF---PE---FFKPKAVVTGNPVRE 165 (357)
T ss_pred HHHHHHcCCCEEEEcCCCCcc---------------HHHHHHHHHhchheECchhhh---hc---cCCCCEEEECCCCCh
Confidence 456788899999876653221 245677889999999887442 11 356899999999998
Q ss_pred CCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHH-HHHHhCCC--ceEEEEecCccHHHHHHhhcCCCEEEc
Q 017114 152 ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLK-RVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFT 228 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~-~a~~~l~~--~~l~i~G~g~~~~~l~~~~~~~~v~~~ 228 (377)
+.+.+... +.++. ..++.++++++|+....++...++ +|++++.+ ..+.++|+|+..+..+......+|.+.
T Consensus 166 ~~~~~~~~----~~~~~-~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~ 240 (357)
T PRK00726 166 EILALAAP----PARLA-GREGKPTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVV 240 (357)
T ss_pred Hhhcccch----hhhcc-CCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEe
Confidence 76543221 11221 124567788888888778765554 88877743 456778988754433333122248999
Q ss_pred cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC--------CccccccCCCCeeEEeCCCC--H
Q 017114 229 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI--------PDIIPEDQDGKIGYLFNPGD--L 298 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~--------~~~~~~~~~~~~g~~~~~~~--~ 298 (377)
|++ +++.++|+.||+++.++. +++++|||++|+|+|++..++. .+.+ .+.++|+++++.| +
T Consensus 241 g~~--~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i---~~~~~g~~~~~~~~~~ 311 (357)
T PRK00726 241 PFI--DDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHAADDHQTANARAL---VDAGAALLIPQSDLTP 311 (357)
T ss_pred ehH--hhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHH---HHCCCEEEEEcccCCH
Confidence 998 799999999999998652 6899999999999999876431 2455 5677899998877 9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017114 299 DDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRN 340 (377)
Q Consensus 299 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 340 (377)
++++++|.++++|++.+++|++++++..++++.+.+++.+.+
T Consensus 312 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (357)
T PRK00726 312 EKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEE 353 (357)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 999999999999999999999999998888999999988874
No 68
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.97 E-value=3.6e-29 Score=221.65 Aligned_cols=299 Identities=20% Similarity=0.208 Sum_probs=210.2
Q ss_pred CCcEEEEEeeCCCCCcc---ccCceeecccCCCCCccc---ccc---ccccchHHHHHHHHhcCCCEEEeCCCchhHHHH
Q 017114 1 MGDEVMVVTTHEGVPQE---FYGAKLIGSRSFPCPWYQ---KVP---LSLALSPRIISEVARFKPDIIHASSPGIMVFGA 71 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~ 71 (377)
+||+|+++|...+.... ..++++..++........ ++. .......++.+.+++.+||+||++++.. .+.+
T Consensus 26 ~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~-~~~~ 104 (350)
T cd03785 26 RGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQARKILKKFKPDVVVGFGGYV-SGPV 104 (350)
T ss_pred CCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCc-chHH
Confidence 59999999986542221 123444444332111111 010 0133345678889999999999987543 3444
Q ss_pred HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCC
Q 017114 72 LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS 151 (377)
Q Consensus 72 ~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~ 151 (377)
..+++..++|++++.|+.++. ...+++++.+|.+++.|+...+. .+..++.+++||++.
T Consensus 105 ~~~a~~~~~p~v~~~~~~~~~---------------~~~~~~~~~~~~vi~~s~~~~~~------~~~~~~~~i~n~v~~ 163 (350)
T cd03785 105 GLAAKLLGIPLVIHEQNAVPG---------------LANRLLARFADRVALSFPETAKY------FPKDKAVVTGNPVRE 163 (350)
T ss_pred HHHHHHhCCCEEEEcCCCCcc---------------HHHHHHHHhhCEEEEcchhhhhc------CCCCcEEEECCCCch
Confidence 567788899998765543211 23566778899999999987765 245789999999998
Q ss_pred CCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHH-HHHHHHHhCC--CceE-EEEecCccHHHHHHhhcC--CCE
Q 017114 152 ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD-FLKRVMDRLP--EARI-AFIGDGPYREELEKMFTG--MPA 225 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~-~l~~a~~~l~--~~~l-~i~G~g~~~~~l~~~~~~--~~v 225 (377)
+.+.+... +.++.. +++++++++.|+....|+.. .++++++.++ ++.+ .++|.| ..+.+++.+.+ .+|
T Consensus 164 ~~~~~~~~----~~~~~~-~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~~l~~~~~~~~~~v 237 (350)
T cd03785 164 EILALDRE----RARLGL-RPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG-DLEEVKKAYEELGVNY 237 (350)
T ss_pred HHhhhhhh----HHhcCC-CCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc-cHHHHHHHHhccCCCe
Confidence 76644211 222222 34566777777666666654 4558887773 5554 467887 55667766654 589
Q ss_pred EEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC--------CCccccccCCCCeeEEeCCC-
Q 017114 226 VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG--------IPDIIPEDQDGKIGYLFNPG- 296 (377)
Q Consensus 226 ~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~--------~~~~~~~~~~~~~g~~~~~~- 296 (377)
.+.|++ +++.++|+.||++|.++. +++++|||++|+|||+++.++ ..+.+ .+.++|+++++.
T Consensus 238 ~~~g~~--~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l---~~~g~g~~v~~~~ 308 (350)
T cd03785 238 EVFPFI--DDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAADDHQTANARAL---VKAGAAVLIPQEE 308 (350)
T ss_pred EEeehh--hhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHH---HhCCCEEEEecCC
Confidence 999998 899999999999997652 689999999999999987654 13455 567789999876
Q ss_pred -CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHH
Q 017114 297 -DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATR 336 (377)
Q Consensus 297 -~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 336 (377)
|+++++++|.++++|++.++++++++++.++++..+++++
T Consensus 309 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 309 LTPERLAAALLELLSDPERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 8999999999999999999999999998877777776653
No 69
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.97 E-value=6.8e-30 Score=231.04 Aligned_cols=277 Identities=19% Similarity=0.213 Sum_probs=203.2
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHh
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 134 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 134 (377)
..|+|++|++..+.++.++-.+..+.|+++.+|..+|.........+ ...+.+.+ ..+|.+.+.+......+.+.
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~----~~~ll~~~-l~~D~igF~t~~~~~~Fl~~ 205 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPW----REELLRGL-LGADLIGFQTERYARNFLSC 205 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCC----hHHHHHHH-hcCCEEEECCHHHHHHHHHH
Confidence 56999999998777776665555678999999998765422111111 11223333 34999999887766655542
Q ss_pred c----------------ccCCCcEEEecCCCCCCCCCCccCchHHHH---HhhCCCCCCCeEEEeecccccccHHHHHHH
Q 017114 135 R----------------VTAANKIRIWKKGVDSESFHPRFRSSEMRW---RLSNGEPDKPLIVHVGRLGVEKSLDFLKRV 195 (377)
Q Consensus 135 ~----------------~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a 195 (377)
- .....++.++|||+|.+.|.+.......+. ......+++++|+++||+.+.||++.+++|
T Consensus 206 ~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll~A 285 (460)
T cd03788 206 CSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIPERLLA 285 (460)
T ss_pred HHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHHHH
Confidence 1 012346889999999988865433222211 112234577899999999999999999999
Q ss_pred HHhC----CC----ceEEEEecC-----ccH----HHHHHhhcC----------CCEE-EccccCchhHHHHHhcCCEEE
Q 017114 196 MDRL----PE----ARIAFIGDG-----PYR----EELEKMFTG----------MPAV-FTGMLLGEELSQAYASGDVFV 247 (377)
Q Consensus 196 ~~~l----~~----~~l~i~G~g-----~~~----~~l~~~~~~----------~~v~-~~g~~~~~~~~~~~~~adi~v 247 (377)
++.+ |+ ++|+++|.+ +.. +.+++++.+ ..|. +.|.++.+++..+|+.||+++
T Consensus 286 ~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v 365 (460)
T cd03788 286 FERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVAL 365 (460)
T ss_pred HHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEE
Confidence 9765 44 568888642 222 233333211 1244 457889999999999999999
Q ss_pred eccCCcccchHHHHHHhcCCC----eEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC-HHHHHHHHHHH
Q 017114 248 MPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAA 322 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~ 322 (377)
+||..||||++++||||||+| ||+|+.+|..+. +.+|+++++.|+++++++|.+++++ ++.++.+.+++
T Consensus 366 ~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~------~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~ 439 (460)
T cd03788 366 VTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE------LSGALLVNPYDIDEVADAIHRALTMPLEERRERHRKL 439 (460)
T ss_pred eCccccccCcccceeEEEecCCCceEEEeccccchhh------cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999 999988877664 3468999999999999999999985 57788888889
Q ss_pred HHHHHhcCHHHHHHHHHHHH
Q 017114 323 RQEMEKYDWRAATRTIRNEQ 342 (377)
Q Consensus 323 ~~~~~~~s~~~~~~~~~~~l 342 (377)
++.+++|+++.+++++++.+
T Consensus 440 ~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 440 REYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHhCCHHHHHHHHHHhh
Confidence 99999999999999988654
No 70
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.97 E-value=5e-29 Score=223.27 Aligned_cols=276 Identities=20% Similarity=0.225 Sum_probs=205.7
Q ss_pred CCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhc
Q 017114 56 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR 135 (377)
Q Consensus 56 pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 135 (377)
-|+|++|+...+.++.++-.+....++.+..|..+|....-....+ +.-.-..+-.||.|.+.+....+.|.+..
T Consensus 128 ~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~~e~f~~lp~-----r~~il~gll~~dligF~t~~~~~~Fl~~~ 202 (456)
T TIGR02400 128 GDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLPW-----RRELLEGLLAYDLVGFQTYDDARNFLSAV 202 (456)
T ss_pred CCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCc-----HHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 3799999988887777765555667888999987765322111111 11122334569999999999888776632
Q ss_pred c---------------cCCCcEEEecCCCCCCCCCCccCchHHHH---HhhCCCCCCCeEEEeecccccccHHHHHHHHH
Q 017114 136 V---------------TAANKIRIWKKGVDSESFHPRFRSSEMRW---RLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 197 (377)
Q Consensus 136 ~---------------~~~~~i~~i~~gv~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~ 197 (377)
. ....++.++|||+|.+.|.+......... .+.....++++|+++||+++.||++.+++|++
T Consensus 203 ~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~vIl~VgRLd~~KGi~~ll~A~~ 282 (456)
T TIGR02400 203 SRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLKGRKLIIGVDRLDYSKGLPERLLAFE 282 (456)
T ss_pred HHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcCCCeEEEEccccccccCHHHHHHHHH
Confidence 1 13456889999999998865432221111 11111246789999999999999999999998
Q ss_pred hC----CC----ceEEEEe-----cCccHHHHHHhhcCC--------------CE-EEccccCchhHHHHHhcCCEEEec
Q 017114 198 RL----PE----ARIAFIG-----DGPYREELEKMFTGM--------------PA-VFTGMLLGEELSQAYASGDVFVMP 249 (377)
Q Consensus 198 ~l----~~----~~l~i~G-----~g~~~~~l~~~~~~~--------------~v-~~~g~~~~~~~~~~~~~adi~v~p 249 (377)
.+ |+ +.++++| +++..+.+++.+++. .+ .+.+.++.+++..+|+.||++++|
T Consensus 283 ~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~ 362 (456)
T TIGR02400 283 RFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVT 362 (456)
T ss_pred HHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEEC
Confidence 75 44 4577664 334444444333211 13 345688899999999999999999
Q ss_pred cCCcccchHHHHHHhcCCC----eEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Q 017114 250 SESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQ 324 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~P----vI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~ 324 (377)
|..||||++++||||||+| +|+|+.+|..+.+ . +|++++|.|+++++++|.++++ ++++++++.+.+++
T Consensus 363 S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l---~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~ 436 (456)
T TIGR02400 363 PLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQEL---N---GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMD 436 (456)
T ss_pred ccccccCccHHHHHHhcCCCCceEEEeCCCCChHHh---C---CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999 9999998888877 3 6899999999999999999998 67788888888999
Q ss_pred HHHhcCHHHHHHHHHHHH
Q 017114 325 EMEKYDWRAATRTIRNEQ 342 (377)
Q Consensus 325 ~~~~~s~~~~~~~~~~~l 342 (377)
.+.+|++..+++++++++
T Consensus 437 ~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 437 KLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHhhCCHHHHHHHHHHHh
Confidence 998999999999998654
No 71
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.97 E-value=2e-28 Score=218.11 Aligned_cols=266 Identities=14% Similarity=0.191 Sum_probs=199.3
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHH-----hhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCe
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAK-----LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 119 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~-----~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 119 (377)
.++.+++++.+||+||++++.....++..+.+ ..++|++..++|.+... ..++.+.+|.
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~----------------~~w~~~~~d~ 153 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCH----------------PTWFHKGVTR 153 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcC----------------cccccCCCCE
Confidence 56778999999999999775433222222222 24789988887763110 1245678999
Q ss_pred eEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC
Q 017114 120 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 199 (377)
Q Consensus 120 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l 199 (377)
++++|+..++.+.+.+ .+.+++.+++++++.++..+.......+.++.. +++.++++++|+....|++..+++++...
T Consensus 154 ~~~~s~~~~~~l~~~g-~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl-~~~~~~il~~Gg~~g~~~~~~li~~l~~~ 231 (382)
T PLN02605 154 CFCPSEEVAKRALKRG-LEPSQIRVYGLPIRPSFARAVRPKDELRRELGM-DEDLPAVLLMGGGEGMGPLEETARALGDS 231 (382)
T ss_pred EEECCHHHHHHHHHcC-CCHHHEEEECcccCHhhccCCCCHHHHHHHcCC-CCCCcEEEEECCCcccccHHHHHHHHHHh
Confidence 9999999999998876 477899999999987655443334455555544 35678999999988899999998888642
Q ss_pred --------CCce-EEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 200 --------PEAR-IAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 200 --------~~~~-l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
++.+ ++++|++. ..+.+++.....+|.+.|++ +++.++|+.||++|.++ .|++++|||+||+|+
T Consensus 232 ~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~--~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~Pv 305 (382)
T PLN02605 232 LYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFV--TNMEEWMGACDCIITKA----GPGTIAEALIRGLPI 305 (382)
T ss_pred hccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEecc--ccHHHHHHhCCEEEECC----CcchHHHHHHcCCCE
Confidence 4565 56778664 34566555334579999999 58999999999999755 488999999999999
Q ss_pred EEecC------CCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017114 270 VGVRA------GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAARQEMEKYDWRAATRTIRN 340 (377)
Q Consensus 270 I~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 340 (377)
|+++. ++. +.+ .+++.|+.. .|+++++++|.+++.| ++.+++|++++++.....+.+.+++.+.+
T Consensus 306 I~~~~~pgqe~gn~-~~i---~~~g~g~~~--~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~ 377 (382)
T PLN02605 306 ILNGYIPGQEEGNV-PYV---VDNGFGAFS--ESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHE 377 (382)
T ss_pred EEecCCCccchhhH-HHH---HhCCceeec--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 99984 233 334 345566654 6999999999999998 99999999999998888888888877764
No 72
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.97 E-value=5.2e-28 Score=214.71 Aligned_cols=289 Identities=17% Similarity=0.194 Sum_probs=192.5
Q ss_pred cCCCEEEeCCCchhHHHHHHHH-HhhCCCEEEEeccCCcccc--ccc--ccc-------------cchhhHHHHHHHHHh
Q 017114 54 FKPDIIHASSPGIMVFGALIIA-KLLCVPIVMSYHTHVPVYI--PRY--TFS-------------WLVKPMWLVIKFLHR 115 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~--~~~--~~~-------------~~~~~~~~~~~~~~~ 115 (377)
.++|++|+|.+... .+++.++ +..++|+|.+.|....... .+. ... ....-...+|+.+..
T Consensus 147 ~~~dViH~HeWm~g-~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa~ 225 (590)
T cd03793 147 EPAVVAHFHEWQAG-VGLPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAAAH 225 (590)
T ss_pred CCCeEEEEcchhHh-HHHHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHHHh
Confidence 47999999997543 3434344 4468899999997543321 110 000 000122347889999
Q ss_pred cCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCch-----------H-----HHHHhhCCCCCCCeEEE
Q 017114 116 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-----------E-----MRWRLSNGEPDKPLIVH 179 (377)
Q Consensus 116 ~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~-----------~-----~~~~~~~~~~~~~~i~~ 179 (377)
.||.++++|+.++..+...+..++++ |+|||+|.+.|.+..... + .+..+.+ +.++.+++|
T Consensus 226 ~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~-~~d~tli~f 302 (590)
T cd03793 226 CAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDF-DLDKTLYFF 302 (590)
T ss_pred hCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCC-CCCCeEEEE
Confidence 99999999999999999998866666 999999999987654211 1 1222222 235566666
Q ss_pred -eecccc-cccHHHHHHHHHhCC--------C---ceEEEEecC------------ccHHHH----HH------------
Q 017114 180 -VGRLGV-EKSLDFLKRVMDRLP--------E---ARIAFIGDG------------PYREEL----EK------------ 218 (377)
Q Consensus 180 -~G~~~~-~k~~~~l~~a~~~l~--------~---~~l~i~G~g------------~~~~~l----~~------------ 218 (377)
+||+.. .||++.+++|+.++. + +-|+++-.+ ...+.+ ..
T Consensus 303 ~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~ 382 (590)
T cd03793 303 TAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFEA 382 (590)
T ss_pred EeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 799988 999999999998872 2 122332111 000000 00
Q ss_pred ---------------------------------------------------------hhc--CC--CEEEcc-ccC----
Q 017114 219 ---------------------------------------------------------MFT--GM--PAVFTG-MLL---- 232 (377)
Q Consensus 219 ---------------------------------------------------------~~~--~~--~v~~~g-~~~---- 232 (377)
+.+ ++ .|.|++ +++
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~ 462 (590)
T cd03793 383 ALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNP 462 (590)
T ss_pred hhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCC
Confidence 000 00 144443 222
Q ss_pred --chhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcccccc-CCC-CeeEEeC-------CCCHHHH
Q 017114 233 --GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED-QDG-KIGYLFN-------PGDLDDC 301 (377)
Q Consensus 233 --~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~-~~~-~~g~~~~-------~~~~~~l 301 (377)
..+..++++.||++|+||.+|+||.+++||||||+|||+|+.++..+.+.+. .++ ..|+.+. +.+.+++
T Consensus 463 ~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 463 LLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred cCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 2357789999999999999999999999999999999999999885444211 223 3566665 3467888
Q ss_pred HHHHHHHhhCHHHHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHHHH
Q 017114 302 LSKLEPLLYNQELRETMGQAAR--QEMEKYDWRAATRTIRNEQYNAAIW 348 (377)
Q Consensus 302 ~~~i~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~ly~~~~~ 348 (377)
+++|.++++. +.++.+.++++ +..+.|+|++.++.|. ..|+.++.
T Consensus 543 a~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~-~A~~~Al~ 589 (590)
T cd03793 543 TQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYR-KARQLALS 589 (590)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhh
Confidence 8999888854 45666666554 6668899999999999 68887764
No 73
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.96 E-value=9.9e-28 Score=217.29 Aligned_cols=281 Identities=16% Similarity=0.176 Sum_probs=197.9
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecC
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 124 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 124 (377)
..+.+.+++.+||+++++....+ ...+..++..++|+++..+........ ....+..+.+.+++.+|.+++.|
T Consensus 114 ~~~~~~l~~~~Pd~v~~~~~~~~-~~~l~~~~~~~ip~vl~~~~~~~~s~~------~~~~~~~~~r~~~~~~d~ii~~S 186 (425)
T PRK05749 114 GAVRRFLRFWRPKLVIIMETELW-PNLIAELKRRGIPLVLANARLSERSFK------RYQKFKRFYRLLFKNIDLVLAQS 186 (425)
T ss_pred HHHHHHHHhhCCCEEEEEecchh-HHHHHHHHHCCCCEEEEeccCChhhHH------HHHHHHHHHHHHHHhCCEEEECC
Confidence 57888899999999998854332 223345677899999875543221111 11224457788899999999999
Q ss_pred hhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccC-c--hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC--
Q 017114 125 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR-S--SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-- 199 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~-~--~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l-- 199 (377)
+..++.+.+.+. +.+ +.+++|. +.+...+... . ...+..+ . +++++++++|+. .++.+.+++|++.+
T Consensus 187 ~~~~~~l~~~g~-~~~-i~vi~n~-~~d~~~~~~~~~~~~~~r~~~--~-~~~~vil~~~~~--~~~~~~ll~A~~~l~~ 258 (425)
T PRK05749 187 EEDAERFLALGA-KNE-VTVTGNL-KFDIEVPPELAARAATLRRQL--A-PNRPVWIAASTH--EGEEELVLDAHRALLK 258 (425)
T ss_pred HHHHHHHHHcCC-CCC-cEecccc-cccCCCChhhHHHHHHHHHHh--c-CCCcEEEEeCCC--chHHHHHHHHHHHHHH
Confidence 999999988754 555 8888884 2222221111 1 1222222 2 456778887764 57788999998764
Q ss_pred --CCceEEEEecCccH-HHHHHhhcCCCE---EEcccc------------CchhHHHHHhcCCEEEe-ccCCcccchHHH
Q 017114 200 --PEARIAFIGDGPYR-EELEKMFTGMPA---VFTGML------------LGEELSQAYASGDVFVM-PSESETLGLVVL 260 (377)
Q Consensus 200 --~~~~l~i~G~g~~~-~~l~~~~~~~~v---~~~g~~------------~~~~~~~~~~~adi~v~-ps~~e~~~~~~~ 260 (377)
|+++++|+|+|+.. +++++.+++.++ .+.+.. +.+|+..+|+.||++++ +|..|++|.+++
T Consensus 259 ~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~l 338 (425)
T PRK05749 259 QFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPL 338 (425)
T ss_pred hCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHH
Confidence 78999999999875 677777665432 222211 12589999999999655 677789999999
Q ss_pred HHHhcCCCeEEecC-CCCCccccccCC-CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017114 261 EAMSSGIPVVGVRA-GGIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 338 (377)
Q Consensus 261 Ea~a~G~PvI~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 338 (377)
|||+||+|||+++. ++..+.. +. ..+|.++.++|+++++++|.++++|++.+++|++++++.+++. ....+++
T Consensus 339 EAma~G~PVI~g~~~~~~~e~~---~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~--~~~~~~~ 413 (425)
T PRK05749 339 EPAAFGVPVISGPHTFNFKEIF---ERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN--QGALQRT 413 (425)
T ss_pred HHHHhCCCEEECCCccCHHHHH---HHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC--ccHHHHH
Confidence 99999999999764 4555655 22 2357777788999999999999999999999999999998654 2555666
Q ss_pred HHHHHHHH
Q 017114 339 RNEQYNAA 346 (377)
Q Consensus 339 ~~~ly~~~ 346 (377)
. .+++..
T Consensus 414 ~-~~l~~~ 420 (425)
T PRK05749 414 L-QLLEPY 420 (425)
T ss_pred H-HHHHHh
Confidence 6 344443
No 74
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.96 E-value=1.6e-27 Score=210.97 Aligned_cols=298 Identities=19% Similarity=0.195 Sum_probs=199.4
Q ss_pred CCcEEEEEeeCCCCCcc---ccCceeecccCCCCCcc---ccc---cccccchHHHHHHHHhcCCCEEEeCCCchhHHHH
Q 017114 1 MGDEVMVVTTHEGVPQE---FYGAKLIGSRSFPCPWY---QKV---PLSLALSPRIISEVARFKPDIIHASSPGIMVFGA 71 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~ 71 (377)
+||+|+++|...+.... ..++++..+........ ..+ ...+....++.+.+++.+||+||++.+.. .+.+
T Consensus 27 ~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~-~~~~ 105 (348)
T TIGR01133 27 RGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYV-SGPA 105 (348)
T ss_pred CCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcc-cHHH
Confidence 59999999874432211 13444444432221100 001 11133456788889999999999997543 3334
Q ss_pred HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCC
Q 017114 72 LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS 151 (377)
Q Consensus 72 ~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~ 151 (377)
.++++..++|+++..++..+ ....+++++.+|.+++.|+...+.+ +..+++||++.
T Consensus 106 ~~~~~~~~~p~v~~~~~~~~---------------~~~~~~~~~~~d~ii~~~~~~~~~~---------~~~~i~n~v~~ 161 (348)
T TIGR01133 106 GLAAKLLGIPLFHHEQNAVP---------------GLTNKLLSRFAKKVLISFPGAKDHF---------EAVLVGNPVRQ 161 (348)
T ss_pred HHHHHHcCCCEEEECCCCCc---------------cHHHHHHHHHhCeeEECchhHhhcC---------CceEEcCCcCH
Confidence 44677788999854332211 1235678889999999999876655 23689999987
Q ss_pred CCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHH-HHHHHHhC--CCceEEEEecCccHHHHHHhhcCCCE-EE
Q 017114 152 ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDF-LKRVMDRL--PEARIAFIGDGPYREELEKMFTGMPA-VF 227 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~-l~~a~~~l--~~~~l~i~G~g~~~~~l~~~~~~~~v-~~ 227 (377)
..+.+... +..+.. +++.++++++|+....|++.. ++++++.+ ++.++++++++...+.+++.+.+.++ ..
T Consensus 162 ~~~~~~~~----~~~~~~-~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~~~l~~~~~~~~l~~~ 236 (348)
T TIGR01133 162 EIRSLPVP----RERFGL-REGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKNDLEKVKNVYQELGIEAI 236 (348)
T ss_pred HHhcccch----hhhcCC-CCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcchHHHHHHHHhhCCceEE
Confidence 65543211 112222 346678889987777788654 55787766 34566444433344677776665442 23
Q ss_pred ccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC-------CccccccCCCCeeEEeCCCC--H
Q 017114 228 TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI-------PDIIPEDQDGKIGYLFNPGD--L 298 (377)
Q Consensus 228 ~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~-------~~~~~~~~~~~~g~~~~~~~--~ 298 (377)
..+.. .++.++|+.||++|.++ .|++++|||++|+|+|+++.++. .+++ .++.+|+++++.| +
T Consensus 237 v~~~~-~~~~~~l~~ad~~v~~~----g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i---~~~~~G~~~~~~~~~~ 308 (348)
T TIGR01133 237 VTFID-ENMAAAYAAADLVISRA----GASTVAELAAAGVPAILIPYPYAADDQYYNAKFL---EDLGAGLVIRQKELLP 308 (348)
T ss_pred ecCcc-cCHHHHHHhCCEEEECC----ChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH---HHCCCEEEEecccCCH
Confidence 34443 38999999999999864 27899999999999999876542 2466 6788999998776 9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHH
Q 017114 299 DDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATR 336 (377)
Q Consensus 299 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 336 (377)
+++++++.++++|++.+++|++++++.++....+++++
T Consensus 309 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (348)
T TIGR01133 309 EKLLEALLKLLLDPANLEAMAEAARKLAKPDAAKRIAE 346 (348)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHhcCCccHHHHHHh
Confidence 99999999999999999999999988776666666554
No 75
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.96 E-value=6.3e-27 Score=204.29 Aligned_cols=256 Identities=16% Similarity=0.128 Sum_probs=188.5
Q ss_pred HHHHHHHHhcCC-CEEEeCCCchhH--HHH--HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCe
Q 017114 45 PRIISEVARFKP-DIIHASSPGIMV--FGA--LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 119 (377)
Q Consensus 45 ~~~~~~i~~~~p-Dii~~~~~~~~~--~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 119 (377)
..+..++...++ |+||++.|.... +.. +...++.|+|+++++||.++...... ...+.+++.+++.+|.
T Consensus 53 ~~~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~------~~~~~~~~~~~~~aD~ 126 (333)
T PRK09814 53 KRLDGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFDSN------YYLMKEEIDMLNLADV 126 (333)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhcccc------chhhHHHHHHHHhCCE
Confidence 456667777888 999999876543 112 22334447999999999887533211 1124678899999999
Q ss_pred eEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC
Q 017114 120 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 199 (377)
Q Consensus 120 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l 199 (377)
++++|+.+++.+.+.+. +..++.++++..+.....+.. .......++|+|++....++.. ..
T Consensus 127 iI~~S~~~~~~l~~~g~-~~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~i~yaG~l~k~~~l~~------~~ 188 (333)
T PRK09814 127 LIVHSKKMKDRLVEEGL-TTDKIIVQGIFDYLNDIELVK-----------TPSFQKKINFAGNLEKSPFLKN------WS 188 (333)
T ss_pred EEECCHHHHHHHHHcCC-CcCceEecccccccccccccc-----------cccCCceEEEecChhhchHHHh------cC
Confidence 99999999999988754 556777776554332111100 1234568999999985432211 24
Q ss_pred CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC-----------CcccchHHHHHHhcCCC
Q 017114 200 PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-----------SETLGLVVLEAMSSGIP 268 (377)
Q Consensus 200 ~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~-----------~e~~~~~~~Ea~a~G~P 268 (377)
++++|+++|+|+..+ ....+|.|.|+++.+++..+|+. |+++.+.. .-.+|.++.||||||+|
T Consensus 189 ~~~~l~i~G~g~~~~-----~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~P 262 (333)
T PRK09814 189 QGIKLTVFGPNPEDL-----ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLP 262 (333)
T ss_pred CCCeEEEECCCcccc-----ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCC
Confidence 689999999987544 22358999999999999999998 77665432 13679999999999999
Q ss_pred eEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 017114 269 VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRT 337 (377)
Q Consensus 269 vI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 337 (377)
||+++.++..+++ +++.+|++++ +.+++++++..+ +++.+++|++++++.++++.--...++
T Consensus 263 VI~~~~~~~~~~V---~~~~~G~~v~--~~~el~~~l~~~--~~~~~~~m~~n~~~~~~~~~~g~~~~~ 324 (333)
T PRK09814 263 VIVWSKAAIADFI---VENGLGFVVD--SLEELPEIIDNI--TEEEYQEMVENVKKISKLLRNGYFTKK 324 (333)
T ss_pred EEECCCccHHHHH---HhCCceEEeC--CHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 9999999999999 8899999998 788999999986 467789999999998876554444444
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.96 E-value=1.3e-26 Score=207.03 Aligned_cols=270 Identities=16% Similarity=0.163 Sum_probs=196.6
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEec
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
..++.+.+++.+||+||++++... +..+..++..++|++...++.... .+++++.+|.+++.
T Consensus 93 ~~~l~~~l~~~~pD~Vi~~~~~~~-~~~~~~~~~~~ip~~~~~td~~~~-----------------~~~~~~~ad~i~~~ 154 (380)
T PRK13609 93 RKRLKLLLQAEKPDIVINTFPIIA-VPELKKQTGISIPTYNVLTDFCLH-----------------KIWVHREVDRYFVA 154 (380)
T ss_pred HHHHHHHHHHhCcCEEEEcChHHH-HHHHHHhcCCCCCeEEEeCCCCCC-----------------cccccCCCCEEEEC
Confidence 367889999999999999875433 333333445678988665553211 12456789999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCCCce
Q 017114 124 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEAR 203 (377)
Q Consensus 124 s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~ 203 (377)
|+...+.+.+.+ .+.+++.+++++++.... ........+.++...++...++++.|+....|+++.+++++...++++
T Consensus 155 s~~~~~~l~~~g-i~~~ki~v~G~p~~~~f~-~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~~~~~~ 232 (380)
T PRK13609 155 TDHVKKVLVDIG-VPPEQVVETGIPIRSSFE-LKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLMSVPDLQ 232 (380)
T ss_pred CHHHHHHHHHcC-CChhHEEEECcccChHHc-CcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhhCCCcE
Confidence 999999998865 466788888777654332 222223344444443334456667788888899999999998778899
Q ss_pred EEEEec-C-ccHHHHHHhhcC--CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEec-CCCCC
Q 017114 204 IAFIGD-G-PYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR-AGGIP 278 (377)
Q Consensus 204 l~i~G~-g-~~~~~l~~~~~~--~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~-~~~~~ 278 (377)
++++|+ + ...+.+++...+ .+|++.|++ +++.++|+.||+++. ++.|++++|||+||+|||+++ .++..
T Consensus 233 ~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~--~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~~g~~ 306 (380)
T PRK13609 233 VVVVCGKNEALKQSLEDLQETNPDALKVFGYV--ENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILYKPVPGQE 306 (380)
T ss_pred EEEEeCCCHHHHHHHHHHHhcCCCcEEEEech--hhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEECCCCCCcc
Confidence 887753 3 355677666543 369999999 678999999999884 455889999999999999976 44421
Q ss_pred ----ccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017114 279 ----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 279 ----~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~ 345 (377)
+++ .+. |..+...|+++++++|.++++|++.+++|++++++..+.++++.+++.+.+ ++..
T Consensus 307 ~~n~~~~---~~~--G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~-~~~~ 371 (380)
T PRK13609 307 KENAMYF---ERK--GAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILA-ENHV 371 (380)
T ss_pred hHHHHHH---HhC--CcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-hhhh
Confidence 233 223 333345699999999999999999999999999887778899999999884 5433
No 77
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=1.4e-26 Score=206.45 Aligned_cols=270 Identities=14% Similarity=0.227 Sum_probs=195.4
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecC
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 124 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 124 (377)
.++.+.+++.+||+|+++.+... +..+..++..++|++...+|.... ..++.+.+|.+++.|
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~-~~~l~~~~~~~iP~~~v~td~~~~-----------------~~w~~~~~d~~~v~s 155 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPV-MSVLTEQFNINIPVATVMTDYRLH-----------------KNWITPYSTRYYVAT 155 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHH-HHHHHHhcCCCCCEEEEeCCCCcc-----------------cccccCCCCEEEECC
Confidence 57889999999999999876432 222223344588987655553110 123457899999999
Q ss_pred hhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHH-hCCCce
Q 017114 125 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD-RLPEAR 203 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~-~l~~~~ 203 (377)
+.+++.+.+.+ .+.+++.+++++++..+..+ ......+.++...++...++++.|+++..|+++.+++++. ..++++
T Consensus 156 ~~~~~~l~~~g-i~~~ki~v~GiPv~~~f~~~-~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~~~~~~~ 233 (391)
T PRK13608 156 KETKQDFIDVG-IDPSTVKVTGIPIDNKFETP-IDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDILAKSANAQ 233 (391)
T ss_pred HHHHHHHHHcC-CCHHHEEEECeecChHhccc-ccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHHhcCCCce
Confidence 99999998865 46789999888887554322 2233444444443334455678899998899999999853 447788
Q ss_pred EEEE-ecCc-cHHHHHHhhc-CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecC-CCC--
Q 017114 204 IAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA-GGI-- 277 (377)
Q Consensus 204 l~i~-G~g~-~~~~l~~~~~-~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~-~~~-- 277 (377)
++++ |.+. ..+.+++... ..++.+.|++ +++.++|+.||++|. .+.|+++.|||++|+|+|+++. ++.
T Consensus 234 ~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~--~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~pgqe~ 307 (391)
T PRK13608 234 VVMICGKSKELKRSLTAKFKSNENVLILGYT--KHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFLNPAPGQEL 307 (391)
T ss_pred EEEEcCCCHHHHHHHHHHhccCCCeEEEecc--chHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEECCCCCCcch
Confidence 8665 5443 3345554432 3479999998 789999999999996 3458899999999999999863 331
Q ss_pred --CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017114 278 --PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 278 --~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~ 346 (377)
..++ .+.+.|+.. .|+++++++|.++++|++.+++|++++++..+.++++.+++.+. .+++.+
T Consensus 308 ~N~~~~---~~~G~g~~~--~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~-~l~~~~ 372 (391)
T PRK13608 308 ENALYF---EEKGFGKIA--DTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLL-DLIGHS 372 (391)
T ss_pred hHHHHH---HhCCcEEEe--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHhhhh
Confidence 1223 345556554 48999999999999999999999999999888899999999998 466544
No 78
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.95 E-value=8.3e-27 Score=221.52 Aligned_cols=284 Identities=19% Similarity=0.185 Sum_probs=209.1
Q ss_pred cCC-CEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHH
Q 017114 54 FKP-DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 132 (377)
Q Consensus 54 ~~p-Dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 132 (377)
.++ |+|++|+.+.+.++.++-.+..+.++.+.+|..+|.........+.. .+. ..+-.||.|-+.+......|.
T Consensus 145 ~~~~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r~----~il-~gll~aDligF~t~~y~r~Fl 219 (797)
T PLN03063 145 YEEGDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSRS----ELL-RAVLTADLIGFHTYDFARHFL 219 (797)
T ss_pred cCCCCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCCHH----HHH-HHHhcCCEEEeCCHHHHHHHH
Confidence 344 79999999888888777667778899999999887643222222111 111 233468888888888877776
Q ss_pred Hhc---------------ccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEeecccccccHHHHHH
Q 017114 133 AAR---------------VTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 194 (377)
Q Consensus 133 ~~~---------------~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 194 (377)
+.- .....++.++|+|+|.+.|.+...... ....+.....++++|+++||+++.||++.+++
T Consensus 220 ~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lIl~VgRLd~~KGi~~lL~ 299 (797)
T PLN03063 220 SACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFAGRKVILGVDRLDMIKGIPQKYL 299 (797)
T ss_pred HHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEEEEecccccccCHHHHHH
Confidence 521 012256889999999988765432211 11111112236778999999999999999999
Q ss_pred HHHhC----CCce----EEEEe-----cCccHHHHHHhhcCC--------------CEE-EccccCchhHHHHHhcCCEE
Q 017114 195 VMDRL----PEAR----IAFIG-----DGPYREELEKMFTGM--------------PAV-FTGMLLGEELSQAYASGDVF 246 (377)
Q Consensus 195 a~~~l----~~~~----l~i~G-----~g~~~~~l~~~~~~~--------------~v~-~~g~~~~~~~~~~~~~adi~ 246 (377)
|++.+ |+++ |+.++ +++..+.+++.+.+. .|. +.+.++.+++..+|+.||++
T Consensus 300 Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvf 379 (797)
T PLN03063 300 AFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVM 379 (797)
T ss_pred HHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEE
Confidence 99875 5543 33333 334444444433211 133 33578899999999999999
Q ss_pred EeccCCcccchHHHHHHhcCCC----eEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHH
Q 017114 247 VMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQA 321 (377)
Q Consensus 247 v~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~ 321 (377)
|+||..||+|++++||||||+| +|+|+.+|..+.+ +..|++++|.|+++++++|.++++ ++++++...+.
T Consensus 380 vvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l-----~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~ 454 (797)
T PLN03063 380 LVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL-----GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRH 454 (797)
T ss_pred EeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhh-----cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999 9999999988876 557999999999999999999999 78888888888
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 017114 322 ARQEMEKYDWRAATRTIRNEQYNAAIW 348 (377)
Q Consensus 322 ~~~~~~~~s~~~~~~~~~~~ly~~~~~ 348 (377)
.++.+.+++|+.+++.+++ -++++..
T Consensus 455 ~~~~v~~~~~~~Wa~~fl~-~l~~~~~ 480 (797)
T PLN03063 455 NFQYVKTHSAQKWADDFMS-ELNDIIV 480 (797)
T ss_pred HHHhhhhCCHHHHHHHHHH-HHHHHhh
Confidence 9999999999999999995 5555543
No 79
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.94 E-value=1.4e-25 Score=213.92 Aligned_cols=281 Identities=20% Similarity=0.272 Sum_probs=202.0
Q ss_pred CCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhc
Q 017114 56 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR 135 (377)
Q Consensus 56 pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 135 (377)
-|+|++|+.+.+.++.++-.+....++-+..|-.+|.........+. .-.-..+-.+|.|-+.+......|.+.-
T Consensus 134 ~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp~~-----~~ll~~ll~~Dligf~t~~~~r~Fl~~~ 208 (726)
T PRK14501 134 GDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPSFEVFRLLPWR-----EEILEGLLGADLIGFHTYDYVRHFLSSV 208 (726)
T ss_pred CCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCCCh-----HHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 38999999988888777655566788999999988764322221211 1112234568888888888777665531
Q ss_pred ---------------ccCCCcEEEecCCCCCCCCCCccCchHH---HHHhhCCCCCCCeEEEeecccccccHHHHHHHHH
Q 017114 136 ---------------VTAANKIRIWKKGVDSESFHPRFRSSEM---RWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 197 (377)
Q Consensus 136 ---------------~~~~~~i~~i~~gv~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~ 197 (377)
.....++.++|+|+|.+.|.+....... ...+.....++++|+++||+.+.||+..+++|++
T Consensus 209 ~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~~~Kgi~~~l~A~~ 288 (726)
T PRK14501 209 LRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLDYTKGIPRRLLAFE 288 (726)
T ss_pred HHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcccccCHHHHHHHHH
Confidence 0112358899999999988665322211 1112112346779999999999999999999998
Q ss_pred hC----CC----ceEEEEec----C-ccHHHHHHhhcC----C----------C-EEEccccCchhHHHHHhcCCEEEec
Q 017114 198 RL----PE----ARIAFIGD----G-PYREELEKMFTG----M----------P-AVFTGMLLGEELSQAYASGDVFVMP 249 (377)
Q Consensus 198 ~l----~~----~~l~i~G~----g-~~~~~l~~~~~~----~----------~-v~~~g~~~~~~~~~~~~~adi~v~p 249 (377)
.+ |+ ++|+++|. + +..+.+++.+.+ . . +.+.|.++.+++..+|+.||++++|
T Consensus 289 ~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~ 368 (726)
T PRK14501 289 RFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVT 368 (726)
T ss_pred HHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEec
Confidence 75 54 67888872 2 222333332221 1 1 3577899999999999999999999
Q ss_pred cCCcccchHHHHHHhcCC-----CeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC-HHHHHHHHHHHH
Q 017114 250 SESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAAR 323 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~-----PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~ 323 (377)
|..||||++++||||||+ ||++...|+..++. .|++++|.|+++++++|.+++.+ .+.+....++++
T Consensus 369 S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~-------~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~ 441 (726)
T PRK14501 369 PLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA-------EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQ 441 (726)
T ss_pred ccccccCcccceEEEEcCCCCceEEEecccchhHHhC-------cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999955 56655667776654 38999999999999999999985 355666667788
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017114 324 QEMEKYDWRAATRTIRNEQYNAAIWF 349 (377)
Q Consensus 324 ~~~~~~s~~~~~~~~~~~ly~~~~~~ 349 (377)
+.+.+|+|+.++++++ ..|+++...
T Consensus 442 ~~v~~~~~~~w~~~~l-~~l~~~~~~ 466 (726)
T PRK14501 442 ERLRRYDVHKWASDFL-DELREAAEK 466 (726)
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHhh
Confidence 8888999999999999 567766543
No 80
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.93 E-value=2e-25 Score=176.93 Aligned_cols=153 Identities=38% Similarity=0.734 Sum_probs=136.2
Q ss_pred CCCCCCeEEEeecccccccHHHHHHHHHhC-----CCceEEEEecCccHHHHHHhhcC----CCEEEccccCchhHHHHH
Q 017114 170 GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAY 240 (377)
Q Consensus 170 ~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l-----~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~ 240 (377)
...++++|+++|++.+.||++.+++++..+ +++.++|+|.+.....+...+.. .++.+.|.++.+++..+|
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 90 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELY 90 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccccc
Confidence 346788999999999999999999999865 68999999988777666665543 379999999989999999
Q ss_pred hcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHH
Q 017114 241 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 320 (377)
Q Consensus 241 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 320 (377)
+.||++++||..|++|.+++|||++|+|||+++.++..+++ .++.+|+++++.|+++++++|.+++++++.++.|++
T Consensus 91 ~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~---~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~ 167 (172)
T PF00534_consen 91 KSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEII---NDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGK 167 (172)
T ss_dssp HHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHS---GTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeccccccccccccccccccccccceeeccccCCceee---ccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 888899999999999999999999999999999999
Q ss_pred HHHHH
Q 017114 321 AARQE 325 (377)
Q Consensus 321 ~~~~~ 325 (377)
+++++
T Consensus 168 ~~~~~ 172 (172)
T PF00534_consen 168 NARER 172 (172)
T ss_dssp HHHHH
T ss_pred HhcCC
Confidence 99874
No 81
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.2e-23 Score=184.75 Aligned_cols=291 Identities=22% Similarity=0.269 Sum_probs=211.0
Q ss_pred CCCEEEeCCCchhHHHHHHHHH----hhCCCEEEEeccCCccccccccc----ccchh----------hHHHHHHHHHhc
Q 017114 55 KPDIIHASSPGIMVFGALIIAK----LLCVPIVMSYHTHVPVYIPRYTF----SWLVK----------PMWLVIKFLHRA 116 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~----~~~~~~i~~~h~~~~~~~~~~~~----~~~~~----------~~~~~~~~~~~~ 116 (377)
.|||||+|+++....+++ ++. ...+|.|+|+|+........... ..... ....+.+..+..
T Consensus 130 ~pDIvH~hDWqt~L~~~~-lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ 208 (487)
T COG0297 130 LPDIVHAHDWQTGLLPAY-LKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYY 208 (487)
T ss_pred CCCEEEeecHHHHHHHHH-HhhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhhee
Confidence 699999999876655544 444 45789999999743221111000 00000 112456777889
Q ss_pred CCeeEecChhHHHHHHHh-c--------ccCCCcEEEecCCCCCCCCCCccCc------------------hHHHHHhhC
Q 017114 117 ADLTLVPSVAIGKDLEAA-R--------VTAANKIRIWKKGVDSESFHPRFRS------------------SEMRWRLSN 169 (377)
Q Consensus 117 ~d~ii~~s~~~~~~~~~~-~--------~~~~~~i~~i~~gv~~~~~~~~~~~------------------~~~~~~~~~ 169 (377)
+|.+.++|+...+.+..- + .....++.-|-||+|.+.+.|.... .....++..
T Consensus 209 ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL 288 (487)
T COG0297 209 ADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGL 288 (487)
T ss_pred ccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCC
Confidence 999999999998877611 1 1123567889999999988776543 011222233
Q ss_pred C-CCCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCc--cHHHHHHhhcCC--CEEEccccCchhHHHHHhc
Q 017114 170 G-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVFTGMLLGEELSQAYAS 242 (377)
Q Consensus 170 ~-~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~--~~~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~ 242 (377)
. ..+.+.+.++||+..+||++.+++++..+ ..+++++.|.|+ ..+.+..+.+.. ++......+..-...+++.
T Consensus 289 ~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~ag 368 (487)
T COG0297 289 DVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAG 368 (487)
T ss_pred CCCCCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhc
Confidence 2 23668999999999999999999999877 468999999883 345555555533 3555555555566789999
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcccccc-----CCCCeeEEeCCCCHHHHHHHHHHHhh---CHHH
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED-----QDGKIGYLFNPGDLDDCLSKLEPLLY---NQEL 314 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~l~~~i~~~~~---~~~~ 314 (377)
||++++||++|++|++-++||..|+++|+..+||..+.+... +...+|+++.+.++++++.+|.+.+. ++..
T Consensus 369 aD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~ 448 (487)
T COG0297 369 ADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPL 448 (487)
T ss_pred CCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHH
Confidence 999999999999999999999999999999999999988321 12579999999999999999998765 3333
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017114 315 -RETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 349 (377)
Q Consensus 315 -~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~ 349 (377)
.+.+..++.. ..|+|+..++++. ++|+.+++.
T Consensus 449 ~w~~~~~~~m~--~d~sw~~sa~~y~-~lY~~~~~~ 481 (487)
T COG0297 449 LWRKVQPNAMG--ADFSWDLSAKEYV-ELYKPLLSK 481 (487)
T ss_pred HHHHHHHhhcc--cccCchhHHHHHH-HHHHHHhcc
Confidence 5555555444 5799999999999 799998754
No 82
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.91 E-value=1e-22 Score=180.97 Aligned_cols=277 Identities=19% Similarity=0.174 Sum_probs=188.3
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHH-HHHhcCCee
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIK-FLHRAADLT 120 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i 120 (377)
....++.+.+++.+||+||+|+.....+++.++++..|+|++...++.... ... ..+. ....+ .+.+.+|.+
T Consensus 73 ~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~s~--~~~-~~~~----~~~~r~~~~~~ad~~ 145 (365)
T TIGR00236 73 NMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRTG--DRY-SPMP----EEINRQLTGHIADLH 145 (365)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCCcC--CCC-CCCc----cHHHHHHHHHHHHhc
Confidence 345678899999999999999876666777778899999987543332110 000 0000 01122 334568999
Q ss_pred EecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCc-cCchHHHHHhhCCCCCCCeEEEee-cc-cccccHHHHHHHH
Q 017114 121 LVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPR-FRSSEMRWRLSNGEPDKPLIVHVG-RL-GVEKSLDFLKRVM 196 (377)
Q Consensus 121 i~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~G-~~-~~~k~~~~l~~a~ 196 (377)
++.|+..++.+.+.+ .+++++.+++|++ |....... ......+.++ .. ++.++++.| +. ...|+++.+++++
T Consensus 146 ~~~s~~~~~~l~~~G-~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~--~~-~~~~vl~~~hr~~~~~k~~~~ll~a~ 221 (365)
T TIGR00236 146 FAPTEQAKDNLLREN-VKADSIFVTGNTVIDALLTNVEIAYSSPVLSEF--GE-DKRYILLTLHRRENVGEPLENIFKAI 221 (365)
T ss_pred cCCCHHHHHHHHHcC-CCcccEEEeCChHHHHHHHHHhhccchhHHHhc--CC-CCCEEEEecCchhhhhhHHHHHHHHH
Confidence 999999999998875 5778999999996 43221111 1112223233 22 334555555 33 2458899999998
Q ss_pred HhC----CCceEEEEecC-c-cHHHHHHhhc-CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 197 DRL----PEARIAFIGDG-P-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 197 ~~l----~~~~l~i~G~g-~-~~~~l~~~~~-~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
+.+ +++++++.|.+ + ..+.+.+... ..+|.+.|.++..++..+++.||+++.+| |..++|||+||+||
T Consensus 222 ~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~Pv 296 (365)
T TIGR00236 222 REIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPV 296 (365)
T ss_pred HHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCE
Confidence 876 57888887643 2 2223333322 24799999998899999999999999877 56689999999999
Q ss_pred EEe-cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 270 VGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 270 I~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
|++ +.++.++.+ ..+ .+.++ +.|++++++++.++++|++.+++++++...+.+..+++.+++.+.
T Consensus 297 I~~~~~~~~~e~~---~~g-~~~lv-~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 297 LVLRDTTERPETV---EAG-TNKLV-GTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELL 362 (365)
T ss_pred EECCCCCCChHHH---hcC-ceEEe-CCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHH
Confidence 996 667778877 545 45555 469999999999999999888888766533333445555555544
No 83
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.91 E-value=2.7e-22 Score=178.75 Aligned_cols=278 Identities=17% Similarity=0.106 Sum_probs=204.1
Q ss_pred CCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhc
Q 017114 56 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR 135 (377)
Q Consensus 56 pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 135 (377)
-|+|++|+.+.+.++.++-.+..+.++-+..|..+|....-....+.. .+. ..+-.+|.|-+.+....+.|.+.-
T Consensus 133 ~d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~----~ll-~glL~aDliGFqt~~y~~~Fl~~~ 207 (487)
T TIGR02398 133 GATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTPFPSADVFNILPWRE----QII-GSLLCCDYIGFHIPRYVENFVDAA 207 (487)
T ss_pred CCEEEEecchhhHHHHHHHHhCCCCeEEEEeeCCCCChHHHhhCCchH----HHH-HHHhcCCeEEeCCHHHHHHHHHHH
Confidence 389999998888777776556667789999999887643222211111 122 233469999999888887776521
Q ss_pred ----c--------------------------------cCCCcEEEecCCCCCCCCCCccCch---HHHHHhhCCCCCCCe
Q 017114 136 ----V--------------------------------TAANKIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPL 176 (377)
Q Consensus 136 ----~--------------------------------~~~~~i~~i~~gv~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 176 (377)
+ ...-.+.++|.|+|.+.|.+..... +....+.....++.+
T Consensus 208 ~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~~~ki 287 (487)
T TIGR02398 208 RGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSELAGVKL 287 (487)
T ss_pred HHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcCCceE
Confidence 0 0112378999999999885542221 111111112236789
Q ss_pred EEEeecccccccHHHHHHHHHhC----CC----ceEEEEecCc---------cHHHHHHhhcCC-----------CEEEc
Q 017114 177 IVHVGRLGVEKSLDFLKRVMDRL----PE----ARIAFIGDGP---------YREELEKMFTGM-----------PAVFT 228 (377)
Q Consensus 177 i~~~G~~~~~k~~~~l~~a~~~l----~~----~~l~i~G~g~---------~~~~l~~~~~~~-----------~v~~~ 228 (377)
|+.++|+++.||+...++|++++ |+ +.|+++|.+. ...++++++.+. -+.+.
T Consensus 288 Il~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~ 367 (487)
T TIGR02398 288 ILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFT 367 (487)
T ss_pred EEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEc
Confidence 99999999999999999999876 54 6888888542 233444433322 15678
Q ss_pred cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCC----CeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHH
Q 017114 229 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 304 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~----PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 304 (377)
+.++.+++..+|+.||+++.++..||++++..||++|+. |+|.|..+|..+.+ ..+++++|.|+++++++
T Consensus 368 ~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l------~~AllVNP~d~~~~A~a 441 (487)
T TIGR02398 368 RSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL------KGALLTNPYDPVRMDET 441 (487)
T ss_pred CCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhhc------CCCEEECCCCHHHHHHH
Confidence 999999999999999999999999999999999999998 99999999887665 24799999999999999
Q ss_pred HHHHhhC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017114 305 LEPLLYN-QELRETMGQAARQEMEKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 305 i~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~ 344 (377)
|.++++. .+++++.-+..++.+.+++....++.+++++..
T Consensus 442 i~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 442 IYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAVSP 482 (487)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhh
Confidence 9999995 446666666677778889999999999866643
No 84
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.90 E-value=3.7e-22 Score=165.84 Aligned_cols=181 Identities=36% Similarity=0.555 Sum_probs=136.3
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEec
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
...+.+.+++.+||+||++++...........+..++|++++.|+.++........ .+.......++..
T Consensus 40 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~--------~~~~~~~~~~~~~--- 108 (229)
T cd01635 40 LLLLLRILRGFKPDVVHAHGYYPAPLALLLAARLLGIPLVLTVHGVNRSLLEGVPL--------SLLALSIGLADKV--- 108 (229)
T ss_pred hHHHHHHHhhcCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEcCccHhhcccCcH--------HHHHHHHhhcceE---
Confidence 35566777788999999999766554444566778999999999987654322110 0011111111111
Q ss_pred ChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----
Q 017114 124 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---- 199 (377)
Q Consensus 124 s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l---- 199 (377)
|+|++.+.||++.+++++..+
T Consensus 109 -------------------------------------------------------~~g~~~~~k~~~~~~~a~~~l~~~~ 133 (229)
T cd01635 109 -------------------------------------------------------FVGRLAPEKGLDDLIEAFALLKERG 133 (229)
T ss_pred -------------------------------------------------------EEEeecccCCHHHHHHHHHHHHHhC
Confidence 999999999999999999887
Q ss_pred CCceEEEEecCccHHHHHH----hhcCCCEEEccccCc-hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecC
Q 017114 200 PEARIAFIGDGPYREELEK----MFTGMPAVFTGMLLG-EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 274 (377)
Q Consensus 200 ~~~~l~i~G~g~~~~~l~~----~~~~~~v~~~g~~~~-~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 274 (377)
++++++++|.+.......+ .....+|.+.|+++. +++..+++.||+++.|+..|++|++++|||++|+|+|+++.
T Consensus 134 ~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~ 213 (229)
T cd01635 134 PDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDV 213 (229)
T ss_pred CCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCC
Confidence 3799999998876665543 222447999999855 55666666699999999999999999999999999999999
Q ss_pred CCCCccccccCCCCeeEEe
Q 017114 275 GGIPDIIPEDQDGKIGYLF 293 (377)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~ 293 (377)
++..+++ .++++|+++
T Consensus 214 ~~~~e~i---~~~~~g~~~ 229 (229)
T cd01635 214 GGPPEIV---EDGLTGLLV 229 (229)
T ss_pred CCcceEE---ECCCceEEC
Confidence 9999988 778888764
No 85
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.90 E-value=1.5e-22 Score=180.26 Aligned_cols=259 Identities=16% Similarity=0.144 Sum_probs=179.9
Q ss_pred cccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCe
Q 017114 40 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 119 (377)
Q Consensus 40 ~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 119 (377)
.......+.+.+++.+||+||+|+.....+++..+++..++|++...++...... .. . .......+.+.+|.
T Consensus 73 ~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~s~~~-~~----~---~~~~r~~~~~~ad~ 144 (363)
T cd03786 73 TAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLRSFDR-GM----P---DEENRHAIDKLSDL 144 (363)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecccccCCC-CC----C---chHHHHHHHHHhhh
Confidence 3445677888899999999999986555666677888899998865554322100 00 0 01122345678999
Q ss_pred eEecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCccCchH-HHHHhhCCCCCCCeEEEeecccc---cccHHHHHH
Q 017114 120 TLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSE-MRWRLSNGEPDKPLIVHVGRLGV---EKSLDFLKR 194 (377)
Q Consensus 120 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~G~~~~---~k~~~~l~~ 194 (377)
+++.++..++.+.+.+ .+.+++.+++|++ |...+.+...... .+..... .+++.++++.|+... .|+++.+++
T Consensus 145 ~~~~s~~~~~~l~~~G-~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~vlv~~~r~~~~~~~k~~~~l~~ 222 (363)
T cd03786 145 HFAPTEEARRNLLQEG-EPPERIFVVGNTMIDALLRLLELAKKELILELLGL-LPKKYILVTLHRVENVDDGEQLEEILE 222 (363)
T ss_pred ccCCCHHHHHHHHHcC-CCcccEEEECchHHHHHHHHHHhhccchhhhhccc-CCCCEEEEEeCCccccCChHHHHHHHH
Confidence 9999999999998876 4778999999986 4322221111111 1122222 334556778888764 799999999
Q ss_pred HHHhCC--CceEEEEecCccHHHHHHhhc-----CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCC
Q 017114 195 VMDRLP--EARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI 267 (377)
Q Consensus 195 a~~~l~--~~~l~i~G~g~~~~~l~~~~~-----~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~ 267 (377)
+++.+. ++.+++.|+++..+.+++... ..++.+.|+...+++..+|+.||++|.+|. ....|||++|+
T Consensus 223 al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg-----gi~~Ea~~~g~ 297 (363)
T cd03786 223 ALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG-----GIQEEASFLGV 297 (363)
T ss_pred HHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc-----cHHhhhhhcCC
Confidence 998874 366666677666666666543 357999998888999999999999999984 35789999999
Q ss_pred CeEEecC-CCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHH
Q 017114 268 PVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 318 (377)
Q Consensus 268 PvI~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 318 (377)
|+|+++. +...+.+ +++ .+..+. .|++++++++.++++++..+..|
T Consensus 298 PvI~~~~~~~~~~~~---~~g-~~~~~~-~~~~~i~~~i~~ll~~~~~~~~~ 344 (363)
T cd03786 298 PVLNLRDRTERPETV---ESG-TNVLVG-TDPEAILAAIEKLLSDEFAYSLM 344 (363)
T ss_pred CEEeeCCCCccchhh---hee-eEEecC-CCHHHHHHHHHHHhcCchhhhcC
Confidence 9999864 3344554 322 333332 36999999999999988776555
No 86
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.2e-21 Score=154.49 Aligned_cols=331 Identities=17% Similarity=0.222 Sum_probs=232.0
Q ss_pred CCcEEEEEeeCCCCCc----cccCceeecccCCCCCc-cccc-cccccchH----HHHHHHHhcCCCEEEeCCCchhH--
Q 017114 1 MGDEVMVVTTHEGVPQ----EFYGAKLIGSRSFPCPW-YQKV-PLSLALSP----RIISEVARFKPDIIHASSPGIMV-- 68 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~----~~~~~i~~~~pDii~~~~~~~~~-- 68 (377)
+|++|+++...+..+. ..++++++++...+.-. ..+. ...+..+. -++.++....+|+|.+.+|+...
T Consensus 39 ~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtl 118 (444)
T KOG2941|consen 39 LGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLPFLQGGPRVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTL 118 (444)
T ss_pred cCCeEEEEEecCCCChHHHhcCCceEEEeCCCCcccCCCchhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchH
Confidence 4899999987654322 35667777776654221 1111 11122222 22333445689999999975443
Q ss_pred HHHHHHHHhhCCCEEEEeccCCccc---ccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEe
Q 017114 69 FGALIIAKLLCVPIVMSYHTHVPVY---IPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIW 145 (377)
Q Consensus 69 ~~~~~~~~~~~~~~i~~~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i 145 (377)
+.+.++....|.+++++.|++.... ........+-+..++.++++-+.||.-+|+++.+++.+.+..+.. +..++
T Consensus 119 iv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~--ra~v~ 196 (444)
T KOG2941|consen 119 IVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKLADYNLCVTKAMREDLIQNWGIN--RAKVL 196 (444)
T ss_pred HHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcccccchhhHHHHHHHHHHhcCCc--eeEEE
Confidence 3455567889999999999975431 122233455667788999999999999999999999988887643 34444
Q ss_pred cCCCC-----CCC----CCCcc----------Cc-hH-----HHHHh-----hCCCCCCCeEEEeecccccccHHHHHHH
Q 017114 146 KKGVD-----SES----FHPRF----------RS-SE-----MRWRL-----SNGEPDKPLIVHVGRLGVEKSLDFLKRV 195 (377)
Q Consensus 146 ~~gv~-----~~~----~~~~~----------~~-~~-----~~~~~-----~~~~~~~~~i~~~G~~~~~k~~~~l~~a 195 (377)
+.-.. .+. |.+.. .+ ++ .-.+. ....+...+++...++.+..++..+++|
T Consensus 197 YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~A 276 (444)
T KOG2941|consen 197 YDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEA 276 (444)
T ss_pred ecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHH
Confidence 42211 100 11100 00 00 00011 1112334456667788999999999999
Q ss_pred HHhC-----------CCceEEEEecCccHHHHHHhhcCCC---EE-EccccCchhHHHHHhcCCEEEeccC---Ccccch
Q 017114 196 MDRL-----------PEARIAFIGDGPYREELEKMFTGMP---AV-FTGMLLGEELSQAYASGDVFVMPSE---SETLGL 257 (377)
Q Consensus 196 ~~~l-----------~~~~l~i~G~g~~~~~l~~~~~~~~---v~-~~g~~~~~~~~~~~~~adi~v~ps~---~e~~~~ 257 (377)
+... |..-.+|.|.||..+...+.+++.+ |. ...|+.-+|.+.+++.||++|.... .-..|+
T Consensus 277 L~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPM 356 (444)
T KOG2941|consen 277 LVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPM 356 (444)
T ss_pred HHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcch
Confidence 9833 5677888999999999999888764 33 4678888999999999999887432 345799
Q ss_pred HHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHhcCHHH
Q 017114 258 VVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY----NQELRETMGQAARQEMEKYDWRA 333 (377)
Q Consensus 258 ~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~s~~~ 333 (377)
++.+...||+||++.+...+.|++ +++.||++++ |.+++++.++.+.. +.+...++.+++++. +...|+.
T Consensus 357 KVVDMFGcglPvcA~~fkcl~ELV---kh~eNGlvF~--Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~-~e~RW~~ 430 (444)
T KOG2941|consen 357 KVVDMFGCGLPVCAVNFKCLDELV---KHGENGLVFE--DSEELAEQLQMLFKNFPDNADELNQLKKNLREE-QELRWDE 430 (444)
T ss_pred hHHHhhcCCCceeeecchhHHHHH---hcCCCceEec--cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH-HhhhHHH
Confidence 999999999999999999999999 9999999998 89999999999998 788889998888887 4566666
Q ss_pred HHHHHH
Q 017114 334 ATRTIR 339 (377)
Q Consensus 334 ~~~~~~ 339 (377)
..++..
T Consensus 431 ~W~~~~ 436 (444)
T KOG2941|consen 431 SWERTA 436 (444)
T ss_pred HHHHhh
Confidence 655544
No 87
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.89 E-value=9.6e-22 Score=176.01 Aligned_cols=259 Identities=16% Similarity=0.128 Sum_probs=171.8
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCee
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 120 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 120 (377)
.....++.+.+++.+||+||+++...........++..++|+++..+.... .+.. ...+.+.+.+|.+
T Consensus 71 ~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~--------~~~~----~~~~~~~~~~d~i 138 (380)
T PRK00025 71 LKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW--------AWRQ----GRAFKIAKATDHV 138 (380)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh--------hcCc----hHHHHHHHHHhhh
Confidence 445567889999999999999864222222223456679999876554210 0111 1123357889999
Q ss_pred EecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCe-EEEeecc-ccc-ccHHHHHHHHH
Q 017114 121 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPL-IVHVGRL-GVE-KSLDFLKRVMD 197 (377)
Q Consensus 121 i~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~G~~-~~~-k~~~~l~~a~~ 197 (377)
++.++...+.+.+.+. ++.+++|++...... .......+..+.. +++.++ +++.|+- ... +.++.++++++
T Consensus 139 ~~~~~~~~~~~~~~g~----~~~~~G~p~~~~~~~-~~~~~~~~~~l~~-~~~~~~il~~~gsr~~~~~~~~~~l~~a~~ 212 (380)
T PRK00025 139 LALFPFEAAFYDKLGV----PVTFVGHPLADAIPL-LPDRAAARARLGL-DPDARVLALLPGSRGQEIKRLLPPFLKAAQ 212 (380)
T ss_pred eeCCccCHHHHHhcCC----CeEEECcCHHHhccc-ccChHHHHHHcCC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999998888876542 366777766433221 1122334444443 234454 4555533 333 44678888776
Q ss_pred hC----CCceEEEEec-CccHHHHHHhhcCC---CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 198 RL----PEARIAFIGD-GPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 198 ~l----~~~~l~i~G~-g~~~~~l~~~~~~~---~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
.+ ++++++++|+ +...+.+++...+. ++.+. .+++..+|+.||++|.+| |.+.+|||++|+|+
T Consensus 213 ~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~Pv 283 (380)
T PRK00025 213 LLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLL----DGQKREAMAAADAALAAS-----GTVTLELALLKVPM 283 (380)
T ss_pred HHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEE----cccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCE
Confidence 55 5788999875 55666677665543 34332 358999999999999987 78888999999999
Q ss_pred EEe-----------------cCCCCCccccccCCC--CeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhc
Q 017114 270 VGV-----------------RAGGIPDIIPEDQDG--KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKY 329 (377)
Q Consensus 270 I~~-----------------~~~~~~~~~~~~~~~--~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 329 (377)
|+. +.+++++++ .++ ..+++.+..|++++++++.++++|++.+++|++++++..+..
T Consensus 284 I~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 284 VVGYKVSPLTFWIAKRLVKVPYVSLPNLL---AGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred EEEEccCHHHHHHHHHHHcCCeeehHHHh---cCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 976 233445655 333 244666777999999999999999999999999886665543
No 88
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.88 E-value=2.8e-21 Score=168.69 Aligned_cols=285 Identities=19% Similarity=0.212 Sum_probs=201.1
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHhhC----CCEEEEeccCCcccccc--cccccchhhHHHHHHHHHhcCCeeEecChhH
Q 017114 54 FKPDIIHASSPGIMVFGALIIAKLLC----VPIVMSYHTHVPVYIPR--YTFSWLVKPMWLVIKFLHRAADLTLVPSVAI 127 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 127 (377)
.+.|+|++.... ....+.....+ ..+.++.|......... ....+.+..+.+++......+|.+++.+...
T Consensus 144 ~~~d~~i~d~~~---~~~~l~~~~~~p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~ 220 (495)
T KOG0853|consen 144 EKVDPIIEDFVS---ACVPLLKQLSGPDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFT 220 (495)
T ss_pred hhhceeecchHH---HHHHHHHHhcCCcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhh
Confidence 567888776531 22222333332 45666777644333322 2334445556667777788899999999999
Q ss_pred HHHHHHhcc-cCCCcEEEecCCCCCCCCCCccCchHHHHHh----hCC-CCCCCeEEEeecccccccHHHHHHHHHhC--
Q 017114 128 GKDLEAARV-TAANKIRIWKKGVDSESFHPRFRSSEMRWRL----SNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL-- 199 (377)
Q Consensus 128 ~~~~~~~~~-~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~----~~~-~~~~~~i~~~G~~~~~k~~~~l~~a~~~l-- 199 (377)
...++.... .....+.+.+.++|.+.+.+.........+. ... ...+..+.-+-++.+.|+++.+++++..+
T Consensus 221 ~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~ 300 (495)
T KOG0853|consen 221 KRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHD 300 (495)
T ss_pred hhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhc
Confidence 988887754 2334478888888877665422111111111 001 12245566677889999999999998766
Q ss_pred -------CCceEEEEecC----------ccHHHHHHhhcCC-----CEEEccccCchhHHHHHhcCCEEEeccCCcccch
Q 017114 200 -------PEARIAFIGDG----------PYREELEKMFTGM-----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 257 (377)
Q Consensus 200 -------~~~~l~i~G~g----------~~~~~l~~~~~~~-----~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~ 257 (377)
++.++.++|+. .+.+++.+++++. .+.|....++.+...+++.+.+.+.....|.||.
T Consensus 301 ~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGi 380 (495)
T KOG0853|consen 301 SIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGI 380 (495)
T ss_pred ccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccc
Confidence 23577778732 1344555565544 3677777777777777777777666555699999
Q ss_pred HHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHH---HHHHHHHHHhhCHHHHHHHHHHHHHHHH-hcCHHH
Q 017114 258 VVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLD---DCLSKLEPLLYNQELRETMGQAARQEME-KYDWRA 333 (377)
Q Consensus 258 ~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~s~~~ 333 (377)
+++|||+||+|||+++.||..|++ .++.+|+++++ +.+ .+++++.++..|++++.+|++++++.++ .|+|..
T Consensus 381 v~IEAMa~glPvvAt~~GGP~EiV---~~~~tG~l~dp-~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~ 456 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGGPAEIV---VHGVTGLLIDP-GQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQH 456 (495)
T ss_pred eeHHHHhcCCCEEEecCCCceEEE---EcCCcceeeCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999 99999999999 555 6999999999999999999999999996 599988
Q ss_pred HHHHHHHHHHHHH
Q 017114 334 ATRTIRNEQYNAA 346 (377)
Q Consensus 334 ~~~~~~~~ly~~~ 346 (377)
+.+++.+ +-...
T Consensus 457 ~~~ri~~-~~~~~ 468 (495)
T KOG0853|consen 457 YSERIAS-VLGKY 468 (495)
T ss_pred HHHHHHH-HhHhc
Confidence 8888884 44433
No 89
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.88 E-value=2.1e-20 Score=152.34 Aligned_cols=283 Identities=15% Similarity=0.208 Sum_probs=205.3
Q ss_pred HHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccc-----cc--------cccccchhhHHHHHHHHH
Q 017114 48 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI-----PR--------YTFSWLVKPMWLVIKFLH 114 (377)
Q Consensus 48 ~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~ 114 (377)
.+.+-+..|||.+=.-..++.++. .++..++|++...|-..-... .. +..-.+.+.+..+...+-
T Consensus 143 ~Eai~r~~Pdi~IDtMGY~fs~p~--~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G 220 (465)
T KOG1387|consen 143 FEAIIRFPPDIFIDTMGYPFSYPI--FRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAG 220 (465)
T ss_pred HHHHHhCCchheEecCCCcchhHH--HHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 345556799988766555555543 445789999999996432210 00 111112233344455566
Q ss_pred hcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHH
Q 017114 115 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 194 (377)
Q Consensus 115 ~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 194 (377)
..||.+++.|.+....+.+.... ..+.+++++.+.+.+... ......+.+.++++|.+.|+|+.. +++
T Consensus 221 ~~ad~vm~NssWT~nHI~qiW~~--~~~~iVyPPC~~e~lks~---------~~te~~r~~~ll~l~Q~RPEKnH~-~Lq 288 (465)
T KOG1387|consen 221 SKADIVMTNSSWTNNHIKQIWQS--NTCSIVYPPCSTEDLKSK---------FGTEGERENQLLSLAQFRPEKNHK-ILQ 288 (465)
T ss_pred ccceEEEecchhhHHHHHHHhhc--cceeEEcCCCCHHHHHHH---------hcccCCcceEEEEEeecCcccccH-HHH
Confidence 78999999999999999998763 566777777766533222 211244667899999999999998 444
Q ss_pred HHHhC----------CCceEEEEecCc---cHH---HHHHhhcCC----CEEEccccCchhHHHHHhcCCEEEeccCCcc
Q 017114 195 VMDRL----------PEARIAFIGDGP---YRE---ELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESET 254 (377)
Q Consensus 195 a~~~l----------~~~~l~i~G~g~---~~~---~l~~~~~~~----~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~ 254 (377)
..... ++++|+++|+.. +.+ .++.++.+. +|.|.-.+|.+++..+|..|.+.|.....|.
T Consensus 289 l~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEH 368 (465)
T KOG1387|consen 289 LFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEH 368 (465)
T ss_pred HHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhh
Confidence 33221 468999999543 222 333334332 6999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCCeEEecCCC-CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCHH
Q 017114 255 LGLVVLEAMSSGIPVVGVRAGG-IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWR 332 (377)
Q Consensus 255 ~~~~~~Ea~a~G~PvI~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~s~~ 332 (377)
||..+.||||+|+-+|+.+.|| .-+++.......+|++.+ +.++.++++.+++. +++.+..++++||..+.+|+-.
T Consensus 369 FGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~--t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~ 446 (465)
T KOG1387|consen 369 FGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP--TDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL 446 (465)
T ss_pred cchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC--ChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999888887665 456665544556899886 78999999999987 7888999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 017114 333 AATRTIRNEQYNAAI 347 (377)
Q Consensus 333 ~~~~~~~~~ly~~~~ 347 (377)
.+.+.+.+ .+..++
T Consensus 447 ~F~kd~~~-~i~kll 460 (465)
T KOG1387|consen 447 KFDKDWEN-PICKLL 460 (465)
T ss_pred HHHHhHhH-HHHHhh
Confidence 99999984 555554
No 90
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.87 E-value=1.4e-20 Score=178.33 Aligned_cols=283 Identities=17% Similarity=0.170 Sum_probs=204.7
Q ss_pred cCC-CEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHH
Q 017114 54 FKP-DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 132 (377)
Q Consensus 54 ~~p-Dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 132 (377)
.++ |+|++|+++.+.++.++-.+....++-+.+|..+|.........+.. .+. ..+-.||.|-+.+......|.
T Consensus 229 ~~~gD~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r~----elL-~glL~aDlIGFqT~~y~rhFl 303 (934)
T PLN03064 229 YEEGDVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSRS----ELL-RSVLAADLVGFHTYDYARHFV 303 (934)
T ss_pred cCCCCEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCcHH----HHH-HHHhcCCeEEeCCHHHHHHHH
Confidence 344 79999998888888777666678899999999887643222222111 122 233469999999998888776
Q ss_pred Hhc----cc-----------CCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEeecccccccHHHHHH
Q 017114 133 AAR----VT-----------AANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 194 (377)
Q Consensus 133 ~~~----~~-----------~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 194 (377)
+.- +. ...++.++|.|+|.+.|.......+ ....+.....++.+|+.++++++.||+...++
T Consensus 304 ~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~g~kiIlgVDRLD~~KGI~~kL~ 383 (934)
T PLN03064 304 SACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFAGRKVMLGVDRLDMIKGIPQKIL 383 (934)
T ss_pred HHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhCCceEEEEeeccccccCHHHHHH
Confidence 521 00 1123667899999988764422221 11111112236779999999999999999999
Q ss_pred HHHhC----CCce--EEEE-------ecCccHHHHHHhh----cCCC----------EEE-ccccCchhHHHHHhcCCEE
Q 017114 195 VMDRL----PEAR--IAFI-------GDGPYREELEKMF----TGMP----------AVF-TGMLLGEELSQAYASGDVF 246 (377)
Q Consensus 195 a~~~l----~~~~--l~i~-------G~g~~~~~l~~~~----~~~~----------v~~-~g~~~~~~~~~~~~~adi~ 246 (377)
|++.+ |+++ ++++ ++++..+.++..+ .+.| |.+ ...++.+++..+|+.||++
T Consensus 384 AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~ 463 (934)
T PLN03064 384 AFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVA 463 (934)
T ss_pred HHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEE
Confidence 98864 6543 5554 3444444433322 2222 443 3448889999999999999
Q ss_pred EeccCCcccchHHHHHHhcCC----CeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHH
Q 017114 247 VMPSESETLGLVVLEAMSSGI----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQA 321 (377)
Q Consensus 247 v~ps~~e~~~~~~~Ea~a~G~----PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~ 321 (377)
+++|..||++++..|||+|+. ++|.|...|..+.+ +..+++++|.|+++++++|.+++. ++++++.+.+.
T Consensus 464 lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L-----~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~ 538 (934)
T PLN03064 464 LVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL-----GAGAILVNPWNITEVAASIAQALNMPEEEREKRHRH 538 (934)
T ss_pred EeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh-----CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999954 44558888888777 456899999999999999999998 88899999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH
Q 017114 322 ARQEMEKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 322 ~~~~~~~~s~~~~~~~~~~~ly~~~ 346 (377)
.++.+..+++..+++.+++.+.+..
T Consensus 539 ~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 539 NFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHhhcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999997676543
No 91
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=3.7e-19 Score=157.90 Aligned_cols=278 Identities=38% Similarity=0.585 Sum_probs=200.3
Q ss_pred CCEEEeCCCchhHH--HHHHHHHhhCCCEEEEeccCCcccccccccccchhh---HHHHHHHHHh-cCCeeEecChhHHH
Q 017114 56 PDIIHASSPGIMVF--GALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKP---MWLVIKFLHR-AADLTLVPSVAIGK 129 (377)
Q Consensus 56 pDii~~~~~~~~~~--~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~d~ii~~s~~~~~ 129 (377)
+|+++.+....... .........+.+.+...|.................. .......... ..+.++..+.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (381)
T COG0438 84 YDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKE 163 (381)
T ss_pred cceeeccccccccchhHHHhhccccCCcEEEeecCCcccccccccchhhHHHHHHHHHHHHHhccccccEEEECCHHHHH
Confidence 59999876433322 233355566778888888865432211111111111 1111111112 47888888888766
Q ss_pred HHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCC-CCeEEEeecccccccHHHHHHHHHhCCC----ceE
Q 017114 130 DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPD-KPLIVHVGRLGVEKSLDFLKRVMDRLPE----ARI 204 (377)
Q Consensus 130 ~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~G~~~~~k~~~~l~~a~~~l~~----~~l 204 (377)
.+..... ..++.+++++++.+.+...... ..... ...++++|++.+.||++.++++++.+++ +.+
T Consensus 164 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~ 233 (381)
T COG0438 164 LLEALGV--PNKIVVIPNGIDTEKFAPARIG--------LLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKL 233 (381)
T ss_pred HHHHhCC--CCCceEecCCcCHHHcCccccC--------CCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEE
Confidence 6666543 3378899999998877642000 01112 3789999999999999999999998843 789
Q ss_pred EEEecCccH-HHHHHhhc----CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCc
Q 017114 205 AFIGDGPYR-EELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 205 ~i~G~g~~~-~~l~~~~~----~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~ 279 (377)
.++|.++.. +.+..... ..++.+.|.++.+++..+++.||++++|+..|++|.+++|||++|+|||+++.++..+
T Consensus 234 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e 313 (381)
T COG0438 234 VIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPE 313 (381)
T ss_pred EEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHH
Confidence 999988652 33333333 3479999999878888899999999999988999999999999999999999999999
Q ss_pred cccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Q 017114 280 IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAI 347 (377)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~ 347 (377)
.+ .++..|+++.+.+.+++++++..++++.+.++.+.+.+++.+ +.|+|+..++++. .++....
T Consensus 314 ~~---~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 378 (381)
T COG0438 314 VV---EDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLL-ELYEELL 378 (381)
T ss_pred Hh---cCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHH
Confidence 99 666567777777899999999999999887888887666665 5899999999988 5776654
No 92
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.81 E-value=1.7e-17 Score=152.73 Aligned_cols=294 Identities=17% Similarity=0.158 Sum_probs=203.3
Q ss_pred HHHHHHHh--cCCCEEEeCCCchhHHHHHHHHHh-------------hCCCEEEEeccCCcccccccccccchh------
Q 017114 46 RIISEVAR--FKPDIIHASSPGIMVFGALIIAKL-------------LCVPIVMSYHTHVPVYIPRYTFSWLVK------ 104 (377)
Q Consensus 46 ~~~~~i~~--~~pDii~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~h~~~~~~~~~~~~~~~~~------ 104 (377)
...+.++. .+||+||+|.+++...+..+.... .+..+++|.|+..+.....+......+
T Consensus 150 a~l~~l~~l~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~ 229 (601)
T TIGR02094 150 GGVRALRALGIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYA 229 (601)
T ss_pred HHHHHHHHcCCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhh
Confidence 33445544 589999999976654443321110 146789999986655321111111100
Q ss_pred ---------------------hHHHHHHHHHhcCCeeEecChhHHHHHHHhcc-------cCCCcEEEecCCCCCCCCCC
Q 017114 105 ---------------------PMWLVIKFLHRAADLTLVPSVAIGKDLEAARV-------TAANKIRIWKKGVDSESFHP 156 (377)
Q Consensus 105 ---------------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-------~~~~~i~~i~~gv~~~~~~~ 156 (377)
..-.+.+..+..||.+.++|+...+..+.... ....++.-|-||+|...+.+
T Consensus 230 ~~~gl~~~~~~~~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~ 309 (601)
T TIGR02094 230 ANLGLPREQLLALGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVA 309 (601)
T ss_pred hHhCCCHHHHHhhhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCC
Confidence 01256777889999999999988874443221 11345788999999988765
Q ss_pred ccCch------------------------------------HHHHHhhC--------------------------CCCCC
Q 017114 157 RFRSS------------------------------------EMRWRLSN--------------------------GEPDK 174 (377)
Q Consensus 157 ~~~~~------------------------------------~~~~~~~~--------------------------~~~~~ 174 (377)
..... ..+.++.. ..++.
T Consensus 310 ~~~~~l~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~ 389 (601)
T TIGR02094 310 PELRDLYERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDV 389 (601)
T ss_pred HHHHHHHHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCC
Confidence 32110 00111111 24567
Q ss_pred CeEEEeecccccccHHHHHHHHHhC--------CCceEEEEecCc--------cHHHHHHhhcC--C--CEEEccccCch
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRL--------PEARIAFIGDGP--------YREELEKMFTG--M--PAVFTGMLLGE 234 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l--------~~~~l~i~G~g~--------~~~~l~~~~~~--~--~v~~~g~~~~~ 234 (377)
+.+++++|+..+||.++++.++..+ .++++++.|++. ..+.+..+.++ . +|.|....+.+
T Consensus 390 ~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~ 469 (601)
T TIGR02094 390 LTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDIN 469 (601)
T ss_pred cEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHH
Confidence 7999999999999999988887665 368999999775 44555555554 2 67777766555
Q ss_pred hHHHHHhcCCEEEe-ccC-CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCC------------CCHHH
Q 017114 235 ELSQAYASGDVFVM-PSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP------------GDLDD 300 (377)
Q Consensus 235 ~~~~~~~~adi~v~-ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~ 300 (377)
-...+++.||++++ ||. .|++|++=+-||..|.+.+++-.|...|.. ++.+|+.+.+ .|+++
T Consensus 470 lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~----~~~nGf~f~~~~~~~~~~~~d~~da~~ 545 (601)
T TIGR02094 470 LARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY----DGDNGWAIGDGEEYDDEEEQDRLDAEA 545 (601)
T ss_pred HHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC----CCCcEEEECCCccccccccccCCCHHH
Confidence 56688999999999 999 999999999999999999999888877765 4579999984 78999
Q ss_pred HHHHHHHHh-----hC-----HHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 017114 301 CLSKLEPLL-----YN-----QELRETMGQAARQEM-EKYDWRAATRTIRNEQY 343 (377)
Q Consensus 301 l~~~i~~~~-----~~-----~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly 343 (377)
|.++|++.+ ++ |....++.+++.+.. ..|||+.++++|.+..|
T Consensus 546 l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 546 LYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 999997655 22 344667766666654 47999999999996444
No 93
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.80 E-value=1.7e-19 Score=136.74 Aligned_cols=127 Identities=32% Similarity=0.551 Sum_probs=93.6
Q ss_pred CeEEEeecccccccHHHHHH-HHHhC----CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEec
Q 017114 175 PLIVHVGRLGVEKSLDFLKR-VMDRL----PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 249 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~-a~~~l----~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~p 249 (377)
+++++.|++.+.|+++.+++ +++.+ |+++|.|+|.++. +++++ ...+|+++|++ +++.++++.||+++.|
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~-~~~~v~~~g~~--~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL-RRPNVRFHGFV--EELPEILAAADVGLIP 77 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH-HHCTEEEE-S---HHHHHHHHC-SEEEE-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh-cCCCEEEcCCH--HHHHHHHHhCCEEEEE
Confidence 57899999999999999999 76555 7999999998765 35555 34589999999 6899999999999999
Q ss_pred cC-CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 250 SE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 250 s~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
+. .+++|++++|||++|+|||+++. +..++. ...+.|.++ .+|+++++++|.++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~---~~~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIV---EEDGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS------SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCc-chhhhe---eecCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 86 67899999999999999999998 566666 556677777 78999999999999875
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.80 E-value=5.1e-18 Score=150.66 Aligned_cols=260 Identities=16% Similarity=0.114 Sum_probs=165.1
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCee
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 120 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 120 (377)
+....++.+.+++.+||+|++.+...+.+.....++..|+|+++++.- ... .|.. ...+.+.+.+|.+
T Consensus 75 ~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P---~~w-----aw~~----~~~r~l~~~~d~v 142 (385)
T TIGR00215 75 LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP---QVW-----AWRK----WRAKKIEKATDFL 142 (385)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC---cHh-----hcCc----chHHHHHHHHhHh
Confidence 445568889999999999999985433333444778889999965421 110 0000 1256778899999
Q ss_pred EecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEE-ee-cccc-cccHHHHHHHHH
Q 017114 121 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVH-VG-RLGV-EKSLDFLKRVMD 197 (377)
Q Consensus 121 i~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~G-~~~~-~k~~~~l~~a~~ 197 (377)
++.++...+.+.+.+ .+..++.|++..............+.++.. ++++++|++ .| +... .|++..++++++
T Consensus 143 ~~~~~~e~~~~~~~g----~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl-~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~ 217 (385)
T TIGR00215 143 LAILPFEKAFYQKKN----VPCRFVGHPLLDAIPLYKPDRKSAREKLGI-DHNGETLALLPGSRGSEVEKLFPLFLKAAQ 217 (385)
T ss_pred hccCCCcHHHHHhcC----CCEEEECCchhhhccccCCCHHHHHHHcCC-CCCCCEEEEECCCCHHHHHHhHHHHHHHHH
Confidence 999999988887543 256678888743322111122334444443 335555554 44 4444 578888988877
Q ss_pred hC----CCceEEEEe-cCccHHHHHHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCC
Q 017114 198 RL----PEARIAFIG-DGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 268 (377)
Q Consensus 198 ~l----~~~~l~i~G-~g~~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 268 (377)
.+ |++++++.+ ++...+.+++.... ..+.+.+ .++..+|+.||++|.+| |.+.+|+|++|+|
T Consensus 218 ~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P 288 (385)
T TIGR00215 218 LLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLID----GDARKAMFAADAALLAS-----GTAALEAALIKTP 288 (385)
T ss_pred HHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEEC----chHHHHHHhCCEEeecC-----CHHHHHHHHcCCC
Confidence 65 577776654 44444444443322 2444433 25678999999999999 7777899999999
Q ss_pred eEEe-cCCCC----------------CccccccCCCCe--eEEeCCCCHHHHHHHHHHHhhCH----HHHHHHHHHHHHH
Q 017114 269 VVGV-RAGGI----------------PDIIPEDQDGKI--GYLFNPGDLDDCLSKLEPLLYNQ----ELRETMGQAARQE 325 (377)
Q Consensus 269 vI~~-~~~~~----------------~~~~~~~~~~~~--g~~~~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~~~~ 325 (377)
+|.. ..+.. +.++ .+... -++-...+++.+++.+.++++|+ +.++++.+...+.
T Consensus 289 ~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil---~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 365 (385)
T TIGR00215 289 MVVGYRMKPLTFLIARRLVKTDYISLPNIL---ANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEEL 365 (385)
T ss_pred EEEEEcCCHHHHHHHHHHHcCCeeeccHHh---cCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 8876 22221 2222 11111 11223447899999999999999 8888877776665
Q ss_pred HHhc
Q 017114 326 MEKY 329 (377)
Q Consensus 326 ~~~~ 329 (377)
.+..
T Consensus 366 ~~~l 369 (385)
T TIGR00215 366 RQRI 369 (385)
T ss_pred HHHh
Confidence 5544
No 95
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=5.6e-17 Score=140.13 Aligned_cols=262 Identities=17% Similarity=0.198 Sum_probs=181.7
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCee
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 120 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 120 (377)
+....+.++++++++||+|+..+... ..+..++++..++|++++..+..+. ...++..+.++.|
T Consensus 77 ~~~~~~a~~il~~~kPd~vig~Ggyv-s~P~~~Aa~~~~iPv~ihEqn~~~G---------------~ank~~~~~a~~V 140 (357)
T COG0707 77 LKGVLQARKILKKLKPDVVIGTGGYV-SGPVGIAAKLLGIPVIIHEQNAVPG---------------LANKILSKFAKKV 140 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCcc-ccHHHHHHHhCCCCEEEEecCCCcc---------------hhHHHhHHhhcee
Confidence 44456788999999999999988543 4555668899999999988776543 2345677888888
Q ss_pred EecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEee-cccccccHHHHHHHHHhC
Q 017114 121 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG-RLGVEKSLDFLKRVMDRL 199 (377)
Q Consensus 121 i~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-~~~~~k~~~~l~~a~~~l 199 (377)
.+.-+. ...+ .+++++.+..|++..+... . .....+... .. ++++|+.+| +.+...--+.+.++...+
T Consensus 141 ~~~f~~-----~~~~-~~~~~~~~tG~Pvr~~~~~-~-~~~~~~~~~--~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l 209 (357)
T COG0707 141 ASAFPK-----LEAG-VKPENVVVTGIPVRPEFEE-L-PAAEVRKDG--RL-DKKTILVTGGSQGAKALNDLVPEALAKL 209 (357)
T ss_pred eecccc-----cccc-CCCCceEEecCcccHHhhc-c-chhhhhhhc--cC-CCcEEEEECCcchhHHHHHHHHHHHHHh
Confidence 776654 1122 2456788999999877665 2 112211111 11 555555555 555555455666666677
Q ss_pred CC-ceEEE-EecCccHHHHHHhhcCCC-EEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC
Q 017114 200 PE-ARIAF-IGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 200 ~~-~~l~i-~G~g~~~~~l~~~~~~~~-v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
.+ ++++. +|.+. .+++.....+.+ +.+.+|. +++..+|+.||++|.- +.++++.|.+++|+|+|.-+.+.
T Consensus 210 ~~~~~v~~~~G~~~-~~~~~~~~~~~~~~~v~~f~--~dm~~~~~~ADLvIsR----aGa~Ti~E~~a~g~P~IliP~p~ 282 (357)
T COG0707 210 ANRIQVIHQTGKND-LEELKSAYNELGVVRVLPFI--DDMAALLAAADLVISR----AGALTIAELLALGVPAILVPYPP 282 (357)
T ss_pred hhCeEEEEEcCcch-HHHHHHHHhhcCcEEEeeHH--hhHHHHHHhccEEEeC----CcccHHHHHHHhCCCEEEeCCCC
Confidence 64 66654 45544 555555555455 8888888 7899999999999944 44799999999999999776543
Q ss_pred C--------CccccccCCCCeeEEeCCCC--HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 277 I--------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 277 ~--------~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
. ...+ ++.+.|.++...+ ++.+.+.|.+++++++..++|.+++++....-..+.+++.+.
T Consensus 283 ~~~~~Q~~NA~~l---~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~ 352 (357)
T COG0707 283 GADGHQEYNAKFL---EKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLLL 352 (357)
T ss_pred CccchHHHHHHHH---HhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3 3344 5566777777655 889999999999999999999999888765555555554443
No 96
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.76 E-value=5.7e-16 Score=135.67 Aligned_cols=279 Identities=16% Similarity=0.177 Sum_probs=168.2
Q ss_pred CCcEEEEEeeCCCCCccc---cCceeecccCCCCCc---ccccc---ccccchHHHHHHHHhcCCCEEEeCCCchhHHHH
Q 017114 1 MGDEVMVVTTHEGVPQEF---YGAKLIGSRSFPCPW---YQKVP---LSLALSPRIISEVARFKPDIIHASSPGIMVFGA 71 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~ 71 (377)
+||+|.+++...+..... .++....+....+.. ++.+. .......+..+++++.+||+|+.++. +..++.
T Consensus 28 ~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Gg-y~s~p~ 106 (352)
T PRK12446 28 DNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGG-FVSVPV 106 (352)
T ss_pred CCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCc-hhhHHH
Confidence 489999999776543322 123333332111111 00011 11233456778899999999999874 445566
Q ss_pred HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCC
Q 017114 72 LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS 151 (377)
Q Consensus 72 ~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~ 151 (377)
.+.++..++|++++..+..+. ...+.+.+.++.+++.-+...+.+ +.+++.+..+++..
T Consensus 107 ~~aa~~~~~p~~i~e~n~~~g---------------~~nr~~~~~a~~v~~~f~~~~~~~------~~~k~~~tG~Pvr~ 165 (352)
T PRK12446 107 VIGGWLNRVPVLLHESDMTPG---------------LANKIALRFASKIFVTFEEAAKHL------PKEKVIYTGSPVRE 165 (352)
T ss_pred HHHHHHcCCCEEEECCCCCcc---------------HHHHHHHHhhCEEEEEccchhhhC------CCCCeEEECCcCCc
Confidence 779999999998865553321 345677889999887654433222 34678888888877
Q ss_pred CCCCCccCchHHHHHhhCCCCCCCeEEEe-ecccccccH-HHHHHHHHhC-CCceEEE-EecCccHHHHHHhhcCCCEEE
Q 017114 152 ESFHPRFRSSEMRWRLSNGEPDKPLIVHV-GRLGVEKSL-DFLKRVMDRL-PEARIAF-IGDGPYREELEKMFTGMPAVF 227 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-G~~~~~k~~-~~l~~a~~~l-~~~~l~i-~G~g~~~~~l~~~~~~~~v~~ 227 (377)
+..... ....+..+... +++++++.+ |+.+. +.+ +.+.+++..+ .+++++. +|.....+.... . .++..
T Consensus 166 ~~~~~~--~~~~~~~~~l~-~~~~~iLv~GGS~Ga-~~in~~~~~~l~~l~~~~~vv~~~G~~~~~~~~~~-~--~~~~~ 238 (352)
T PRK12446 166 EVLKGN--REKGLAFLGFS-RKKPVITIMGGSLGA-KKINETVREALPELLLKYQIVHLCGKGNLDDSLQN-K--EGYRQ 238 (352)
T ss_pred cccccc--chHHHHhcCCC-CCCcEEEEECCccch-HHHHHHHHHHHHhhccCcEEEEEeCCchHHHHHhh-c--CCcEE
Confidence 654322 22333334333 344555554 55544 444 4555566655 3566654 454432222222 1 24444
Q ss_pred ccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC---------CCccccccCCCCeeEEeCC--C
Q 017114 228 TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG---------IPDIIPEDQDGKIGYLFNP--G 296 (377)
Q Consensus 228 ~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~---------~~~~~~~~~~~~~g~~~~~--~ 296 (377)
.+++ .+++.++|+.||++|.- +.++++.|++++|+|.|...... ..+.+ .+.+.+..+.. -
T Consensus 239 ~~f~-~~~m~~~~~~adlvIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l---~~~g~~~~l~~~~~ 310 (352)
T PRK12446 239 FEYV-HGELPDILAITDFVISR----AGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF---ERQGYASVLYEEDV 310 (352)
T ss_pred ecch-hhhHHHHHHhCCEEEEC----CChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH---HHCCCEEEcchhcC
Confidence 5665 25799999999999943 45889999999999999875431 11233 34445555543 3
Q ss_pred CHHHHHHHHHHHhhCHHHHH
Q 017114 297 DLDDCLSKLEPLLYNQELRE 316 (377)
Q Consensus 297 ~~~~l~~~i~~~~~~~~~~~ 316 (377)
+++.+.+++.++++|++.++
T Consensus 311 ~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 311 TVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred CHHHHHHHHHHHHcCHHHHH
Confidence 57899999999998876653
No 97
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.74 E-value=1.8e-16 Score=144.22 Aligned_cols=205 Identities=17% Similarity=0.137 Sum_probs=160.3
Q ss_pred HHhcCCeeEecChhHHHHHHHhccc--CCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEee--ccccccc
Q 017114 113 LHRAADLTLVPSVAIGKDLEAARVT--AANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG--RLGVEKS 188 (377)
Q Consensus 113 ~~~~~d~ii~~s~~~~~~~~~~~~~--~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G--~~~~~k~ 188 (377)
....+|.+|+.++...+.+..+... ...++..||.+.- ... +.. ....+..+++++ |+ +.|.
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~~-~~~-----------s~r~~~~~I~v~idrL-~ek~ 334 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RLR-LGQ-----------SQQLYETEIGFWIDGL-SDEE 334 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EEe-cCh-----------hhcccceEEEEEcCCC-ChHH
Confidence 3567899999888777777665531 1134556774432 111 111 122445688888 99 9999
Q ss_pred HHHHHHHHHhC----CCceEEEEecCccH---HHHHHh----hcC-----------------------------CCEEEc
Q 017114 189 LDFLKRVMDRL----PEARIAFIGDGPYR---EELEKM----FTG-----------------------------MPAVFT 228 (377)
Q Consensus 189 ~~~l~~a~~~l----~~~~l~i~G~g~~~---~~l~~~----~~~-----------------------------~~v~~~ 228 (377)
++.+++++..+ |+++|.+.|.+... +.+++. ..+ ..|.|.
T Consensus 335 ~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~ 414 (519)
T TIGR03713 335 LQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFT 414 (519)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEE
Confidence 99888887655 89999999966432 333222 112 479999
Q ss_pred cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHH
Q 017114 229 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 308 (377)
|+.+..++.+.|..+.++|.+|..|+++ +.+||+++|+|+| .-+..+++ +++.+|+++ +|..+|++++..+
T Consensus 415 gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V---~d~~NG~li--~d~~~l~~al~~~ 485 (519)
T TIGR03713 415 TLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYV---EHNKNGYII--DDISELLKALDYY 485 (519)
T ss_pred ecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceee---EcCCCcEEe--CCHHHHHHHHHHH
Confidence 9997779999999999999999999999 9999999999999 44457889 899999999 5999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017114 309 LYNQELRETMGQAARQEMEKYDWRAATRTIRN 340 (377)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 340 (377)
+.+++.++++...+.+.+++||.+++++++.+
T Consensus 486 L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~ 517 (519)
T TIGR03713 486 LDNLKNWNYSLAYSIKLIDDYSSENIIERLNE 517 (519)
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999999999999999998863
No 98
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.71 E-value=8e-16 Score=137.93 Aligned_cols=279 Identities=19% Similarity=0.222 Sum_probs=167.9
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHh
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 134 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 134 (377)
.-|+|++|+...+.++.++-.+..+.++.+.+|..+|....-....+. ..+. ..+-.||.|-+.+....+.|...
T Consensus 141 ~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~r----~eiL-~glL~aDlIgFqt~~~~~nFl~~ 215 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPWR----EEIL-RGLLGADLIGFQTFEYARNFLSC 215 (474)
T ss_dssp TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S----HHHHTTSTTH----HHHH-HHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCCHHHHhhCCcH----HHHH-HHhhcCCEEEEecHHHHHHHHHH
Confidence 558999999988888887777777889999999988764322221111 1122 23346999999999888877553
Q ss_pred c----cc-------------CCCcEEEecCCCCCCCCCCccCc---hHHHHHhhCCCCC-CCeEEEeecccccccHHHHH
Q 017114 135 R----VT-------------AANKIRIWKKGVDSESFHPRFRS---SEMRWRLSNGEPD-KPLIVHVGRLGVEKSLDFLK 193 (377)
Q Consensus 135 ~----~~-------------~~~~i~~i~~gv~~~~~~~~~~~---~~~~~~~~~~~~~-~~~i~~~G~~~~~k~~~~l~ 193 (377)
- +. ....+.+.|.|+|.+.+...... .+....+.....+ ..+|+-+.+++..||+..-+
T Consensus 216 ~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~~~~~ii~gvDrld~~kGi~~kl 295 (474)
T PF00982_consen 216 CKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFKGKRKIIVGVDRLDYTKGIPEKL 295 (474)
T ss_dssp HHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTTT-SEEEEEE--B-GGG-HHHHH
T ss_pred HHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcCCCcEEEEEeccchhhcCHHHHH
Confidence 1 10 11236678889988766432111 1111112112234 47899999999999999988
Q ss_pred HHHHhC----C----CceEEEEec-----Cc----cHHHHHHhhcCC----------CEE-EccccCchhHHHHHhcCCE
Q 017114 194 RVMDRL----P----EARIAFIGD-----GP----YREELEKMFTGM----------PAV-FTGMLLGEELSQAYASGDV 245 (377)
Q Consensus 194 ~a~~~l----~----~~~l~i~G~-----g~----~~~~l~~~~~~~----------~v~-~~g~~~~~~~~~~~~~adi 245 (377)
+|++.+ | ++.|+-++. .+ ..+++.+++.+. .|. +.+.++.+++..+|+.||+
T Consensus 296 ~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv 375 (474)
T PF00982_consen 296 RAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADV 375 (474)
T ss_dssp HHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SE
T ss_pred HHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhh
Confidence 888766 4 455655552 11 223333333211 244 4556899999999999999
Q ss_pred EEeccCCcccchHHHHHHhcCCC----eEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHH
Q 017114 246 FVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQ 320 (377)
Q Consensus 246 ~v~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~ 320 (377)
++.++..+|+.++..|+.+|... +|.|...|..+.+ .+.+++++|.|.++++++|.+.++ .+++++..-+
T Consensus 376 ~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L-----~~~al~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~ 450 (474)
T PF00982_consen 376 ALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQL-----SEAALLVNPWDIEEVADAIHEALTMPPEERKERHA 450 (474)
T ss_dssp EEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT------TTS-EEE-TT-HHHHHHHHHHHHT--HHHHHHHHH
T ss_pred EEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHc-----CCccEEECCCChHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999875 7788888888877 434589999999999999999998 5667777777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 017114 321 AARQEMEKYDWRAATRTIRNEQY 343 (377)
Q Consensus 321 ~~~~~~~~~s~~~~~~~~~~~ly 343 (377)
..++.+..++....++.+++.+.
T Consensus 451 ~~~~~v~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 451 RLREYVREHDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHhHhCCHHHHHHHHHHHhh
Confidence 77888889999999999987653
No 99
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.69 E-value=2e-14 Score=134.98 Aligned_cols=301 Identities=18% Similarity=0.155 Sum_probs=204.2
Q ss_pred HHHHh--cCCCEEEeCCCchhHHHHH----HHHH----------hhCCCEEEEeccCCcccccccccccc----------
Q 017114 49 SEVAR--FKPDIIHASSPGIMVFGAL----IIAK----------LLCVPIVMSYHTHVPVYIPRYTFSWL---------- 102 (377)
Q Consensus 49 ~~i~~--~~pDii~~~~~~~~~~~~~----~~~~----------~~~~~~i~~~h~~~~~~~~~~~~~~~---------- 102 (377)
+.++. .+||++|++.++....+.- ++.. ..+...++|.|+..+.....+.....
T Consensus 240 ~~Lr~lg~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~ 319 (778)
T cd04299 240 RALRALGIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARE 319 (778)
T ss_pred HHHHHhCCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHH
Confidence 44443 4899999999765544330 1211 12456899999866543111110000
Q ss_pred --------------h----hhHHHHHHHHHhcCCeeEecChhHHHHHHHhc----c---cCCCcEEEecCCCCCCCCC-C
Q 017114 103 --------------V----KPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR----V---TAANKIRIWKKGVDSESFH-P 156 (377)
Q Consensus 103 --------------~----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~----~---~~~~~i~~i~~gv~~~~~~-~ 156 (377)
. .....+.+..++.|+.+-++|+-..+..++.. . ....++.-|-|||+...+. |
T Consensus 320 lgl~~~~~~~lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P 399 (778)
T cd04299 320 LGLSRDRFLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAP 399 (778)
T ss_pred cCCCHHHHhhhccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCH
Confidence 0 00135677888999999999998754444422 1 1145688999999998776 2
Q ss_pred cc----------------------------Cch-------HHHHHh-------------------------h-CCCCCCC
Q 017114 157 RF----------------------------RSS-------EMRWRL-------------------------S-NGEPDKP 175 (377)
Q Consensus 157 ~~----------------------------~~~-------~~~~~~-------------------------~-~~~~~~~ 175 (377)
.. .+. ..+.++ . ...++.+
T Consensus 400 ~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~l 479 (778)
T cd04299 400 EMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVL 479 (778)
T ss_pred HHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCcc
Confidence 10 010 001111 0 0234556
Q ss_pred eEEEeecccccccHHHHHHHHHhC--------CCceEEEEecCc--------cHHHHHHhhcC----CCEEEccccCchh
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMDRL--------PEARIAFIGDGP--------YREELEKMFTG----MPAVFTGMLLGEE 235 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~~l--------~~~~l~i~G~g~--------~~~~l~~~~~~----~~v~~~g~~~~~~ 235 (377)
+++|++|+..+|+.++++..+.++ .++++++.|++. ..+.+.++.++ .+|.|+...+-+-
T Consensus 480 tigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~l 559 (778)
T cd04299 480 TIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMAL 559 (778)
T ss_pred EEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHH
Confidence 899999999999999998876655 368999999654 12233444442 2688877776555
Q ss_pred HHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCC------------CCHHHH
Q 017114 236 LSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP------------GDLDDC 301 (377)
Q Consensus 236 ~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~l 301 (377)
...+++.||+.++||+ .|++|++=+-||..|.+-+++-.|...|.. ++.+|+.+.+ .|+++|
T Consensus 560 A~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~----~g~nGwaig~~~~~~~~~~~d~~da~~L 635 (778)
T cd04299 560 ARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY----DGENGWAIGDGDEYEDDEYQDAEEAEAL 635 (778)
T ss_pred HHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc----CCCCceEeCCCccccChhhcchhhHHHH
Confidence 6678999999999999 999999999999999999999998888876 5788999987 467777
Q ss_pred HHHHHHHhh----C------HHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHhh
Q 017114 302 LSKLEPLLY----N------QELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFWRKK 353 (377)
Q Consensus 302 ~~~i~~~~~----~------~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~~~~~~~ 353 (377)
.+.|++.+- + |....+|.+++...+ ..|+|+.++++|.+.+|.-+.......
T Consensus 636 y~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~~~~~~~~ 698 (778)
T cd04299 636 YDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLPAARRGRRL 698 (778)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHHHHHHHHh
Confidence 777764332 2 556667777766655 589999999999999998876665544
No 100
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.69 E-value=4.3e-15 Score=131.48 Aligned_cols=277 Identities=16% Similarity=0.101 Sum_probs=194.6
Q ss_pred CCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhc
Q 017114 56 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR 135 (377)
Q Consensus 56 pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 135 (377)
-|+|++|+.+.+.++.++-.+....++-+..|..+|...-.....+.. .+.+ .+-.+|.|-+.+......|.+.-
T Consensus 124 ~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~r~----eil~-glL~aDlIGFqt~~y~rnFl~~~ 198 (474)
T PRK10117 124 DDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPPHD----ELLE-QLCDYDLLGFQTENDRLAFLDCL 198 (474)
T ss_pred CCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCChHHHhhCCChH----HHHH-HHHhCccceeCCHHHHHHHHHHH
Confidence 379999999888888776666677889999999887643222112111 1222 33468999999988887776521
Q ss_pred ----c------------cCCCcEEEecCCCCCCCCCCccCc--hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHH
Q 017114 136 ----V------------TAANKIRIWKKGVDSESFHPRFRS--SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 197 (377)
Q Consensus 136 ----~------------~~~~~i~~i~~gv~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~ 197 (377)
+ ...-++.+.|-|+|.+.|...... ......+.....++.+|+-+.|+++.||+..=++|++
T Consensus 199 ~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~~~~lilgVDRLDytKGi~~rl~Afe 278 (474)
T PRK10117 199 SNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYE 278 (474)
T ss_pred HHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcCCCeEEEEecccccccCHHHHHHHHH
Confidence 0 011246678899998776432211 1111122212235778888999999999999888887
Q ss_pred hC----C----CceEEEEecC-----c----cHHHHHHhhcCC----------CEEE-ccccCchhHHHHHhcCCEEEec
Q 017114 198 RL----P----EARIAFIGDG-----P----YREELEKMFTGM----------PAVF-TGMLLGEELSQAYASGDVFVMP 249 (377)
Q Consensus 198 ~l----~----~~~l~i~G~g-----~----~~~~l~~~~~~~----------~v~~-~g~~~~~~~~~~~~~adi~v~p 249 (377)
.+ | ++.|+-++.. + ...++.+++.+. .|.+ ...++.+++..+|+.||+++.+
T Consensus 279 ~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVT 358 (474)
T PRK10117 279 ALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVT 358 (474)
T ss_pred HHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEec
Confidence 75 4 3556555421 1 122333333221 1443 4567889999999999999999
Q ss_pred cCCcccchHHHHHHhcCC-----CeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHHH
Q 017114 250 SESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAAR 323 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~-----PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~ 323 (377)
+..+|+.++..|+.||.. .+|.|...|..+.+ . .+++++|.|.++++++|.+.+. .++++++.-+..+
T Consensus 359 plRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L---~---~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~ 432 (474)
T PRK10117 359 PLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---T---SALIVNPYDRDEVAAALDRALTMPLAERISRHAEML 432 (474)
T ss_pred ccccccccccchheeeecCCCCccEEEecccchHHHh---C---CCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999976 37888888888777 2 3789999999999999999998 5667777777777
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 017114 324 QEMEKYDWRAATRTIRNEQY 343 (377)
Q Consensus 324 ~~~~~~s~~~~~~~~~~~ly 343 (377)
+.+.+++....++.+++.+.
T Consensus 433 ~~v~~~dv~~W~~~fL~~L~ 452 (474)
T PRK10117 433 DVIVKNDINHWQECFISDLK 452 (474)
T ss_pred HHhhhCCHHHHHHHHHHHHH
Confidence 88889999999999996554
No 101
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.65 E-value=1.7e-13 Score=121.90 Aligned_cols=269 Identities=15% Similarity=0.093 Sum_probs=168.4
Q ss_pred chHHHHHHHHhc--CCCEEEeCCCchhHHHHHHHHHhhCCCEEE---EeccCCcccccccc--------cccchhhHHHH
Q 017114 43 LSPRIISEVARF--KPDIIHASSPGIMVFGALIIAKLLCVPIVM---SYHTHVPVYIPRYT--------FSWLVKPMWLV 109 (377)
Q Consensus 43 ~~~~~~~~i~~~--~pDii~~~~~~~~~~~~~~~~~~~~~~~i~---~~h~~~~~~~~~~~--------~~~~~~~~~~~ 109 (377)
...+.++.+++. +||+|++.+... .+++++..|+|+++ .-.+........+. .......+ -.
T Consensus 79 ~~~~~~~~~~~~~~~p~~v~~~Gg~v----~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~-e~ 153 (396)
T TIGR03492 79 LTLGQWRALRKWAKKGDLIVAVGDIV----PLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-ER 153 (396)
T ss_pred HHHHHHHHHHHHhhcCCEEEEECcHH----HHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHH-HH
Confidence 345667788888 999999988543 45577889999887 44443311101100 00111111 12
Q ss_pred HHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccc--cc
Q 017114 110 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EK 187 (377)
Q Consensus 110 ~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k 187 (377)
.+...+.|+.+++..+...+.+.+.+. ++.++.|++-....... . . ....+...+++..|+-.. .+
T Consensus 154 n~l~~~~a~~v~~~~~~t~~~l~~~g~----k~~~vGnPv~d~l~~~~-~-~------~l~~~~~~lllLpGSR~ae~~~ 221 (396)
T TIGR03492 154 WLMRSRRCLAVFVRDRLTARDLRRQGV----RASYLGNPMMDGLEPPE-R-K------PLLTGRFRIALLPGSRPPEAYR 221 (396)
T ss_pred HHhhchhhCEEeCCCHHHHHHHHHCCC----eEEEeCcCHHhcCcccc-c-c------ccCCCCCEEEEECCCCHHHHHc
Confidence 456668999999999999999987543 78899998744432211 1 0 112223345556665433 35
Q ss_pred cHHHHHHHHHhC---CCceEEEEe-cCccHHHHHHhhcCCC------------------EEEccccCchhHHHHHhcCCE
Q 017114 188 SLDFLKRVMDRL---PEARIAFIG-DGPYREELEKMFTGMP------------------AVFTGMLLGEELSQAYASGDV 245 (377)
Q Consensus 188 ~~~~l~~a~~~l---~~~~l~i~G-~g~~~~~l~~~~~~~~------------------v~~~g~~~~~~~~~~~~~adi 245 (377)
++..++++++.+ +++++++.- .+...+.+++...+.+ +.+..+. .++..+|+.||+
T Consensus 222 ~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~ADl 299 (396)
T TIGR03492 222 NLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR--GAFAEILHWADL 299 (396)
T ss_pred cHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEech--HhHHHHHHhCCE
Confidence 677889998887 577776654 4445555555443222 4444444 689999999999
Q ss_pred EEeccCCcccchHHHHHHhcCCCeEEecCCCCC---ccccccCC----CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHH
Q 017114 246 FVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP---DIIPEDQD----GKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 318 (377)
Q Consensus 246 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~~~~~~----~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 318 (377)
+|..| |++..|++++|+|+|....++.. .+. +. ...+......+++.+++++.++++|++.++++
T Consensus 300 vI~rS-----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~---~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~ 371 (396)
T TIGR03492 300 GIAMA-----GTATEQAVGLGKPVIQLPGKGPQFTYGFA---EAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERC 371 (396)
T ss_pred EEECc-----CHHHHHHHHhCCCEEEEeCCCCHHHHHHH---HhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 99876 56679999999999988744321 222 21 12344455667899999999999999888887
Q ss_pred HHHHHHHH-HhcCHHHHHHHH
Q 017114 319 GQAARQEM-EKYDWRAATRTI 338 (377)
Q Consensus 319 ~~~~~~~~-~~~s~~~~~~~~ 338 (377)
.+++++.. +....+.+++.+
T Consensus 372 ~~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 372 RRNGQERMGPPGASARIAESI 392 (396)
T ss_pred HHHHHHhcCCCCHHHHHHHHH
Confidence 75444333 334445454433
No 102
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=6.5e-14 Score=123.40 Aligned_cols=277 Identities=18% Similarity=0.210 Sum_probs=194.2
Q ss_pred CEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcc
Q 017114 57 DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARV 136 (377)
Q Consensus 57 Dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~ 136 (377)
|+|++|+.+.+.++.++-.+....++.+..|-.+|...--....+.. .+. ..+-.||.|-+.++..+..|.....
T Consensus 149 DiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~r~----eIl-~gll~~dligFqt~~y~~nF~~~~~ 223 (486)
T COG0380 149 DIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLPWRE----EIL-EGLLGADLIGFQTESYARNFLDLCS 223 (486)
T ss_pred CEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCchHH----HHH-HHhhcCCeeEecCHHHHHHHHHHHH
Confidence 99999999888888777666677788999999887632211111111 111 2334699999999888887754311
Q ss_pred -----------------cCCCcEEEecCCCCCCCCCCccCch----HHHHHhhCCCCCCCeEEEeecccccccHHHHHHH
Q 017114 137 -----------------TAANKIRIWKKGVDSESFHPRFRSS----EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRV 195 (377)
Q Consensus 137 -----------------~~~~~i~~i~~gv~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a 195 (377)
....++..+|-|+|...+....... ..+........++.+|+.+.|++..||+..=+.|
T Consensus 224 r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~~~kiivgvDRlDy~kGi~~rl~A 303 (486)
T COG0380 224 RLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGRNKKLIVGVDRLDYSKGIPQRLLA 303 (486)
T ss_pred HhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcCCceEEEEehhcccccCcHHHHHH
Confidence 0124567889999987765433221 1111111122347888899999999999888888
Q ss_pred HHhC----C----CceEEEEecCc---------cHHHHHHhhcCC----------CEE-EccccCchhHHHHHhcCCEEE
Q 017114 196 MDRL----P----EARIAFIGDGP---------YREELEKMFTGM----------PAV-FTGMLLGEELSQAYASGDVFV 247 (377)
Q Consensus 196 ~~~l----~----~~~l~i~G~g~---------~~~~l~~~~~~~----------~v~-~~g~~~~~~~~~~~~~adi~v 247 (377)
++++ | ++.++-++..+ ....+...+.+. .|. +.-.++.+++..+|..||+++
T Consensus 304 fe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~l 383 (486)
T COG0380 304 FERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVML 383 (486)
T ss_pred HHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceee
Confidence 8766 4 35555555221 112222222211 144 445588899999999999999
Q ss_pred eccCCcccchHHHHHHhcCC----CeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHH
Q 017114 248 MPSESETLGLVVLEAMSSGI----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAA 322 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~----PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~ 322 (377)
..+..+|+.++..|+.+|.- +.|.|...|....+ .+ .++++|.|.++++++|.+.++ .++++++.-+..
T Consensus 384 VtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L---~~---AliVNP~d~~~va~ai~~AL~m~~eEr~~r~~~~ 457 (486)
T COG0380 384 VTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASEL---RD---ALIVNPWDTKEVADAIKRALTMSLEERKERHEKL 457 (486)
T ss_pred eccccccccHHHHHHHHhhcCCCCcEEEeccccchhhh---cc---CEeECCCChHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999854 67888887777766 22 799999999999999999998 566677766677
Q ss_pred HHHHHhcCHHHHHHHHHHHHHH
Q 017114 323 RQEMEKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 323 ~~~~~~~s~~~~~~~~~~~ly~ 344 (377)
++.+..++...+++.+++.+.+
T Consensus 458 ~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 458 LKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh
Confidence 7778889999999998877765
No 103
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.64 E-value=6.2e-14 Score=134.23 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=196.4
Q ss_pred hcCC--CEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHH
Q 017114 53 RFKP--DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 130 (377)
Q Consensus 53 ~~~p--Dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 130 (377)
..+| |+|++|+.+.+.++.++-.+....++-+.+|..+|.........+.. .+. ..+-.||.|-+.+...+..
T Consensus 197 ~~~~~~d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~----eiL-~glL~aDlIGFht~~yar~ 271 (854)
T PLN02205 197 VINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIRE----ELL-RALLNSDLIGFHTFDYARH 271 (854)
T ss_pred HhCCCCCEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCChHHHhhCCcHH----HHH-HHHhcCCeEEecCHHHHHH
Confidence 3456 89999999888888777666678899999999887643222222111 112 2334699999999988887
Q ss_pred HHHhc----cc---------------CCCcEEEecCCCCCCCCCCccCchH---HHHHh--hCCCCCCCeEEEeeccccc
Q 017114 131 LEAAR----VT---------------AANKIRIWKKGVDSESFHPRFRSSE---MRWRL--SNGEPDKPLIVHVGRLGVE 186 (377)
Q Consensus 131 ~~~~~----~~---------------~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~--~~~~~~~~~i~~~G~~~~~ 186 (377)
|.+.- +. ..-.+.+.|-|+|.+.+.......+ ....+ ....+++.+|+-+.+++..
T Consensus 272 Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ilgVDrlD~~ 351 (854)
T PLN02205 272 FLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCDQDRIMLLGVDDMDIF 351 (854)
T ss_pred HHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhccCCCEEEEEccCcccc
Confidence 76621 00 1124667889999887644322111 11111 1222357889999999999
Q ss_pred ccHHHHHHHHHhC----CC----ceEEEEe-----cCccHHHHH----HhhcCC----------CEEEc-cccCchhHHH
Q 017114 187 KSLDFLKRVMDRL----PE----ARIAFIG-----DGPYREELE----KMFTGM----------PAVFT-GMLLGEELSQ 238 (377)
Q Consensus 187 k~~~~l~~a~~~l----~~----~~l~i~G-----~g~~~~~l~----~~~~~~----------~v~~~-g~~~~~~~~~ 238 (377)
||+..=+.|++++ |+ +.|+-+. .++..++++ +.+.+. .|.+. ..++.+++..
T Consensus 352 KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~a 431 (854)
T PLN02205 352 KGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVA 431 (854)
T ss_pred cCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHH
Confidence 9999988888776 54 4555444 122222222 222211 25544 6688899999
Q ss_pred HHhcCCEEEeccCCcccchHHHHHHhcCC-------------------CeEEecCCCCCccccccCCCCeeEEeCCCCHH
Q 017114 239 AYASGDVFVMPSESETLGLVVLEAMSSGI-------------------PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLD 299 (377)
Q Consensus 239 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~-------------------PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 299 (377)
+|+.||+++.++..+|+.++..||.+|.. .+|.|...|....+ . .+++++|.|.+
T Consensus 432 ly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L---~---~Ai~VNP~d~~ 505 (854)
T PLN02205 432 YYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL---S---GAIRVNPWNID 505 (854)
T ss_pred HHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHh---C---cCeEECCCCHH
Confidence 99999999999999999999999999864 36677777666655 2 37899999999
Q ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017114 300 DCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 300 ~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~ 345 (377)
+++++|.+.+. .+++++..-+..++.+..++...+++.+++++.+.
T Consensus 506 ~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 506 AVADAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERT 552 (854)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 99999999998 45566666666777788899999999999777554
No 104
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.63 E-value=1.2e-13 Score=122.96 Aligned_cols=193 Identities=11% Similarity=0.149 Sum_probs=140.5
Q ss_pred hcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHH
Q 017114 115 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 194 (377)
Q Consensus 115 ~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 194 (377)
.+.|.||+.++...+.+.+++. +..++.++|-|+-.. ... .......+++++. .--++.+.+
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~-~~~~~~~ip~g~i~~---~~~-----------~~r~~~~~l~~t~---s~~I~~i~~ 299 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLD-NEYQEQISQLGYLYP---FKK-----------DNKYRKQALILTN---SDQIEHLEE 299 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhC-cccCceEEEEEEEEe---ecc-----------ccCCcccEEEECC---HHHHHHHHH
Confidence 6789999999888887877765 356777788776521 110 1123445666663 445666667
Q ss_pred HHHhCCCceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 195 VMDRLPEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 195 a~~~l~~~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
+.+.+|+++|.| |.+.. .+.+.++.+-.++...+.+...++.++|..||+++..+..|++++++.||+..|+||++.+
T Consensus 300 Lv~~lPd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd 378 (438)
T TIGR02919 300 IVQALPDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFE 378 (438)
T ss_pred HHHhCCCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEe
Confidence 777789999999 75544 5677666444565544444446899999999999999999999999999999999999998
Q ss_pred CC-CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHH
Q 017114 274 AG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWR 332 (377)
Q Consensus 274 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~ 332 (377)
.. +..+++ .+ |.+++.+++++|+++|.+++.+++..++.-..-++.+..-+.+
T Consensus 379 ~t~~~~~~i---~~---g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~~~~~~ 432 (438)
T TIGR02919 379 ETAHNRDFI---AS---ENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQREHANDISKE 432 (438)
T ss_pred cccCCcccc---cC---CceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCHH
Confidence 76 344555 33 7899999999999999999999987666555544444333333
No 105
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.63 E-value=4.8e-14 Score=125.61 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=144.8
Q ss_pred HHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCch----HHHHHh------------hCC
Q 017114 107 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS----EMRWRL------------SNG 170 (377)
Q Consensus 107 ~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~----~~~~~~------------~~~ 170 (377)
..+++...+.||.+.++|+-.+......... .+=.|+|||++.+.+.....-+ ..+.++ .+.
T Consensus 212 ~~iEraaA~~AdvFTTVSeITa~Ea~~LL~r--~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd 289 (633)
T PF05693_consen 212 HSIERAAAHYADVFTTVSEITAKEAEHLLKR--KPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFD 289 (633)
T ss_dssp HHHHHHHHHHSSEEEESSHHHHHHHHHHHSS----SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-
T ss_pred HHHHHHHHHhcCeeeehhhhHHHHHHHHhCC--CCCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 4678889999999999999999888876542 2335789999998776543211 111111 111
Q ss_pred CCCCCeEEEeeccc-ccccHHHHHHHHHhCC--------Cc---eEEEEec-----------------------------
Q 017114 171 EPDKPLIVHVGRLG-VEKSLDFLKRVMDRLP--------EA---RIAFIGD----------------------------- 209 (377)
Q Consensus 171 ~~~~~~i~~~G~~~-~~k~~~~l~~a~~~l~--------~~---~l~i~G~----------------------------- 209 (377)
+++...+...||.. ..||+|.+++|+.++. +. -|+|+-.
T Consensus 290 ~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~ 369 (633)
T PF05693_consen 290 LDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEK 369 (633)
T ss_dssp GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHH
Confidence 23445667788886 4699999999998772 22 2333310
Q ss_pred -----------Cc--c---------HHHHHHhhc------------------------------------CCC--EEEcc
Q 017114 210 -----------GP--Y---------REELEKMFT------------------------------------GMP--AVFTG 229 (377)
Q Consensus 210 -----------g~--~---------~~~l~~~~~------------------------------------~~~--v~~~g 229 (377)
|. . .-.+++.+- +++ |.|++
T Consensus 370 ~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P 449 (633)
T PF05693_consen 370 IGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHP 449 (633)
T ss_dssp HHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--
T ss_pred HHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEee
Confidence 00 0 001111100 001 44443
Q ss_pred -ccC------chhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccC--CCCeeEEeC---CCC
Q 017114 230 -MLL------GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ--DGKIGYLFN---PGD 297 (377)
Q Consensus 230 -~~~------~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~--~~~~g~~~~---~~~ 297 (377)
+++ .-+..+++..||++|+||++|+||.+.+|+.++|+|.|+|+..|...++.+.. ....|+.+- ..+
T Consensus 450 ~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n 529 (633)
T PF05693_consen 450 EYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKN 529 (633)
T ss_dssp S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-
T ss_pred ccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCC
Confidence 222 23678999999999999999999999999999999999999988776663211 122454443 234
Q ss_pred H----HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Q 017114 298 L----DDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRK 352 (377)
Q Consensus 298 ~----~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~~~~ 352 (377)
. +++++.|.++.. +...+..+++++.+..+..+|+.+...|. ..|+.++++.-.
T Consensus 530 ~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~-~Ay~~AL~~a~p 588 (633)
T PF05693_consen 530 YDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYE-KAYDLALRRAYP 588 (633)
T ss_dssp HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHH-HHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHhcCc
Confidence 4 455555555554 56677788888888888999999999998 688888876644
No 106
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.59 E-value=1.1e-14 Score=101.80 Aligned_cols=90 Identities=29% Similarity=0.488 Sum_probs=83.8
Q ss_pred EEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017114 245 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 324 (377)
Q Consensus 245 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 324 (377)
+++.|+..++++.+++|+||||+|+|+++.+++.+++ .++..++.++ |++++.+++..+++|++.++++++++++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~---~~~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIF---EDGEHIITYN--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHc---CCCCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4677888899999999999999999999999999999 8888888888 9999999999999999999999999999
Q ss_pred HHH-hcCHHHHHHHHH
Q 017114 325 EME-KYDWRAATRTIR 339 (377)
Q Consensus 325 ~~~-~~s~~~~~~~~~ 339 (377)
.++ +|+|++.+++++
T Consensus 76 ~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 995 899999999986
No 107
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.58 E-value=9.6e-15 Score=116.10 Aligned_cols=148 Identities=23% Similarity=0.237 Sum_probs=86.1
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV 80 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~ 80 (377)
+||+|+|++...+...... ...................+.....+.+.+++.+||+||++.+........ ..+ ++
T Consensus 28 ~G~~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~-~~~--~~ 102 (177)
T PF13439_consen 28 RGHEVTVVSPGVKDPIEEE--LVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIALL-ACR--KV 102 (177)
T ss_dssp TT-EEEEEESS-TTS-SST--EEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHHH-HHH--CS
T ss_pred CCCEEEEEEcCCCccchhh--ccceeeeeecccccccchhHHHHHHHHHHHHHcCCCeEEecccchhHHHHH-hcc--CC
Confidence 5999999998776444333 111112222222233334455667889999999999999998654443322 222 89
Q ss_pred CEEEEeccCCcc-cccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCC
Q 017114 81 PIVMSYHTHVPV-YIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF 154 (377)
Q Consensus 81 ~~i~~~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~ 154 (377)
|++++.|+.+.. ................+.+...+.+|.++++|+..++.+.+ ++.+++++.+||||+|.+.|
T Consensus 103 ~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 103 PIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp CEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH
T ss_pred CEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHc
Confidence 999999997632 11111222223333444566689999999999999999999 66678999999999999876
No 108
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.57 E-value=9.8e-15 Score=113.99 Aligned_cols=139 Identities=23% Similarity=0.229 Sum_probs=81.3
Q ss_pred CCcEEEEEeeCCCCCc---cccCceeecccCCCCCccccccccccchHHHHHHH--HhcCCCEEEeCCCchhHHHHHHHH
Q 017114 1 MGDEVMVVTTHEGVPQ---EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEV--ARFKPDIIHASSPGIMVFGALIIA 75 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~pDii~~~~~~~~~~~~~~~~ 75 (377)
+||+|+|++....... ...++.+..++.... ......+.....+.+++ ++.+||+||++++. ..+.+.++.
T Consensus 17 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~~~~-~~~~~~~~~ 92 (160)
T PF13579_consen 17 RGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRR---PWPLRLLRFLRRLRRLLAARRERPDVVHAHSPT-AGLVAALAR 92 (160)
T ss_dssp TT-EEEEEEE---GGG-SEEETTEEEEEE--S-S---SSGGGHCCHHHHHHHHCHHCT---SEEEEEHHH-HHHHHHHHH
T ss_pred CCCEEEEEecCCCCcccccccCCceEEeccCCcc---chhhhhHHHHHHHHHHHhhhccCCeEEEecccc-hhHHHHHHH
Confidence 5999999998765432 234455544443222 22333455567778887 88899999999943 344445455
Q ss_pred HhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCC
Q 017114 76 KLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 148 (377)
Q Consensus 76 ~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g 148 (377)
+..++|+|+++|+...... ..+....+..+++..++.+|.++++|+..++.+.+.+ .+.+++.+||||
T Consensus 93 ~~~~~p~v~~~h~~~~~~~----~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g-~~~~ri~vipnG 160 (160)
T PF13579_consen 93 RRRGIPLVVTVHGTLFRRG----SRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRRYG-VPPDRIHVIPNG 160 (160)
T ss_dssp HHHT--EEEE-SS-T----------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHHH----GGGEEE----
T ss_pred HccCCcEEEEECCCchhhc----cchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHHhC-CCCCcEEEeCcC
Confidence 5789999999998542211 3344555677899999999999999999999999954 578999999997
No 109
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.53 E-value=5.7e-12 Score=111.15 Aligned_cols=272 Identities=14% Similarity=0.110 Sum_probs=170.5
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCee
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 120 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 120 (377)
......+.+++++.+||+|++++.....+++.+.+...++|++- +|+..... + . .--...+.+-+.++..
T Consensus 79 ~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~H-veaG~rs~--~----~---~eE~~r~~i~~la~l~ 148 (365)
T TIGR03568 79 GLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAH-IHGGEVTE--G----A---IDESIRHAITKLSHLH 148 (365)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEE-EECCccCC--C----C---chHHHHHHHHHHHhhc
Confidence 34456888999999999999999877788888899999999983 33321110 0 0 0112234456778889
Q ss_pred EecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCccCchHHHHHhhCCCCCCCeEEEeec-----ccccccHHHHHH
Q 017114 121 LVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-----LGVEKSLDFLKR 194 (377)
Q Consensus 121 i~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~-----~~~~k~~~~l~~ 194 (377)
++.++...+.+.+.+. ++.++.++.|.. |.-.............++....+.+.+++.+-+ ......+..+++
T Consensus 149 f~~t~~~~~~L~~eg~-~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~ 227 (365)
T TIGR03568 149 FVATEEYRQRVIQMGE-DPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLK 227 (365)
T ss_pred cCCCHHHHHHHHHcCC-CCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHH
Confidence 9999999999988765 567788777643 432211111223344444432223443333332 233345677777
Q ss_pred HHHhCC-CceEEEEecCc----cHHHHHHhhc-CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCC
Q 017114 195 VMDRLP-EARIAFIGDGP----YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 268 (377)
Q Consensus 195 a~~~l~-~~~l~i~G~g~----~~~~l~~~~~-~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 268 (377)
++..+. ++.++.-..++ ..+.++++.. ..++.+.+.++..++..+++.||++|.-| +..+.||.++|+|
T Consensus 228 ~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdS-----Sggi~EA~~lg~P 302 (365)
T TIGR03568 228 ALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNS-----SSGIIEAPSFGVP 302 (365)
T ss_pred HHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcC-----hhHHHhhhhcCCC
Confidence 776663 34232212222 2344555543 35799999999999999999999999544 2344899999999
Q ss_pred eEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 269 VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 269 vI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
+|+- +..++.+ +.+.+.+++ ..|++++.+++.++ .++..+..+.. ....|...+.++++.
T Consensus 303 vv~l--~~R~e~~---~~g~nvl~v-g~~~~~I~~a~~~~-~~~~~~~~~~~----~~~pygdg~as~rI~ 362 (365)
T TIGR03568 303 TINI--GTRQKGR---LRADSVIDV-DPDKEEIVKAIEKL-LDPAFKKSLKN----VKNPYGDGNSSERII 362 (365)
T ss_pred EEee--cCCchhh---hhcCeEEEe-CCCHHHHHHHHHHH-hChHHHHHHhh----CCCCCCCChHHHHHH
Confidence 9954 4566766 567777767 55899999999995 44433222211 112365555555554
No 110
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=5.3e-11 Score=101.96 Aligned_cols=266 Identities=16% Similarity=0.158 Sum_probs=172.1
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeE
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 121 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 121 (377)
.....+.+.++..+||++++.....+ ...+..++..|+|+++..--..... .........+.+.+++..|.|+
T Consensus 110 D~~~~v~rFl~~~~P~l~Ii~EtElW-Pnli~e~~~~~~p~~LvNaRLS~rS------~~~y~k~~~~~~~~~~~i~li~ 182 (419)
T COG1519 110 DLPIAVRRFLRKWRPKLLIIMETELW-PNLINELKRRGIPLVLVNARLSDRS------FARYAKLKFLARLLFKNIDLIL 182 (419)
T ss_pred CchHHHHHHHHhcCCCEEEEEecccc-HHHHHHHHHcCCCEEEEeeeechhh------hHHHHHHHHHHHHHHHhcceee
Confidence 33467889999999999888764433 2234577889999987543221111 1112334567788899999999
Q ss_pred ecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCcc-CchHHH--HHhhCCCCCCCeEEEeecccccccHHHHHHHHH-
Q 017114 122 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRF-RSSEMR--WRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD- 197 (377)
Q Consensus 122 ~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~- 197 (377)
+.|+..++.|.+.|. .++.+..| .+...... ...... .+..... .+.+++..+....+ -+.++++++
T Consensus 183 aQse~D~~Rf~~LGa---~~v~v~GN---lKfd~~~~~~~~~~~~~~r~~l~~-~r~v~iaaSTH~GE--eei~l~~~~~ 253 (419)
T COG1519 183 AQSEEDAQRFRSLGA---KPVVVTGN---LKFDIEPPPQLAAELAALRRQLGG-HRPVWVAASTHEGE--EEIILDAHQA 253 (419)
T ss_pred ecCHHHHHHHHhcCC---cceEEecc---eeecCCCChhhHHHHHHHHHhcCC-CCceEEEecCCCch--HHHHHHHHHH
Confidence 999999999999886 23666665 22211111 111111 1111222 27788888773222 233555554
Q ss_pred ---hCCCceEEEEecCccH-HHHHHhhcCCC-----------------EEEccccCchhHHHHHhcCCEEEec-cCCccc
Q 017114 198 ---RLPEARIAFIGDGPYR-EELEKMFTGMP-----------------AVFTGMLLGEELSQAYASGDVFVMP-SESETL 255 (377)
Q Consensus 198 ---~l~~~~l~i~G~g~~~-~~l~~~~~~~~-----------------v~~~g~~~~~~~~~~~~~adi~v~p-s~~e~~ 255 (377)
..|+..++++-..+++ +.+.++++..+ |.+...+ -|+..+|..||+.++- |...-.
T Consensus 254 l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv~~G 331 (419)
T COG1519 254 LKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLVPIG 331 (419)
T ss_pred HHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHHHhhccEEEECCcccCCC
Confidence 3478889988866543 45555555443 2222333 4899999999997765 444556
Q ss_pred chHHHHHHhcCCCeEEecC-CCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 017114 256 GLVVLEAMSSGIPVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME 327 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 327 (377)
|--++|++++|+|||.-.. -...++...-...+.++.++ |.+.+++++..++.|++.++++++++...++
T Consensus 332 GHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~--~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 332 GHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE--DADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred CCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC--CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 7789999999999997643 23333332225566677776 6888899999888899999999999988875
No 111
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.45 E-value=1.1e-11 Score=107.52 Aligned_cols=259 Identities=18% Similarity=0.197 Sum_probs=159.8
Q ss_pred cccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCC--EEEEeccCCcccccccccccchhhHHHHHHHHHh
Q 017114 38 PLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP--IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHR 115 (377)
Q Consensus 38 ~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~--~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (377)
+.......++.+.+++.+||+++.-+.+.+.+......|..|++ +++.+--.. +-|.. ...+.+-+
T Consensus 65 ~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~Pqv--------WAWr~----~R~~~i~~ 132 (373)
T PF02684_consen 65 PKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQV--------WAWRP----GRAKKIKK 132 (373)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCce--------eeeCc----cHHHHHHH
Confidence 33355566777888889999998877554544444456677777 665543211 11111 23456778
Q ss_pred cCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccc-c-cccHHHHH
Q 017114 116 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG-V-EKSLDFLK 193 (377)
Q Consensus 116 ~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~-~-~k~~~~l~ 193 (377)
.+|.+++.-+...+.+.+.+. ++.++.|++-.. ..+.......+..+ ...+++.+.+..|+=. . .+.+..++
T Consensus 133 ~~D~ll~ifPFE~~~y~~~g~----~~~~VGHPl~d~-~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l 206 (373)
T PF02684_consen 133 YVDHLLVIFPFEPEFYKKHGV----PVTYVGHPLLDE-VKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFL 206 (373)
T ss_pred HHhheeECCcccHHHHhccCC----CeEEECCcchhh-hccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 899999999999999998763 678888886332 22332333334444 4445556677788532 2 24457778
Q ss_pred HHHHhC----CCceEEEEecCccHHH-HHHhhcCC--CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcC
Q 017114 194 RVMDRL----PEARIAFIGDGPYREE-LEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 266 (377)
Q Consensus 194 ~a~~~l----~~~~l~i~G~g~~~~~-l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 266 (377)
++++.+ |++++++.......+. +.+..... ++.+. +...+-.+.|+.||+.+..| |++.+|++.+|
T Consensus 207 ~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g 279 (373)
T PF02684_consen 207 EAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIV--IIEGESYDAMAAADAALAAS-----GTATLEAALLG 279 (373)
T ss_pred HHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEE--EcCCchHHHHHhCcchhhcC-----CHHHHHHHHhC
Confidence 877665 7889888775443333 33333322 22221 12257788999999999887 89999999999
Q ss_pred CCeEEe-cCC----------------CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHH
Q 017114 267 IPVVGV-RAG----------------GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAA 322 (377)
Q Consensus 267 ~PvI~~-~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 322 (377)
+|.|+. ..+ +++.++.+ ++--.-++-+..+++.+++++..++.|++.++......
T Consensus 280 ~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~-~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~ 351 (373)
T PF02684_consen 280 VPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAG-REVVPELIQEDATPENIAAELLELLENPEKRKKQKELF 351 (373)
T ss_pred CCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcC-CCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 998752 222 22222210 00111123345589999999999999887644443333
No 112
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=2.8e-11 Score=102.54 Aligned_cols=263 Identities=16% Similarity=0.132 Sum_probs=165.0
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhC--CCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCC
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC--VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 118 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~--~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 118 (377)
+...+++.+.+...+||++++-+.+.+.+......|..+ +|+|..+--.... |.. .....+.+.+|
T Consensus 71 lk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWA--------Wr~----~Ra~~i~~~~D 138 (381)
T COG0763 71 LKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWA--------WRP----KRAVKIAKYVD 138 (381)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceee--------ech----hhHHHHHHHhh
Confidence 444556666777889999998775444443333445555 8888654332111 111 12455778899
Q ss_pred eeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccc--cccHHHHHHHH
Q 017114 119 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVM 196 (377)
Q Consensus 119 ~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k~~~~l~~a~ 196 (377)
++++.=+...+.+.+.+. ..+++.|+.-... .....+...+.++....+.+...+..|+=.. .+....+.+++
T Consensus 139 ~lLailPFE~~~y~k~g~----~~~yVGHpl~d~i-~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~ 213 (381)
T COG0763 139 HLLAILPFEPAFYDKFGL----PCTYVGHPLADEI-PLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAA 213 (381)
T ss_pred HeeeecCCCHHHHHhcCC----CeEEeCChhhhhc-cccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHH
Confidence 999999999999988765 3778888764332 1222345567777776677778888885432 24466677777
Q ss_pred HhC----CCceEEEEecCccHHHHHHhhcCCCE-EEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 197 DRL----PEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 197 ~~l----~~~~l~i~G~g~~~~~l~~~~~~~~v-~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
+.+ |+.++++--.....+.+......... ...-.+...+-.+.+..||+.+..| |+..+|++.+|+|.|+
T Consensus 214 ~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv 288 (381)
T COG0763 214 QELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVV 288 (381)
T ss_pred HHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEE
Confidence 655 78999998765554444443332222 1223344467888999999999877 8999999999999886
Q ss_pred e-cCCC----------------CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 017114 272 V-RAGG----------------IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 326 (377)
Q Consensus 272 ~-~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 326 (377)
+ .... .+.++.. +.-..-++-+...++.+++++..++.|...++++.+..++.-
T Consensus 289 ~Yk~~~it~~iak~lvk~~yisLpNIi~~-~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~ 359 (381)
T COG0763 289 AYKVKPITYFIAKRLVKLPYVSLPNILAG-REIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELH 359 (381)
T ss_pred EEeccHHHHHHHHHhccCCcccchHHhcC-CccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 4 2222 2222200 000000111234689999999999999866666666555543
No 113
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.42 E-value=2.7e-11 Score=105.86 Aligned_cols=223 Identities=15% Similarity=0.152 Sum_probs=130.2
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHH----HhcCCe
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFL----HRAADL 119 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~ 119 (377)
...+.+.+++.+||+|++..... ....++..|+|.+...|..+..... ............+.+.. ...++.
T Consensus 83 ~~~~~~~l~~~~pDlVIsD~~~~----~~~aa~~~giP~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (318)
T PF13528_consen 83 IRREIRWLREFRPDLVISDFYPL----AALAARRAGIPVIVISNQYWFLHPN-FWLPWDQDFGRLIERYIDRYHFPPADR 157 (318)
T ss_pred HHHHHHHHHhcCCCEEEEcChHH----HHHHHHhcCCCEEEEEehHHccccc-CCcchhhhHHHHHHHhhhhccCCcccc
Confidence 34566778889999999986433 2357788999998877765432111 01011111111111211 223333
Q ss_pred eEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC
Q 017114 120 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 199 (377)
Q Consensus 120 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l 199 (377)
.+..+..... ....+..+++..+........ ..+.+.+++++|..+.. .++++++.+
T Consensus 158 ~l~~~~~~~~-------~~~~~~~~~~p~~~~~~~~~~------------~~~~~~iLv~~gg~~~~----~~~~~l~~~ 214 (318)
T PF13528_consen 158 RLALSFYPPL-------PPFFRVPFVGPIIRPEIRELP------------PEDEPKILVYFGGGGPG----DLIEALKAL 214 (318)
T ss_pred eecCCccccc-------cccccccccCchhcccccccC------------CCCCCEEEEEeCCCcHH----HHHHHHHhC
Confidence 3333322000 001112222222221111110 12356788999987665 778899999
Q ss_pred CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCc
Q 017114 200 PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 200 ~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~ 279 (377)
++.+++++|.+.. .....||++.++.. .++.++|+.||++|.- +.-+++.|++++|+|+|+-...+..|
T Consensus 215 ~~~~~~v~g~~~~------~~~~~ni~~~~~~~-~~~~~~m~~ad~vIs~----~G~~t~~Ea~~~g~P~l~ip~~~~~E 283 (318)
T PF13528_consen 215 PDYQFIVFGPNAA------DPRPGNIHVRPFST-PDFAELMAAADLVISK----GGYTTISEALALGKPALVIPRPGQDE 283 (318)
T ss_pred CCCeEEEEcCCcc------cccCCCEEEeecCh-HHHHHHHHhCCEEEEC----CCHHHHHHHHHcCCCEEEEeCCCCch
Confidence 9999999986521 11255888887642 6899999999999944 33466999999999999887755333
Q ss_pred ------cccccCCCCeeEEeC--CCCHHHHHHHHHHH
Q 017114 280 ------IIPEDQDGKIGYLFN--PGDLDDCLSKLEPL 308 (377)
Q Consensus 280 ------~~~~~~~~~~g~~~~--~~~~~~l~~~i~~~ 308 (377)
.+ ++.+.|..++ .-+++.+.++|+++
T Consensus 284 Q~~~a~~l---~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 284 QEYNARKL---EELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHHH---HHCCCeEEcccccCCHHHHHHHHhcC
Confidence 33 4455666654 33678888887653
No 114
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.42 E-value=6.6e-12 Score=109.49 Aligned_cols=276 Identities=15% Similarity=0.116 Sum_probs=154.2
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeE
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 121 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 121 (377)
.....+.+.+.+.+||+|++++.....+++.+.+...++| |.+++.-...+ ....+. .-......+-+.|+..+
T Consensus 54 ~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ip-v~HieaGlRs~--d~~~g~---~de~~R~~i~~la~lhf 127 (346)
T PF02350_consen 54 LAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIP-VAHIEAGLRSG--DRTEGM---PDEINRHAIDKLAHLHF 127 (346)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-E-EEEES-----S---TTSST---THHHHHHHHHHH-SEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCC-EEEecCCCCcc--ccCCCC---chhhhhhhhhhhhhhhc
Confidence 3456788889999999999999888888888899999999 44555531110 000011 11234456678899999
Q ss_pred ecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCccCchHH-HHHhhCCCCCCCeEEEeecccc---cccHHHHH---
Q 017114 122 VPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEM-RWRLSNGEPDKPLIVHVGRLGV---EKSLDFLK--- 193 (377)
Q Consensus 122 ~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~G~~~~---~k~~~~l~--- 193 (377)
+.++..++.+.+.+. ++.+|.++.|.. |.-........... .........++.+++..=+... ......+.
T Consensus 128 ~~t~~~~~~L~~~G~-~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l 206 (346)
T PF02350_consen 128 APTEEARERLLQEGE-PPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEAL 206 (346)
T ss_dssp ESSHHHHHHHHHTT---GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHH
T ss_pred cCCHHHHHHHHhcCC-CCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHH
Confidence 999999999999875 678999988754 22111100010011 1111112334444444422221 22334444
Q ss_pred HHHHhCCCceEEEEec--CccHHHHHHhhcC-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHH-HHHhcCCCe
Q 017114 194 RVMDRLPEARIAFIGD--GPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIPV 269 (377)
Q Consensus 194 ~a~~~l~~~~l~i~G~--g~~~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~Pv 269 (377)
+++...+++.+++... ......+.+.+.. .++.+...+++.++..+++.|+++|.-| | .+. ||..+|+|+
T Consensus 207 ~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eEa~~lg~P~ 280 (346)
T PF02350_consen 207 KALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEEAPSLGKPV 280 (346)
T ss_dssp HHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESS-----H-HHHHHGGGGT--E
T ss_pred HHHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHHHHHhCCeE
Confidence 4444446788888775 3334444444433 3899999999999999999999998444 4 566 999999999
Q ss_pred EEe-cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 270 VGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 270 I~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
|.- +.+.-++.. ..+.+.+ +. .|.+++.+++.+++.+.+.+..+.. ....|.-...++++.
T Consensus 281 v~iR~~geRqe~r---~~~~nvl-v~-~~~~~I~~ai~~~l~~~~~~~~~~~----~~npYgdG~as~rI~ 342 (346)
T PF02350_consen 281 VNIRDSGERQEGR---ERGSNVL-VG-TDPEAIIQAIEKALSDKDFYRKLKN----RPNPYGDGNASERIV 342 (346)
T ss_dssp EECSSS-S-HHHH---HTTSEEE-ET-SSHHHHHHHHHHHHH-HHHHHHHHC----S--TT-SS-HHHHHH
T ss_pred EEecCCCCCHHHH---hhcceEE-eC-CCHHHHHHHHHHHHhChHHHHhhcc----CCCCCCCCcHHHHHH
Confidence 987 456666666 4555555 54 6999999999999988554443321 112354444455544
No 115
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.35 E-value=2.3e-10 Score=103.70 Aligned_cols=260 Identities=11% Similarity=0.067 Sum_probs=160.9
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC--CEEEEeccCCcccccccccccchhhHHHHHHHHHhcCC
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV--PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 118 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~--~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 118 (377)
.....++.+.+++.+||++++-+.+.+.+.....+|..|+ |+++.+--... -|.. ...+.+.+.+|
T Consensus 296 ~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVW--------AWR~----~Rikki~k~vD 363 (608)
T PRK01021 296 WYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIW--------AWRP----KRKTILEKYLD 363 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccce--------eeCc----chHHHHHHHhh
Confidence 4445667778888999999986654444433345566775 98865533211 1111 13456778899
Q ss_pred eeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccc-c-cccHHHHHHHH
Q 017114 119 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG-V-EKSLDFLKRVM 196 (377)
Q Consensus 119 ~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~-~-~k~~~~l~~a~ 196 (377)
.+++.=+...+.+++.+. +++.+.|+.-.. ........+.+++.+..++.+.+.+..|+=. . .+.+..+++++
T Consensus 364 ~ll~IfPFE~~~y~~~gv----~v~yVGHPL~d~-i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa 438 (608)
T PRK01021 364 LLLLILPFEQNLFKDSPL----RTVYLGHPLVET-ISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAF 438 (608)
T ss_pred hheecCccCHHHHHhcCC----CeEEECCcHHhh-cccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 999999999999988653 678888887332 2222233445555555444455667888542 2 35578889998
Q ss_pred H--hC-CCceEEEEecCc-cHHHHHHhhcCCC---EEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 197 D--RL-PEARIAFIGDGP-YREELEKMFTGMP---AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 197 ~--~l-~~~~l~i~G~g~-~~~~l~~~~~~~~---v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
+ .+ ++.++++....+ ..+.+++...+.+ +.+. +.++-.++|++||+.+..| |++.+|++.+|+|.
T Consensus 439 ~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii---~~~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~Pm 510 (608)
T PRK01021 439 LASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIV---PSQFRYELMRECDCALAKC-----GTIVLETALNQTPT 510 (608)
T ss_pred HHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEe---cCcchHHHHHhcCeeeecC-----CHHHHHHHHhCCCE
Confidence 8 66 567776654332 3455566554322 2322 1223468999999999888 89999999999998
Q ss_pred EEe-cCCC------------------CCccccccCCCCeeEE--eCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 017114 270 VGV-RAGG------------------IPDIIPEDQDGKIGYL--FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME 327 (377)
Q Consensus 270 I~~-~~~~------------------~~~~~~~~~~~~~g~~--~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 327 (377)
|+. ..+. ++.++.. ++-..-++ -+..+++.+++++ +++.|++.++++.+..++..+
T Consensus 511 VV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIag-r~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 511 IVTCQLRPFDTFLAKYIFKIILPAYSLPNIILG-STIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQ 587 (608)
T ss_pred EEEEecCHHHHHHHHHHHhccCCeeehhHHhcC-CCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence 753 2221 1122200 00001123 1345799999996 888888877777666555544
No 116
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.34 E-value=2.6e-10 Score=96.06 Aligned_cols=273 Identities=16% Similarity=0.150 Sum_probs=178.0
Q ss_pred HHHHHHHHhcCCCEEEeCCCc-----hhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCe
Q 017114 45 PRIISEVARFKPDIIHASSPG-----IMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 119 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~-----~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 119 (377)
......++.++||+|++.... ......+.+++..++|+++...+...+. .... ...-..+.+..+-..|.
T Consensus 67 ~~~~~~i~~fk~d~iv~~~~~~~~~~~~~~~~~a~l~~~~l~~~~w~te~p~~~-~~~~----~~~~~~~~~~~l~~fd~ 141 (373)
T COG4641 67 LESLLYIREFKPDIIVNMSGDDQPDEESTIDLWAWLKRKCLPVIVWYTEDPYDT-DIFS----QVAEEQLARRPLFIFDN 141 (373)
T ss_pred HHHHHHHHhcCCcEEEEecccccccceehHHHHHHhhcCCcceEEEEeccchhh-hhhh----hhhHHHhhccccchhhh
Confidence 345677889999999986533 2233334466777889666655532211 1000 00000111111223344
Q ss_pred eEecChhH-HHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHH-
Q 017114 120 TLVPSVAI-GKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD- 197 (377)
Q Consensus 120 ii~~s~~~-~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~- 197 (377)
|++.++.. .+.+.+.++ ..++..++.++|...+.+..... .-.--+.++|+..+. ..+.+-+++-
T Consensus 142 v~~~g~~l~~~~yyq~~~--~~~~~~~~~a~d~~~~~~i~~da----------~~~~dL~~ign~~pD-r~e~~ke~~~~ 208 (373)
T COG4641 142 VLSFGGGLVANKYYQEGG--ARNCYYLPWAVDDSLFHPIPPDA----------SYDVDLNLIGNPYPD-RVEEIKEFFVE 208 (373)
T ss_pred hhhccchHHHHHHHHhhc--ccceeccCccCCchhcccCCccc----------cceeeeEEecCCCcc-HHHHHHHHhhc
Confidence 56666666 555654443 46788899999999888764322 122358889987765 2233333321
Q ss_pred ---hC-CCceEEEEecCccHHHHHHhhcCCCEEEccccCc-hhHHHHHhcCCEEEeccCC---c-c--cchHHHHHHhcC
Q 017114 198 ---RL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLG-EELSQAYASGDVFVMPSES---E-T--LGLVVLEAMSSG 266 (377)
Q Consensus 198 ---~l-~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~-~~~~~~~~~adi~v~ps~~---e-~--~~~~~~Ea~a~G 266 (377)
.+ -+-++...|.+ +...+....-..++.+.|+++. ..++..++..|+.+.-++. + + +++.++|+++||
T Consensus 209 ps~kl~v~rr~~~~g~~-y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~ 287 (373)
T COG4641 209 PSFKLMVDRRFYVLGPR-YPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCG 287 (373)
T ss_pred cchhhhccceeeecCCc-cchhhhcccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcC
Confidence 11 23455666654 2222222222447888888887 8899999999999886542 2 2 378999999999
Q ss_pred CCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Q 017114 267 IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNE 341 (377)
Q Consensus 267 ~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ 341 (377)
.|.+++...+...++ .++..-++.. |..++.+.+..++..++.++++.+.+.+.+ ..|+.++.+.++.+.
T Consensus 288 ~~liT~~~~~~e~~f---~pgk~~iv~~--d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~ 358 (373)
T COG4641 288 GFLITDYWKDLEKFF---KPGKDIIVYQ--DSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNE 358 (373)
T ss_pred CccccccHHHHHHhc---CCchheEEec--CHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHH
Confidence 999998888888888 6666555544 999999999999999999999999999988 479999998888743
No 117
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.34 E-value=2.4e-10 Score=102.82 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=99.0
Q ss_pred CCCeEEEeecccccc--cHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 173 DKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k--~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
...+++..|+..... -++.+++++..++...++..|.+...+.+... ..++.+.+++++. .+|..||++|..+
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~--~~~v~~~~~~p~~---~ll~~~~~~I~hg 299 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGEL--PPNVEVRQWVPQL---EILKKADAFITHG 299 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccC--CCCeEEeCCCCHH---HHHhhCCEEEECC
Confidence 345667778753322 34556677766643334455655444333332 3478899999764 5789999999543
Q ss_pred CCcccchHHHHHHhcCCCeEEecCCCC----CccccccCCCCeeEEeCC--CCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAARQ 324 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~----~~~~~~~~~~~~g~~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 324 (377)
...++.||+++|+|+|+....+- .+.+ .+.+.|..+.. .++++++++|.+++.|++.++.+.+.+.+
T Consensus 300 ----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l---~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~ 372 (392)
T TIGR01426 300 ----GMNSTMEALFNGVPMVAVPQGADQPMTARRI---AELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAE 372 (392)
T ss_pred ----CchHHHHHHHhCCCEEecCCcccHHHHHHHH---HHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35689999999999998654432 2334 44456666653 35789999999999998866665544444
Q ss_pred HHHhcCHHHHHHHHH
Q 017114 325 EMEKYDWRAATRTIR 339 (377)
Q Consensus 325 ~~~~~s~~~~~~~~~ 339 (377)
....-..+..++.+.
T Consensus 373 ~~~~~~~~~aa~~i~ 387 (392)
T TIGR01426 373 IREAGGARRAADEIE 387 (392)
T ss_pred HHHcCCHHHHHHHHH
Confidence 434455666665554
No 118
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.33 E-value=2.1e-10 Score=103.64 Aligned_cols=149 Identities=16% Similarity=0.096 Sum_probs=96.2
Q ss_pred CCCCeEEEeecccc---cccHHHHHHHHHhCCCceE-EEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEE
Q 017114 172 PDKPLIVHVGRLGV---EKSLDFLKRVMDRLPEARI-AFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 247 (377)
Q Consensus 172 ~~~~~i~~~G~~~~---~k~~~~l~~a~~~l~~~~l-~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v 247 (377)
..+.+++..|+... .+....++++++.+ +.++ +.+|...... .....||.+.+++++. .+|..||++|
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~-~~~~i~~~g~~~~~~----~~~~~~v~~~~~~p~~---~ll~~~d~~I 309 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATL-GQRAILSLGWGGLGA----EDLPDNVRVVDFVPHD---WLLPRCAAVV 309 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc-CCeEEEEccCccccc----cCCCCceEEeCCCCHH---HHhhhhheee
Confidence 35567778888743 44567778888876 4554 4455443221 1223589999998654 5688899999
Q ss_pred eccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHH
Q 017114 248 MPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQA 321 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~ 321 (377)
..|..+++.||+++|+|+|+....+ ..+.+ ...+.|...... +.+++.+++.++++++ .+++..+.
T Consensus 310 ----~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~---~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~~~~~~~ 381 (401)
T cd03784 310 ----HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARV---AELGAGPALDPRELTAERLAAALRRLLDPP-SRRRAAAL 381 (401)
T ss_pred ----ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHH---HHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 4455789999999999999886543 23344 455567666554 6899999999999853 44444444
Q ss_pred HHHHHHhcCHHHHHH
Q 017114 322 ARQEMEKYDWRAATR 336 (377)
Q Consensus 322 ~~~~~~~~s~~~~~~ 336 (377)
+++..+.-..+..++
T Consensus 382 ~~~~~~~~g~~~~~~ 396 (401)
T cd03784 382 LRRIREEDGVPSAAD 396 (401)
T ss_pred HHHHHhccCHHHHHH
Confidence 433323334444443
No 119
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=8.5e-10 Score=93.90 Aligned_cols=274 Identities=18% Similarity=0.185 Sum_probs=175.7
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeE
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 121 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 121 (377)
.....+.+++.+.+||+|.+|+.....+++.+++...++|+.-.--+..... .+ ..-....+..-.-+|..+
T Consensus 79 ~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~--~~------~PEE~NR~l~~~~S~~hf 150 (383)
T COG0381 79 NIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGD--LY------FPEEINRRLTSHLSDLHF 150 (383)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCC--CC------CcHHHHHHHHHHhhhhhc
Confidence 3445778889999999999999888888888899999999874333321110 00 011112344556799999
Q ss_pred ecChhHHHHHHHhcccCCCcEEEecCCCCCC-CCCC--ccCchHHHHHhhCCCCCCCeEEEee-ccc-ccccHHHHHHHH
Q 017114 122 VPSVAIGKDLEAARVTAANKIRIWKKGVDSE-SFHP--RFRSSEMRWRLSNGEPDKPLIVHVG-RLG-VEKSLDFLKRVM 196 (377)
Q Consensus 122 ~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~~~G-~~~-~~k~~~~l~~a~ 196 (377)
++++..++.+.+.+. ++++|.++.|.+-.- .... ..........+ ....++..++..+ |-. ..+++..+++++
T Consensus 151 apte~ar~nLl~EG~-~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~-~~~~~~~~iLvT~HRreN~~~~~~~i~~al 228 (383)
T COG0381 151 APTEIARKNLLREGV-PEKRIFVTGNTVIDALLNTRDRVLEDSKILAKG-LDDKDKKYILVTAHRRENVGEPLEEICEAL 228 (383)
T ss_pred CChHHHHHHHHHcCC-CccceEEeCChHHHHHHHHHhhhccchhhHHhh-hccccCcEEEEEcchhhcccccHHHHHHHH
Confidence 999999999999876 677899999876221 1110 11111111111 2233333444333 332 226677666655
Q ss_pred HhC----CCceEEEEecC-c-cHHHH-HHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 197 DRL----PEARIAFIGDG-P-YREEL-EKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 197 ~~l----~~~~l~i~G~g-~-~~~~l-~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
..+ +++.++.--.. + ..+.. +.+....+|.+...+...+...+++.|-+.+.-| |.-.=||-..|+||
T Consensus 229 ~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg~Pv 303 (383)
T COG0381 229 REIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLGKPV 303 (383)
T ss_pred HHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcCCcE
Confidence 544 56666654422 2 22222 2333344799999999999999999998887555 67788999999999
Q ss_pred EEecC-CCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 270 VGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 270 I~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
++-.. ..-+|.+ +.+.-.++.. +.+.+.+++..++++++.+++|++..-- |.--...+++.
T Consensus 304 l~lR~~TERPE~v----~agt~~lvg~-~~~~i~~~~~~ll~~~~~~~~m~~~~np----Ygdg~as~rIv 365 (383)
T COG0381 304 LVLRDTTERPEGV----EAGTNILVGT-DEENILDAATELLEDEEFYERMSNAKNP----YGDGNASERIV 365 (383)
T ss_pred EeeccCCCCccce----ecCceEEeCc-cHHHHHHHHHHHhhChHHHHHHhcccCC----CcCcchHHHHH
Confidence 98764 4566665 3434455543 7799999999999999998887664433 44333444444
No 120
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.28 E-value=6.4e-10 Score=96.96 Aligned_cols=229 Identities=14% Similarity=0.207 Sum_probs=123.4
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEe
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 122 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 122 (377)
...+..+.+++.+||+|++...... ..+++..++|.+...|.....+ +... .......+.....+...++.++.
T Consensus 81 ~~~~~~~~l~~~~pDlVi~d~~~~~----~~aA~~~~iP~i~i~~q~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (321)
T TIGR00661 81 AIRREINIIREYNPDLIISDFEYST----VVAAKLLKIPVICISNQNYTRY-PLKT-DLIVYPTMAALRIFNERCERFIV 154 (321)
T ss_pred HHHHHHHHHHhcCCCEEEECCchHH----HHHHHhcCCCEEEEecchhhcC-Cccc-chhHHHHHHHHHHhccccceEee
Confidence 3445678889999999999864322 4578899999996656432211 1110 11111111222223333444432
Q ss_pred cChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCCCc
Q 017114 123 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEA 202 (377)
Q Consensus 123 ~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~ 202 (377)
.+..... ...|..+. ............ .. ...+++.++++.|. .+...++++++.++++
T Consensus 155 ~~~~~~~-------------~~~p~~~~--~~~~~~~~~~~~-~~-~~~~~~~iLv~~g~----~~~~~l~~~l~~~~~~ 213 (321)
T TIGR00661 155 PDYPFPY-------------TICPKIIK--NMEGPLIRYDVD-DV-DNYGEDYILVYIGF----EYRYKILELLGKIANV 213 (321)
T ss_pred ecCCCCC-------------CCCccccc--cCCCcccchhhh-cc-ccCCCCcEEEECCc----CCHHHHHHHHHhCCCe
Confidence 2211000 00010000 000000000000 00 01123446666554 2456778888888876
Q ss_pred eEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCc---
Q 017114 203 RIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD--- 279 (377)
Q Consensus 203 ~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~--- 279 (377)
.+++.+..... ..+ ..++.+.++.+ +++.++|..||++|.-+ ..+++.|++++|+|+|..+..+..|
T Consensus 214 ~~i~~~~~~~~---~~~--~~~v~~~~~~~-~~~~~~l~~ad~vI~~~----G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~ 283 (321)
T TIGR00661 214 KFVCYSYEVAK---NSY--NENVEIRRITT-DNFKELIKNAELVITHG----GFSLISEALSLGKPLIVIPDLGQFEQGN 283 (321)
T ss_pred EEEEeCCCCCc---ccc--CCCEEEEECCh-HHHHHHHHhCCEEEECC----ChHHHHHHHHcCCCEEEEcCCCcccHHH
Confidence 55443322111 111 34788888876 68999999999999654 3467999999999999987765333
Q ss_pred ---cccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 280 ---IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 280 ---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
.+ .+.+.|...+..+. ++.+++...++++
T Consensus 284 na~~l---~~~g~~~~l~~~~~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 284 NAVKL---EDLGCGIALEYKEL-RLLEAILDIRNMK 315 (321)
T ss_pred HHHHH---HHCCCEEEcChhhH-HHHHHHHhccccc
Confidence 34 55667888776666 5555555555443
No 121
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.23 E-value=1.4e-09 Score=93.33 Aligned_cols=270 Identities=18% Similarity=0.232 Sum_probs=156.0
Q ss_pred CCcEEEEEeeCCCCCc---cccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHh
Q 017114 1 MGDEVMVVTTHEGVPQ---EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKL 77 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~ 77 (377)
+||+|.|.+.+.+... +..+++...+.........++........++.+.+++.+||++++.+... +...++.
T Consensus 26 ~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~----a~~va~~ 101 (335)
T PF04007_consen 26 RGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISFGSPE----AARVAFG 101 (335)
T ss_pred CCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEecCcHH----HHHHHHH
Confidence 5999999998765322 22333333332222222233333344456788888999999999876422 3446788
Q ss_pred hCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCC-CC
Q 017114 78 LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF-HP 156 (377)
Q Consensus 78 ~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~-~~ 156 (377)
.|+|.|....+..... ..+..+..||.++++.-.-...+.+.+. . +++. -++|++...+ .+
T Consensus 102 lgiP~I~f~D~e~a~~---------------~~~Lt~Pla~~i~~P~~~~~~~~~~~G~-~-~~i~-~y~G~~E~ayl~~ 163 (335)
T PF04007_consen 102 LGIPSIVFNDTEHAIA---------------QNRLTLPLADVIITPEAIPKEFLKRFGA-K-NQIR-TYNGYKELAYLHP 163 (335)
T ss_pred hCCCeEEEecCchhhc---------------cceeehhcCCeeECCcccCHHHHHhcCC-c-CCEE-EECCeeeEEeecC
Confidence 9999998766532111 1234566899999888766666666543 2 3332 2667765322 22
Q ss_pred ccCchHHHHHhhCCCCCCCeEEEeeccc--ccc---c-HHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccc
Q 017114 157 RFRSSEMRWRLSNGEPDKPLIVHVGRLG--VEK---S-LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGM 230 (377)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~~G~~~--~~k---~-~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~ 230 (377)
-.++.....+++. .+++.+++=...+. ... + +..+++.++...+. ++++........+ .++.++.+...
T Consensus 164 F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~~~~~~~---~~~~~~~i~~~ 238 (335)
T PF04007_consen 164 FKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRYEDQREL---FEKYGVIIPPE 238 (335)
T ss_pred CCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCCcchhhH---HhccCccccCC
Confidence 2334555666653 23444444222221 111 1 34455555554344 5666544333222 22333433332
Q ss_pred cCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC---CCCccccccCCCCeeEEeCCCCHHHHHHHHHH
Q 017114 231 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 307 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 307 (377)
. -+...++..||++| .+.|+...||..+|+|.|.+-.+ +..+++ .+.|.++...|++++.+.+.+
T Consensus 239 ~--vd~~~Ll~~a~l~I-----g~ggTMa~EAA~LGtPaIs~~~g~~~~vd~~L-----~~~Gll~~~~~~~ei~~~v~~ 306 (335)
T PF04007_consen 239 P--VDGLDLLYYADLVI-----GGGGTMAREAALLGTPAISCFPGKLLAVDKYL-----IEKGLLYHSTDPDEIVEYVRK 306 (335)
T ss_pred C--CCHHHHHHhcCEEE-----eCCcHHHHHHHHhCCCEEEecCCcchhHHHHH-----HHCCCeEecCCHHHHHHHHHH
Confidence 1 25668999999999 44478899999999999986433 344445 334778888899999886655
Q ss_pred Hh
Q 017114 308 LL 309 (377)
Q Consensus 308 ~~ 309 (377)
..
T Consensus 307 ~~ 308 (335)
T PF04007_consen 307 NL 308 (335)
T ss_pred hh
Confidence 43
No 122
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.20 E-value=1.1e-09 Score=93.08 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=117.4
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecC
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 124 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 124 (377)
..+.+.+++.+||+|++.++....-. ....+..+.+ ++.+.|..... ..+|.++..+
T Consensus 70 ~~~~~~l~~~~~d~vV~D~y~~~~~~-~~~~k~~~~~-l~~iDD~~~~~---------------------~~~D~vin~~ 126 (279)
T TIGR03590 70 LELINLLEEEKFDILIVDHYGLDADW-EKLIKEFGRK-ILVIDDLADRP---------------------HDCDLLLDQN 126 (279)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCHHH-HHHHHHhCCe-EEEEecCCCCC---------------------cCCCEEEeCC
Confidence 45788888899999999876433221 2222333444 44455532110 1588888777
Q ss_pred hhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC-CCce
Q 017114 125 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEAR 203 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l-~~~~ 203 (377)
.. .+...-....+.....+. |.+.-...+..... +.+.....+.+.+++++|..++.+....+++++... ++++
T Consensus 127 ~~-~~~~~y~~~~~~~~~~l~--G~~Y~~lr~eF~~~--~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~ 201 (279)
T TIGR03590 127 LG-ADASDYQGLVPANCRLLL--GPSYALLREEFYQL--ATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAESQINIS 201 (279)
T ss_pred CC-cCHhHhcccCcCCCeEEe--cchHHhhhHHHHHh--hHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhccccCce
Confidence 65 222221111233333333 44322221111100 000000112345788899888877777888888776 4555
Q ss_pred EE-EEecC-ccHHHHHHhhcC-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC
Q 017114 204 IA-FIGDG-PYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 204 l~-i~G~g-~~~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
+. ++|.+ +..+++++.... .++.+.+++ +++.++|+.||++|.. .|.+++|++++|+|+|+....
T Consensus 202 i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~--~~m~~lm~~aDl~Is~-----~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 202 ITLVTGSSNPNLDELKKFAKEYPNIILFIDV--ENMAELMNEADLAIGA-----AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCEEEEeCH--HHHHHHHHHCCEEEEC-----CchHHHHHHHcCCCEEEEEec
Confidence 53 56754 456667666543 478899998 7999999999999974 368999999999999976553
No 123
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=99.12 E-value=5e-10 Score=85.02 Aligned_cols=114 Identities=27% Similarity=0.310 Sum_probs=76.6
Q ss_pred CCcEEEEEeeCCCCCc--cccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhh
Q 017114 1 MGDEVMVVTTHEGVPQ--EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLL 78 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~ 78 (377)
+||||++++...+... ...++.+..++. +... ........++.+.+++.+||+||+|.+...++.+.++++..
T Consensus 23 ~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~---~~k~--~~~~~~~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~ 97 (139)
T PF13477_consen 23 RGYDVHIITPRNDYEKYEIIEGIKVIRLPS---PRKS--PLNYIKYFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLL 97 (139)
T ss_pred CCCEEEEEEcCCCchhhhHhCCeEEEEecC---CCCc--cHHHHHHHHHHHHhccCCCCEEEEecCChHHHHHHHHHHHc
Confidence 4999999999766422 244555554421 1111 22222245889999999999999999866556566677788
Q ss_pred C-CCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecC
Q 017114 79 C-VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 124 (377)
Q Consensus 79 ~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 124 (377)
+ +|++++.|+.... .. ....+..+.+.+++++++|.+++.|
T Consensus 98 ~~~~~i~~~hg~~~~--~~---~~~~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 98 KNKKVIYTVHGSDFY--NS---SKKKKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred CCCCEEEEecCCeee--cC---CchHHHHHHHHHHHHHhCCEEEEcC
Confidence 7 9999999985321 11 1111245678899999999999875
No 124
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.11 E-value=1.8e-09 Score=83.76 Aligned_cols=146 Identities=16% Similarity=0.036 Sum_probs=96.7
Q ss_pred CCcEEEEEeeCCCC---CccccCceeecccCCCCCccccccccccchHHHHHHHHh--cCCCEEEeCCCchhHHHHHHHH
Q 017114 1 MGDEVMVVTTHEGV---PQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVAR--FKPDIIHASSPGIMVFGALIIA 75 (377)
Q Consensus 1 ~G~~V~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~pDii~~~~~~~~~~~~~~~~ 75 (377)
+||+|+|.|..+.. ...+.++++..++.........+...+.......+..+. .+.|++++++....++...+..
T Consensus 33 ~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r 112 (185)
T PF09314_consen 33 KGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLR 112 (185)
T ss_pred CCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHH
Confidence 59999999987654 234566666655433322222333333333344444443 3688999987653333222233
Q ss_pred --HhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCC
Q 017114 76 --KLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVD 150 (377)
Q Consensus 76 --~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~ 150 (377)
+..|.|+++..|+.. +.........+..++..|+...+.+|.+|+.|+...+++.+.+. ..+..+|++|.|
T Consensus 113 ~~~~~g~~v~vN~DGlE--WkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~y~~~~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 113 KLRKKGGKVVVNMDGLE--WKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQDYIKERYG--RKKSTFIAYGAD 185 (185)
T ss_pred hhhhcCCcEEECCCcch--hhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHHcC--CCCcEEecCCCC
Confidence 335779999888753 33444445666777888999999999999999999999999986 467889999976
No 125
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.10 E-value=5e-08 Score=89.68 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=96.0
Q ss_pred CCeEEEeeccc-----ccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEe
Q 017114 174 KPLIVHVGRLG-----VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 248 (377)
Q Consensus 174 ~~~i~~~G~~~-----~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ 248 (377)
..+++..|+.. +.+-...+++|++.++ .++++..++...+ .....||.+.+++|+.++... ..++++|
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~-~~viw~~~~~~~~----~~~p~Nv~i~~w~Pq~~lL~h-p~v~~fI- 369 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLP-YNVLWKYDGEVEA----INLPANVLTQKWFPQRAVLKH-KNVKAFV- 369 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCC-CeEEEEECCCcCc----ccCCCceEEecCCCHHHHhcC-CCCCEEE-
Confidence 46777788763 2345788899999887 4766655433221 112358999999987664211 5688888
Q ss_pred ccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeCC--CCHHHHHHHHHHHhhCHHHHHHHHHHH
Q 017114 249 PSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAA 322 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~ 322 (377)
..|..+++.||+.+|+|+|+-... .....+ +..+.|...+. -+.+++.++|.++++|+..++...+-+
T Consensus 370 ---tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv---~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls 443 (507)
T PHA03392 370 ---TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY---VELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKELR 443 (507)
T ss_pred ---ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH---HHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 556678999999999999987543 233344 45667777654 367899999999999987766655555
Q ss_pred HHHH
Q 017114 323 RQEM 326 (377)
Q Consensus 323 ~~~~ 326 (377)
+...
T Consensus 444 ~~~~ 447 (507)
T PHA03392 444 HLIR 447 (507)
T ss_pred HHHH
Confidence 4444
No 126
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.96 E-value=7.7e-07 Score=74.86 Aligned_cols=245 Identities=10% Similarity=0.027 Sum_probs=147.5
Q ss_pred HHHHHHHhcCCCEEEeCCCchhH-HHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecC
Q 017114 46 RIISEVARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 124 (377)
Q Consensus 46 ~~~~~i~~~~pDii~~~~~~~~~-~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 124 (377)
.+.+..+..+.+-+++|+..... +.+++..+....++.|++.+..... ....+..+.+..+.+...++...|++ .
T Consensus 69 avi~~a~~~r~~kff~HGqFn~~lwlaLl~g~~~~~k~~WhIWGaDLYe---~~~~~k~rlfy~lRr~aq~rvg~V~a-t 144 (360)
T PF07429_consen 69 AVIAKAKADRADKFFLHGQFNPWLWLALLFGKIKLKKCYWHIWGADLYE---DSRSLKFRLFYFLRRLAQKRVGHVFA-T 144 (360)
T ss_pred HHHHHHhhCccceEEEeccCcHHHHHHHHcCCccccceEEEEeCchhhc---cccccchhHHHHHHHHHHhhcCeEEE-E
Confidence 34445556788889999854333 2333344444556777777643222 12234455556678888888888876 4
Q ss_pred hhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecc-cccccHHHHHHHHHhC--CC
Q 017114 125 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL--PE 201 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~~~l~~a~~~l--~~ 201 (377)
+.....+++.++..+......|..++......... ...+...-+.+|+- ++..+...++++++.. .+
T Consensus 145 ~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~----------~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~ 214 (360)
T PF07429_consen 145 RGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKN----------KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDD 214 (360)
T ss_pred cchHHHHHHHcCCCCceEEEcCCCCchhhhccccc----------cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCC
Confidence 66677777777643444555555454432221110 11233445556644 5666677788877765 46
Q ss_pred ceEEEE---ecC--ccHHHHHHhhcC----CCEEE-ccccCchhHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeE
Q 017114 202 ARIAFI---GDG--PYREELEKMFTG----MPAVF-TGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 202 ~~l~i~---G~g--~~~~~l~~~~~~----~~v~~-~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI 270 (377)
+++++- |++ .+.+++.+.+++ .++.. ..++|.+|..++++.||++++... ..|+|+.+ =.+.+|+||+
T Consensus 215 ~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~-lLl~~G~~v~ 293 (360)
T PF07429_consen 215 VKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNIC-LLLQLGKKVF 293 (360)
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHH-HHHHcCCeEE
Confidence 777663 332 355666665553 25654 579999999999999999999875 56777654 4999999999
Q ss_pred EecCCCCCccccccCCCCeeEEeCC--CCHHHHHHHHHHH
Q 017114 271 GVRAGGIPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPL 308 (377)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~l~~~i~~~ 308 (377)
.+.....-..+ .+.+.-+++.. -|...+.++=+++
T Consensus 294 L~~~np~~~~l---~~~~ipVlf~~d~L~~~~v~ea~rql 330 (360)
T PF07429_consen 294 LSRDNPFWQDL---KEQGIPVLFYGDELDEALVREAQRQL 330 (360)
T ss_pred EecCChHHHHH---HhCCCeEEeccccCCHHHHHHHHHHH
Confidence 88765554445 33333344432 2344444444443
No 127
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.94 E-value=1.4e-07 Score=77.41 Aligned_cols=275 Identities=17% Similarity=0.182 Sum_probs=162.2
Q ss_pred CCcEEEEEeeCCCCCcc---ccCceeecccCCCCCccc-cccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHH
Q 017114 1 MGDEVMVVTTHEGVPQE---FYGAKLIGSRSFPCPWYQ-KVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK 76 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~ 76 (377)
+||+|.+.|...+.-.+ ..|+....+.-....... ++.....-...+.+++.+.+||+.+.-+... +...+.
T Consensus 26 kG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~~~s~~----l~rvaf 101 (346)
T COG1817 26 KGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAIGKHSPE----LPRVAF 101 (346)
T ss_pred CCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEeecCCcc----hhhHHh
Confidence 59999999887653321 122222222111111111 2222233345788899999999988733111 223566
Q ss_pred hhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCC----C
Q 017114 77 LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS----E 152 (377)
Q Consensus 77 ~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~----~ 152 (377)
..|+|.|+...+.... ...+..+..|+.+++++....+.+...+. .+.++ .-.||+-. .
T Consensus 102 gLg~psIi~~D~ehA~---------------~qnkl~~Pla~~ii~P~~~~~~~~~~~G~-~p~~i-~~~~giae~~~v~ 164 (346)
T COG1817 102 GLGIPSIIFVDNEHAE---------------AQNKLTLPLADVIITPEAIDEEELLDFGA-DPNKI-SGYNGIAELANVY 164 (346)
T ss_pred hcCCceEEecCChhHH---------------HHhhcchhhhhheecccccchHHHHHhCC-Cccce-ecccceeEEeecc
Confidence 7889988765442111 12566778899999998887777777765 33343 33455432 2
Q ss_pred CCCCccCchHHHHHhhCCCCCCCeEEEeecc-----cccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEE
Q 017114 153 SFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-----GVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVF 227 (377)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-----~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~ 227 (377)
.|. ++.+..++++...++..+++-.-.+ ...++++.+.++++.+++.-.+++-..... ++..+..++..
T Consensus 165 ~f~---pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~giV~ipr~~~~---~eife~~~n~i 238 (346)
T COG1817 165 GFV---PDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYGIVLIPREKEQ---AEIFEGYRNII 238 (346)
T ss_pred cCC---CCHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCcEEEecCchhH---HHHHhhhcccc
Confidence 233 3456777777655545555533322 345667778888888876666666543222 22233322222
Q ss_pred ccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC---CCCccccccCCCCeeEEeCCCCHHHHHHH
Q 017114 228 TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSK 304 (377)
Q Consensus 228 ~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 304 (377)
.+. +--|-..++-.|++++ .+.|+-.-||+..|+|.|+..-| +..++. -+.|.++...|+.++.+.
T Consensus 239 ~pk-~~vD~l~Llyya~lvi-----g~ggTMarEaAlLGtpaIs~~pGkll~vdk~l-----ie~G~~~~s~~~~~~~~~ 307 (346)
T COG1817 239 IPK-KAVDTLSLLYYATLVI-----GAGGTMAREAALLGTPAISCYPGKLLAVDKYL-----IEKGLLYHSTDEIAIVEY 307 (346)
T ss_pred CCc-ccccHHHHHhhhheee-----cCCchHHHHHHHhCCceEEecCCccccccHHH-----HhcCceeecCCHHHHHHH
Confidence 111 1124445778888888 44577889999999999987633 455555 446788888888888777
Q ss_pred HHHHhhCHH
Q 017114 305 LEPLLYNQE 313 (377)
Q Consensus 305 i~~~~~~~~ 313 (377)
..+.+.++.
T Consensus 308 a~~~l~~~~ 316 (346)
T COG1817 308 AVRNLKYRR 316 (346)
T ss_pred HHHHhhchh
Confidence 777776654
No 128
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.93 E-value=3.5e-07 Score=75.81 Aligned_cols=271 Identities=11% Similarity=0.085 Sum_probs=156.1
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHH-HHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEe
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVF-GALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 122 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~-~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 122 (377)
...+....+..+.+-+++|+.....+ .+++..+..-.++.|++.+.... .....+..+.+..+.+...++..++++
T Consensus 28 a~avi~~a~~~r~~rff~HGqFn~~lwlall~g~~~~~q~yWhiWGaDLY---e~~~~lk~rlfy~lRR~aq~rvg~v~a 104 (322)
T PRK02797 28 AEAVIAKAKANRAQRFFLHGQFNPTLWLALLSGKIKPKQFYWHIWGADLY---EESKGLKFRLFYPLRRLAQKRVGHVFA 104 (322)
T ss_pred HHHHHHHHhhCccceEEEecCCCHHHHHHHHhCCcCccceEEEEEChhhh---hcccchhHHHHHHHHHHHHhhcCeEEE
Confidence 34455555557888888988533322 23333343444667766653322 222455566777788999999999999
Q ss_pred cChhHHHHH-HHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecc-cccccHHHHHHHHHhC-
Q 017114 123 PSVAIGKDL-EAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL- 199 (377)
Q Consensus 123 ~s~~~~~~~-~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~~~l~~a~~~l- 199 (377)
.......+ ++.+..+ .+....|.-.+... .....+ ..++....+.+|+- ++..+...+++++++.
T Consensus 105 -trGD~~~~a~~~~~v~-~~llyfpt~m~~~l-~~~~~~---------~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~ 172 (322)
T PRK02797 105 -TRGDLSYFAQRHPKVP-GSLLYFPTRMDPSL-NTMAND---------RQRAGKMTILVGNSGDRSNRHIEALRALHQQF 172 (322)
T ss_pred -ecchHHHHHHhcCCCC-ccEEecCCcchhhh-cccccc---------ccCCCceEEEEeCCCCCcccHHHHHHHHHHHh
Confidence 44445554 4444433 34434443332221 111110 11223455556654 5666677888888766
Q ss_pred -CCceEEEE-----ecCccHHHHHHhhcCC----CE-EEccccCchhHHHHHhcCCEEEeccC-CcccchHHHHHHhcCC
Q 017114 200 -PEARIAFI-----GDGPYREELEKMFTGM----PA-VFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGI 267 (377)
Q Consensus 200 -~~~~l~i~-----G~g~~~~~l~~~~~~~----~v-~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~ 267 (377)
.++++++. |+..+.+++.+.+++. ++ ....+++.+|...+++.||++++... ..|+|+.++ .+.+|+
T Consensus 173 ~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~l-Li~~G~ 251 (322)
T PRK02797 173 GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCL-LIQLGK 251 (322)
T ss_pred CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHH-HHHCCC
Confidence 46777663 2334566666655432 44 45678899999999999999998764 677776554 899999
Q ss_pred CeEEec-CCCCCccccccCCCCeeEEeCCCCH--HHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017114 268 PVVGVR-AGGIPDIIPEDQDGKIGYLFNPGDL--DDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 268 PvI~~~-~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~ 344 (377)
||+.+. .+...++. +.+ .-++++.++. ..+.++ .+++...-++.+. |+.+...+.+. .++.
T Consensus 252 ~v~l~r~n~fwqdl~---e~g-v~Vlf~~d~L~~~~v~e~----------~rql~~~dk~~I~-Ff~pn~~~~W~-~~l~ 315 (322)
T PRK02797 252 PVVLSRDNPFWQDLT---EQG-LPVLFTGDDLDEDIVREA----------QRQLASVDKNIIA-FFSPNYLQGWR-NALA 315 (322)
T ss_pred cEEEecCCchHHHHH---hCC-CeEEecCCcccHHHHHHH----------HHHHHhhCcceee-ecCHhHHHHHH-HHHH
Confidence 998875 55555554 333 3343443332 112111 1222222223223 88888888887 4655
Q ss_pred HH
Q 017114 345 AA 346 (377)
Q Consensus 345 ~~ 346 (377)
.+
T Consensus 316 ~~ 317 (322)
T PRK02797 316 IA 317 (322)
T ss_pred Hh
Confidence 54
No 129
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.80 E-value=2.5e-07 Score=82.53 Aligned_cols=271 Identities=13% Similarity=0.081 Sum_probs=124.5
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHh
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 134 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 134 (377)
+.+++++.+.... + ....+..+.++|...|+. +...-+....... ..........+..|.+++.|+...+.+.+.
T Consensus 78 ~Ak~~i~~~~~~~-~--~~~~~~~~~~~i~lwHG~-~~K~~g~~~~~~~-~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~ 152 (369)
T PF04464_consen 78 RAKYIISDSYFPD-L--IYFKKRKNQKYIQLWHGI-PLKKIGYDSPDNK-NYRKNYKRNYRNYDYFIVSSEFEKEIFKKA 152 (369)
T ss_dssp HEEEEEESS---T-----TS---TTSEEEE--SS---SB--GGG-S----TS-HHHHHHHTT-SEEEESSHHHHHHHHHH
T ss_pred hCcEEEECCCCCc-c--cccccCCCcEEEEecCCC-cccccchhccccc-cchhhhhhhccCCcEEEECCHHHHHHHHHH
Confidence 4577777642211 1 113345677889889997 3322111100000 001134556788999999999999999998
Q ss_pred cccCCCcEEEecCCCCCCCCCCccCc-hHHHHHhhCCCCCCCeEEEeecccccccH------------HHHHHHHHhCCC
Q 017114 135 RVTAANKIRIWKKGVDSESFHPRFRS-SEMRWRLSNGEPDKPLIVHVGRLGVEKSL------------DFLKRVMDRLPE 201 (377)
Q Consensus 135 ~~~~~~~i~~i~~gv~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~~~~~k~~------------~~l~~a~~~l~~ 201 (377)
++.+.+++.+...+-....+...... ......+.. ..++.+|+|+-++...... +.+. ...-++
T Consensus 153 f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~-~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~--~~~~~~ 229 (369)
T PF04464_consen 153 FGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGI-DKDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLN--FLLKNN 229 (369)
T ss_dssp TT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT---SS-EEEEEE----GGG--GGSS----TT-HHHHH--HHHTTT
T ss_pred hccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhcc-CCCCcEEEEeeccccccccccccccccccCHHHHH--HHhCCC
Confidence 87666666655432221112221111 223333332 3456688888766443222 2222 122257
Q ss_pred ceEEEEecCccHHHHHH-hhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe--cCCCC-
Q 017114 202 ARIAFIGDGPYREELEK-MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV--RAGGI- 277 (377)
Q Consensus 202 ~~l~i~G~g~~~~~l~~-~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~--~~~~~- 277 (377)
+.+++-........... .....+|.+...- .++.+++..||++|. -++..++|++.+++|||.. |....
T Consensus 230 ~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll~~aDiLIT-----DySSi~fD~~~l~KPiify~~D~~~Y~ 302 (369)
T PF04464_consen 230 YVLIIKPHPNMKKKFKDFKEDNSNIIFVSDN--EDIYDLLAAADILIT-----DYSSIIFDFLLLNKPIIFYQPDLEEYE 302 (369)
T ss_dssp EEEEE--SHHHHTT----TT-TTTEEE-TT---S-HHHHHHT-SEEEE-----SS-THHHHHGGGT--EEEE-TTTTTTT
T ss_pred cEEEEEeCchhhhchhhhhccCCcEEECCCC--CCHHHHHHhcCEEEE-----echhHHHHHHHhCCCEEEEeccHHHHh
Confidence 77776663222222221 1123356655433 589999999999994 3478999999999999954 33211
Q ss_pred --CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017114 278 --PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQ 342 (377)
Q Consensus 278 --~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l 342 (377)
+.+.....+...|..+. +.++|.++|..+++++....+..+...+..-.|.-.+.++++.+.+
T Consensus 303 ~~rg~~~~~~~~~pg~~~~--~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 303 KERGFYFDYEEDLPGPIVY--NFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYI 367 (369)
T ss_dssp TTSSBSS-TTTSSSS-EES--SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHH
T ss_pred hccCCCCchHhhCCCceeC--CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 11110112333455554 8899999999988776554433333333322244445555555443
No 130
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.80 E-value=3.8e-07 Score=81.57 Aligned_cols=153 Identities=15% Similarity=0.165 Sum_probs=101.0
Q ss_pred CCCeEEEeeccccc-ccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 173 DKPLIVHVGRLGVE-KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 173 ~~~~i~~~G~~~~~-k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
.+++.+..|+.... .-+..+++++..+ +.++++...+ ....+. .-..|+...+++|+.+ ++..||++|
T Consensus 237 ~~~vyvslGt~~~~~~l~~~~~~a~~~l-~~~vi~~~~~-~~~~~~--~~p~n~~v~~~~p~~~---~l~~ad~vI---- 305 (406)
T COG1819 237 RPIVYVSLGTVGNAVELLAIVLEALADL-DVRVIVSLGG-ARDTLV--NVPDNVIVADYVPQLE---LLPRADAVI---- 305 (406)
T ss_pred CCeEEEEcCCcccHHHHHHHHHHHHhcC-CcEEEEeccc-cccccc--cCCCceEEecCCCHHH---HhhhcCEEE----
Confidence 44455566666543 2244556666665 5666666533 221122 2244888999997665 789999999
Q ss_pred CcccchHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeC--CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 017114 252 SETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFN--PGDLDDCLSKLEPLLYNQELRETMGQAARQE 325 (377)
Q Consensus 252 ~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 325 (377)
..|..+++.||+.+|+|+|+-..+ ...+.+ ++-+.|.... ..+.+.++++|.+++.|+..++...+..+..
T Consensus 306 ~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv---e~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~ 382 (406)
T COG1819 306 HHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV---EELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEF 382 (406)
T ss_pred ecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH---HHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445578999999999999976544 234455 6667787776 5789999999999999988776665554444
Q ss_pred HHhcCHHHHHHHHH
Q 017114 326 MEKYDWRAATRTIR 339 (377)
Q Consensus 326 ~~~~s~~~~~~~~~ 339 (377)
.+.-..+..++.+.
T Consensus 383 ~~~~g~~~~a~~le 396 (406)
T COG1819 383 KEEDGPAKAADLLE 396 (406)
T ss_pred hhcccHHHHHHHHH
Confidence 44445444444433
No 131
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.77 E-value=5.6e-07 Score=80.18 Aligned_cols=172 Identities=16% Similarity=0.229 Sum_probs=104.9
Q ss_pred CCCCCeEEEeeccccc--ccHHHHHHHHHhCCCceEEEEecCc-cHHHHHHhhcC-----CCEEEccccCchhHHHHHhc
Q 017114 171 EPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAFIGDGP-YREELEKMFTG-----MPAVFTGMLLGEELSQAYAS 242 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~~--k~~~~l~~a~~~l~~~~l~i~G~g~-~~~~l~~~~~~-----~~v~~~g~~~~~~~~~~~~~ 242 (377)
+++.++++++.++.+. .-++...++++..|+.+|.+...+. ..+.+++.+.+ .++.|.+..+.++....++.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 3455556666655432 2355556777778999998876433 23444444432 26899999888888889999
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcccccc--CC-CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHH
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED--QD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 319 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~--~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 319 (377)
+|+++-+.. -+.+++.+||+.+|+|||+-....+..-.... .. |-..++. .|.++..+...++..|++.++.++
T Consensus 362 ~DI~LDT~p-~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA--~s~~eYv~~Av~La~D~~~l~~lR 438 (468)
T PF13844_consen 362 ADICLDTFP-YNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA--DSEEEYVEIAVRLATDPERLRALR 438 (468)
T ss_dssp -SEEE--SS-S--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB---SSHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCEEeeCCC-CCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC--CCHHHHHHHHHHHhCCHHHHHHHH
Confidence 999997643 34578999999999999976543322211000 00 1112233 388999999999999999999999
Q ss_pred HHHHHHH-H--hcCHHHHHHHHHHHHHHHH
Q 017114 320 QAARQEM-E--KYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 320 ~~~~~~~-~--~~s~~~~~~~~~~~ly~~~ 346 (377)
++-++.. + -|+....+++++ ..|+.+
T Consensus 439 ~~Lr~~~~~SpLfd~~~~ar~lE-~a~~~m 467 (468)
T PF13844_consen 439 AKLRDRRSKSPLFDPKRFARNLE-AAYRQM 467 (468)
T ss_dssp HHHHHHHHHSGGG-HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHhhCCCCCHHHHHHHHH-HHHHHh
Confidence 9988776 3 289999999998 688764
No 132
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.70 E-value=6e-07 Score=77.96 Aligned_cols=179 Identities=13% Similarity=0.051 Sum_probs=106.5
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHhh--CCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHH
Q 017114 54 FKPDIIHASSPGIMVFGALIIAKLL--CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDL 131 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~~~~--~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 131 (377)
.+||++++-+.+.+.+.....++.. |+|+++.+--.... |.. ...+.+.+.+|.+++.-+...+.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~PqvWA--------Wr~----~R~~~i~k~~d~vl~ifPFE~~~y 142 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQVWA--------WKK----GRAKILEKYCDFLASILPFEVQFY 142 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcccee--------eCc----chHHHHHHHHhhhhccCCCCHHHh
Confidence 5999998866443433323344555 79998765432211 111 124566778888888777666655
Q ss_pred HHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccc--cccHHHHHHHHHhCCC--ceEEEE
Q 017114 132 EAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPE--ARIAFI 207 (377)
Q Consensus 132 ~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~--~~l~i~ 207 (377)
+ .+..++.|++-.. .... .. . . .+++.+.++.|+-.. .+.+..+++++..+.+ ..+++.
T Consensus 143 ----g---~~~~~VGhPl~d~-~~~~--~~----~--~-~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~ 205 (347)
T PRK14089 143 ----Q---SKATYVGHPLLDE-IKEF--KK----D--L-DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVP 205 (347)
T ss_pred ----C---CCCEEECCcHHHh-hhhh--hh----h--c-CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 2 2566888875322 1111 00 0 1 223455566665432 2445666788877733 566777
Q ss_pred ecCccHHHHHHhhcC-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 208 GDGPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 208 G~g~~~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
|.... +.+++...+ ..+.+. ++..++|+.||+.+..| |++.+|++.+|+|.|..
T Consensus 206 ~a~~~-~~i~~~~~~~~~~~~~-----~~~~~~m~~aDlal~~S-----GT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 206 SFFKG-KDLKEIYGDISEFEIS-----YDTHKALLEAEFAFICS-----GTATLEAALIGTPFVLA 260 (347)
T ss_pred CCCcH-HHHHHHHhcCCCcEEe-----ccHHHHHHhhhHHHhcC-----cHHHHHHHHhCCCEEEE
Confidence 75433 555554433 233333 25678999999999777 88888999999998864
No 133
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.66 E-value=0.00015 Score=65.26 Aligned_cols=249 Identities=11% Similarity=0.066 Sum_probs=138.7
Q ss_pred HHHHHHHhcCCCEEEeCCCchh-------HHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCC
Q 017114 46 RIISEVARFKPDIIHASSPGIM-------VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 118 (377)
Q Consensus 46 ~~~~~i~~~~pDii~~~~~~~~-------~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 118 (377)
.+.+.++ +.|+++..+...+ .+...+.++..|+|+++.-++..|.. ....+.+.+++++++|
T Consensus 110 ~~~~~l~--~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~---------~~~~r~l~r~vl~~~~ 178 (426)
T PRK10017 110 DFVRLLS--GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQ---------DEQFNQLANYVFGHCD 178 (426)
T ss_pred HHHHHHH--hCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcC---------CHHHHHHHHHHHhcCC
Confidence 3444455 6799988653221 12234577889999999887765542 2334567888999999
Q ss_pred eeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCch-----HHHHHhhCCCCCCCeEEE-eeccccc-c----
Q 017114 119 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-----EMRWRLSNGEPDKPLIVH-VGRLGVE-K---- 187 (377)
Q Consensus 119 ~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~-~G~~~~~-k---- 187 (377)
.|.+=.+...+.+++.+. ...++.+.+..+ +.-+..... .....+. ....+..|++ +..+.+. +
T Consensus 179 ~ItvRD~~S~~~Lk~lGv-~~~~v~~~aDpA---F~L~~~~~~~~~~~~~~~~~~-~~~~~~~Vgisvr~~~~~~~~~~~ 253 (426)
T PRK10017 179 ALILRESVSLDLMKRSNI-TTAKVEHGVDTA---WLVDHHTEDFTASYAVQHWLD-VAAQQKTVAITLRELAPFDKRLGT 253 (426)
T ss_pred EEEEccHHHHHHHHHhCC-CccceEEecChh---hhCCccccccccchhhhhhhc-ccccCCEEEEEecccccccccccc
Confidence 999988888888888764 445676665433 211111000 0000111 1122334433 3333211 1
Q ss_pred ----cHHHHHHHHHhC--CCceEEEEec-------Cc-cH---HHHHHhhcCC-CEE-EccccCchhHHHHHhcCCEEEe
Q 017114 188 ----SLDFLKRVMDRL--PEARIAFIGD-------GP-YR---EELEKMFTGM-PAV-FTGMLLGEELSQAYASGDVFVM 248 (377)
Q Consensus 188 ----~~~~l~~a~~~l--~~~~l~i~G~-------g~-~~---~~l~~~~~~~-~v~-~~g~~~~~~~~~~~~~adi~v~ 248 (377)
-...+.++++.+ .+.+++++.. ++ +. ..+.+...+. +++ +.+..+..|+..++++||++|.
T Consensus 254 ~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig 333 (426)
T PRK10017 254 TQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVG 333 (426)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEE
Confidence 123344444443 3566655542 11 22 2233333222 232 3444455788899999999984
Q ss_pred ccCCcccchHHHHHHhcCCCeEEecCC-CCCccccccCC-CCeeEEe--CCCCHHHHHHHHHHHhhCHHHHHHH
Q 017114 249 PSESETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPEDQD-GKIGYLF--NPGDLDDCLSKLEPLLYNQELRETM 318 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~PvI~~~~~-~~~~~~~~~~~-~~~g~~~--~~~~~~~l~~~i~~~~~~~~~~~~~ 318 (377)
.-. -.++=|++.|+|+|+-... -...++ ++ +...++. ..-+.+++.+.+.+++++.+..++.
T Consensus 334 ~Rl-----Ha~I~a~~~gvP~i~i~Y~~K~~~~~---~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~ 399 (426)
T PRK10017 334 TRL-----HSAIISMNFGTPAIAINYEHKSAGIM---QQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNAR 399 (426)
T ss_pred ecc-----hHHHHHHHcCCCEEEeeehHHHHHHH---HHcCCccEEechhhCCHHHHHHHHHHHHhCHHHHHHH
Confidence 432 3677799999999976542 233333 11 2122323 3346788999999999987655443
No 134
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.6e-06 Score=73.92 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=155.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCch-hHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEec
Q 017114 45 PRIISEVARFKPDIIHASSPGI-MVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
..+.+.|+.-..||.+--+... ..... +...+-.|+.++.-++.... +.... -+--+|..+.+
T Consensus 325 ~e~a~~I~~d~IdILvDl~g~T~d~r~~--v~A~RpAPiqvswlGy~aT~-g~p~~-------------DY~I~D~y~vP 388 (620)
T COG3914 325 AEIANAIRTDGIDILVDLDGHTVDTRCQ--VFAHRPAPIQVSWLGYPATT-GSPNM-------------DYFISDPYTVP 388 (620)
T ss_pred HHHHHHHHhcCCeEEEeccCceeccchh--hhhcCCCceEEeeccccccc-CCCcc-------------eEEeeCceecC
Confidence 4567777888899887644322 22222 22234468877665543221 10000 01125555555
Q ss_pred ChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccccccc--HHHHHHHHHhCCC
Q 017114 124 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS--LDFLKRVMDRLPE 201 (377)
Q Consensus 124 s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~--~~~l~~a~~~l~~ 201 (377)
+...+++.++-. ++-..+-++|- +.+..++ -.|..++ .+++.++++++++..+.-. ++.-.+.++..|+
T Consensus 389 -p~ae~yysEkl~----RLp~cy~p~d~--~~~v~p~-~sR~~lg-lp~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~ 459 (620)
T COG3914 389 -PTAEEYYSEKLW----RLPQCYQPVDG--FEPVTPP-PSRAQLG-LPEDAVVFCCFNNYFKITPEVFALWMQILSAVPN 459 (620)
T ss_pred -chHHHHHHHHHH----hcccccCCCCC--cccCCCC-cchhhcC-CCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCC
Confidence 555566655432 11112222332 2222111 1111222 2344455555555433221 3444566677799
Q ss_pred ceEEEEecCccH---HHHHHhhcCC-----CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 202 ARIAFIGDGPYR---EELEKMFTGM-----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 202 ~~l~i~G~g~~~---~~l~~~~~~~-----~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
-.|.+.|.|+.. ..+++++++. ++.|.+..++++....|..||+++-+.- .+..++..|++.+|+|||+-.
T Consensus 460 Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyP-Y~g~TTa~daLwm~vPVlT~~ 538 (620)
T COG3914 460 SVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYP-YGGHTTASDALWMGVPVLTRV 538 (620)
T ss_pred cEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeeccc-CCCccchHHHHHhcCceeeec
Confidence 999999876433 3555555543 6899999999999999999999985543 344678999999999999642
Q ss_pred CCCC-----CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHH
Q 017114 274 AGGI-----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME---KYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 274 ~~~~-----~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~ly~~ 345 (377)
.... ..++. .-|-.-.+.. |.++..+.-..+-.|...+++.+..-++..+ -|+.+.+++++. .+|..
T Consensus 539 G~~FasR~~~si~~--~agi~e~vA~--s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le-~~y~~ 613 (620)
T COG3914 539 GEQFASRNGASIAT--NAGIPELVAD--SRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLE-TLYWG 613 (620)
T ss_pred cHHHHHhhhHHHHH--hcCCchhhcC--CHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHH-HHHHH
Confidence 1111 01110 1111222232 6677777766776777777766655444443 289999999998 69988
Q ss_pred HHHHH
Q 017114 346 AIWFW 350 (377)
Q Consensus 346 ~~~~~ 350 (377)
..+..
T Consensus 614 M~~~y 618 (620)
T COG3914 614 MWSEY 618 (620)
T ss_pred HHHhh
Confidence 87643
No 135
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.57 E-value=0.00012 Score=67.12 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=86.9
Q ss_pred CCCeEEEeecccc--cccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 173 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
...+.+.+|+... ...+..++++++.. +..++++..++ ...+.+.. ..++.+.+++|+.++ |...++..+-
T Consensus 274 ~~vvyvsfGs~~~~~~~~~~~~~~~l~~~-~~~~lw~~~~~-~~~~~~~~-~~~~~v~~w~pQ~~i---L~h~~v~~fv- 346 (459)
T PLN02448 274 GSVLYVSLGSFLSVSSAQMDEIAAGLRDS-GVRFLWVARGE-ASRLKEIC-GDMGLVVPWCDQLKV---LCHSSVGGFW- 346 (459)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCc-hhhHhHhc-cCCEEEeccCCHHHH---hccCccceEE-
Confidence 4467777887632 23467777777776 56777665433 12233322 236777899987775 5556653222
Q ss_pred CCcccchHHHHHHhcCCCeEEecCC----CCCccccccCC-CCeeEEeC-------CCCHHHHHHHHHHHhhCH-HHHHH
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQD-GKIGYLFN-------PGDLDDCLSKLEPLLYNQ-ELRET 317 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~-~~~g~~~~-------~~~~~~l~~~i~~~~~~~-~~~~~ 317 (377)
..+..++++||+++|+|+|+.... .....+ .+ -+.|+-+. .-+.+++++++++++.++ +.-++
T Consensus 347 -tHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v---~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~ 422 (459)
T PLN02448 347 -THCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLI---VEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKE 422 (459)
T ss_pred -ecCchhHHHHHHHcCCCEEeccccccchhhHHHH---HHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHH
Confidence 345567999999999999987543 233333 22 13455442 237799999999999864 33445
Q ss_pred HHHHHHHH
Q 017114 318 MGQAARQE 325 (377)
Q Consensus 318 ~~~~~~~~ 325 (377)
+++++.+.
T Consensus 423 ~r~~a~~~ 430 (459)
T PLN02448 423 MRRRAKEL 430 (459)
T ss_pred HHHHHHHH
Confidence 55555444
No 136
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=5.3e-06 Score=71.53 Aligned_cols=105 Identities=23% Similarity=0.292 Sum_probs=69.2
Q ss_pred hHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcccccc-CC-CCeeEEeC-------CCCHHHHHHHH
Q 017114 235 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED-QD-GKIGYLFN-------PGDLDDCLSKL 305 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~-~~-~~~g~~~~-------~~~~~~l~~~i 305 (377)
|..++.+.|+++|+||++|++|.+..|+-.+|+|-|+++..|..-+.++. ++ ...|+.+- .++.+.+++.+
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m 572 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFM 572 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHH
Confidence 67789999999999999999999999999999999999987654333211 22 22454432 23455566655
Q ss_pred HHHhhCHHHHHHHHHHHHHH-H-HhcCHHHHHHHHHH
Q 017114 306 EPLLYNQELRETMGQAARQE-M-EKYDWRAATRTIRN 340 (377)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~-~-~~~s~~~~~~~~~~ 340 (377)
.+... ...++++.++.+.. + .-.+|..+...|.+
T Consensus 573 ~~F~~-qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~ 608 (692)
T KOG3742|consen 573 YEFCK-QSRRQRIIQRNRTERLSDLLDWKYLGRYYRK 608 (692)
T ss_pred HHHHH-HHHHHHHHHhcchhhHHHHHhHHHHhHHHHH
Confidence 55543 33344444443332 3 34788887776663
No 137
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.29 E-value=0.00013 Score=61.50 Aligned_cols=295 Identities=15% Similarity=0.087 Sum_probs=157.8
Q ss_pred CCcEEEEEeeCCCCC--ccccCceeecccCCCCCccccc-----cccccch-----HHHHHHHHhcCCCEEEeCCCchhH
Q 017114 1 MGDEVMVVTTHEGVP--QEFYGAKLIGSRSFPCPWYQKV-----PLSLALS-----PRIISEVARFKPDIIHASSPGIMV 68 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~i~~~~pDii~~~~~~~~~ 68 (377)
.|.+|++++..+... .-..+++.+.++.+........ ....... .-+...++..+||++++...+...
T Consensus 40 ~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Gl 119 (400)
T COG4671 40 LGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLEETKKLRSQLILSTAETFKPDIFIVDKFPFGL 119 (400)
T ss_pred cCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccccch
Confidence 489999999876432 2334566555554422211111 0111111 235566788999999997643221
Q ss_pred ----HHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccC-CCcEE
Q 017114 69 ----FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTA-ANKIR 143 (377)
Q Consensus 69 ----~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~~~i~ 143 (377)
...+...+..+.+.++-..+.... .......|. ..-.+..+-++.|.|++..+..-..+...+... .-+-.
T Consensus 120 r~EL~ptL~yl~~~~t~~vL~lr~i~D~-p~~~~~~w~---~~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k 195 (400)
T COG4671 120 RFELLPTLEYLKTTGTRLVLGLRSIRDI-PQELEADWR---RAETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAK 195 (400)
T ss_pred hhhhhHHHHHHhhcCCcceeehHhhhhc-hhhhccchh---hhHHHHHHHHhheEEEEecCccccChhhcCCccHhhhhh
Confidence 223334455565665555553211 111111111 124567778899999998876554444444321 11222
Q ss_pred EecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecc-cccccHHHHHHHHHhCCCce---EEEEecCc---cHHHH
Q 017114 144 IWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRLPEAR---IAFIGDGP---YREEL 216 (377)
Q Consensus 144 ~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~~~l~~a~~~l~~~~---l~i~G~g~---~~~~l 216 (377)
+.+.|.=-....-...+.. ..+++..+++.+|.- +...-++.++.|...+++++ +++.|..- ..+.+
T Consensus 196 ~~ytG~vq~~~~~~~~p~~------~~pE~~~Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l 269 (400)
T COG4671 196 MRYTGFVQRSLPHLPLPPH------EAPEGFDILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKL 269 (400)
T ss_pred eeEeEEeeccCcCCCCCCc------CCCccceEEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHH
Confidence 3333332110000000000 013455667777743 33444667777777777655 45556332 33444
Q ss_pred HHhhc-CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC-CCcccccc----CCCCee
Q 017114 217 EKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG-IPDIIPED----QDGKIG 290 (377)
Q Consensus 217 ~~~~~-~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~-~~~~~~~~----~~~~~g 290 (377)
.+.+. ..+|.+..|. +++..++..|+..|.-.- =++++|-++.|+|.+.-.... -.|..... +-+-..
T Consensus 270 ~~~A~~~p~i~I~~f~--~~~~~ll~gA~~vVSm~G----YNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~d 343 (400)
T COG4671 270 LASAPKRPHISIFEFR--NDFESLLAGARLVVSMGG----YNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVD 343 (400)
T ss_pred HHhcccCCCeEEEEhh--hhHHHHHHhhheeeeccc----chhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcce
Confidence 44443 2479999988 899999999999995432 368999999999987665432 22221100 112122
Q ss_pred EEeC-CCCHHHHHHHHHHHhhC
Q 017114 291 YLFN-PGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 291 ~~~~-~~~~~~l~~~i~~~~~~ 311 (377)
.+.+ .-+++.++++|..+++.
T Consensus 344 vL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 344 VLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred eeCcccCChHHHHHHHHhcccC
Confidence 2222 23578899999888773
No 138
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.28 E-value=3.1e-05 Score=63.11 Aligned_cols=137 Identities=9% Similarity=0.102 Sum_probs=81.5
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEE-Eec-CccHHHHHHhhcC-CCEEEccccCchhHHHHHhcCCEEEec
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAF-IGD-GPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMP 249 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i-~G~-g~~~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~v~p 249 (377)
.+-+++..|.-++..-.-.++..+..- ++.+.| +|+ .+..+.+++.++. .++.+.-.. ++++++|++||+.+..
T Consensus 158 ~r~ilI~lGGsDpk~lt~kvl~~L~~~-~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~--~dma~LMke~d~aI~A 234 (318)
T COG3980 158 KRDILITLGGSDPKNLTLKVLAELEQK-NVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDT--NDMAELMKEADLAISA 234 (318)
T ss_pred hheEEEEccCCChhhhHHHHHHHhhcc-CeeEEEEecCCCcchhHHHHHHhhCCCeeeEecc--hhHHHHHHhcchheec
Confidence 444677777766543333334433333 345544 453 3455566665554 467776665 8999999999999854
Q ss_pred cCCcccchHHHHHHhcCCCeEE----ecCCCCCccccccCCCCeeEEeCC---CCHHHHHHHHHHHhhCHHHHHHHHHHH
Q 017114 250 SESETLGLVVLEAMSSGIPVVG----VRAGGIPDIIPEDQDGKIGYLFNP---GDLDDCLSKLEPLLYNQELRETMGQAA 322 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~PvI~----~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~ 322 (377)
. |.++.|++..|+|.++ .+.......+ ...|+..+. .........+.++..|+..+..+....
T Consensus 235 a-----GstlyEa~~lgvP~l~l~~a~NQ~~~a~~f-----~~lg~~~~l~~~l~~~~~~~~~~~i~~d~~~rk~l~~~~ 304 (318)
T COG3980 235 A-----GSTLYEALLLGVPSLVLPLAENQIATAKEF-----EALGIIKQLGYHLKDLAKDYEILQIQKDYARRKNLSFGS 304 (318)
T ss_pred c-----chHHHHHHHhcCCceEEeeeccHHHHHHHH-----HhcCchhhccCCCchHHHHHHHHHhhhCHHHhhhhhhcc
Confidence 3 8999999999999432 2322333333 112222221 244566677777888887766655443
No 139
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.23 E-value=1.4e-07 Score=73.91 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=68.8
Q ss_pred CceEE-EEecCccHHHHHHhhcC--CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC-
Q 017114 201 EARIA-FIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG- 276 (377)
Q Consensus 201 ~~~l~-i~G~g~~~~~l~~~~~~--~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~- 276 (377)
+++++ ++|.....+.... ... .+|.+.++. +++.++|+.||++|. .+.++++.|++++|+|.|.-+.+.
T Consensus 31 ~~~viv~~G~~~~~~~~~~-~~~~~~~v~~~~~~--~~m~~~m~~aDlvIs----~aG~~Ti~E~l~~g~P~I~ip~~~~ 103 (167)
T PF04101_consen 31 NIQVIVQTGKNNYEELKIK-VENFNPNVKVFGFV--DNMAELMAAADLVIS----HAGAGTIAEALALGKPAIVIPLPGA 103 (167)
T ss_dssp HCCCCCCCTTCECHHHCCC-HCCTTCCCEEECSS--SSHHHHHHHHSEEEE----CS-CHHHHHHHHCT--EEEE--TTT
T ss_pred CcEEEEEECCCcHHHHHHH-HhccCCcEEEEech--hhHHHHHHHcCEEEe----CCCccHHHHHHHcCCCeeccCCCCc
Confidence 34554 4565543333333 333 479999998 679999999999983 344689999999999998766555
Q ss_pred -------CCccccccCCCCeeEEeCC--CCHHHHHHHHHHHhhCHHHHHHHHHH
Q 017114 277 -------IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQA 321 (377)
Q Consensus 277 -------~~~~~~~~~~~~~g~~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~ 321 (377)
....+ .+...+..+.. .+++.|.++|..++.++.....+.++
T Consensus 104 ~~~~q~~na~~~---~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 104 ADNHQEENAKEL---AKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp -T-CHHHHHHHH---HHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred chHHHHHHHHHH---HHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 12223 22333333332 24688999999999998776555444
No 140
>PLN02208 glycosyltransferase family protein
Probab=98.20 E-value=0.0038 Score=56.73 Aligned_cols=204 Identities=10% Similarity=0.064 Sum_probs=106.3
Q ss_pred HHhcCCeeEecChhHHHH-HHHhcccC-CCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHH
Q 017114 113 LHRAADLTLVPSVAIGKD-LEAARVTA-ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD 190 (377)
Q Consensus 113 ~~~~~d~ii~~s~~~~~~-~~~~~~~~-~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~ 190 (377)
....+|.+++.|-...+. +.+....+ ..++..|..-..... .....+.+...-+...+++..+.+.+|+...- ..+
T Consensus 190 ~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~-~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l-~~~ 267 (442)
T PLN02208 190 GLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPD-TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIIL-EKD 267 (442)
T ss_pred hhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcC-CCCCCHHHHHHHHhcCCCCcEEEEeccccccC-CHH
Confidence 356788998887554442 22222111 124444442211110 00111223333333333355677778876421 222
Q ss_pred HHHHH-----HHhCCCceEEEEec-C--c----cHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchH
Q 017114 191 FLKRV-----MDRLPEARIAFIGD-G--P----YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 258 (377)
Q Consensus 191 ~l~~a-----~~~l~~~~l~i~G~-g--~----~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~ 258 (377)
.+.++ +..+| +.+++--. + . ..+.+.+..++.++.+.+|+|+.++ |+...+..+-+ .+.-++
T Consensus 268 q~~e~~~~l~~s~~p-f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~i---L~H~~v~~Fvt--HcG~nS 341 (442)
T PLN02208 268 QFQELCLGMELTGLP-FLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLI---LDHPSIGCFVN--HCGPGT 341 (442)
T ss_pred HHHHHHHHHHhCCCc-EEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHH---hcCCccCeEEc--cCCchH
Confidence 23332 33333 33333211 1 1 1223334444568888899988775 55666533333 355679
Q ss_pred HHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeCC-----CCHHHHHHHHHHHhhCH-HHHHHHHHHHHHHH
Q 017114 259 VLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP-----GDLDDCLSKLEPLLYNQ-ELRETMGQAARQEM 326 (377)
Q Consensus 259 ~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~~-----~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~ 326 (377)
++||+++|+|+|+...- .....+. +..+.|+.+.. -+.+++.++|+++++++ +..+++++++++..
T Consensus 342 ~~Eai~~GVP~l~~P~~~DQ~~na~~~~--~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~ 417 (442)
T PLN02208 342 IWESLVSDCQMVLIPFLSDQVLFTRLMT--EEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLK 417 (442)
T ss_pred HHHHHHcCCCEEecCcchhhHHHHHHHH--HHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 99999999999987543 2233320 22455666642 36789999999999765 44566666665543
No 141
>PLN02670 transferase, transferring glycosyl groups
Probab=98.14 E-value=0.00012 Score=66.72 Aligned_cols=163 Identities=9% Similarity=0.058 Sum_probs=99.3
Q ss_pred CCCCeEEEeeccc--ccccHHHHHHHHHhCCCceEEEEecCc----------cHHHHHHhhcCCCEEEccccCchhHHHH
Q 017114 172 PDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIGDGP----------YREELEKMFTGMPAVFTGMLLGEELSQA 239 (377)
Q Consensus 172 ~~~~~i~~~G~~~--~~k~~~~l~~a~~~l~~~~l~i~G~g~----------~~~~l~~~~~~~~v~~~g~~~~~~~~~~ 239 (377)
+...+.+.+|+.. ....+..+..+++..+. .|+.+-..+ ..+.+.+..++.++.+.+|+|+.++
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~-~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~I--- 352 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSET-PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKI--- 352 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCC-CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHH---
Confidence 3456677778764 33456777788887755 454442211 1122333344446888899988775
Q ss_pred HhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeCC------CCHHHHHHHHHHHh
Q 017114 240 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP------GDLDDCLSKLEPLL 309 (377)
Q Consensus 240 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~~------~~~~~l~~~i~~~~ 309 (377)
++...+..+- ..+.-++++||+++|+|+|+.... .....+ .+.+.|+.+.. -+.+++.+++++++
T Consensus 353 L~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v---~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm 427 (472)
T PLN02670 353 LSHESVGGFL--THCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLL---HGKKLGLEVPRDERDGSFTSDSVAESVRLAM 427 (472)
T ss_pred hcCcccceee--ecCCcchHHHHHHcCCCEEeCcchhccHHHHHHH---HHcCeeEEeeccccCCcCcHHHHHHHHHHHh
Confidence 5555553332 335567999999999999987532 334444 34567776642 35899999999999
Q ss_pred hCHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHH
Q 017114 310 YNQELRETMGQAARQEMEKY----DWRAATRTIRNEQYN 344 (377)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~----s~~~~~~~~~~~ly~ 344 (377)
.+++ -.++++++++..+.+ +.+++++.+.+.+++
T Consensus 428 ~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 428 VDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred cCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 7742 234555555554443 555555555544443
No 142
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=98.11 E-value=4.5e-05 Score=58.69 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=81.7
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccc---------cchHHHHHHHHh--cCCCEEEeCCCchhHH
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSL---------ALSPRIISEVAR--FKPDIIHASSPGIMVF 69 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~--~~pDii~~~~~~~~~~ 69 (377)
+||+|..+|........ .+++.++...-+.+.....++.- ....+....+++ +.||||+.|......+
T Consensus 2 ~gh~v~fl~~~~~~~~~-~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GWGe~L 80 (171)
T PF12000_consen 2 RGHEVVFLTERKRPPIP-PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGWGETL 80 (171)
T ss_pred CCCEEEEEecCCCCCCC-CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCcchhh
Confidence 59999999955443322 67777666653322222121111 111122223332 5789999997432222
Q ss_pred HHHHHHHhhCCCEEEEeccCCcc------cccccccc----cchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCC
Q 017114 70 GALIIAKLLCVPIVMSYHTHVPV------YIPRYTFS----WLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAA 139 (377)
Q Consensus 70 ~~~~~~~~~~~~~i~~~h~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~ 139 (377)
.+.--..+.|++..+--++.. +.+..... ...+.........+..||..++++.+.++.+-..+ .
T Consensus 81 --flkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~fP~~~---r 155 (171)
T PF12000_consen 81 --FLKDVFPDAPLIGYFEFYYRASGADVGFDPEFPPSLDDRARLRMRNAHNLLALEQADAGISPTRWQRSQFPAEF---R 155 (171)
T ss_pred --hHHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHhCCHHH---H
Confidence 222233588887654321111 11111111 11111223345566789999999999988886664 4
Q ss_pred CcEEEecCCCCCCCC
Q 017114 140 NKIRIWKKGVDSESF 154 (377)
Q Consensus 140 ~~i~~i~~gv~~~~~ 154 (377)
++|.||.-|+|++.+
T Consensus 156 ~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 156 SKISVIHDGIDTDRF 170 (171)
T ss_pred cCcEEeecccchhhc
Confidence 799999999998754
No 143
>PLN03007 UDP-glucosyltransferase family protein
Probab=98.06 E-value=0.0097 Score=55.05 Aligned_cols=133 Identities=12% Similarity=0.113 Sum_probs=79.7
Q ss_pred CCCCeEEEeecccc--cccHHHHHHHHHhCCCceEEE-EecC--------ccHHHHHHhhcCCCEEEccccCchhHHHHH
Q 017114 172 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAF-IGDG--------PYREELEKMFTGMPAVFTGMLLGEELSQAY 240 (377)
Q Consensus 172 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i-~G~g--------~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~ 240 (377)
+...+.+.+|+... .+.+..+.++++..+ ..+++ ++.. ...+.+.+.....++.+.+|+|+.+ +|
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~-~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~---iL 359 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSG-QNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVL---IL 359 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCC-CCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHH---Hh
Confidence 34567777887643 345666667777664 45444 3421 1112333334455889999998765 56
Q ss_pred hcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEe----------CCCCHHHHHHHHH
Q 017114 241 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLF----------NPGDLDDCLSKLE 306 (377)
Q Consensus 241 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~----------~~~~~~~l~~~i~ 306 (377)
..+++..+-+ .+.-++++||+++|+|+|+.... .....+. +.-..|+-+ ..-+.+++.++++
T Consensus 360 ~h~~v~~fvt--H~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~--~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~ 435 (482)
T PLN03007 360 DHQATGGFVT--HCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVT--QVLRTGVSVGAKKLVKVKGDFISREKVEKAVR 435 (482)
T ss_pred ccCccceeee--cCcchHHHHHHHcCCCeeeccchhhhhhhHHHHH--HhhcceeEeccccccccccCcccHHHHHHHHH
Confidence 6776633333 34467999999999999987542 2222220 001222222 1237889999999
Q ss_pred HHhhCH
Q 017114 307 PLLYNQ 312 (377)
Q Consensus 307 ~~~~~~ 312 (377)
+++.++
T Consensus 436 ~~m~~~ 441 (482)
T PLN03007 436 EVIVGE 441 (482)
T ss_pred HHhcCc
Confidence 999875
No 144
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.00053 Score=65.16 Aligned_cols=275 Identities=16% Similarity=0.125 Sum_probs=161.7
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHh
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 134 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 134 (377)
.-|+|++|+.+.+.++.++-.+....++-+..|..+|............ -.-..+-.+|.+-......+..+...
T Consensus 140 ~~d~vwihdyhlmllp~~lr~~~~~~~ig~flhspfpssEi~r~lp~r~-----eIl~gll~~~~i~f~t~d~arhFls~ 214 (732)
T KOG1050|consen 140 EGDIVWIHDYHLMLLPQMLRERFNSAKIGFFLHSPFPSSEIYRCLPVRK-----EILRGLLYDDLLGFHTDDYARHFLST 214 (732)
T ss_pred CCCcEEEEcchhhccchhhhcccccceEEEeccCCCChHHHHHhcccHH-----HHHHhhhccCccccccccHHHHHHHH
Confidence 6789999998777666554444456666677788766532111111111 11123334555555544444433221
Q ss_pred -------------------cccCCCcEEEecCCCCCCCCCCccCc---hHHHHHhhCCCCCCCeEEEeecccccccHHHH
Q 017114 135 -------------------RVTAANKIRIWKKGVDSESFHPRFRS---SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFL 192 (377)
Q Consensus 135 -------------------~~~~~~~i~~i~~gv~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l 192 (377)
+......+..+|-|+|...+...... ......+...-.++.+++-+-+++..||...=
T Consensus 215 c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD~~d~~kg~~~K 294 (732)
T KOG1050|consen 215 CSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVDRLDSIKGIQLK 294 (732)
T ss_pred HHHHHHhhhhccCCcceEEeccceeeeeecccccchHHhhccccchhHHHHHHHHhhhccCCceEecccccccccCchHH
Confidence 00112345567777777665433221 12222232223467778888899999887655
Q ss_pred HHHHHhC----C----CceEEEEe-----cCccHHHHHHhhc----CC----------C-EEEccccCchhHHHHHhcCC
Q 017114 193 KRVMDRL----P----EARIAFIG-----DGPYREELEKMFT----GM----------P-AVFTGMLLGEELSQAYASGD 244 (377)
Q Consensus 193 ~~a~~~l----~----~~~l~i~G-----~g~~~~~l~~~~~----~~----------~-v~~~g~~~~~~~~~~~~~ad 244 (377)
+.++.++ | ++.++.+. ++...+.++..+. .. . ..+...++..++..++.-+|
T Consensus 295 l~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vae 374 (732)
T KOG1050|consen 295 LLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAE 374 (732)
T ss_pred HHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhh
Confidence 5555443 3 34444443 2222222222221 11 1 34567788899999999999
Q ss_pred EEEeccCCcccchHHHHHHhcC----CCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHH
Q 017114 245 VFVMPSESETLGLVVLEAMSSG----IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 320 (377)
Q Consensus 245 i~v~ps~~e~~~~~~~Ea~a~G----~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 320 (377)
+.+..+..+|..++.+|+.+|. .+.|.+...|..+.. ++...++++.+.++++.+|..+++.++.-.+++.
T Consensus 375 v~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl-----~d~aivvnpw~~~~~~~~i~~al~~s~~e~~~r~ 449 (732)
T KOG1050|consen 375 VCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTL-----EDAAIVVNPWDGDEFAILISKALTMSDEERELRE 449 (732)
T ss_pred heeecccccccchhhhHHHHhhcccCCceEEeeeccccccc-----cccCEEECCcchHHHHHHHHHHhhcCHHHHhhcc
Confidence 9999999999999999999885 567777777766665 4567889999999999999999986554444433
Q ss_pred H-HHHHHHhcCHHHHHHHHH
Q 017114 321 A-ARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 321 ~-~~~~~~~~s~~~~~~~~~ 339 (377)
. ..+.+...+....++.+.
T Consensus 450 ~~~~~~v~~~~~~~W~~~~~ 469 (732)
T KOG1050|consen 450 PKHYKYVSTHDVVYWAKSFL 469 (732)
T ss_pred hhhhhhhcchhHHHHHHHHH
Confidence 2 222222344444444444
No 145
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.96 E-value=0.0044 Score=53.55 Aligned_cols=200 Identities=18% Similarity=0.172 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCCEEEeCCCchh----------H-HHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHH
Q 017114 45 PRIISEVARFKPDIIHASSPGIM----------V-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFL 113 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~----------~-~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
..+.+.++ +.|++++.+...+ . +....+++..|+|+++.-.+..|.. ....+.+.+.+
T Consensus 56 ~~~~~~l~--~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~---------~~~~r~~~~~~ 124 (298)
T TIGR03609 56 LAVLRALR--RADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLR---------RRLSRWLVRRV 124 (298)
T ss_pred HHHHHHHH--HCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcC---------CHHHHHHHHHH
Confidence 34555665 5688877542111 1 1123467778999988776654431 11234567788
Q ss_pred HhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccc---ccccHH
Q 017114 114 HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG---VEKSLD 190 (377)
Q Consensus 114 ~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~---~~k~~~ 190 (377)
++.+|.+.+=.+...+.+++.+. ++.+.+..+ ..-+...... . ...++..+++.-+-. .....+
T Consensus 125 l~~~~~i~vRD~~S~~~l~~~g~----~i~~~~D~a---~~l~~~~~~~-----~-~~~~~~~i~i~~r~~~~~~~~~~~ 191 (298)
T TIGR03609 125 LRGCRAISVRDAASYRLLKRLGI----PAELAADPV---WLLPPEPWPG-----G-EPLPEPVIVVSLRPWPLLDVSRLL 191 (298)
T ss_pred HccCCEEEEeCHHHHHHHHHhCC----CceEeCChh---hhCCCCcccc-----c-ccCCCCeEEEEECCCCcCCHHHHH
Confidence 89999999877877888776543 355555332 2211110000 0 111233344332221 122345
Q ss_pred HHHHHHHhC---CCceEEEEec--CccHHHHHHhhcCC--CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH
Q 017114 191 FLKRVMDRL---PEARIAFIGD--GPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 263 (377)
Q Consensus 191 ~l~~a~~~l---~~~~l~i~G~--g~~~~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 263 (377)
.+.+++..+ .+.+++++.. ..+.+..+++.... ...+....+.+|+..++++||++|.... -.++=|+
T Consensus 192 ~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl-----H~~I~A~ 266 (298)
T TIGR03609 192 RLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL-----HALILAA 266 (298)
T ss_pred HHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech-----HHHHHHH
Confidence 566655554 3666666552 22333333332221 1122245566899999999999885443 3567799
Q ss_pred hcCCCeEEec
Q 017114 264 SSGIPVVGVR 273 (377)
Q Consensus 264 a~G~PvI~~~ 273 (377)
.+|+|+|+-.
T Consensus 267 ~~gvP~i~i~ 276 (298)
T TIGR03609 267 AAGVPFVALS 276 (298)
T ss_pred HcCCCEEEee
Confidence 9999999653
No 146
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.91 E-value=0.001 Score=56.93 Aligned_cols=80 Identities=24% Similarity=0.252 Sum_probs=54.2
Q ss_pred HHHHHHHHhC--CCceEEEEecCccHHHHHHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH
Q 017114 190 DFLKRVMDRL--PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 263 (377)
Q Consensus 190 ~~l~~a~~~l--~~~~l~i~G~g~~~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 263 (377)
+.+.++++.+ .++++++.|...+.+..++.... ..+.+.|..+-.|+..+++.||++|.+.. ..+-=|.
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds-----g~~HlA~ 214 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS-----GPMHLAA 214 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC-----HHHHHHH
Confidence 3444444433 27899999976665555554432 23556777777899999999999997642 4455567
Q ss_pred hcCCCeEEecC
Q 017114 264 SSGIPVVGVRA 274 (377)
Q Consensus 264 a~G~PvI~~~~ 274 (377)
++|+|+|+--.
T Consensus 215 a~~~p~i~l~g 225 (279)
T cd03789 215 ALGTPTVALFG 225 (279)
T ss_pred HcCCCEEEEEC
Confidence 99999997543
No 147
>PLN03004 UDP-glycosyltransferase
Probab=97.90 E-value=0.00037 Score=63.24 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=87.7
Q ss_pred CCCCeEEEeeccc--ccccHHHHHHHHHhCCCceEEEEecCc-------------cHHHHHHhhcCCCEEEccccCchhH
Q 017114 172 PDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIGDGP-------------YREELEKMFTGMPAVFTGMLLGEEL 236 (377)
Q Consensus 172 ~~~~~i~~~G~~~--~~k~~~~l~~a~~~l~~~~l~i~G~g~-------------~~~~l~~~~~~~~v~~~g~~~~~~~ 236 (377)
+...+.+.+|+.. +.+.+..+..+++..+. .|+.+-..+ ..+.+.+..++.++.+.+|+|+.+
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~-~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~- 346 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQ-RFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVP- 346 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCC-CEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHH-
Confidence 4557777788773 34556777788887755 454443211 112333444556899999998777
Q ss_pred HHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecC----CCCCccccccC-CCCeeEEeCC-----CCHHHHHHHHH
Q 017114 237 SQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA----GGIPDIIPEDQ-DGKIGYLFNP-----GDLDDCLSKLE 306 (377)
Q Consensus 237 ~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~~~~~~~~-~~~~g~~~~~-----~~~~~l~~~i~ 306 (377)
+++.+++..+-+ .+.-++++||+++|+|+|+... ......+ . .-+.|+.++. -+.++++++++
T Consensus 347 --iL~H~~v~~FvT--H~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~---~~~~g~g~~l~~~~~~~~~~e~l~~av~ 419 (451)
T PLN03004 347 --VLNHKAVGGFVT--HCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMI---VDEIKIAISMNESETGFVSSTEVEKRVQ 419 (451)
T ss_pred --HhCCCccceEec--cCcchHHHHHHHcCCCEEeccccccchhhHHHH---HHHhCceEEecCCcCCccCHHHHHHHHH
Confidence 577788743333 3456799999999999998753 3333344 2 2356766642 37899999999
Q ss_pred HHhhCHHHH
Q 017114 307 PLLYNQELR 315 (377)
Q Consensus 307 ~~~~~~~~~ 315 (377)
+++.+++.+
T Consensus 420 ~vm~~~~~r 428 (451)
T PLN03004 420 EIIGECPVR 428 (451)
T ss_pred HHhcCHHHH
Confidence 999875433
No 148
>PLN02562 UDP-glycosyltransferase
Probab=97.87 E-value=0.00048 Score=62.78 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=85.8
Q ss_pred CCCeEEEeeccc---ccccHHHHHHHHHhCCCceEEE-EecC---ccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCE
Q 017114 173 DKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAF-IGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDV 245 (377)
Q Consensus 173 ~~~~i~~~G~~~---~~k~~~~l~~a~~~l~~~~l~i-~G~g---~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi 245 (377)
...+.+.+|+.. +.+-+..+..+++..+. ++++ +..+ ...+.+.+.. ..|+.+.+|+|+.++ ++..++
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~-~fiW~~~~~~~~~l~~~~~~~~-~~~~~v~~w~PQ~~i---L~h~~v 347 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGR-PFIWVLNPVWREGLPPGYVERV-SKQGKVVSWAPQLEV---LKHQAV 347 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCC-CEEEEEcCCchhhCCHHHHHHh-ccCEEEEecCCHHHH---hCCCcc
Confidence 346777888753 44567888888888854 5554 3221 1222222222 246777899987775 555555
Q ss_pred EEeccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCC-CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHH
Q 017114 246 FVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRET 317 (377)
Q Consensus 246 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~ 317 (377)
..+-+ .+.-++++||+.+|+|+|+.... .....+ .+ -+.|+-+...+.+++++++++++.+++.+++
T Consensus 348 ~~fvt--H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~---~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 348 GCYLT--HCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYI---VDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGER 419 (448)
T ss_pred ceEEe--cCcchhHHHHHHcCCCEEeCCcccchHHHHHHH---HHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHH
Confidence 33333 34567999999999999987543 333333 22 3456666556889999999999988665444
No 149
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.86 E-value=4.6e-05 Score=71.15 Aligned_cols=134 Identities=17% Similarity=0.245 Sum_probs=82.6
Q ss_pred CCCCeEEEeeccc---ccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEe
Q 017114 172 PDKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 248 (377)
Q Consensus 172 ~~~~~i~~~G~~~---~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ 248 (377)
++..+++.+|+.. +.+-.+.++++++.+|. +++..-++.....+ ..|+.+..|+|+.++ |+...+-++
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l-----~~n~~~~~W~PQ~~l---L~hp~v~~f 345 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENL-----PKNVLIVKWLPQNDL---LAHPRVKLF 345 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHH-----HTTEEEESS--HHHH---HTSTTEEEE
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCC-cccccccccccccc-----cceEEEeccccchhh---hhcccceee
Confidence 3455677778763 23336778899999987 77766555322222 247899999988765 555444333
Q ss_pred ccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHH
Q 017114 249 PSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMG 319 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~ 319 (377)
- ..|.-+++.||+.+|+|+|+-+.- .....+ ++.+.|...+.. +.+++.++|.++++|+.+++...
T Consensus 346 i--tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~---~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~a~ 417 (500)
T PF00201_consen 346 I--THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV---EEKGVGVVLDKNDLTEEELRAAIREVLENPSYKENAK 417 (500)
T ss_dssp E--ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH---HHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHHHH
T ss_pred e--eccccchhhhhhhccCCccCCCCcccCCccceEE---EEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHHHHH
Confidence 2 346678999999999999987642 233344 455567766533 57899999999999986554433
No 150
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.73 E-value=0.0064 Score=53.54 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=64.1
Q ss_pred CCCeEEEeec-cccccc--HHHHHHHHHhC--CCceEEEEecCccHHHHHHhhcCC--C-EEEccccCchhHHHHHhcCC
Q 017114 173 DKPLIVHVGR-LGVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM--P-AVFTGMLLGEELSQAYASGD 244 (377)
Q Consensus 173 ~~~~i~~~G~-~~~~k~--~~~l~~a~~~l--~~~~l~i~G~g~~~~~l~~~~~~~--~-v~~~g~~~~~~~~~~~~~ad 244 (377)
++.+++..|. ..+.|. .+.+.++++.+ .+.++++.|+..+.+..++..... + +.+.|..+-.|+..+++.||
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~ 253 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAK 253 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCC
Confidence 4455666665 335554 34555555444 468899999766655544443322 2 44678777799999999999
Q ss_pred EEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 245 VFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 245 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
++|... +..+-=|.|+|+|+|+-
T Consensus 254 l~I~~D-----SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 254 AVVTND-----SGLMHVAAALNRPLVAL 276 (334)
T ss_pred EEEeeC-----CHHHHHHHHcCCCEEEE
Confidence 999654 34566688999999975
No 151
>PLN02764 glycosyltransferase family protein
Probab=97.73 E-value=0.00088 Score=60.67 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=85.6
Q ss_pred CCCCCCeEEEeecccc--cccHHHHHHHHHhC-CCceEEEEe-cC------ccHHHHHHhhcCCCEEEccccCchhHHHH
Q 017114 170 GEPDKPLIVHVGRLGV--EKSLDFLKRVMDRL-PEARIAFIG-DG------PYREELEKMFTGMPAVFTGMLLGEELSQA 239 (377)
Q Consensus 170 ~~~~~~~i~~~G~~~~--~k~~~~l~~a~~~l-~~~~l~i~G-~g------~~~~~l~~~~~~~~v~~~g~~~~~~~~~~ 239 (377)
.+++..+.+.+|+... .+.+..+...++.- .++..++-- .+ ...+.+....++.++.+.+|+|+.++...
T Consensus 254 q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h 333 (453)
T PLN02764 254 YEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSH 333 (453)
T ss_pred CCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcC
Confidence 3455667778887743 23344444443332 123333321 11 11122333344557888899988875332
Q ss_pred HhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeC-----CCCHHHHHHHHHHHhh
Q 017114 240 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN-----PGDLDDCLSKLEPLLY 310 (377)
Q Consensus 240 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~-----~~~~~~l~~~i~~~~~ 310 (377)
.++.++| ..+.-++++||+.+|+|+|+....+ ....+. +.-+.|+.+. .-+.+++.++++++++
T Consensus 334 -~~v~~Fv----tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~--~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~ 406 (453)
T PLN02764 334 -PSVGCFV----SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS--DELKVSVEVAREETGWFSKESLRDAINSVMK 406 (453)
T ss_pred -cccCeEE----ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH--HHhceEEEeccccCCccCHHHHHHHHHHHhc
Confidence 2234465 3455789999999999999876432 233331 2234555542 1378999999999998
Q ss_pred CH-HHHHHHHHHHHHHH
Q 017114 311 NQ-ELRETMGQAARQEM 326 (377)
Q Consensus 311 ~~-~~~~~~~~~~~~~~ 326 (377)
++ +..+++++++++..
T Consensus 407 ~~~~~g~~~r~~a~~~~ 423 (453)
T PLN02764 407 RDSEIGNLVKKNHTKWR 423 (453)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 64 44556666665554
No 152
>PLN00164 glucosyltransferase; Provisional
Probab=97.70 E-value=0.008 Score=55.41 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=86.1
Q ss_pred CCCeEEEeeccc--ccccHHHHHHHHHhCCCceEEE-EecCc---------------cHHHHHHhhcCCCEEEccccCch
Q 017114 173 DKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAF-IGDGP---------------YREELEKMFTGMPAVFTGMLLGE 234 (377)
Q Consensus 173 ~~~~i~~~G~~~--~~k~~~~l~~a~~~l~~~~l~i-~G~g~---------------~~~~l~~~~~~~~v~~~g~~~~~ 234 (377)
...+.+.+|+.. ..+.+..+..+++..+ ..++. +.... ..+.+.+..++.++.+.+|+|+.
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~-~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~ 350 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSG-HRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQK 350 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcC-CCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHH
Confidence 445667778752 2234777777777763 35543 33211 11222333344568888999876
Q ss_pred hHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeCC-------CCHHHHHH
Q 017114 235 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP-------GDLDDCLS 303 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~~-------~~~~~l~~ 303 (377)
++ |+..++..+-+ .+.-++++||+.+|+|+|+...- .....+. +.-+.|+.+.. -+.+++++
T Consensus 351 ~i---L~h~~vg~fvt--H~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~--~~~gvG~~~~~~~~~~~~~~~e~l~~ 423 (480)
T PLN00164 351 EI---LAHAAVGGFVT--HCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELV--ADMGVAVAMKVDRKRDNFVEAAELER 423 (480)
T ss_pred HH---hcCcccCeEEe--ecccchHHHHHHcCCCEEeCCccccchhHHHHHH--HHhCeEEEeccccccCCcCcHHHHHH
Confidence 64 66666533333 34457899999999999987532 2332220 23456665531 25789999
Q ss_pred HHHHHhhCHH-HHHHHHHHHHHHH
Q 017114 304 KLEPLLYNQE-LRETMGQAARQEM 326 (377)
Q Consensus 304 ~i~~~~~~~~-~~~~~~~~~~~~~ 326 (377)
+|++++.+++ ..+.+++++++..
T Consensus 424 av~~vm~~~~~~~~~~r~~a~~~~ 447 (480)
T PLN00164 424 AVRSLMGGGEEEGRKAREKAAEMK 447 (480)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHH
Confidence 9999997643 2455555555443
No 153
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.70 E-value=0.007 Score=55.93 Aligned_cols=134 Identities=11% Similarity=0.086 Sum_probs=79.8
Q ss_pred CCCeEEEeecccc--cccHHHHHHHHHhCCCceEEEEecCc-------------c-----HHHHHHhhcCCCEEEccccC
Q 017114 173 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGP-------------Y-----REELEKMFTGMPAVFTGMLL 232 (377)
Q Consensus 173 ~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i~G~g~-------------~-----~~~l~~~~~~~~v~~~g~~~ 232 (377)
...+.+.+|+... .+.+..+..+++..+. +++++-.++ . .+.+.+.. ..++.+.+|+|
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~-~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~-~~~g~v~~W~P 351 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGH-RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT-KDIGKVIGWAP 351 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCC-CeEEEEcCCcccccccccccccchhhhCChHHHHHh-ccCceEEeeCC
Confidence 3456777887632 4467788888887753 555443210 0 11122222 23566679998
Q ss_pred chhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC----CCC-ccccccCCCCeeEEeC-------------
Q 017114 233 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIP-DIIPEDQDGKIGYLFN------------- 294 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~-~~~~~~~~~~~g~~~~------------- 294 (377)
+.++... ..+.++| ..+.-++++||+.+|+|+|+.... ... ..+ +.-+.|..+.
T Consensus 352 Q~~iL~H-~~v~~Fv----tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v---~~~g~Gv~l~~~~~~~~~~~~~~ 423 (481)
T PLN02554 352 QVAVLAK-PAIGGFV----THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMV---EELGLAVEIRKYWRGDLLAGEME 423 (481)
T ss_pred HHHHhCC-cccCccc----ccCccchHHHHHHcCCCEEecCccccchhhHHHHH---HHhCceEEeeccccccccccccC
Confidence 7765321 3444455 345567999999999999987543 222 223 3344565542
Q ss_pred CCCHHHHHHHHHHHhh-CHHHHH
Q 017114 295 PGDLDDCLSKLEPLLY-NQELRE 316 (377)
Q Consensus 295 ~~~~~~l~~~i~~~~~-~~~~~~ 316 (377)
.-+.+++.++|++++. +++.++
T Consensus 424 ~~~~e~l~~av~~vm~~~~~~r~ 446 (481)
T PLN02554 424 TVTAEEIERGIRCLMEQDSDVRK 446 (481)
T ss_pred eEcHHHHHHHHHHHhcCCHHHHH
Confidence 1267899999999996 544433
No 154
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=97.69 E-value=0.00029 Score=55.11 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=62.8
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHH-HHHHHHHh-h-CCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcC
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVF-GALIIAKL-L-CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAA 117 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~-~~~~~~~~-~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (377)
.....++.+.+++.+||+|++.++..... ...+..+. . ++|++..+.|..... + -|+...+
T Consensus 75 ~~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H-~---------------~W~~~~~ 138 (169)
T PF06925_consen 75 RLFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVH-P---------------FWIHPGV 138 (169)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCC-c---------------CeecCCC
Confidence 34446788999999999999999865544 33222333 3 578776666642211 0 1345689
Q ss_pred CeeEecChhHHHHHHHhcccCCCcEEEecCC
Q 017114 118 DLTLVPSVAIGKDLEAARVTAANKIRIWKKG 148 (377)
Q Consensus 118 d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g 148 (377)
|..++.|++.++.+.+.| +++++|.+...+
T Consensus 139 D~y~Vase~~~~~l~~~G-i~~~~I~vtGiP 168 (169)
T PF06925_consen 139 DRYFVASEEVKEELIERG-IPPERIHVTGIP 168 (169)
T ss_pred CEEEECCHHHHHHHHHcC-CChhHEEEeCcc
Confidence 999999999999999976 478888876543
No 155
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.0062 Score=53.52 Aligned_cols=96 Identities=20% Similarity=0.321 Sum_probs=67.2
Q ss_pred CCCeEEEee-ccccccc--HHHHHHHHHhC--CCceEEEEecCccHHHHHHhhcCCC--EEEccccCchhHHHHHhcCCE
Q 017114 173 DKPLIVHVG-RLGVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDV 245 (377)
Q Consensus 173 ~~~~i~~~G-~~~~~k~--~~~l~~a~~~l--~~~~l~i~G~g~~~~~l~~~~~~~~--v~~~g~~~~~~~~~~~~~adi 245 (377)
.+.+++..| +....|. .+.+.+.++.+ ...+++++|+..+.+..+++..... +.+.|..+-.|+..+++.||+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 356667777 5546665 34455555444 2478999997766666666655443 227888888999999999999
Q ss_pred EEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 246 FVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 246 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
+|.+. +..+-=|.|.|+|+|+--
T Consensus 255 ~I~~D-----Sg~~HlAaA~~~P~I~iy 277 (334)
T COG0859 255 VIGND-----SGPMHLAAALGTPTIALY 277 (334)
T ss_pred EEccC-----ChHHHHHHHcCCCEEEEE
Confidence 99665 345566899999999763
No 156
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.63 E-value=0.0048 Score=56.72 Aligned_cols=128 Identities=14% Similarity=0.157 Sum_probs=78.1
Q ss_pred CCCeEEEeecccc--cccHHHHHHHHHhCCCceEEEE-ecCc--------cHHHHHHhhcCCCEEEccccCchhHHHHHh
Q 017114 173 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDGP--------YREELEKMFTGMPAVFTGMLLGEELSQAYA 241 (377)
Q Consensus 173 ~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i~-G~g~--------~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~ 241 (377)
...+.+.+|+... ...+..+..+++..+ ..++++ +... ..+.+.+.....++.+.+|+|+.++ +.
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~-~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~v---L~ 358 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSG-VHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAI---LS 358 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCC-CcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHH---hc
Confidence 4556777887642 234677777777764 355444 3211 1122333334557888899987664 55
Q ss_pred c--CCEEEeccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeC-----CCCHHHHHHHHHHHhh
Q 017114 242 S--GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFN-----PGDLDDCLSKLEPLLY 310 (377)
Q Consensus 242 ~--adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~-----~~~~~~l~~~i~~~~~ 310 (377)
. .+++| ..+.-++++||+++|+|+|+.... .....+. +.-+.|..+. .-+.+++.+++.+++.
T Consensus 359 h~~v~~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~--~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 359 HRAVGAFL----THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLV--DELKVAVRVCEGADTVPDSDELARVFMESVS 432 (477)
T ss_pred CCCcCeEE----ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHH--HhhceeEEeccCCCCCcCHHHHHHHHHHHhh
Confidence 4 45565 345567999999999999986542 3333320 2235666552 1267899999998874
No 157
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.61 E-value=0.0059 Score=53.99 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=62.3
Q ss_pred CCCeEEEeeccccccc--HHHHHHHHHhC--CCceEEEEecCc--cHHHHHHhh---cCCC-EEEccccCchhHHHHHhc
Q 017114 173 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGP--YREELEKMF---TGMP-AVFTGMLLGEELSQAYAS 242 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~--~~~l~~a~~~l--~~~~l~i~G~g~--~~~~l~~~~---~~~~-v~~~g~~~~~~~~~~~~~ 242 (377)
++.+++..|.-.+.|. .+.+.+.++.+ .+.+++++|+.. +.+..++.. ...+ +.+.|..+-.|+..+++.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 4456667776545554 34444544444 468899998543 222233322 2222 457888888999999999
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
||++|... +..+-=|.|+|+|+|+--
T Consensus 261 a~l~Vs~D-----SGp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 261 ARLFIGVD-----SVPMHMAAALGTPLVALF 286 (344)
T ss_pred CCEEEecC-----CHHHHHHHHcCCCEEEEE
Confidence 99999664 345666899999999753
No 158
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.017 Score=47.04 Aligned_cols=188 Identities=16% Similarity=0.122 Sum_probs=103.8
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHH
Q 017114 54 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEA 133 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 133 (377)
..||+++..+-....+ ++.+.+..+.+.++.+.+.-. -++..|.++++-.+..+....
T Consensus 69 ~~Pdl~I~aGrrta~l-~~~lkk~~~~~~vVqI~~Prl---------------------p~~~fDlvivp~HD~~~~~s~ 126 (329)
T COG3660 69 QRPDLIITAGRRTAPL-AFYLKKKFGGIKVVQIQDPRL---------------------PYNHFDLVIVPYHDWREELSD 126 (329)
T ss_pred CCCceEEecccchhHH-HHHHHHhcCCceEEEeeCCCC---------------------CcccceEEeccchhhhhhhhc
Confidence 4699999887544333 444556666566666665321 124688898887776665332
Q ss_pred hcccCCCcEEEecCCCCCCCCCCcc--CchHHHHHhhCCCCCCCeEEEeecccccccH--H---HHHHHH-HhC--CCce
Q 017114 134 ARVTAANKIRIWKKGVDSESFHPRF--RSSEMRWRLSNGEPDKPLIVHVGRLGVEKSL--D---FLKRVM-DRL--PEAR 203 (377)
Q Consensus 134 ~~~~~~~~i~~i~~gv~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~--~---~l~~a~-~~l--~~~~ 203 (377)
.+ .++..+. |..-. ..+.. ...+..+.+. .....++-+++|.-.+.-.. + .+..++ +.+ .+..
T Consensus 127 ~~----~Nilpi~-Gs~h~-Vt~~~lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~ 199 (329)
T COG3660 127 QG----PNILPIN-GSPHN-VTSQRLAALREAFKHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGS 199 (329)
T ss_pred cC----Cceeecc-CCCCc-ccHHHhhhhHHHHHhhC-CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCce
Confidence 22 3443332 33211 11110 1112222222 34567788888866543332 2 222222 223 3577
Q ss_pred EEEEecCccHHHHHHhhcCC-----CEEEccc-cCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 204 IAFIGDGPYREELEKMFTGM-----PAVFTGM-LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 204 l~i~G~g~~~~~l~~~~~~~-----~v~~~g~-~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
+++.-+....+.++..++.. .+.+-+. ....-...+|+.||.++....+ =+-+.||.+.|+||-+..
T Consensus 200 ~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDS---inM~sEAasTgkPv~~~~ 272 (329)
T COG3660 200 FLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADS---INMCSEAASTGKPVFILE 272 (329)
T ss_pred EEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecch---hhhhHHHhccCCCeEEEe
Confidence 77777666666666665542 2333322 1224577899999999976532 234789999999998653
No 159
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=97.59 E-value=0.019 Score=47.19 Aligned_cols=283 Identities=16% Similarity=0.119 Sum_probs=127.7
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHh-cCCCEEEeCCCchhHH----H---HH
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVAR-FKPDIIHASSPGIMVF----G---AL 72 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~pDii~~~~~~~~~~----~---~~ 72 (377)
.||+++++......-..... +.... +.+.......+.+.+++ ..+|++.+.+.+.... . -.
T Consensus 17 Ng~~~~i~~a~e~sftR~ds---H~~~~--------~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vqE~~iNnY~k 85 (355)
T PF11440_consen 17 NGVEFTIVSADEKSFTRPDS---HDSKS--------FSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQEAIINNYEK 85 (355)
T ss_dssp TT-EEEEEEETSS--TTTTS---SS-TT--------TEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-HHHHHHHHH
T ss_pred cCCeeEEEEecccccCCccc---cccce--------eeeehhhHHHHHHHHHHhhccCEEEEecccCchHHHHHHHHHHH
Confidence 48999999887643221111 11111 11111112334444443 3899999876432211 1 11
Q ss_pred HHHHhh-CCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHH--H-HHHHhccc---CCCcEEEe
Q 017114 73 IIAKLL-CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIG--K-DLEAARVT---AANKIRIW 145 (377)
Q Consensus 73 ~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~--~-~~~~~~~~---~~~~i~~i 145 (377)
++.+.. .+++|...|++......... ...-+.+.+|.|++.|...- . .....++. ..+++...
T Consensus 86 ii~~Ik~~ik~V~~~Hdh~~lsI~rn~----------~le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~ 155 (355)
T PF11440_consen 86 IIKKIKPSIKVVGFMHDHNKLSIDRNP----------YLEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKF 155 (355)
T ss_dssp HHHCS-TTSEEEEEE---SHHHHTTBS----------SHHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-----
T ss_pred HHHhccccceeEEEeeccceeeccccc----------cHHHHHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhc
Confidence 122222 34578889997533222111 12346688999999876432 1 12233321 12344444
Q ss_pred cCCCCCCCCCCccCchHHHHHhhCCCCCCCeE---EEeecccccccHHHHHHHHHhC---CCceEEEEecCccHHHH--H
Q 017114 146 KKGVDSESFHPRFRSSEMRWRLSNGEPDKPLI---VHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREEL--E 217 (377)
Q Consensus 146 ~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~G~~~~~k~~~~l~~a~~~l---~~~~l~i~G~g~~~~~l--~ 217 (377)
|...+ |.+..+-...+..+. .....+.. +|+|+....||...+++.-+.. ++..-++-|-......+ .
T Consensus 156 p~v~n---fqpp~~i~~~Rstyw-kd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK~~~~~t~~~GierS~A~~~i~ 231 (355)
T PF11440_consen 156 PMVFN---FQPPMDINKYRSTYW-KDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILKPAGFKTIMEGIERSPAKISIK 231 (355)
T ss_dssp --EEE-------B-HHHHHHHH----GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTTTTT-EEEEE---SSTHHHHHH
T ss_pred ceeee---cCCcccHHHHHHHHh-hhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcCCcchhHHhhhhhcCCceeeee
Confidence 43322 233322233343332 22234444 7999999999999999877665 56777888832211111 1
Q ss_pred Hh-----------------hcCCCEEEccccCchhHHHHHhcCCEEEeccC------CcccchHHHHHHhcCCC-eEEec
Q 017114 218 KM-----------------FTGMPAVFTGMLLGEELSQAYASGDVFVMPSE------SETLGLVVLEAMSSGIP-VVGVR 273 (377)
Q Consensus 218 ~~-----------------~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~------~e~~~~~~~Ea~a~G~P-vI~~~ 273 (377)
+. .....+.+.|..-++|..+.|+.+-++..-+. .+.+-.+-+|..|||.- |.-..
T Consensus 232 d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~ 311 (355)
T PF11440_consen 232 DHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKS 311 (355)
T ss_dssp HTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHH
T ss_pred cCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeecc
Confidence 11 00112677777778899999999888866543 23466789999999975 44332
Q ss_pred CC-------CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 274 AG-------GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 274 ~~-------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.| ....++ ......+.++..|.++-.+.|.++.++
T Consensus 312 ~GEN~r~~~D~~~~~---~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 312 WGENNRFTLDGTRYI---DHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp HHHHSB-TTTSSBGG---SS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred ccccceeeecCceee---ccCcceeEeccchHHHHHHHHHHHhcc
Confidence 22 122333 334455677778888888888777654
No 160
>PLN00414 glycosyltransferase family protein
Probab=97.59 E-value=0.0016 Score=59.20 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=89.1
Q ss_pred hhCCCCCCCeEEEeecccccc--cHHHHHHHHHhCCCceE--EEE---ecC----ccHHHHHHhhcCCCEEEccccCchh
Q 017114 167 LSNGEPDKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARI--AFI---GDG----PYREELEKMFTGMPAVFTGMLLGEE 235 (377)
Q Consensus 167 ~~~~~~~~~~i~~~G~~~~~k--~~~~l~~a~~~l~~~~l--~i~---G~g----~~~~~l~~~~~~~~v~~~g~~~~~~ 235 (377)
+...+++..+.+.+|+..... .+..+...++. .+..| ++. |.+ ...+.+.+..++.+..+.+|+|+.+
T Consensus 246 LD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~-s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~ 324 (446)
T PLN00414 246 LNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMEL-TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPL 324 (446)
T ss_pred HhcCCCCceEEEeecccccCCHHHHHHHHHHHHH-cCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHH
Confidence 333344556677788775432 23333333332 34443 332 111 1223445555556788889998877
Q ss_pred HHHHHhcC--CEEEeccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeCC-----CCHHHHHHH
Q 017114 236 LSQAYASG--DVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP-----GDLDDCLSK 304 (377)
Q Consensus 236 ~~~~~~~a--di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~~-----~~~~~l~~~ 304 (377)
+ ++.+ +++| ..+.-++++||+++|+|+|+.... .....+. +..+.|+.+.. -+.+++.++
T Consensus 325 v---L~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~--~~~g~g~~~~~~~~~~~~~~~i~~~ 395 (446)
T PLN00414 325 I---LSHPSVGCFV----NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLT--EELEVSVKVQREDSGWFSKESLRDT 395 (446)
T ss_pred H---hcCCccceEE----ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHH--HHhCeEEEeccccCCccCHHHHHHH
Confidence 5 5555 4465 345568999999999999987542 2333331 23456666632 378999999
Q ss_pred HHHHhhCH-HHHHHHHHHHHHHHH
Q 017114 305 LEPLLYNQ-ELRETMGQAARQEME 327 (377)
Q Consensus 305 i~~~~~~~-~~~~~~~~~~~~~~~ 327 (377)
+++++.++ +..+++++++++..+
T Consensus 396 v~~~m~~~~e~g~~~r~~a~~~~~ 419 (446)
T PLN00414 396 VKSVMDKDSEIGNLVKRNHKKLKE 419 (446)
T ss_pred HHHHhcCChhhHHHHHHHHHHHHH
Confidence 99999764 445666666666543
No 161
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.57 E-value=0.002 Score=58.69 Aligned_cols=142 Identities=17% Similarity=0.189 Sum_probs=83.8
Q ss_pred CCCCCeEEEeecccc--cccHHHHHHHHHhCCCceEEEEec-C----c-----cHHHHHHhhcCCCEEEccccCchhHHH
Q 017114 171 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGD-G----P-----YREELEKMFTGMPAVFTGMLLGEELSQ 238 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i~G~-g----~-----~~~~l~~~~~~~~v~~~g~~~~~~~~~ 238 (377)
+++..+.+.+|+... .+.+..+..+++..+. .|+.+-+ + . ..+.+.+... .+..+.+|+|+.++
T Consensus 262 ~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~-~FlWv~r~~~~~~~~~~~~lp~~f~er~~-~~g~v~~w~PQ~~i-- 337 (451)
T PLN02410 262 KKNSVIFVSLGSLALMEINEVMETASGLDSSNQ-QFLWVIRPGSVRGSEWIESLPKEFSKIIS-GRGYIVKWAPQKEV-- 337 (451)
T ss_pred CCCcEEEEEccccccCCHHHHHHHHHHHHhcCC-CeEEEEccCcccccchhhcCChhHHHhcc-CCeEEEccCCHHHH--
Confidence 345567777887642 3445666667766644 4444321 1 1 1223333332 35666799988775
Q ss_pred HHhcCCE--EEeccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCC-CeeEEe-CCCCHHHHHHHHHHHhh
Q 017114 239 AYASGDV--FVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDG-KIGYLF-NPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 239 ~~~~adi--~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~-~~g~~~-~~~~~~~l~~~i~~~~~ 310 (377)
++..++ +| ..+.-++++||+++|+|+|+....+ ....+ .+. +.|+.+ ..-+.+++++++++++.
T Consensus 338 -L~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~---~~~~~~G~~~~~~~~~~~v~~av~~lm~ 409 (451)
T PLN02410 338 -LSHPAVGGFW----SHCGWNSTLESIGEGVPMICKPFSSDQKVNARYL---ECVWKIGIQVEGDLDRGAVERAVKRLMV 409 (451)
T ss_pred -hCCCccCeee----ecCchhHHHHHHHcCCCEEeccccccCHHHHHHH---HHHhCeeEEeCCcccHHHHHHHHHHHHc
Confidence 555444 55 3345679999999999999875432 22333 222 466555 33477899999999998
Q ss_pred CHHHHHHHHHHHHHH
Q 017114 311 NQELRETMGQAARQE 325 (377)
Q Consensus 311 ~~~~~~~~~~~~~~~ 325 (377)
+++ -+++++++++.
T Consensus 410 ~~~-~~~~r~~a~~l 423 (451)
T PLN02410 410 EEE-GEEMRKRAISL 423 (451)
T ss_pred CCc-HHHHHHHHHHH
Confidence 754 33444444443
No 162
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.54 E-value=0.0069 Score=55.53 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=83.1
Q ss_pred CCCCeEEEeecccc--cccHHHHHHHHHhCCCceEEEEec----C---------------c-----cHHHHHHhhcCCCE
Q 017114 172 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGD----G---------------P-----YREELEKMFTGMPA 225 (377)
Q Consensus 172 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i~G~----g---------------~-----~~~~l~~~~~~~~v 225 (377)
++..+.+.+|+... .+.+..+..+++..+. .|+.+=. + . ..+.+.+..++.++
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~-~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~ 340 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQ-RFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGF 340 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCC-CEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCE
Confidence 45577777887643 4457778888888865 3333221 0 0 11223333445578
Q ss_pred EEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeCC----CC
Q 017114 226 VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP----GD 297 (377)
Q Consensus 226 ~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~~----~~ 297 (377)
.+.+|+|+.++ ++...+..+- ..+.-++++||+.+|+|+|+.... .....+. +..+.|..++. -+
T Consensus 341 vv~~W~PQ~~i---L~h~~vg~Fi--tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~--~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 341 VVPSWAPQAEI---LAHQAVGGFL--THCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLS--DELGIAVRSDDPKEVIS 413 (481)
T ss_pred EEeecCCHHHH---hCCcccCeeE--ecCchhHHHHHHHcCCCEEecCccchhHHHHHHHH--HHhCeeEEecCCCCccc
Confidence 99999987775 5556653322 345567999999999999987543 2233330 13445665532 37
Q ss_pred HHHHHHHHHHHhhCH
Q 017114 298 LDDCLSKLEPLLYNQ 312 (377)
Q Consensus 298 ~~~l~~~i~~~~~~~ 312 (377)
.+++++++.+++.++
T Consensus 414 ~~~l~~av~~vm~~~ 428 (481)
T PLN02992 414 RSKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHHHhcCC
Confidence 789999999999763
No 163
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.53 E-value=0.013 Score=51.93 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=64.3
Q ss_pred CCCCeEEEeecc-ccccc--HHHHHHHHHhC--CCceEEEEecCccHHHHHHhhcCC------C-EEEccccCchhHHHH
Q 017114 172 PDKPLIVHVGRL-GVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM------P-AVFTGMLLGEELSQA 239 (377)
Q Consensus 172 ~~~~~i~~~G~~-~~~k~--~~~l~~a~~~l--~~~~l~i~G~g~~~~~l~~~~~~~------~-v~~~g~~~~~~~~~~ 239 (377)
.++.+++..|.- .+.|. .+.+.++++.+ .++++++.|+..+.+..++..... + +.+.|..+-.++..+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 344566677653 35554 34455555444 468899999766555544443221 1 456787777899999
Q ss_pred HhcCCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 240 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 240 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
++.||++|..- +..+-=|.|.|+|+|+--
T Consensus 259 i~~a~l~I~nD-----TGp~HlAaA~g~P~valf 287 (348)
T PRK10916 259 IAACKAIVTND-----SGLMHVAAALNRPLVALY 287 (348)
T ss_pred HHhCCEEEecC-----ChHHHHHHHhCCCEEEEE
Confidence 99999999654 345666899999999753
No 164
>PLN02210 UDP-glucosyl transferase
Probab=97.50 E-value=0.0041 Score=56.91 Aligned_cols=132 Identities=12% Similarity=0.123 Sum_probs=79.9
Q ss_pred CCCeEEEeecccc--cccHHHHHHHHHhCCCceEEE-EecC---ccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEE
Q 017114 173 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAF-IGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVF 246 (377)
Q Consensus 173 ~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i-~G~g---~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~ 246 (377)
...+.+.+|+... ..-+..+..+++.. +.++++ ++.. ...+.+.+.....+..+.+|+|+.+ +|+.+++.
T Consensus 269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~-~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~---iL~h~~vg 344 (456)
T PLN02210 269 SSVVYISFGSMLESLENQVETIAKALKNR-GVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEK---ILSHMAIS 344 (456)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHH---HhcCcCcC
Confidence 4567777887643 33466677777766 445554 3321 1223334333223344679998766 56777633
Q ss_pred EeccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCC-CCeeEEeC------CCCHHHHHHHHHHHhhCHH
Q 017114 247 VMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQD-GKIGYLFN------PGDLDDCLSKLEPLLYNQE 313 (377)
Q Consensus 247 v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~-~~~g~~~~------~~~~~~l~~~i~~~~~~~~ 313 (377)
.+-+ .+.-++++|++.+|+|+|+-...+ ....+ .+ -+.|+.+. .-+.+++++++++++.+++
T Consensus 345 ~Fit--H~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~---~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 345 CFVT--HCGWNSTIETVVAGVPVVAYPSWTDQPIDARLL---VDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred eEEe--eCCcccHHHHHHcCCCEEecccccccHHHHHHH---HHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 3322 344568999999999999875432 23333 23 45676653 2377899999999997643
No 165
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.49 E-value=0.002 Score=58.55 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=82.1
Q ss_pred CCCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCc----cHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEE
Q 017114 172 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGP----YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 247 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~----~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v 247 (377)
++..+.+.+|+.... ..+.+.+++..+.+..++++=..+ ..+.+.+.....++.+.+|+|+.+ +|+..++..
T Consensus 263 ~~svvyvsfGS~~~~-~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~---iL~H~~v~~ 338 (449)
T PLN02173 263 QGSVVYIAFGSMAKL-SSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQ---VLSNKAIGC 338 (449)
T ss_pred CCceEEEEecccccC-CHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHH---HhCCCccce
Confidence 344677778876432 223333433334443444332211 112233333345788889998766 566666444
Q ss_pred eccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCC-CeeEEeCC------CCHHHHHHHHHHHhhCHHHHH
Q 017114 248 MPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDG-KIGYLFNP------GDLDDCLSKLEPLLYNQELRE 316 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~-~~g~~~~~------~~~~~l~~~i~~~~~~~~~~~ 316 (377)
+-+ .+..++++||+++|+|+|+...- .....+ .+. +.|+-+.. -+.+++.+++++++.+++ .+
T Consensus 339 Fvt--HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v---~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~-~~ 412 (449)
T PLN02173 339 FMT--HCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYI---QDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK-SK 412 (449)
T ss_pred EEe--cCccchHHHHHHcCCCEEecCchhcchHHHHHH---HHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh-HH
Confidence 333 35568999999999999987533 233344 222 45554421 167999999999997643 34
Q ss_pred HHHHHHHHH
Q 017114 317 TMGQAARQE 325 (377)
Q Consensus 317 ~~~~~~~~~ 325 (377)
++++++++.
T Consensus 413 ~~r~~a~~~ 421 (449)
T PLN02173 413 EMKENAGKW 421 (449)
T ss_pred HHHHHHHHH
Confidence 555555444
No 166
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.47 E-value=0.018 Score=49.61 Aligned_cols=189 Identities=16% Similarity=0.118 Sum_probs=102.5
Q ss_pred HHhcCCCEEEeCCCchhHHHHHHHHHhhCC--CEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHH
Q 017114 51 VARFKPDIIHASSPGIMVFGALIIAKLLCV--PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIG 128 (377)
Q Consensus 51 i~~~~pDii~~~~~~~~~~~~~~~~~~~~~--~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 128 (377)
+..-.||+|+..+.... ...+.+.+..|. +.|...+-.. ..+..|.++++.++
T Consensus 53 ~~~~~pdLiIsaGr~t~-~~~~~l~r~~gg~~~~V~i~~P~~----------------------~~~~FDlvi~p~HD-- 107 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTA-PAALALRRASGGRTKTVQIMDPRL----------------------PPRPFDLVIVPEHD-- 107 (311)
T ss_pred ccCCCCcEEEECCCchH-HHHHHHHHHcCCCceEEEEcCCCC----------------------CccccCEEEECccc--
Confidence 34457999999886544 334446666665 5554433211 13578999998876
Q ss_pred HHHHHhcccCCCcEEEecCCCCCCCCCCccCch---HHHHHhhCCCCCCCeEEEeecccccc--cHH---HHHHHHHhC-
Q 017114 129 KDLEAARVTAANKIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPLIVHVGRLGVEK--SLD---FLKRVMDRL- 199 (377)
Q Consensus 129 ~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~G~~~~~k--~~~---~l~~a~~~l- 199 (377)
......++...... +....+..... ....++. ..+.+.+.+.+|.-+... +.+ .+++.+..+
T Consensus 108 ------~~~~~~Nvl~t~ga--~~~i~~~~l~~a~~~~~~~~~-~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~ 178 (311)
T PF06258_consen 108 ------RLPRGPNVLPTLGA--PNRITPERLAEAAAAWAPRLA-ALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALA 178 (311)
T ss_pred ------CcCCCCceEecccC--CCcCCHHHHHHHHHhhhhhhc-cCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHH
Confidence 11122344332211 12222221111 1111222 123455666777543222 222 333333322
Q ss_pred --CCceEEEEecCccH----HHHHHhhcC-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 200 --PEARIAFIGDGPYR----EELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 200 --~~~~l~i~G~g~~~----~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.+..+.|..+.... +.+++..+. ..+.+...-+..-+..+|+.||.++++.. .-+-+.||++.|+||.+.
T Consensus 179 ~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D---SvSMvsEA~~tG~pV~v~ 255 (311)
T PF06258_consen 179 AAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTED---SVSMVSEAAATGKPVYVL 255 (311)
T ss_pred HhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCc---cHHHHHHHHHcCCCEEEe
Confidence 34788888865433 344444432 24644455555668899999999998754 134588999999999987
Q ss_pred cCCC
Q 017114 273 RAGG 276 (377)
Q Consensus 273 ~~~~ 276 (377)
..++
T Consensus 256 ~l~~ 259 (311)
T PF06258_consen 256 PLPG 259 (311)
T ss_pred cCCC
Confidence 6655
No 167
>PLN02207 UDP-glycosyltransferase
Probab=97.40 E-value=0.032 Score=51.13 Aligned_cols=187 Identities=12% Similarity=0.030 Sum_probs=98.0
Q ss_pred HhcCCeeEecChhHHHH-HHHhccc--CCCcEEEecCCCCCCCCCCcc-----CchHHHHHhhCCCCCCCeEEEeeccc-
Q 017114 114 HRAADLTLVPSVAIGKD-LEAARVT--AANKIRIWKKGVDSESFHPRF-----RSSEMRWRLSNGEPDKPLIVHVGRLG- 184 (377)
Q Consensus 114 ~~~~d~ii~~s~~~~~~-~~~~~~~--~~~~i~~i~~gv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~~~- 184 (377)
.+.+|.+++.|....+. +.+.... ...++..|..-.... -.+.. ...+...-+...++...+.+.+|+..
T Consensus 209 ~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~-~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~ 287 (468)
T PLN02207 209 FTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLK-AQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGR 287 (468)
T ss_pred cccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccc-cCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcC
Confidence 46789999988777664 2222210 012344333221111 00110 11222222322233456677788663
Q ss_pred -ccccHHHHHHHHHhCCCceEEEE-ecCcc--H----HHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccc
Q 017114 185 -VEKSLDFLKRVMDRLPEARIAFI-GDGPY--R----EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 256 (377)
Q Consensus 185 -~~k~~~~l~~a~~~l~~~~l~i~-G~g~~--~----~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~ 256 (377)
..+.+..+..+++..+. .++++ .+... . +.+.+... .+..+.+|+|+.++ ++...+..+- ..+.-
T Consensus 288 ~~~~q~~ela~~l~~~~~-~flW~~r~~~~~~~~~lp~~f~er~~-~~g~i~~W~PQ~~I---L~H~~vg~Fv--TH~Gw 360 (468)
T PLN02207 288 LRGPLVKEIAHGLELCQY-RFLWSLRTEEVTNDDLLPEGFLDRVS-GRGMICGWSPQVEI---LAHKAVGGFV--SHCGW 360 (468)
T ss_pred CCHHHHHHHHHHHHHCCC-cEEEEEeCCCccccccCCHHHHhhcC-CCeEEEEeCCHHHH---hcccccceee--ecCcc
Confidence 23457778888888754 45443 32111 1 22222222 35566799988776 4444442222 23445
Q ss_pred hHHHHHHhcCCCeEEecCC----CCCccccccCCCCeeEEeC---------CCCHHHHHHHHHHHhh
Q 017114 257 LVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFN---------PGDLDDCLSKLEPLLY 310 (377)
Q Consensus 257 ~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~---------~~~~~~l~~~i~~~~~ 310 (377)
++++||+.+|+|+|+.... ....++. +..+.|+-+. .-+.+++.++|++++.
T Consensus 361 nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~--~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 361 NSIVESLWFGVPIVTWPMYAEQQLNAFLMV--KELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ccHHHHHHcCCCEEecCccccchhhHHHHH--HHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 6899999999999987543 2333220 2234554221 1267899999999996
No 168
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.32 E-value=0.00049 Score=57.39 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=53.3
Q ss_pred HHHHHHHHh--cCCCEEEeCCCchhHHHHHHHHHhh-------CCCEEEEeccCCcccc-ccc-----ccccch------
Q 017114 45 PRIISEVAR--FKPDIIHASSPGIMVFGALIIAKLL-------CVPIVMSYHTHVPVYI-PRY-----TFSWLV------ 103 (377)
Q Consensus 45 ~~~~~~i~~--~~pDii~~~~~~~~~~~~~~~~~~~-------~~~~i~~~h~~~~~~~-~~~-----~~~~~~------ 103 (377)
..+.+.+++ .+|||||+|++.....+.+ ++... ++|+++++|+...+.. +.. ......
T Consensus 121 ~a~le~~~~l~~~pDIIH~hDW~tal~p~~-lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~ 199 (245)
T PF08323_consen 121 RAALELLKKLGWKPDIIHCHDWHTALAPLY-LKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDE 199 (245)
T ss_dssp HHHHHHHCTCT-S-SEEEEECGGGTTHHHH-HHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTT
T ss_pred HHHHHHHHhhCCCCCEEEecCchHHHHHHH-hccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccc
Confidence 345666666 5999999999876655544 33333 5999999998432211 100 000000
Q ss_pred ---hhHHHHHHHHHhcCCeeEecChhHHHHHHHh
Q 017114 104 ---KPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 134 (377)
Q Consensus 104 ---~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 134 (377)
...-.+.+..+..||.|.++|+..++.+.+.
T Consensus 200 ~~~~~~in~lk~gi~~AD~v~TVS~~Ya~Ei~~~ 233 (245)
T PF08323_consen 200 YEFYGQINFLKAGIVYADKVTTVSPTYAREIQTP 233 (245)
T ss_dssp TEETTEEEHHHHHHHHSSEEEESSHHHHHHTTSH
T ss_pred cccccccCHHHHHHHhcCEeeeCCHHHHHHHhCc
Confidence 0011356688899999999999998887654
No 169
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=97.31 E-value=0.014 Score=48.85 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=61.6
Q ss_pred CCCCeEEEeeccccccc--HHHHHHHHHhCC--CceEEEEecCcc--HHHHHHhhcCC---CEEEccccCchhHHHHHhc
Q 017114 172 PDKPLIVHVGRLGVEKS--LDFLKRVMDRLP--EARIAFIGDGPY--REELEKMFTGM---PAVFTGMLLGEELSQAYAS 242 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~--~~~l~~a~~~l~--~~~l~i~G~g~~--~~~l~~~~~~~---~v~~~g~~~~~~~~~~~~~ 242 (377)
+++.+++..|.-.+.|. .+.+.++++.+. ...++++|...+ .+......... .+.+.|..+-.|+..+++.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 45667777887667776 344666666663 367888887665 33333444332 5888888888999999999
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
||++|.+- +..+-=|.|+|+|+|+--
T Consensus 184 a~~~I~~D-----tg~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 184 ADLVIGND-----TGPMHLAAALGTPTVALF 209 (247)
T ss_dssp SSEEEEES-----SHHHHHHHHTT--EEEEE
T ss_pred CCEEEecC-----ChHHHHHHHHhCCEEEEe
Confidence 99999765 355667999999999763
No 170
>PLN03015 UDP-glucosyl transferase
Probab=97.13 E-value=0.041 Score=50.31 Aligned_cols=147 Identities=14% Similarity=0.084 Sum_probs=82.6
Q ss_pred CCCCCeEEEeeccc--ccccHHHHHHHHHhCCCceEEEEecC------------c-----cHHHHHHhhcCCCEEEcccc
Q 017114 171 EPDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIGDG------------P-----YREELEKMFTGMPAVFTGML 231 (377)
Q Consensus 171 ~~~~~~i~~~G~~~--~~k~~~~l~~a~~~l~~~~l~i~G~g------------~-----~~~~l~~~~~~~~v~~~g~~ 231 (377)
++...+.+.+|+.. +......+..+++..+. .|+.+=.. . ..+.+.+..++.++.+.+|+
T Consensus 265 ~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~-~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~ 343 (470)
T PLN03015 265 GERSVVYVCLGSGGTLTFEQTVELAWGLELSGQ-RFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWA 343 (470)
T ss_pred CCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCC-cEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecC
Confidence 34556677778764 23456777777777754 44443210 0 11223333344457788999
Q ss_pred CchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeC------CCCHHHH
Q 017114 232 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN------PGDLDDC 301 (377)
Q Consensus 232 ~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~------~~~~~~l 301 (377)
|+.++. +...+..+- ..+.-++++||+.+|+|+|+...-+ ....+. +.-+.|+-+. .-+.+++
T Consensus 344 PQ~~vL---~h~~vg~fv--tH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~--~~~gvg~~~~~~~~~~~v~~e~i 416 (470)
T PLN03015 344 PQVEIL---SHRSIGGFL--SHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLT--EEIGVAVRTSELPSEKVIGREEV 416 (470)
T ss_pred CHHHHh---ccCccCeEE--ecCCchhHHHHHHcCCCEEecccccchHHHHHHHH--HHhCeeEEecccccCCccCHHHH
Confidence 887764 444443222 2344578999999999999875422 222220 2234454442 1367899
Q ss_pred HHHHHHHhhC-HHHHHHHHHHHHHH
Q 017114 302 LSKLEPLLYN-QELRETMGQAARQE 325 (377)
Q Consensus 302 ~~~i~~~~~~-~~~~~~~~~~~~~~ 325 (377)
++++++++.. .+.-+++++++++.
T Consensus 417 ~~~v~~lm~~~~eeg~~~R~ra~~l 441 (470)
T PLN03015 417 ASLVRKIVAEEDEEGQKIRAKAEEV 441 (470)
T ss_pred HHHHHHHHccCcccHHHHHHHHHHH
Confidence 9999999952 12233444444443
No 171
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.13 E-value=0.17 Score=44.90 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=63.7
Q ss_pred CCCCeEEEeeccccccc--HHHHHHHHHhC--CCceEEEEecCcc--HHHHHHhhc---CC-CEEEccccCchhHHHHHh
Q 017114 172 PDKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGPY--REELEKMFT---GM-PAVFTGMLLGEELSQAYA 241 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~--~~~l~~a~~~l--~~~~l~i~G~g~~--~~~l~~~~~---~~-~v~~~g~~~~~~~~~~~~ 241 (377)
+++.+++..|.-.+.|. .+.+.++++.+ .+.++++.|+..+ .+..++... .. .+.+.|..+-.|+..+++
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 34567777776555565 34555555544 3688888875422 222233332 12 356788888899999999
Q ss_pred cCCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 242 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 242 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.||++|... +..+-=|.|+|+|+|+--
T Consensus 262 ~a~l~v~nD-----SGp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 262 HAQLFIGVD-----SAPAHIAAAVNTPLICLF 288 (352)
T ss_pred hCCEEEecC-----CHHHHHHHHcCCCEEEEE
Confidence 999999654 345666889999999753
No 172
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=97.10 E-value=0.1 Score=44.32 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=59.1
Q ss_pred CCCCeEEEeeccccc-----------ccHHHHHHHHHhCCCceEEEEecC-----ccHHHHHHhhcCCCEEEccccCchh
Q 017114 172 PDKPLIVHVGRLGVE-----------KSLDFLKRVMDRLPEARIAFIGDG-----PYREELEKMFTGMPAVFTGMLLGEE 235 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~-----------k~~~~l~~a~~~l~~~~l~i~G~g-----~~~~~l~~~~~~~~v~~~g~~~~~~ 235 (377)
.++..++++...... ...+.+..+++..|+.++++--.. .....+.+.....++.+.. +...
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 192 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIID--DDVN 192 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEEC--CCCC
Confidence 355566666655433 123444445555578887764421 1223333333333443332 2247
Q ss_pred HHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC
Q 017114 236 LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 236 ~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
+.+++..||.++.-+ +++-+||+.+|+||++...+
T Consensus 193 ~~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 193 LYELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecCc
Confidence 889999999998665 68999999999999986544
No 173
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.06 E-value=0.023 Score=51.83 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=78.8
Q ss_pred CCCCeEEEeeccc--ccccHHHHHHHHHhCCCceEEE-EecC---------cc------HHHHHHhhcCCCEEEccccCc
Q 017114 172 PDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAF-IGDG---------PY------REELEKMFTGMPAVFTGMLLG 233 (377)
Q Consensus 172 ~~~~~i~~~G~~~--~~k~~~~l~~a~~~l~~~~l~i-~G~g---------~~------~~~l~~~~~~~~v~~~g~~~~ 233 (377)
.+..+.+.+|++. +.+.++.+..+++..+. .|+. +... .. .+.+.+.. ..+..+.+|+|+
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~-~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ 337 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKR-PFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQ 337 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCC-CeEEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCH
Confidence 3456777788764 34567788888888865 4444 3321 10 01121112 235667799987
Q ss_pred hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCC-CCeeEEeC-----CCCHHHHHH
Q 017114 234 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQD-GKIGYLFN-----PGDLDDCLS 303 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~-~~~g~~~~-----~~~~~~l~~ 303 (377)
.+ +++..++..+-+ .+.-++++||+.+|+|+|+.... .....+ .+ -+.|+-+. .-+.+++++
T Consensus 338 ~~---iL~h~~vg~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~---~~~~~~G~~~~~~~~~~~~~e~l~~ 409 (455)
T PLN02152 338 IE---VLRHRAVGCFVT--HCGWSSSLESLVLGVPVVAFPMWSDQPANAKLL---EEIWKTGVRVRENSEGLVERGEIRR 409 (455)
T ss_pred HH---HhCCcccceEEe--eCCcccHHHHHHcCCCEEeccccccchHHHHHH---HHHhCceEEeecCcCCcCcHHHHHH
Confidence 66 566677544433 34567899999999999986532 222333 22 12343332 126789999
Q ss_pred HHHHHhhCHH
Q 017114 304 KLEPLLYNQE 313 (377)
Q Consensus 304 ~i~~~~~~~~ 313 (377)
++++++.++.
T Consensus 410 av~~vm~~~~ 419 (455)
T PLN02152 410 CLEAVMEEKS 419 (455)
T ss_pred HHHHHHhhhH
Confidence 9999997543
No 174
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.04 E-value=0.017 Score=53.26 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=75.9
Q ss_pred CCCeEEEeeccc--ccccHHHHHHHHHhCCCceEEEE-ecCc---------cHHHHHHhhcCCCEEEccccCchhHHHHH
Q 017114 173 DKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFI-GDGP---------YREELEKMFTGMPAVFTGMLLGEELSQAY 240 (377)
Q Consensus 173 ~~~~i~~~G~~~--~~k~~~~l~~a~~~l~~~~l~i~-G~g~---------~~~~l~~~~~~~~v~~~g~~~~~~~~~~~ 240 (377)
...+.+.+|++. ..+.+..+..+++..+ .+++++ +... ..+.+.+..++ +..+.+|+|+.++ +
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~-~~flw~~~~~~~~~~~~~~~lp~~~~er~~~-rg~v~~w~PQ~~i---L 354 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALELVG-CRFLWSIRTNPAEYASPYEPLPEGFMDRVMG-RGLVCGWAPQVEI---L 354 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCC-CcEEEEEecCcccccchhhhCChHHHHHhcc-CeeeeccCCHHHH---h
Confidence 446667788763 3345777777777764 455543 3211 11122222222 3456799987664 5
Q ss_pred hcCC--EEEeccCCcccchHHHHHHhcCCCeEEecCC----CCCc-cccccCCCCeeEEeCC---------CCHHHHHHH
Q 017114 241 ASGD--VFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPD-IIPEDQDGKIGYLFNP---------GDLDDCLSK 304 (377)
Q Consensus 241 ~~ad--i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~-~~~~~~~~~~g~~~~~---------~~~~~l~~~ 304 (377)
+... ++| ..+.-++++||+++|+|+|+.... .... .+ +.-+.|+.+.. -+.++++++
T Consensus 355 ~h~~vg~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~---~~~g~g~~~~~~~~~~~~~~~~~~~l~~a 427 (475)
T PLN02167 355 AHKAIGGFV----SHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV---KELGLAVELRLDYVSAYGEIVKADEIAGA 427 (475)
T ss_pred cCcccCeEE----eeCCcccHHHHHHcCCCEEeccccccchhhHHHHH---HHhCeeEEeecccccccCCcccHHHHHHH
Confidence 5544 455 234457899999999999987543 2222 23 33455665531 267899999
Q ss_pred HHHHhhCH
Q 017114 305 LEPLLYNQ 312 (377)
Q Consensus 305 i~~~~~~~ 312 (377)
+++++.++
T Consensus 428 v~~~m~~~ 435 (475)
T PLN02167 428 VRSLMDGE 435 (475)
T ss_pred HHHHhcCC
Confidence 99999754
No 175
>PLN02534 UDP-glycosyltransferase
Probab=96.96 E-value=0.033 Score=51.33 Aligned_cols=146 Identities=15% Similarity=0.125 Sum_probs=81.4
Q ss_pred CCCCeEEEeecccc--cccHHHHHHHHHhCCCceEEEEec-C---cc------HHHHHHhhcCCCEEEccccCchhHHHH
Q 017114 172 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGD-G---PY------REELEKMFTGMPAVFTGMLLGEELSQA 239 (377)
Q Consensus 172 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i~G~-g---~~------~~~l~~~~~~~~v~~~g~~~~~~~~~~ 239 (377)
+...+.+.+|+... .+.+..+..+++.... .|+.+=. . .. .+.+.+.....++.+.+|+|+.+ +
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~-~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~---i 357 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKK-PFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVL---I 357 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCC-CEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHH---H
Confidence 34566777887642 2335555577777644 4444332 1 11 12223333455788889998755 5
Q ss_pred HhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeC---------------CCCHHH
Q 017114 240 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN---------------PGDLDD 300 (377)
Q Consensus 240 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~---------------~~~~~~ 300 (377)
+...++..+- ..+..++++||+++|+|+|+....+ ....+. +.-+.|+-+. .-+.++
T Consensus 358 L~h~~v~~fv--tH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~--e~~~vGv~~~~~~~~~~~~~~~~~~~v~~ee 433 (491)
T PLN02534 358 LSHPAIGGFL--THCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIV--EVLRIGVRVGVEVPVRWGDEERVGVLVKKDE 433 (491)
T ss_pred hcCCccceEE--ecCccHHHHHHHHcCCCEEeccccccHHHHHHHHH--HhhcceEEecccccccccccccccCccCHHH
Confidence 6667763333 3455679999999999999875432 111110 1112222211 126789
Q ss_pred HHHHHHHHhhC-HHHHHHHHHHHHHH
Q 017114 301 CLSKLEPLLYN-QELRETMGQAARQE 325 (377)
Q Consensus 301 l~~~i~~~~~~-~~~~~~~~~~~~~~ 325 (377)
+++++++++.+ .+.-+++++++.++
T Consensus 434 v~~~v~~~m~~~~eeg~~~R~rA~el 459 (491)
T PLN02534 434 VEKAVKTLMDDGGEEGERRRRRAQEL 459 (491)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHH
Confidence 99999999962 22234444444443
No 176
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=96.93 E-value=0.0028 Score=42.02 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=51.1
Q ss_pred cCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCC-chhHHHHHHHHHhhCCCEEEEeccCC
Q 017114 19 YGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSP-GIMVFGALIIAKLLCVPIVMSYHTHV 90 (377)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~ 90 (377)
++++++.++..+.-...-++..+..+.-+++++-+++.||||.|.. ..+..-+++.++..|.+.|++-|+.+
T Consensus 14 ngLKVYYlP~~~~~~~~t~Pt~~~~~pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDHSLf 86 (90)
T PF08288_consen 14 NGLKVYYLPLKVFYNQCTLPTLFGSFPLLRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDHSLF 86 (90)
T ss_pred CCeEEEeecchhhhcCcchHHHHHhhHHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeeccccc
Confidence 4455555544433333334455666778889999999999999986 34445577788999999999999864
No 177
>PLN02555 limonoid glucosyltransferase
Probab=96.86 E-value=0.019 Score=52.83 Aligned_cols=142 Identities=16% Similarity=0.088 Sum_probs=82.6
Q ss_pred CCCeEEEeeccc--ccccHHHHHHHHHhCCCceEEEE-ec---C--c----cHHHHHHhhcCCCEEEccccCchhHHHHH
Q 017114 173 DKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFI-GD---G--P----YREELEKMFTGMPAVFTGMLLGEELSQAY 240 (377)
Q Consensus 173 ~~~~i~~~G~~~--~~k~~~~l~~a~~~l~~~~l~i~-G~---g--~----~~~~l~~~~~~~~v~~~g~~~~~~~~~~~ 240 (377)
...+.+.+|++. ..+.+..+..+++.. +.+++++ .. + . ..+.+.+.. ..++.+.+|+|+.++...
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~-~~~flW~~~~~~~~~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~~iL~H- 353 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNS-GVSFLWVMRPPHKDSGVEPHVLPEEFLEKA-GDKGKIVQWCPQEKVLAH- 353 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhc-CCeEEEEEecCcccccchhhcCChhhhhhc-CCceEEEecCCHHHHhCC-
Confidence 345667778763 234466666777665 4466554 21 1 0 111222212 235677799987765322
Q ss_pred hcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC----CCCccccccCCC-CeeEEeC-------CCCHHHHHHHHHHH
Q 017114 241 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDG-KIGYLFN-------PGDLDDCLSKLEPL 308 (377)
Q Consensus 241 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~~~~~~~-~~g~~~~-------~~~~~~l~~~i~~~ 308 (377)
.++.++| ..+.-++++||+.+|+|+|+...- .....+ .+. +.|+.+. .-+.+++.++++++
T Consensus 354 ~~v~~Fv----tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~---~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~v 426 (480)
T PLN02555 354 PSVACFV----THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL---VDVFKTGVRLCRGEAENKLITREEVAECLLEA 426 (480)
T ss_pred CccCeEE----ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHH---HHHhCceEEccCCccccCcCcHHHHHHHHHHH
Confidence 4455566 345567999999999999987543 222333 222 4565552 12578999999999
Q ss_pred hhCHHHHHHHHHHHHHH
Q 017114 309 LYNQELRETMGQAARQE 325 (377)
Q Consensus 309 ~~~~~~~~~~~~~~~~~ 325 (377)
+.+++ -++++++++++
T Consensus 427 m~~~~-g~~~r~ra~~l 442 (480)
T PLN02555 427 TVGEK-AAELKQNALKW 442 (480)
T ss_pred hcCch-HHHHHHHHHHH
Confidence 97643 34555555554
No 178
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=96.76 E-value=0.015 Score=46.15 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=52.4
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeE
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 121 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 121 (377)
.....+.+.++..+||++++.....+. ..+..++..|+|+++..--........ ...+..+.+.+++..|.|.
T Consensus 82 D~~~~~~rfl~~~~P~~~i~~EtElWP-nll~~a~~~~ip~~LvNarls~~s~~~------~~~~~~~~r~~l~~f~~i~ 154 (186)
T PF04413_consen 82 DFPWAVRRFLDHWRPDLLIWVETELWP-NLLREAKRRGIPVVLVNARLSERSFRR------YRRFPFLFRPLLSRFDRIL 154 (186)
T ss_dssp SSHHHHHHHHHHH--SEEEEES----H-HHHHH-----S-EEEEEE--------------------HHHHHHGGG-SEEE
T ss_pred cCHHHHHHHHHHhCCCEEEEEccccCH-HHHHHHhhcCCCEEEEeeeeccccchh------hhhhHHHHHHHHHhCCEEE
Confidence 335667889999999999887754332 234567888999987543332221111 1222457788899999999
Q ss_pred ecChhHHHHHHHhcccCCCcEEEecC
Q 017114 122 VPSVAIGKDLEAARVTAANKIRIWKK 147 (377)
Q Consensus 122 ~~s~~~~~~~~~~~~~~~~~i~~i~~ 147 (377)
+.|+...+.+.+.+. +++++.+..|
T Consensus 155 aqs~~da~r~~~lG~-~~~~v~v~Gn 179 (186)
T PF04413_consen 155 AQSEADAERFRKLGA-PPERVHVTGN 179 (186)
T ss_dssp ESSHHHHHHHHTTT--S--SEEE---
T ss_pred ECCHHHHHHHHHcCC-CcceEEEeCc
Confidence 999999999999886 6678888875
No 179
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=96.64 E-value=0.0089 Score=54.46 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=97.4
Q ss_pred EEEee-cccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC-Ccc
Q 017114 177 IVHVG-RLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SET 254 (377)
Q Consensus 177 i~~~G-~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~-~e~ 254 (377)
-+..| .....++-+..++++.+.-+++-.+.+.......+-. -|.-+|.++.+|+..+++.+.++|-... +|
T Consensus 280 AlVyGK~~~~w~~k~~~l~~l~~~~eih~tV~~~~~~~~~~P~-----~V~NHG~l~~~ef~~lL~~akvfiGlGfP~E- 353 (559)
T PF15024_consen 280 ALVYGKERYMWKGKEKYLDVLHKYMEIHGTVYDEPQRPPNVPS-----FVKNHGILSGDEFQQLLRKAKVFIGLGFPYE- 353 (559)
T ss_pred eEEEccchhhhcCcHHHHHHHHhhcEEEEEeccCCCCCcccch-----hhhhcCcCCHHHHHHHHHhhhEeeecCCCCC-
Confidence 33444 3445677788888887765555555543221111111 2666899999999999999999995332 22
Q ss_pred cchHHHHHHhcCCCeEEecCCCC-----Ccccc----------------ccCCCCeeEEeCCCCHHHHHHHHHHHhhCHH
Q 017114 255 LGLVVLEAMSSGIPVVGVRAGGI-----PDIIP----------------EDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 313 (377)
Q Consensus 255 ~~~~~~Ea~a~G~PvI~~~~~~~-----~~~~~----------------~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 313 (377)
|-+.+||+|+|+|.|-...... .+++. ........+.++.+|.+++.+||++++.++-
T Consensus 354 -gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~v 432 (559)
T PF15024_consen 354 -GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKAILATPV 432 (559)
T ss_pred -CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcCC
Confidence 5689999999999986543211 11110 0012334678888899999999999988642
Q ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 017114 314 LRETMGQAARQEM-EKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 314 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~ 344 (377)
.-++ -.|+.+.+.+++. .+.+
T Consensus 433 ---------~Py~P~efT~egmLeRv~-~~ie 454 (559)
T PF15024_consen 433 ---------EPYLPYEFTCEGMLERVN-ALIE 454 (559)
T ss_pred ---------CCcCCcccCHHHHHHHHH-HHHH
Confidence 1233 3688888888886 4443
No 180
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.14 Score=45.72 Aligned_cols=221 Identities=10% Similarity=0.085 Sum_probs=116.9
Q ss_pred HHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHH-HHh-hCCCCCCCeEEEeecccccc---
Q 017114 113 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR-WRL-SNGEPDKPLIVHVGRLGVEK--- 187 (377)
Q Consensus 113 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~G~~~~~k--- 187 (377)
.....|.+.+.+......+.+.++...+++.....+-....+.......... ... ...+.++.+|+|.-.+.+..
T Consensus 145 ~~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~ 224 (388)
T COG1887 145 VRNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLI 224 (388)
T ss_pred eeeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccCceEEecCCccCCcccc
Confidence 4456788888888888887777776666666555444333333332222222 111 12244688899988876654
Q ss_pred c---H--HHHHHHHH-hC--CCceEEEEecCccHHHHHHhhcCCCEEEccccC-chhHHHHHhcCCEEEeccCCcccchH
Q 017114 188 S---L--DFLKRVMD-RL--PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQAYASGDVFVMPSESETLGLV 258 (377)
Q Consensus 188 ~---~--~~l~~a~~-~l--~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~-~~~~~~~~~~adi~v~ps~~e~~~~~ 258 (377)
+ . +.-+..+. .+ .+..+++-=.....+.......... +.-.++ ..++..+|..+|++|. .++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~~~~ii~k~Hp~is~~~~~~~~~~~--~~~~vs~~~di~dll~~sDiLIT-----DySSv 297 (388)
T COG1887 225 GTQFFNLDIDIEKLKEKLGENEYVIIVKPHPLISDKIDKRYALDD--FVLDVSDNADINDLLLVSDILIT-----DYSSV 297 (388)
T ss_pred chhhhhhhhhHHHHHHhhccCCeEEEEecChhhhhhhhhhhhccc--eeEecccchhHHHHHhhhCEEEe-----echHH
Confidence 2 2 22222222 22 2344444332222222222111111 112222 3799999999999994 45789
Q ss_pred HHHHHhcCCCeEEe--cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHH
Q 017114 259 VLEAMSSGIPVVGV--RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRA 333 (377)
Q Consensus 259 ~~Ea~a~G~PvI~~--~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 333 (377)
++|+|...+|||.. |.... ..+..+.+....|-++. +.+++.++|.....+.+...+..+...+....+.-..
T Consensus 298 ~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~--~~~~li~ai~~~~~~~~~~~~k~~~~~~~~~~~~dg~ 375 (388)
T COG1887 298 IFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE--TQEELIDAIKPYDEDGNYDLEKLRVFNDKFNSYEDGR 375 (388)
T ss_pred HHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc--cHHHHHHHHHhhhcccchhHHHHHHHHHhhccccccc
Confidence 99999999999965 22111 11111112233455554 7788999998887754443333222222222333344
Q ss_pred HHHHHHHHH
Q 017114 334 ATRTIRNEQ 342 (377)
Q Consensus 334 ~~~~~~~~l 342 (377)
..+++.+.+
T Consensus 376 ss~ri~~~i 384 (388)
T COG1887 376 SSERILKLI 384 (388)
T ss_pred HHHHHHHHH
Confidence 444444433
No 181
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=96.58 E-value=0.009 Score=46.45 Aligned_cols=78 Identities=26% Similarity=0.237 Sum_probs=51.8
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhh------CCCEEEEeccCCcccccccccccchhhHHHHHHHHH
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLL------CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLH 114 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~------~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (377)
+........++.+.+||+|+++++... ++..++++.. +.++|+.-.-.-.. ..+ ..-+.++
T Consensus 78 l~~~~~~~~il~r~rPdvii~nGpg~~-vp~~~~~~l~~~~~~~~~kiIyIES~aRv~-----~lS-------lTGklly 144 (170)
T PF08660_consen 78 LRAFLQSLRILRRERPDVIISNGPGTC-VPVCLAAKLLRLLGLRGSKIIYIESFARVK-----TLS-------LTGKLLY 144 (170)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcee-eHHHHHHHHHHHhhccCCcEEEEEeeeecC-----CCc-------hHHHHHH
Confidence 444566777888899999999998654 3344466777 88988743211000 001 2335677
Q ss_pred hcCCeeEecChhHHHHH
Q 017114 115 RAADLTLVPSVAIGKDL 131 (377)
Q Consensus 115 ~~~d~ii~~s~~~~~~~ 131 (377)
..+|.+++.-+++++.+
T Consensus 145 ~~aD~f~VQW~~l~~~y 161 (170)
T PF08660_consen 145 PFADRFIVQWEELAEKY 161 (170)
T ss_pred HhCCEEEEcCHHHHhHC
Confidence 78999999998887765
No 182
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=96.52 E-value=0.42 Score=41.34 Aligned_cols=252 Identities=13% Similarity=0.100 Sum_probs=144.0
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccc------cccccccchhhHHHHHHHHHhcCCeeEecChhH-
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI------PRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI- 127 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~- 127 (377)
+.||++=-+.... .......+.+|.|+|....+...... ....... +.-...|.|.+.-+..
T Consensus 73 ~lDVlIEmg~ql~-~~~~~~~~~~G~KvV~y~~GndYv~~~E~~lF~k~~~~~----------f~~~~yD~VW~lPq~~~ 141 (364)
T PF10933_consen 73 ELDVLIEMGAQLD-PEWLDYMRARGGKVVSYRCGNDYVMDIESMLFNKPSGHL----------FNGAPYDEVWTLPQFEN 141 (364)
T ss_pred cCCEEEEccCccC-HHHHHHHHHcCCeEEEEeCCchHHHHhhHHhcCCCCCcc----------CCCCCCceeEeccchhh
Confidence 7799987664322 22233557789999988776321110 0000000 1124578887665533
Q ss_pred --HHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH-HHHHhhCCC--CCCCeEEEeeccccccc---HHHHH-HHHHh
Q 017114 128 --GKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE-MRWRLSNGE--PDKPLIVHVGRLGVEKS---LDFLK-RVMDR 198 (377)
Q Consensus 128 --~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~~~G~~~~~k~---~~~l~-~a~~~ 198 (377)
..++.... ..++.++|.--++-+++.....-. ...+++..+ +.+.+-+|=-++.-.|. .-+++ +|.+.
T Consensus 142 ~~~~yl~~l~---r~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~aYR~ 218 (364)
T PF10933_consen 142 TCAPYLETLH---RCPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEAYRA 218 (364)
T ss_pred hchHHHHHHh---cCCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHHHHh
Confidence 23444433 356778886544443322111100 000111111 22223334345555555 22333 34455
Q ss_pred CCC-ceEEEEecCc---cHHHHHHhh------cCCCEEEccccCchhHHHHHhc-CCEEEeccCCcccchHHHHHHhcCC
Q 017114 199 LPE-ARIAFIGDGP---YREELEKMF------TGMPAVFTGMLLGEELSQAYAS-GDVFVMPSESETLGLVVLEAMSSGI 267 (377)
Q Consensus 199 l~~-~~l~i~G~g~---~~~~l~~~~------~~~~v~~~g~~~~~~~~~~~~~-adi~v~ps~~e~~~~~~~Ea~a~G~ 267 (377)
-|+ ++.+.+.+.. +...+...+ ++....|.|.. +++.+|++ .|++|.--+..+....-+|++.-|=
T Consensus 219 ~P~~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~tD~VvSHqWeN~lNYlY~daLyggY 295 (364)
T PF10933_consen 219 DPDAVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQHTDAVVSHQWENPLNYLYYDALYGGY 295 (364)
T ss_pred ChhhcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhCCCEEEeccccchhhHHHHHHHhcCC
Confidence 565 4444444321 222333332 23346777876 67777776 7999877777788889999999999
Q ss_pred CeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCHHH
Q 017114 268 PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRA 333 (377)
Q Consensus 268 PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~s~~~ 333 (377)
|.|-. ..++ ++.|+.++..|..+=++++.+++. .....+...+++++.+..++..+
T Consensus 296 PLVHN-----S~~l-----~d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~n 352 (364)
T PF10933_consen 296 PLVHN-----SPLL-----KDVGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLLDRLSPEN 352 (364)
T ss_pred CcccC-----cchh-----cccCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhCCCC
Confidence 99964 4566 448999999999999999988887 44556778888888887665443
No 183
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=96.41 E-value=0.011 Score=49.74 Aligned_cols=81 Identities=14% Similarity=0.008 Sum_probs=58.3
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccc------cccc------cccchhhHHHHHHHHHhcCCeeEe
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI------PRYT------FSWLVKPMWLVIKFLHRAADLTLV 122 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------~~~~------~~~~~~~~~~~~~~~~~~~d~ii~ 122 (377)
+.|+.|+.+.+..++.+.+.+...|+|++++-|+.+.... ..+. .....+.+..+-+..++.||.|++
T Consensus 172 ~advyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~I~~ 251 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADRITP 251 (268)
T ss_pred CCCEEecCCccHHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCeecc
Confidence 6799999998888898888999999999999999653311 1111 122233445667788999999999
Q ss_pred cChhHHHHHHHhc
Q 017114 123 PSVAIGKDLEAAR 135 (377)
Q Consensus 123 ~s~~~~~~~~~~~ 135 (377)
..+...+.-.+.|
T Consensus 252 l~~~n~~~q~~~G 264 (268)
T PF11997_consen 252 LYEYNREWQIELG 264 (268)
T ss_pred cchhhHHHHHHhC
Confidence 9997555544433
No 184
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.059 Score=51.29 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=86.2
Q ss_pred CCCCeEEEeecccccccHHHHHHHH----HhC-----CCceEEEEecC-c---cHHHHHHhh----c----CCCEEEccc
Q 017114 172 PDKPLIVHVGRLGVEKSLDFLKRVM----DRL-----PEARIAFIGDG-P---YREELEKMF----T----GMPAVFTGM 230 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~~~~l~~a~----~~l-----~~~~l~i~G~g-~---~~~~l~~~~----~----~~~v~~~g~ 230 (377)
++...++++-|+..+|...+.+.-+ ..+ |.+++++.|.. | ..+.+.+++ + ..+|.|++.
T Consensus 485 p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~n 564 (750)
T COG0058 485 PNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPN 564 (750)
T ss_pred CCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCC
Confidence 4567888899999999865443322 222 33666777742 1 112222222 1 235888887
Q ss_pred cCchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCC
Q 017114 231 LLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPG 296 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~ 296 (377)
.+-.-...++.+||+-...|. .|+.|++-+-++..|.+-|+|-.|...|+.+. ..+.+|+++...
T Consensus 565 YdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~-vg~~N~~~fG~~ 631 (750)
T COG0058 565 YDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEH-VGGENGWIFGET 631 (750)
T ss_pred CChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHh-cCCCceEEeCCc
Confidence 755555678899999988765 68999999999999999999999999898821 178899998753
No 185
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.21 E-value=0.64 Score=39.37 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=95.2
Q ss_pred HHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCC
Q 017114 69 FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 148 (377)
Q Consensus 69 ~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g 148 (377)
+.....++..++|+++.-.+..| ......+...+.+++.++.+.+=.+...+.+.+.+. +. ++.++|..
T Consensus 89 ~~~~~~~~~~~~pv~~~g~g~gp---------~~~~~~~~~~~~~l~~~~~i~vRD~~S~~~l~~~g~-~~-~~~~~~D~ 157 (286)
T PF04230_consen 89 LRWLFLAKKLGKPVIILGQGIGP---------FRSEEFKKLLRRILSKADYISVRDEYSYELLKKLGI-SG-NVKLVPDP 157 (286)
T ss_pred HHHHHHHHhcCCCeEEECceECc---------cCCHHHHHHHHHHHhCCCEEEECCHHHHHHHHHcCC-CC-CcEEEeCc
Confidence 33455777889999886655422 112333456777888899988877777775666553 33 77777754
Q ss_pred CCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecc---cccccHHHHHHHHHhC--CC--ceEEEEecCc--cH-HHHHH
Q 017114 149 VDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL---GVEKSLDFLKRVMDRL--PE--ARIAFIGDGP--YR-EELEK 218 (377)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~---~~~k~~~~l~~a~~~l--~~--~~l~i~G~g~--~~-~~l~~ 218 (377)
+- ...+...... ..........+... ....-.+.+.+.+..+ .. ..+....... .. .....
T Consensus 158 af--~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (286)
T PF04230_consen 158 AF--LLPPSYPDED-------KSKPKRNYISVSNSPSRNNEEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNE 228 (286)
T ss_pred hh--hcCccccccc-------ccccccceeeeccccchhhhhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHh
Confidence 41 1111111100 00001112222211 1222344444444444 22 2232233211 11 11111
Q ss_pred ----hhcCCC-EEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecC
Q 017114 219 ----MFTGMP-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 274 (377)
Q Consensus 219 ----~~~~~~-v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 274 (377)
.....+ .......+.+++..++++||++|.... -..+=|+++|+|+|+-+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~Rl-----H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 229 IDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRL-----HGAILALSLGVPVIAISY 284 (286)
T ss_pred hhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCC-----HHHHHHHHcCCCEEEEec
Confidence 111112 445556666899999999999996554 346669999999997643
No 186
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.06 E-value=0.22 Score=43.54 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=63.3
Q ss_pred CCCCeEEEeeccccccc--HHHHHHHHHhC--CCceEEEEecCc-cHHHHHHhhcCC-CEEEccccCchhHHHHHhcCCE
Q 017114 172 PDKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGP-YREELEKMFTGM-PAVFTGMLLGEELSQAYASGDV 245 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~--~~~l~~a~~~l--~~~~l~i~G~g~-~~~~l~~~~~~~-~v~~~g~~~~~~~~~~~~~adi 245 (377)
+++.+++..|.-.+.|. .+.+.++++.+ .+.++++.|+++ +.+..++..... +..+.|..+-.|+..+++.||+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l 257 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADA 257 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCE
Confidence 35566777775555555 34555555554 367888875444 333344433322 3456787777899999999999
Q ss_pred EEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 246 FVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 246 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
+|..- +..+-=|.|+|+|+|+--
T Consensus 258 ~I~~D-----Sgp~HlAaa~g~P~i~lf 280 (319)
T TIGR02193 258 VVGVD-----TGLTHLAAALDKPTVTLY 280 (319)
T ss_pred EEeCC-----ChHHHHHHHcCCCEEEEE
Confidence 99654 345666889999999753
No 187
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.84 E-value=0.15 Score=49.37 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=86.4
Q ss_pred CCCCCeEEEeecccccccHHH-HHHHHHhC------C-----CceEEEEecC-c---cHHHHHHh----hc---C-----
Q 017114 171 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDG-P---YREELEKM----FT---G----- 222 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~~k~~~~-l~~a~~~l------~-----~~~l~i~G~g-~---~~~~l~~~----~~---~----- 222 (377)
.++...++++-|+..+|...+ ++..+..+ | +.++++.|.. | ..+.+-++ ++ .
T Consensus 540 dp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~ 619 (815)
T PRK14986 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIG 619 (815)
T ss_pred CcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhc
Confidence 345677888889999998776 55543332 2 3678888842 1 11122111 11 1
Q ss_pred --CCEEEccccCchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCccccccCC--CCeeEEeCC
Q 017114 223 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNP 295 (377)
Q Consensus 223 --~~v~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~--~~~g~~~~~ 295 (377)
.+|.|+....-+-...++..||+-...|. .|+.|++=+-+|..|.+.+++-.|...|+. ++ +++|+.+..
T Consensus 620 ~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~---e~vG~eN~~~fG~ 695 (815)
T PRK14986 620 DKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML---EHVGEENIFIFGN 695 (815)
T ss_pred CceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHH---HhcCCCcEEEeCC
Confidence 14778877655556678999999998776 689999999999999999999999999988 54 778888854
No 188
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.84 E-value=0.32 Score=42.55 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=62.1
Q ss_pred CCeEEEeeccccccc--HHHHHHHHHhC--CCceEEEE-ecCccHHHHHHhhcCC-CEEEccccCchhHHHHHhcCCEEE
Q 017114 174 KPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFI-GDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVFV 247 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~--~~~l~~a~~~l--~~~~l~i~-G~g~~~~~l~~~~~~~-~v~~~g~~~~~~~~~~~~~adi~v 247 (377)
+.+++..|.-...|. .+.+.++++.+ .+.++++. |...+.+..++..... ++.+.|..+-.|+..+++.||++|
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I 258 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVV 258 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEE
Confidence 444445554334443 33455555444 36778776 5444444444443332 466778888899999999999999
Q ss_pred eccCCcccchHHHHHHhcCCCeEEecCC
Q 017114 248 MPSESETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
... +..+-=|.|+|+|+|+--.+
T Consensus 259 ~nD-----SGp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 259 SVD-----TGLSHLTAALDRPNITLYGP 281 (322)
T ss_pred ecC-----CcHHHHHHHhCCCEEEEECC
Confidence 655 34566699999999975433
No 189
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=95.58 E-value=0.21 Score=46.72 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=82.6
Q ss_pred CCeEEEeeccc-----ccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhc---CCCEEEccccCchhHHHHHhcCCE
Q 017114 174 KPLIVHVGRLG-----VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT---GMPAVFTGMLLGEELSQAYASGDV 245 (377)
Q Consensus 174 ~~~i~~~G~~~-----~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~---~~~v~~~g~~~~~~~~~~~~~adi 245 (377)
..+++.+|+.. +.+-...+..+++.++++.|+..=.+.....+.+-.. ..+|...+|+|+.++. +....+
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~ll--l~H~~v 355 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLL--LDHPAV 355 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHh--cCCCcC
Confidence 56666677764 3455777888888887777666544332222222222 2368888999998875 222222
Q ss_pred EEeccCCcccchHHHHHHhcCCCeEEec----CCCCCccccccCCCCeeEEeCC-CCHHHHHHHHHHHhhCHHHHHHHHH
Q 017114 246 FVMPSESETLGLVVLEAMSSGIPVVGVR----AGGIPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQ 320 (377)
Q Consensus 246 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~ 320 (377)
..+-+ .|.=++++|++.+|+|+|+.+ ..-....+. +.+..+.+... .+...+.+++..++.+++..+...+
T Consensus 356 ~~FvT--HgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~--~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~ 431 (496)
T KOG1192|consen 356 GGFVT--HGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLV--RHGGGGVLDKRDLVSEELLEAIKEILENEEYKEAAKR 431 (496)
T ss_pred cEEEE--CCcccHHHHHHhcCCceecCCccccchhHHHHHH--hCCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHH
Confidence 22222 222345699999999999543 222333331 33444444332 1223388899999888776555444
Q ss_pred HHH
Q 017114 321 AAR 323 (377)
Q Consensus 321 ~~~ 323 (377)
-+.
T Consensus 432 l~~ 434 (496)
T KOG1192|consen 432 LSE 434 (496)
T ss_pred HHH
Confidence 443
No 190
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=95.57 E-value=0.13 Score=48.89 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=74.5
Q ss_pred CCCCCeEEEeecccccccHHH-HHHHH---HhC---C-----CceEEEEecC-c---cHHHHHHh-------hcCC----
Q 017114 171 EPDKPLIVHVGRLGVEKSLDF-LKRVM---DRL---P-----EARIAFIGDG-P---YREELEKM-------FTGM---- 223 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~~k~~~~-l~~a~---~~l---~-----~~~l~i~G~g-~---~~~~l~~~-------~~~~---- 223 (377)
.++....+++-|+..+|...+ ++..+ .++ | ++++++.|.. | ..+.+.++ +..+
T Consensus 441 dp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~ 520 (713)
T PF00343_consen 441 DPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVG 520 (713)
T ss_dssp -TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTC
T ss_pred CcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhc
Confidence 345667788999999998766 33322 222 2 4678888843 1 11222222 1111
Q ss_pred ---CEEEccccCchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCC
Q 017114 224 ---PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP 295 (377)
Q Consensus 224 ---~v~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~ 295 (377)
+|.|+....-.-...++..||+-+..+. .|+.|++-+-+|..|.+.+++-.|...|+.+. ...++.+++..
T Consensus 521 ~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~-vG~eN~fiFG~ 596 (713)
T PF00343_consen 521 DRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEA-VGEENIFIFGL 596 (713)
T ss_dssp CGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHH-H-GGGSEEES-
T ss_pred cceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHh-cCCCcEEEcCC
Confidence 4788887755566678999999998775 69999999999999999999999988887621 12346677743
No 191
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.40 E-value=0.21 Score=48.34 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=86.1
Q ss_pred CCCCCeEEEeecccccccHHH-HHHHHHhC------C-----CceEEEEecC-c---cHHHHHHh-------hcCC----
Q 017114 171 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDG-P---YREELEKM-------FTGM---- 223 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~~k~~~~-l~~a~~~l------~-----~~~l~i~G~g-~---~~~~l~~~-------~~~~---- 223 (377)
.++....+++-|+..+|...+ ++..+..+ | +.++++.|.. | ..+.+-++ +..+
T Consensus 527 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 606 (797)
T cd04300 527 DPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVG 606 (797)
T ss_pred CCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcC
Confidence 456678888999999998777 55543322 3 2667777742 1 11122111 1111
Q ss_pred ---CEEEccccCchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCccccccCC--CCeeEEeCC
Q 017114 224 ---PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNP 295 (377)
Q Consensus 224 ---~v~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~--~~~g~~~~~ 295 (377)
+|.|+....-+-...++.+||+-...|. .|+.|++=+-+|..|.+.+++-.|...|+. ++ +++++++..
T Consensus 607 ~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~---e~vG~eN~fiFG~ 682 (797)
T cd04300 607 DKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIA---EEVGEENIFIFGL 682 (797)
T ss_pred CceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHH---HHhCcCcEEEeCC
Confidence 4778777655556678999999988776 689999999999999999999999988888 44 668888753
No 192
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=95.18 E-value=0.082 Score=50.82 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=84.6
Q ss_pred CCCCCeEEEeecccccccHHH-HHHHHHhC------C-----CceEEEEecC-c---cHHHHHHh-------hcC-----
Q 017114 171 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDG-P---YREELEKM-------FTG----- 222 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~~k~~~~-l~~a~~~l------~-----~~~l~i~G~g-~---~~~~l~~~-------~~~----- 222 (377)
.++...++++-|+..+|...+ ++..+..+ | +.++++.|.. | ..+.+-++ ++.
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 605 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVG 605 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhC
Confidence 345566777889999998776 54443322 3 3677888842 1 11122111 211
Q ss_pred --CCEEEccccCchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCccccccCC--CCeeEEeCC
Q 017114 223 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNP 295 (377)
Q Consensus 223 --~~v~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~--~~~g~~~~~ 295 (377)
.+|.|+....-.-...++.+||+-...|. .|+.|++=+-+|..|.+.+++-.|...|+. ++ +++|+.+..
T Consensus 606 ~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~---e~vG~eN~f~fG~ 681 (798)
T PRK14985 606 DKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIA---EQVGEENIFIFGH 681 (798)
T ss_pred CceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHH---HHhCcCcEEEeCC
Confidence 14788877655566678999999988776 689999999999999999999999988887 43 668888753
No 193
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.83 E-value=0.13 Score=49.66 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=85.3
Q ss_pred CCCCCeEEEeecccccccHHH-HHHHHHhC------C-----CceEEEEecC-c---cHHHHHHhh-------cC-----
Q 017114 171 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDG-P---YREELEKMF-------TG----- 222 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~~k~~~~-l~~a~~~l------~-----~~~l~i~G~g-~---~~~~l~~~~-------~~----- 222 (377)
.++....+++-|+..+|...+ ++..+..+ | +.++++.|.. | ..+.+-+++ ..
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~ 603 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVG 603 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhC
Confidence 345667778889999998777 55544332 3 3577788842 1 112222211 11
Q ss_pred --CCEEEccccCchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCccccccCC--CCeeEEeCC
Q 017114 223 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNP 295 (377)
Q Consensus 223 --~~v~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~--~~~g~~~~~ 295 (377)
.+|.|++...-+-...++.+||+-...|. .|+.|++=+-+|..|.+.+++-.|...|+. ++ +++++++..
T Consensus 604 ~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~---e~vG~eN~fiFG~ 679 (794)
T TIGR02093 604 DKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIR---EEVGAENIFIFGL 679 (794)
T ss_pred CceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHH---HHhCcccEEEcCC
Confidence 14778877655566678999999988776 689999999999999999999999888888 44 667887753
No 194
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.80 E-value=0.19 Score=46.45 Aligned_cols=184 Identities=13% Similarity=0.186 Sum_probs=117.7
Q ss_pred CCCCCeEEEeecccc--cccHHHHHHHHHhCCCceEEEE-----ecCccHHHHHHhhc-CCCEEEccccCchhHHHHHhc
Q 017114 171 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-----GDGPYREELEKMFT-GMPAVFTGMLLGEELSQAYAS 242 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i~-----G~g~~~~~l~~~~~-~~~v~~~g~~~~~~~~~~~~~ 242 (377)
+++.+++..+..+.. -+-++.-.+.++..|+..|.+. |.......+.++.- ..+|.|.+....+|=.+-..-
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~L 835 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQL 835 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhh
Confidence 344444544544432 1335566777788898666554 44333344444433 347999888877787788888
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcccccc--CCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHH
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED--QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 320 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 320 (377)
+|+.+-+....|. ++-+|.+.+|+|+|+-....+..-+... ..-+.|-++ ..+.++..+.-.++-.|.+..+.++.
T Consensus 836 aDv~LDTplcnGh-TTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hli-ak~~eEY~~iaV~Latd~~~L~~lr~ 913 (966)
T KOG4626|consen 836 ADVCLDTPLCNGH-TTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLI-AKNREEYVQIAVRLATDKEYLKKLRA 913 (966)
T ss_pred hhhcccCcCcCCc-ccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHH-hhhHHHHHHHHHHhhcCHHHHHHHHH
Confidence 9999866554433 4567999999999975433222211000 112223322 34778888888888889998888888
Q ss_pred HHHHHH-H--hcCHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 017114 321 AARQEM-E--KYDWRAATRTIRNEQYNAAIWFWRKKRAQL 357 (377)
Q Consensus 321 ~~~~~~-~--~~s~~~~~~~~~~~ly~~~~~~~~~~~~~~ 357 (377)
.-++.. . -|+-.+.+..++ .+|....++...-..+.
T Consensus 914 ~l~~~r~~splfd~~q~~~~LE-~~y~~MW~~y~~G~~p~ 952 (966)
T KOG4626|consen 914 KLRKARASSPLFDTKQYAKGLE-RLYLQMWKKYCSGEVPD 952 (966)
T ss_pred HHHHHhcCCCccCchHHHHHHH-HHHHHHHHHhccCCCCc
Confidence 777764 2 399999999998 68988887776544433
No 195
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=94.71 E-value=2.9 Score=37.07 Aligned_cols=235 Identities=14% Similarity=0.163 Sum_probs=122.4
Q ss_pred CCCEEEeCCCc----------hhHHHH-HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEec
Q 017114 55 KPDIIHASSPG----------IMVFGA-LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 55 ~pDii~~~~~~----------~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
+.|++++.+.. .+.+.. +.+++..++|+++.-|+..|. .....+++....++.+..+++=
T Consensus 89 ~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svGP~---------~~~~s~~~~~~~~~~~s~i~vR 159 (385)
T COG2327 89 KADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVGPL---------KHPLSRQLLNYVLGGCSAISVR 159 (385)
T ss_pred hCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEeccCCCc---------cCHHHHHHHHHHhcCCcEEEEe
Confidence 78988875421 112222 567788999999988886543 2344556778888999999998
Q ss_pred ChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccccccc--------HHHHHHH
Q 017114 124 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS--------LDFLKRV 195 (377)
Q Consensus 124 s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~--------~~~l~~a 195 (377)
.+...+.++..+. + ..... |.-+.-+...+.... . ....+.+...+.+-.+.+... ...+++-
T Consensus 160 D~~S~~llk~~gi-~---a~l~~---D~Af~L~~~~~~~~~-~-~~~~~~~~~~i~lr~~~~~~t~~~~~~~~v~~~l~~ 230 (385)
T COG2327 160 DPVSYELLKQLGI-N---ARLVT---DPAFLLPASSQNATA-S-DVEAREKTVAITLRGLHPDNTAQRSILKYVNEALDL 230 (385)
T ss_pred cHHhHHHHHHcCC-C---eEeec---Ccceecccccccccc-c-ccccccceEEEEecccCCchhhhHHHHHHHHHHHHH
Confidence 8888888886654 2 22222 332222111111000 0 001122333333433333221 2223333
Q ss_pred HHhC--CCceEEE--EecCccHHHHHHh---hcC-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCC
Q 017114 196 MDRL--PEARIAF--IGDGPYREELEKM---FTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI 267 (377)
Q Consensus 196 ~~~l--~~~~l~i--~G~g~~~~~l~~~---~~~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~ 267 (377)
++.. ..+++.. .+........... ... .++.+..-...+++...+++||+.|..-. -+++=|++.|+
T Consensus 231 ~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-----HsaI~al~~g~ 305 (385)
T COG2327 231 VERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-----HSAIMALAFGV 305 (385)
T ss_pred HHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh-----HHHHHHHhcCC
Confidence 2222 2233322 2332222222222 221 24555443334677889999999984432 35677999999
Q ss_pred CeEEecCC-CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 268 PVVGVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 268 PvI~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
|+|+-... -...+...-.-.+...-..+.+.+.+.+...+.+.+.
T Consensus 306 p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~ 351 (385)
T COG2327 306 PAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKL 351 (385)
T ss_pred CeEEEeecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhcc
Confidence 99986543 2222221001111223334567788888887777643
No 196
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.69 E-value=2.5 Score=37.97 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=64.1
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCC-
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES- 252 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~- 252 (377)
...++++|.- +-.....+.+..-.-.+++|++. ..+..++++++.+ ...++.+++..++..+|+++..+..
T Consensus 178 ~~~vlvIGAG---em~~lva~~L~~~g~~~i~IaNR--T~erA~~La~~~~---~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 178 DKKVLVIGAG---EMGELVAKHLAEKGVKKITIANR--TLERAEELAKKLG---AEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred cCeEEEEccc---HHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHHhC---CeeecHHHHHHhhhhCCEEEEecCCC
Confidence 3445666531 22344444444432245555553 3344455555544 2345558999999999999886532
Q ss_pred -cccchHHH-HHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHH
Q 017114 253 -ETLGLVVL-EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 253 -e~~~~~~~-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
.-.+...+ +++.-....+..|.+-.+++-+...+-.+.++++-+|.+.+++
T Consensus 250 ~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 250 HPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred ccccCHHHHHHHHhcccCeEEEEecCCCCCCccccCcCCeEEEehhhHHHHHH
Confidence 22333334 4444444456777776666542212223456665555444433
No 197
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=94.65 E-value=0.42 Score=35.62 Aligned_cols=90 Identities=21% Similarity=0.344 Sum_probs=56.1
Q ss_pred CeEEEeecccccccHHHHHHH---------HHhCCCceEEE-EecC-ccH-HHHHHhhcCCCEEEccccCchhHHHHHhc
Q 017114 175 PLIVHVGRLGVEKSLDFLKRV---------MDRLPEARIAF-IGDG-PYR-EELEKMFTGMPAVFTGMLLGEELSQAYAS 242 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a---------~~~l~~~~l~i-~G~g-~~~-~~l~~~~~~~~v~~~g~~~~~~~~~~~~~ 242 (377)
.+++.+|.-. ++.++.+ +.+..=.+++| +|.| ... +......+...+.+.++--...+.+.++.
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 4677888654 3444433 33332245554 6766 211 12222223345666666555788999999
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
||+++ ..+...+++|.+..|+|.|+.
T Consensus 81 AdlVI----sHAGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 81 ADLVI----SHAGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred ccEEE----ecCCcchHHHHHHcCCCEEEE
Confidence 99999 455678999999999998754
No 198
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=94.48 E-value=0.052 Score=47.03 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=50.9
Q ss_pred hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCC-CeEEecC--CCCCccccccCCCCeeEEeCCCCHHHHHHHHH
Q 017114 234 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGI-PVVGVRA--GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLE 306 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~-PvI~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~ 306 (377)
.+..+.|++|.+++.|.-...+..-++|||++|+ |||.++. -...+.+ .-....+.++..+..+|.+.|+
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~l---dw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVL---DWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred hHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCccccc---CHHHEEEEECHHHHHHHHHHHh
Confidence 5688999999999998876668899999999995 7887653 2445555 4455667776666655555544
No 199
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.26 E-value=0.16 Score=35.38 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=49.4
Q ss_pred EEEEec-CccHHHHHHhhcCCC--EEEc---cccCchh--HHHHHhcCCEEEeccCCcc---cchHHHHHHhcCCCeEEe
Q 017114 204 IAFIGD-GPYREELEKMFTGMP--AVFT---GMLLGEE--LSQAYASGDVFVMPSESET---LGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 204 l~i~G~-g~~~~~l~~~~~~~~--v~~~---g~~~~~~--~~~~~~~adi~v~ps~~e~---~~~~~~Ea~a~G~PvI~~ 272 (377)
++|+|+ ......+++.+++.+ ..++ +.....+ ++..+..||++|++..+-+ .-..--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 567775 455666676666654 2333 3333344 8999999999999876432 334455677889999987
Q ss_pred cCCCCCc
Q 017114 273 RAGGIPD 279 (377)
Q Consensus 273 ~~~~~~~ 279 (377)
+..+...
T Consensus 82 ~~~~~~~ 88 (97)
T PF10087_consen 82 RSRGVSS 88 (97)
T ss_pred CCCCHHH
Confidence 7555443
No 200
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=93.19 E-value=0.61 Score=42.33 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=41.6
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccc-----hhhHH--HHHHHHHhcCCeeEecChh
Q 017114 54 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWL-----VKPMW--LVIKFLHRAADLTLVPSVA 126 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~d~ii~~s~~ 126 (377)
.+||+||.|... ..+.+.+++...|+|.+.+-|...-..+......|. .+... ..+...++.||.||+.+..
T Consensus 400 ~~PdlI~GnYsD-gnlvA~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST~Q 478 (550)
T PF00862_consen 400 GKPDLIIGNYSD-GNLVASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITSTYQ 478 (550)
T ss_dssp S--SEEEEEHHH-HHHHHHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESSHH
T ss_pred CCCcEEEeccCc-chHHHHHHHhhcCCceehhhhccccccccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcchH
Confidence 589999998743 446667789999999999999753322221111111 11111 2345677899999987754
Q ss_pred H
Q 017114 127 I 127 (377)
Q Consensus 127 ~ 127 (377)
.
T Consensus 479 E 479 (550)
T PF00862_consen 479 E 479 (550)
T ss_dssp H
T ss_pred h
Confidence 3
No 201
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.27 E-value=0.93 Score=32.77 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=41.4
Q ss_pred HHHHHhcCCEEEeccC--Ccccc--hHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 236 LSQAYASGDVFVMPSE--SETLG--LVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 236 ~~~~~~~adi~v~ps~--~e~~~--~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
-..++..||++|.-.- +..+. .-.--|.|+|+|.|+-..+....-+ ++-+.....-..+++...+.+..++
T Consensus 69 T~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpL---KEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 69 TRKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPL---KEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccH---HHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 4578999999886531 22221 1233467999999987666555555 3333333333346666666665543
No 202
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=91.80 E-value=0.29 Score=35.93 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCceEEEEecCcc----HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHh
Q 017114 189 LDFLKRVMDRLPEARIAFIGDGPY----REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 264 (377)
Q Consensus 189 ~~~l~~a~~~l~~~~l~i~G~g~~----~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 264 (377)
-..+.+++...+++++.-.-+... .+.+-+... +.-.|..-.+++.+++..+|++|--|..+..-..+-.++.
T Consensus 13 G~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~---~~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~ 89 (124)
T PF01113_consen 13 GRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAG---IGPLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALK 89 (124)
T ss_dssp HHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCT---SST-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhC---cCCcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHh
Confidence 355667777767766654432211 001111111 1112222236788899999999988876666666777889
Q ss_pred cCCCeEEecCCCC
Q 017114 265 SGIPVVGVRAGGI 277 (377)
Q Consensus 265 ~G~PvI~~~~~~~ 277 (377)
+|+|+|+...|..
T Consensus 90 ~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 90 HGVPLVIGTTGFS 102 (124)
T ss_dssp HT-EEEEE-SSSH
T ss_pred CCCCEEEECCCCC
Confidence 9999997666543
No 203
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=91.69 E-value=0.31 Score=32.39 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccc
Q 017114 112 FLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG 184 (377)
Q Consensus 112 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 184 (377)
.+...+|.|++......+.+++.|. .++..+|-++++..+.+....... ...-.--|.|+|++.
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~~G~---~~V~yLPLAa~~~~~~p~~~~~~~------~~~~~~dIsFVG~~y 77 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRNLGA---ENVFYLPLAANPERFRPIPVDPEE------RKKYECDISFVGSLY 77 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHHcCC---CCEEEccccCCHHHhCcccCCccc------ccccCCCEEEeCcCc
Confidence 4567899999999999999999763 689999999999999887543111 112334599999864
No 204
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=91.37 E-value=1.3 Score=32.05 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=44.2
Q ss_pred HHHHHhcCCEEEeccC--Ccccc--hHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 236 LSQAYASGDVFVMPSE--SETLG--LVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 236 ~~~~~~~adi~v~ps~--~e~~~--~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
-..++..||++|.-.- +..+. .-.--|.|+|+|.|+-.......-+ ++-+.....-..+++...+.+..++
T Consensus 66 T~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpL---KEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPL---KEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccH---HHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 4578999999886431 22222 2233478999999987766665555 4433333333447777777776654
No 205
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=89.37 E-value=14 Score=32.37 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=66.9
Q ss_pred HhCCCceEEEEecCccHHHHHHhhcCC---CEEEccc----cCchhHH----HHHhcCCEEEecc--CCcccchHHHHHH
Q 017114 197 DRLPEARIAFIGDGPYREELEKMFTGM---PAVFTGM----LLGEELS----QAYASGDVFVMPS--ESETLGLVVLEAM 263 (377)
Q Consensus 197 ~~l~~~~l~i~G~g~~~~~l~~~~~~~---~v~~~g~----~~~~~~~----~~~~~adi~v~ps--~~e~~~~~~~Ea~ 263 (377)
..+.+-++.++|.|...+...+...+. +|.+... .+.+++. .+...+|+++..+ ..-+.|....|.+
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~ 249 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESL 249 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHH
Confidence 334566788888776655444433322 2333222 2334433 6678999999863 3344565555655
Q ss_pred hcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017114 264 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 343 (377)
Q Consensus 264 a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly 343 (377)
..-.+-+.-|..-.+++-+ .....+..++ |.++|.+.+.+ |...+++....+...+ +..+.++. +.|
T Consensus 250 ~~~~~r~~iDLAvPRdId~-v~~~~~v~Ly---~iDdL~~i~~~---n~~~R~~~~~~ae~iI-----~~~~~~~~-~~~ 316 (338)
T PRK00676 250 ADIPDRIVFDFNVPRTFPW-SETPFPHRYL---DMDFISEWVQK---HLQCRKEVNNKHKLSL-----REAAYKQW-ESY 316 (338)
T ss_pred hhccCcEEEEecCCCCCcc-ccccCCcEEE---EhHHHHHHHHH---HHHHHHHHHHHHHHHH-----HHHHHHHH-HHH
Confidence 4322234445544433321 0223334455 55555555543 2233444444443333 34455555 456
Q ss_pred HHHH
Q 017114 344 NAAI 347 (377)
Q Consensus 344 ~~~~ 347 (377)
++=.
T Consensus 317 ~~~~ 320 (338)
T PRK00676 317 EKKL 320 (338)
T ss_pred HHHH
Confidence 5533
No 206
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=87.36 E-value=4.2 Score=31.18 Aligned_cols=85 Identities=15% Similarity=0.038 Sum_probs=50.4
Q ss_pred HHHHHhcCCCEEEeCCCchh-HHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChh
Q 017114 48 ISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 126 (377)
Q Consensus 48 ~~~i~~~~pDii~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 126 (377)
.+......+|+|++.+.-.. .+.++ .....++|.++.+|+....+........ ..-+....-...-.||.|++.|..
T Consensus 52 ~~~~~~~~~dll~aTsmldLa~l~gL-~p~l~~~p~ilYFHENQl~YP~~~~~~r-d~~~~~~ni~saLaAD~v~FNS~~ 129 (168)
T PF12038_consen 52 QQIPLSHSYDLLFATSMLDLATLRGL-RPDLANVPKILYFHENQLAYPVSPGQER-DFQYGMNNIYSALAADRVVFNSAF 129 (168)
T ss_pred hccccccCCCEEEeeccccHHHHHhh-ccCCCCCCEEEEEecCcccCCCCCCccc-cccHHHHHHHHHHhceeeeecchh
Confidence 55566678899999885322 22222 2244678999999985433322111110 011122333445579999999999
Q ss_pred HHHHHHHh
Q 017114 127 IGKDLEAA 134 (377)
Q Consensus 127 ~~~~~~~~ 134 (377)
-.+.|.+.
T Consensus 130 nr~sFL~~ 137 (168)
T PF12038_consen 130 NRDSFLDG 137 (168)
T ss_pred hHHHHHHH
Confidence 88877554
No 207
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=86.99 E-value=3.5 Score=36.56 Aligned_cols=81 Identities=9% Similarity=-0.028 Sum_probs=51.4
Q ss_pred hhHHHHHhcCCEEEeccC--Ccc-cchHHHHHHhcCCCeEEec--CCCCCccccccCCCCeeEEe-CCCCHHHHHHHHHH
Q 017114 234 EELSQAYASGDVFVMPSE--SET-LGLVVLEAMSSGIPVVGVR--AGGIPDIIPEDQDGKIGYLF-NPGDLDDCLSKLEP 307 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~--~e~-~~~~~~Ea~a~G~PvI~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~i~~ 307 (377)
++...+++...+.+..-. .++ ..-++.+|+..|+-.|... .+...+++ -. +.-+-+ +..++++|++.|..
T Consensus 219 ~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~---P~-~SfI~~~df~s~~~La~yl~~ 294 (349)
T PF00852_consen 219 DCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFA---PP-NSFIHVDDFKSPKELADYLKY 294 (349)
T ss_dssp S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS----G-GGSEEGGGSSSHHHHHHHHHH
T ss_pred ccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCC---CC-CCccchhcCCCHHHHHHHHHH
Confidence 457788888888887533 233 3568999999997655554 55666666 22 222333 34589999999999
Q ss_pred HhhCHHHHHHH
Q 017114 308 LLYNQELRETM 318 (377)
Q Consensus 308 ~~~~~~~~~~~ 318 (377)
+.+|++.+.+.
T Consensus 295 l~~n~~~Y~~y 305 (349)
T PF00852_consen 295 LDKNDELYNKY 305 (349)
T ss_dssp HHT-HHHHH--
T ss_pred HhcCHHHHhhh
Confidence 99998877653
No 208
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=84.69 E-value=13 Score=32.98 Aligned_cols=128 Identities=12% Similarity=-0.022 Sum_probs=80.8
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEec--c
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP--S 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~p--s 250 (377)
.+....++.+..+...-..+++.+.+. +++.++|..--. .....+..++.+.++...++|.- |
T Consensus 196 ~~~~aw~vSnc~~~~~R~~~~~~L~k~--l~iD~YG~c~~~-------------~~~~~~~~~~~~~~s~YKFyLAfENS 260 (372)
T KOG2619|consen 196 TKLAAWLVSNCIPRSARLDYYKELMKH--LEIDSYGECLRK-------------NANRDPSDCLLETLSHYKFYLAFENS 260 (372)
T ss_pred cceeeeeccccCcchHHHHHHHHHHhh--Cceeeccccccc-------------cccCCCCCcceeecccceEEEEeccc
Confidence 344556666777766656666655543 788888853210 11123335666777788887764 2
Q ss_pred CCc-ccchHHHHHHhcC-CCeEEecCCCCCccccccCCCCeeEEe-CCCCHHHHHHHHHHHhhCHHHHHHHHH
Q 017114 251 ESE-TLGLVVLEAMSSG-IPVVGVRAGGIPDIIPEDQDGKIGYLF-NPGDLDDCLSKLEPLLYNQELRETMGQ 320 (377)
Q Consensus 251 ~~e-~~~~~~~Ea~a~G-~PvI~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~i~~~~~~~~~~~~~~~ 320 (377)
..+ -..-++.-|+-+| +|||... +...+++ - .+.-+.+ +..++++|++-|+++-+|+..+.+.-+
T Consensus 261 ~c~DYVTEKfw~al~~gsVPVvlg~-~n~e~fv---P-~~SfI~vdDF~s~~ela~ylk~L~~n~~~Y~~Yf~ 328 (372)
T KOG2619|consen 261 NCEDYVTEKFWNALDAGSVPVVLGP-PNYENFV---P-PDSFIHVDDFQSPQELAAYLKKLDKNPAAYLSYFE 328 (372)
T ss_pred CCcccccHHHHhhhhcCcccEEECC-ccccccC---C-CcceEehhhcCCHHHHHHHHHHhhcCHHHHHHHHH
Confidence 222 3366788888888 5666555 6677776 2 2233333 456899999999999999887766533
No 209
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=84.24 E-value=13 Score=32.91 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCC-CceEEEEecCccHHHHHHhhc-------------CCCEEEccccCchhHHHHHhcCCEEEeccCCcc
Q 017114 189 LDFLKRVMDRLP-EARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELSQAYASGDVFVMPSESET 254 (377)
Q Consensus 189 ~~~l~~a~~~l~-~~~l~i~G~g~~~~~l~~~~~-------------~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~ 254 (377)
+..++++++..+ .+.+.+.+ |.....+..... ...+.+++++++++..+++-.||+-++-.-
T Consensus 197 l~~ll~~~~~~~~pv~llvp~-g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGE--- 272 (374)
T PF10093_consen 197 LASLLDAWAASPKPVHLLVPE-GRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRGE--- 272 (374)
T ss_pred HHHHHHHHhcCCCCeEEEecC-CccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEecc---
Confidence 788899988775 45555554 444455533332 114889999999999999999999775432
Q ss_pred cchHHHHHHhcCCCeE
Q 017114 255 LGLVVLEAMSSGIPVV 270 (377)
Q Consensus 255 ~~~~~~Ea~a~G~PvI 270 (377)
-++.-|.-+|+|.|
T Consensus 273 --DSfVRAqwAgkPFv 286 (374)
T PF10093_consen 273 --DSFVRAQWAGKPFV 286 (374)
T ss_pred --hHHHHHHHhCCCce
Confidence 47889999999998
No 210
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=83.67 E-value=6.7 Score=36.32 Aligned_cols=85 Identities=13% Similarity=0.184 Sum_probs=56.1
Q ss_pred hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCC-CeEEecCC--CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 234 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGI-PVVGVRAG--GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~-PvI~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
....+.|..|.+++.|.-.+...-.++||+..|| |||.++.- ...+.+ +-...++.++..+...+ +.+++.
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~---d~~~fSV~v~~~~v~~~---~~~iL~ 408 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVL---DWTEFSVFVPEKDVPEL---IKNILL 408 (464)
T ss_pred chHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCc---cceEEEEEEEHHHhhhH---HHHHHH
Confidence 5788899999999999988888889999999995 89988753 334444 33445556653344444 344443
Q ss_pred --CHHHHHHHHHHHHH
Q 017114 311 --NQELRETMGQAARQ 324 (377)
Q Consensus 311 --~~~~~~~~~~~~~~ 324 (377)
..+.+..|.++-..
T Consensus 409 ~i~~~~~~~m~~~v~~ 424 (464)
T KOG1021|consen 409 SIPEEEVLRMRENVIR 424 (464)
T ss_pred hcCHHHHHHHHHHHHH
Confidence 23334555555443
No 211
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.62 E-value=24 Score=28.48 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=49.9
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcc
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 280 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~ 280 (377)
+.+++++.. ...+.+.++.....+.+.... -....+..+|+++..+..+.....+.+....|.+|-+.+.+...++
T Consensus 33 ga~V~VIs~-~~~~~l~~l~~~~~i~~~~~~---~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f 108 (202)
T PRK06718 33 GAHIVVISP-ELTENLVKLVEEGKIRWKQKE---FEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGNV 108 (202)
T ss_pred CCeEEEEcC-CCCHHHHHHHhCCCEEEEecC---CChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeE
Confidence 567777764 334455666655556654332 1234567899988887766667777777788888887777655554
Q ss_pred c
Q 017114 281 I 281 (377)
Q Consensus 281 ~ 281 (377)
+
T Consensus 109 ~ 109 (202)
T PRK06718 109 V 109 (202)
T ss_pred E
Confidence 4
No 212
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=80.93 E-value=29 Score=28.38 Aligned_cols=102 Identities=22% Similarity=0.397 Sum_probs=62.8
Q ss_pred EEEeecccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC-
Q 017114 177 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE- 251 (377)
Q Consensus 177 i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~- 251 (377)
|+=.|+++...-++++++-...-.++...++|+|.- .+..... ....+. .-|++++.|-
T Consensus 7 iiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~----------------~~~~~~~~~pDf~i~isPN 70 (277)
T PRK00994 7 IIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEV----------------VKKMLEEWKPDFVIVISPN 70 (277)
T ss_pred EEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHH----------------HHHHHHhhCCCEEEEECCC
Confidence 556788877777888877666667899999998752 1111110 111111 3466665443
Q ss_pred -CcccchHHHHHHh-cCCCeEE-ecCCCCC--ccccccCCCCeeEEeCCCC
Q 017114 252 -SETLGLVVLEAMS-SGIPVVG-VRAGGIP--DIIPEDQDGKIGYLFNPGD 297 (377)
Q Consensus 252 -~e~~~~~~~Ea~a-~G~PvI~-~~~~~~~--~~~~~~~~~~~g~~~~~~~ 297 (377)
.-+.|.+.-|.+. .|+|+|. +|.++.. +-+ ++.+.|+++-..|
T Consensus 71 ~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l---~~~g~GYIivk~D 118 (277)
T PRK00994 71 PAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAM---EEQGLGYIIVKAD 118 (277)
T ss_pred CCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHH---HhcCCcEEEEecC
Confidence 4566788888885 6899875 4555442 444 5666777765444
No 213
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=77.91 E-value=21 Score=32.32 Aligned_cols=89 Identities=10% Similarity=-0.043 Sum_probs=59.8
Q ss_pred ccchHHHHHHhcCCCeEEecCCC---CCccccccCCCCeeEEeCC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-h
Q 017114 254 TLGLVVLEAMSSGIPVVGVRAGG---IPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQAARQEME-K 328 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~~~~~---~~~~~~~~~~~~~g~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~ 328 (377)
+++..+---|+||-.|+..+... ..+.+ .....-+-+.. ++.++|.++|+.+.++++..++++++|+++++ .
T Consensus 225 ~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L---~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~ 301 (395)
T PF05686_consen 225 AWSGRLKYLLACNSVVLKVKSPYYEFFYRAL---KPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAREY 301 (395)
T ss_pred eeehhHHHHHcCCceEEEeCCcHHHHHHhhh---cccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHHH
Confidence 45566666788888888654321 12222 23333333333 47899999999999999999999999999984 6
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 017114 329 YDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 329 ~s~~~~~~~~~~~ly~~~ 346 (377)
.+.+.+..-+. .+.++-
T Consensus 302 L~~~~~~~Y~~-~LL~eY 318 (395)
T PF05686_consen 302 LTMEDVYCYWR-RLLLEY 318 (395)
T ss_pred hhhhHHHHHHH-HHHHHH
Confidence 77777766555 454443
No 214
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.65 E-value=7.2 Score=33.19 Aligned_cols=198 Identities=15% Similarity=0.143 Sum_probs=102.9
Q ss_pred HHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecc--cccc
Q 017114 110 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL--GVEK 187 (377)
Q Consensus 110 ~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~--~~~k 187 (377)
.-..-++|-.++.-.....+.+.+.+. +...+.|+. .+-..|...+.+.. ......+-+..|+- ....
T Consensus 172 wlm~~rrc~~vf~rD~~Taq~L~~rgv----na~~vGnpm-mD~L~p~~~~~q~l-----~~g~~viaLLPGsR~pea~~ 241 (412)
T COG4370 172 WLMLRRRCWAVFPRDALTAQHLANRGV----NAAYVGNPM-MDGLPPPERDPQLL-----LTGVPVIALLPGSRVPEAQT 241 (412)
T ss_pred HHHhcccceeeeccccccHHHHHhcCC----chhhccChh-hccCCCccCCchhh-----ccCCceEEecCCCCChHHHh
Confidence 334456788888888888888887764 334444443 22233322221111 11222334456644 3356
Q ss_pred cHHHHHHHHHhCCC-ceE-EEEe---cCccHHHHHHh------------hcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 188 SLDFLKRVMDRLPE-ARI-AFIG---DGPYREELEKM------------FTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 188 ~~~~l~~a~~~l~~-~~l-~i~G---~g~~~~~l~~~------------~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
++..++.++-.+++ ... ++.+ ++-....+..+ ..++|.. -+++.....+++..+|+.+-
T Consensus 242 nl~~il~slcal~~~~a~vvfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~--l~lsqqsfadiLH~adaalg-- 317 (412)
T COG4370 242 NLAVILGSLCALPAMFALVVFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCS--LWLSQQSFADILHAADAALG-- 317 (412)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHhccCcCCCHHHHHHHHHhcCcchhhhhhccCceE--EEEeHHHHHHHHHHHHHHHH--
Confidence 77777776555432 111 2222 11111111111 1122211 23445677788888888652
Q ss_pred CCcccchHHHHHHhcCCCeEEecCCCCCc---cccccCC---CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVRAGGIPD---IIPEDQD---GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 324 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~---~~~~~~~---~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 324 (377)
--|+..-.+...|+|||....-+... +. +.+. +..-.++.+ .+++-....++++.|++..+.++.++++
T Consensus 318 ---mAGTAtEQavGLGkPvi~fPg~GPQy~pgFA-~rQ~rLLG~sltlv~~-~aq~a~~~~q~ll~dp~r~~air~nGqr 392 (412)
T COG4370 318 ---MAGTATEQAVGLGKPVIGFPGQGPQYNPGFA-ERQQRLLGASLTLVRP-EAQAAAQAVQELLGDPQRLTAIRHNGQR 392 (412)
T ss_pred ---hccchHHHhhccCCceeecCCCCCCcChHHH-HHHHHHhcceeeecCC-chhhHHHHHHHHhcChHHHHHHHhcchh
Confidence 22667778899999999876433211 11 0000 222233332 4444455555599999999999989888
Q ss_pred HH
Q 017114 325 EM 326 (377)
Q Consensus 325 ~~ 326 (377)
.+
T Consensus 393 Ri 394 (412)
T COG4370 393 RI 394 (412)
T ss_pred hc
Confidence 76
No 215
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=75.69 E-value=40 Score=29.85 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHhCC-CceEEEEecCccHHHHHHhhc-------------CCCEEEccccCchhHHHHHhcCCEEEeccCC
Q 017114 187 KSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELSQAYASGDVFVMPSES 252 (377)
Q Consensus 187 k~~~~l~~a~~~l~-~~~l~i~G~g~~~~~l~~~~~-------------~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~ 252 (377)
-.+..++++++... .+.+.+ -.|.....+..... ...+.+++++++++..+++-.||+-++-.
T Consensus 193 ~al~~ll~~~~~~~~pv~lLv-p~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRG-- 269 (371)
T TIGR03837 193 AALPALLDALAQSGSPVHLLV-PEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNFVRG-- 269 (371)
T ss_pred hhHHHHHHHHHhCCCCeEEEe-cCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChhcEeec--
Confidence 34888999998764 444444 34444444444331 12488999999999999999999976543
Q ss_pred cccchHHHHHHhcCCCeE
Q 017114 253 ETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI 270 (377)
=-+++-|.-+|+|.|
T Consensus 270 ---EDSFVRAqWAgkPfv 284 (371)
T TIGR03837 270 ---EDSFVRAQWAGKPFV 284 (371)
T ss_pred ---hhHHHHHHHcCCCce
Confidence 247899999999998
No 216
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=75.29 E-value=27 Score=24.97 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=53.1
Q ss_pred EEEeecccccccHHHHHHHHHhC-CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCCc
Q 017114 177 IVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESE 253 (377)
Q Consensus 177 i~~~G~~~~~k~~~~l~~a~~~l-~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~e 253 (377)
++.+|.-.. | ...+.++... ++++++-+-+ +..+..+...+..++. .+ .++.++++ ..|+++..+...
T Consensus 3 v~iiG~G~~--g-~~~~~~~~~~~~~~~v~~v~d-~~~~~~~~~~~~~~~~--~~---~~~~~ll~~~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 3 VGIIGAGSI--G-RRHLRALLRSSPDFEVVAVCD-PDPERAEAFAEKYGIP--VY---TDLEELLADEDVDAVIIATPPS 73 (120)
T ss_dssp EEEESTSHH--H-HHHHHHHHHTTTTEEEEEEEC-SSHHHHHHHHHHTTSE--EE---SSHHHHHHHTTESEEEEESSGG
T ss_pred EEEECCcHH--H-HHHHHHHHhcCCCcEEEEEEe-CCHHHHHHHHHHhccc--ch---hHHHHHHHhhcCCEEEEecCCc
Confidence 555664221 2 3334455555 6776653322 2344444444444554 22 45666776 688888888777
Q ss_pred ccchHHHHHHhcCCCeEEe
Q 017114 254 TLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~ 272 (377)
.....+.+++..|++|++-
T Consensus 74 ~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 74 SHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp GHHHHHHHHHHTTSEEEEE
T ss_pred chHHHHHHHHHcCCEEEEE
Confidence 7778899999999999864
No 217
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=75.24 E-value=12 Score=34.31 Aligned_cols=112 Identities=28% Similarity=0.340 Sum_probs=67.8
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhcC--CEEEeccC-CcccchHHHHHHhc---CCCeEE-ecC
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASG--DVFVMPSE-SETLGLVVLEAMSS---GIPVVG-VRA 274 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~a--di~v~ps~-~e~~~~~~~Ea~a~---G~PvI~-~~~ 274 (377)
.+.++-+.. ....+.......+......-+.++....+... |++++-.+ .+.-|..+++.+.. ++|||. |..
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~ 85 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGH 85 (464)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCC
Confidence 355555443 23334444444333333333335666666665 55555433 34556777776655 689874 556
Q ss_pred CCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHH
Q 017114 275 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 314 (377)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~ 314 (377)
+.+...+...+.|-..++..|.+++.+...+.+.+.....
T Consensus 86 g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred CCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 6655444333667778899999999999999999886543
No 218
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=75.10 E-value=47 Score=28.12 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=58.3
Q ss_pred hhHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh--
Q 017114 234 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-- 310 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-- 310 (377)
..-..-++.||++|.-.. .|++=.++++.. .+.+++....++..+ - ...+..+..+|.+...+++.|.+.+.
T Consensus 44 p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~-~---~~~dPH~Wldp~n~~~~a~~I~~~L~~~ 118 (264)
T cd01020 44 PTDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHDD-K---EGDNPHLWYDPETMSKVANALADALVKA 118 (264)
T ss_pred HHHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeecccccC-C---CCCCCceecCHhHHHHHHHHHHHHHHHh
Confidence 345567889999987653 466666677655 455666554433211 1 12345577788888888888888876
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 017114 311 NQELRETMGQAARQEMEK 328 (377)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~ 328 (377)
||+......+++.++.++
T Consensus 119 dP~~~~~y~~N~~~~~~~ 136 (264)
T cd01020 119 DPDNKKYYQANAKKFVAS 136 (264)
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 777777777777766544
No 219
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=73.97 E-value=16 Score=25.81 Aligned_cols=75 Identities=8% Similarity=0.170 Sum_probs=52.1
Q ss_pred cHHHHHHHHHhCCCceEEEEecC---ccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH
Q 017114 188 SLDFLKRVMDRLPEARIAFIGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 263 (377)
Q Consensus 188 ~~~~l~~a~~~l~~~~l~i~G~g---~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 263 (377)
|.+.++++++.- ++.++|+... ...+.+..++...+|.+..+.+.+|+-..+....+.++.-..+++...+++.+
T Consensus 21 G~~~v~~aik~g-k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~~~~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 21 GYNKCEEAIKKK-KVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILGVKDKNMAKKLLKLW 98 (104)
T ss_pred cHHHHHHHHHcC-CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCCeEEEEEeChHHHHHHHHHH
Confidence 567778887763 6788887633 24556666666566666666677899988888776666666677777777765
No 220
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=73.90 E-value=72 Score=29.16 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=53.6
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCC-EEEccccCchhHHHHHhcCCEEEeccCC
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYASGDVFVMPSES 252 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~-v~~~g~~~~~~~~~~~~~adi~v~ps~~ 252 (377)
...++.+|.-.- -..+...+....--.+.++.... +..+.++...+ .. ..+.+++...+..+|+++..+..
T Consensus 181 ~kkvlviGaG~~---a~~va~~L~~~g~~~I~V~nRt~--~ra~~La~~~~~~~---~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 181 SKNVLIIGAGQT---GELLFRHVTALAPKQIMLANRTI--EKAQKITSAFRNAS---AHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred CCEEEEEcCcHH---HHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHhcCCe---EecHHHHHHHhccCCEEEECcCC
Confidence 345666665222 24455555544224677776542 23344443322 22 23447889999999999987643
Q ss_pred cccchHHHHHHhcCCCeEEecCCCCCccc
Q 017114 253 ETLGLVVLEAMSSGIPVVGVRAGGIPDII 281 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~ 281 (377)
... ..-. .+.-+.|.+.-|.+-.+++-
T Consensus 253 ~~~-vi~~-~~~~~~~~~~iDLavPRdid 279 (414)
T PRK13940 253 LEY-IVTC-KYVGDKPRVFIDISIPQALD 279 (414)
T ss_pred CCe-eECH-HHhCCCCeEEEEeCCCCCCC
Confidence 221 1112 23357888888876555543
No 221
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=73.05 E-value=38 Score=28.86 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCC-ceEEEEecCccHHHHHHh-hc--CCCEEEccccCchh-HHHHHhc-CCEEEe
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPE-ARIAFIGDGPYREELEKM-FT--GMPAVFTGMLLGEE-LSQAYAS-GDVFVM 248 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~-~~l~i~G~g~~~~~l~~~-~~--~~~v~~~g~~~~~~-~~~~~~~-adi~v~ 248 (377)
..+++++.-.+.+.++.+++.++.-|+ +.+-..|.|......... .+ ...+.+.++-...+ +..++.. .|+.+.
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak~~p~~~~~g~~g~g~~~hl~~~~l~~~~G~~~~~Vpy~G~~~~~~allgG~vd~~~~ 158 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAKANPGKLTFGSSGPGSSDHLAAALLAKAAGIKFTHVPYDGGAEALTALLGGHVDAAFG 158 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHHCSCCC-EEEESSTTSHHHHHHHHHHHHHT---EEEE-SSHHHHHHHHHTTSSSEEEE
T ss_pred ceEEEEeCCCccccHHHHHHHHHhCCCCeEEEecCCCchHHHHHHHHHHHhCCceEEEEeCCccHHHHHHhCCeeeEEee
Confidence 456777777889999999999998764 455445544432222111 11 22344444433333 3444433 566553
Q ss_pred ccCCcccchHHHHHHhcCCC-eEE-ec---C---CCCCcccccc-----CCCCeeEEeCCCCHHH----HHHHHHHHhhC
Q 017114 249 PSESETLGLVVLEAMSSGIP-VVG-VR---A---GGIPDIIPED-----QDGKIGYLFNPGDLDD----CLSKLEPLLYN 311 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~P-vI~-~~---~---~~~~~~~~~~-----~~~~~g~~~~~~~~~~----l~~~i~~~~~~ 311 (377)
. ......++..|.- +|+ +. . +..+.+-+.. ...-.|++.+.+.+++ |.+++.++++|
T Consensus 159 ~------~~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp~~~~~~l~~a~~~~~~~ 232 (274)
T PF03401_consen 159 S------PGEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTPDEIVDKLADAIKKALED 232 (274)
T ss_dssp E------HHHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-HHHHHHHHHHHHHHHT-
T ss_pred c------HHHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCCHHHHHHHHHHHHHHhCC
Confidence 2 2345566666642 222 11 1 1111111000 1223477777777665 55555666668
Q ss_pred HHHHHHHHHHH
Q 017114 312 QELRETMGQAA 322 (377)
Q Consensus 312 ~~~~~~~~~~~ 322 (377)
++..+.+.+.+
T Consensus 233 pe~~~~~~~~g 243 (274)
T PF03401_consen 233 PEFQEFLEKMG 243 (274)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
Confidence 87766555443
No 222
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=72.26 E-value=10 Score=31.55 Aligned_cols=21 Identities=19% Similarity=0.645 Sum_probs=16.1
Q ss_pred hHHHHHHHHhcCCCEEEeCCC
Q 017114 44 SPRIISEVARFKPDIIHASSP 64 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~ 64 (377)
...+..++++.+||+|+++.+
T Consensus 98 ~~~L~~ii~~~~P~~V~t~~~ 118 (237)
T COG2120 98 TGALVAIIRRLRPDVVFTPYP 118 (237)
T ss_pred HHHHHHHHHHhCCCEEEecCC
Confidence 346888888999998887653
No 223
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=70.44 E-value=16 Score=22.68 Aligned_cols=58 Identities=28% Similarity=0.379 Sum_probs=37.1
Q ss_pred EEEEe-cCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 204 IAFIG-DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 204 l~i~G-~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
+.+.| .+.+.+.+.+++...+-.+.+.+.. ....+|. .+..+.+.-.|...|+|||..
T Consensus 3 i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~--------~~THLI~---~~~~~~K~~~A~~~gi~vV~~ 61 (63)
T PF12738_consen 3 ICFSGFSGKERSQLRKLIEALGGKYSKDLTK--------KTTHLIC---SSPEGKKYRKAKEWGIPVVSP 61 (63)
T ss_dssp EEEEEB-TTTCCHHHHHHHCTT-EEESSSST--------T-SEEEE---ES--HHHHHHHHHCTSEEEEH
T ss_pred EEECCCCHHHHHHHHHHHHHCCCEEeccccC--------CceEEEE---eCCCcHHHHHHHHCCCcEECC
Confidence 44555 4455777888887777666666632 4455554 345688999999999999965
No 224
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=69.73 E-value=14 Score=31.14 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=46.2
Q ss_pred HHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 192 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 192 l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
+++++...++++++-+-+.... ..... ... |....+++.+++..+|+++..+..+...-.+..|+..|+|+|+
T Consensus 17 i~~~l~~~~~~elvav~d~~~~-~~~~~-~~~-----~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvi 89 (257)
T PRK00048 17 LIEAVEAAEDLELVAAVDRPGS-PLVGQ-GAL-----GVAITDDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVI 89 (257)
T ss_pred HHHHHHhCCCCEEEEEEecCCc-ccccc-CCC-----CccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEE
Confidence 4466666677776654432111 11111 111 2223356777777899999766655556677889999999997
Q ss_pred ecCC
Q 017114 272 VRAG 275 (377)
Q Consensus 272 ~~~~ 275 (377)
...+
T Consensus 90 gttG 93 (257)
T PRK00048 90 GTTG 93 (257)
T ss_pred ECCC
Confidence 6544
No 225
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=69.59 E-value=19 Score=25.22 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=41.0
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHH-HHHhcCCCeEEecCCCCCc
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~PvI~~~~~~~~~ 279 (377)
+.++.++.... +..+ ..+.+.. .++...+..+|+++.....+.....+. ++-+.|+||-+.+.+...+
T Consensus 30 gA~v~vis~~~--~~~~-----~~i~~~~----~~~~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~~~d 98 (103)
T PF13241_consen 30 GAKVTVISPEI--EFSE-----GLIQLIR----REFEEDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPELCD 98 (103)
T ss_dssp TBEEEEEESSE--HHHH-----TSCEEEE----SS-GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CCCCS
T ss_pred CCEEEEECCch--hhhh-----hHHHHHh----hhHHHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcCCCe
Confidence 68888888654 2222 2333322 223345778888887765555544444 4445899999999888777
Q ss_pred cc
Q 017114 280 II 281 (377)
Q Consensus 280 ~~ 281 (377)
++
T Consensus 99 F~ 100 (103)
T PF13241_consen 99 FI 100 (103)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 226
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.43 E-value=45 Score=28.33 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=51.5
Q ss_pred cHHHHHHHHHhCCCceEEEEecCccHHHHHHhhc-------------CCCEEEccccCchhHHHHHhcCCEEEeccCCcc
Q 017114 188 SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELSQAYASGDVFVMPSESET 254 (377)
Q Consensus 188 ~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~-------------~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~ 254 (377)
.+...++-++....--+.++-.|.....+.+... ..++..++++|+++..+++-.||+-++-.
T Consensus 190 a~~s~ieq~r~a~~p~llL~~e~~~~~~~~~~~~~~~~a~Gdv~~~~~lrvvklPFvpqddyd~LL~lcD~n~VRG---- 265 (370)
T COG4394 190 ALPSWIEQLRKADKPILLLIPEGKTQANFAKYFDNNNNADGDVFQTAKLRVVKLPFVPQDDYDELLWLCDFNLVRG---- 265 (370)
T ss_pred chHHHHHHHHhcCCCEEEEcccchHHHHHHHHcCCCcccccchhcccceEEEEecCCcHhHHHHHHHhcccceeec----
Confidence 4566666666663322333333333333333322 12477899999999999999999977543
Q ss_pred cchHHHHHHhcCCCeEE
Q 017114 255 LGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 255 ~~~~~~Ea~a~G~PvI~ 271 (377)
--+..-|..+|+|.+=
T Consensus 266 -EDSFVRAq~agkPflW 281 (370)
T COG4394 266 -EDSFVRAQLAGKPFLW 281 (370)
T ss_pred -chHHHHHHHcCCCcEE
Confidence 2478899999999883
No 227
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=69.03 E-value=43 Score=30.02 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=58.0
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCE-EEccccCchhHHHHHhc--CCEEEec
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYAS--GDVFVMP 249 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v-~~~g~~~~~~~~~~~~~--adi~v~p 249 (377)
+++.++.+.. .++.+.+.+..+.+. .+.+.+++....+.++......++ .+.|. +.+.++.+. +|+++..
T Consensus 26 ~~f~VvaLaa---~~n~~~l~~q~~~f~-p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~---~~~~~l~~~~~vD~Vv~A 98 (385)
T PRK05447 26 DRFRVVALSA---GKNVELLAEQAREFR-PKYVVVADEEAAKELKEALAAAGIEVLAGE---EGLCELAALPEADVVVAA 98 (385)
T ss_pred cccEEEEEEc---CCCHHHHHHHHHHhC-CCEEEEcCHHHHHHHHHhhccCCceEEECh---hHHHHHhcCCCCCEEEEe
Confidence 3444444432 567788888777773 356666665555556554433233 23343 567777765 5888876
Q ss_pred cCCcccchHHHHHHhcCCCeEEec
Q 017114 250 SESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
......-...++|+.+|++|.+.+
T Consensus 99 i~G~aGl~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 99 IVGAAGLLPTLAAIRAGKRIALAN 122 (385)
T ss_pred CcCcccHHHHHHHHHCCCcEEEeC
Confidence 654322356889999999999855
No 228
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=68.56 E-value=71 Score=26.92 Aligned_cols=89 Identities=4% Similarity=-0.046 Sum_probs=58.6
Q ss_pred cccchHHHHHHhcCCCeEEecCCC---CCccccccCCCCeeEEeCC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 017114 253 ETLGLVVLEAMSSGIPVVGVRAGG---IPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 328 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~~~~~---~~~~~~~~~~~~~g~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 328 (377)
.+++..+.=-|+|+-.|+.....- ..+.+ .....-+-+.. .+.++|.++|..+.++++..+++++++++++++
T Consensus 155 ~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L---~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~ 231 (256)
T smart00672 155 VAWSVRLKYILACDSVVLKVKPEYYEFFSRGL---QPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQ 231 (256)
T ss_pred ccchhhHHHHHhcCceEEEeCCchhHHHHhcc---cCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 456667777889998888765321 22223 22222222222 122449999999999999999999999999864
Q ss_pred -cCHHHHHHHHHHHHHHH
Q 017114 329 -YDWRAATRTIRNEQYNA 345 (377)
Q Consensus 329 -~s~~~~~~~~~~~ly~~ 345 (377)
.+.+.+..-+. .+.++
T Consensus 232 ~L~~~~~~~Y~~-~ll~e 248 (256)
T smart00672 232 NLSMEDVYDYMF-HLLQE 248 (256)
T ss_pred HcCHHHHHHHHH-HHHHH
Confidence 78877776665 45444
No 229
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=66.76 E-value=71 Score=26.24 Aligned_cols=77 Identities=6% Similarity=-0.035 Sum_probs=47.1
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHH-HhcCCCeEEecCCCCCc
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA-MSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea-~a~G~PvI~~~~~~~~~ 279 (377)
+.+++++... ..+++..+....++.+...-- + ...+..+++++..+..+.....+.+. -+.|.+|.+.+.+...+
T Consensus 48 gA~VtVVap~-i~~el~~l~~~~~i~~~~r~~-~--~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~d 123 (223)
T PRK05562 48 GCYVYILSKK-FSKEFLDLKKYGNLKLIKGNY-D--KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGL 123 (223)
T ss_pred CCEEEEEcCC-CCHHHHHHHhCCCEEEEeCCC-C--hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCe
Confidence 6788888743 334556666655666654321 1 23456788887776655555555544 46699998887665555
Q ss_pred cc
Q 017114 280 II 281 (377)
Q Consensus 280 ~~ 281 (377)
++
T Consensus 124 Fi 125 (223)
T PRK05562 124 CI 125 (223)
T ss_pred EE
Confidence 44
No 230
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=66.75 E-value=28 Score=28.79 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCEEEeCCCchhHHHHHHHHHhhCCCEEEEecc
Q 017114 56 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 88 (377)
Q Consensus 56 pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 88 (377)
||++++.++..-.. +..-|+..|+|+|..+..
T Consensus 157 Pd~l~ViDp~~e~i-Av~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKI-AVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHH-HHHHHHHcCCCEEEEecC
Confidence 99999999765443 456888999999876654
No 231
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=66.67 E-value=66 Score=25.80 Aligned_cols=115 Identities=19% Similarity=0.345 Sum_probs=67.0
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEe--ccC
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM--PSE 251 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~--ps~ 251 (377)
-++-.|+++...-++++++-...-+++.+.++|+|.- .+.+.... .++.+-+ ..|++++ |..
T Consensus 6 g~ik~GniGts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav-------------~~~~e~~-~pDfvi~isPNp 71 (277)
T COG1927 6 GFIKCGNIGTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAV-------------TEMLEEF-NPDFVIYISPNP 71 (277)
T ss_pred EEEEecccchHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHH-------------HHHHHhc-CCCEEEEeCCCC
Confidence 3566788877667777777666668999999998741 11111110 1221111 3466655 444
Q ss_pred CcccchHHHHHHh-cCCCeEE-ecCCCC--CccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 252 SETLGLVVLEAMS-SGIPVVG-VRAGGI--PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 252 ~e~~~~~~~Ea~a-~G~PvI~-~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.-+.|.+.-|.++ +|.|+|. +|.++. .+-+ ++.+.|++.-..| .+.-+=++++
T Consensus 72 aaPGP~kARE~l~~s~~PaiiigDaPg~~vkdel---eeqGlGYIivk~D--pmiGArREFL 128 (277)
T COG1927 72 AAPGPKKAREILSDSDVPAIIIGDAPGLKVKDEL---EEQGLGYIIVKAD--PMIGARREFL 128 (277)
T ss_pred CCCCchHHHHHHhhcCCCEEEecCCccchhHHHH---HhcCCeEEEecCC--cccchhhhhc
Confidence 5567889999987 7899764 455543 3444 5566777665333 3444444443
No 232
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=66.37 E-value=42 Score=29.50 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=56.8
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEec-CccHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD-GPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 251 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~-g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~ 251 (377)
+.+..+|.- .-+-...+.++...++. +.+++- ....+..++.+++.++. ....++.++++. .|+++..+.
T Consensus 4 irvgiiG~G--~~~~~~~~~~~~~~~~~-~~~vav~d~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp 76 (342)
T COG0673 4 IRVGIIGAG--GIAGKAHLPALAALGGG-LELVAVVDRDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATP 76 (342)
T ss_pred eEEEEEccc--HHHHHHhHHHHHhCCCc-eEEEEEecCCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCC
Confidence 456666632 12234566777777663 334441 34455566666665554 223567777776 478888776
Q ss_pred CcccchHHHHHHhcCCCeEEe
Q 017114 252 SETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 252 ~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.....-.+..|+..|++|++-
T Consensus 77 ~~~H~e~~~~AL~aGkhVl~E 97 (342)
T COG0673 77 NALHAELALAALEAGKHVLCE 97 (342)
T ss_pred ChhhHHHHHHHHhcCCEEEEc
Confidence 555566679999999999964
No 233
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=66.05 E-value=12 Score=28.62 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=27.2
Q ss_pred HHHHHhc-CCEEEeccC------CcccchHHHHHHhcCCCeEEe
Q 017114 236 LSQAYAS-GDVFVMPSE------SETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 236 ~~~~~~~-adi~v~ps~------~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
+...+.. +|++|+.-. ..|+-..+.+|++.|+||++.
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 4444444 899887643 235667899999999999976
No 234
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=64.58 E-value=76 Score=25.79 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhh--cCCCEEEcccc-----------------CchhHHHHHhc-
Q 017114 187 KSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMF--TGMPAVFTGML-----------------LGEELSQAYAS- 242 (377)
Q Consensus 187 k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~--~~~~v~~~g~~-----------------~~~~~~~~~~~- 242 (377)
..+..+++-++.+ ...++.|+|.|.....+.+.. ...++.+.|++ +.+++.++++.
T Consensus 66 y~v~~l~~~~~~~l~~~~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~ 145 (213)
T PRK05472 66 YNVEELLEFIEKILGLDRTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKEN 145 (213)
T ss_pred eeHHHHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHC
Confidence 3455555555544 245677777666554443321 11222222221 22567777765
Q ss_pred -CCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 243 -GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 243 -adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.|.+++........-..-.+...|+..|.+-
T Consensus 146 ~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~ 177 (213)
T PRK05472 146 DIEIGILTVPAEAAQEVADRLVEAGIKGILNF 177 (213)
T ss_pred CCCEEEEeCCchhHHHHHHHHHHcCCCEEeec
Confidence 7887776543333333455667887666543
No 235
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=63.32 E-value=19 Score=27.73 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=48.1
Q ss_pred hHHHHHhcCCEEEeccC------CcccchHHHHHHhcCCCeEEecC-----CCCCccccccCCCCeeEE-eCCCCHHHHH
Q 017114 235 ELSQAYASGDVFVMPSE------SETLGLVVLEAMSSGIPVVGVRA-----GGIPDIIPEDQDGKIGYL-FNPGDLDDCL 302 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~------~e~~~~~~~Ea~a~G~PvI~~~~-----~~~~~~~~~~~~~~~g~~-~~~~~~~~l~ 302 (377)
.+...+..||+.+.--. ...|.-.+-|.|-+++|+|++-. +...++ .....-++ +++.|-+.+.
T Consensus 93 al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~i----k~~~~v~v~lt~~NR~~i~ 168 (179)
T COG1618 93 ALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRI----KKLGGVYVFLTPENRNRIL 168 (179)
T ss_pred HHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHh----hhcCCEEEEEccchhhHHH
Confidence 45667778899987432 33566678889999999998732 233333 23333344 6777878888
Q ss_pred HHHHHHhhC
Q 017114 303 SKLEPLLYN 311 (377)
Q Consensus 303 ~~i~~~~~~ 311 (377)
..|..++..
T Consensus 169 ~~Il~~L~~ 177 (179)
T COG1618 169 NEILSVLKG 177 (179)
T ss_pred HHHHHHhcc
Confidence 877776653
No 236
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=61.16 E-value=54 Score=26.54 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=46.4
Q ss_pred hhHHHHHh--cCCEEEeccC-CcccchHHHHHHh-----cCCCeEEe--cCCCCCccccccCCCCeeEEeCCCCHHHHHH
Q 017114 234 EELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV--RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 234 ~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
++...++. +.|+.++--+ .++-|+.++..+- +.+-+|+. +...+.+.+ ..|...+++.|...+.+.+
T Consensus 36 ~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~al---r~Gv~DYLiKPf~~eRl~~ 112 (224)
T COG4565 36 EEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEAL---RYGVVDYLIKPFTFERLQQ 112 (224)
T ss_pred HHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHH---hcCchhheecceeHHHHHH
Confidence 44444444 4466665433 5666777776665 33333322 333455555 5666778889999999999
Q ss_pred HHHHHhhC
Q 017114 304 KLEPLLYN 311 (377)
Q Consensus 304 ~i~~~~~~ 311 (377)
++.+....
T Consensus 113 aL~~y~~~ 120 (224)
T COG4565 113 ALTRYRQK 120 (224)
T ss_pred HHHHHHHH
Confidence 99887543
No 237
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=61.09 E-value=90 Score=26.83 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=63.6
Q ss_pred HHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHH
Q 017114 112 FLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD 190 (377)
Q Consensus 112 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~ 190 (377)
......|.|++........+.+... .. +-++-.|+ |+......... ..+++.+-+..- ..-+.
T Consensus 55 l~~~~~DlIi~~gt~aa~~~~~~~~--~~-iPVVf~~V~dp~~~~l~~~~---------~~~~~nvTGv~~----~~~~~ 118 (294)
T PF04392_consen 55 LKAQKPDLIIAIGTPAAQALAKHLK--DD-IPVVFCGVSDPVGAGLVDSL---------DRPGKNVTGVSE----RPPIE 118 (294)
T ss_dssp HCCTS-SEEEEESHHHHHHHHHH-S--S--S-EEEECES-TTTTTS-S-S---------SS--SSEEEEEE-------HH
T ss_pred HhcCCCCEEEEeCcHHHHHHHHhcC--CC-cEEEEEeccChhhhhccccc---------cCCCCCEEEEEC----CcCHH
Confidence 3445899999998877777777653 21 34455555 32211110000 111222222222 22344
Q ss_pred HHHHHHHhC-CCce-E-EEEecCc-----cHHHHHHhhcCCCEEEc--cccCchhHHHH----HhcCCEEEeccC---Cc
Q 017114 191 FLKRVMDRL-PEAR-I-AFIGDGP-----YREELEKMFTGMPAVFT--GMLLGEELSQA----YASGDVFVMPSE---SE 253 (377)
Q Consensus 191 ~l~~a~~~l-~~~~-l-~i~G~g~-----~~~~l~~~~~~~~v~~~--g~~~~~~~~~~----~~~adi~v~ps~---~e 253 (377)
.-++.++++ |+.+ + +++.... ..+.+++.++..++.+. ..-+.+|+... -...|+++++.. ..
T Consensus 119 ~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~ 198 (294)
T PF04392_consen 119 KQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDS 198 (294)
T ss_dssp HHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHh
Confidence 455545444 6543 3 3444332 23455555555554332 22233454443 345788777653 23
Q ss_pred ccchHHHHHHhcCCCeEEec
Q 017114 254 TLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.+...+..+...++||+++.
T Consensus 199 ~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 199 NFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp THHHHHHHCCCTT--EEESS
T ss_pred HHHHHHHHHHhcCCCEEECC
Confidence 33444556678899999864
No 238
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=60.07 E-value=42 Score=26.34 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=27.1
Q ss_pred hhHHHHHhcCCEEEe--ccC---CcccchHHHHHHhcCCCeEEe
Q 017114 234 EELSQAYASGDVFVM--PSE---SETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 234 ~~~~~~~~~adi~v~--ps~---~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.++.++++.||++++ |.. ..-++-..++.|--|.-+|-+
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 578889999999887 333 234567788888878766644
No 239
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=59.41 E-value=74 Score=28.19 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=55.6
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCC-CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEe--c
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM--P 249 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~-~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~--p 249 (377)
++..++.+|. .. | ...++++...+ +++++-+.+. ..+..++.+++.++. .+ .++.+++...|+.++ |
T Consensus 2 ~~~rVgViG~-~~--G-~~h~~al~~~~~~~eLvaV~d~-~~erA~~~A~~~gi~--~y---~~~eell~d~Di~~V~ip 71 (343)
T TIGR01761 2 DVQSVVVCGT-RF--G-QFYLAAFAAAPERFELAGILAQ-GSERSRALAHRLGVP--LY---CEVEELPDDIDIACVVVR 71 (343)
T ss_pred CCcEEEEEeH-HH--H-HHHHHHHHhCCCCcEEEEEEcC-CHHHHHHHHHHhCCC--cc---CCHHHHhcCCCEEEEEeC
Confidence 3456888886 32 3 45778888887 6777655543 345556666655543 22 455566666665443 4
Q ss_pred cC--CcccchHHHHHHhcCCCeEEec
Q 017114 250 SE--SETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 250 s~--~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
+. .....-...+|+..|+.|++-.
T Consensus 72 t~~P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 72 SAIVGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred CCCCCccHHHHHHHHHhCCCeEEEcC
Confidence 32 1223456778999999999753
No 240
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=59.40 E-value=30 Score=29.32 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCceEEEEecCccHH----HHHHhhc--CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH
Q 017114 190 DFLKRVMDRLPEARIAFIGDGPYRE----ELEKMFT--GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 263 (377)
Q Consensus 190 ~~l~~a~~~l~~~~l~i~G~g~~~~----~l~~~~~--~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 263 (377)
..+++++...++++++-+-+.+..+ .+..... ...+.+. .++..+...+|+++-.+..+...-.+..++
T Consensus 15 ~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~-----~d~~~l~~~~DvVIdfT~p~~~~~~~~~al 89 (266)
T TIGR00036 15 RELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVT-----DDLEAVETDPDVLIDFTTPEGVLNHLKFAL 89 (266)
T ss_pred HHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceee-----CCHHHhcCCCCEEEECCChHHHHHHHHHHH
Confidence 4566666666887776543311111 1111111 0122221 334344356899998887666677889999
Q ss_pred hcCCCeEEecCC
Q 017114 264 SSGIPVVGVRAG 275 (377)
Q Consensus 264 a~G~PvI~~~~~ 275 (377)
..|+|+|+...+
T Consensus 90 ~~g~~vVigttg 101 (266)
T TIGR00036 90 EHGVRLVVGTTG 101 (266)
T ss_pred HCCCCEEEECCC
Confidence 999999975544
No 241
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.23 E-value=1.4e+02 Score=26.97 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=43.2
Q ss_pred HHHHHHhcCCCeEEecCCCCCccccc-cCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH-hcCHHHH
Q 017114 258 VVLEAMSSGIPVVGVRAGGIPDIIPE-DQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEME-KYDWRAA 334 (377)
Q Consensus 258 ~~~Ea~a~G~PvI~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~-~~s~~~~ 334 (377)
++---.+.++||+--..|..-+-++. +...-.+.+..-+|.+.|.+.+.++.. |.+ ++.++ .-+ +|+...+
T Consensus 259 AlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~~d~~---el~~k---l~~gkFtlrd~ 332 (483)
T KOG0780|consen 259 ALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGKDDAK---ELVEK---LKQGKFTLRDF 332 (483)
T ss_pred eeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHhhhhHH---HHHHH---HHhCCccHHHH
Confidence 33344578999997776654433311 011112334456788999999888862 222 11111 112 6888888
Q ss_pred HHHHHH
Q 017114 335 TRTIRN 340 (377)
Q Consensus 335 ~~~~~~ 340 (377)
.+++-+
T Consensus 333 y~Qfq~ 338 (483)
T KOG0780|consen 333 YDQFQN 338 (483)
T ss_pred HHHHHH
Confidence 887763
No 242
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=59.19 E-value=1.4e+02 Score=27.11 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=65.2
Q ss_pred CCCCeEEEeecccccccHHHHHHHHHhC-CCceEEEEe-cCccHHHHHHhhcCC-CEEEccccCchhHHHHHh--cCCEE
Q 017114 172 PDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIG-DGPYREELEKMFTGM-PAVFTGMLLGEELSQAYA--SGDVF 246 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~~~~l~~a~~~l-~~~~l~i~G-~g~~~~~l~~~~~~~-~v~~~g~~~~~~~~~~~~--~adi~ 246 (377)
.+..+.+...+.+...-..-+++++... |++.+++.. .....+..++...+. .+.+++.=..--+..+++ +-|++
T Consensus 48 ~~p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~ 127 (419)
T COG1519 48 EGPLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLL 127 (419)
T ss_pred CCCeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEE
Confidence 3556777777888887788888877655 899888765 444455555555443 223333211123444544 35666
Q ss_pred EeccCCcccchHHHHHHhcCCCeEEe
Q 017114 247 VMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 247 v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
|+. -.|-+|+.+.|+-..|+|++.-
T Consensus 128 Ii~-EtElWPnli~e~~~~~~p~~Lv 152 (419)
T COG1519 128 IIM-ETELWPNLINELKRRGIPLVLV 152 (419)
T ss_pred EEE-eccccHHHHHHHHHcCCCEEEE
Confidence 544 3589999999999999999854
No 243
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=58.05 E-value=15 Score=30.04 Aligned_cols=103 Identities=19% Similarity=0.363 Sum_probs=52.2
Q ss_pred EEEeecccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCCEEEccccCchhH-HHHHhcCCEEEeccC--
Q 017114 177 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEEL-SQAYASGDVFVMPSE-- 251 (377)
Q Consensus 177 i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~v~~~g~~~~~~~-~~~~~~adi~v~ps~-- 251 (377)
|+=.|+++...-++++++-...-+++...++|+|.- .+.+.+.. .++ .++ .-|++++.|-
T Consensus 6 iiKlGNig~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~~~-------------~~~~~~~--~pdf~I~isPN~ 70 (276)
T PF01993_consen 6 IIKLGNIGTSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEEVV-------------TKMLKEW--DPDFVIVISPNA 70 (276)
T ss_dssp EEEES--HHHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHHHH-------------HHHHHHH----SEEEEE-S-T
T ss_pred EEEecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHH-------------HHHHHhh--CCCEEEEECCCC
Confidence 444566654444444444333336888888887752 12222111 111 122 4577666554
Q ss_pred CcccchHHHHHH-hcCCCeEE-ecCCCC--CccccccCCCCeeEEeCCCC
Q 017114 252 SETLGLVVLEAM-SSGIPVVG-VRAGGI--PDIIPEDQDGKIGYLFNPGD 297 (377)
Q Consensus 252 ~e~~~~~~~Ea~-a~G~PvI~-~~~~~~--~~~~~~~~~~~~g~~~~~~~ 297 (377)
.-+.|.+.-|.+ +.|+|+|. +|.++. .+-+ ++.+.|+++-..|
T Consensus 71 ~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l---~~~g~GYIivk~D 117 (276)
T PF01993_consen 71 AAPGPTKAREMLSAKGIPCIVISDAPTKKAKDAL---EEEGFGYIIVKAD 117 (276)
T ss_dssp TSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHH---HHTT-EEEEETTS
T ss_pred CCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHH---HhcCCcEEEEecC
Confidence 445577888988 68999764 555543 3444 5667788776544
No 244
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=57.74 E-value=42 Score=20.63 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=38.3
Q ss_pred ceEEEEec--CccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 202 ARIAFIGD--GPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~--g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
..+.+.|. +...+.+.+++...+-.+...++ ..++.+|.+.... ......+...|+|+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~--------~~~thvI~~~~~~--~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVS--------KKTTHVIVGSDAG--PKKLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEecccc--------CCceEEEECCCCC--chHHHHHHHcCCeEecH
Confidence 45777775 46777888877765434443332 4566666665422 22277888999999864
No 245
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=57.71 E-value=27 Score=29.35 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=51.2
Q ss_pred hHHHHHhcCCEEEecc-CCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh--C
Q 017114 235 ELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY--N 311 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~--~ 311 (377)
.-..-++.||++|.-. ..|++-.++.+........+..-..++...- .+.+.-+..+|.+...+++.|.+.+. +
T Consensus 40 ~d~~~l~~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~---~~~npH~Wldp~~~~~~~~~Ia~~L~~~~ 116 (256)
T PF01297_consen 40 SDIKKLQKADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGIDLDH---HGHNPHVWLDPENAKKMAEAIADALSELD 116 (256)
T ss_dssp HHHHHHHHSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS-GST---TCBESTGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCEEEEeCCccchhhhhhhhcccccccceEEeeccccccc---CCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445678999999865 3677877777555555555544344442211 11222345556666667777666654 6
Q ss_pred HHHHHHHHHHHHHHHH
Q 017114 312 QELRETMGQAARQEME 327 (377)
Q Consensus 312 ~~~~~~~~~~~~~~~~ 327 (377)
|+......+|+.++.+
T Consensus 117 P~~~~~y~~N~~~~~~ 132 (256)
T PF01297_consen 117 PANKDYYEKNAEKYLK 132 (256)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHH
Confidence 6666666666655443
No 246
>PRK07714 hypothetical protein; Provisional
Probab=57.14 E-value=49 Score=23.06 Aligned_cols=75 Identities=8% Similarity=0.102 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHhCCCceEEEEecC---ccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHH
Q 017114 187 KSLDFLKRVMDRLPEARIAFIGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 262 (377)
Q Consensus 187 k~~~~l~~a~~~l~~~~l~i~G~g---~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea 262 (377)
.|.+..+++++.- ++.++|+... ...+.+..++...+|.+....+.+|+-..+......++.-..+++.-.+++.
T Consensus 21 ~G~~~v~~al~~g-~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eLG~a~Gk~~~~~vai~d~g~a~~l~~~ 98 (100)
T PRK07714 21 SGEELVLKEVRSG-KAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLGHAIGKDERVVVAVLDEGFAKKLRSM 98 (100)
T ss_pred ecHHHHHHHHHhC-CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCcceEEEEeCchhHHHHHHH
Confidence 4678888888774 6777777633 2345555555555665555556688887777654433333345555555543
No 247
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=57.04 E-value=60 Score=28.29 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=29.5
Q ss_pred hhHHHHHhcCCEEEe--ccCCc---ccchHHHHHHhcCCCeEEecCC
Q 017114 234 EELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 234 ~~~~~~~~~adi~v~--ps~~e---~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
.++.++++.||++++ |...+ -++-..++.|--|.-+|-+.-|
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG 234 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRG 234 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCc
Confidence 478899999999876 43333 3567788888777777755443
No 248
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=56.17 E-value=41 Score=26.19 Aligned_cols=62 Identities=8% Similarity=0.188 Sum_probs=40.1
Q ss_pred HHHHHHHHhC----CCceEEEEecCcc-HHHHHHhhcCC--CEEEccccCchhHHHHHhcCCEEEeccCC
Q 017114 190 DFLKRVMDRL----PEARIAFIGDGPY-REELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSES 252 (377)
Q Consensus 190 ~~l~~a~~~l----~~~~l~i~G~g~~-~~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~~ 252 (377)
...+++++.+ .+-+++|+|.|.. ...+.+...+. +|.+.... .+++.+.++.||++|.....
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~-~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK-TKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC-chhHHHHHhhCCEEEEcCCC
Confidence 3344444443 5789999998874 44344444333 35555543 37899999999999987643
No 249
>PRK06932 glycerate dehydrogenase; Provisional
Probab=55.73 E-value=61 Score=28.29 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=31.0
Q ss_pred hhHHHHHhcCCEEEe--ccCC---cccchHHHHHHhcCCCeEEecCCC
Q 017114 234 EELSQAYASGDVFVM--PSES---ETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 234 ~~~~~~~~~adi~v~--ps~~---e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
.++.++++.||++++ |... .-++-..++.|--|.-+|-+.-|+
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 236 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGP 236 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCcc
Confidence 468899999999886 4332 335778888998887777654443
No 250
>PRK06487 glycerate dehydrogenase; Provisional
Probab=55.65 E-value=56 Score=28.57 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=30.4
Q ss_pred hhHHHHHhcCCEEEe--ccCC---cccchHHHHHHhcCCCeEEecCCC
Q 017114 234 EELSQAYASGDVFVM--PSES---ETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 234 ~~~~~~~~~adi~v~--ps~~---e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
.++.++++.||++++ |... .-++-..+..|--|.-+|-+.-|+
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~ 236 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGG 236 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcc
Confidence 368899999999886 3332 345778888888887777554443
No 251
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=55.01 E-value=64 Score=26.14 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHhcCCEEEeccCC--------cccc-----hHHHHHHhcCCCeEEecCC
Q 017114 239 AYASGDVFVMPSES--------ETLG-----LVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 239 ~~~~adi~v~ps~~--------e~~~-----~~~~Ea~a~G~PvI~~~~~ 275 (377)
....||++++|... -|.+ ..+++++..|+||++...+
T Consensus 50 ~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V~v~~eg 99 (207)
T TIGR02536 50 EQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPIYILKPG 99 (207)
T ss_pred hhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeEEEEecc
Confidence 45588998888642 1222 5699999999999987644
No 252
>PLN02928 oxidoreductase family protein
Probab=53.30 E-value=59 Score=28.86 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=29.2
Q ss_pred chhHHHHHhcCCEEEec--cCC---cccchHHHHHHhcCCCeEEecCC
Q 017114 233 GEELSQAYASGDVFVMP--SES---ETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~p--s~~---e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
..++.++++.||++++. ... .-++-..+..|--|.-+|-+.-|
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG 264 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARG 264 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCc
Confidence 45788999999998873 332 23466788888777666654333
No 253
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=51.37 E-value=80 Score=26.94 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=53.9
Q ss_pred hHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCC-CCCcccccc--CCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 235 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPED--QDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~-~~~~~~~~~--~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.-..-++.||++|.-.. .|+|-.++++....+.++|....+ ........+ .+.+.-+..++.+...+++.|.+.+.
T Consensus 43 ~d~~~l~~Adliv~~G~~~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~ 122 (276)
T cd01016 43 GDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKLWKYAVKAVAEVLS 122 (276)
T ss_pred HHHHHHHhCCEEEEcCcChHHHHHHHHHHhccCCceEEeccCcCcccccccccCCCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 44566889999887653 577777888876544555543222 111111000 01134456666677777777777765
Q ss_pred --CHHHHHHHHHHHHHHHH
Q 017114 311 --NQELRETMGQAARQEME 327 (377)
Q Consensus 311 --~~~~~~~~~~~~~~~~~ 327 (377)
||+......+++..+.+
T Consensus 123 ~~dP~~~~~y~~N~~~~~~ 141 (276)
T cd01016 123 EKLPEHKDEFQANSEAYVE 141 (276)
T ss_pred HHCcccHHHHHHHHHHHHH
Confidence 67666666666665544
No 254
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=50.56 E-value=13 Score=22.62 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.6
Q ss_pred chHHHHHHhcCCCeEEe
Q 017114 256 GLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~~ 272 (377)
-.++.|++.+|.||++-
T Consensus 14 K~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 14 KDKIAESAVMGTPVVAL 30 (58)
T ss_pred hhHHHHHHhcCceeEee
Confidence 35799999999999964
No 255
>PRK07283 hypothetical protein; Provisional
Probab=50.25 E-value=47 Score=23.10 Aligned_cols=73 Identities=10% Similarity=0.119 Sum_probs=45.0
Q ss_pred cHHHHHHHHHhCCCceEEEEecCc---cHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHH
Q 017114 188 SLDFLKRVMDRLPEARIAFIGDGP---YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 262 (377)
Q Consensus 188 ~~~~l~~a~~~l~~~~l~i~G~g~---~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea 262 (377)
|.+...++++.- +..++|+.... ..+.+.+.+...+|.+....+.+|+-..+... ..++.-..+||...+++.
T Consensus 22 G~~~v~~aik~g-k~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~eLG~a~Gk~-~~vvai~d~g~a~~l~~~ 97 (98)
T PRK07283 22 GEELVVKAIQSG-QAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLELSAAVGKP-RKVLAVTDAGFSKKMRSL 97 (98)
T ss_pred cHHHHHHHHHcC-CccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCC-ceEEEEeChhHHHHHHHh
Confidence 567777777763 57777776432 34455555555566555555668888888773 444444456777766653
No 256
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=49.95 E-value=1.3e+02 Score=25.13 Aligned_cols=94 Identities=17% Similarity=0.283 Sum_probs=48.3
Q ss_pred cccHHHHHHHHHhC----CCceEEEEecCccHH-HHHHhhcCCC-----EEEc-cccCchhHHHHHhcCCEEEeccCCcc
Q 017114 186 EKSLDFLKRVMDRL----PEARIAFIGDGPYRE-ELEKMFTGMP-----AVFT-GMLLGEELSQAYASGDVFVMPSESET 254 (377)
Q Consensus 186 ~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~-~l~~~~~~~~-----v~~~-g~~~~~~~~~~~~~adi~v~ps~~e~ 254 (377)
.|-.+.+..|++-+ ..-.++++|..++.+ .+.+.+...+ =.|+ |.+++ .+...+..=|++|+... ..
T Consensus 52 ~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN-~~~~~f~~P~llIV~Dp-~~ 129 (249)
T PTZ00254 52 AKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTN-QIQKKFMEPRLLIVTDP-RT 129 (249)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCC-ccccccCCCCEEEEeCC-Cc
Confidence 34444444444332 345677788665443 2333333221 1233 33322 23333445566655432 22
Q ss_pred cchHHHHHHhcCCCeEEe-cCCCCCccc
Q 017114 255 LGLVVLEAMSSGIPVVGV-RAGGIPDII 281 (377)
Q Consensus 255 ~~~~~~Ea~a~G~PvI~~-~~~~~~~~~ 281 (377)
-...+.||..+|+|||+- |....++.+
T Consensus 130 d~qAI~EA~~lnIPvIal~DTds~p~~V 157 (249)
T PTZ00254 130 DHQAIREASYVNIPVIALCDTDSPLEYV 157 (249)
T ss_pred chHHHHHHHHhCCCEEEEecCCCCcccC
Confidence 356899999999999976 444445554
No 257
>PLN02929 NADH kinase
Probab=49.47 E-value=64 Score=27.89 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=43.3
Q ss_pred hHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC-----Cccccc-cCCCCeeEEeCCCCHHHHHHHHHHH
Q 017114 235 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI-----PDIIPE-DQDGKIGYLFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~-----~~~~~~-~~~~~~g~~~~~~~~~~l~~~i~~~ 308 (377)
++......+|++|.--- +|.=+...-.+..++||+.-+.|.. .++.++ ++.+..|+++.. +++++.+++.++
T Consensus 57 ~~~~~~~~~Dlvi~lGG-DGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~-~~~~~~~~L~~i 134 (301)
T PLN02929 57 ELSQPIRDVDLVVAVGG-DGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAA-TAEDFEQVLDDV 134 (301)
T ss_pred ccccccCCCCEEEEECC-cHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccC-CHHHHHHHHHHH
Confidence 33444567898875431 2222222233456799998877631 111100 023457888865 678899999988
Q ss_pred hhC
Q 017114 309 LYN 311 (377)
Q Consensus 309 ~~~ 311 (377)
++.
T Consensus 135 l~g 137 (301)
T PLN02929 135 LFG 137 (301)
T ss_pred HcC
Confidence 864
No 258
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.17 E-value=47 Score=30.09 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=47.8
Q ss_pred HhcCCEEEeccCCc------ccchHHHHHHhcCCCeEEecCCCCCc--cc-cccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 240 YASGDVFVMPSESE------TLGLVVLEAMSSGIPVVGVRAGGIPD--II-PEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 240 ~~~adi~v~ps~~e------~~~~~~~Ea~a~G~PvI~~~~~~~~~--~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
|.--|++++|.+.+ .+.+.+.+.+.+..|+|.++-+...+ +. ...+.+..|++-...+++++.+.+.++-
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l~~eI~~vk 88 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVK 88 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHHHH
Confidence 45568888888644 34567889999999999876543322 11 0015677787776678888888887764
No 259
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=48.95 E-value=1.4e+02 Score=24.01 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=60.7
Q ss_pred ceEEEEecCcc-HHHHHHhhcCC-CEEEcccc-CchhHHHHHh--cCCEEEeccCCcc----cchHHHHHHh---cCCCe
Q 017114 202 ARIAFIGDGPY-REELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSESET----LGLVVLEAMS---SGIPV 269 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~-~v~~~g~~-~~~~~~~~~~--~adi~v~ps~~e~----~~~~~~Ea~a---~G~Pv 269 (377)
.+++++.+.+. ...+....... .+...+.. +.++....+. ..|++++-....+ .|..+++.+. .++||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~i 83 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSI 83 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 46666665543 33455554432 23333322 2244555444 3688877543222 4566666654 34666
Q ss_pred EEe-cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 270 VGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 270 I~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
|.. ..... ...+ +.|-.|++..+.+++++.+++..++.
T Consensus 84 Ivls~~~~~~~~~~a~---~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 84 IVLTMNNNPAILSAVL---DLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred EEEEecCCHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 644 33322 2334 66778999999999999999988765
No 260
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.55 E-value=83 Score=29.50 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=70.8
Q ss_pred hhHHHHHhcCCEEEe-ccC-----CcccchHHHHHHhcC-CCeEEecCC--CCCccccccCCCCeeEEeCCCCHHHHHHH
Q 017114 234 EELSQAYASGDVFVM-PSE-----SETLGLVVLEAMSSG-IPVVGVRAG--GIPDIIPEDQDGKIGYLFNPGDLDDCLSK 304 (377)
Q Consensus 234 ~~~~~~~~~adi~v~-ps~-----~e~~~~~~~Ea~a~G-~PvI~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 304 (377)
++-.++++.+.+.+. |.. .+.|-..++||+..| +|||..+.- ...+.+ .-....+..+-.-..+ +..
T Consensus 408 ~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~i---dWrraal~lPkaR~tE-~HF 483 (907)
T KOG2264|consen 408 ERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLI---DWRRAALRLPKARLTE-AHF 483 (907)
T ss_pred HHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHH---HHHHHhhhCCccccch-HHH
Confidence 567788888887554 421 456777899999999 578876532 455665 4445555554333222 233
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhcccccchhh
Q 017114 305 LEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRKKRAQLLRPIQW 363 (377)
Q Consensus 305 i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~~~~~~~~~~~~~~~ 363 (377)
+.+.++|.++ -.|+..+| +-|+.....-. .+.+.++..-+.|.+...++.++
T Consensus 484 llrs~~dsDl-l~mRRqGR-----l~wEtYls~~~-~~~~tvlA~lR~rlqIP~rpvr~ 535 (907)
T KOG2264|consen 484 LLRSFEDSDL-LEMRRQGR-----LFWETYLSDRH-LLARTVLAALRYRLQIPTRPVRR 535 (907)
T ss_pred HHHhcchhhH-HHHHhhhh-----hhHHHHhhHHH-HHHHHHHHHHHHhhCCCCcccch
Confidence 4444555554 34555554 45555555554 57777777666666665555554
No 261
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=48.48 E-value=1.7e+02 Score=24.75 Aligned_cols=74 Identities=15% Similarity=0.055 Sum_probs=47.6
Q ss_pred EEEccccCchhHHHHHhcCCEEEeccC----CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHH
Q 017114 225 AVFTGMLLGEELSQAYASGDVFVMPSE----SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDD 300 (377)
Q Consensus 225 v~~~g~~~~~~~~~~~~~adi~v~ps~----~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 300 (377)
|-..|..+.+.=..++++..+-++-+. ..|+.-|+--|..+|+|||.-+-+..+.-. ..+ .+.++
T Consensus 178 ia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~~---------~~~--~~~~e 246 (256)
T TIGR00715 178 IAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPGV---------AIF--DDISQ 246 (256)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCCC---------ccC--CCHHH
Confidence 556677776655677777665444333 135677999999999999987766542211 122 37777
Q ss_pred HHHHHHHHh
Q 017114 301 CLSKLEPLL 309 (377)
Q Consensus 301 l~~~i~~~~ 309 (377)
+.+.+.+++
T Consensus 247 l~~~l~~~~ 255 (256)
T TIGR00715 247 LNQFVARLL 255 (256)
T ss_pred HHHHHHHhc
Confidence 777776543
No 262
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=48.30 E-value=1.3e+02 Score=26.14 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=47.6
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCc
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 253 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e 253 (377)
...++.+|.- .-| ..+.+.+......++.+++..+ +...+++.+.+... ++.+++.+.+..+|+++..+...
T Consensus 178 ~~~V~ViGaG--~iG-~~~a~~L~~~g~~~V~v~~r~~--~ra~~la~~~g~~~---~~~~~~~~~l~~aDvVi~at~~~ 249 (311)
T cd05213 178 GKKVLVIGAG--EMG-ELAAKHLAAKGVAEITIANRTY--ERAEELAKELGGNA---VPLDELLELLNEADVVISATGAP 249 (311)
T ss_pred CCEEEEECcH--HHH-HHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHcCCeE---EeHHHHHHHHhcCCEEEECCCCC
Confidence 4456666641 112 2334444442234566666433 22233333322221 22356778889999999876543
Q ss_pred ccchHHHHHHh--cCCCeEEecCCCCCc
Q 017114 254 TLGLVVLEAMS--SGIPVVGVRAGGIPD 279 (377)
Q Consensus 254 ~~~~~~~Ea~a--~G~PvI~~~~~~~~~ 279 (377)
.....+-+++. .|.|.+.-|.+-.++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~viDlavPrd 277 (311)
T cd05213 250 HYAKIVERAMKKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred chHHHHHHHHhhCCCCCeEEEEeCCCCC
Confidence 33122222332 245666666664344
No 263
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=47.83 E-value=2.2e+02 Score=25.97 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCCeEEEeecccccccHHHHHHHHHh-CCCceEEEEecCc-cHHHHHHhhc-CCCEEEccccCchhHHHHHhc--CCEEE
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYAS--GDVFV 247 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~-l~~~~l~i~G~g~-~~~~l~~~~~-~~~v~~~g~~~~~~~~~~~~~--adi~v 247 (377)
++.+.+..++.+...-...+++.+.. .|++++.+.-..+ ..+...+... ...+.+.+.-....+..+++. -|+++
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~ 129 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVI 129 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEE
Confidence 45677888888877777778877754 4788776654222 2233333222 123445554333456666654 47776
Q ss_pred eccCCcccchHHHHHHhcCCCeEEec
Q 017114 248 MPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
... .+.+++.+..+-..|+|++..+
T Consensus 130 ~~~-~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 130 IME-TELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred EEe-cchhHHHHHHHHHCCCCEEEEe
Confidence 543 3667888888888999998753
No 264
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=47.82 E-value=1.2e+02 Score=26.02 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=51.9
Q ss_pred chhHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCC-CCCcccc-------------------ccCC--CCe
Q 017114 233 GEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAG-GIPDIIP-------------------EDQD--GKI 289 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~-~~~~~~~-------------------~~~~--~~~ 289 (377)
...-..-++.||++|.-.. .|+|-.++++... +.++|....+ +...... ...+ .+.
T Consensus 43 ~p~d~~~l~~Adliv~~G~~le~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~dP 121 (286)
T cd01019 43 RPSDARKLQEADLVVWIGPDLEAFLDKVLQGRK-KGKVLTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLDP 121 (286)
T ss_pred CHHHHHHHHhCCEEEEeCCCchHHHHHHHHhcC-cCceEecccCCcccccccccccccccccccccccccCCCCCCCCCC
Confidence 3344566888999887653 5777777777653 3455533211 1100000 0000 123
Q ss_pred eEEeCCCCHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 017114 290 GYLFNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 290 g~~~~~~~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
-+..++.+...++++|.+.+. +|+......+|+.++.+
T Consensus 122 HiWldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~ 161 (286)
T cd01019 122 HLWLSPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNA 161 (286)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHH
Confidence 355566666777777776665 77776677777666554
No 265
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=47.76 E-value=1.2e+02 Score=26.29 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=56.1
Q ss_pred hHHHHHhcCCEEEeccC-CcccchHHHHHHhcCC-CeEEecCC-CCCccccc--cCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 235 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGI-PVVGVRAG-GIPDIIPE--DQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~-PvI~~~~~-~~~~~~~~--~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.=..-++.||+++.-.. .|+|-.++++.+.... ++|....+ ..-..... +...+.....+|.+...+++.|.+.+
T Consensus 74 ~di~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~i~~s~~i~~~~~~~~~~~g~~dpH~Wldp~na~~~v~~I~~~L 153 (303)
T COG0803 74 SDIAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLVIEVSDGIELLPLPGEEEEGVNDPHVWLDPKNAKIYAENIADAL 153 (303)
T ss_pred HHHHHHHhCCEEEEcCCChHHHHHHHHHhcccCCceEEEccCCccccCCCCccccCCCCCCeecCHHHHHHHHHHHHHHH
Confidence 33456788999887654 5777777887776554 34422111 11111100 01234556677777777777777766
Q ss_pred h--CHHHHHHHHHHHHHHHHh
Q 017114 310 Y--NQELRETMGQAARQEMEK 328 (377)
Q Consensus 310 ~--~~~~~~~~~~~~~~~~~~ 328 (377)
. ||+......+|+.++.++
T Consensus 154 ~~~dP~~~~~y~~N~~~y~~k 174 (303)
T COG0803 154 VELDPENKETYEKNAEAYLKK 174 (303)
T ss_pred HHhCcccHHHHHHHHHHHHHH
Confidence 5 888777777787776543
No 266
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=47.61 E-value=70 Score=28.15 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=32.3
Q ss_pred chHHHHHHHHhcCCCEEEeC---CCchhHHHHH----HHHHhhCCCEEEEeccCC
Q 017114 43 LSPRIISEVARFKPDIIHAS---SPGIMVFGAL----IIAKLLCVPIVMSYHTHV 90 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~---~~~~~~~~~~----~~~~~~~~~~i~~~h~~~ 90 (377)
...++...+++.+||++++- +..-.+.++. .+....++|++..++.--
T Consensus 68 a~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~~EN 122 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMYEEN 122 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEecccC
Confidence 34678999999999999984 2222333222 244568999998776543
No 267
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=47.17 E-value=1.1e+02 Score=22.40 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=42.4
Q ss_pred CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCc
Q 017114 223 MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 223 ~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~ 279 (377)
..+.+....+.+++.+.+..+|+++..+.. .+.-.+++.+ -++.+|++...|...
T Consensus 19 ~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~ 73 (133)
T PF00389_consen 19 FEVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDN 73 (133)
T ss_dssp SEEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTT
T ss_pred ceEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCc
Confidence 368888888888999999999999975532 4778888888 888888887666644
No 268
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=46.98 E-value=34 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=27.0
Q ss_pred HHHHhcCCEEEec---cCCcccchHHHH---HHhcCCCeEEecC
Q 017114 237 SQAYASGDVFVMP---SESETLGLVVLE---AMSSGIPVVGVRA 274 (377)
Q Consensus 237 ~~~~~~adi~v~p---s~~e~~~~~~~E---a~a~G~PvI~~~~ 274 (377)
...+.+||++|.- .+.+.=+.+.+| |.|.|+||++...
T Consensus 63 ~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~ 106 (172)
T COG3613 63 IKLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRK 106 (172)
T ss_pred HHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEee
Confidence 3578899998763 333444666776 6799999998754
No 269
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=46.92 E-value=1.5e+02 Score=23.60 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=50.6
Q ss_pred CCeEEEeecccccccHHHHHHHHHhC-CCceEEEEecCcc-HHHHHHhhcC-CCEEEccccCchhHHHHHhcC--CEEEe
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPY-REELEKMFTG-MPAVFTGMLLGEELSQAYASG--DVFVM 248 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l-~~~~l~i~G~g~~-~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~a--di~v~ 248 (377)
+.+.++..+.+.......+++.+... |+.++++....+. .+..++...+ ..+.+.+.=....+..+++.- |++|.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~ 101 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIW 101 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEE
Confidence 56777777888877778888877654 8999988875433 3344444322 245554431123455666654 66665
Q ss_pred ccCCcccchHHHHHHhcCCCeEEec
Q 017114 249 PSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.- .|-+|+-+.++-..|+|++.-+
T Consensus 102 ~E-tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 102 VE-TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ES-----HHHHHH-----S-EEEEE
T ss_pred Ec-cccCHHHHHHHhhcCCCEEEEe
Confidence 43 5889999999999999998653
No 270
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=46.52 E-value=1.5e+02 Score=25.27 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=53.2
Q ss_pred CeEEEeecccccccHHHHHHHHHh-CCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCc
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 253 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~-l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e 253 (377)
..+..+|--.- -..+.+.+.. .+++++..+.+. ..+..++.....++ .... .++.+++..+|+++..+...
T Consensus 7 irIGIIG~G~I---G~~~a~~L~~~~~~~el~aV~dr-~~~~a~~~a~~~g~--~~~~--~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 7 LRVAIAGLGAI---GKAIAQALDRGLPGLTLSAVAVR-DPQRHADFIWGLRR--PPPV--VPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred eEEEEECccHH---HHHHHHHHHhcCCCeEEEEEECC-CHHHHHHHHHhcCC--Cccc--CCHHHHhcCCCEEEECCCcH
Confidence 44666553211 1234555555 467777655433 23334444433221 0111 45556678899999877655
Q ss_pred ccchHHHHHHhcCCCeEEecCC
Q 017114 254 TLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
...-...+++..|++|++...+
T Consensus 79 ~h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHHHHcCCcEEEecch
Confidence 5566678889999999975444
No 271
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=46.37 E-value=1e+02 Score=26.41 Aligned_cols=93 Identities=19% Similarity=0.153 Sum_probs=50.9
Q ss_pred hhHHHHHhcCCEEEeccC-CcccchHHHHHHhc-CCCeEEecCCCCCccc--c---------cc--CCCCeeEEeCCCCH
Q 017114 234 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSS-GIPVVGVRAGGIPDII--P---------ED--QDGKIGYLFNPGDL 298 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~-G~PvI~~~~~~~~~~~--~---------~~--~~~~~g~~~~~~~~ 298 (377)
..-..-++.||++|.-.. .|+|-.++++.... +.++|... .++..+- . .+ ...+.-+..++.+.
T Consensus 44 p~d~~~l~~Adliv~~G~~~e~w~~k~~~~~~~~~~~~v~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~ 122 (282)
T cd01017 44 PKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLKVVEAS-KGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVLA 122 (282)
T ss_pred HHHHHHHHhCCEEEEcCcchHHHHHHHHHhcccCCceEEECC-CCccccccccccccccccccccCCCCCCccccCHHHH
Confidence 344567889999887543 57777778877643 23444321 1111110 0 00 00123455666666
Q ss_pred HHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 017114 299 DDCLSKLEPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 299 ~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
..+++.|.+.+. +|+......+|+.++.+
T Consensus 123 ~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~ 153 (282)
T cd01017 123 IQQVENIKDALIKLDPDNKEYYEKNAAAYAK 153 (282)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 777777776665 66665666666655543
No 272
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=45.85 E-value=1.1e+02 Score=27.56 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=43.9
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEccc----------cCchhHHHHHhcCCEEE--eccCCc----c---cchHHHH
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTGM----------LLGEELSQAYASGDVFV--MPSESE----T---LGLVVLE 261 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~----------~~~~~~~~~~~~adi~v--~ps~~e----~---~~~~~~E 261 (377)
+-++-|+|-|..-..+.+.+...+....++ ....++.+++++||+++ +|...+ . ++...++
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~ 195 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIR 195 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHh
Confidence 445566665554444444443332211111 11246889999999988 454332 2 4567888
Q ss_pred HHhcCCCeEEecCCC
Q 017114 262 AMSSGIPVVGVRAGG 276 (377)
Q Consensus 262 a~a~G~PvI~~~~~~ 276 (377)
.|.-|.-+|-+.-|+
T Consensus 196 ~mk~gailIN~aRG~ 210 (378)
T PRK15438 196 SLKPGAILINACRGA 210 (378)
T ss_pred cCCCCcEEEECCCch
Confidence 888888777655443
No 273
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=45.40 E-value=1.5e+02 Score=23.18 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=48.6
Q ss_pred CcEEEEEeeCCCCC--------ccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchh-HHHHH
Q 017114 2 GDEVMVVTTHEGVP--------QEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIM-VFGAL 72 (377)
Q Consensus 2 G~~V~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~-~~~~~ 72 (377)
|+.|.++.++++.. ..++++++.+...-+. .......+.+.|++.+||+|++.-..+- -....
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f--------~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~ 119 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF--------DEEEEEAIINRINASGPDIVFVGLGAPKQERWIA 119 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--------ChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHH
Confidence 56788887776522 2455666654432211 3445678899999999999998653221 12223
Q ss_pred HHHHhhCCCEEEEeccCC
Q 017114 73 IIAKLLCVPIVMSYHTHV 90 (377)
Q Consensus 73 ~~~~~~~~~~i~~~h~~~ 90 (377)
......+.++++.+-+..
T Consensus 120 ~~~~~l~~~v~i~vG~~~ 137 (172)
T PF03808_consen 120 RHRQRLPAGVIIGVGGAF 137 (172)
T ss_pred HHHHHCCCCEEEEECchh
Confidence 345556677766665543
No 274
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.28 E-value=97 Score=26.24 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=49.5
Q ss_pred hHHHHHhcCCEEEeccC-Ccc-cchHHHHHHhcCCCeEEecCCCCCccc-cc-------------cCCCCeeEEeCCCCH
Q 017114 235 ELSQAYASGDVFVMPSE-SET-LGLVVLEAMSSGIPVVGVRAGGIPDII-PE-------------DQDGKIGYLFNPGDL 298 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~-~e~-~~~~~~Ea~a~G~PvI~~~~~~~~~~~-~~-------------~~~~~~g~~~~~~~~ 298 (377)
.-..-++.||++|.-.. .|+ |--++++.. -+.++|....+ +..+. .. ....+..+..+|.+.
T Consensus 44 ~d~~~l~~Adlvv~~G~~le~~w~~~~~~~~-~~~~~v~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~ 121 (266)
T cd01018 44 QQMKKLSEADLYFRIGLGFEEVWLERFRSNN-PKMQVVNMSKG-ITLIPMADHHHHHHGEHEHHHHGNYDPHIWLSPANA 121 (266)
T ss_pred HHHHHHHhCCEEEEcCCcchHHHHHHHHhhC-CCCeEEECCCC-ceeccccccccccccccccccCCCCCCccCcCHHHH
Confidence 44566888999887653 454 555566543 24455543211 11000 00 001134455666677
Q ss_pred HHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 017114 299 DDCLSKLEPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 299 ~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
..++++|.+.+. +|+......+|+..+.+
T Consensus 122 ~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~ 152 (266)
T cd01018 122 KIMAENIYEALAELDPQNATYYQANLDALLA 152 (266)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 777777777765 67766666666665543
No 275
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=45.12 E-value=66 Score=31.42 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=15.9
Q ss_pred hHHHHHHHHhcCCCEEEeC
Q 017114 44 SPRIISEVARFKPDIIHAS 62 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~ 62 (377)
...+.+++++.+||+|+++
T Consensus 511 v~~i~~li~~~kP~~V~~~ 529 (652)
T PRK02122 511 VEIVMDLLEEIKPHQIFVA 529 (652)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 4568888899999999887
No 276
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=44.93 E-value=73 Score=27.00 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHhCC-CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeE
Q 017114 192 LKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 192 l~~a~~~l~-~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
+.+++.... ++++..+-+ ...+..++.....++. ..+++.+++..+|+++.....+...--..+++..|+.|+
T Consensus 16 ia~~l~~~~~~~elv~v~d-~~~~~a~~~a~~~~~~-----~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vv 89 (265)
T PRK13304 16 ITKAILSGRINAELYAFYD-RNLEKAENLASKTGAK-----ACLSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVI 89 (265)
T ss_pred HHHHHHcCCCCeEEEEEEC-CCHHHHHHHHHhcCCe-----eECCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEE
Confidence 455554432 555544333 3334444444332322 124555566889999987655555555677888999998
Q ss_pred EecCCC
Q 017114 271 GVRAGG 276 (377)
Q Consensus 271 ~~~~~~ 276 (377)
+...+.
T Consensus 90 v~s~gA 95 (265)
T PRK13304 90 IMSVGA 95 (265)
T ss_pred EEchHH
Confidence 865543
No 277
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=44.81 E-value=1.9e+02 Score=25.44 Aligned_cols=75 Identities=11% Similarity=0.016 Sum_probs=45.0
Q ss_pred HHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 192 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 192 l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
.++++...++++++-+-+....+.+.. . + +.....+...++...|++++..-...-.-...++++.|+.||+
T Consensus 18 ~a~al~~~pd~ELVgV~dr~~~~~~~~---~--~---~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~ 89 (324)
T TIGR01921 18 VEKAIQQQPDMELVGVFSRRGAETLDT---E--T---PVYAVADDEKHLDDVDVLILCMGSATDIPEQAPYFAQFANTVD 89 (324)
T ss_pred HHHHHHhCCCcEEEEEEcCCcHHHHhh---c--C---CccccCCHHHhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEE
Confidence 566777778877765444332222221 1 1 2122234555668899998754333335667788999999998
Q ss_pred ecC
Q 017114 272 VRA 274 (377)
Q Consensus 272 ~~~ 274 (377)
+..
T Consensus 90 s~~ 92 (324)
T TIGR01921 90 SFD 92 (324)
T ss_pred CCC
Confidence 853
No 278
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=44.74 E-value=1.7e+02 Score=23.79 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=34.6
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
|+++.+|. ..+++-.-.-.|++..+.++..--... ......+-++|.+..+|+-+|+--++.
T Consensus 168 shlv~Vpp------g~~L~d~l~ssPii~ge~g~a~~~~~a-~g~~f~fgvdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 168 SHLVSVPP------GPLLSDALLSSPIIQGEDGGAAAGLGA-NGMDFEFGVDPEDDPELALALRLSMEE 229 (259)
T ss_pred ceEEEeCC------CccHHHHhhcCceeccCcccccccccc-cccccccCCCcccCHHHHHHHHhhHHH
Confidence 45555554 236666667789998764433222200 112233445666777899998765543
No 279
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=44.71 E-value=1.6e+02 Score=24.49 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=26.0
Q ss_pred ccccCchhHHHHHh-----cCCEEEeccC-Ccccc-hHHHHHHhcCCCeEEecCC
Q 017114 228 TGMLLGEELSQAYA-----SGDVFVMPSE-SETLG-LVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 228 ~g~~~~~~~~~~~~-----~adi~v~ps~-~e~~~-~~~~Ea~a~G~PvI~~~~~ 275 (377)
.+.++.+.+.+... .+|.++++-. .-+.. ..-+|.. .|+|||+++..
T Consensus 162 ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~-lGkPVlsSNqa 215 (239)
T TIGR02990 162 MARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQA-IGKPVVTSNQA 215 (239)
T ss_pred eeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHH-HCCCEEEHHHH
Confidence 34466667766665 3666655422 11111 1233433 79999998754
No 280
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=44.16 E-value=1.3e+02 Score=27.93 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=50.0
Q ss_pred ecccccccHHHHHHHHHhCCCceEEEEe-----cCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCE-EEeccCCcc
Q 017114 181 GRLGVEKSLDFLKRVMDRLPEARIAFIG-----DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDV-FVMPSESET 254 (377)
Q Consensus 181 G~~~~~k~~~~l~~a~~~l~~~~l~i~G-----~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi-~v~ps~~e~ 254 (377)
|.-...+-.+.+-.|+..-|...+.+-. .|.-...+.++....+++.+..- =.-..++...|= +..+|
T Consensus 161 g~a~~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~ed--fnpisll~~~dkvy~~ts---- 234 (671)
T COG3563 161 GGADASTFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAED--FNPISLLQNVDKVYCVTS---- 234 (671)
T ss_pred CCcchhHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccCceEEEeccc--CChHHHHHhcceeEEeec----
Confidence 3334445567777788877765544422 12223344444444456554321 133456677664 44443
Q ss_pred cchHHHHHHhcCCCeEEecCCCC
Q 017114 255 LGLVVLEAMSSGIPVVGVRAGGI 277 (377)
Q Consensus 255 ~~~~~~Ea~a~G~PvI~~~~~~~ 277 (377)
..=+||+.||+|+++...+..
T Consensus 235 --~mgfeall~~~~~~~fg~p~y 255 (671)
T COG3563 235 --QMGFEALLCGKPLTTFGLPWY 255 (671)
T ss_pred --cccHHHHhcCCceeeecchhh
Confidence 234799999999998765543
No 281
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=43.44 E-value=1.4e+02 Score=22.37 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=45.7
Q ss_pred EEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe-cCCCCCccc
Q 017114 204 IAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPDII 281 (377)
Q Consensus 204 l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~-~~~~~~~~~ 281 (377)
++=+|+|.... . .+..+.||--.+++..+...|.+++. .+.-.+++.++..++|.|.. +..-..|.+
T Consensus 34 IvQyGn~d~kp-----v--agl~v~~F~~~~kiQsli~darIVIS----HaG~GSIL~~~rl~kplIv~pr~s~y~elv 101 (161)
T COG5017 34 IVQYGNGDIKP-----V--AGLRVYGFDKEEKIQSLIHDARIVIS----HAGEGSILLLLRLDKPLIVVPRSSQYQELV 101 (161)
T ss_pred eeeecCCCccc-----c--cccEEEeechHHHHHHHhhcceEEEe----ccCcchHHHHhhcCCcEEEEECchhHHHhh
Confidence 34478765422 1 23678888888899999999997773 33356899999999998754 334344444
No 282
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=43.40 E-value=2.5e+02 Score=26.05 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=67.1
Q ss_pred ccccHHHHHHHHHhCCCceEEEEecC--ccHHHHHHhhcCCCEEEccccCc--------hhHHHHHhcCCEEEeccCCcc
Q 017114 185 VEKSLDFLKRVMDRLPEARIAFIGDG--PYREELEKMFTGMPAVFTGMLLG--------EELSQAYASGDVFVMPSESET 254 (377)
Q Consensus 185 ~~k~~~~l~~a~~~l~~~~l~i~G~g--~~~~~l~~~~~~~~v~~~g~~~~--------~~~~~~~~~adi~v~ps~~e~ 254 (377)
.+.+++.++.+.... +...+.-|-| ...+.+.+.+.+.++.|.|.-+. .....++.++-+=+.|.. ++
T Consensus 59 syl~i~~ii~~a~~~-gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs-~~ 136 (449)
T COG0439 59 SYLNIDAIIAAAEET-GADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGS-DG 136 (449)
T ss_pred hhhhHHHHHHHHHhc-CCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCC-CC
Confidence 355677777776655 5556666655 45566666666667777776432 245677788888777765 22
Q ss_pred cch----HHHHHHhcCCCeEEecCCCCCccccccCCCCee-EEeCCCCHHHHHHHHHHHh
Q 017114 255 LGL----VVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIG-YLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 255 ~~~----~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~l~~~i~~~~ 309 (377)
... ..--|-..|-|||.-...+.. ..| .++. +.++|.+++..+.
T Consensus 137 ~~~~~ee~~~~a~~iGyPVivKa~~GgG---------g~G~r~v~--~~~el~~a~~~~~ 185 (449)
T COG0439 137 AVADNEEALAIAEEIGYPVIVKAAAGGG---------GRGMRVVR--NEEELEAAFEAAR 185 (449)
T ss_pred CcCCHHHHHHHHHHcCCCEEEEECCCCC---------cccEEEEC--CHHHHHHHHHHHH
Confidence 211 122233567899965443321 122 3444 8899999887764
No 283
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=43.17 E-value=2.2e+02 Score=24.51 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=49.0
Q ss_pred ccHHHHHHHH-HhC-CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC---Ccccch----
Q 017114 187 KSLDFLKRVM-DRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE---SETLGL---- 257 (377)
Q Consensus 187 k~~~~l~~a~-~~l-~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~---~e~~~~---- 257 (377)
-|=+.+++++ +.+ ++.++++....+... . +..+|.-....+..++...+..+|++|...- .+..+.
T Consensus 12 ~GDe~~l~~~l~~l~~~~~~~v~s~~p~~~--~---~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~ 86 (298)
T TIGR03609 12 LGDEALLAALLRELPPGVEPTVLSNDPAET--A---KLYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLL 86 (298)
T ss_pred cchHHHHHHHHHhcCCCCeEEEecCChHHH--H---hhcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHH
Confidence 3445555554 333 678888777554322 1 1225655555555688889999999987532 121111
Q ss_pred ----HHHHHHhcCCCeEEecC
Q 017114 258 ----VVLEAMSSGIPVVGVRA 274 (377)
Q Consensus 258 ----~~~Ea~a~G~PvI~~~~ 274 (377)
...-|..+|+|++....
T Consensus 87 ~~~~~~~~a~~~~k~~~~~g~ 107 (298)
T TIGR03609 87 YYLGLMRLARLFGKPVILWGQ 107 (298)
T ss_pred HHHHHHHHHHHcCCCEEEEec
Confidence 22345678999987654
No 284
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=43.06 E-value=1.6e+02 Score=22.93 Aligned_cols=105 Identities=14% Similarity=0.231 Sum_probs=59.2
Q ss_pred eEEEEecCc-cHHHHHHhhcCC-CEEEcccc-CchhHHHHHh--cCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCC
Q 017114 203 RIAFIGDGP-YREELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~-~v~~~g~~-~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
++.++.+.+ ....+....... ........ +.++....+. ..|++++-.. .+.-+..+++.+....|||......
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~ 82 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHD 82 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCC
Confidence 455665443 233444444322 23222222 1234434443 3577777543 2334566777777778887553322
Q ss_pred C-C---ccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 277 I-P---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 277 ~-~---~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
. . ..+ ..+..+++..|.+.+++.+++..++.
T Consensus 83 ~~~~~~~~~---~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 83 SPALVEQAL---NAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 2 1 233 45677899999999999999998775
No 285
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=42.62 E-value=1.8e+02 Score=24.11 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=29.8
Q ss_pred hhHHHHHhcCCEEEeccC----------CcccchHHHHHHhcCCCeEEecCCC
Q 017114 234 EELSQAYASGDVFVMPSE----------SETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~----------~e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
++..+.+..||+++++-- ..++-..+-|+...|+|++.+..|.
T Consensus 71 ~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 71 ADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred hhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 556678889998776531 1233445778999999999876654
No 286
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=42.33 E-value=1.6e+02 Score=23.88 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=41.5
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHh-c-CCCeEEecCC
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS-S-GIPVVGVRAG 275 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a-~-G~PvI~~~~~ 275 (377)
+.+++|.+ ....+.+....+.......| .+..+..+.+|++++.-.++..+.++-|.-. . |+-||-..++
T Consensus 24 g~eV~igs-~r~~~~~~a~a~~l~~~i~~----~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 24 GHEVIIGS-SRGPKALAAAAAALGPLITG----GSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred CCeEEEec-CCChhHHHHHHHhhcccccc----CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 34444443 33344444444433333333 3566778899999998877877776665552 3 6888866555
No 287
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=41.96 E-value=29 Score=24.73 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=26.8
Q ss_pred HHHHhcCCEEEeccCC-cccchHHHH---HHhcCCCeEEecCCC
Q 017114 237 SQAYASGDVFVMPSES-ETLGLVVLE---AMSSGIPVVGVRAGG 276 (377)
Q Consensus 237 ~~~~~~adi~v~ps~~-e~~~~~~~E---a~a~G~PvI~~~~~~ 276 (377)
...+..||++|..... ..-+.+.+| |.+.|+||++.....
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~ 99 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDD 99 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCC
Confidence 4688999998876442 233455555 678999999765443
No 288
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=41.55 E-value=1.2e+02 Score=25.78 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=35.4
Q ss_pred HHHHhcCCEEEe-ccCCcccchHHHHHHhcCCCeEE----ecCCCCCccccccCCCCeeEEeCCC
Q 017114 237 SQAYASGDVFVM-PSESETLGLVVLEAMSSGIPVVG----VRAGGIPDIIPEDQDGKIGYLFNPG 296 (377)
Q Consensus 237 ~~~~~~adi~v~-ps~~e~~~~~~~Ea~a~G~PvI~----~~~~~~~~~~~~~~~~~~g~~~~~~ 296 (377)
+.-+..||++++ .|+..=.|++++=|+ .|.-|-- .+.+-..++.+.+...-.|+..+|.
T Consensus 138 ~~~l~~ADIiLvGVSRtsKTPlS~YLA~-~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~ 201 (269)
T PRK05339 138 PRGLDEADVILVGVSRTSKTPTSLYLAN-KGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPE 201 (269)
T ss_pred cCCcccCCEEEECcCCCCCcHHHHHHHc-cCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHH
Confidence 345678999777 577777899999998 7765542 2333333444221223347766443
No 289
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=41.49 E-value=85 Score=20.70 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=31.5
Q ss_pred CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 224 PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 224 ~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
-|.+...+..+++. +....=..++.......+-..+-|-.+|+|+|+.-
T Consensus 12 ~IlV~~~~~p~~~~-~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 12 VILVAEELTPSDLA-LDLQRVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp EEEEESS--TTCHH-SHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred EEEEECCCCHHHHh-cchhheEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 37777777777777 44443444455555566788899999999999764
No 290
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.30 E-value=1.9e+02 Score=23.40 Aligned_cols=93 Identities=15% Similarity=0.230 Sum_probs=52.1
Q ss_pred HhcCCEEEeccCCcccchHHHHHH-hcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHH-HHHH
Q 017114 240 YASGDVFVMPSESETLGLVVLEAM-SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE-LRET 317 (377)
Q Consensus 240 ~~~adi~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~~~~ 317 (377)
+-.||++++|.-... =.||+ -+|+-||+-|........ .... +.+ .+.+..++..++.--. ....
T Consensus 151 Iy~ADVVLvpLEDGD----RteaLv~mGK~ViaIDLNPLSRTa---r~As--ItI----VDnivRA~p~li~~~~em~~~ 217 (256)
T COG1701 151 IYSADVVLVPLEDGD----RTEALVRMGKTVIAIDLNPLSRTA---RKAS--ITI----VDNIVRAVPNLIEFVKEMKNA 217 (256)
T ss_pred ceeccEEEEecCCCc----HHHHHHHhCCeEEEEeCCcccccc---ccCc--eee----eHHHHHHHHHHHHHHHHHhcc
Confidence 346899999975221 22333 589999999887776654 2222 222 2456666666654221 1111
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017114 318 MGQAARQEMEKYDWRAATRTIRNEQYNA 345 (377)
Q Consensus 318 ~~~~~~~~~~~~s~~~~~~~~~~~ly~~ 345 (377)
-.+...+.+++|+-..+..+.+..+-+.
T Consensus 218 ~reel~~iv~~ydN~~~l~eal~~I~~r 245 (256)
T COG1701 218 SREELEEIVENYDNKEVLAEALKHIAER 245 (256)
T ss_pred CHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 2233444556788777777666444443
No 291
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.19 E-value=2.3e+02 Score=24.32 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=50.0
Q ss_pred hHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCCCCcc-cc---ccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 235 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDI-IP---EDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~-~~---~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.-..-++.||++|.-.. .|++=.+++....-+.++|.... ++..+ +. .....+.-+..+|.+...+++.|.+.+
T Consensus 59 ~d~~~l~~Adlvv~~G~~~E~wl~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~Ia~~L 137 (287)
T cd01137 59 SDIKKLSKADLILYNGLNLEPWLERLVKNAGKDVPVVAVSE-GIDPIPLEEGHYKGKPDPHAWMSPKNAIIYVKNIAKAL 137 (287)
T ss_pred HHHHHHHhCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecC-CccccccCccccCCCCCCCcCcCHHHHHHHHHHHHHHH
Confidence 44566788998886542 45555555555433445553321 11110 10 001123345566777777777777776
Q ss_pred h--CHHHHHHHHHHHHHHHH
Q 017114 310 Y--NQELRETMGQAARQEME 327 (377)
Q Consensus 310 ~--~~~~~~~~~~~~~~~~~ 327 (377)
. ||+......+++..+.+
T Consensus 138 ~~~dP~~~~~y~~N~~~~~~ 157 (287)
T cd01137 138 SEADPANAETYQKNAAAYKA 157 (287)
T ss_pred HHHCcccHHHHHHHHHHHHH
Confidence 5 67666666666665543
No 292
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=41.12 E-value=1.6e+02 Score=25.95 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=25.4
Q ss_pred hhHHHHHhcCCEEEe--ccCCccc---chHHHHHHhcCCCeE
Q 017114 234 EELSQAYASGDVFVM--PSESETL---GLVVLEAMSSGIPVV 270 (377)
Q Consensus 234 ~~~~~~~~~adi~v~--ps~~e~~---~~~~~Ea~a~G~PvI 270 (377)
+++.+++++||++++ |...|.- +-..+..|--|.-+|
T Consensus 189 ~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI 230 (324)
T COG0111 189 DSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILI 230 (324)
T ss_pred ccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE
Confidence 568999999999876 5544443 456777776666444
No 293
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=40.71 E-value=2.1e+02 Score=25.42 Aligned_cols=82 Identities=6% Similarity=0.021 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEc-------------cccCchhHHHHHhcCCEEEeccCCcccch
Q 017114 191 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFT-------------GMLLGEELSQAYASGDVFVMPSESETLGL 257 (377)
Q Consensus 191 ~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~-------------g~~~~~~~~~~~~~adi~v~ps~~e~~~~ 257 (377)
.+++++...++++++-+.+.. .+....++...+.... +..-..+...++..+|+++..+..+..--
T Consensus 15 ~va~al~~~~d~eLvav~d~~-~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVVIdaT~~~~~~e 93 (341)
T PRK04207 15 RVADAVAAQPDMELVGVAKTK-PDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIVVDATPGGVGAK 93 (341)
T ss_pred HHHHHHhcCCCcEEEEEECCC-hHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEEEECCCchhhHH
Confidence 466777767888877665532 2222222221111000 00011234455678999988765443344
Q ss_pred HHHHHHhcCCCeEEec
Q 017114 258 VVLEAMSSGIPVVGVR 273 (377)
Q Consensus 258 ~~~Ea~a~G~PvI~~~ 273 (377)
..-.+..+|++||.+.
T Consensus 94 ~a~~~~~aGk~VI~~~ 109 (341)
T PRK04207 94 NKELYEKAGVKAIFQG 109 (341)
T ss_pred HHHHHHHCCCEEEEcC
Confidence 4556788899998664
No 294
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=40.53 E-value=1.2e+02 Score=27.44 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCc-eEEEEecCccHHHHHHhhc---CCCEE--EccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHh
Q 017114 191 FLKRVMDRLPEA-RIAFIGDGPYREELEKMFT---GMPAV--FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 264 (377)
Q Consensus 191 ~l~~a~~~l~~~-~l~i~G~g~~~~~l~~~~~---~~~v~--~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 264 (377)
.+++.+.+..+. ++++.|... +.+++... ..++. ....-+.+++.++++.+|++|...-.-.....+--|+.
T Consensus 12 ~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~ 89 (386)
T PF03435_consen 12 AIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPVARACIE 89 (386)
T ss_dssp HHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHHHHHHHH
Confidence 344555555555 788887543 34444432 23433 33344456799999999999986643323345556778
Q ss_pred cCCCeEEe
Q 017114 265 SGIPVVGV 272 (377)
Q Consensus 265 ~G~PvI~~ 272 (377)
+|++.|-+
T Consensus 90 ~g~~yvD~ 97 (386)
T PF03435_consen 90 AGVHYVDT 97 (386)
T ss_dssp HT-EEEES
T ss_pred hCCCeecc
Confidence 89998863
No 295
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=40.49 E-value=77 Score=22.54 Aligned_cols=42 Identities=10% Similarity=-0.061 Sum_probs=30.9
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEE
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 84 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (377)
.+..+.+++...++|+|++..+...-......+...|+++++
T Consensus 50 ~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 50 VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE
Confidence 344577888888999999998876655555566677887665
No 296
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=40.40 E-value=1.3e+02 Score=26.17 Aligned_cols=151 Identities=16% Similarity=0.199 Sum_probs=83.8
Q ss_pred HHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccccccc
Q 017114 110 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 188 (377)
Q Consensus 110 ~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 188 (377)
..+....-|.++..+....+.+.+... . +-++.-++ |..-..-...- ..++ -.+.=+.... -
T Consensus 82 rql~~~~~dviv~i~tp~Aq~~~s~~~---~-iPVV~aavtd~v~a~Lv~~~---------~~pg-~NvTGvsD~~---~ 144 (322)
T COG2984 82 RQLVGDKPDVIVAIATPAAQALVSATK---T-IPVVFAAVTDPVGAKLVKSL---------EQPG-GNVTGVSDLL---P 144 (322)
T ss_pred HHhhcCCCcEEEecCCHHHHHHHHhcC---C-CCEEEEccCchhhccCCccc---------cCCC-CceeecCCcc---h
Confidence 344556678888888888887777643 1 22333333 22111111000 0011 1122222222 3
Q ss_pred HHHHHHHHHhC-CCce-E-EEEecCc-----cHHHHHHhhcCCCEEEccc-c-CchhHH----HHHhcCCEEEeccC---
Q 017114 189 LDFLKRVMDRL-PEAR-I-AFIGDGP-----YREELEKMFTGMPAVFTGM-L-LGEELS----QAYASGDVFVMPSE--- 251 (377)
Q Consensus 189 ~~~l~~a~~~l-~~~~-l-~i~G~g~-----~~~~l~~~~~~~~v~~~g~-~-~~~~~~----~~~~~adi~v~ps~--- 251 (377)
++.-+++++.+ |+++ + +++..++ ..+++++.++..++..... + +-.|+. .+....|++..|..
T Consensus 145 v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i 224 (322)
T COG2984 145 VAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLI 224 (322)
T ss_pred HHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHH
Confidence 56666666655 8765 3 4555543 3466777777666544332 1 224443 34467799988865
Q ss_pred CcccchHHHHHHhcCCCeEEecCCCC
Q 017114 252 SETLGLVVLEAMSSGIPVVGVRAGGI 277 (377)
Q Consensus 252 ~e~~~~~~~Ea~a~G~PvI~~~~~~~ 277 (377)
..++...+-+|...++|+++++.+..
T Consensus 225 ~s~~~~l~~~a~~~kiPli~sd~~~V 250 (322)
T COG2984 225 VSAIESLLQVANKAKIPLIASDTSSV 250 (322)
T ss_pred HHHHHHHHHHHHHhCCCeecCCHHHH
Confidence 24667778899999999999876544
No 297
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=40.34 E-value=1.2e+02 Score=20.85 Aligned_cols=90 Identities=22% Similarity=0.325 Sum_probs=51.4
Q ss_pred HHHHHhhcCCCE-EEccccCchhHHHHHhcC--CEEEeccCC-cccchHHHHHHh---cCCCeEE-ecCCC---CCcccc
Q 017114 214 EELEKMFTGMPA-VFTGMLLGEELSQAYASG--DVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VRAGG---IPDIIP 282 (377)
Q Consensus 214 ~~l~~~~~~~~v-~~~g~~~~~~~~~~~~~a--di~v~ps~~-e~~~~~~~Ea~a---~G~PvI~-~~~~~---~~~~~~ 282 (377)
+.++......++ .....-+.++....+... |++++-... ..-+..+++.+. .+.|+|. ++... ..+.+
T Consensus 12 ~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~- 90 (112)
T PF00072_consen 12 ELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEAL- 90 (112)
T ss_dssp HHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHH-
T ss_pred HHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHH-
Confidence 344444444445 333333445666665554 566665432 233445555543 3677764 33333 23344
Q ss_pred ccCCCCeeEEeCCCCHHHHHHHHH
Q 017114 283 EDQDGKIGYLFNPGDLDDCLSKLE 306 (377)
Q Consensus 283 ~~~~~~~g~~~~~~~~~~l~~~i~ 306 (377)
+.|-.+++..|.+.+++.++|+
T Consensus 91 --~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 91 --RAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp --HTTESEEEESSSSHHHHHHHHH
T ss_pred --HCCCCEEEECCCCHHHHHHhhC
Confidence 6677899999999999998874
No 298
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=39.70 E-value=1.3e+02 Score=25.26 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=47.2
Q ss_pred EEEccccCchhHHHHHhcCCEEEeccC---CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHH
Q 017114 225 AVFTGMLLGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 301 (377)
Q Consensus 225 v~~~g~~~~~~~~~~~~~adi~v~ps~---~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 301 (377)
+-..|..+.+.=..++++.++-++-+. ..|+.-|+--|..+|+|||.-+-+..+... ..+ .+.+++
T Consensus 171 iam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~---------~~~--~~~~e~ 239 (248)
T PRK08057 171 IALRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPALPYAD---------REF--EDVAEL 239 (248)
T ss_pred EEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCC---------ccc--CCHHHH
Confidence 456677776655677777666444333 225778999999999999987766432110 122 377777
Q ss_pred HHHHHHHh
Q 017114 302 LSKLEPLL 309 (377)
Q Consensus 302 ~~~i~~~~ 309 (377)
.+.+.+.+
T Consensus 240 ~~~l~~~~ 247 (248)
T PRK08057 240 VAWLRHLL 247 (248)
T ss_pred HHHHHHhh
Confidence 77776543
No 299
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=39.46 E-value=56 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=6.5
Q ss_pred chhHHHHHhcCCEEEec
Q 017114 233 GEELSQAYASGDVFVMP 249 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~p 249 (377)
.+++.++....++-|+.
T Consensus 74 ~~~v~~la~~~~i~vi~ 90 (105)
T PF07085_consen 74 SEEVLELAKELGIPVIS 90 (105)
T ss_dssp -HHHHHHHHHHT-EEEE
T ss_pred CHHHHHHHHHCCCEEEE
Confidence 34444444444444333
No 300
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=39.40 E-value=95 Score=26.02 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCEEEeC---C-------CchhHHHHHHHHHhhCCCEEEEeccC
Q 017114 46 RIISEVARFKPDIIHAS---S-------PGIMVFGALIIAKLLCVPIVMSYHTH 89 (377)
Q Consensus 46 ~~~~~i~~~~pDii~~~---~-------~~~~~~~~~~~~~~~~~~~i~~~h~~ 89 (377)
.+..++++.+||+|+.- + ......++.+-+...|+|-|...+..
T Consensus 74 al~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 74 GLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred HHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 45566666779999873 1 12234667778888999988766553
No 301
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=39.22 E-value=83 Score=21.98 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=38.1
Q ss_pred EEEEecCcc----HHHHHHhhcCCCEEE-ccccCchhHHHHHhcCCEEEeccCC-cccchHHHHHHhcCCCeEEec
Q 017114 204 IAFIGDGPY----REELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSES-ETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 204 l~i~G~g~~----~~~l~~~~~~~~v~~-~g~~~~~~~~~~~~~adi~v~ps~~-e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
++++|.|-. .+.+++.+++.++.+ .-..+..++...+..+|++++.... .-+...--.+-..|+||..-+
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 345565543 345555665554322 2234447888899999988765431 111211222335588998654
No 302
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=38.69 E-value=1.5e+02 Score=26.08 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=30.0
Q ss_pred hhHHHHHhcCCEEEe--ccCC---cccchHHHHHHhcCCCeEEecCCC
Q 017114 234 EELSQAYASGDVFVM--PSES---ETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 234 ~~~~~~~~~adi~v~--ps~~---e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
.++.+++++||++++ |... .-++-..++.|--|.-+|-+.-|+
T Consensus 192 ~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 192 CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 367889999999876 3332 235677888998887777554443
No 303
>PRK07579 hypothetical protein; Provisional
Probab=38.32 E-value=76 Score=26.49 Aligned_cols=82 Identities=7% Similarity=0.057 Sum_probs=41.3
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCccc
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETL 255 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~ 255 (377)
.|+++|. ..-+..-+...+++-.+..+.++|.+.....+....-+..++-+... .++..++...|++|+.++..-+
T Consensus 3 ~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~DliVvvayg~il 78 (245)
T PRK07579 3 TILVLTD--NVHAHALAVDLIARKNDMDVDYFCSFKSQTSFAKEIYQSPIKQLDVA--ERVAEIVERYDLVLSFHCKQRF 78 (245)
T ss_pred eEEEEcc--cHHHHHHHHHHHhhccCcceEEEEeccCCcccccccccccccCcchh--hhHHhhhcCCCEEEEchhhccC
Confidence 4666663 23456666666666667777777743222111111101111111111 3466677777777776654444
Q ss_pred chHHHH
Q 017114 256 GLVVLE 261 (377)
Q Consensus 256 ~~~~~E 261 (377)
|-.+++
T Consensus 79 p~~iL~ 84 (245)
T PRK07579 79 PAKLVN 84 (245)
T ss_pred CHHHHh
Confidence 555555
No 304
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=38.19 E-value=15 Score=22.41 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=13.7
Q ss_pred HHHhcCCCeEEecCCCCCccccccCCCCeeEEe--CCCCHHHHHHHHH
Q 017114 261 EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLF--NPGDLDDCLSKLE 306 (377)
Q Consensus 261 Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~l~~~i~ 306 (377)
-|...|+|+++....-..+.+ |.....+ +..++++|.++|+
T Consensus 10 ~A~~~~lp~~~gSDAH~~~~v-----G~~~t~~~~~~~s~~~l~~alr 52 (56)
T PF13263_consen 10 LAEKYGLPFTGGSDAHFLEEV-----GRGYTEFEGPIRSPEELLEALR 52 (56)
T ss_dssp HHHHTT--EEEE--BSSGGGT-----TTTHHHH---------------
T ss_pred HHHHcCCCeEeEEcccChhhc-----CCEeeecccccccccccccccc
Confidence 356789999987666555555 3332233 2345567776664
No 305
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=37.56 E-value=1.2e+02 Score=22.90 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=41.5
Q ss_pred CchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEec--CCCCCccccccCCCC----eeEEeCCCCHHHHHH
Q 017114 232 LGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVR--AGGIPDIIPEDQDGK----IGYLFNPGDLDDCLS 303 (377)
Q Consensus 232 ~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~--~~~~~~~~~~~~~~~----~g~~~~~~~~~~l~~ 303 (377)
+.++...++..||+++.+.. ..+.=-.+++....+.+++... .+..++.+ .+.. .|..+. |++.+.+
T Consensus 52 ~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l---~~~Gv~~v~g~~v~--d~~~~~~ 126 (147)
T PF04016_consen 52 PDEDAEEILPWADVVIITGSTLVNGTIDDILELARNAREVILYGPSAPLHPEAL---FDYGVTYVGGSRVV--DPEKVLR 126 (147)
T ss_dssp EGGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCGGS-GGGG---CCTT-SEEEEEEES---HHHHHH
T ss_pred CHHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCchhhHHHH---HhCCCCEEEEEEEe--CHHHHHH
Confidence 55788899999999998753 2222234666666566776543 44566555 2222 344444 7777777
Q ss_pred HHHH
Q 017114 304 KLEP 307 (377)
Q Consensus 304 ~i~~ 307 (377)
++.+
T Consensus 127 ~i~~ 130 (147)
T PF04016_consen 127 AISE 130 (147)
T ss_dssp HHCT
T ss_pred HHHc
Confidence 7644
No 306
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=37.50 E-value=1.2e+02 Score=32.61 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=54.3
Q ss_pred cccHHHHHHHHHhCCCceEEEEecCc--cHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH
Q 017114 186 EKSLDFLKRVMDRLPEARIAFIGDGP--YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 263 (377)
Q Consensus 186 ~k~~~~l~~a~~~l~~~~l~i~G~g~--~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 263 (377)
+-|++.+++.+++. ++.-+.+|.|. +-..|-++....+|.|+|.- ...+.. ..+-.+. .+=|.
T Consensus 123 yANVdlIvdiAe~~-~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP-~~aM~s------------LGDKI~S-TIvAQ 187 (2196)
T KOG0368|consen 123 YANVDLIVDIAERT-DVDAVWAGWGHASENPELPERLSANGIIFIGPP-ASAMRA------------LGDKIAS-TIIAQ 187 (2196)
T ss_pred cccHHHHHHHHHhc-ccceEeecccccccCcchHHHHHhcCcEEECCc-hHHHHH------------hcchHHH-HHHHH
Confidence 45789999998886 78888888663 33455555555567777763 122211 1222233 34489
Q ss_pred hcCCCeEEecCCCCCccccccCCCCeeEEeC
Q 017114 264 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN 294 (377)
Q Consensus 264 a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~ 294 (377)
+.|+|.+.....+..-.- .+...+++.-
T Consensus 188 sa~vPtlpWSGS~v~~~~---~~~~~~~v~V 215 (2196)
T KOG0368|consen 188 SAGVPTLPWSGSGVKVEH---IEDKTNLVSV 215 (2196)
T ss_pred hcCCCcccccCCcceeee---ecccCCeEec
Confidence 999999987655554322 3344455443
No 307
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=37.14 E-value=2.3e+02 Score=23.07 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=83.4
Q ss_pred CeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHH
Q 017114 118 DLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 197 (377)
Q Consensus 118 d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~ 197 (377)
+-|++.-+...+++++... .+..++...+-. .|.. ...+.+..+.+|-....-+.+.+=+||+
T Consensus 70 eei~tsl~aa~~~~~~~~l---rP~l~v~d~a~~-dF~g-------------idTs~pn~VViglape~F~y~~ln~AFr 132 (262)
T KOG3040|consen 70 EEIFTSLPAARQYLEENQL---RPYLIVDDDALE-DFDG-------------IDTSDPNCVVIGLAPEGFSYQRLNRAFR 132 (262)
T ss_pred HHhcCccHHHHHHHHhcCC---CceEEEcccchh-hCCC-------------ccCCCCCeEEEecCcccccHHHHHHHHH
Confidence 3466666666666666543 344455544322 2222 2233455666665555556666666666
Q ss_pred hC---CCceEEEEecCccHHHHHHhhcC-------------CCEEEccccCchhHHHHHhcCCEEEecc----CCcccch
Q 017114 198 RL---PEARIAFIGDGPYREELEKMFTG-------------MPAVFTGMLLGEELSQAYASGDVFVMPS----ESETLGL 257 (377)
Q Consensus 198 ~l---~~~~l~i~G~g~~~~~l~~~~~~-------------~~v~~~g~~~~~~~~~~~~~adi~v~ps----~~e~~~~ 257 (377)
.+ ++..|+-+|.|.+.+...-++-. ......|.-+..=....++.-- +-|. ..+....
T Consensus 133 vL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~g--v~p~~aVMIGDD~~d 210 (262)
T KOG3040|consen 133 VLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALG--VDPEEAVMIGDDLND 210 (262)
T ss_pred HHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcC--CChHHheEEcccccc
Confidence 55 55667777776654433322211 1234444432222222222221 1111 1223333
Q ss_pred HHHHHHhcCCCeEEecCCCCCc--cccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 258 VVLEAMSSGIPVVGVRAGGIPD--IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 258 ~~~Ea~a~G~PvI~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
-+.-|++||.--|....|-... .. +.. .-+....+.+++++..++++
T Consensus 211 DvgGAq~~GMrgilVkTGK~rpsDe~---k~~----~~p~~~~d~f~~AVd~I~q~ 259 (262)
T KOG3040|consen 211 DVGGAQACGMRGILVKTGKFRPSDEE---KPP----VPPDLTADNFADAVDLIIQN 259 (262)
T ss_pred chhhHhhhcceeEEeeccccCCcccc---cCC----CCcchhhhhHHHHHHHHHhh
Confidence 4566888888777766664433 11 111 11122467888888877654
No 308
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=36.75 E-value=1.7e+02 Score=26.08 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCceEEEEecCcc------HHHHHHhhcC--CCEEEcc--ccCchhHHHHHhc----CCEEEeccCC-c
Q 017114 189 LDFLKRVMDRLPEARIAFIGDGPY------REELEKMFTG--MPAVFTG--MLLGEELSQAYAS----GDVFVMPSES-E 253 (377)
Q Consensus 189 ~~~l~~a~~~l~~~~l~i~G~g~~------~~~l~~~~~~--~~v~~~g--~~~~~~~~~~~~~----adi~v~ps~~-e 253 (377)
....++.+++.|+-++++.|-|-+ ...+.+...+ .|+.++- .+...-+..++.. -|.++.|... -
T Consensus 124 pldAl~iA~~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~ 203 (369)
T TIGR00075 124 PMDALKIAKENPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVST 203 (369)
T ss_pred HHHHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEE
Confidence 556777777788888888775421 1122222211 2544332 2222345555544 3788888763 3
Q ss_pred ccchHHHHHHh--cCCCeEEecC
Q 017114 254 TLGLVVLEAMS--SGIPVVGVRA 274 (377)
Q Consensus 254 ~~~~~~~Ea~a--~G~PvI~~~~ 274 (377)
-.|...++.++ .|+|++.+..
T Consensus 204 I~G~~~y~~l~~~y~~P~VVaGF 226 (369)
T TIGR00075 204 IIGAKPYAPIAEKYKIPIVIAGF 226 (369)
T ss_pred EeccchhHHHHHHcCCCeEEecc
Confidence 45777777765 5788886543
No 309
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=36.73 E-value=1.7e+02 Score=26.17 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=41.0
Q ss_pred CceEEEEecCccHHHHHHhhc---C--C-----CEEEccccCchhHHHHHhcCCEEEec---cCCcccchHHHHHHhcC
Q 017114 201 EARIAFIGDGPYREELEKMFT---G--M-----PAVFTGMLLGEELSQAYASGDVFVMP---SESETLGLVVLEAMSSG 266 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~---~--~-----~v~~~g~~~~~~~~~~~~~adi~v~p---s~~e~~~~~~~Ea~a~G 266 (377)
+..+.|++.|.......+.++ + . ++..+-.++.+.+.+.++.++.++.. ....|+|..+.|.++-.
T Consensus 233 G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~ 311 (355)
T PTZ00182 233 GKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMED 311 (355)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 456667666654333322221 1 1 24456667777788999888877764 23568888888888664
No 310
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=36.69 E-value=29 Score=14.27 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=8.1
Q ss_pred hHHHHHHhcCC
Q 017114 257 LVVLEAMSSGI 267 (377)
Q Consensus 257 ~~~~Ea~a~G~ 267 (377)
-+++||+..|.
T Consensus 4 dsllealqtg~ 14 (15)
T PF06345_consen 4 DSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHccC
Confidence 36788888775
No 311
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=36.37 E-value=1.8e+02 Score=21.56 Aligned_cols=94 Identities=20% Similarity=0.163 Sum_probs=54.1
Q ss_pred CCCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhh--cCCCEEEccccCchhHHHHHh--cCCEEE
Q 017114 172 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMF--TGMPAVFTGMLLGEELSQAYA--SGDVFV 247 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~--~~~~v~~~g~~~~~~~~~~~~--~adi~v 247 (377)
++++.++.... .++++.+.+.++.+ +.+.+.+.+....+.+++.. ...++.+..-. +.+.++.. .+|+++
T Consensus 22 ~d~f~v~~Lsa---~~n~~~L~~q~~~f-~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~--~~l~~~~~~~~~D~vv 95 (129)
T PF02670_consen 22 PDKFEVVALSA---GSNIEKLAEQAREF-KPKYVVIADEEAYEELKKALPSKGPGIEVLSGP--EGLEELAEEPEVDIVV 95 (129)
T ss_dssp TTTEEEEEEEE---SSTHHHHHHHHHHH-T-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH--HHHHHHHTHTT-SEEE
T ss_pred CCceEEEEEEc---CCCHHHHHHHHHHh-CCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh--HHHHHHhcCCCCCEEE
Confidence 34555554433 67889898888888 44566666555556666655 23345433322 56666665 678887
Q ss_pred eccCCcccchHHHHHHhcCCCeEE
Q 017114 248 MPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
.....-..=...++|+..|+-+..
T Consensus 96 ~Ai~G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 96 NAIVGFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp E--SSGGGHHHHHHHHHTTSEEEE
T ss_pred EeCcccchHHHHHHHHHCCCeEEE
Confidence 655421111257788888877654
No 312
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=36.32 E-value=1e+02 Score=24.55 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=33.9
Q ss_pred EEEecCccHHHHHHhhcCCC--EEEccccCchhHHHHHhcCCEEEeccCC-----------cccchHHHHHHhcCCCeEE
Q 017114 205 AFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSES-----------ETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 205 ~i~G~g~~~~~l~~~~~~~~--v~~~g~~~~~~~~~~~~~adi~v~ps~~-----------e~~~~~~~Ea~a~G~PvI~ 271 (377)
+.+|+......+.+.....+ +.+.... ++ ...+|.+++|.-. .++-..+.++...|+||++
T Consensus 4 ~~y~~~gN~~~l~~~~~~~G~~~~~~~~~--~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlg 77 (194)
T cd01750 4 IRYPDISNFTDLDPLAREPGVDVRYVEVP--EG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLG 77 (194)
T ss_pred ecCCCccCHHHHHHHHhcCCceEEEEeCC--CC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEE
Confidence 34444344455555554443 3333322 33 4567777777532 1223356777788999987
Q ss_pred ec
Q 017114 272 VR 273 (377)
Q Consensus 272 ~~ 273 (377)
.-
T Consensus 78 iC 79 (194)
T cd01750 78 IC 79 (194)
T ss_pred EC
Confidence 53
No 313
>PLN02527 aspartate carbamoyltransferase
Probab=35.69 E-value=3e+02 Score=24.00 Aligned_cols=134 Identities=14% Similarity=0.235 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCeeEecCh--hHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEee
Q 017114 107 WLVIKFLHRAADLTLVPSV--AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVG 181 (377)
Q Consensus 107 ~~~~~~~~~~~d~ii~~s~--~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G 181 (377)
.-..+.+-+.+|.|++=.. ...+.+.+. ..+-||. +-+-...+|...-.+ ....+ +.-+...|.++|
T Consensus 87 ~Dta~vls~y~D~iviR~~~~~~~~~~a~~-----~~vPVIN-a~~g~~~HPtQ~LaDl~Ti~e~~--g~l~g~kva~vG 158 (306)
T PLN02527 87 EDTIRTVEGYSDIIVLRHFESGAARRAAAT-----AEIPVIN-AGDGPGQHPTQALLDVYTIQREI--GRLDGIKVGLVG 158 (306)
T ss_pred HHHHHHHHHhCcEEEEECCChhHHHHHHHh-----CCCCEEE-CCCCCCCChHHHHHHHHHHHHHh--CCcCCCEEEEEC
Confidence 3455667778998877443 334444433 2344554 433223344321111 11122 223568899999
Q ss_pred cccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 182 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 182 ~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
-....+-...++.++..+.++.+.+++...+ .+.+.+.+.+.+..+.- .+++.+.++.||++.....
T Consensus 159 D~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 159 DLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEE---SSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEE---EcCHHHHhCCCCEEEECCc
Confidence 7643345777888888877899999985332 23333333332322211 1578899999999887543
No 314
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=35.67 E-value=64 Score=24.00 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=20.5
Q ss_pred ccchHHHHHHhcCCCeE-EecCCCCCccc
Q 017114 254 TLGLVVLEAMSSGIPVV-GVRAGGIPDII 281 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI-~~~~~~~~~~~ 281 (377)
..+-.+-+-...|+||| +||...+++.+
T Consensus 64 ~~~evi~~I~~~G~PviVAtDV~p~P~~V 92 (138)
T PF04312_consen 64 SRSEVIEWISEYGKPVIVATDVSPPPETV 92 (138)
T ss_pred CHHHHHHHHHHcCCEEEEEecCCCCcHHH
Confidence 44555666678999985 77888888877
No 315
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=35.54 E-value=2.5e+02 Score=23.11 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=27.1
Q ss_pred CEEEeccCCcccchHHHHHHhcCCCeEEe-cCCCCCccc
Q 017114 244 DVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPDII 281 (377)
Q Consensus 244 di~v~ps~~e~~~~~~~Ea~a~G~PvI~~-~~~~~~~~~ 281 (377)
|++|.....|. ..+++||.-+++|+|+- |....++++
T Consensus 175 D~vvvln~~e~-~sAilEA~K~~IPTIgIVDtN~~P~li 212 (251)
T KOG0832|consen 175 DLVVVLNPEEN-HSAILEAAKMAIPTIGIVDTNCNPELI 212 (251)
T ss_pred ceeEecCcccc-cHHHHHHHHhCCCeEEEecCCCCccce
Confidence 78777665443 46899999999999965 555566665
No 316
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=35.51 E-value=1.2e+02 Score=26.63 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=48.5
Q ss_pred CCCEEEccccCchhHH--HHHhcCCEEEeccCCcc-cchHHHHH-----HhcCCCeEEe--cCCCCCccccccCCCCeeE
Q 017114 222 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGY 291 (377)
Q Consensus 222 ~~~v~~~g~~~~~~~~--~~~~~adi~v~ps~~e~-~~~~~~Ea-----~a~G~PvI~~--~~~~~~~~~~~~~~~~~g~ 291 (377)
..++...|.+|.+.+. ......|++|.-+..-| .|.|++.. +..|+|+|-| |.|..-++. +. |
T Consensus 237 ~~g~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA-----Gk-g- 309 (332)
T PRK03743 237 EMGINVEGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFDIA-----GT-G- 309 (332)
T ss_pred HCCCcccCCCCchhhcccccccCCCEEEEcccccCChhheecccCCceEEecCCCeeEeCCCCcchhhhh-----cC-C-
Confidence 3467778999877653 34466899887665332 25554433 4679999855 455555554 21 2
Q ss_pred EeCCCCHHHHHHHHHHH
Q 017114 292 LFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 292 ~~~~~~~~~l~~~i~~~ 308 (377)
--|+.++.++|...
T Consensus 310 ---~A~~~S~~~Ai~lA 323 (332)
T PRK03743 310 ---KASSVSMEEAILLA 323 (332)
T ss_pred ---CCCHHHHHHHHHHH
Confidence 23788899998765
No 317
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=35.24 E-value=1.1e+02 Score=26.82 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=27.3
Q ss_pred chhHHHHHhcCCEEEecc--CCc---ccchHHHHHHhcCCCeEEec
Q 017114 233 GEELSQAYASGDVFVMPS--ESE---TLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~ps--~~e---~~~~~~~Ea~a~G~PvI~~~ 273 (377)
..++.+++..||++++.. ..+ -++...++.|--|.-+|-..
T Consensus 181 ~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 181 REELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred cccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 357889999999988743 222 23456777887776566443
No 318
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=35.22 E-value=1.7e+02 Score=25.01 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCCceEEEE-ecCcc-HHHHHHhhcCCCEEEccccC-chhHHHHHhc-CC-EEEeccCCcccchHHHHHH
Q 017114 189 LDFLKRVMDRLPEARIAFI-GDGPY-REELEKMFTGMPAVFTGMLL-GEELSQAYAS-GD-VFVMPSESETLGLVVLEAM 263 (377)
Q Consensus 189 ~~~l~~a~~~l~~~~l~i~-G~g~~-~~~l~~~~~~~~v~~~g~~~-~~~~~~~~~~-ad-i~v~ps~~e~~~~~~~Ea~ 263 (377)
-..+.+++.. +++.|+=. .+++. .+.+..+. ...|...|.-. ..++..++.. +| ++|=-|..+..-..+--+.
T Consensus 13 G~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~-g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~ 90 (275)
T TIGR02130 13 GKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVA-GKEILLHGPSEREARIGEVFAKYPELICIDYTHPSAVNDNAAFYG 90 (275)
T ss_pred HHHHHHHHhc-CCCEEEeeEccccccccchhhhc-ccceeeeccccccccHHHHHhhcCCEEEEECCChHHHHHHHHHHH
Confidence 4556777776 77776633 22221 11222221 11455544322 2567777776 89 7776666555555567788
Q ss_pred hcCCCeEEecCCCCCcccccc-CCCCeeEEeCCC
Q 017114 264 SSGIPVVGVRAGGIPDIIPED-QDGKIGYLFNPG 296 (377)
Q Consensus 264 a~G~PvI~~~~~~~~~~~~~~-~~~~~g~~~~~~ 296 (377)
..|+|+|.-..|...+.+..- +....+.++.|+
T Consensus 91 ~~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apN 124 (275)
T TIGR02130 91 KHGIPFVMGTTGGDREALAKLVADAKHPAVIAPN 124 (275)
T ss_pred HCCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECc
Confidence 999999977666544332110 223356666553
No 319
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=35.01 E-value=2e+02 Score=21.72 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=36.6
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhC-CCceEEEEecCccHHHHHHhhcC-CCEEEcc
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTG-MPAVFTG 229 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l-~~~~l~i~G~g~~~~~l~~~~~~-~~v~~~g 229 (377)
..++++...+-+.......++..++.. |+-+++++|-|-....++.+-.. .++.+..
T Consensus 60 ~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~ 118 (142)
T PF07801_consen 60 SDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRK 118 (142)
T ss_pred CccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEE
Confidence 344555544444445555666666644 99999999988777777776554 5665544
No 320
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=34.85 E-value=1.6e+02 Score=24.28 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=48.8
Q ss_pred HHHHHHhC-CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeE
Q 017114 192 LKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 192 l~~a~~~l-~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
+++.++.- -++.++++-+.. .+..+.+... .+.....++.+++...|++|=....+..---..+++..|+.+|
T Consensus 15 l~e~v~~~~~~~e~v~v~D~~-~ek~~~~~~~-----~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~i 88 (255)
T COG1712 15 LLELVRDGRVDFELVAVYDRD-EEKAKELEAS-----VGRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVI 88 (255)
T ss_pred HHHHHhcCCcceeEEEEecCC-HHHHHHHHhh-----cCCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEE
Confidence 44544443 246666666433 3333333322 1222226788888999999855444444445677889999999
Q ss_pred EecCCCCC
Q 017114 271 GVRAGGIP 278 (377)
Q Consensus 271 ~~~~~~~~ 278 (377)
.-.+|...
T Consensus 89 V~SVGALa 96 (255)
T COG1712 89 VMSVGALA 96 (255)
T ss_pred EEechhcc
Confidence 88887665
No 321
>PRK11579 putative oxidoreductase; Provisional
Probab=34.71 E-value=2.8e+02 Score=24.51 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=52.1
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES 252 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~ 252 (377)
..+..+|--.- +-...++++...++++++-+.+.. .+...+.. ..+. -..++.++++. .|+++..+..
T Consensus 5 irvgiiG~G~i--~~~~~~~~~~~~~~~~l~av~d~~-~~~~~~~~--~~~~-----~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYA--SKTFHAPLIAGTPGLELAAVSSSD-ATKVKADW--PTVT-----VVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHH--HHHHHHHHHhhCCCCEEEEEECCC-HHHHHhhC--CCCc-----eeCCHHHHhcCCCCCEEEEcCCc
Confidence 45677764221 112346677777888887665433 22222110 0111 12566777764 6888877655
Q ss_pred cccchHHHHHHhcCCCeEEe
Q 017114 253 ETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~ 272 (377)
....-.+.+|+..|++|++-
T Consensus 75 ~~H~~~~~~al~aGkhVl~E 94 (346)
T PRK11579 75 DTHFPLAKAALEAGKHVVVD 94 (346)
T ss_pred HHHHHHHHHHHHCCCeEEEe
Confidence 55556788899999999974
No 322
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=34.69 E-value=2e+02 Score=22.11 Aligned_cols=58 Identities=29% Similarity=0.339 Sum_probs=43.0
Q ss_pred CCcccchHHHHHHhcCCC----eEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHH
Q 017114 251 ESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~P----vI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 308 (377)
...+.|+.++|++....+ ||.+..+++..-++.-+-|-+-++..|.|.+++..++.+-
T Consensus 63 L~~gsGL~~i~~lr~~~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 63 LGDGSGLAVIEALRERRADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred ecCCCchHHHHHHHhcCCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 356889999999987755 6667776654443222567777899999999999998765
No 323
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.63 E-value=1.4e+02 Score=27.21 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCCCEEEeC---CCchhHHHHHH----HHHhhCCCEEEEecc
Q 017114 44 SPRIISEVARFKPDIIHAS---SPGIMVFGALI----IAKLLCVPIVMSYHT 88 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~---~~~~~~~~~~~----~~~~~~~~~i~~~h~ 88 (377)
..++.+++++.+||++++- +..-.+.++.. .....++|.+..++.
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaMy~ 116 (431)
T TIGR01917 65 KAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAMYE 116 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEecc
Confidence 3678999999999999984 22223332222 344589999987754
No 324
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=34.58 E-value=1e+02 Score=23.67 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=33.2
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccC
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 89 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 89 (377)
.+...+.+.+++.+||+|++.......-.+..++-+.+.|++....+.
T Consensus 77 ~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~l 124 (164)
T PF01012_consen 77 AYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTDL 124 (164)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEEE
Confidence 345678888999999999997754443344557778899998877654
No 325
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=34.58 E-value=1.9e+02 Score=24.42 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=25.7
Q ss_pred HHHHHhcCCEEEe-ccCCcccchHHHHHHhcCCCeE
Q 017114 236 LSQAYASGDVFVM-PSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 236 ~~~~~~~adi~v~-ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
-..-+..||++++ .|+..=.|++++=|+ .|.-|.
T Consensus 131 ~~~~l~~ADivLvGVSRtsKTPlS~YLA~-~G~KvA 165 (255)
T PF03618_consen 131 NPRGLDEADIVLVGVSRTSKTPLSMYLAN-KGYKVA 165 (255)
T ss_pred CccccccCCEEEEcccccCCCchhHHHHh-cCccee
Confidence 4455778999777 577777899999898 786554
No 326
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=34.42 E-value=2.1e+02 Score=21.90 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=24.9
Q ss_pred HhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC
Q 017114 240 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 277 (377)
Q Consensus 240 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 277 (377)
+..+|+++..+..+.....+.+....+.+|-..+.+..
T Consensus 68 l~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~~~~ 105 (157)
T PRK06719 68 IKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSDGTE 105 (157)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCCCCc
Confidence 57789888887666666666665555666665554443
No 327
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=34.14 E-value=1.4e+02 Score=27.13 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred hHHHHHHHHhcCCCEEEeC---CCchhHHHHH----HHHHhhCCCEEEEecc
Q 017114 44 SPRIISEVARFKPDIIHAS---SPGIMVFGAL----IIAKLLCVPIVMSYHT 88 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~---~~~~~~~~~~----~~~~~~~~~~i~~~h~ 88 (377)
..++.+++++.+||++++- +..-.+.++. ......++|.+..++.
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~My~ 116 (431)
T TIGR01918 65 VARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSMYV 116 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEecc
Confidence 3678999999999999984 2222333222 2344589999987754
No 328
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=33.94 E-value=1.3e+02 Score=25.06 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=20.3
Q ss_pred chHHHHHHhcCCCeEEe-cCCCCCccc
Q 017114 256 GLVVLEAMSSGIPVVGV-RAGGIPDII 281 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~~-~~~~~~~~~ 281 (377)
-..+.||--+|+|||+- |..+-++.+
T Consensus 169 ~iAv~EA~klgIPVvAlvDTn~dpd~V 195 (252)
T COG0052 169 KIAVKEANKLGIPVVALVDTNCDPDGV 195 (252)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCccC
Confidence 46799999999999976 555556655
No 329
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=33.83 E-value=2.6e+02 Score=22.70 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhC--CCceEEEEecCc--c---HHHHHHhhcCC-C--EEEccccCchhHHHHHhcCCEEEeccCC-----
Q 017114 188 SLDFLKRVMDRL--PEARIAFIGDGP--Y---REELEKMFTGM-P--AVFTGMLLGEELSQAYASGDVFVMPSES----- 252 (377)
Q Consensus 188 ~~~~l~~a~~~l--~~~~l~i~G~g~--~---~~~l~~~~~~~-~--v~~~g~~~~~~~~~~~~~adi~v~ps~~----- 252 (377)
+.+.+.+.+... ++.++.++.... . .....+...+. + +......+.++..+.+..||++++|--.
T Consensus 16 ~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~ 95 (212)
T cd03146 16 ALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLL 95 (212)
T ss_pred chHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHH
Confidence 444555555554 356666666332 1 12223333333 3 2222222245667888999999988520
Q ss_pred -----cccchHHHHHHhcCCCeEEecCC
Q 017114 253 -----ETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 253 -----e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
.++-..+-++...|+|++.+..|
T Consensus 96 ~~l~~~~l~~~l~~~~~~g~~i~G~SAG 123 (212)
T cd03146 96 AQWREHGLDAILKAALERGVVYIGWSAG 123 (212)
T ss_pred HHHHHcCHHHHHHHHHHCCCEEEEECHh
Confidence 12334455667789999977554
No 330
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=33.71 E-value=83 Score=21.70 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=36.1
Q ss_pred EEEecCcc----HHHHHHhhcCCCEEE-ccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH--hcCCCeEEecCC
Q 017114 205 AFIGDGPY----REELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM--SSGIPVVGVRAG 275 (377)
Q Consensus 205 ~i~G~g~~----~~~l~~~~~~~~v~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~--a~G~PvI~~~~~ 275 (377)
+++|.|-. .+.+++.+++.++.+ ....+..++......+|++++..... +-..-++.. ..|+||..-+..
T Consensus 8 l~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 8 LLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred EECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeChh
Confidence 44555532 234445555444322 12233356777788899888754321 122233333 457899876543
No 331
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=33.49 E-value=2.6e+02 Score=22.61 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=45.4
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccc-hHHHHHHhcCCCeEEecCCCCCc
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG-LVVLEAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~-~~~~Ea~a~G~PvI~~~~~~~~~ 279 (377)
+..++++.... .+.+..+....++.+...-.. ...+..+|+++..+...... ...-+|-..|+||-+.+.+...+
T Consensus 32 ga~VtVvsp~~-~~~l~~l~~~~~i~~~~~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~ 107 (205)
T TIGR01470 32 GAQLRVIAEEL-ESELTLLAEQGGITWLARCFD---ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS 107 (205)
T ss_pred CCEEEEEcCCC-CHHHHHHHHcCCEEEEeCCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe
Confidence 56777776433 356666666557766443211 33467788877655433232 34556668899997777665444
Q ss_pred cc
Q 017114 280 II 281 (377)
Q Consensus 280 ~~ 281 (377)
++
T Consensus 108 f~ 109 (205)
T TIGR01470 108 FI 109 (205)
T ss_pred EE
Confidence 43
No 332
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=33.32 E-value=1.8e+02 Score=25.04 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=24.2
Q ss_pred chhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeE
Q 017114 233 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
.+++.+.+.++|+++......-.+...++.|.-|.-+|
T Consensus 200 ~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliI 237 (287)
T TIGR02853 200 LNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVII 237 (287)
T ss_pred HHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEE
Confidence 36788899999999986532223444566665554443
No 333
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=33.18 E-value=97 Score=27.87 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=47.9
Q ss_pred ecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCCCCc
Q 017114 208 GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 208 G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~ 279 (377)
|.++...+.+...++ ....++.+|-.+++..+.-+.+.|. +-+|+-.+.+|..+|+-.|+.+.|...+
T Consensus 496 ~e~~~~~~~~~~fe~----~p~~~t~~e~~ewl~~l~~v~l~SDAFFPF~Dnv~ra~qsGv~yiaaP~GSv~D 564 (588)
T KOG2555|consen 496 GEDPELSQWESKFEE----VPEPLTKEERKEWLEKLKGVSLSSDAFFPFPDNVYRAVQSGVKYIAAPSGSVMD 564 (588)
T ss_pred ccCcchhhhhhhhhh----cccccChHHHHHHHHHhcCceecccccccCchHHHHHHhcCCeEEecCCCcchh
Confidence 345555555555443 2344556778888888765555553 6688999999999999999998887654
No 334
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=33.06 E-value=56 Score=23.36 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=29.8
Q ss_pred hhHHHHHh--cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC
Q 017114 234 EELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 277 (377)
Q Consensus 234 ~~~~~~~~--~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 277 (377)
.++.+++. ..|++|=....+....-+.+++..|+.||+.+.+..
T Consensus 49 ~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~al 94 (117)
T PF03447_consen 49 TDLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGAL 94 (117)
T ss_dssp SSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHH
T ss_pred CCHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHHh
Confidence 35555666 799999776566666678899999999997765433
No 335
>PRK09190 hypothetical protein; Provisional
Probab=33.02 E-value=1.9e+02 Score=23.74 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=52.9
Q ss_pred cHHHHHHHHHhCCCceEEEEec---CccHHHHHHhhcC------CCEEEccccCchhHHHHHhcCCEEEeccCCcccchH
Q 017114 188 SLDFLKRVMDRLPEARIAFIGD---GPYREELEKMFTG------MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 258 (377)
Q Consensus 188 ~~~~l~~a~~~l~~~~l~i~G~---g~~~~~l~~~~~~------~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~ 258 (377)
|.+.+.++++.- .+.++|+.. ....+.+..+... .+|.+....+.+++-..+......+..-...+|...
T Consensus 115 G~~~V~~alk~g-k~~Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~~~tk~eLg~AlGr~~~~~vav~d~gfA~~ 193 (220)
T PRK09190 115 GFEKVDAALRSG-EAAALIHASDGAADGKRKLDQARRALVHETGREIPVIGLFTAAELGLAFGRENVIHAALLAGGAAER 193 (220)
T ss_pred cHHHHHHHHHcC-CceEEEEeccCChhHHHHHHHHHHhhcccccCCccEEEecCHHHHHHHhCCCceeEEEEcChHHHHH
Confidence 567777777664 577777763 2345566666655 567777777889999999987776666566677777
Q ss_pred HHHHHh
Q 017114 259 VLEAMS 264 (377)
Q Consensus 259 ~~Ea~a 264 (377)
+++.+.
T Consensus 194 l~~~~~ 199 (220)
T PRK09190 194 VVKRAQ 199 (220)
T ss_pred HHHHHH
Confidence 766553
No 336
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=32.63 E-value=45 Score=24.14 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCceEEEEe-cCc-cHHHHHHhhc---C-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH
Q 017114 190 DFLKRVMDRLPEARIAFIG-DGP-YREELEKMFT---G-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 263 (377)
Q Consensus 190 ~~l~~a~~~l~~~~l~i~G-~g~-~~~~l~~~~~---~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 263 (377)
..+++.+...|++.++.+. ... ....+..... . ..+.+.. . +. ..+..+|++++....+...-..-.++
T Consensus 13 ~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~Dvvf~a~~~~~~~~~~~~~~ 87 (121)
T PF01118_consen 13 RELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-A---DP-EELSDVDVVFLALPHGASKELAPKLL 87 (121)
T ss_dssp HHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE-T---SG-HHHTTESEEEE-SCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee-c---ch-hHhhcCCEEEecCchhHHHHHHHHHh
Confidence 3456777778998876654 332 1222222221 1 1122222 1 22 23489999988765433344444556
Q ss_pred hcCCCeE
Q 017114 264 SSGIPVV 270 (377)
Q Consensus 264 a~G~PvI 270 (377)
..|+.||
T Consensus 88 ~~g~~Vi 94 (121)
T PF01118_consen 88 KAGIKVI 94 (121)
T ss_dssp HTTSEEE
T ss_pred hCCcEEE
Confidence 8888776
No 337
>PRK07574 formate dehydrogenase; Provisional
Probab=32.50 E-value=1.3e+02 Score=27.15 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=28.9
Q ss_pred hhHHHHHhcCCEEEecc--CCc---ccchHHHHHHhcCCCeEEecCC
Q 017114 234 EELSQAYASGDVFVMPS--ESE---TLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps--~~e---~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
.++.++++.||++++.. ..+ -++-..+..|.-|.-+|-+.-|
T Consensus 240 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 286 (385)
T PRK07574 240 VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARG 286 (385)
T ss_pred CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCC
Confidence 46788999999987643 222 3456788888888777755444
No 338
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=32.41 E-value=2.2e+02 Score=25.09 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=47.5
Q ss_pred CCCEEEccccCchhHH--HHHhcCCEEEeccCCcc-cchHHHHH-----HhcCCCeEEe--cCCCCCccccccCCCCeeE
Q 017114 222 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGY 291 (377)
Q Consensus 222 ~~~v~~~g~~~~~~~~--~~~~~adi~v~ps~~e~-~~~~~~Ea-----~a~G~PvI~~--~~~~~~~~~~~~~~~~~g~ 291 (377)
..++...|.+|.+.+. ....+.|++|.-+..-| .|.|++.. +..|+|+|-| |.|..-++. +. |
T Consensus 236 ~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA-----Gk-G- 308 (326)
T PRK03371 236 AKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIA-----WT-G- 308 (326)
T ss_pred HCCCcccCCCCchhhcccccccCCCEEEEccccccchhheecccccceEEecCCCeeEecCCCCchhhhh-----cC-C-
Confidence 3467778999877653 33456899887654322 24444432 4679999855 455555554 22 2
Q ss_pred EeCCCCHHHHHHHHHHH
Q 017114 292 LFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 292 ~~~~~~~~~l~~~i~~~ 308 (377)
--|+.++.++|...
T Consensus 309 ---~A~~~S~~~Ai~lA 322 (326)
T PRK03371 309 ---KAKSESMAVSIKLA 322 (326)
T ss_pred ---cCCHHHHHHHHHHH
Confidence 22788898888755
No 339
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=32.40 E-value=1.9e+02 Score=21.26 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=37.2
Q ss_pred CeEEEeecccc-cccHHHHHHHHHhCCCceEEEE--ecCccHHHHHHhhcCC---CEEEccccCchhHHHHHhcCCEEEe
Q 017114 175 PLIVHVGRLGV-EKSLDFLKRVMDRLPEARIAFI--GDGPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVM 248 (377)
Q Consensus 175 ~~i~~~G~~~~-~k~~~~l~~a~~~l~~~~l~i~--G~g~~~~~l~~~~~~~---~v~~~g~~~~~~~~~~~~~adi~v~ 248 (377)
.-++.+|.... ....+.+.+.++++ ++.+.-. |.+. ..+. .+-+.|........+++.+||++|.
T Consensus 13 rP~il~G~g~~~~~a~~~l~~lae~~-~~Pv~~t~~~kg~--------i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~ 83 (137)
T PF00205_consen 13 RPVILAGRGARRSGAAEELRELAEKL-GIPVATTPMGKGV--------IPEDHPLFLGYLGLFGSPAANEALEQADLVLA 83 (137)
T ss_dssp SEEEEE-HHHHHTTCHHHHHHHHHHH-TSEEEEEGGGTTS--------STTTSTTEEEESCGGSCHHHHHHHHHSSEEEE
T ss_pred CEEEEEcCCcChhhHHHHHHHHHHHH-CCCEEecCccccc--------cCCCCchhcccCCccCCHHHHHHhcCCCEEEE
Confidence 34555565433 34456666666655 3333222 2221 1111 2445667677889999999999887
Q ss_pred cc
Q 017114 249 PS 250 (377)
Q Consensus 249 ps 250 (377)
--
T Consensus 84 iG 85 (137)
T PF00205_consen 84 IG 85 (137)
T ss_dssp ES
T ss_pred EC
Confidence 43
No 340
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=32.34 E-value=86 Score=24.15 Aligned_cols=39 Identities=31% Similarity=0.253 Sum_probs=27.1
Q ss_pred hHHHHHhcCCEEEeccCCcccch--HHHHHHhcCCCeEEecCC
Q 017114 235 ELSQAYASGDVFVMPSESETLGL--VVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~~e~~~~--~~~Ea~a~G~PvI~~~~~ 275 (377)
.-.-+...||++|... .++|+ -++|++..++||+.-+..
T Consensus 84 Rk~~m~~~sda~Ivlp--GG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 84 RNFILVRSADVVVSVG--GGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred HHHHHHHHCCEEEEcC--CchhHHHHHHHHHHcCCCEEEEECC
Confidence 4445677799877653 24443 588999999999766543
No 341
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=32.22 E-value=4.1e+02 Score=24.70 Aligned_cols=83 Identities=11% Similarity=0.209 Sum_probs=45.1
Q ss_pred cccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCC--CE-EEccccCchhHHHHHhc--CCEEEeccCC-cccchHH
Q 017114 186 EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM--PA-VFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVV 259 (377)
Q Consensus 186 ~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~--~v-~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~ 259 (377)
.++++.+.+.++++. .+.+.+++......++...... .+ .+.|. +.+.++... +|++|..... .|. ...
T Consensus 92 g~Ni~lL~~q~~~f~-p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~---egl~~la~~~evDiVV~AIvG~aGL-~pT 166 (454)
T PLN02696 92 GSNVTLLADQVRKFK-PKLVAVRNESLVDELKEALADLDDKPEIIPGE---EGIVEVARHPEAVTVVTGIVGCAGL-KPT 166 (454)
T ss_pred CCCHHHHHHHHHHhC-CCEEEEcCHHHHHHHHHhhcCCCCCcEEEECH---HHHHHHHcCCCCCEEEEeCccccch-HHH
Confidence 345666666666652 2444455443344444433221 12 22332 567777664 4777765543 233 245
Q ss_pred HHHHhcCCCeEEec
Q 017114 260 LEAMSSGIPVVGVR 273 (377)
Q Consensus 260 ~Ea~a~G~PvI~~~ 273 (377)
++|+.+|+.|...+
T Consensus 167 l~AIkaGK~VALAN 180 (454)
T PLN02696 167 VAAIEAGKDIALAN 180 (454)
T ss_pred HHHHHCCCcEEEec
Confidence 99999999987654
No 342
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=32.00 E-value=2.2e+02 Score=26.23 Aligned_cols=133 Identities=13% Similarity=0.162 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCeeEecCh--hHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhC-C-CCCCCeEEEe
Q 017114 108 LVIKFLHRAADLTLVPSV--AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSN-G-EPDKPLIVHV 180 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~~s~--~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~-~-~~~~~~i~~~ 180 (377)
-..+.+-+.+|.+++=.. ...+.+.+. ..+-||. +-|.+..+|...-.+ ....++. + .-+...|+++
T Consensus 174 DTarvLs~y~D~IviR~~~~~~~~e~A~~-----s~vPVIN-Agdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~v 247 (429)
T PRK11891 174 DTSRVMSGYVDALVIRHPEQGSVAEFARA-----TNLPVIN-GGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALV 247 (429)
T ss_pred HHHHHHHHhCCEEEEeCCchhHHHHHHHh-----CCCCEEE-CCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEE
Confidence 455667778998887543 334444443 2344554 544334444322111 1112210 1 1245789999
Q ss_pred ecccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCC--EEEccccCchhHHHHHhcCCEEEeccC
Q 017114 181 GRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 181 G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~--v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
|-....+-...++.++..+.++.+.+++...+ .+.+.+.+.+.+ +.+ .+++.+.+..||++...+.
T Consensus 248 GD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~-----~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 248 GDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQ-----TDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEE-----EcCHHHHhCCCCEEEEcCc
Confidence 97744455677788877777889999985332 233333333222 222 2678899999999887553
No 343
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=31.93 E-value=1.1e+02 Score=23.62 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=33.0
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccC
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 89 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 89 (377)
.+...+.+.+++.+||+|++.+.....-.+-.++-+.|.+++.+.-+.
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l 117 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTAL 117 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEEE
Confidence 334567777888899999987654333333447777899988776654
No 344
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=31.82 E-value=2.4e+02 Score=21.66 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=45.1
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCcc--H---HHH---HHhhc--CCCEEEccccCchhHHHHHhcC
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--R---EEL---EKMFT--GMPAVFTGMLLGEELSQAYASG 243 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~---~~l---~~~~~--~~~v~~~g~~~~~~~~~~~~~a 243 (377)
...++++|. ....-...++.++..+ +..+.+++.... . +.+ ++.+. ...+.+. +++.+.++.|
T Consensus 2 gl~i~~vGD-~~~rv~~Sl~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-----~~~~e~l~~a 74 (158)
T PF00185_consen 2 GLKIAYVGD-GHNRVAHSLIELLAKF-GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT-----DDIEEALKGA 74 (158)
T ss_dssp TEEEEEESS-TTSHHHHHHHHHHHHT-TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE-----SSHHHHHTT-
T ss_pred CCEEEEECC-CCChHHHHHHHHHHHc-CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE-----eCHHHhcCCC
Confidence 356899996 4445577888888888 566888884331 1 122 22222 1234443 5788899999
Q ss_pred CEEEeccCC
Q 017114 244 DVFVMPSES 252 (377)
Q Consensus 244 di~v~ps~~ 252 (377)
|++......
T Consensus 75 Dvvy~~~~~ 83 (158)
T PF00185_consen 75 DVVYTDRWQ 83 (158)
T ss_dssp SEEEEESSS
T ss_pred CEEEEcCcc
Confidence 998877654
No 345
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=31.66 E-value=2.8e+02 Score=22.54 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=49.0
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHH-HHHhcCCCeEEecCCCCCc
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~PvI~~~~~~~~~ 279 (377)
+.+++++.... .+++..++.+.++.+.. .+--...+..+++++..+..+...-.+. .|-..|+||=+.|.+...+
T Consensus 35 ga~v~Vvs~~~-~~el~~~~~~~~i~~~~---~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~~~ 110 (210)
T COG1648 35 GADVTVVSPEF-EPELKALIEEGKIKWIE---REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPELCD 110 (210)
T ss_pred CCEEEEEcCCc-cHHHHHHHHhcCcchhh---cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCcccCc
Confidence 67788887655 67788887766644333 1222233444888888776656655544 5557799998888776544
Q ss_pred cc
Q 017114 280 II 281 (377)
Q Consensus 280 ~~ 281 (377)
++
T Consensus 111 f~ 112 (210)
T COG1648 111 FI 112 (210)
T ss_pred ee
Confidence 43
No 346
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=31.21 E-value=2.8e+02 Score=22.35 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=30.6
Q ss_pred CchhHHHHHhcCCEEEeccC---------Cc-ccchHHHHHHhcCCCeEEecCCC
Q 017114 232 LGEELSQAYASGDVFVMPSE---------SE-TLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 232 ~~~~~~~~~~~adi~v~ps~---------~e-~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
+.+++.+.+..||+++++-- .+ +.-..+.+....|.|++.+.-|.
T Consensus 70 ~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 70 NDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGA 124 (210)
T ss_pred CCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHH
Confidence 34678888899998887641 11 13335788888899998776543
No 347
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=30.84 E-value=1.9e+02 Score=23.65 Aligned_cols=74 Identities=11% Similarity=0.170 Sum_probs=43.6
Q ss_pred hHHHHHhcCCEEEeccCC-cccchHHH-HHH---hcCCCeEEecC-CCC-CccccccC--CCCeeEEeCCCCHHHHHHHH
Q 017114 235 ELSQAYASGDVFVMPSES-ETLGLVVL-EAM---SSGIPVVGVRA-GGI-PDIIPEDQ--DGKIGYLFNPGDLDDCLSKL 305 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~~-e~~~~~~~-Ea~---a~G~PvI~~~~-~~~-~~~~~~~~--~~~~g~~~~~~~~~~l~~~i 305 (377)
+........|++++-... +.-|..++ +.+ .-+.+||.-.. ... ...+ . .|-.|++....+++++.++|
T Consensus 45 ~~~~~~~~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~~~~~~~~~~---~~~~Ga~G~l~K~~~~~~L~~aI 121 (216)
T PRK10100 45 RSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYREI---ENWPHINGVFYAMEDQERVVNGL 121 (216)
T ss_pred HhhccCCCCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEEECCchhHHHHH---HHhcCCeEEEECCCCHHHHHHHH
Confidence 333334447888875443 22344342 433 34667765432 221 1112 2 26789999999999999999
Q ss_pred HHHhhC
Q 017114 306 EPLLYN 311 (377)
Q Consensus 306 ~~~~~~ 311 (377)
..+++.
T Consensus 122 ~~v~~G 127 (216)
T PRK10100 122 QGVLRG 127 (216)
T ss_pred HHHHcC
Confidence 988774
No 348
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=30.80 E-value=3.8e+02 Score=24.26 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhc--CCCEEE-ccccCchhHHHHHhc--CCEEE
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT--GMPAVF-TGMLLGEELSQAYAS--GDVFV 247 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~--~~~v~~-~g~~~~~~~~~~~~~--adi~v 247 (377)
+++.++.++ ..++++.+.+.++.+. .+.+.+++......++.... ..++.+ .|. +.+.++... +|++|
T Consensus 26 ~~f~v~~La---a~~n~~~L~~q~~~f~-p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G~---~~l~~l~~~~~~D~vv 98 (389)
T TIGR00243 26 DHFQVVALS---AGKNVALMVEQILEFR-PKFVAIDDEASLKDLKTMLQQQGSRTEVLVGE---EGICEMAALEDVDQVM 98 (389)
T ss_pred cccEEEEEE---cCCCHHHHHHHHHHcC-CCEEEEcCHHHHHHHHHHhhcCCCCcEEEECH---HHHHHHHcCCCCCEEE
Confidence 444444443 3578999999888884 35566666555556665443 212333 333 566666664 58887
Q ss_pred eccCCcccchHHHHHHhcCCCeEEec
Q 017114 248 MPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.....-..=...++|+.+|+.+-..+
T Consensus 99 ~AivG~aGL~pt~~Ai~~gk~iaLAN 124 (389)
T TIGR00243 99 NAIVGAAGLLPTLAAIRAGKTIALAN 124 (389)
T ss_pred EhhhcHhhHHHHHHHHHCCCcEEEec
Confidence 65432111125788999998876544
No 349
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=30.74 E-value=2.9e+02 Score=22.36 Aligned_cols=100 Identities=22% Similarity=0.219 Sum_probs=49.7
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhC---CCceEEEEecCcc--HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEE
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 247 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l---~~~~l~i~G~g~~--~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v 247 (377)
...++++.|.- ..|-|-+.-|-... -++.+...|+... .+......+..++. +.+...+.......+|++|
T Consensus 49 ~~~v~vlcG~G--nNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~--~~v~~~~~~~~~~~~dvIV 124 (203)
T COG0062 49 ARRVLVLCGPG--NNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIG--GVVKIKELEDEPESADVIV 124 (203)
T ss_pred CCEEEEEECCC--CccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCC--cceeecccccccccCCEEE
Confidence 34467777743 33445444433222 3577777785431 22222222111221 1121122222677889888
Q ss_pred eccCCccc------c-hHHHHHH-hcCCCeEEecCCC
Q 017114 248 MPSESETL------G-LVVLEAM-SSGIPVVGVRAGG 276 (377)
Q Consensus 248 ~ps~~e~~------~-~~~~Ea~-a~G~PvI~~~~~~ 276 (377)
=.-..-|+ | -+++|.+ +.|+|||+-|.++
T Consensus 125 DalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 125 DALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred EeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 54332222 1 2455555 4999999998764
No 350
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=30.69 E-value=82 Score=23.12 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=30.3
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCceEEEEec
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD 209 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~ 209 (377)
.-+|+|+++..---+.+-+++.+.-+++-+|+|-
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG~irriiMGL 70 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGL 70 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhccchheeEecc
Confidence 4789999999888899999999998999999993
No 351
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=30.56 E-value=3.7e+02 Score=23.47 Aligned_cols=92 Identities=8% Similarity=0.033 Sum_probs=48.8
Q ss_pred hHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeE-EecCCCCCcccc-----c-----------------cC--CCC
Q 017114 235 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVV-GVRAGGIPDIIP-----E-----------------DQ--DGK 288 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI-~~~~~~~~~~~~-----~-----------------~~--~~~ 288 (377)
.-..-++.||++|.-.. .|+|=-++++... +..++ +....+...+.. . +. +.+
T Consensus 66 ~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~d 144 (311)
T PRK09545 66 SDVKRLQSADLVVWVGPEMEAFLEKPVSKLP-ENKQVTIAQLPDVKPLLMKGAHDDHHDDDHDHAGHEKSDEDHHHGEYN 144 (311)
T ss_pred HHHHHHhcCCEEEEeCCChHhHHHHHHHhcC-CCCeEEEecCCCcccccccccccccccccccccccccCCccCcCCCCC
Confidence 44566888999886542 4666556666543 22333 222222221110 0 00 012
Q ss_pred eeEEeCCCCHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 017114 289 IGYLFNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 289 ~g~~~~~~~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
.-+..+|.+...++++|.+.+. +|+......+|+..+.+
T Consensus 145 PHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~ 185 (311)
T PRK09545 145 MHIWLSPEIARATAVAIHDKLVELMPQSKAKLDANLKDFEA 185 (311)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 3345555566677777766665 77777777777766543
No 352
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=30.55 E-value=93 Score=21.36 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=22.1
Q ss_pred HHHhcCCEEEeccCCcccchHHHH---HHhcCCCeE
Q 017114 238 QAYASGDVFVMPSESETLGLVVLE---AMSSGIPVV 270 (377)
Q Consensus 238 ~~~~~adi~v~ps~~e~~~~~~~E---a~a~G~PvI 270 (377)
..+..||.+++..-++.....-+| |..+|++|+
T Consensus 55 ~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 55 AMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 566799987776555544444444 668888887
No 353
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=30.46 E-value=1.5e+02 Score=22.90 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEE
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 85 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~ 85 (377)
..+++.+++.+||.|+.-.=......++...+..|+|+.-.
T Consensus 96 t~ar~~ik~~~p~~iigVAC~~dL~~g~~~~~~~~ip~~gV 136 (158)
T PF01976_consen 96 TLARKIIKEYRPKAIIGVACERDLISGIQDLKPLGIPVQGV 136 (158)
T ss_pred HHHHHHHHHhCCCEEEEEechHHHHHHHHHHhhcCCCeeEE
Confidence 45788999999998886542233334454556667887543
No 354
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=30.17 E-value=1.1e+02 Score=21.01 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=36.3
Q ss_pred EEEEecCcc----HHHHHHhhcCCCEEE-ccccCchhHHHHHhcCCEEEeccCCcccchHHHH--HHhcCCCeEEec
Q 017114 204 IAFIGDGPY----REELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLE--AMSSGIPVVGVR 273 (377)
Q Consensus 204 l~i~G~g~~----~~~l~~~~~~~~v~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~E--a~a~G~PvI~~~ 273 (377)
++++|.|-. .+.+++.+++.++.+ .-..+-.++......+|++++..... +-..-++ +...++||..-+
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcEEEcC
Confidence 455665532 234455555444322 11223356777788999887754321 1222233 345788988654
No 355
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=30.14 E-value=2.6e+02 Score=24.79 Aligned_cols=135 Identities=13% Similarity=0.188 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCeeEecChhH--HHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhh-C-CCCCCCeEEEe
Q 017114 108 LVIKFLHRAADLTLVPSVAI--GKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLS-N-GEPDKPLIVHV 180 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~~s~~~--~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~-~-~~~~~~~i~~~ 180 (377)
-..+.+-+.+|.+++=.... .+.+.+. ..+-||. +-+-+..+|...-.+ ....+. . +.-+...|.|+
T Consensus 92 Dtarvls~y~D~IviR~~~~~~~~~~a~~-----~~vPVIN-a~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~v 165 (338)
T PRK08192 92 DTARVLSTYSDVIAMRHPDAGSVKEFAEG-----SRVPVIN-GGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMV 165 (338)
T ss_pred HHHHHHHHcCCEEEEeCCchhHHHHHHHh-----CCCCEEE-CCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEE
Confidence 45567778899888754432 2334332 2344554 444323444322111 111110 0 12256889999
Q ss_pred ecccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 181 GRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 181 G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
|-....+-...++.++....++.+.+++...+ .+.+.+.+.+.+..+. . .+++.+.+..||++.....
T Consensus 166 GD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~-~--~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 166 GDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKIT-I--TDQLEGNLDKADILYLTRI 235 (338)
T ss_pred CcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEE-E--EcCHHHHHccCCEEEEcCc
Confidence 97644455677777766666889999985332 2233332332221111 1 2578889999999988643
No 356
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=30.02 E-value=3.4e+02 Score=22.84 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=55.6
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEe-cCccHHHHHHhh-cCCC-EEEccccCchhHHHHHhcCCEEEec
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIG-DGPYREELEKMF-TGMP-AVFTGMLLGEELSQAYASGDVFVMP 249 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G-~g~~~~~l~~~~-~~~~-v~~~g~~~~~~~~~~~~~adi~v~p 249 (377)
.+.+++..|+ |.+..+.. ...++.++++=- ..+.. ++. ...+ +-..|..+.+.=..++++..+-++-
T Consensus 130 ~~~iflttGs----k~L~~f~~--~~~~~~r~~~RvLp~~~~----~~g~~~~~iia~~GPfs~e~n~al~~~~~i~~lV 199 (249)
T PF02571_consen 130 GGRIFLTTGS----KNLPPFVP--APLPGERLFARVLPTPES----ALGFPPKNIIAMQGPFSKELNRALFRQYGIDVLV 199 (249)
T ss_pred CCCEEEeCch----hhHHHHhh--cccCCCEEEEEECCCccc----cCCCChhhEEEEeCCCCHHHHHHHHHHcCCCEEE
Confidence 3667777774 55666655 222333333321 11111 111 1123 5567888776666777776554443
Q ss_pred cC---CcccchHHHHHHhcCCCeEEecCCCCC
Q 017114 250 SE---SETLGLVVLEAMSSGIPVVGVRAGGIP 278 (377)
Q Consensus 250 s~---~e~~~~~~~Ea~a~G~PvI~~~~~~~~ 278 (377)
+. ..|+..|+--|..+|+|||.-.-+..+
T Consensus 200 tK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 200 TKESGGSGFDEKIEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred EcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC
Confidence 32 237778999999999999987766554
No 357
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=30.01 E-value=3.7e+02 Score=24.27 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=56.3
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEE-ccccCchhHHHHHhc--CCEEEec
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVF-TGMLLGEELSQAYAS--GDVFVMP 249 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~-~g~~~~~~~~~~~~~--adi~v~p 249 (377)
+++.++.++ ..++++.+.+.++.+.. +.+.+++......++......++.+ .|. +.+.++... +|++|..
T Consensus 21 d~f~v~~La---a~~n~~~L~~q~~~f~p-~~v~i~~~~~~~~l~~~l~~~~~~v~~G~---~~l~~l~~~~~~D~vv~A 93 (383)
T PRK12464 21 EHFKVVGLT---ANYNIELLEQQIKRFQP-RIVSVADKELADTLRTRLSANTSKITYGT---DGLIAVATHPGSDLVLSS 93 (383)
T ss_pred cccEEEEEE---CCCCHHHHHHHHHHhCC-CEEEEcCHHHHHHHHHhccCCCcEEEECH---HHHHHHHcCCCCCEEEEh
Confidence 445555443 35789999999988843 5556666555555665443222333 332 567777664 5888865
Q ss_pred cCCcccchHHHHHHhcCCCeEEec
Q 017114 250 SESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
...-..=...++|+..|+.+...+
T Consensus 94 ivG~aGL~pt~~Ai~~gk~iaLAN 117 (383)
T PRK12464 94 VVGAAGLLPTIEALKAKKDIALAN 117 (383)
T ss_pred hhcHhhHHHHHHHHHCCCcEEEec
Confidence 442111125788999998876554
No 358
>PRK06436 glycerate dehydrogenase; Provisional
Probab=29.97 E-value=1.7e+02 Score=25.46 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=24.8
Q ss_pred hhHHHHHhcCCEEEec--cCC---cccchHHHHHHhcCCCeEEe
Q 017114 234 EELSQAYASGDVFVMP--SES---ETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 234 ~~~~~~~~~adi~v~p--s~~---e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.++.++++.||++++. ... .-++...++.|.-|.-+|-+
T Consensus 165 ~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~ 208 (303)
T PRK06436 165 MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINV 208 (303)
T ss_pred CCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEEC
Confidence 3677888999987763 222 23355677777776555533
No 359
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=29.96 E-value=2.1e+02 Score=22.51 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=26.7
Q ss_pred hhHHHHHhcCCEEEeccCCcccch--HHHHHHh------cCCCeEEecCC
Q 017114 234 EELSQAYASGDVFVMPSESETLGL--VVLEAMS------SGIPVVGVRAG 275 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~--~~~Ea~a------~G~PvI~~~~~ 275 (377)
+....++..||++|.-. .|+|+ =++|++. .++||+..+..
T Consensus 88 ~Rk~~m~~~sda~I~lP--GG~GTL~El~e~~~~~qlg~~~kPiil~n~~ 135 (178)
T TIGR00730 88 ERKAMMAELADAFIAMP--GGFGTLEELFEVLTWAQLGIHQKPIILFNVN 135 (178)
T ss_pred HHHHHHHHhCCEEEEcC--CCcchHHHHHHHHHHHHcCCCCCCEEEECCc
Confidence 44556778899987643 34444 3667775 48999988754
No 360
>COG1273 Ku-homolog [Replication, recombination, and repair]
Probab=29.91 E-value=1.6e+02 Score=24.79 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=68.3
Q ss_pred HHHHHhhcCC--CEEEccccCchhHHHHHhcCCEEEeccCCcccc-hHHHHHHhcCCCe-EEecCCC---CCccccccCC
Q 017114 214 EELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLG-LVVLEAMSSGIPV-VGVRAGG---IPDIIPEDQD 286 (377)
Q Consensus 214 ~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~-~~~~Ea~a~G~Pv-I~~~~~~---~~~~~~~~~~ 286 (377)
+++.....+. -|.+..|+|.+++..+|-..-.++.|....+=. ..+-|||+.-.-+ |+--+-. ..-++ ..
T Consensus 79 eel~s~~~es~kti~I~~Fvp~~eId~iyfD~pYYl~Pd~~g~~af~lLReam~~~~~~aIar~vl~~Rer~v~L---rp 155 (278)
T COG1273 79 EELESVPLESTKTIEIEAFVPRDEIDPIYFDKPYYLAPDKVGEKAFALLREAMAETKKVAIARLVLRRRERLVLL---RP 155 (278)
T ss_pred HHHhhccccccceEeEEeecCHhhcCceeecCceeecCCCCcchHHHHHHHHHHHcCcchhhhhhhhccceeEEE---Ee
Confidence 4444443332 488999999999999999999999998422112 2466888543222 2111111 11122 23
Q ss_pred CCeeEEeCC-------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHHhhh
Q 017114 287 GKIGYLFNP-------GDLDDCLSKLEPLLYNQELRETMGQAARQEM----EKYDWRAATRTIRNEQYNAAIWFWRKKR 354 (377)
Q Consensus 287 ~~~g~~~~~-------~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~ly~~~~~~~~~~~ 354 (377)
.+.|++... .++++....|-..--|++ |-+-|.+.+ ..|+.+.+-..|.+.+.+-+-.+...+.
T Consensus 156 ~~~glv~~TL~~~dEVRs~d~~f~~i~~~~~d~e----ml~lA~~lI~~~~~~fdp~~y~D~y~~aL~elI~aK~~g~~ 230 (278)
T COG1273 156 RGKGLVLTTLRYPDEVRSPDEYFPGIPDIKIDPE----MLELAKQLIDKKTGTFDPDEYEDRYQEALMELIEAKLEGRK 230 (278)
T ss_pred cCCcEEEEEecCchhccChhhhcCCCCcccCCHH----HHHHHHHHHHHhcCCCChHHccCHHHHHHHHHHHHHHhCCC
Confidence 334444321 123332222222212333 333344443 2589999888888655555544444344
No 361
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.76 E-value=3.7e+02 Score=23.20 Aligned_cols=78 Identities=10% Similarity=0.200 Sum_probs=47.7
Q ss_pred HHHHHHHHhC----CCceEEEEecCcc-HHHHHHhhcCC--CEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHH
Q 017114 190 DFLKRVMDRL----PEARIAFIGDGPY-REELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 262 (377)
Q Consensus 190 ~~l~~a~~~l----~~~~l~i~G~g~~-~~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea 262 (377)
...++.++.+ .+-+++++|.+.. -.-+..+.... .|.....-+ .++..++++||++|...-..++ .--|.
T Consensus 143 ~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t-~~l~~~~~~ADIVV~avG~~~~--i~~~~ 219 (285)
T PRK14189 143 YGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT-RDLAAHTRQADIVVAAVGKRNV--LTADM 219 (285)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC-CCHHHHhhhCCEEEEcCCCcCc--cCHHH
Confidence 4445555544 5788999997654 44444444333 354433322 5799999999999986543332 22377
Q ss_pred HhcCCCeE
Q 017114 263 MSSGIPVV 270 (377)
Q Consensus 263 ~a~G~PvI 270 (377)
+.-|.-||
T Consensus 220 ik~gavVI 227 (285)
T PRK14189 220 VKPGATVI 227 (285)
T ss_pred cCCCCEEE
Confidence 77786555
No 362
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=29.76 E-value=1.1e+02 Score=19.51 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=38.3
Q ss_pred CCceEEEEe-cCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 200 PEARIAFIG-DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 200 ~~~~l~i~G-~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.+..+.+.| .....+.+.+++...+-.+.... -...+.+|.... .....+..++.+.|+|+|..
T Consensus 7 ~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~--------~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~ 71 (78)
T PF00533_consen 7 EGCTFCISGFDSDEREELEQLIKKHGGTVSNSF--------SKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSP 71 (78)
T ss_dssp TTEEEEESSTSSSHHHHHHHHHHHTTEEEESSS--------STTSSEEEESSS-HCCCHHHHHHHHTTSEEEET
T ss_pred CCEEEEEccCCCCCHHHHHHHHHHcCCEEEeec--------ccCcEEEEeCCC-CCccHHHHHHHHCCCeEecH
Confidence 456676733 33456677777766554442222 234555554433 23466788999999999964
No 363
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=29.65 E-value=1.6e+02 Score=24.58 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCEEEeCCCchh-HHHHHHHHHhhCCCEEEEeccCCcc
Q 017114 45 PRIISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPV 92 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~ 92 (377)
.-+.-.++...|+++++..-+.. -..+...+...|++++.+.|++.-.
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaHG~~ie 256 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAHGNGIE 256 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhcCcEEEEeeccccHH
Confidence 45677889999999999864332 2334556778899999999996533
No 364
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=29.53 E-value=1.8e+02 Score=20.68 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCCEEEeCC
Q 017114 45 PRIISEVARFKPDIIHASS 63 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~ 63 (377)
..+.+.+++.+||+|-++.
T Consensus 41 ~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEc
Confidence 6677888888999887765
No 365
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=29.37 E-value=1.8e+02 Score=25.48 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=48.1
Q ss_pred CCCEEEccccCchhHH--HHHhcCCEEEeccCCcc-cchHHHHH-----HhcCCCeEEe--cCCCCCccccccCCCCeeE
Q 017114 222 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGY 291 (377)
Q Consensus 222 ~~~v~~~g~~~~~~~~--~~~~~adi~v~ps~~e~-~~~~~~Ea-----~a~G~PvI~~--~~~~~~~~~~~~~~~~~g~ 291 (377)
..++...|.+|.+.+. ......|++|.-+..-| .|.|++.. +..|+|+|-| |.|..-++. +. |
T Consensus 230 ~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIA-----Gk-g- 302 (320)
T TIGR00557 230 AEGIDLIGPLPADTLFHPAALAKYDAVLAMYHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFDIA-----GK-G- 302 (320)
T ss_pred HCCCcccCCCCchhhcccccccCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-C-
Confidence 3467788999877653 34466899887665332 35555533 3679999965 445554544 22 1
Q ss_pred EeCCCCHHHHHHHHHHH
Q 017114 292 LFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 292 ~~~~~~~~~l~~~i~~~ 308 (377)
--|+.++.++|...
T Consensus 303 ---~A~~~S~~~Ai~~A 316 (320)
T TIGR00557 303 ---KADPGSLIAAIKLA 316 (320)
T ss_pred ---CCCHHHHHHHHHHH
Confidence 22778888888755
No 366
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are
Probab=29.35 E-value=95 Score=25.71 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=26.3
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHH-HHHhhCCC
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALI-IAKLLCVP 81 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~-~~~~~~~~ 81 (377)
..+...+...+++.+||+|..|+...+.+..+. -++..|++
T Consensus 83 ~~LL~~f~~~i~~~DPDiivG~Ni~~fdl~~L~~R~~~l~i~ 124 (234)
T cd05776 83 RALLNFFLAKLQKIDPDVLVGHDLEGFDLDVLLSRIQELKVP 124 (234)
T ss_pred HHHHHHHHHHHhhcCCCEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 344567788889999999999986444443222 23344555
No 367
>PRK08328 hypothetical protein; Provisional
Probab=29.31 E-value=2.2e+02 Score=23.53 Aligned_cols=46 Identities=26% Similarity=0.292 Sum_probs=30.0
Q ss_pred cCchhHHHHHhcCCEEEeccCCcccchHHHH--HHhcCCCeEEecCCCC
Q 017114 231 LLGEELSQAYASGDVFVMPSESETLGLVVLE--AMSSGIPVVGVRAGGI 277 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~~e~~~~~~~E--a~a~G~PvI~~~~~~~ 277 (377)
++.+++.++++.+|+++....... ...++. +...|+|+|.....+.
T Consensus 107 ~~~~~~~~~l~~~D~Vid~~d~~~-~r~~l~~~~~~~~ip~i~g~~~g~ 154 (231)
T PRK08328 107 LSEENIDEVLKGVDVIVDCLDNFE-TRYLLDDYAHKKGIPLVHGAVEGT 154 (231)
T ss_pred CCHHHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEeeccC
Confidence 334556678899999987654321 223444 6789999997665544
No 368
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=29.26 E-value=1.6e+02 Score=25.68 Aligned_cols=62 Identities=6% Similarity=0.015 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHH-HHHhcCCC
Q 017114 190 DFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIP 268 (377)
Q Consensus 190 ~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~P 268 (377)
..+++.+...|++++..+..... ....+..++++.+|++++..-.+ ....+. ++...|+.
T Consensus 15 ~el~rlL~~HP~~el~~l~s~~~------------------~~~~~~~~~~~~~D~vFlalp~~-~s~~~~~~~~~~g~~ 75 (310)
T TIGR01851 15 LQIRERLSGRDDIELLSIAPDRR------------------KDAAERAKLLNAADVAILCLPDD-AAREAVSLVDNPNTC 75 (310)
T ss_pred HHHHHHHhCCCCeEEEEEecccc------------------cCcCCHhHhhcCCCEEEECCCHH-HHHHHHHHHHhCCCE
Confidence 34667777778888776654322 11123445667889877655333 233333 34467888
Q ss_pred eE
Q 017114 269 VV 270 (377)
Q Consensus 269 vI 270 (377)
||
T Consensus 76 VI 77 (310)
T TIGR01851 76 II 77 (310)
T ss_pred EE
Confidence 87
No 369
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=29.14 E-value=1.7e+02 Score=24.00 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEE
Q 017114 46 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 84 (377)
Q Consensus 46 ~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (377)
...+.+++.+.|+|+..+.++..-..-.+.+..|+|+++
T Consensus 169 ~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlL 207 (221)
T PF07302_consen 169 AAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVLL 207 (221)
T ss_pred HHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEe
Confidence 444555556677776666554444444455666677665
No 370
>PRK13266 Thf1-like protein; Reviewed
Probab=29.06 E-value=2.3e+02 Score=23.35 Aligned_cols=46 Identities=7% Similarity=-0.048 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 294 NPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 294 ~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
+..+.+.|.+++...+. ||+.+++-++...++++..+.+.+...+.
T Consensus 69 Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~ 115 (225)
T PRK13266 69 PEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLT 115 (225)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 34467788888888877 89888888888888888888877666555
No 371
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=28.69 E-value=1.4e+02 Score=26.62 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCceEE-EEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCC
Q 017114 191 FLKRVMDRLPEARIA-FIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 268 (377)
Q Consensus 191 ~l~~a~~~l~~~~l~-i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 268 (377)
.+++.+...|.+++. ++.+.. ..+.+............-.+...+..++...+|++++..-.+.....+-++...|+.
T Consensus 15 ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~~~~G~~ 94 (346)
T TIGR01850 15 ELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGVSAELAPELLAAGVK 94 (346)
T ss_pred HHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchHHHHHHHHHHhCCCE
Confidence 566666777899888 545332 111122211110000000111113344556899988866544444444455678988
Q ss_pred eEE
Q 017114 269 VVG 271 (377)
Q Consensus 269 vI~ 271 (377)
||-
T Consensus 95 VID 97 (346)
T TIGR01850 95 VID 97 (346)
T ss_pred EEe
Confidence 883
No 372
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=28.11 E-value=2e+02 Score=25.48 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=48.1
Q ss_pred CCEEEccccCchhHH--HHHhcCCEEEeccCCcc-cchHHHHH-----HhcCCCeEEe--cCCCCCccccccCCCCeeEE
Q 017114 223 MPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGYL 292 (377)
Q Consensus 223 ~~v~~~g~~~~~~~~--~~~~~adi~v~ps~~e~-~~~~~~Ea-----~a~G~PvI~~--~~~~~~~~~~~~~~~~~g~~ 292 (377)
.++...|.+|.+.+. ......|++|.-+..-| .|.|++.. +..|+|+|-| |.|..-++. +. |
T Consensus 243 ~Gi~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIA-----Gk-g-- 314 (336)
T PRK05312 243 EGIDARGPLPADTMFHAAARATYDAAICMYHDQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAFDIA-----GK-G-- 314 (336)
T ss_pred CCCCccCCCCchhhcccccccCCCEEEEcccccCChhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-C--
Confidence 367778999877653 34567899887665332 35555443 4679999965 445555554 22 2
Q ss_pred eCCCCHHHHHHHHHHH
Q 017114 293 FNPGDLDDCLSKLEPL 308 (377)
Q Consensus 293 ~~~~~~~~l~~~i~~~ 308 (377)
--|+.++.++|...
T Consensus 315 --~A~~~S~~~Ai~lA 328 (336)
T PRK05312 315 --IARPDSLIAALRLA 328 (336)
T ss_pred --CCCHHHHHHHHHHH
Confidence 22788899888765
No 373
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=27.67 E-value=3.2e+02 Score=21.84 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=43.6
Q ss_pred hhHHHHHh--cCCEEEeccCCcc---cchHHHHHHh---cCCCeEEec-CCCC---CccccccCCCCeeEEeCCCCHHHH
Q 017114 234 EELSQAYA--SGDVFVMPSESET---LGLVVLEAMS---SGIPVVGVR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDC 301 (377)
Q Consensus 234 ~~~~~~~~--~adi~v~ps~~e~---~~~~~~Ea~a---~G~PvI~~~-~~~~---~~~~~~~~~~~~g~~~~~~~~~~l 301 (377)
++....+. ..|++++-....+ .|..+++.+. ...|+|.-. .... ...+ ..+..+++..|.+.+++
T Consensus 34 ~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls~~~~~~~~~~~~---~~Ga~~~l~kp~~~~~l 110 (227)
T TIGR03787 34 PSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLTARDSDFDTVSGL---RLGADDYLTKDISLPHL 110 (227)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH---hcCCCEEEECCCCHHHH
Confidence 34444443 3577776543322 3455555554 357877542 2221 2233 45667889999999999
Q ss_pred HHHHHHHhh
Q 017114 302 LSKLEPLLY 310 (377)
Q Consensus 302 ~~~i~~~~~ 310 (377)
.+++..++.
T Consensus 111 ~~~i~~~~~ 119 (227)
T TIGR03787 111 LARITALFR 119 (227)
T ss_pred HHHHHHHHH
Confidence 999887765
No 374
>TIGR00035 asp_race aspartate racemase.
Probab=27.64 E-value=2.9e+02 Score=22.67 Aligned_cols=92 Identities=13% Similarity=0.295 Sum_probs=47.9
Q ss_pred eEEEeecccccccHHHHHHHHHhC------CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEE
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMDRL------PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFV 247 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~~l------~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v 247 (377)
.|+.+|.+++.-..+.+-+..+.. .....++.-+....+.......+..-.....+ .+..+.+. .+|+++
T Consensus 3 ~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l--~~~~~~L~~~g~d~iv 80 (229)
T TIGR00035 3 MIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPIL--IDIAVKLENAGADFII 80 (229)
T ss_pred eEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHH--HHHHHHHHHcCCCEEE
Confidence 488899998887777666555433 12445555544333333333322222223333 33334433 388899
Q ss_pred eccCCcccchHHHHHH--hcCCCeEEe
Q 017114 248 MPSESETLGLVVLEAM--SSGIPVVGV 272 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~--a~G~PvI~~ 272 (377)
++..... .+++.+ ..++|+|.-
T Consensus 81 iaCNTah---~~~~~l~~~~~iPii~i 104 (229)
T TIGR00035 81 MPCNTAH---KFAEDIQKAIGIPLISM 104 (229)
T ss_pred ECCccHH---HHHHHHHHhCCCCEech
Confidence 9876322 223333 246788753
No 375
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=27.63 E-value=3e+02 Score=23.34 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=22.9
Q ss_pred cCCCEEEeC---C-------CchhHHHHHHHHHhhCCCEEEEec
Q 017114 54 FKPDIIHAS---S-------PGIMVFGALIIAKLLCVPIVMSYH 87 (377)
Q Consensus 54 ~~pDii~~~---~-------~~~~~~~~~~~~~~~~~~~i~~~h 87 (377)
.+||+|+.- + .......+.+-+...|+|-|....
T Consensus 86 ~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 86 APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 689999872 1 122345566777889999877654
No 376
>PRK10637 cysG siroheme synthase; Provisional
Probab=27.45 E-value=5.1e+02 Score=24.13 Aligned_cols=77 Identities=10% Similarity=-0.027 Sum_probs=48.4
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHH-HHHhcCCCeEEecCCCCCc
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~PvI~~~~~~~~~ 279 (377)
+.++.++... ..+++..+....++.+...- -....+..+++++..+..+.....+. +|-+.|++|-+.|.+...+
T Consensus 35 ga~v~visp~-~~~~~~~l~~~~~i~~~~~~---~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~ 110 (457)
T PRK10637 35 GARLTVNALA-FIPQFTAWADAGMLTLVEGP---FDESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAAS 110 (457)
T ss_pred CCEEEEEcCC-CCHHHHHHHhCCCEEEEeCC---CChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCe
Confidence 5677777643 34566666666677665432 12345678888777766555555554 4447799998888776555
Q ss_pred cc
Q 017114 280 II 281 (377)
Q Consensus 280 ~~ 281 (377)
++
T Consensus 111 f~ 112 (457)
T PRK10637 111 FI 112 (457)
T ss_pred EE
Confidence 44
No 377
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=27.37 E-value=1.3e+02 Score=23.90 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=28.8
Q ss_pred cccchHHHHHHHHhcCCCEEEeCCCchhHHHHHH-HHHhhCCCE
Q 017114 40 SLALSPRIISEVARFKPDIIHASSPGIMVFGALI-IAKLLCVPI 82 (377)
Q Consensus 40 ~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~-~~~~~~~~~ 82 (377)
...+...+.+.+++.+||+|..++...+.++.+. -++..|++.
T Consensus 48 E~~lL~~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~~gi~~ 91 (188)
T cd05781 48 DRKIIREFVKYVKEYDPDIIVGYNSNAFDWPYLVERARVLGVKL 91 (188)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCCcCcHHHHHHHHHHhCCCc
Confidence 3455678889999999999998876545444332 344556653
No 378
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=27.30 E-value=3.8e+02 Score=27.32 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=58.3
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc----CCEEEeccCCcccchHHHHHH---hcCCCeEEecC
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS----GDVFVMPSESETLGLVVLEAM---SSGIPVVGVRA 274 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~----adi~v~ps~~e~~~~~~~Ea~---a~G~PvI~~~~ 274 (377)
++.++.+.+ ....+.......+....+.-+.++....+.. .|++++ ...+..+..+++.+ ....|+|....
T Consensus 699 ~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~~~~~~g~~l~~~l~~~~~~ipIIvls~ 777 (828)
T PRK13837 699 TVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-DDRLLDEEQAAAALHAAAPTLPIILGGN 777 (828)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-CCCCCCHHHHHHHHHhhCCCCCEEEEeC
Confidence 455555443 2334444444444444444444566665543 588887 33333344444444 34578775432
Q ss_pred C-C---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 275 G-G---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 275 ~-~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
. . ..+.. ..+ .+++..|.+.+++..++..++.
T Consensus 778 ~~~~~~~~~~~---~~G-~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 778 SKTMALSPDLL---ASV-AEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred CCchhhhhhHh---hcc-CcEEeCCCCHHHHHHHHHHHHc
Confidence 2 2 22333 445 7899999999999999988765
No 379
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=27.30 E-value=3.2e+02 Score=22.14 Aligned_cols=45 Identities=7% Similarity=-0.081 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 295 PGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 295 ~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
..+.+.|.+++...+. ||+.+++-++...++++..+.+.+...+.
T Consensus 68 ee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~ 113 (206)
T PLN03060 68 ATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNS 113 (206)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4467788888888877 89988888888888888888887766654
No 380
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=27.12 E-value=2.2e+02 Score=25.44 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=45.3
Q ss_pred EccccCchhHHHHHhcCCEEEecc---CCcccchHHHHHHhcC------CCeEEe---cCCC-CCccccccCCCCeeEEe
Q 017114 227 FTGMLLGEELSQAYASGDVFVMPS---ESETLGLVVLEAMSSG------IPVVGV---RAGG-IPDIIPEDQDGKIGYLF 293 (377)
Q Consensus 227 ~~g~~~~~~~~~~~~~adi~v~ps---~~e~~~~~~~Ea~a~G------~PvI~~---~~~~-~~~~~~~~~~~~~g~~~ 293 (377)
.+-.++.+.+.+..+.++.++.-- ...|+|..+.|.++-. .|+.-- |.+. ....+ .-...
T Consensus 264 ~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~l-------e~~~~ 336 (356)
T PLN02683 264 SIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANL-------ERLAL 336 (356)
T ss_pred CCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHH-------HHhhC
Confidence 445566677888888888776643 3568899999888654 355422 2111 11111 01122
Q ss_pred CCCCHHHHHHHHHHHhh
Q 017114 294 NPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 294 ~~~~~~~l~~~i~~~~~ 310 (377)
+ +++.+.+++.+++.
T Consensus 337 p--~~~~i~~a~~~~~~ 351 (356)
T PLN02683 337 P--QVEDIVRAAKRACY 351 (356)
T ss_pred C--CHHHHHHHHHHHHH
Confidence 2 78889999888874
No 381
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=26.96 E-value=73 Score=26.76 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=35.6
Q ss_pred EEEeecccccccHHHHHHHHHhCCCceEEEEecC-ccHHHHHHhhcCCCEEEcccc
Q 017114 177 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDG-PYREELEKMFTGMPAVFTGML 231 (377)
Q Consensus 177 i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g-~~~~~l~~~~~~~~v~~~g~~ 231 (377)
|+|.|+......+..++......|+ +++++.+. .....+.+.++..+|.|.|+.
T Consensus 155 Ilft~~~~KG~~L~~fL~~~~~~pk-~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 155 ILFTGGQDKGEVLKYFLDKINQSPK-KIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred eEEeCCCccHHHHHHHHHHcCCCCC-eEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 7788877666566666666666555 56666643 345566666777778887764
No 382
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.96 E-value=84 Score=24.50 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=44.3
Q ss_pred CcEEEEEeeCCCCC--------ccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCC--chhHHHH
Q 017114 2 GDEVMVVTTHEGVP--------QEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSP--GIMVFGA 71 (377)
Q Consensus 2 G~~V~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~--~~~~~~~ 71 (377)
|..|.++.++++.. ..++++++.+...-+ +.......+.+.|++.+||+|++.-. ..-.+.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~--------~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~- 116 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGY--------FGPEEEEEIIERINASGADILFVGLGAPKQELWI- 116 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCC--------CChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHH-
Confidence 67788887765422 235666665432211 11222334788999999999998643 222222
Q ss_pred HHHHHhhCCCEEEEeccC
Q 017114 72 LIIAKLLCVPIVMSYHTH 89 (377)
Q Consensus 72 ~~~~~~~~~~~i~~~h~~ 89 (377)
.......+.++++.+-+.
T Consensus 117 ~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 117 ARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred HHHHHHCCCCEEEEecee
Confidence 223344467777766543
No 383
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=26.77 E-value=2.7e+02 Score=23.55 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCceEEEEecC-ccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 191 FLKRVMDRLPEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 191 ~l~~a~~~l~~~~l~i~G~g-~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
.+++.+...+++.+..+... ...+...+.... .+... .++.++-...|+++-.+......--..+++..|++|
T Consensus 15 ~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-~~~~~-----~d~~~l~~~~DvVve~t~~~~~~e~~~~aL~aGk~V 88 (265)
T PRK13303 15 AVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-AVRVV-----SSVDALPQRPDLVVECAGHAALKEHVVPILKAGIDC 88 (265)
T ss_pred HHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-CCeee-----CCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCE
Confidence 35566666677777665522 122222222211 22222 233333345899987765555556678899999999
Q ss_pred EEecCC
Q 017114 270 VGVRAG 275 (377)
Q Consensus 270 I~~~~~ 275 (377)
++...+
T Consensus 89 vi~s~~ 94 (265)
T PRK13303 89 AVISVG 94 (265)
T ss_pred EEeChH
Confidence 986554
No 384
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=26.66 E-value=3.2e+02 Score=21.51 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc
Q 017114 189 LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS 242 (377)
Q Consensus 189 ~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~ 242 (377)
+..+.+.++.. ++++.++|-|...+.+++.++.-+=.+....+.+++.++|..
T Consensus 125 ~~~~~~~l~~~-~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~~~~~l~~~~~~ 177 (183)
T cd01453 125 IYETIDKLKKE-NIRVSVIGLSAEMHICKEICKATNGTYKVILDETHLKELLLE 177 (183)
T ss_pred HHHHHHHHHHc-CcEEEEEEechHHHHHHHHHHHhCCeeEeeCCHHHHHHHHHh
Confidence 44455555543 788888887766667777777654334444445677777766
No 385
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=26.27 E-value=2.1e+02 Score=25.28 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=49.2
Q ss_pred CCCEEEccccCchhHH--HHHhcCCEEEeccCCcc-cchHHHHH-----HhcCCCeEEe--cCCCCCccccccCCCCeeE
Q 017114 222 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGY 291 (377)
Q Consensus 222 ~~~v~~~g~~~~~~~~--~~~~~adi~v~ps~~e~-~~~~~~Ea-----~a~G~PvI~~--~~~~~~~~~~~~~~~~~g~ 291 (377)
..++...|.+|.+.+. ......|++|.-+..-| .|.|++.. +..|+|+|-| |.|..-++. +. |
T Consensus 237 ~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIA-----Gk-g- 309 (332)
T PRK00232 237 AEGINLVGPLPADTLFQPAYLGDADAVLAMYHDQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALDLA-----GK-G- 309 (332)
T ss_pred hCCCCcCCCCCchhhccccccCCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-C-
Confidence 3467778999877653 33456899987665332 35555543 4679999855 455555554 22 2
Q ss_pred EeCCCCHHHHHHHHHHHh
Q 017114 292 LFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 292 ~~~~~~~~~l~~~i~~~~ 309 (377)
--|+.++.++|....
T Consensus 310 ---~A~~~S~~~Ai~lA~ 324 (332)
T PRK00232 310 ---IADVGSFITALNLAI 324 (332)
T ss_pred ---CCCHHHHHHHHHHHH
Confidence 227888999987653
No 386
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=26.26 E-value=1.3e+02 Score=22.67 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=34.2
Q ss_pred EEEeccCCcccchHHHHHHh-cCCCeEEe---cCCCCCc-----cccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 245 VFVMPSESETLGLVVLEAMS-SGIPVVGV---RAGGIPD-----IIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 245 i~v~ps~~e~~~~~~~Ea~a-~G~PvI~~---~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
+++.|.-+...+..+.+|+. .++|+|=. +.-.-.+ ++ .+.-.|.++- .-.+...-++..++
T Consensus 71 iiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~~S~i---s~~a~G~I~G-~G~~gY~lAl~al~ 140 (146)
T PRK05395 71 IIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEFRHHSYI---SDVAVGVICG-FGADGYLLALEALA 140 (146)
T ss_pred EEECchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccccccc---cccceEEEee-CCHHhHHHHHHHHH
Confidence 45567666667888999984 68999833 3222211 22 2233444443 34566666665554
No 387
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=25.85 E-value=1.4e+02 Score=23.40 Aligned_cols=47 Identities=26% Similarity=0.242 Sum_probs=32.7
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccC
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 89 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 89 (377)
+...+.+.+++.+||+|++.......-.+..++-+.+.+++.+.-+.
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~l 125 (181)
T cd01985 79 TAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVTKL 125 (181)
T ss_pred HHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEEEE
Confidence 34567777888899999987654433333447778899988776654
No 388
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=25.84 E-value=81 Score=28.46 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=15.5
Q ss_pred chHHHHHHhcCCCeEEecCCCC
Q 017114 256 GLVVLEAMSSGIPVVGVRAGGI 277 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~~~~~~~ 277 (377)
-.++--...||+||||.+.-..
T Consensus 86 k~~irNla~~GI~vicYNFMPv 107 (394)
T TIGR00695 86 KQTLRNLAQCGIKTVCYNFMPV 107 (394)
T ss_pred HHHHHHHHHcCCCEEEEEeccc
Confidence 3455556689999999876443
No 389
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=25.79 E-value=2.4e+02 Score=24.97 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=32.4
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCC-EEEEeccCCc
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVP 91 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~ 91 (377)
...+.+...+.+||.|++-..-..-...++.+...|.+ .+.++|...+
T Consensus 224 ~~~ll~~~LR~~PD~IivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~s~ 272 (332)
T PRK13900 224 TQDLIEACLRLRPDRIIVGELRGAEAFSFLRAINTGHPGSISTLHADSP 272 (332)
T ss_pred HHHHHHHHhccCCCeEEEEecCCHHHHHHHHHHHcCCCcEEEEEecCCH
Confidence 35677777889999999865322222234556677887 7899998643
No 390
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=25.73 E-value=1.6e+02 Score=23.37 Aligned_cols=44 Identities=7% Similarity=0.154 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCc
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVP 91 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~ 91 (377)
..+.+.++++++|+|.+-++.... ..-++..+ +.. |+.+|-..+
T Consensus 77 ~eL~~~l~e~~~d~v~lAG~M~iL-s~~fl~~~-~~~-iiNIHPaLl 120 (206)
T KOG3076|consen 77 NELAEVLLELGTDLVCLAGYMRIL-SGEFLSQL-PKR-IINIHPALL 120 (206)
T ss_pred HHHHHHHHHhCCCEEEehhhHHHc-CHHHHhhc-ccc-eEecccccc
Confidence 788999999999999988753332 22223333 333 666676443
No 391
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic
Probab=25.73 E-value=1.2e+02 Score=24.93 Aligned_cols=41 Identities=24% Similarity=0.105 Sum_probs=27.1
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHH-HHHhhCCC
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALI-IAKLLCVP 81 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~-~~~~~~~~ 81 (377)
..+...+.+.+++.+||+|..++...+.+..+. -++..|++
T Consensus 72 ~eLL~~f~~~i~~~DPDii~GyN~~~FDl~yL~~R~~~l~i~ 113 (230)
T cd05777 72 EELLLAWRDFVQEVDPDIITGYNICNFDLPYLLERAKALKLN 113 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHhCCc
Confidence 445667888899999999999986555444322 23344554
No 392
>PRK13761 hypothetical protein; Provisional
Probab=25.59 E-value=3.8e+02 Score=22.08 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=52.2
Q ss_pred HhcCCEEEeccCCcccchHHHHHH-hcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHH
Q 017114 240 YASGDVFVMPSESETLGLVVLEAM-SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 318 (377)
Q Consensus 240 ~~~adi~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 318 (377)
+-.||++++|.-... =.||+ .+|+-||+-|......-. +....- + ++.+..++-.+...-...+..
T Consensus 148 Iy~ADVVLVPLEDGD----R~EaL~~mGK~VI~IDLNPLSRTa---r~A~it-I-----VDni~RA~p~m~~~~~elk~~ 214 (248)
T PRK13761 148 IYSADVVLVPLEDGD----RTEALVKMGKTVIAIDLNPLSRTA---RTATIT-I-----VDNITRAVPNMTEYARELKKK 214 (248)
T ss_pred ceeccEEEecCCCCc----HHHHHHHcCCeEEEEeCCCccccc---ccCcee-e-----ehhHHHHHHHHHHHHHHHhcC
Confidence 446899999975211 23443 689999999987766554 222211 1 234555554444322222222
Q ss_pred -HHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017114 319 -GQAARQEMEKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 319 -~~~~~~~~~~~s~~~~~~~~~~~ly~~~ 346 (377)
.+...+.++.|+-....+.-++.+-+.+
T Consensus 215 ~~~el~~iv~~~dN~~~L~~al~~I~~rl 243 (248)
T PRK13761 215 DREELEEIVENYDNKKNLSEALKEIRERL 243 (248)
T ss_pred CHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 2333445578888877777665554443
No 393
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=25.59 E-value=3.8e+02 Score=22.02 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=42.5
Q ss_pred ccchHHHHHHHHhcCCCEEEeCC-----CchhHHHHHHH-HHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHH
Q 017114 41 LALSPRIISEVARFKPDIIHASS-----PGIMVFGALII-AKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLH 114 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~-----~~~~~~~~~~~-~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (377)
+..+..-.+.+.+...|.+|+.- .+...+....+ +-+...+..+++|-... ...+++..+.-
T Consensus 15 ~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~------------~p~~~i~~fa~ 82 (220)
T COG0036 15 FARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVE------------NPDRYIEAFAK 82 (220)
T ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecC------------CHHHHHHHHHH
Confidence 44445555666777889999842 11122222222 22334567777776542 22345667777
Q ss_pred hcCCeeEecCh
Q 017114 115 RAADLTLVPSV 125 (377)
Q Consensus 115 ~~~d~ii~~s~ 125 (377)
..||.|.+.-+
T Consensus 83 agad~It~H~E 93 (220)
T COG0036 83 AGADIITFHAE 93 (220)
T ss_pred hCCCEEEEEec
Confidence 78999988776
No 394
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=25.53 E-value=91 Score=26.95 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=45.0
Q ss_pred CCCEEEccccCchhH--HHHHhcCCEEEeccCCcc-cchHHHHH-----HhcCCCeEEe--cCCCCCccccccCCCCeeE
Q 017114 222 GMPAVFTGMLLGEEL--SQAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGY 291 (377)
Q Consensus 222 ~~~v~~~g~~~~~~~--~~~~~~adi~v~ps~~e~-~~~~~~Ea-----~a~G~PvI~~--~~~~~~~~~~~~~~~~~g~ 291 (377)
..++...|.+|.+.+ ...+...|++|.-+..-| .|.|++.. +..|+|+|-| |.|..-++. +.+
T Consensus 211 ~~gi~v~GP~paDt~F~~~~~~~fD~vvaMYHDQGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfDIA-----Gkg-- 283 (298)
T PF04166_consen 211 AEGIDVFGPYPADTVFGKANRGKFDAVVAMYHDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAFDIA-----GKG-- 283 (298)
T ss_dssp HTTHEEEEEE-HHHHTSHHHHTT-SEEEESSHHHHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-CCGT-----TTT--
T ss_pred hCCCceECCCccHHhhhcchhccCCEEEEeecccCccceeecccccceEEecCCCeeeecCCCCchhhhh-----CCC--
Confidence 457889999987765 356677899886543222 24444433 3678998854 566666665 222
Q ss_pred EeCCCCHHHHHHHHHHH
Q 017114 292 LFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 292 ~~~~~~~~~l~~~i~~~ 308 (377)
--|+.++.++|...
T Consensus 284 ---~A~~~s~~~Ai~~A 297 (298)
T PF04166_consen 284 ---IADPSSMIEAIKLA 297 (298)
T ss_dssp ---TS-THHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHh
Confidence 22778888888643
No 395
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=25.49 E-value=1.7e+02 Score=20.52 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCceEEEEecCc--cHHHHHHhhc
Q 017114 189 LDFLKRVMDRLPEARIAFIGDGP--YREELEKMFT 221 (377)
Q Consensus 189 ~~~l~~a~~~l~~~~l~i~G~g~--~~~~l~~~~~ 221 (377)
...+.+.++.+|+.+++++|+.. +.+...+.++
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~ 86 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDSGQHDPEIYAEIAR 86 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHH
Confidence 46677778888999999999532 3334444443
No 396
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.45 E-value=1.5e+02 Score=23.26 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=21.5
Q ss_pred HHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEE
Q 017114 49 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 85 (377)
Q Consensus 49 ~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~ 85 (377)
+.+...+||+|++....... ...-.....|+|+++.
T Consensus 63 E~ll~l~PDlii~~~~~~~~-~~~~~l~~~gIpvv~i 98 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQ-TILDKLEQLGIPVLYV 98 (186)
T ss_pred HHHhccCCCEEEEecCCCch-hHHHHHHHcCCCEEEe
Confidence 55667899999986532211 1122335678998765
No 397
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=25.24 E-value=55 Score=23.86 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=17.6
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCc
Q 017114 42 ALSPRIISEVARFKPDIIHASSPG 65 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~ 65 (377)
.....+.+++++.+||+|+++++.
T Consensus 87 ~~~~~l~~~i~~~~p~~V~t~~~~ 110 (128)
T PF02585_consen 87 ELVRDLEDLIREFRPDVVFTPDPD 110 (128)
T ss_dssp HHHHHHHHHHHHH-ESEEEEE-ST
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC
Confidence 345678888999999999998753
No 398
>PRK14852 hypothetical protein; Provisional
Probab=25.19 E-value=3.4e+02 Score=28.13 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=36.3
Q ss_pred CEEEc-cccCchhHHHHHhcCCEEEeccCCccc---chHHHHHHhcCCCeEEecCCCCC
Q 017114 224 PAVFT-GMLLGEELSQAYASGDVFVMPSESETL---GLVVLEAMSSGIPVVGVRAGGIP 278 (377)
Q Consensus 224 ~v~~~-g~~~~~~~~~~~~~adi~v~ps~~e~~---~~~~~Ea~a~G~PvI~~~~~~~~ 278 (377)
+|... ..+..+.+.+++..+|++|-....-.+ -...-.+...|+|+|.....+..
T Consensus 403 ~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 403 DIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred eEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 45443 567778899999999999964432111 12233567899999987664443
No 399
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=25.17 E-value=1.4e+02 Score=21.97 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=16.3
Q ss_pred chhHHHHHhcCCEEEeccCCcccchHHHHHHh
Q 017114 233 GEELSQAYASGDVFVMPSESETLGLVVLEAMS 264 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 264 (377)
..++.+....+|++++.-..+..... .|.++
T Consensus 59 ~~~~~~~~~~aDlv~iavpDdaI~~v-a~~La 89 (127)
T PF10727_consen 59 ILDLEEILRDADLVFIAVPDDAIAEV-AEQLA 89 (127)
T ss_dssp ---TTGGGCC-SEEEE-S-CCHHHHH-HHHHH
T ss_pred ccccccccccCCEEEEEechHHHHHH-HHHHH
Confidence 34566778899999987765555443 34443
No 400
>PRK08223 hypothetical protein; Validated
Probab=25.04 E-value=2.7e+02 Score=24.03 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=28.4
Q ss_pred ccCchhHHHHHhcCCEEEeccCCcccchH--H-HHHHhcCCCeEEecCCC
Q 017114 230 MLLGEELSQAYASGDVFVMPSESETLGLV--V-LEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 230 ~~~~~~~~~~~~~adi~v~ps~~e~~~~~--~-~Ea~a~G~PvI~~~~~~ 276 (377)
.++.++..+++..+|+++-....-.+... + --+..+|+|+|.....+
T Consensus 105 ~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 105 GIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred ccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 34456778889999998844421111221 2 24578899999764433
No 401
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=24.94 E-value=4e+02 Score=27.97 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=43.2
Q ss_pred EEEEecCccHHHHHHhhcCC-CEE--EccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 204 IAFIGDGPYREELEKMFTGM-PAV--FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 204 l~i~G~g~~~~~l~~~~~~~-~v~--~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
++.+++. ..+..++++... ++. -...-+.+++..+++.+|+++...-..-....+..|+.+|+.+++..
T Consensus 608 lV~VaD~-~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 608 HVIVASL-YLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred EEEEECC-CHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 4444432 334445554433 322 22233447788888999999986654445667888899999998764
No 402
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=24.92 E-value=4.6e+02 Score=22.79 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCeeEecCh--hHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEee
Q 017114 107 WLVIKFLHRAADLTLVPSV--AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVG 181 (377)
Q Consensus 107 ~~~~~~~~~~~d~ii~~s~--~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G 181 (377)
.-..+.+-+.+|.+++=.. ...+.+.++ ..+-||. +.+-...+|...-.+ ....+ +.-+...|.|+|
T Consensus 86 ~Dta~vls~y~D~iviR~~~~~~~~~~a~~-----s~vPVIN-a~~g~~~HPtQ~LaDl~Ti~e~~--g~l~g~~va~vG 157 (301)
T TIGR00670 86 ADTIKTLSGYSDAIVIRHPLEGAARLAAEV-----SEVPVIN-AGDGSNQHPTQTLLDLYTIYEEF--GRLDGLKIALVG 157 (301)
T ss_pred HHHHHHHHHhCCEEEEECCchhHHHHHHhh-----CCCCEEe-CCCCCCCCcHHHHHHHHHHHHHh--CCCCCCEEEEEc
Confidence 3455667777998887433 333344333 2344554 443333344321111 11122 233568899999
Q ss_pred cccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 182 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 182 ~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
-....+-...++.++..+ ++.+.+++...+ .+.+.+.+.+.+..+. -.+++.+.++.||++...+.
T Consensus 158 D~~~~~v~~Sl~~~~a~~-g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~---~~~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 158 DLKYGRTVHSLAEALTRF-GVEVYLISPEELRMPKEILEELKAKGIKVR---ETESLEEVIDEADVLYVTRI 225 (301)
T ss_pred cCCCCcHHHHHHHHHHHc-CCEEEEECCccccCCHHHHHHHHHcCCEEE---EECCHHHHhCCCCEEEECCc
Confidence 765555677888888888 689999984332 2333333333222211 12688899999999887654
No 403
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=24.86 E-value=2.4e+02 Score=23.34 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=37.4
Q ss_pred cHHHHHHhhcCCCEEEccccCchhHHHHH-hcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC
Q 017114 212 YREELEKMFTGMPAVFTGMLLGEELSQAY-ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 212 ~~~~l~~~~~~~~v~~~g~~~~~~~~~~~-~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
..+..+.+.+..++... .++.+++ ...|+++..+.....---..+++.+|+.|++-..+.
T Consensus 11 ~~e~a~~~a~~~g~~~~-----~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gA 71 (229)
T TIGR03855 11 NPKDAKELAERCGAKIV-----SDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGA 71 (229)
T ss_pred CHHHHHHHHHHhCCceE-----CCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcc
Confidence 34455555554443222 3344443 468998887765666667888999999999854443
No 404
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=24.80 E-value=3.6e+02 Score=23.79 Aligned_cols=41 Identities=27% Similarity=0.441 Sum_probs=30.5
Q ss_pred HHHHHhcCCEEEe--ccCCc---ccchHHHHHHhcCCCeEEecCCC
Q 017114 236 LSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 236 ~~~~~~~adi~v~--ps~~e---~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
+.+++++||++++ |...+ -++...++.|.-|.-+|-+.-|+
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 8889999999876 44433 45677888888888888665554
No 405
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=24.68 E-value=4.9e+02 Score=22.98 Aligned_cols=132 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred cCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHH
Q 017114 116 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRV 195 (377)
Q Consensus 116 ~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a 195 (377)
.||.++.....-+-...... .+..++ |++..-+-+..+. ...+..+++=+|.-..-|.-.++--|
T Consensus 96 ~ADa~VSAGnTGAlma~a~~-----~lg~i~-gI~RPAi~~~~Pt---------~~~~~~~~LDvGANvd~~~~~L~qfA 160 (338)
T COG0416 96 KADACVSAGNTGALMALALL-----KLGRIK-GIDRPALATLLPT---------IDGGKTVVLDVGANVDCKPEHLVQFA 160 (338)
T ss_pred cCCEEEecCchHHHHHHHHH-----HhccCC-CCCccceeeeccc---------cCCCceEEEeCCCCCCCCHHHHHHHH
Q ss_pred HHhC-----------CCceEEEEe-----cCccHHHHHHhhcCCC-EEEccccCchhHHHHHhcCCEEEeccCCcccchH
Q 017114 196 MDRL-----------PEARIAFIG-----DGPYREELEKMFTGMP-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 258 (377)
Q Consensus 196 ~~~l-----------~~~~l~i~G-----~g~~~~~l~~~~~~~~-v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~ 258 (377)
+--. |.+-|+=+| ..+...+--++.++.. +.|.|++...++ +-..+|++|.--.....-++
T Consensus 161 ~MG~~ya~~v~~~~~PrVgLLNIG~Ee~KG~e~~kea~~lLk~~~~~nF~GnvEg~di--~~G~~DVvV~DGFtGNv~LK 238 (338)
T COG0416 161 LMGSAYAEKVLGIKNPRVGLLNIGTEEIKGNELVKEAYELLKETPLINFIGNVEGRDI--LDGTVDVVVTDGFTGNVVLK 238 (338)
T ss_pred HHHHHHHHHhcCCCCCcEEEEecccccccCCHHHHHHHHHHHhCCCCceeeecccccc--ccCCCCEEEeCCcchHHHHH
Q ss_pred HHHHHh
Q 017114 259 VLEAMS 264 (377)
Q Consensus 259 ~~Ea~a 264 (377)
.+|..+
T Consensus 239 t~EG~a 244 (338)
T COG0416 239 TAEGTA 244 (338)
T ss_pred HHHHHH
No 406
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.67 E-value=3.2e+02 Score=21.92 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=45.0
Q ss_pred HHHHHhcCCEEEeccC-CcccchHHHHHHh-----cCCCeEEecCCCCC--ccccc--cCCCCeeEEeCCCCHHHHHHHH
Q 017114 236 LSQAYASGDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGVRAGGIP--DIIPE--DQDGKIGYLFNPGDLDDCLSKL 305 (377)
Q Consensus 236 ~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~~~~~~~~--~~~~~--~~~~~~g~~~~~~~~~~l~~~i 305 (377)
-..-++.||++|.-.. .|+|-.++.+... -|.+.+........ +.-.. ....+.-+..++.+...+++.|
T Consensus 45 d~~~l~~Adliv~~G~~~E~~~~k~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I 124 (203)
T cd01145 45 DIAKMRKADLVVTSGHELEGFEPKLAELSSNSKVQPGIKILIEDSDTVGMVDRAMGDYHGKGNPHVWLDPNNAPALAKAL 124 (203)
T ss_pred HHHHHhcCCEEEEcCCCHHHHHHHHHHhccccccCCCcccccccccccccccccccccCCCCCcCeecCHHHHHHHHHHH
Confidence 3456778898886543 4555556665432 12221110000000 00000 0112334556666777777777
Q ss_pred HHHhh--CHHHHHHHHHHHHHHHH
Q 017114 306 EPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 306 ~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
.+.+. +|+......+|+.++.+
T Consensus 125 ~~~L~~~dP~~~~~y~~N~~~~~~ 148 (203)
T cd01145 125 ADALIELDPSEQEEYKENLRVFLA 148 (203)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHH
Confidence 76665 66666666666655443
No 407
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=24.67 E-value=3.9e+02 Score=23.25 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=47.6
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEE-ecCccHHHHHHhhcCCCEEEccccCchhHHHHH-----hcCCEEE
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAY-----ASGDVFV 247 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~-G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~-----~~adi~v 247 (377)
+..+..+|. ..-|.+.+....+ .+++++.-+ |..+....+ +.+++.++.. ..+++..++ ...|+++
T Consensus 4 klrVAIIGt--G~IGt~hm~~l~~-~~~velvAVvdid~es~gl-a~A~~~Gi~~----~~~~ie~LL~~~~~~dIDiVf 75 (302)
T PRK08300 4 KLKVAIIGS--GNIGTDLMIKILR-SEHLEPGAMVGIDPESDGL-ARARRLGVAT----SAEGIDGLLAMPEFDDIDIVF 75 (302)
T ss_pred CCeEEEEcC--cHHHHHHHHHHhc-CCCcEEEEEEeCChhhHHH-HHHHHcCCCc----ccCCHHHHHhCcCCCCCCEEE
Confidence 455677772 1224454555444 678888644 433332222 2233333321 113444444 3467777
Q ss_pred eccCCcccchHHHHHHhcCCCeEEec
Q 017114 248 MPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
..+..+..---...+...|+.||...
T Consensus 76 ~AT~a~~H~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 76 DATSAGAHVRHAAKLREAGIRAIDLT 101 (302)
T ss_pred ECCCHHHHHHHHHHHHHcCCeEEECC
Confidence 65543333344666788899888643
No 408
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=24.61 E-value=1.3e+02 Score=23.83 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=9.0
Q ss_pred CCcEEEEEeeCCC
Q 017114 1 MGDEVMVVTTHEG 13 (377)
Q Consensus 1 ~G~~V~v~~~~~~ 13 (377)
+|++|+++++...
T Consensus 42 ~Ga~V~li~g~~~ 54 (185)
T PF04127_consen 42 RGAEVTLIHGPSS 54 (185)
T ss_dssp TT-EEEEEE-TTS
T ss_pred CCCEEEEEecCcc
Confidence 6999999998753
No 409
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=24.58 E-value=3.7e+02 Score=21.55 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=62.2
Q ss_pred ccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCCccc-chHHH---HHHhcCCCeE-EecCCCCCccccc
Q 017114 211 PYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETL-GLVVL---EAMSSGIPVV-GVRAGGIPDIIPE 283 (377)
Q Consensus 211 ~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~e~~-~~~~~---Ea~a~G~PvI-~~~~~~~~~~~~~ 283 (377)
..++.+..+....++....|.+.+++..-.. ..-|+++--+--|. |.-+. ......+||| .|..|.++--+..
T Consensus 15 ~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiTGhgDIpmaV~A 94 (202)
T COG4566 15 SVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHGDIPMAVQA 94 (202)
T ss_pred HHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEeCCCChHHHHHH
Confidence 3456666666666777777766555443321 12355544333232 44443 3445568887 4566666554422
Q ss_pred cCCCCeeEEeCCCCHHHHHHHHHHHhhCHH
Q 017114 284 DQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 313 (377)
Q Consensus 284 ~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 313 (377)
.+.|-.-|+-.|.+.+.+.++++..+....
T Consensus 95 mK~GAvDFLeKP~~~q~Lldav~~Al~~~~ 124 (202)
T COG4566 95 MKAGAVDFLEKPFSEQDLLDAVERALARDA 124 (202)
T ss_pred HHcchhhHHhCCCchHHHHHHHHHHHHHHH
Confidence 255666678889999999999999987533
No 410
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=24.49 E-value=1.3e+02 Score=21.12 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=27.7
Q ss_pred cccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEE
Q 017114 40 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 83 (377)
Q Consensus 40 ~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i 83 (377)
...-...+.++.++.++|++++-...+......-..+..|+|++
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 34456788999999999999887543333223334456777765
No 411
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=24.37 E-value=2.2e+02 Score=28.10 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=34.9
Q ss_pred ceEEEEec--CccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 202 ARIAFIGD--GPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 202 ~~l~i~G~--g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
-.++|.|. +..+++++++++..+-.+.+.|+ +..|++|.- +..|.++--|...|+|||.
T Consensus 597 ktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVS--------kktd~LV~G---~~aGsKl~KA~~LGI~Ii~ 657 (669)
T PRK14350 597 KKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVT--------KYLDFLLVG---EKAGLKLKKANNLGIKIMS 657 (669)
T ss_pred cEEEEecccCCCCHHHHHHHHHHcCCEEecccc--------CCCcEEEEC---CCCCchHHHHHHcCCEEec
Confidence 34555552 23455555555555544445443 234555542 3456899999999999884
No 412
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=24.20 E-value=1.7e+02 Score=24.64 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=31.7
Q ss_pred cchHHHHHHHHhcCCCEEEeCCC---chhHHHHHHHHHhhCCCEEEEecc
Q 017114 42 ALSPRIISEVARFKPDIIHASSP---GIMVFGALIIAKLLCVPIVMSYHT 88 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~---~~~~~~~~~~~~~~~~~~i~~~h~ 88 (377)
.-...+...+++..||+|+|-.. ...+.....++...|+|.+.....
T Consensus 99 ~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 99 QTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 33456777888889999999542 222333455888899998765544
No 413
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=24.13 E-value=1.8e+02 Score=23.19 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEE
Q 017114 46 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 85 (377)
Q Consensus 46 ~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~ 85 (377)
.+.+.++..++|+|.+.....+.++ ..++...++|+++.
T Consensus 41 ~la~~~~~~~~D~Ivg~e~~GiplA-~~lA~~Lg~p~v~v 79 (189)
T PRK09219 41 EFARRFKDEGITKILTIEASGIAPA-VMAALALGVPVVFA 79 (189)
T ss_pred HHHHHhccCCCCEEEEEccccHHHH-HHHHHHHCCCEEEE
Confidence 3445555668999988765555454 44777889999875
No 414
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.03 E-value=2.3e+02 Score=24.34 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=21.4
Q ss_pred cCCEEEe-ccCCcccchHHHHHHhcCCCeEEecCC
Q 017114 242 SGDVFVM-PSESETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 242 ~adi~v~-ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
.+|.+++ |...+.....+-++...|+|||+.+..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 57 GVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred CCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 4675554 433333344566777889999987654
No 415
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases. The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged
Probab=24.01 E-value=1.6e+02 Score=23.49 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=27.7
Q ss_pred cccchHHHHHHHHhcCCCEEEeCCCchhHHHHHH-HHHhhCCC
Q 017114 40 SLALSPRIISEVARFKPDIIHASSPGIMVFGALI-IAKLLCVP 81 (377)
Q Consensus 40 ~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~-~~~~~~~~ 81 (377)
...+...+.+.+.+.+||+|..++...+.+..+. -++..|++
T Consensus 51 E~~lL~~f~~~i~~~dPDvi~g~N~~~FD~~yl~~R~~~~~i~ 93 (193)
T cd05784 51 EKSLLLALIAWFAQYDPDIIIGWNVINFDLRLLQRRAEAHGLP 93 (193)
T ss_pred HHHHHHHHHHHHHhhCCCEEEECCCcCcCHHHHHHHHHHhCCC
Confidence 3455677888999999999999987555444322 22334544
No 416
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=23.95 E-value=5.2e+02 Score=23.02 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=47.2
Q ss_pred CEEEccccCchhHHHHH----------hcCCEEEeccCCcc-cchHHHHH-----HhcCCCeEEe--cCCCCCccccccC
Q 017114 224 PAVFTGMLLGEELSQAY----------ASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQ 285 (377)
Q Consensus 224 ~v~~~g~~~~~~~~~~~----------~~adi~v~ps~~e~-~~~~~~Ea-----~a~G~PvI~~--~~~~~~~~~~~~~ 285 (377)
++...|.+|.+.+..-- ...|++|.-+..-| .|.|++.. +..|+|+|-| |.|..-++.
T Consensus 244 g~~v~GP~paDt~F~~~~~~~~~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA---- 319 (345)
T PRK02746 244 DIQLLGPIPPDTCWVSPAQAWYGKGVAEAPDGYLALYHDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAFDIA---- 319 (345)
T ss_pred CceeeCCCCchhhccccccccccccccCCCCEEEECcccCCChhheeeccCcceEEecCCCeeEeCCCCcchhhhh----
Confidence 38888999887664322 56899887665322 24554432 4679999855 445555554
Q ss_pred CCCeeEEeCCCCHHHHHHHHHHH
Q 017114 286 DGKIGYLFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 286 ~~~~g~~~~~~~~~~l~~~i~~~ 308 (377)
+. | --|+.++.++|...
T Consensus 320 -Gk-g----~A~~~S~~~Ai~lA 336 (345)
T PRK02746 320 -GK-G----IARPQSMKAAIKLA 336 (345)
T ss_pred -cC-C----CCCHHHHHHHHHHH
Confidence 22 2 23788899998765
No 417
>PLN02285 methionyl-tRNA formyltransferase
Probab=23.94 E-value=2.8e+02 Score=24.54 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=41.6
Q ss_pred CCCCeEEEeecccc-cccHHHHHHHHHhC-CCceEEEEecCccH----------HHHHHhhcCCCEE---Ec--cccCch
Q 017114 172 PDKPLIVHVGRLGV-EKSLDFLKRVMDRL-PEARIAFIGDGPYR----------EELEKMFTGMPAV---FT--GMLLGE 234 (377)
Q Consensus 172 ~~~~~i~~~G~~~~-~k~~~~l~~a~~~l-~~~~l~i~G~g~~~----------~~l~~~~~~~~v~---~~--g~~~~~ 234 (377)
+.+..|+|+|+-.. ...++.++++.+.- .++.++.+-..+.. ..+++.+.+.+|. +. .....+
T Consensus 4 ~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~~ 83 (334)
T PLN02285 4 GRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGEE 83 (334)
T ss_pred CCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCCH
Confidence 34567888886543 34455555554332 23444333222111 1244455554543 21 222233
Q ss_pred hHHHHHh--cCCEEEeccCCcccchHHHHH
Q 017114 235 ELSQAYA--SGDVFVMPSESETLGLVVLEA 262 (377)
Q Consensus 235 ~~~~~~~--~adi~v~ps~~e~~~~~~~Ea 262 (377)
++.+.+. +.|++|+.++..-.|-.+++.
T Consensus 84 ~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~ 113 (334)
T PLN02285 84 DFLSALRELQPDLCITAAYGNILPQKFLDI 113 (334)
T ss_pred HHHHHHHhhCCCEEEhhHhhhhcCHHHHhh
Confidence 4444443 478877765433333333333
No 418
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=23.83 E-value=2.6e+02 Score=24.65 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=48.1
Q ss_pred CCCEEEccccCchhHH--HHHhcCCEEEeccCCcc-cchHHHHH-----HhcCCCeEEe--cCCCCCccccccCCCCeeE
Q 017114 222 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGY 291 (377)
Q Consensus 222 ~~~v~~~g~~~~~~~~--~~~~~adi~v~ps~~e~-~~~~~~Ea-----~a~G~PvI~~--~~~~~~~~~~~~~~~~~g~ 291 (377)
..++...|.+|.+.+. ......|++|.-+..-| .|.|++.. +..|+|+|-| |.|..-++. +. |
T Consensus 233 ~~Gi~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIA-----Gk-g- 305 (329)
T PRK01909 233 AAGIDARGPYPADTLFQPRYLEDADCVLAMFHDQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTALDLA-----GT-G- 305 (329)
T ss_pred HCCCCccCCCCchhhcccccccCCCEEEEccccccchhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-C-
Confidence 3467778999877653 33456899887654322 25554433 3679999855 445555554 22 2
Q ss_pred EeCCCCHHHHHHHHHHH
Q 017114 292 LFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 292 ~~~~~~~~~l~~~i~~~ 308 (377)
--|+.++.++|...
T Consensus 306 ---~A~~~S~~~Ai~lA 319 (329)
T PRK01909 306 ---RADPGSMIAAIDTA 319 (329)
T ss_pred ---CCCHHHHHHHHHHH
Confidence 22788899998765
No 419
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=23.77 E-value=1.5e+02 Score=24.08 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=27.9
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHH-HHHHhhCCCE
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGAL-IIAKLLCVPI 82 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~-~~~~~~~~~~ 82 (377)
..+...+.+.+.+.+||+|..++...+-++.+ .-++..|++.
T Consensus 59 ~~lL~~f~~~i~~~dPdii~g~N~~~FD~pyl~~R~~~~~~~~ 101 (207)
T cd05785 59 KELLEELVAIIRERDPDVIEGHNIFRFDLPYLRRRCRRHGVPL 101 (207)
T ss_pred HHHHHHHHHHHHHhCCCEEeccCCcccCHHHHHHHHHHhCCCc
Confidence 44566788889999999999988644444432 2344566654
No 420
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=23.56 E-value=2.7e+02 Score=25.22 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=10.1
Q ss_pred hHHHHHhcCCEEEe
Q 017114 235 ELSQAYASGDVFVM 248 (377)
Q Consensus 235 ~~~~~~~~adi~v~ 248 (377)
++.++++.||++++
T Consensus 160 ~l~ell~~aDiV~l 173 (381)
T PRK00257 160 SLERILEECDVISL 173 (381)
T ss_pred CHHHHHhhCCEEEE
Confidence 56777788887665
No 421
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=23.31 E-value=4.3e+02 Score=21.82 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=59.2
Q ss_pred EEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc-CCEEEeccC-CcccchHHHHHHh----cCCCeEE-ecCC
Q 017114 204 IAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS-GDVFVMPSE-SETLGLVVLEAMS----SGIPVVG-VRAG 275 (377)
Q Consensus 204 l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~-adi~v~ps~-~e~~~~~~~Ea~a----~G~PvI~-~~~~ 275 (377)
+.++-+.+ ..+.+.......+......-+.++....+.. .|++++--. .+.-|..++.-+- ...|||. |..+
T Consensus 3 ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~ 82 (229)
T COG0745 3 ILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQPDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARD 82 (229)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCC
Confidence 34444333 2233344444444333333322444444443 788777432 2333555555554 5677764 4444
Q ss_pred CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 276 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
...+.+..-+.|-..++..|.++.++...+..++..
T Consensus 83 ~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 83 DEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred cHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 444433222456567899999999999999988763
No 422
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=23.30 E-value=1.8e+02 Score=24.84 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCc
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVP 91 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~ 91 (377)
.+..+.+++.++|+|++...........++.+..++-+|+.-|++..
T Consensus 172 ~~~v~~lr~~~~D~II~l~H~G~~~d~~la~~~~giD~IiggH~H~~ 218 (281)
T cd07409 172 QKEADKLKAQGVNKIIALSHSGYEVDKEIARKVPGVDVIVGGHSHTF 218 (281)
T ss_pred HHHHHHHHhcCCCEEEEEeccCchhHHHHHHcCCCCcEEEeCCcCcc
Confidence 34455566668998887532222222233445578889998888754
No 423
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.27 E-value=5.3e+02 Score=22.91 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCceEEEEe-cCccHHHHHHhhcCCCE---EEccccCchhHHHHHhcC--CEEEeccCCcccchHHHHH
Q 017114 189 LDFLKRVMDRLPEARIAFIG-DGPYREELEKMFTGMPA---VFTGMLLGEELSQAYASG--DVFVMPSESETLGLVVLEA 262 (377)
Q Consensus 189 ~~~l~~a~~~l~~~~l~i~G-~g~~~~~l~~~~~~~~v---~~~g~~~~~~~~~~~~~a--di~v~ps~~e~~~~~~~Ea 262 (377)
-..+++++..+|+.+..|++ ..+..+.-++.+...++ +..|. +|++ ++.. |++.+++..-..--.++-+
T Consensus 18 a~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~s--yEeL---akd~~vDvVyi~~~~~qH~evv~l~ 92 (351)
T KOG2741|consen 18 ARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGS--YEEL---AKDPEVDVVYISTPNPQHYEVVMLA 92 (351)
T ss_pred HHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccC--HHHH---hcCCCcCEEEeCCCCccHHHHHHHH
Confidence 45678888888865555554 23455666666666554 33332 2444 4444 8877777554445578889
Q ss_pred HhcCCCeEEe
Q 017114 263 MSSGIPVVGV 272 (377)
Q Consensus 263 ~a~G~PvI~~ 272 (377)
+..|++|++-
T Consensus 93 l~~~K~VL~E 102 (351)
T KOG2741|consen 93 LNKGKHVLCE 102 (351)
T ss_pred HHcCCcEEec
Confidence 9999998864
No 424
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=23.22 E-value=4.7e+02 Score=23.34 Aligned_cols=87 Identities=14% Similarity=0.230 Sum_probs=42.9
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCce---EEEEecCccH-HHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEAR---IAFIGDGPYR-EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~---l~i~G~g~~~-~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
..+..+|.-+. - -..+++++...|++. +.++.+.... +.+ .+. ...+.+... +.. -+..+|++++..
T Consensus 6 ~~VaIvGATG~-v-G~ell~lL~~h~~f~v~~l~~~aS~~saGk~~-~~~-~~~l~v~~~----~~~-~~~~~Divf~a~ 76 (347)
T PRK06728 6 YHVAVVGATGA-V-GQKIIELLEKETKFNIAEVTLLSSKRSAGKTV-QFK-GREIIIQEA----KIN-SFEGVDIAFFSA 76 (347)
T ss_pred CEEEEEeCCCH-H-HHHHHHHHHHCCCCCcccEEEEECcccCCCCe-eeC-CcceEEEeC----CHH-HhcCCCEEEECC
Confidence 45666664332 1 356788888777766 6666543110 111 110 112222221 112 237789988755
Q ss_pred CCcccchHHHHHHhcCCCeE
Q 017114 251 ESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI 270 (377)
-.+...--.-++...|++||
T Consensus 77 ~~~~s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 77 GGEVSRQFVNQAVSSGAIVI 96 (347)
T ss_pred ChHHHHHHHHHHHHCCCEEE
Confidence 33322222334557898888
No 425
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=23.13 E-value=4e+02 Score=21.65 Aligned_cols=13 Identities=0% Similarity=0.061 Sum_probs=6.7
Q ss_pred CCCHHHHHHHHHH
Q 017114 295 PGDLDDCLSKLEP 307 (377)
Q Consensus 295 ~~~~~~l~~~i~~ 307 (377)
.++.+++.+.+..
T Consensus 163 ~dt~~~L~~r~~~ 175 (207)
T PLN02331 163 TDTPEELAARVLH 175 (207)
T ss_pred CCCHHHHHHHHHH
Confidence 3445566555543
No 426
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=22.92 E-value=1.8e+02 Score=27.33 Aligned_cols=70 Identities=16% Similarity=0.344 Sum_probs=45.0
Q ss_pred HhcCCEEEeccCCc------ccchHHHHHHhcCCCeEEecCCCCC--ccc-cccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 240 YASGDVFVMPSESE------TLGLVVLEAMSSGIPVVGVRAGGIP--DII-PEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 240 ~~~adi~v~ps~~e------~~~~~~~Ea~a~G~PvI~~~~~~~~--~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
|.--|++++|.+.+ .+.+.+.+.+....|+|.++-.... ++. .-.+.+..|++-...++++..+.+.++.
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~I~~vk 87 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEEVRKVK 87 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHHHHHhh
Confidence 33458888887644 3466788999999999998654332 210 0014566777765567777777776554
No 427
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative
Probab=22.47 E-value=1.5e+02 Score=23.55 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=27.5
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHH-HHHhhCCCE
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALI-IAKLLCVPI 82 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~-~~~~~~~~~ 82 (377)
......+.+.++..+||++..|+...+.+..+. -++..|++.
T Consensus 64 ~~lL~~f~~~i~~~dpdiivg~N~~~FD~~~L~~R~~~~~~~~ 106 (199)
T cd05160 64 KELLKRFFDIIREYDPDILTGYNIDDFDLPYLLKRAEALGIKL 106 (199)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCCcHHHHHHHHHHhCCCc
Confidence 444667888889999999999987444443222 334456554
No 428
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=22.30 E-value=1.8e+02 Score=19.44 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=29.9
Q ss_pred CCeEEEeecc-cc--cccHHHHHHHHHhCC---CceEEEEecCccHHHHHHhhcCC
Q 017114 174 KPLIVHVGRL-GV--EKSLDFLKRVMDRLP---EARIAFIGDGPYREELEKMFTGM 223 (377)
Q Consensus 174 ~~~i~~~G~~-~~--~k~~~~l~~a~~~l~---~~~l~i~G~g~~~~~l~~~~~~~ 223 (377)
+++++++... -+ .+.+..+.++.+.++ ++.++.+......+..++..++.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 3445554433 22 344566666666666 67888777666677777777665
No 429
>PRK14142 heat shock protein GrpE; Provisional
Probab=22.20 E-value=3e+02 Score=22.66 Aligned_cols=48 Identities=4% Similarity=-0.031 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017114 298 LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 298 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~ 346 (377)
.+++.+.+.++..+-+.+++..++-++.+..|..+.+++.++ .++..+
T Consensus 49 ~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLL-pVlDnL 96 (223)
T PRK14142 49 VAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLL-GVLDDL 96 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHhHH
Confidence 345555565665565555555555566667899999999998 566554
No 430
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=22.06 E-value=4.2e+02 Score=21.31 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=44.6
Q ss_pred HhCCCceEEEEecCccHHH-HHHhhcCCC-----EEEc-cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 197 DRLPEARIAFIGDGPYREE-LEKMFTGMP-----AVFT-GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 197 ~~l~~~~l~i~G~g~~~~~-l~~~~~~~~-----v~~~-g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
..+.+-++.++|..+.... +++.+...+ -.|+ |.+++... .-+..=|++++... ..-...+.||..+|+|+
T Consensus 57 ~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdlliv~dp-~~~~~Av~EA~~l~IP~ 134 (196)
T TIGR01012 57 VRIEPEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVVVVTDP-RADHQALKEASEVGIPI 134 (196)
T ss_pred HHhhCCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEEEEECC-ccccHHHHHHHHcCCCE
Confidence 3334567888887654433 333332221 1233 33333221 22445566555332 23357899999999999
Q ss_pred EEe-cCCCCCccc
Q 017114 270 VGV-RAGGIPDII 281 (377)
Q Consensus 270 I~~-~~~~~~~~~ 281 (377)
|+- |....++.+
T Consensus 135 Iai~DTn~dp~~v 147 (196)
T TIGR01012 135 VALCDTDNPLRYV 147 (196)
T ss_pred EEEeeCCCCCccC
Confidence 975 444555554
No 431
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.96 E-value=5e+02 Score=22.10 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=50.8
Q ss_pred eEEEeecccccccHHHHHHHHHhCC--CceEEEEe-----------cCc---cHHHHHHhhcCCCEEEccc-cCchhHHH
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMDRLP--EARIAFIG-----------DGP---YREELEKMFTGMPAVFTGM-LLGEELSQ 238 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~~l~--~~~l~i~G-----------~g~---~~~~l~~~~~~~~v~~~g~-~~~~~~~~ 238 (377)
.++.+|- -.....+.+++.++.+. +++++..| .|. ....+++..++.++.+.-. .+..++..
T Consensus 28 ~~~iaGP-Csie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~ 106 (266)
T PRK13398 28 KIIIAGP-CAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEE 106 (266)
T ss_pred EEEEEeC-CcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHH
Confidence 3444452 22334555555555552 45555555 111 2234555555556544333 33344444
Q ss_pred HHhcCCEEEeccCCcccch-HHHHHHhcCCCeEEecC
Q 017114 239 AYASGDVFVMPSESETLGL-VVLEAMSSGIPVVGVRA 274 (377)
Q Consensus 239 ~~~~adi~v~ps~~e~~~~-~~~Ea~a~G~PvI~~~~ 274 (377)
+...+|++-.+++. .... -+-++...|+||+.++.
T Consensus 107 l~~~vd~~kIga~~-~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 107 VADYADMLQIGSRN-MQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 44558988888862 2223 34455567999997754
No 432
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=21.84 E-value=2.1e+02 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=20.6
Q ss_pred EEEeccCCcccchHHHHHH-hcCCCeEE
Q 017114 245 VFVMPSESETLGLVVLEAM-SSGIPVVG 271 (377)
Q Consensus 245 i~v~ps~~e~~~~~~~Ea~-a~G~PvI~ 271 (377)
+++.|.-+...+..+.+|+ +.++|+|=
T Consensus 69 iIINpga~THtSiAl~DAl~~~~~P~vE 96 (141)
T TIGR01088 69 IIINPGALTHTSVALRDALAAVSLPVVE 96 (141)
T ss_pred EEEcChHHhhhHHHHHHHHHcCCCCEEE
Confidence 4566776667788999998 47899983
No 433
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=21.68 E-value=4.5e+02 Score=22.90 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCeeEecChh--HHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEeec
Q 017114 108 LVIKFLHRAADLTLVPSVA--IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 182 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~~s~~--~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~ 182 (377)
-..+.+-+.+|.+++=... ..+.+.+. ..+-||.-+ + ...+|...-.+ ..... +.-+...|.++|.
T Consensus 86 Dt~~vls~y~D~iv~R~~~~~~~~~~a~~-----~~vPVINa~-~-~~~HPtQaL~Dl~Ti~e~~--g~l~g~~v~~vGd 156 (304)
T TIGR00658 86 DTARVLSRYVDGIMARVYKHEDVEELAKY-----ASVPVINGL-T-DLFHPCQALADLLTIIEHF--GKLKGVKVVYVGD 156 (304)
T ss_pred HHHHHHHHhCCEEEEECCChHHHHHHHHh-----CCCCEEECC-C-CCCChHHHHHHHHHHHHHh--CCCCCcEEEEEeC
Confidence 4556677779988774433 33444433 234455543 3 23333211111 11122 2235678999997
Q ss_pred ccccccHHHHHHHHHhCCCceEEEEecCccH--HH----HHHhhcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 183 LGVEKSLDFLKRVMDRLPEARIAFIGDGPYR--EE----LEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 183 ~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~--~~----l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
. .+-...++.++..+ ++.+.+++...+. +. +++.+.+.+..+.- ..++.+.+..||++....
T Consensus 157 ~--~~v~~Sl~~~l~~~-g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~---~~d~~~a~~~aDvvy~~~ 224 (304)
T TIGR00658 157 G--NNVCNSLMLAGAKL-GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVEL---THDPVEAVKGADVIYTDV 224 (304)
T ss_pred C--CchHHHHHHHHHHc-CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEE---EcCHHHHhCCCCEEEEcC
Confidence 6 24567778888887 6899999843221 12 22222222222211 157788999999998865
No 434
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=21.65 E-value=3.2e+02 Score=22.38 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 294 NPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 294 ~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
+..+.+.|.+++...+. ||+.+++-.++..++++..+.+.+...+.
T Consensus 64 p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~ 110 (216)
T PF11264_consen 64 PEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSWLS 110 (216)
T ss_pred ChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34577888888888887 89988888888888888888887766653
No 435
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=21.61 E-value=4.1e+02 Score=23.50 Aligned_cols=131 Identities=11% Similarity=0.109 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCeeEecChh--HHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEeec
Q 017114 108 LVIKFLHRAADLTLVPSVA--IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 182 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~~s~~--~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~ 182 (377)
-..+.+-+.+|.+++=... ..+.+.+. ..+-|| |+-+ +..+|...-.+ ....+ .+.-+...|.++|-
T Consensus 92 DTarvls~y~D~iviR~~~~~~~~~~a~~-----s~vPVI-Na~~-~~~HPtQaL~Dl~Ti~e~~-~g~l~g~kia~vGD 163 (332)
T PRK04284 92 DTARVLGGMYDGIEYRGFSQRTVETLAEY-----SGVPVW-NGLT-DEDHPTQVLADFLTAKEHL-KKPYKDIKFTYVGD 163 (332)
T ss_pred HHHHHHHHhCCEEEEecCchHHHHHHHHh-----CCCCEE-ECCC-CCCChHHHHHHHHHHHHHh-cCCcCCcEEEEecC
Confidence 3556677779988874433 33444333 234466 4543 33444321111 11111 12235678999997
Q ss_pred ccccccHHHHHHHHHhCCCceEEEEecCc---cHH---HHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 183 LGVEKSLDFLKRVMDRLPEARIAFIGDGP---YRE---ELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 183 ~~~~k~~~~l~~a~~~l~~~~l~i~G~g~---~~~---~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
.. ..-...++.++..+ ++.+.+++... ..+ ..++.+...+..+. . ..++.+.+..||++....+
T Consensus 164 ~~-~~v~~Sl~~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~-~--~~d~~ea~~~aDvvy~~~w 233 (332)
T PRK04284 164 GR-NNVANALMQGAAIM-GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT-I--TDDIDEGVKGSDVIYTDVW 233 (332)
T ss_pred CC-cchHHHHHHHHHHc-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE-E--EcCHHHHhCCCCEEEECCc
Confidence 63 23456777888877 88999998432 112 22222222222221 1 1578889999999987654
No 436
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=21.34 E-value=3.9e+02 Score=23.80 Aligned_cols=101 Identities=16% Similarity=0.286 Sum_probs=57.3
Q ss_pred CCceEEEEecCccHHHHHHhhc--CCCEEEcc-ccCchhHHHHHhcCCEEEeccCCcccchH--HHHHHhcCCCeEEecC
Q 017114 200 PEARIAFIGDGPYREELEKMFT--GMPAVFTG-MLLGEELSQAYASGDVFVMPSESETLGLV--VLEAMSSGIPVVGVRA 274 (377)
Q Consensus 200 ~~~~l~i~G~g~~~~~l~~~~~--~~~v~~~g-~~~~~~~~~~~~~adi~v~ps~~e~~~~~--~~Ea~a~G~PvI~~~~ 274 (377)
.+-.|+|+|+.. ..+.++- ...|.+.| |-..+++..+-++-++=++.+.++.|-.. +--|++--+ |-.+.
T Consensus 113 ~~g~LlIVGnR~---~iq~lAL~~~~AVLvTGGF~~s~evi~lAne~~lPvlstsYDTFTVAtmIN~Al~n~l--IKkdI 187 (432)
T COG4109 113 DPGGLLIVGNRE---DIQLLALENGNAVLVTGGFDVSDEVIKLANEKGLPVLSTSYDTFTVATMINKALSNQL--IKKDI 187 (432)
T ss_pred CCCceEEEecHH---HHHHHHHhcCCeEEEeCCCCccHHHHHhhcccCCceEEecccceeHHHHHHHHHHHhh--hhhhe
Confidence 456789999643 3333332 33466665 54568888988888998888888888543 223333221 11122
Q ss_pred CCCCccccccCCCCeeEEeCCCCHHHHHHHHHH
Q 017114 275 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 307 (377)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 307 (377)
--..+++. .-...+++.+.+..+++.+...+
T Consensus 188 ~~Vedi~~--P~~~~~yL~~~d~v~d~~~l~~k 218 (432)
T COG4109 188 ITVEDIMT--PLEDTSYLRETDTVEDWLDLVEK 218 (432)
T ss_pred eeHHHhcc--ccccceeccccccHHHHHHHHHH
Confidence 22233331 01345677777777776666554
No 437
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique
Probab=21.25 E-value=1.9e+02 Score=23.38 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=27.8
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHH-HHHhhCCCE
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALI-IAKLLCVPI 82 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~-~~~~~~~~~ 82 (377)
..+...+.+.+++.+||+|..++...+-++.+. -++..|++.
T Consensus 74 ~~lL~~f~~~i~~~~Pd~i~gyN~~~FD~pyl~~R~~~~~~~~ 116 (204)
T cd05779 74 KALLQRFFEHIREVKPHIIVTYNGDFFDWPFVEARAAIHGLSM 116 (204)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCccccCHHHHHHHHHHhCCCc
Confidence 445667888899999999999886555444322 334556553
No 438
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.24 E-value=4.3e+02 Score=22.37 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=24.6
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEe-cCCCCCccc
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPDII 281 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~-~~~~~~~~~ 281 (377)
-|++++.... .-...+.||..+|+|+|+- |....+..+
T Consensus 158 Pd~iii~d~~-~~~~ai~Ea~kl~IPiIaivDTn~dp~~I 196 (258)
T PRK05299 158 PDALFVVDPN-KEHIAVKEARKLGIPVVAIVDTNCDPDGV 196 (258)
T ss_pred CCEEEEeCCC-ccHHHHHHHHHhCCCEEEEeeCCCCCccc
Confidence 3665554432 2247899999999999975 444444444
No 439
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.21 E-value=4.5e+02 Score=21.27 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=7.6
Q ss_pred EEccccCchhHHHHHh
Q 017114 226 VFTGMLLGEELSQAYA 241 (377)
Q Consensus 226 ~~~g~~~~~~~~~~~~ 241 (377)
.+.|-.+..|+...++
T Consensus 100 ~iPG~~TptEi~~A~~ 115 (201)
T PRK06015 100 LLPGAATPSEVMALRE 115 (201)
T ss_pred EeCCCCCHHHHHHHHH
Confidence 3444555555544443
No 440
>PRK12342 hypothetical protein; Provisional
Probab=21.19 E-value=2.1e+02 Score=24.13 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=30.9
Q ss_pred hHHHHHHHHhcCCCEEEeCCC---chhHHHHHHHHHhhCCCEEEEecc
Q 017114 44 SPRIISEVARFKPDIIHASSP---GIMVFGALIIAKLLCVPIVMSYHT 88 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~---~~~~~~~~~~~~~~~~~~i~~~h~ 88 (377)
...+...+++..||+|++-.. ...+..+..++...|.|.+.....
T Consensus 98 a~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 98 AKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 456777788888999999542 222233455788899998876554
No 441
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=21.15 E-value=2e+02 Score=20.37 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCceEEEEecCc
Q 017114 189 LDFLKRVMDRLPEARIAFIGDGP 211 (377)
Q Consensus 189 ~~~l~~a~~~l~~~~l~i~G~g~ 211 (377)
.+.+...+...|+..++|+|.|.
T Consensus 41 ~~~l~~l~~~~p~pe~liiGtG~ 63 (110)
T PF04430_consen 41 PEDLEELLELEPKPEVLIIGTGK 63 (110)
T ss_dssp THHHHHHHCTCCS-SEEEEEETT
T ss_pred HHHHHHHHhccCCCcEEEEccCC
Confidence 45566666666888999999875
No 442
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=21.10 E-value=2.7e+02 Score=23.18 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCCEEEeCCCchhHHH---HHHHHHhhCCCEEEEecc
Q 017114 46 RIISEVARFKPDIIHASSPGIMVFG---ALIIAKLLCVPIVMSYHT 88 (377)
Q Consensus 46 ~~~~~i~~~~pDii~~~~~~~~~~~---~~~~~~~~~~~~i~~~h~ 88 (377)
...+.++.++||++++.+|+..... +.-.....++|.|+...+
T Consensus 50 ~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~ 95 (276)
T PF01993_consen 50 VVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDA 95 (276)
T ss_dssp HHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEG
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCC
Confidence 3456667899999998877554332 222334479998876443
No 443
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=20.93 E-value=1.8e+02 Score=24.97 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=24.2
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhC-CCEEEEec
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC-VPIVMSYH 87 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~-~~~i~~~h 87 (377)
....+.+.+...+||+|++.+.... ..+.....+ +|+|+..-
T Consensus 47 ~~~~~~~~l~~~~~DlIi~~gt~aa---~~~~~~~~~~iPVVf~~V 89 (294)
T PF04392_consen 47 KLRQIARKLKAQKPDLIIAIGTPAA---QALAKHLKDDIPVVFCGV 89 (294)
T ss_dssp HHHHHHHHHCCTS-SEEEEESHHHH---HHHHHH-SS-S-EEEECE
T ss_pred HHHHHHHHHhcCCCCEEEEeCcHHH---HHHHHhcCCCcEEEEEec
Confidence 3455666677789999998874322 122334456 89987654
No 444
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=20.62 E-value=1.9e+02 Score=22.81 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEe
Q 017114 46 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 86 (377)
Q Consensus 46 ~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 86 (377)
.+.+.++..++|.|.+-...-+.++ ..++...|+|++..-
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a-~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLA-AAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhH-HHHHHHhCCCEEEEE
Confidence 4556666678999999876545444 447888999998753
No 445
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=20.57 E-value=4e+02 Score=23.97 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=13.5
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEec
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD 209 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~ 209 (377)
..|+.+|..+.- | ..+..++... +..+.+++.
T Consensus 99 ~~I~IiGG~Glm-G-~slA~~l~~~-G~~V~~~d~ 130 (374)
T PRK11199 99 RPVVIVGGKGQL-G-RLFAKMLTLS-GYQVRILEQ 130 (374)
T ss_pred ceEEEEcCCChh-h-HHHHHHHHHC-CCeEEEeCC
Confidence 446666532211 1 2233333332 455666653
No 446
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=20.50 E-value=2.7e+02 Score=24.69 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCceEEEEecCcc-HHHHHHhhcCCCEEEcccc-CchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCC
Q 017114 191 FLKRVMDRLPEARIAFIGDGPY-REELEKMFTGMPAVFTGML-LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 268 (377)
Q Consensus 191 ~l~~a~~~l~~~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~-~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 268 (377)
.+++.+...|+++++.+.+... .+.+.+............+ +.++. ....+|++++....+.....+.+++..|++
T Consensus 17 ~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~~~~~~~v~~a~~aG~~ 94 (343)
T PRK00436 17 ELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPHGVSMDLAPQLLEAGVK 94 (343)
T ss_pred HHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCcHHHHHHHHHHHhCCCE
Confidence 4566666778888877665321 1122221111110000111 11222 446789988766555445556667788999
Q ss_pred eEE
Q 017114 269 VVG 271 (377)
Q Consensus 269 vI~ 271 (377)
||-
T Consensus 95 VID 97 (343)
T PRK00436 95 VID 97 (343)
T ss_pred EEE
Confidence 984
No 447
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=20.48 E-value=95 Score=23.77 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHhcCCEEEeccCC-----------cccchHHHHHHhcCCCeEEe
Q 017114 239 AYASGDVFVMPSES-----------ETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 239 ~~~~adi~v~ps~~-----------e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.+..+|++++|.-. .++-..+.++...|.||++-
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~ae 48 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAE 48 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEE
Confidence 35678888888532 25566799999999999974
No 448
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=20.44 E-value=87 Score=20.58 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=15.4
Q ss_pred ccccCchhHHHH-HhcCCEEEecc
Q 017114 228 TGMLLGEELSQA-YASGDVFVMPS 250 (377)
Q Consensus 228 ~g~~~~~~~~~~-~~~adi~v~ps 250 (377)
.+.++..++... ...+|+++.+.
T Consensus 31 v~~~~~~~~~~~~~~~~DlIitT~ 54 (85)
T cd05568 31 IDVISLRELEEVDLDDYDLIISTV 54 (85)
T ss_pred EEEEeHHHHhhCcccCCCEEEEcc
Confidence 355555677665 67889888554
No 449
>PRK14851 hypothetical protein; Provisional
Probab=20.41 E-value=5.1e+02 Score=25.68 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=29.9
Q ss_pred cccCchhHHHHHhcCCEEEeccCCcccch--HHH-HHHhcCCCeEEecCCC
Q 017114 229 GMLLGEELSQAYASGDVFVMPSESETLGL--VVL-EAMSSGIPVVGVRAGG 276 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~~e~~~~--~~~-Ea~a~G~PvI~~~~~~ 276 (377)
..++.+++.+++..+|++|-....-.+.. .+. .+...|+|+|.....+
T Consensus 120 ~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 120 AGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred cCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 34555677888999999885543212221 222 4567899999775433
No 450
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=20.41 E-value=3e+02 Score=23.86 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=32.7
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCC-EEEEeccCCcc
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVPV 92 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~ 92 (377)
-+..+.+...+.+||.|++-.--..-...++.+-..|.+ .+.++|...+.
T Consensus 192 ~~~~~l~~aLR~~pD~iivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~~~~ 242 (299)
T TIGR02782 192 SMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIHANNAK 242 (299)
T ss_pred CHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHHHHcCCCCeEEeeccCCHH
Confidence 345666777778999999865322222234456667887 78899986543
No 451
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=20.21 E-value=2e+02 Score=25.42 Aligned_cols=43 Identities=12% Similarity=0.325 Sum_probs=28.3
Q ss_pred hhHHHHHhcCCEEEec--cCC---cccchHHHHHHhcCCCeEEecCCC
Q 017114 234 EELSQAYASGDVFVMP--SES---ETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 234 ~~~~~~~~~adi~v~p--s~~---e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
.++.+++..||++++. ... .-++...++.|.-|..+|.+.-|.
T Consensus 190 ~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 190 DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred CCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 4678899999987763 332 234556777777787777554443
No 452
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.03 E-value=5.7e+02 Score=22.08 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=38.9
Q ss_pred HHHHHHHHhC----CCceEEEEecCc-cHHHHHHhhcCC--CEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 190 DFLKRVMDRL----PEARIAFIGDGP-YREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 190 ~~l~~a~~~l----~~~~l~i~G~g~-~~~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
..++++++.+ .+-+.+++|.+. ...-+..+.... .|...-.-+ .++.+++++||+++...-
T Consensus 143 ~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 143 LGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-KDMASYLKDADVIVSAVG 210 (286)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-hhHHHHHhhCCEEEECCC
Confidence 4445555544 578899999876 444444444333 355444332 578999999999997653
Done!